Query 015214
Match_columns 411
No_of_seqs 207 out of 1085
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0703 Predicted GTPase-activ 100.0 9.2E-31 2E-35 254.1 10.9 231 1-308 49-287 (287)
2 smart00105 ArfGap Putative GTP 99.9 4.3E-24 9.4E-29 180.6 5.5 77 1-77 27-110 (112)
3 PF01412 ArfGap: Putative GTPa 99.9 5.2E-23 1.1E-27 174.7 1.7 73 1-73 37-115 (116)
4 PLN03119 putative ADP-ribosyla 99.9 1.7E-21 3.7E-26 202.9 10.2 112 1-115 47-168 (648)
5 COG5347 GTPase-activating prot 99.8 3.3E-20 7.2E-25 182.9 7.4 77 1-77 44-128 (319)
6 PLN03131 hypothetical protein; 99.7 1.9E-18 4.2E-23 181.4 8.0 77 1-80 47-130 (705)
7 KOG0705 GTPase-activating prot 99.7 3.5E-19 7.6E-24 186.0 0.5 110 1-110 537-655 (749)
8 PLN03114 ADP-ribosylation fact 99.5 9.8E-14 2.1E-18 139.5 15.0 76 1-76 46-130 (395)
9 KOG0704 ADP-ribosylation facto 99.5 8.5E-15 1.8E-19 146.3 4.6 48 1-48 43-90 (386)
10 KOG0521 Putative GTPase activa 99.5 1.2E-14 2.7E-19 157.3 3.0 79 1-79 450-536 (785)
11 KOG0706 Predicted GTPase-activ 99.4 1.3E-13 2.9E-18 140.9 4.1 48 1-48 47-94 (454)
12 KOG1117 Rho- and Arf-GTPase ac 98.9 4.5E-10 9.7E-15 122.4 3.4 76 2-77 323-406 (1186)
13 KOG0818 GTPase-activating prot 98.9 3.8E-10 8.3E-15 117.8 2.4 73 2-74 33-119 (669)
14 KOG0702 Predicted GTPase-activ 98.0 7.5E-05 1.6E-09 78.6 13.1 82 2-84 51-139 (524)
15 KOG0521 Putative GTPase activa 42.9 7 0.00015 44.3 -0.5 45 1-47 655-699 (785)
16 PF12763 EF-hand_4: Cytoskelet 24.6 38 0.00083 29.2 1.2 11 397-407 64-74 (104)
17 PRK02770 S-adenosylmethionine 23.3 35 0.00076 31.1 0.7 41 309-351 40-89 (139)
No 1
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=9.2e-31 Score=254.08 Aligned_cols=231 Identities=26% Similarity=0.301 Sum_probs=144.4
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCCChh----hHHHHHHHHhhhCccccCCC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRV----GIENFIRAKYEEKRWIPRGG 76 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~Dr~----~rE~FIRaKYeeK~Fv~~~~ 76 (411)
|+||||||+|||||||||||+||.|++|||++|+.+||.+||+|||++||..+++. .+|+|||+|||+|+|+.++.
T Consensus 49 ~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN~~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~~ 128 (287)
T KOG0703|consen 49 LRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGNAKANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPEE 128 (287)
T ss_pred eecccccccccchhheeeeeeccccCHHHHHHHHHHcchhhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccchh
Confidence 68999999999999999999999999999999999999999999999999887654 49999999999999998762
Q ss_pred CCCCCCccccccccCCCCCCCCCCCccCCCCccCcccccCCCCCCCCCCCCCCCccCCCCccccccccCCCCccCCCCCC
Q 015214 77 NTKSPSRVSEEKASFHRPLPSSSGHRYTNNINRVPDVRNIAHPPNASNDIAAPKHSSPATVKVVQQVTPSLKIQEPVQNS 156 (411)
Q Consensus 77 ~p~~pS~~r~ek~~~~~~~~~R~Gh~srsS~~~~~~~K~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~k~~~~~~~~ 156 (411)
......+.+++.... ...+.|++|.+++- +.- .+ ......+...+-.. .++
T Consensus 129 ~~~s~~~~~~~~~k~-~~~~~~~~~~s~s~------~~~-~~-----~r~~~~~~~~~~~s--------~~~-------- 179 (287)
T KOG0703|consen 129 DITSKPGSRDEESKR-SDKRSRKLSSSLSR------SFV-KS-----AREDQLKYFLPKTS--------QPV-------- 179 (287)
T ss_pred hcccCCCcccccccc-cccCccccccchhh------hhh-hh-----ccccccccccccCC--------CCc--------
Confidence 221111112111110 12233344333321 100 00 00000110010000 000
Q ss_pred CCCCCCCCcchhhhhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCccccccchhhccccCCCCCCCCCCC----CCcc
Q 015214 157 EPTVPKSEPAKQEAITTAVIQHKKQNSEPAVPKYEPPKQEASTTPQRKVDYATDLFNLLCTDDSRENDSKTS----NDEK 232 (411)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvd~atdlf~lL~~d~~~~~~s~~s----~dd~ 232 (411)
.+...+ . .. ........++. +|+..|.+++ +.+++. +.+.
T Consensus 180 -------------~~~~~~---------------~---~~-~~~i~~~~~~~-~~~s~~n~~~---~~~~~~~~~~~~~~ 223 (287)
T KOG0703|consen 180 -------------DDLATF---------------Q---GP-IASPHNLQTTY-SLNSTLNIFG---SGKEAADSFTLRAA 223 (287)
T ss_pred -------------hhhhhc---------------c---Cc-cccccchheee-cccccccccc---CccccCCCcccccc
Confidence 000000 0 00 11456667777 8888888887 333332 7778
Q ss_pred cccccccccccccCCCCCCCccccccchhhhHHhhhcCCCCCCCCcccccchhhhhhhhhhhccccccCCchhhHH
Q 015214 233 SCANLQSTNASTAEPINSSKATESKVQTRYRIEDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQ 308 (411)
Q Consensus 233 ~~a~fqsa~~s~~~~~~~~~~~es~~~s~~~iedlf~~sp~v~~s~~~~~q~dvkndimslfeks~~vspf~~hqq 308 (411)
.|+.|+.+...+.+...+..+..+....-...+ ++++.+..+. . . .|++|| +-..+.||..++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~f~~~~-~~~~~~~~~~---~------~-~~~~~~-~~~~~~~~~~~~~ 287 (287)
T KOG0703|consen 224 RFAPLAVAFSTVTEDLVPFLQRNSLSEGFMEKT-LSKPKRWFGT---Q------Q-SKSSLF-FLDGNVPFGSKES 287 (287)
T ss_pred cccccccccccCccccccccccccccccccCcc-cccccccccc---C------c-cccccc-cccccccccccCC
Confidence 888888887444466666666655554444444 7777444444 2 5 899999 9999999988764
No 2
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=99.89 E-value=4.3e-24 Score=180.58 Aligned_cols=77 Identities=56% Similarity=0.896 Sum_probs=69.9
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCC-------ChhhHHHHHHHHhhhCcccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY-------DRVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~-------Dr~~rE~FIRaKYeeK~Fv~ 73 (411)
++||||||+||+|||+||||+||+|++++|++|+.+||.++|++||+++++.. +...+++|||+||++++|+.
T Consensus 27 ~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 106 (112)
T smart00105 27 IECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQKGGNENANSIWESNLDDFSLKPPDSDDQQKYESFIAAKYEEKLFVP 106 (112)
T ss_pred HHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHHHhhhHHHHHHHHhhCCccccCCCCCchHHHHHHHHHHHHHhhhccc
Confidence 47999999999999999999999999999999999999999999999987532 35679999999999999998
Q ss_pred CCCC
Q 015214 74 RGGN 77 (411)
Q Consensus 74 ~~~~ 77 (411)
+++.
T Consensus 107 ~~~~ 110 (112)
T smart00105 107 PESA 110 (112)
T ss_pred cccC
Confidence 7653
No 3
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=99.86 E-value=5.2e-23 Score=174.73 Aligned_cols=73 Identities=55% Similarity=0.980 Sum_probs=60.4
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCC------CCChhhHHHHHHHHhhhCcccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPP------NYDRVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp------~~Dr~~rE~FIRaKYeeK~Fv~ 73 (411)
++|||+||+||+|||+||||+||+|++++|++|+.+||..+|++||++.+. +.+...+++||++||++++|+.
T Consensus 37 ~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~~GN~~~n~~~e~~~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 37 LECAGIHRSLGVHISRVKSITMDNWSPEEVQRMREGGNKRANSIWEANSPPPKKPPPSSDQEKREQFIRAKYVEKAFIS 115 (116)
T ss_dssp HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHHSHHHHHHHHHTTTSTTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred HHHHHHHHHhcccchhccccccCCCCHHHHHHHHHHChHHHHHHHHcCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence 479999999999999999999999999999999999999999999999422 2335679999999999999985
No 4
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=99.85 E-value=1.7e-21 Score=202.85 Aligned_cols=112 Identities=22% Similarity=0.391 Sum_probs=96.0
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCC-------CCChhhHHHHHHHHhhhCcccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp-------~~Dr~~rE~FIRaKYeeK~Fv~ 73 (411)
++||||||+|| +|||||+||+|+++||++|+.+||+++|+|||++|+. ..+...+++|||+||++|+|+.
T Consensus 47 i~CSGIHRsLG---hRVKSLSLDkWT~EEVe~Mk~gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~ 123 (648)
T PLN03119 47 MACSGIHREFT---HRVKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAG 123 (648)
T ss_pred ccchhhhccCC---ceeeccccCCCCHHHHHHHHHhchHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccC
Confidence 58999999998 4999999999999999999999999999999999753 3345678999999999999999
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCccCCCCc--cC-ccccc
Q 015214 74 RGGNTKSPSRVSEEKASFHRPLPSSSGHRYTNNIN--RV-PDVRN 115 (411)
Q Consensus 74 ~~~~p~~pS~~r~ek~~~~~~~~~R~Gh~srsS~~--~~-~~~K~ 115 (411)
.....+++...++++.........+.+|+.+.|-. .. +|||.
T Consensus 124 ~~~~d~p~~~~~~~~~~~~~~~~~~s~h~~s~sp~y~~~ye~rr~ 168 (648)
T PLN03119 124 ANDADKPSKDSQDHVSSEDMTRRANSYHSYSQSPPYDYQYEERRY 168 (648)
T ss_pred cCCCCCCcccccccccccccccccccCCCCCCCCCcccchhhhhc
Confidence 98888888778888877766778889999988854 44 66665
No 5
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=99.81 E-value=3.3e-20 Score=182.95 Aligned_cols=77 Identities=43% Similarity=0.797 Sum_probs=69.5
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCC--------CCCChhhHHHHHHHHhhhCccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP--------PNYDRVGIENFIRAKYEEKRWI 72 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LP--------p~~Dr~~rE~FIRaKYeeK~Fv 72 (411)
|+||||||+|||||||||||+||.|+.+||++|+.+||.+||+|||.++- ..+|...+++||+.||++++|+
T Consensus 44 i~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~ 123 (319)
T COG5347 44 IDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEVGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFI 123 (319)
T ss_pred eecchhhhccccceeeeeeeecccCCHHHHHHHHHhcchhhhhHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcc
Confidence 68999999999999999999999999999999999999999999999842 2356778999999999999999
Q ss_pred cCCCC
Q 015214 73 PRGGN 77 (411)
Q Consensus 73 ~~~~~ 77 (411)
.....
T Consensus 124 ~~~~~ 128 (319)
T COG5347 124 DDSSS 128 (319)
T ss_pred ccccC
Confidence 76443
No 6
>PLN03131 hypothetical protein; Provisional
Probab=99.74 E-value=1.9e-18 Score=181.44 Aligned_cols=77 Identities=26% Similarity=0.505 Sum_probs=67.0
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCC-------CCChhhHHHHHHHHhhhCcccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp-------~~Dr~~rE~FIRaKYeeK~Fv~ 73 (411)
++||||||+|| +|||||+||+|+++||++|+.+||.+||+|||++|+. +.+...+++|||+||++|+|+.
T Consensus 47 i~CSGIHRsLg---hRVKSVTLD~WtdeEV~~Mk~gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~ 123 (705)
T PLN03131 47 MTCSGIHREFT---HRVKSVSMSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAG 123 (705)
T ss_pred hhchhhhcccC---cccccccCCCCCHHHHHHHHHhccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhc
Confidence 58999999998 4999999999999999999999999999999998753 3445678999999999999998
Q ss_pred CCCCCCC
Q 015214 74 RGGNTKS 80 (411)
Q Consensus 74 ~~~~p~~ 80 (411)
.....++
T Consensus 124 ~~s~d~p 130 (705)
T PLN03131 124 GKTHDKP 130 (705)
T ss_pred CCCCCCC
Confidence 7654433
No 7
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-19 Score=185.99 Aligned_cols=110 Identities=35% Similarity=0.568 Sum_probs=91.3
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCC------CCCChhhHHHHHHHHhhhCccccC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP------PNYDRVGIENFIRAKYEEKRWIPR 74 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LP------p~~Dr~~rE~FIRaKYeeK~Fv~~ 74 (411)
|+|+||||.||+|+||||||.||.|..|-+..|..+||+.||.+||..+- ++..++++|+|||+|||+|.|+.+
T Consensus 537 ieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~aiGN~~AN~vWE~~~~G~~KPs~~s~REEkErwIr~KYeqklFLaP 616 (749)
T KOG0705|consen 537 IECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAIGNDLANSVWEGSSQGQTKPSPDSSREEKERWIRAKYEQKLFLAP 616 (749)
T ss_pred EEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHhhhhHHHHHhhhhccCCcCCCccccHHHHHHHHHHHHHHHhhcCC
Confidence 58999999999999999999999999999999999999999999999652 244578999999999999999988
Q ss_pred CCCCCCCCccccccccCC---CCCCCCCCCccCCCCccC
Q 015214 75 GGNTKSPSRVSEEKASFH---RPLPSSSGHRYTNNINRV 110 (411)
Q Consensus 75 ~~~p~~pS~~r~ek~~~~---~~~~~R~Gh~srsS~~~~ 110 (411)
.+...-|.++.-.+.... +.....+.||+|...+++
T Consensus 617 l~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t 655 (749)
T KOG0705|consen 617 LPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNET 655 (749)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhcc
Confidence 777666666544443321 444566799999887776
No 8
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.54 E-value=9.8e-14 Score=139.47 Aligned_cols=76 Identities=34% Similarity=0.507 Sum_probs=62.0
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcC-CC------CCCh--hhHHHHHHHHhhhCcc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAEL-PP------NYDR--VGIENFIRAKYEEKRW 71 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~L-Pp------~~Dr--~~rE~FIRaKYeeK~F 71 (411)
++||||||.||+|||+|||++||.|++++|++|+.+||.++|.||+.+. .. .|+- ..+-+-+.+|++.+.+
T Consensus 46 l~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk~GGN~rA~~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~ 125 (395)
T PLN03114 46 IDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSK 125 (395)
T ss_pred hhhhHhhccCCCCCceeecccCCCCCHHHHHHHHHhcCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999999999998863 11 1221 1234558888898888
Q ss_pred ccCCC
Q 015214 72 IPRGG 76 (411)
Q Consensus 72 v~~~~ 76 (411)
.....
T Consensus 126 a~~~~ 130 (395)
T PLN03114 126 AEEEL 130 (395)
T ss_pred hcccc
Confidence 75543
No 9
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=8.5e-15 Score=146.35 Aligned_cols=48 Identities=42% Similarity=0.771 Sum_probs=46.4
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAE 48 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~ 48 (411)
|+|||+||.||||||+|||||||+|.+.||+.|+.+||+++++|++..
T Consensus 43 LECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMeaGGN~~~~eFL~s~ 90 (386)
T KOG0704|consen 43 LECSGKHRGLGVHISFVRSVTMDKWKEIELKKMEAGGNERFREFLSSQ 90 (386)
T ss_pred EecCCcccccceeeEEEEeeecccccHHHHHHHHhccchhHHHHHhhC
Confidence 689999999999999999999999999999999999999999999875
No 10
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-14 Score=157.30 Aligned_cols=79 Identities=48% Similarity=0.798 Sum_probs=71.2
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWI 72 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~--------~Dr~~rE~FIRaKYeeK~Fv 72 (411)
|+||||||+||+|||||||++||.|.++.+.+|+.+||..+|.+||+.|+.. .++..|+.||++||++++|.
T Consensus 450 IecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~lgn~~~N~i~e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~ 529 (785)
T KOG0521|consen 450 IECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNLGNKYVNEIYEALLPSYDSSKPTASSSRQAREAWIKAKYVERRFS 529 (785)
T ss_pred hhccccccccCchhhhhhhhhhhccCcHHHHHHHHhCcchhhhhhhcccccccccCCCCccchhhhhHhhhcccceeeEe
Confidence 6899999999999999999999999999999999999999999999999753 23567899999999999998
Q ss_pred cCCCCCC
Q 015214 73 PRGGNTK 79 (411)
Q Consensus 73 ~~~~~p~ 79 (411)
.......
T Consensus 530 ~k~~~~~ 536 (785)
T KOG0521|consen 530 VKEPQIK 536 (785)
T ss_pred ecccchh
Confidence 7766543
No 11
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-13 Score=140.90 Aligned_cols=48 Identities=44% Similarity=0.776 Sum_probs=46.8
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAE 48 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~ 48 (411)
|+||++||+||||||+|||..||+|+.+||++|+.+||.+|+.||..+
T Consensus 47 iDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M~~GGN~nA~~FFkqh 94 (454)
T KOG0706|consen 47 IDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRMQVGGNANARVFFKQH 94 (454)
T ss_pred EecchhhhccccceEEEeecccccCCHHHHhHhhhcCchhHHHHHHHc
Confidence 689999999999999999999999999999999999999999999887
No 12
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=4.5e-10 Score=122.45 Aligned_cols=76 Identities=37% Similarity=0.689 Sum_probs=69.1
Q ss_pred cccccccCCCCCccceeeccCCC--CCHHHHHHHHhhcchHHHHHHhhcCCCCC------ChhhHHHHHHHHhhhCcccc
Q 015214 2 QCSGIHRSLGVHISKVRSATLDT--WLPEQVAVIQSMGNEKSNSYWEAELPPNY------DRVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 2 kCSGIHRsLGvHISKVKSLsLDs--Ws~EqVelMk~gGNs~ANkiwEa~LPp~~------Dr~~rE~FIRaKYeeK~Fv~ 73 (411)
.|+|-||+||.-+|||+|++||. |+.+.++++..+||.++|.||-.++|++. ....|.+||.+||.+.+|..
T Consensus 323 ~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~dssp~~r~~fi~~Kykeg~fRk 402 (1186)
T KOG1117|consen 323 PCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPDSSPSTRRQFIKEKYKEGKFRK 402 (1186)
T ss_pred cCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCCCCcchhhhHHHHHhhcccccc
Confidence 69999999999999999999998 99999999999999999999999999764 34578999999999999986
Q ss_pred CCCC
Q 015214 74 RGGN 77 (411)
Q Consensus 74 ~~~~ 77 (411)
....
T Consensus 403 ~~~~ 406 (1186)
T KOG1117|consen 403 EHPV 406 (1186)
T ss_pred cccc
Confidence 6554
No 13
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.92 E-value=3.8e-10 Score=117.76 Aligned_cols=73 Identities=37% Similarity=0.701 Sum_probs=64.8
Q ss_pred cccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCC------------Ch--hhHHHHHHHHhh
Q 015214 2 QCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY------------DR--VGIENFIRAKYE 67 (411)
Q Consensus 2 kCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~------------Dr--~~rE~FIRaKYe 67 (411)
+|+.+||+||.|||.||+|.-..|.++-|++...+.|..+|.|||..|-++. |. +.+++|||+||+
T Consensus 33 eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tLn~~gaNsIWEh~Lld~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~ 112 (669)
T KOG0818|consen 33 ECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETLNNNGANSIWEHSLLDPATIMSGRRKANPQDKVHPNKAEFIRAKYQ 112 (669)
T ss_pred hhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHHHhcCcchhhhhhccCchhhhcccCCCCCcCCCCccHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999874322 21 357899999999
Q ss_pred hCccccC
Q 015214 68 EKRWIPR 74 (411)
Q Consensus 68 eK~Fv~~ 74 (411)
...|+.+
T Consensus 113 ~LtFv~~ 119 (669)
T KOG0818|consen 113 MLAFVHR 119 (669)
T ss_pred heeeecc
Confidence 9999973
No 14
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=98.01 E-value=7.5e-05 Score=78.60 Aligned_cols=82 Identities=27% Similarity=0.487 Sum_probs=68.5
Q ss_pred cccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhc-------CCCCCChhhHHHHHHHHhhhCccccC
Q 015214 2 QCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAE-------LPPNYDRVGIENFIRAKYEEKRWIPR 74 (411)
Q Consensus 2 kCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~-------LPp~~Dr~~rE~FIRaKYeeK~Fv~~ 74 (411)
.|+|.-|.|- --.|||||+|-+++.-+|..++..||..+.++|-.. +|+..+....++|||.||+.|+|+.+
T Consensus 51 ~~sg~ls~l~-~ahRvksiSmttft~qevs~lQshgNq~~k~i~fkl~D~q~S~vPD~rn~~~~kef~q~~y~~kr~~v~ 129 (524)
T KOG0702|consen 51 MCSGLLSGLN-PAHRVKSISMTTFTDQEVSFLQSHGNQVCKEIWFKLFDFQRSNVPDSRNPQKVKEFQQEKYVKKRYYVP 129 (524)
T ss_pred ccchhhccCC-CccccceeeeeeccccchHHHhhcchhhhhhhhhcchhhhhccCCCcccchhhHHHHhhhhccceeecC
Confidence 5889888885 457999999999999999999999999999999764 56666777889999999999999876
Q ss_pred CCCCCCCCcc
Q 015214 75 GGNTKSPSRV 84 (411)
Q Consensus 75 ~~~p~~pS~~ 84 (411)
......++..
T Consensus 130 ~n~~k~~s~t 139 (524)
T KOG0702|consen 130 KNQMKIPSYT 139 (524)
T ss_pred cccccccccc
Confidence 6555444433
No 15
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=42.89 E-value=7 Score=44.25 Aligned_cols=45 Identities=20% Similarity=0.198 Sum_probs=37.3
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhh
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEA 47 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa 47 (411)
+.|+++||.++.|++..+++-||.-.+ |+....-|+..++..|..
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~ 699 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATAS 699 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhh
Confidence 469999999999999999999998777 777777777777766644
No 16
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=24.60 E-value=38 Score=29.15 Aligned_cols=11 Identities=45% Similarity=0.730 Sum_probs=8.1
Q ss_pred HHHHHHHHhhc
Q 015214 397 LFLICMHLVYH 407 (411)
Q Consensus 397 ~~~~~~~~~~~ 407 (411)
-|.|+|||+++
T Consensus 64 EF~iAm~Li~~ 74 (104)
T PF12763_consen 64 EFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36788888875
No 17
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=23.32 E-value=35 Score=31.09 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=24.1
Q ss_pred HHHHHHhhhccCCCCcccCCccCCCCCCC---------CCccccccCCcccC
Q 015214 309 QSFLAAASVNSNGGSQSFPINVHQPGSNG---------IHVPIQSWGVVGHQ 351 (411)
Q Consensus 309 Q~llMAAa~~~~g~~~~~p~~~~q~~~Ng---------~~lp~qnW~n~gyq 351 (411)
+.+|..|+ +..|.. .+....++-.+.| +||.+|.||-.||=
T Consensus 40 ~~~l~~Aa-~~~gat-iv~~~~h~F~P~GvTgv~lLaESHisIHTwPE~gya 89 (139)
T PRK02770 40 RTTLTEAA-KRAGAT-LLNLITHRFEPQGVTALALLAESHISIHTWPESGYA 89 (139)
T ss_pred HHHHHHHH-HHcCCE-EEEEEeEEcCCCeEEEEEEecccEEEEEeCcCCCcE
Confidence 44555555 555544 2333333323333 46999999999994
Done!