Query 015214
Match_columns 411
No_of_seqs 207 out of 1085
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 99.9 2.7E-25 9.2E-30 194.2 4.1 76 1-76 51-130 (134)
2 2crr_A Stromal membrane-associ 99.9 4.5E-25 1.5E-29 194.2 3.4 76 1-76 53-132 (141)
3 2olm_A Nucleoporin-like protei 99.9 3.8E-23 1.3E-27 181.8 5.8 75 1-76 49-130 (140)
4 3jue_A Arfgap with coiled-coil 99.8 6.5E-22 2.2E-26 191.9 4.7 76 1-76 69-152 (368)
5 3lju_X ARF-GAP with dual PH do 99.8 1.4E-20 4.9E-25 185.1 5.2 75 1-76 58-139 (386)
6 2owa_A Arfgap-like finger doma 99.8 6.1E-20 2.1E-24 161.4 3.8 70 1-70 60-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 99.7 2.6E-19 8.9E-24 159.3 0.0 52 1-52 53-105 (149)
8 3lvq_E ARF-GAP with SH3 domain 99.7 2.1E-18 7.1E-23 169.7 1.3 75 1-75 47-129 (497)
9 3dwd_A ADP-ribosylation factor 99.7 7.8E-18 2.7E-22 149.8 3.7 73 1-73 62-145 (147)
10 1dcq_A PYK2-associated protein 99.7 7.1E-18 2.4E-22 154.9 3.4 75 1-75 41-123 (278)
11 2b0o_E UPLC1; arfgap, structur 99.7 1.1E-17 3.9E-22 155.6 4.8 74 1-74 66-147 (301)
12 3sub_A ADP-ribosylation factor 99.7 1.5E-17 5.2E-22 150.1 2.8 70 1-70 46-116 (163)
13 2p57_A GTPase-activating prote 99.6 3.7E-17 1.3E-21 145.0 2.6 50 1-50 61-111 (144)
14 3o47_A ADP-ribosylation factor 99.5 8.5E-15 2.9E-19 139.2 2.9 50 1-50 61-110 (329)
15 2nnu_B HUNK1 protein, bromodom 28.1 16 0.00053 24.3 0.5 13 285-297 8-20 (26)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=99.91 E-value=2.7e-25 Score=194.18 Aligned_cols=76 Identities=49% Similarity=0.909 Sum_probs=69.6
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCCC----hhhHHHHHHHHhhhCccccCCC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG 76 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~D----r~~rE~FIRaKYeeK~Fv~~~~ 76 (411)
++||||||+||+||||||||+||+|++++|++|+.+||..+|++||+++|..+. ...+|+|||+||++++|+.+..
T Consensus 51 ~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 51 IRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 479999999999999999999999999999999999999999999999987543 3568999999999999997654
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=4.5e-25 Score=194.19 Aligned_cols=76 Identities=47% Similarity=0.907 Sum_probs=69.5
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCCC----hhhHHHHHHHHhhhCccccCCC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYD----RVGIENFIRAKYEEKRWIPRGG 76 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~D----r~~rE~FIRaKYeeK~Fv~~~~ 76 (411)
++||||||+||+||||||||+||.|++++|++|+.+||..+|++||+++|+.+. ...+|+|||+||++++|+.+..
T Consensus 53 ~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 53 IRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGG
T ss_pred hhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCc
Confidence 479999999999999999999999999999999999999999999999987542 3568999999999999997654
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.87 E-value=3.8e-23 Score=181.78 Aligned_cols=75 Identities=28% Similarity=0.534 Sum_probs=66.6
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCC-------CCChhhHHHHHHHHhhhCcccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPP-------NYDRVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp-------~~Dr~~rE~FIRaKYeeK~Fv~ 73 (411)
++||||||+||+| ||||||+||+|++++|++|+.+||..+|+|||+++++ ..|...+++|||+||++++|+.
T Consensus 49 ~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~ 127 (140)
T 2olm_A 49 TSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYV 127 (140)
T ss_dssp HHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCC
T ss_pred hhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeC
Confidence 4799999999997 9999999999999999999999999999999998753 1234578899999999999987
Q ss_pred CCC
Q 015214 74 RGG 76 (411)
Q Consensus 74 ~~~ 76 (411)
+..
T Consensus 128 ~~~ 130 (140)
T 2olm_A 128 PPE 130 (140)
T ss_dssp CHH
T ss_pred Ccc
Confidence 543
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=6.5e-22 Score=191.87 Aligned_cols=76 Identities=49% Similarity=0.760 Sum_probs=68.5
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWI 72 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~--------~Dr~~rE~FIRaKYeeK~Fv 72 (411)
++||||||+||+||||||||+||.|++++|++|+.+||..+|+|||+++|+. .+...+|+|||+||++++|+
T Consensus 69 ~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~ 148 (368)
T 3jue_A 69 IQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 148 (368)
T ss_dssp HHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTC
T ss_pred HhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhccc
Confidence 4799999999999999999999999999999999999999999999998742 23457899999999999998
Q ss_pred cCCC
Q 015214 73 PRGG 76 (411)
Q Consensus 73 ~~~~ 76 (411)
.+..
T Consensus 149 ~~l~ 152 (368)
T 3jue_A 149 TKLP 152 (368)
T ss_dssp CSCC
T ss_pred ccch
Confidence 7543
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.80 E-value=1.4e-20 Score=185.11 Aligned_cols=75 Identities=40% Similarity=0.727 Sum_probs=67.7
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCC------C-hhhHHHHHHHHhhhCcccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNY------D-RVGIENFIRAKYEEKRWIP 73 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~------D-r~~rE~FIRaKYeeK~Fv~ 73 (411)
++||||||+| +|||+||||+||.|++++|++|+.+||..+|++||+++|+.. | ...+|+|||+||++++|+.
T Consensus 58 ~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~ 136 (386)
T 3lju_X 58 LSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIY 136 (386)
T ss_dssp HHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTS
T ss_pred hhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEEC
Confidence 4799999999 999999999999999999999999999999999999998642 1 3468999999999999997
Q ss_pred CCC
Q 015214 74 RGG 76 (411)
Q Consensus 74 ~~~ 76 (411)
++.
T Consensus 137 ~~~ 139 (386)
T 3lju_X 137 PEK 139 (386)
T ss_dssp GGG
T ss_pred Ccc
Confidence 654
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.78 E-value=6.1e-20 Score=161.40 Aligned_cols=70 Identities=30% Similarity=0.483 Sum_probs=61.6
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCC--CC-ChhhHHHHHHHHhhhCc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPP--NY-DRVGIENFIRAKYEEKR 70 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp--~~-Dr~~rE~FIRaKYeeK~ 70 (411)
++||||||+||+||||||||+||+|++++|++|+.+||.++|+|||++... +. .+.+.+.||.+||+++.
T Consensus 60 ~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 60 LNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999995432 22 24678899999999874
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-19 Score=159.28 Aligned_cols=52 Identities=40% Similarity=0.657 Sum_probs=49.2
Q ss_pred CcccccccCCCCCccceeeccCCC-CCHHHHHHHHhhcchHHHHHHhhcCCCC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEKSNSYWEAELPPN 52 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDs-Ws~EqVelMk~gGNs~ANkiwEa~LPp~ 52 (411)
++||||||+||+||||||||+||. |+++||++|+.+||.++|+|||++....
T Consensus 53 ~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~~ 105 (149)
T 2crw_A 53 IDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCST 105 (149)
T ss_dssp HHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCCC
T ss_pred hhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence 479999999999999999999996 9999999999999999999999998764
No 8
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.69 E-value=2.1e-18 Score=169.68 Aligned_cols=75 Identities=41% Similarity=0.637 Sum_probs=67.9
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWI 72 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~--------~Dr~~rE~FIRaKYeeK~Fv 72 (411)
++||||||+||+|||||||++||.|+++++++|+.+||..+|.+||+.+|.. .+...+++||++||++++|.
T Consensus 47 ~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~ 126 (497)
T 3lvq_E 47 IQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFA 126 (497)
T ss_dssp HHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTS
T ss_pred HhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccc
Confidence 4799999999999999999999999999999999999999999999998742 23457899999999999998
Q ss_pred cCC
Q 015214 73 PRG 75 (411)
Q Consensus 73 ~~~ 75 (411)
.+.
T Consensus 127 ~~~ 129 (497)
T 3lvq_E 127 RRC 129 (497)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
No 9
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.69 E-value=7.8e-18 Score=149.84 Aligned_cols=73 Identities=33% Similarity=0.575 Sum_probs=54.5
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCC--CCCCh---------hhHHHHHHHHhhhC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP--PNYDR---------VGIENFIRAKYEEK 69 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LP--p~~Dr---------~~rE~FIRaKYeeK 69 (411)
++||||||+||+||||||||+||.|+++||++|+.+||.++|+|||++.. +..+. ...++.|+++++.+
T Consensus 62 ~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~ 141 (147)
T 3dwd_A 62 LECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGR 141 (147)
T ss_dssp HHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC--
T ss_pred HhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999999999999999999999999742 22221 12467788888888
Q ss_pred cccc
Q 015214 70 RWIP 73 (411)
Q Consensus 70 ~Fv~ 73 (411)
.|..
T Consensus 142 ~w~~ 145 (147)
T 3dwd_A 142 EWSL 145 (147)
T ss_dssp ----
T ss_pred cCCC
Confidence 8864
No 10
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.68 E-value=7.1e-18 Score=154.93 Aligned_cols=75 Identities=37% Similarity=0.650 Sum_probs=67.7
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWI 72 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~--------~Dr~~rE~FIRaKYeeK~Fv 72 (411)
++||||||+||+|||+|||++||.|+++++.+|..+||..+|++||+.+|.. .+...+++||++||+.++|.
T Consensus 41 ~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~ 120 (278)
T 1dcq_A 41 IECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYA 120 (278)
T ss_dssp HHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 4799999999999999999999999999999999999999999999998643 23457899999999999998
Q ss_pred cCC
Q 015214 73 PRG 75 (411)
Q Consensus 73 ~~~ 75 (411)
.+.
T Consensus 121 ~~~ 123 (278)
T 1dcq_A 121 RKK 123 (278)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=155.55 Aligned_cols=74 Identities=42% Similarity=0.655 Sum_probs=67.1
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCC--------CChhhHHHHHHHHhhhCccc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPN--------YDRVGIENFIRAKYEEKRWI 72 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~--------~Dr~~rE~FIRaKYeeK~Fv 72 (411)
++||||||+||+|||||||++||.|+++++.+|..+||..+|++||+.+|.. .+...+++||++||++++|.
T Consensus 66 ~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~ 145 (301)
T 2b0o_E 66 IQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFA 145 (301)
T ss_dssp HHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTS
T ss_pred HHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhh
Confidence 4799999999999999999999999999999999999999999999998753 23457899999999999997
Q ss_pred cC
Q 015214 73 PR 74 (411)
Q Consensus 73 ~~ 74 (411)
.+
T Consensus 146 ~~ 147 (301)
T 2b0o_E 146 RR 147 (301)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 12
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.66 E-value=1.5e-17 Score=150.13 Aligned_cols=70 Identities=36% Similarity=0.517 Sum_probs=56.7
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCCCCCChh-hHHHHHHHHhhhCc
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELPPNYDRV-GIENFIRAKYEEKR 70 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LPp~~Dr~-~rE~FIRaKYeeK~ 70 (411)
++||||||+||+||||||||+||.|++++|++|+.+||.++|+|||++.+...... ....-..++|+++.
T Consensus 46 i~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~L 116 (163)
T 3sub_A 46 INCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKIL 116 (163)
T ss_dssp HHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHHH
T ss_pred HhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCCcccChhhcCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999877655431 12223444555443
No 13
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.7e-17 Score=144.96 Aligned_cols=50 Identities=40% Similarity=0.698 Sum_probs=47.3
Q ss_pred CcccccccCCCCCccceeeccCCC-CCHHHHHHHHhhcchHHHHHHhhcCC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDT-WLPEQVAVIQSMGNEKSNSYWEAELP 50 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDs-Ws~EqVelMk~gGNs~ANkiwEa~LP 50 (411)
++||||||+||+|||+|||++||+ |+++||++|+.+||.++|+|||++.-
T Consensus 61 ~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g~ 111 (144)
T 2p57_A 61 IDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGC 111 (144)
T ss_dssp HHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred hhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcCC
Confidence 479999999999999999999996 99999999999999999999999853
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.48 E-value=8.5e-15 Score=139.15 Aligned_cols=50 Identities=40% Similarity=0.710 Sum_probs=47.7
Q ss_pred CcccccccCCCCCccceeeccCCCCCHHHHHHHHhhcchHHHHHHhhcCC
Q 015214 1 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAVIQSMGNEKSNSYWEAELP 50 (411)
Q Consensus 1 mkCSGIHRsLGvHISKVKSLsLDsWs~EqVelMk~gGNs~ANkiwEa~LP 50 (411)
++||||||+||+||||||||+||.|++++|++|+.+||.++|++||+...
T Consensus 61 ~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~~ 110 (329)
T 3o47_A 61 LECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCSS
T ss_pred hhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999999999999999854
No 15
>2nnu_B HUNK1 protein, bromodomain-containing protein 4; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Homo sapiens}
Probab=28.12 E-value=16 Score=24.26 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=10.5
Q ss_pred hhhhhhhhhhccc
Q 015214 285 DVKNDVMNLFGKS 297 (411)
Q Consensus 285 dvkndimslfeks 297 (411)
+..-|||..||.+
T Consensus 8 n~QSDlMa~FEen 20 (26)
T 2nnu_B 8 NFQSDLLSIFEEN 20 (26)
T ss_pred hhHHHHHHHHHHH
Confidence 5678999999864
Done!