Query 015215
Match_columns 411
No_of_seqs 295 out of 1241
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 100.0 1.9E-28 4.1E-33 212.3 14.6 127 48-175 1-127 (127)
2 cd02126 PA_EDEM3_like PA_EDEM3 99.9 2.9E-22 6.3E-27 173.6 13.6 118 44-175 2-126 (126)
3 cd02122 PA_GRAIL_like PA _GRAI 99.9 3.4E-22 7.4E-27 175.6 14.1 117 45-175 18-138 (138)
4 cd02123 PA_C_RZF_like PA_C-RZF 99.9 5.2E-22 1.1E-26 177.6 15.2 121 40-170 22-142 (153)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 7.7E-22 1.7E-26 168.9 14.2 114 48-176 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.9 2.2E-21 4.8E-26 170.9 14.6 121 39-175 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 5.8E-20 1.2E-24 157.1 11.6 104 45-166 6-110 (117)
8 cd04816 PA_SaNapH_like PA_SaNa 99.8 3.9E-18 8.4E-23 146.9 14.0 115 48-175 7-122 (122)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 1.6E-18 3.4E-23 148.3 11.4 93 66-174 27-119 (120)
10 KOG3920 Uncharacterized conser 99.8 1.6E-19 3.4E-24 157.3 4.6 159 1-174 1-170 (193)
11 cd02130 PA_ScAPY_like PA_ScAPY 99.7 2.2E-17 4.8E-22 142.1 13.8 109 49-175 14-122 (122)
12 cd04818 PA_subtilisin_1 PA_sub 99.7 2.5E-17 5.5E-22 140.8 13.8 113 46-175 2-118 (118)
13 cd02124 PA_PoS1_like PA_PoS1_l 99.7 3.8E-16 8.2E-21 135.8 11.7 91 67-175 39-129 (129)
14 KOG4628 Predicted E3 ubiquitin 99.7 1.1E-15 2.3E-20 151.2 13.3 115 41-168 35-150 (348)
15 cd04817 PA_VapT_like PA_VapT_l 99.6 2.5E-15 5.4E-20 131.9 13.0 102 49-169 27-135 (139)
16 PF02225 PA: PA domain; Inter 99.5 2E-14 4.4E-19 118.5 7.1 72 86-165 30-101 (101)
17 cd00538 PA PA: Protease-associ 99.5 8.9E-14 1.9E-18 119.0 11.1 98 67-174 28-125 (126)
18 KOG2442 Uncharacterized conser 99.4 8.6E-13 1.9E-17 133.4 10.3 127 43-186 56-185 (541)
19 cd02133 PA_C5a_like PA_C5a_lik 99.4 6.1E-12 1.3E-16 111.2 14.0 106 47-175 15-120 (143)
20 cd04819 PA_2 PA_2: Protease-as 99.4 1.4E-11 2.9E-16 107.0 13.5 104 56-174 21-126 (127)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.2 3.4E-11 7.4E-16 105.5 8.8 103 55-175 14-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.1 4.9E-10 1.1E-14 96.3 10.0 85 68-170 36-121 (126)
23 PF02128 Peptidase_M36: Fungal 99.1 1.3E-11 2.8E-16 123.6 -1.5 152 189-373 192-367 (378)
24 cd02128 PA_TfR PA_TfR: Proteas 98.9 5.6E-09 1.2E-13 95.7 9.1 123 48-179 19-164 (183)
25 cd02121 PA_GCPII_like PA_GCPII 98.3 2.6E-06 5.6E-11 80.6 9.8 124 56-193 43-207 (220)
26 cd04814 PA_M28_1 PA_M28_1: Pro 98.3 2.6E-06 5.6E-11 75.3 8.1 70 46-124 11-100 (142)
27 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 3.9E-06 8.4E-11 74.9 8.2 96 56-166 18-133 (151)
28 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 9.8E-06 2.1E-10 71.2 7.3 63 56-124 20-96 (137)
29 cd02131 PA_hNAALADL2_like PA_h 97.9 2.6E-05 5.6E-10 69.2 6.9 107 55-167 12-139 (153)
30 cd03023 DsbA_Com1_like DsbA fa 96.2 0.014 3.1E-07 50.5 7.1 86 298-394 68-153 (154)
31 cd04821 PA_M28_1_2 PA_M28_1_2: 94.0 0.074 1.6E-06 47.9 4.4 37 87-123 47-102 (157)
32 PF13462 Thioredoxin_4: Thiore 93.8 1.3 2.7E-05 38.8 12.0 84 298-394 77-160 (162)
33 cd03024 DsbA_FrnE DsbA family, 90.1 0.54 1.2E-05 43.0 5.3 69 319-394 131-200 (201)
34 cd03022 DsbA_HCCA_Iso DsbA fam 87.5 0.79 1.7E-05 41.4 4.4 65 322-393 126-190 (192)
35 cd03019 DsbA_DsbA DsbA family, 83.0 1.5 3.3E-05 38.9 4.0 60 319-385 99-158 (178)
36 PF01323 DSBA: DSBA-like thior 82.6 1.3 2.8E-05 40.0 3.4 69 319-394 123-192 (193)
37 KOG3160 Gamma-interferon induc 70.7 5.1 0.00011 38.1 3.8 87 310-407 127-216 (220)
38 PRK10954 periplasmic protein d 69.1 4.2 9.2E-05 37.8 2.9 75 298-383 106-180 (207)
39 KOG2195 Transferrin receptor a 65.0 7.3 0.00016 43.2 4.2 36 88-123 183-218 (702)
40 PF13192 Thioredoxin_3: Thiore 52.7 7.3 0.00016 30.1 1.2 26 367-392 46-73 (76)
41 TIGR00411 redox_disulf_1 small 48.5 20 0.00043 27.2 3.0 27 368-394 51-78 (82)
42 TIGR02196 GlrX_YruB Glutaredox 46.4 43 0.00094 24.3 4.6 26 368-394 48-73 (74)
43 cd03082 TRX_Fd_NuoE_W_FDH_beta 41.6 29 0.00064 26.8 3.0 26 368-394 44-69 (72)
44 COG1651 DsbG Protein-disulfide 39.6 67 0.0014 30.2 5.8 88 298-394 150-239 (244)
45 cd03025 DsbA_FrnE_like DsbA fa 34.3 31 0.00067 30.9 2.4 53 321-380 127-179 (193)
46 cd04727 pdxS PdxS is a subunit 32.0 45 0.00098 32.9 3.2 68 100-170 15-89 (283)
47 cd03081 TRX_Fd_NuoE_FDH_gamma 31.9 52 0.0011 25.8 3.0 26 368-394 52-77 (80)
48 TIGR02194 GlrX_NrdH Glutaredox 30.1 1.2E+02 0.0027 22.6 4.8 55 323-392 16-70 (72)
49 cd03026 AhpF_NTD_C TRX-GRX-lik 27.0 55 0.0012 26.2 2.5 26 366-391 61-87 (89)
50 COG5540 RING-finger-containing 27.0 18 0.00039 36.0 -0.5 34 92-125 149-182 (374)
51 TIGR00343 pyridoxal 5'-phospha 26.6 62 0.0013 32.0 3.1 55 100-157 17-77 (287)
52 COG4882 Predicted aminopeptida 26.3 5.1E+02 0.011 26.9 9.5 71 89-163 89-161 (486)
53 COG0695 GrxC Glutaredoxin and 25.9 1.7E+02 0.0037 22.8 5.1 57 322-390 17-73 (80)
54 PHA03050 glutaredoxin; Provisi 25.8 1.3E+02 0.0029 25.0 4.7 55 322-384 29-83 (108)
55 cd02976 NrdH NrdH-redoxin (Nrd 25.6 2.1E+02 0.0045 20.4 5.4 25 368-393 48-72 (73)
56 COG1905 NuoE NADH:ubiquinone o 25.2 54 0.0012 29.7 2.3 25 368-393 128-152 (160)
57 TIGR00412 redox_disulf_2 small 24.4 66 0.0014 24.7 2.4 26 368-393 47-74 (76)
58 cd03027 GRX_DEP Glutaredoxin ( 23.1 1.7E+02 0.0036 21.9 4.4 47 322-382 17-63 (73)
59 cd04468 S1_eIF5A S1_eIF5A: Euk 22.4 2.5E+02 0.0054 21.8 5.2 30 143-176 26-55 (69)
60 PF07172 GRP: Glycine rich pro 21.4 52 0.0011 27.1 1.3 14 11-24 15-28 (95)
61 PF06764 DUF1223: Protein of u 21.1 1.4E+02 0.003 28.0 4.2 55 341-399 45-99 (202)
62 TIGR02181 GRX_bact Glutaredoxi 20.9 1.8E+02 0.0038 22.0 4.2 47 323-383 16-62 (79)
63 PF10419 TFIIIC_sub6: TFIIIC s 20.6 67 0.0014 21.4 1.5 15 372-386 11-25 (35)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.96 E-value=1.9e-28 Score=212.35 Aligned_cols=127 Identities=62% Similarity=1.063 Sum_probs=106.4
Q ss_pred cCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCc
Q 015215 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL 127 (411)
Q Consensus 48 ~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l 127 (411)
|||.|+||++++|.|++++++.+||++++....+.+.++...++|+||+||+|+|.+|++|||++||++|||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999999999999997632122223456799999999999999999999999999999999988877
Q ss_pred eecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 128 ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 128 ~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
+.|..++++. ..++..+++||+++|++++|+.|++.+++|..|+++|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887554321 1133457899999999999999999999999998874
No 2
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=2.9e-22 Score=173.62 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=94.8
Q ss_pred eeeccCCCCCCCC-ceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeC
Q 015215 44 CAIGNFGVPQYGG-TLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (411)
Q Consensus 44 ~~~a~FG~~~~g~-~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn 122 (411)
..+|+||.+.... .+.|.|+. .+|.+||++..++ ...+++|+||+||+|+|.+|+++||++||+||||+|+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~-------~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~ 73 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNA-------EEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDN 73 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEe-CCchhcccCCCCc-------cccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEEC
Confidence 3578999888764 68898876 4678999988653 2357999999999999999999999999999999998
Q ss_pred CCCC------ceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 123 KTEP------LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 123 ~~~~------l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
.+++ ++.|....+ ....++||+++|++.+|+.|++.++++..|++.+
T Consensus 74 ~~~~~~~~~~~~~m~~~~~------~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 74 NEGSSSDTAPMFAMSGDGD------STDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCCccccccceeEeecCCC------CCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 7642 345532110 1236899999999999999999999998888754
No 3
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.88 E-value=3.4e-22 Score=175.62 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=96.2
Q ss_pred eeccCCCCCCCCceEEEEec--ccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeC
Q 015215 45 AIGNFGVPQYGGTLIGTVVY--PKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (411)
Q Consensus 45 ~~a~FG~~~~g~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn 122 (411)
.+|+||.+.++..+.|.|++ +.++.+||+++++.. ..+...++||||+||+|+|.+|++|||++||++|||||+
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~----~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~ 93 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFP----IPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNN 93 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCcccc----CCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 37999999999999998764 456789999987620 013457999999999999999999999999999999999
Q ss_pred CC--CCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 123 KT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 123 ~~--~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
.+ +.++.|... ....||+++|++++|+.|++++++|.+|++++
T Consensus 94 ~~~~~~~~~m~~~----------~~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 94 PGTGNETVKMSHP----------GTGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCCceeeccCC----------CCCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 85 235666422 13488999999999999999999999888763
No 4
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.88 E-value=5.2e-22 Score=177.57 Aligned_cols=121 Identities=29% Similarity=0.450 Sum_probs=100.5
Q ss_pred ceeeeeeccCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEE
Q 015215 40 GVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILV 119 (411)
Q Consensus 40 ~~y~~~~a~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII 119 (411)
..|+..+|+||.+++++.++|.|++ .+|.+||++++.+. + ..+...++|+||+||+|+|.+|++|||++||+||||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~--~-~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP--L-NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc--c-ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 4688899999999999999999875 56789999987531 1 113457999999999999999999999999999999
Q ss_pred EeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCe
Q 015215 120 ADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEM 170 (411)
Q Consensus 120 ~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~ 170 (411)
+|+.++.+..|...+. ....++||+++|++++|+.|++.++.++.
T Consensus 98 ~n~~~~~~~~m~~~~~------~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGNDQ------EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCCC------CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9998777777752211 12478999999999999999999998876
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=7.7e-22 Score=168.93 Aligned_cols=114 Identities=25% Similarity=0.358 Sum_probs=92.2
Q ss_pred cCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCC--
Q 015215 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE-- 125 (411)
Q Consensus 48 ~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~-- 125 (411)
.||.+..+....|.|+ +.+|.+||++..+. +..+++|+||+||+|+|.+|++|||++||+||||||+.++
T Consensus 1 ~~~~~~~~~~~~~~lv-~~~p~~gC~~~~~~-------~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLV-PADPLEACEELRNI-------HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEE-ECCccccCCCCCCc-------cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 4888877777777775 46788999987653 2457999999999999999999999999999999998754
Q ss_pred -CceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEE
Q 015215 126 -PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLD 176 (411)
Q Consensus 126 -~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~ 176 (411)
..+.|... +....++||+++|++++|+.|++.+++|..|.+.+.
T Consensus 73 ~~~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 33566422 123478999999999999999999999998877653
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=2.2e-21 Score=170.87 Aligned_cols=121 Identities=31% Similarity=0.426 Sum_probs=97.2
Q ss_pred cceeeeeeccCCCCCCC---CceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCc
Q 015215 39 KGVYECAIGNFGVPQYG---GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAA 115 (411)
Q Consensus 39 ~~~y~~~~a~FG~~~~g---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~ 115 (411)
...|...+|.||...+. ..+.+.++. .++.+||+++++ .++++|+||+||+|+|.+|++|||++||+
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~---------~~~g~IvLV~RG~C~F~~K~~nA~~aGA~ 85 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS---------KLSGSIALVERGECAFTEKAKIAEAGGAS 85 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc---------ccCCeEEEEECCCCCHHHHHHHHHHcCCc
Confidence 35789999999976654 346777755 567899998763 24799999999999999999999999999
Q ss_pred EEEEEeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 116 AILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 116 avII~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
+|||||+.++ +..|....+ +....++||+++|++++|+.|+++|++|..|++++
T Consensus 86 avIv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 86 ALLIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 9999998754 455642221 12336899999999999999999999998888763
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.82 E-value=5.8e-20 Score=157.11 Aligned_cols=104 Identities=29% Similarity=0.332 Sum_probs=83.8
Q ss_pred eeccCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCC
Q 015215 45 AIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKT 124 (411)
Q Consensus 45 ~~a~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~ 124 (411)
..|.||++. ...+++.. ..+|.+||++++. +.++++||||+||+|+|.+|++|||++||++|||||+.+
T Consensus 6 ~~~~~~~~~-~~~~~~~~--~~~p~~gC~~~~~--------~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 6 RYASFSPIL-NPHLRGSY--KVSPTDACSLQEH--------AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred cccccCCcc-Cccccccc--cCCCCCCCCCCCc--------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 357899665 45677764 4678899998843 245799999999999999999999999999999999876
Q ss_pred C-CceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHh
Q 015215 125 E-PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (411)
Q Consensus 125 ~-~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~ 166 (411)
+ .+++|..+++ ...++||+++|++++|+.|+..+.
T Consensus 75 ~~~~~~m~~~~~-------~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 75 GRGLITMFSNGD-------TDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred cccceecccCCC-------CCCcEEEEEEEcHHHHHHHHHhcc
Confidence 4 4566753322 357899999999999999998874
No 8
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.78 E-value=3.9e-18 Score=146.86 Aligned_cols=115 Identities=21% Similarity=0.327 Sum_probs=88.3
Q ss_pred cCCCCCCCCceEEEEecccC-CccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 015215 48 NFGVPQYGGTLIGTVVYPKA-NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (411)
Q Consensus 48 ~FG~~~~g~~l~G~lv~~~~-~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~ 126 (411)
.|++...++.++|.|++... ..+||++.+... +.++|+|+||+||+|+|.+|++|||++||++|||+|+.++.
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~------~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~ 80 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDG------LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGG 80 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCC------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCc
Confidence 46655556789999988543 358999875432 24589999999999999999999999999999999987643
Q ss_pred ceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 127 LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 127 l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
...+.. .+ .....+||+++|++++|+.|++.+++|.+|++++
T Consensus 81 ~~~~~~-~~------~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 81 GTAGTL-GA------PNIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred cccccc-cC------CCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 221110 10 0135789999999999999999999998877653
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.78 E-value=1.6e-18 Score=148.28 Aligned_cols=93 Identities=25% Similarity=0.274 Sum_probs=72.6
Q ss_pred cCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCC
Q 015215 66 KANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQN 145 (411)
Q Consensus 66 ~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~ 145 (411)
.+|..||++.+... ..++++|+||+||+|+|.+|++|||++||+|||||||.+.. .+. +. .+....
T Consensus 27 ~~~~~gC~~~~~~~------~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~--~~----~~~~~~ 92 (120)
T cd02129 27 LTSSVLCSASDVPP------GGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPS--GN----RSEYEK 92 (120)
T ss_pred CCCcCCCCccccCc------cccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCC--CC----CCCCcC
Confidence 56789999876531 24579999999999999999999999999999999987532 111 11 111257
Q ss_pred cceeEEEEehHhHHHHHHHHhCCCeEEEE
Q 015215 146 ITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (411)
Q Consensus 146 i~IPsv~Is~~~G~~L~~~l~~g~~V~v~ 174 (411)
++||++||++++|+.|++.+.++ |+|.
T Consensus 93 v~IP~v~Is~~dG~~i~~~l~~~--~~v~ 119 (120)
T cd02129 93 IDIPVALLSYKDMLDIQQTFGDS--VKVA 119 (120)
T ss_pred CcccEEEEeHHHHHHHHHHhccC--cEEe
Confidence 89999999999999999999655 5543
No 10
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.77 E-value=1.6e-19 Score=157.33 Aligned_cols=159 Identities=21% Similarity=0.284 Sum_probs=122.4
Q ss_pred CcchhhHHHHHHHHhhccccee----EEEee-ceEEEEccccccceeeeeecc-CCCCCCCCceEEEEecccCCccCCCC
Q 015215 1 MREKLGFLVGILFLLCGLSFGR----FVVEK-NSLKVTSPEKIKGVYECAIGN-FGVPQYGGTLIGTVVYPKANQKACKG 74 (411)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~----fvve~-~~l~V~~P~~l~~~y~~~~a~-FG~~~~g~~l~G~lv~~~~~~~gC~~ 74 (411)
|.+..||+|+++|+.+..+++- +.... ..|+|++|.+|+.+|+..+|. ||.... .++.+.-.++++|..||+.
T Consensus 1 M~p~gWl~l~~~L~~~vaa~~~~~~~v~~qD~~~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~e 79 (193)
T KOG3920|consen 1 MKPRGWLLLSFLLIIQVAAAKIPYEEVENQDNMLFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEE 79 (193)
T ss_pred CCcceehHHHHHHHHHHHHccCCcceeeecceEEEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHH
Confidence 8888899999999986543331 33332 458899999999999999984 997653 4677765567899999999
Q ss_pred CCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC-----ceecCCCCcccccccccCCccee
Q 015215 75 FDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-----LITMDTPEEENADAEYLQNITIP 149 (411)
Q Consensus 75 ~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~-----l~~m~~p~~~~~~~~~~~~i~IP 149 (411)
+.+.- ...+.|+|++||+|+|..|.+|+|+|||.|+||.|+.... .+.|- |++ +....+||
T Consensus 80 lrN~~-------f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI-~D~------sq~~AniP 145 (193)
T KOG3920|consen 80 LRNEI-------FAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMI-PDE------SQDRANIP 145 (193)
T ss_pred Hhhcc-------cCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhc-Ccc------cccccCCc
Confidence 98741 2357899999999999999999999999999999876432 35664 322 34578999
Q ss_pred EEEEehHhHHHHHHHHhCCCeEEEE
Q 015215 150 SALISKSLGDSIKKSLSGGEMVNMN 174 (411)
Q Consensus 150 sv~Is~~~G~~L~~~l~~g~~V~v~ 174 (411)
++++-..+|-.++..|+.-..+.+.
T Consensus 146 a~fllg~~Gy~ir~sL~r~~r~ha~ 170 (193)
T KOG3920|consen 146 AVFLLGVTGYYIRVSLKRYFRDHAK 170 (193)
T ss_pred eEEEeccceEEEehhHHHhCCccEE
Confidence 9999999999988888764433333
No 11
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.75 E-value=2.2e-17 Score=142.07 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=84.0
Q ss_pred CCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCce
Q 015215 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLI 128 (411)
Q Consensus 49 FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~ 128 (411)
|+..++ +..+|+|++. +.+||++.+.+ .+++++|+||+||+|+|.+|++||+++||++|||||+......
T Consensus 14 ~~~~~~-~~~~g~lv~~--~~~gC~~~~~~-------~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~ 83 (122)
T cd02130 14 FTYSPA-GEVTGPLVVV--PNLGCDAADYP-------ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGL 83 (122)
T ss_pred cccCCC-CCcEEEEEEe--CCCCCCcccCC-------cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 554444 4568999874 46799986543 1358999999999999999999999999999999998732211
Q ss_pred ecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 129 TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 129 ~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
....+ ......||+++|++++|+.|++.+++|..|+++|
T Consensus 84 ~~~~~--------~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 84 SGTLG--------EPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ccccC--------CCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 11101 1235789999999999999999999999888764
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.75 E-value=2.5e-17 Score=140.82 Aligned_cols=113 Identities=33% Similarity=0.536 Sum_probs=91.0
Q ss_pred eccCCCCCCC---CceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeC
Q 015215 46 IGNFGVPQYG---GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (411)
Q Consensus 46 ~a~FG~~~~g---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn 122 (411)
+|.||..... ..+.|.++. .++.++|++.... ++.+|+|+|++||+|+|.+|+++|+++||+++||+|+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~-------~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNA-------AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcC-------CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 5889976653 347777764 6788999987652 2368999999999999999999999999999999998
Q ss_pred CCC-CceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 123 KTE-PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 123 ~~~-~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
.++ ..+.|..+ .....||+++|++++|+.|++++++|..|+++|
T Consensus 74 ~~~~~~~~~~~~---------~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGD---------DPDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCC---------CCCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 764 23456421 124689999999999999999999988888764
No 13
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=3.8e-16 Score=135.85 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=71.9
Q ss_pred CCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCc
Q 015215 67 ANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (411)
Q Consensus 67 ~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~i 146 (411)
++.+||++++.. + ++++++|+||+||+|+|.+|++|||++||++|||||+.++.. .|. .. ...
T Consensus 39 ~~~~gC~~~~~~---~---~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~--~~--------~~~ 101 (129)
T cd02124 39 VADDACQPLPDD---T---PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQV--GS--------DAD 101 (129)
T ss_pred CCcccCcCCCcc---c---ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-ccc--CC--------CCc
Confidence 567899988542 1 346799999999999999999999999999999999876543 332 11 123
Q ss_pred ceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 147 TIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 147 ~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
.||.+++ +++|+.|+++|++|..|+++|
T Consensus 102 ~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 102 SIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred ceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 4566666 999999999999998888764
No 14
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-15 Score=151.22 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=94.0
Q ss_pred eeeeeeccCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEE
Q 015215 41 VYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVA 120 (411)
Q Consensus 41 ~y~~~~a~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~ 120 (411)
++...+|+||+....+.+.|.++ +++|.+||+++.+.... .+....+++||.||+|+|.+|++|||++|++|+|||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~-~~ep~~aC~~i~~~p~~---~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLV-VAEPLNACNPITNFPEH---STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeeee-cCCCccccCccccCccC---CCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 78888999999998888999774 57788999998763111 234568999999999999999999999999999999
Q ss_pred eCCCC-CceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCC
Q 015215 121 DDKTE-PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGG 168 (411)
Q Consensus 121 nn~~~-~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g 168 (411)
||.+. .++.|. .+ ..++.||++||+...|+.|++.....
T Consensus 111 nn~~~~~lv~~~--~~-------~~~v~i~~~~vs~~~ge~l~~~~~~~ 150 (348)
T KOG4628|consen 111 NNVGSEDLVAMA--SN-------PSKVDIHIVFVSVFSGELLSSYAGRT 150 (348)
T ss_pred cCCCCchheeec--cC-------CccceeEEEEEeeehHHHHHHhhccc
Confidence 98764 456663 22 24799999999999999999976444
No 15
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.64 E-value=2.5e-15 Score=131.92 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=73.6
Q ss_pred CCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCC-----HHHHHHHHHhcCCcEEEEEeCC
Q 015215 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY-----FTLKAWNAQKGGAAAILVADDK 123 (411)
Q Consensus 49 FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~Cs-----F~~Kv~nAq~aGA~avII~nn~ 123 (411)
|-.-...+.++|.|++.. .-+|+-.. .+.+|+|+||+||+|+ |.+|++|||++||+|||||||.
T Consensus 27 ~~s~~~~g~~tg~lv~~g--~~g~d~~~---------~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~ 95 (139)
T cd04817 27 YASMPVTGSATGSLYYCG--TSGGSYIC---------GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNA 95 (139)
T ss_pred ccccccCCcceEEEEEcc--CCCccccC---------CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCC
Confidence 433333457889887643 34463211 1347999999999999 9999999999999999999997
Q ss_pred --CCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCC
Q 015215 124 --TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGE 169 (411)
Q Consensus 124 --~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~ 169 (411)
++.+..|- .+ ....++||+++|++++|+.|++.|.++.
T Consensus 96 ~~~g~~~~~l--g~------~~~~~~IP~v~is~~dG~~L~~~l~~~~ 135 (139)
T cd04817 96 ALAGLQNPFL--VD------TNNDTTIPSVSVDRADGQALLAALGQST 135 (139)
T ss_pred CCCCcccccc--cC------CCCCceEeEEEeeHHHHHHHHHHhcCCC
Confidence 33222221 11 0125799999999999999999996553
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.52 E-value=2e-14 Score=118.48 Aligned_cols=72 Identities=29% Similarity=0.416 Sum_probs=54.8
Q ss_pred CCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHH
Q 015215 86 PGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSL 165 (411)
Q Consensus 86 ~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l 165 (411)
...+++|||++||.|+|.+|++|||++||+||||+|..+.. ..+. .. .....++||+++|++++|+.|++++
T Consensus 30 ~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~-~~~~--~~-----~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 30 SDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNN-GSMI--DS-----EDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp STCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSC-TTTT--CE-----BTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccc-cCcc--cc-----cCCCCcEEEEEEeCHHHHhhhhccC
Confidence 35689999999999999999999999999999999922111 1111 11 1234689999999999999999875
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.52 E-value=8.9e-14 Score=119.02 Aligned_cols=98 Identities=26% Similarity=0.326 Sum_probs=74.8
Q ss_pred CCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCc
Q 015215 67 ANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (411)
Q Consensus 67 ~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~i 146 (411)
.+..+|.+... ++. ...++|+|+|++||+|+|.+|+++|+++||+|+||+++.+.....|....+ .....
T Consensus 28 ~~~~~C~~~~~---~~~-~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~ 97 (126)
T cd00538 28 GPLVGCGYGTT---DDS-GADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDP 97 (126)
T ss_pred cceEEEecCcc---ccc-CCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCC
Confidence 45678988751 010 134689999999999999999999999999999999987643333321111 02356
Q ss_pred ceeEEEEehHhHHHHHHHHhCCCeEEEE
Q 015215 147 TIPSALISKSLGDSIKKSLSGGEMVNMN 174 (411)
Q Consensus 147 ~IPsv~Is~~~G~~L~~~l~~g~~V~v~ 174 (411)
.||+++|++++|+.|+++++++..|.++
T Consensus 98 ~iP~~~is~~~g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 98 SIPTVGISYADGEALLSLLEAGKTVTVD 125 (126)
T ss_pred cEeEEEeCHHHHHHHHHHHhcCCceEEe
Confidence 8999999999999999999998877765
No 18
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.41 E-value=8.6e-13 Score=133.40 Aligned_cols=127 Identities=28% Similarity=0.348 Sum_probs=93.0
Q ss_pred eeeeccCCCCCCCCceEEEEec---ccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEE
Q 015215 43 ECAIGNFGVPQYGGTLIGTVVY---PKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILV 119 (411)
Q Consensus 43 ~~~~a~FG~~~~g~~l~G~lv~---~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII 119 (411)
....+.||..+..- -.+...+ -.+|.|-|++...+ ++++++++.||+|+|.+|+++||++||.|++|
T Consensus 56 a~~~~~~~~t~~~~-~~~a~~~~~a~~~pld~cs~~~~k---------l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLli 125 (541)
T KOG2442|consen 56 AGMLARFGITLPSK-CKAADIPHLAQVDPLDSCSTLQSK---------LSGKVALVFRGNCSFTEKAKLAQAAGASALLI 125 (541)
T ss_pred hhhhhhcCCcCCCC-ccccccchhhhcCCccccCCCCcc---------ccceeEEEecccceeehhhhhhhhcCceEEEE
Confidence 34567788655321 1121111 13678889887642 47999999999999999999999999999999
Q ss_pred EeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEEeccCCCCCCc
Q 015215 120 ADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDE 186 (411)
Q Consensus 120 ~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~~~~~~p~~d~ 186 (411)
+||..+ +.-|..-.. ....+++||++||++++|+.|.+....++.|++.++-. +-|.-|-
T Consensus 126 in~~~d-~~~~~~~~~-----~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaP-k~P~vD~ 185 (541)
T KOG2442|consen 126 INNKKD-LLFMPCGNK-----ETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAP-KRPAVDY 185 (541)
T ss_pred EcCchh-hccCCCCCC-----CccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECC-CCCCccH
Confidence 999764 334432111 23468999999999999999999888899999999863 3444443
No 19
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.40 E-value=6.1e-12 Score=111.20 Aligned_cols=106 Identities=21% Similarity=0.175 Sum_probs=77.0
Q ss_pred ccCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 015215 47 GNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (411)
Q Consensus 47 a~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~ 126 (411)
..|+.+...+...+.+++.. .|.+.+.. ...++|+|+|++||+|+|.+|+++|+++||++|||+|+..+.
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g----~g~~~d~~------~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG----LGTPEDFE------GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc----CCchhccC------CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 34566555567888888753 22322221 124689999999999999999999999999999999987543
Q ss_pred ceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 127 LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 127 l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
..|. . .....||+++|++++|+.|++.+++ .+.+++
T Consensus 85 -~~~~--~--------~~~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~ 120 (143)
T cd02133 85 -IPGT--L--------GEAVFIPVVFISKEDGEALKAALES--SKKLTF 120 (143)
T ss_pred -cccc--C--------CCCCeEeEEEecHHHHHHHHHHHhC--CCeEEE
Confidence 2221 1 1135799999999999999999987 344443
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.36 E-value=1.4e-11 Score=106.98 Aligned_cols=104 Identities=20% Similarity=0.078 Sum_probs=75.8
Q ss_pred CceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCC--CHHHHHHHHHhcCCcEEEEEeCCCCCceecCCC
Q 015215 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC--YFTLKAWNAQKGGAAAILVADDKTEPLITMDTP 133 (411)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C--sF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p 133 (411)
+.++|.+++.. .| .+-+..+ .+++|+||||+||.| +|..|+++|+++||+||||+|+.++.+..+...
T Consensus 21 ~~~~~~lV~~g---~G-~~~d~~~------~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~ 90 (127)
T cd04819 21 GEAKGEPVDAG---YG-LPKDFDG------LDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDE 90 (127)
T ss_pred CCeeEEEEEeC---CC-CHHHcCC------CCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccc
Confidence 46899998853 22 2111111 236899999999999 999999999999999999998776543222111
Q ss_pred CcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEE
Q 015215 134 EEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (411)
Q Consensus 134 ~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~ 174 (411)
.. .......||++.|++++|+.|++.++.|+.|.++
T Consensus 91 ~~-----~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 91 GT-----EDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred cc-----cCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 10 1123468999999999999999999998877654
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.23 E-value=3.4e-11 Score=105.47 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=76.1
Q ss_pred CCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCC------CHHHH-------HHHHHhcCCcEEEEEe
Q 015215 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC------YFTLK-------AWNAQKGGAAAILVAD 121 (411)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C------sF~~K-------v~nAq~aGA~avII~n 121 (411)
++.++|++++..++ + .+.. +. ...++|+||||+||.| +|..| ..+|+++||.|+||+|
T Consensus 14 ~~gvta~vv~v~~~--~--~~~~----~~-~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s 84 (134)
T cd04815 14 PEGITAEVVVVKSF--D--ELKA----AP-AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRS 84 (134)
T ss_pred CCCcEEEEEEECCH--H--HHHh----cc-hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEe
Confidence 35699999875421 1 2211 10 1346899999999999 99999 6999999999999999
Q ss_pred CCCCC---c--eecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEE
Q 015215 122 DKTEP---L--ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (411)
Q Consensus 122 n~~~~---l--~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l 175 (411)
+.+.. . -+|..+ .....||++.|+.++|+.|.+.+++|..|+++|
T Consensus 85 ~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 85 IGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred cCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 75432 1 122111 224679999999999999999999998888764
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.10 E-value=4.9e-10 Score=96.34 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=67.2
Q ss_pred CccCCCCCCCCCCcccCCCCCCCeEEEEeccCC-CHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCc
Q 015215 68 NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC-YFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (411)
Q Consensus 68 ~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C-sF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~i 146 (411)
...+|++..... ...+|+|||++||.| +|..|+.+|+++||.|+|++++..+.. .+. ....
T Consensus 36 ~~~~C~~~~~~~------~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~ 97 (126)
T cd02120 36 DASLCLPGSLDP------SKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAH 97 (126)
T ss_pred ccccCCCCCCCh------hhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------cccc
Confidence 346898764321 245799999999999 999999999999999999999865431 211 1135
Q ss_pred ceeEEEEehHhHHHHHHHHhCCCe
Q 015215 147 TIPSALISKSLGDSIKKSLSGGEM 170 (411)
Q Consensus 147 ~IPsv~Is~~~G~~L~~~l~~g~~ 170 (411)
.||+++|++++|+.|+++++++..
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCC
Confidence 799999999999999999987643
No 23
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=99.07 E-value=1.3e-11 Score=123.62 Aligned_cols=152 Identities=19% Similarity=0.302 Sum_probs=106.9
Q ss_pred eEEEeecCCCCCC---C-cchhhHHHHHHhHHHHHHHhhCCceeEEEEEEEeecchh---------hhhhhccccccccC
Q 015215 189 EYEFWTNSNDECG---P-KCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEA---------FILSKQCKSQCINH 255 (411)
Q Consensus 189 e~~~w~~s~d~~g---~-~c~~~~~fi~~f~~~a~~l~~~g~~~f~p~~~~~~c~~~---------~~~~~~~~~~Ci~~ 255 (411)
||.| ..|+++.| + .|..+.+ ...| +|||+||+.++++.+-.+. +...+. ..
T Consensus 192 Ey~H-GiSnRLvgG~~~s~cL~~~e--------~~~m-GEGWsD~~Al~~~~~~~d~~~~~~~~G~y~~~~~------~~ 255 (378)
T PF02128_consen 192 EYGH-GISNRLVGGPANSSCLQNLE--------SGGM-GEGWSDFFALMMTMKPGDTRDTDYGIGTYVTGNP------TD 255 (378)
T ss_pred eecc-cccccccCCCcccccccccc--------cCCC-cccHHHHHHHHheecccccCCCCceeeeeecCCc------cc
Confidence 9999 77999987 2 5753321 3566 5999999999999875431 221211 24
Q ss_pred CccccCCC-CCCCcCC-CCchhhHHHHHHHhhhhhhcccCCCCchh--------hHHHHHHhhhCCccchhhhHHHHHHH
Q 015215 256 GRYCAPDP-EQDFSRG-YDGKDVVVQNLRQACFFKVANESRKPWLW--------WDYVTDFAIRCPMKEKKYTKECAEQV 325 (411)
Q Consensus 256 Gryc~~dP-~~~~~~~-~sG~dvv~e~lRqlci~~~~~~~~~~~~W--------W~Yv~~f~~~C~~~~~~y~~~C~~~v 325 (411)
|+.+++.| ++++..+ ++.+++... .+...|.++.+| |.+|+++++.- ..|+.+.++.+
T Consensus 256 g~GIR~~pYSt~~~~Np~tY~~i~~~--------~~~~~H~~GeVWA~~Lwe~~~~Lv~~~G~~~----~~~~~~~Gn~~ 323 (378)
T PF02128_consen 256 GAGIRRYPYSTDMTVNPLTYGDIGRD--------GVSEVHAIGEVWATMLWEVYWALVDKHGFSP----DLYNGTGGNNR 323 (378)
T ss_pred ccccccccccCCcCCCCCcHhhhccC--------cccccccCcchHHHHHHHHHHHHHHHhCCCC----cccccccHHHH
Confidence 56677777 3454432 444444110 112236777788 99999999976 46777789999
Q ss_pred HHHhCCChhhcccccCCc-cCcccchHHHHHHHHHhCCCCCCceEEeeE
Q 015215 326 IKSLGVDLKKVDECVGDP-EADVDNQVLKTEQDAQIGKGSRGDVTILPT 373 (411)
Q Consensus 326 ~~~l~id~~~v~~C~~~~-~~d~~n~iL~~e~~~q~~~~~~~~v~~~Pt 373 (411)
+++|.+|..|++.| +| ++++||+||++++....+. ..+.||-+
T Consensus 324 ~~~lv~dgmklqPc--nPtf~daRDAIl~Ad~~~~gGa---n~c~IW~a 367 (378)
T PF02128_consen 324 AMQLVVDGMKLQPC--NPTFVDARDAILQADQALYGGA---NACLIWKA 367 (378)
T ss_pred HHHHHHHHHhcCCC--CCChHHHHHHHHHHHHHHhCCc---hHHHHHHH
Confidence 99999999999999 77 8999999999998876554 56777643
No 24
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.90 E-value=5.6e-09 Score=95.67 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=76.2
Q ss_pred cCCCCCCCCceEEEEecccCCccCCCCCCCCCCccc-CCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 015215 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (411)
Q Consensus 48 ~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~ 126 (411)
.|-.-...++++|.+||. +.| ...+.. .+. ..-..+|+||||+||.|+|.+|+++||++||+|||||++..+.
T Consensus 19 ~f~~~s~~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~ 92 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADF 92 (183)
T ss_pred cccCCCCCCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHc
Confidence 454333346789999986 234 222111 011 0124689999999999999999999999999999999874211
Q ss_pred -------------------ceecCCCCcccc---cccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEEecc
Q 015215 127 -------------------LITMDTPEEENA---DAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTE 179 (411)
Q Consensus 127 -------------------l~~m~~p~~~~~---~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~~~~ 179 (411)
..|.+.|..... ......-.+||++=||..+++.|++.|. |.. +--+|+.
T Consensus 93 ~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~-G~~--~p~~w~g 164 (183)
T cd02128 93 PIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMG-GPV--CPSGWKG 164 (183)
T ss_pred CcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcC-CCC--CCccccC
Confidence 011111111000 0000123579999999999999999995 332 2346743
No 25
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.34 E-value=2.6e-06 Score=80.58 Aligned_cols=124 Identities=23% Similarity=0.281 Sum_probs=79.3
Q ss_pred CceEEEEecccCCccCCCCCCCCCCccc-CCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC--------
Q 015215 56 GTLIGTVVYPKANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-------- 126 (411)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~-------- 126 (411)
+.++|.+||.. .|...+.. .+. ..-+++|+|||+++|.|.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyvn----yG~~~D~~--~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~ 116 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFE--YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENG 116 (220)
T ss_pred CCceEEEEEcC----CCcHHHHH--HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccccccc
Confidence 46899999853 45433221 111 0124689999999999999999999999999999999874221
Q ss_pred ------------ceec-------CCCCcc-c----ccc--------cccCCcceeEEEEehHhHHHHHHHHhCCCeEEEE
Q 015215 127 ------------LITM-------DTPEEE-N----ADA--------EYLQNITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (411)
Q Consensus 127 ------------l~~m-------~~p~~~-~----~~~--------~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~ 174 (411)
-+.. ..++|- + +.. ....-.+||+.=||..+++.|++.|.... +-
T Consensus 117 ~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p 193 (220)
T cd02121 117 KTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---AP 193 (220)
T ss_pred ccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CC
Confidence 0000 011110 0 000 01123579999999999999999997432 44
Q ss_pred EEeccCCCCCCcceeEEEe
Q 015215 175 LDWTEALPHPDERVEYEFW 193 (411)
Q Consensus 175 l~~~~~~p~~d~~ve~~~w 193 (411)
-+|+..++ +.|.+|
T Consensus 194 ~~W~g~l~-----~~y~~g 207 (220)
T cd02121 194 SDWQGGLP-----VTYRLG 207 (220)
T ss_pred ccccCCCC-----CceeeC
Confidence 57765542 566665
No 26
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.29 E-value=2.6e-06 Score=75.26 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=52.7
Q ss_pred eccCCCCCCCCceEEEEecccC--CccCCCCCCCCCCcccCCCCCCCeEEEEeccCC------------------CHHHH
Q 015215 46 IGNFGVPQYGGTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC------------------YFTLK 105 (411)
Q Consensus 46 ~a~FG~~~~g~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~C------------------sF~~K 105 (411)
+.+|+.+ ..+++.+|+... ...+|.-.++.+ -+++||||||.||+| +|..|
T Consensus 11 ~~~~~~~---~~~~aelVfvGyGi~a~~~~~dDYag------~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K 81 (142)
T cd04814 11 MLNVDAV---AIKDAPLVFVGYGIKAPELSWDDYAG------LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYK 81 (142)
T ss_pred ccCCCCc---cccceeeEEecCCcCCCCCChhhcCC------CCCCCcEEEEEcCCCCcccccccccccccccccCHHHH
Confidence 4455533 457888887642 234676554432 246899999999999 79999
Q ss_pred HHHHHhcCCcEEEEEeCCC
Q 015215 106 AWNAQKGGAAAILVADDKT 124 (411)
Q Consensus 106 v~nAq~aGA~avII~nn~~ 124 (411)
+.+|+++||+||||+++.+
T Consensus 82 ~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 82 YEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHCCCcEEEEEeCCC
Confidence 9999999999999999864
No 27
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.24 E-value=3.9e-06 Score=74.93 Aligned_cols=96 Identities=19% Similarity=0.123 Sum_probs=65.3
Q ss_pred CceEEEEecccC--CccCCCCCCCCCCcccCCCCCCCeEEEEeccC------------------CCHHHHHHHHHhcCCc
Q 015215 56 GTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGD------------------CYFTLKAWNAQKGGAA 115 (411)
Q Consensus 56 ~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~------------------CsF~~Kv~nAq~aGA~ 115 (411)
+.++|.+|+... ...+|...++.+ -+++|+||||.||+ |+|..|+.+|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~g------iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAG------LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccC------CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 578999998652 245676554432 24689999999985 9999999999999999
Q ss_pred EEEEEeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHh
Q 015215 116 AILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (411)
Q Consensus 116 avII~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~ 166 (411)
|||||++..+.. +.++ .......+ .++.|+....+.+..++.
T Consensus 92 aVIv~~d~~~~~-----~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 92 AVIVVNGPNSHS-----GDAD---RLPRFGGT-APQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEEEeCCcccC-----cccc---cccccCcc-ceEEechHHHHHHhhhhh
Confidence 999999865431 1110 00000111 177888888888777643
No 28
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.09 E-value=9.8e-06 Score=71.19 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=49.4
Q ss_pred CceEEEEecccC--CccCCCCCCCCCCcccCCCCCCCeEEEEeccCCC------------HHHHHHHHHhcCCcEEEEEe
Q 015215 56 GTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY------------FTLKAWNAQKGGAAAILVAD 121 (411)
Q Consensus 56 ~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~Cs------------F~~Kv~nAq~aGA~avII~n 121 (411)
+.++|.||+... ...+|...+..+ -+++|+||||+||.|. +..|+++|+++||+||||++
T Consensus 20 g~v~gelVfvGyG~~~~~~~~~Dy~~------iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 20 ASVEAPLVFVGYGLVAPELGHDDYAG------LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCceEeEEEecCCcCccCcCHhhccC------CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 568999988642 345676544432 2468999999999995 88999999999999999998
Q ss_pred CCC
Q 015215 122 DKT 124 (411)
Q Consensus 122 n~~ 124 (411)
+..
T Consensus 94 d~~ 96 (137)
T cd04820 94 TPR 96 (137)
T ss_pred CCc
Confidence 753
No 29
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.93 E-value=2.6e-05 Score=69.21 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=66.9
Q ss_pred CCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCc-------
Q 015215 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL------- 127 (411)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l------- 127 (411)
.++++|++||.. .|=.. +.. .+...=+++|+|+|++.|.-++..||+|||++||+|||||.+..+.-
T Consensus 12 sG~Vtg~~VYvN---yG~~e-Df~--~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~ 85 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVE-DLR--RIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWH 85 (153)
T ss_pred CCceEEEEEEec---CCCHH-HHH--HHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCcc
Confidence 357999999863 11110 000 01001235799999999999999999999999999999998752210
Q ss_pred --e--ecCCCCcc-c----c--cc---cccCCcceeEEEEehHhHHHHHHHHhC
Q 015215 128 --I--TMDTPEEE-N----A--DA---EYLQNITIPSALISKSLGDSIKKSLSG 167 (411)
Q Consensus 128 --~--~m~~p~~~-~----~--~~---~~~~~i~IPsv~Is~~~G~~L~~~l~~ 167 (411)
. .+..++|- | + +. ....-.+||+.=||..++..|.++-.+
T Consensus 86 ~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~~ 139 (153)
T cd02131 86 QAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPPS 139 (153)
T ss_pred ceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCcc
Confidence 0 11101210 0 0 00 011235799999999999998876543
No 30
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.25 E-value=0.014 Score=50.49 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=58.5
Q ss_pred hhhHHHHHHhhhCCccchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEc
Q 015215 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 377 (411)
.+|+|....-..= ...+..=-..+++++|+|..++++|+.+.. ....++++...-.. .+|.-.||++||
T Consensus 68 ~~~~~~~~lf~~~----~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~gi~gtPt~~v~ 136 (154)
T cd03023 68 KYLEFHNALMATR----GRLNEESLLRIAKKAGLDEAKLKKDMDDPE---IEATIDKNRQLARA----LGITGTPAFIIG 136 (154)
T ss_pred HHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHhhChH---HHHHHHHHHHHHHH----cCCCcCCeEEEC
Confidence 6888887653321 112233345678899999999999986532 23455555432212 347889999999
Q ss_pred CeeeeccCChhHHHHHH
Q 015215 378 NRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 378 ~~~yrG~l~~~~v~~aI 394 (411)
|+.+.|..+.+.+.++|
T Consensus 137 g~~~~G~~~~~~l~~~i 153 (154)
T cd03023 137 DTVIPGAVPADTLKEAI 153 (154)
T ss_pred CEEecCCCCHHHHHHHh
Confidence 99999999988887765
No 31
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.01 E-value=0.074 Score=47.93 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCCeEEEEeccCCCH-------------------HHHHHHHHhcCCcEEEEEeCC
Q 015215 87 GGLPTFLLVDRGDCYF-------------------TLKAWNAQKGGAAAILVADDK 123 (411)
Q Consensus 87 ~~~g~IvLV~RG~CsF-------------------~~Kv~nAq~aGA~avII~nn~ 123 (411)
+++||||||.+|+=.| ..|...|+++||+|||++++.
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4678888888776433 359999999999999999764
No 32
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.79 E-value=1.3 Score=38.77 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=50.8
Q ss_pred hhhHHHHHHhhhCCccchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEc
Q 015215 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 377 (411)
.||.+...+...-. ... .. .++..+-+.+..++++|+.+... . ..++++...-.. .+|.--||++||
T Consensus 77 ~~~~~~~~~~~~~~---~~~-~~--~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~----~~i~~tPt~~in 143 (162)
T PF13462_consen 77 YFWFFHELLFSQQE---NFE-NK--KDIAANAGGSNEQFNKCLNSDEI--K-AQLEADSQLARQ----LGITGTPTFFIN 143 (162)
T ss_dssp HHHHHHHHHHHHCH---STS-SH--HHHHHHTTSHHHHHHHHHTSHHH--H-HHHHHHHHHHHH----HT-SSSSEEEET
T ss_pred HHHHHHHHHHHhhh---ccc-hh--HHHHHHcCCCHHHHHHHhhchHH--H-HHHHHHHHHHHH----cCCccccEEEEC
Confidence 68877775544321 111 12 45555556668889999864421 2 233332221111 336677999999
Q ss_pred CeeeeccCChhHHHHHH
Q 015215 378 NRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 378 ~~~yrG~l~~~~v~~aI 394 (411)
|+.+.|..+.+.+.++|
T Consensus 144 G~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 144 GKYVVGPYTIEELKELI 160 (162)
T ss_dssp TCEEETTTSHHHHHHHH
T ss_pred CEEeCCCCCHHHHHHHH
Confidence 99999999998887766
No 33
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.08 E-value=0.54 Score=42.95 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCe-eeeccCChhHHHHHH
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNR-QYRGKLDKGAVLKAI 394 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~-~yrG~l~~~~v~~aI 394 (411)
.+--.++++.+|+|.+++.+|+.++.. .. .|+++...-.. .+|.-.||++|||+ ...|-.+.+...++|
T Consensus 131 ~~~l~~~a~~~Gld~~~~~~~~~~~~~--~~-~~~~~~~~a~~----~gv~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 131 RDVLVDLAEEAGLDAAEARAVLASDEY--AD-EVRADEARARQ----LGISGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhcCccc--ch-HHHHHHHHHHH----CCCCcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 345567888999999999999976532 23 33333332212 34788999999986 458888877776665
No 34
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=87.46 E-value=0.79 Score=41.43 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=44.2
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHH
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKA 393 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~a 393 (411)
-.++++++|+|.+++++++.++. ....+-+....++ . .+|.-.||++|||+.|.|.-.-+-+..+
T Consensus 126 l~~~a~~~Gld~~~~~~~~~~~~--~~~~l~~~~~~a~-~----~gi~gvPtfvv~g~~~~G~~~l~~~~~~ 190 (192)
T cd03022 126 LAAVAAAAGLDADELLAAADDPA--VKAALRANTEEAI-A----RGVFGVPTFVVDGEMFWGQDRLDMLEEA 190 (192)
T ss_pred HHHHHHHcCCCHHHHHHHcCCHH--HHHHHHHHHHHHH-H----cCCCcCCeEEECCeeecccccHHHHHHH
Confidence 45678889999999999986543 2333333332222 2 3478899999999999998665554443
No 35
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=83.01 E-value=1.5 Score=38.90 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccC
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKL 385 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l 385 (411)
.+--.++++++|+|.+++++|+.+.. .+..++.+...-.. .+|.--||++|||+.+-+-.
T Consensus 99 ~~~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~~~~~----~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 99 PDDIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEKLAKK----YKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEChh
Confidence 34467788899999999999986442 22345544332212 34788899999999876543
No 36
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=82.63 E-value=1.3 Score=40.00 Aligned_cols=69 Identities=19% Similarity=0.331 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCe-eeeccCChhHHHHHH
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNR-QYRGKLDKGAVLKAI 394 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~-~yrG~l~~~~v~~aI 394 (411)
.+=-..++.++|+|.+++.+-+.++. ....|+++....... +|.-.|+++|||+ .+.|.-..+.+.++|
T Consensus 123 ~~vl~~~~~~~Gld~~~~~~~~~~~~---~~~~~~~~~~~a~~~----gv~GvP~~vv~g~~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 123 PDVLAEIAEEAGLDPDEFDAALDSPE---VKAALEEDTAEARQL----GVFGVPTFVVNGKYRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHTSHH---HHHHHHHHHHHHHHT----TCSSSSEEEETTTEEEESCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHhcchH---HHHHHHHHHHHHHHc----CCcccCEEEECCEEEEECCCCHHHHHHHh
Confidence 34457788899999999998886542 223444444433222 3678899999999 899997777776665
No 37
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=70.70 E-value=5.1 Score=38.14 Aligned_cols=87 Identities=16% Similarity=0.434 Sum_probs=54.0
Q ss_pred CCccchhhh--HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCCh
Q 015215 310 CPMKEKKYT--KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDK 387 (411)
Q Consensus 310 C~~~~~~y~--~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~ 387 (411)
|-+..+.++ .+| ++..+++..+++.|.... -+ +.||...-... . .....+-++|.+.|||..++-.+..
T Consensus 127 C~~~~~~~~~~~~C----~~~~~~~~~~i~~Ca~s~--~g-~~L~~~~~~~T-~-~~~p~~~~VPwi~vNg~~~~~~~~~ 197 (220)
T KOG3160|consen 127 CIQGKQKLSEAEDC----LEKYGLNEKKIRECANSR--LG-AKLLLKYAQET-A-ALAPPHPWVPWILVNGQPLQDAEQD 197 (220)
T ss_pred hhhcccchhHHHHH----HhhcCCCHHHHHHHhcCc--hH-HHHHHHHHHhh-c-ccCCCCCCcCeEEECCcchHHHHHH
Confidence 665533443 344 455677799999997432 12 22333221222 2 2346789999999999999877665
Q ss_pred hHHHHHHhcCCCCC-CCCCCc
Q 015215 388 GAVLKAICAGFQET-TEPAIC 407 (411)
Q Consensus 388 ~~v~~aIC~~f~~~-~~P~~C 407 (411)
...-||..|+.. +.|..|
T Consensus 198 --l~~~~C~~~~~~~~~~~~~ 216 (220)
T KOG3160|consen 198 --LVTLLCEAYKGKKQKPLKC 216 (220)
T ss_pred --HHHHHHHHHhhccccCccc
Confidence 778899888753 234444
No 38
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=69.13 E-value=4.2 Score=37.83 Aligned_cols=75 Identities=9% Similarity=0.062 Sum_probs=45.6
Q ss_pred hhhHHHHHHhhhCCccchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEc
Q 015215 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 377 (411)
.||.+.+.+..+ . ...+..=-.+++...|+|.+++++|+.+.. ....++++.... .+.+|.--||++||
T Consensus 106 ~~~~lf~~i~~~---~-~~~~~~~L~~~a~~~Gld~~~f~~~l~s~~---~~~~v~~~~~~a----~~~gI~gtPtfiIn 174 (207)
T PRK10954 106 VTPPLFEGVQKT---Q-TIQSAADIRDVFIKAGVKGEDYDAAWNSFV---VKSLVAQQEKAA----ADLQLRGVPAMFVN 174 (207)
T ss_pred HHHHHHHHHHcc---C-CCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHH----HHcCCCCCCEEEEC
Confidence 455666665332 1 123333355677889999999999996542 223444433321 12347778999999
Q ss_pred Ceeeec
Q 015215 378 NRQYRG 383 (411)
Q Consensus 378 ~~~yrG 383 (411)
|+..-+
T Consensus 175 Gky~v~ 180 (207)
T PRK10954 175 GKYMVN 180 (207)
T ss_pred CEEEEc
Confidence 997654
No 39
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=65.04 E-value=7.3 Score=43.21 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=33.4
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCC
Q 015215 88 GLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123 (411)
Q Consensus 88 ~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~ 123 (411)
.+|+|+|++=|.-++..|+.||+.+||.+||+|.+.
T Consensus 183 ~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 183 LSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred ccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 579999999999999999999999999999999754
No 40
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=52.67 E-value=7.3 Score=30.09 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=17.4
Q ss_pred ceEEeeEEEEcCee-eeccC-ChhHHHH
Q 015215 367 DVTILPTLVINNRQ-YRGKL-DKGAVLK 392 (411)
Q Consensus 367 ~v~~~Ptl~IN~~~-yrG~l-~~~~v~~ 392 (411)
+|.-.|+++|||+. |.|++ +.+.+.+
T Consensus 46 gv~~vPalvIng~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 46 GVMSVPALVINGKVVFVGRVPSKEELKE 73 (76)
T ss_dssp T-SSSSEEEETTEEEEESS--HHHHHHH
T ss_pred CCCCCCEEEECCEEEEEecCCCHHHHHH
Confidence 36788999999995 89944 4444443
No 41
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=48.49 E-value=20 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=20.7
Q ss_pred eEEeeEEEEcCe-eeeccCChhHHHHHH
Q 015215 368 VTILPTLVINNR-QYRGKLDKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~IN~~-~yrG~l~~~~v~~aI 394 (411)
+...||++|||. .+.|..+.+.+.++|
T Consensus 51 v~~vPt~~~~g~~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 51 IMAVPAIVINGDVEFIGAPTKEELVEAI 78 (82)
T ss_pred CccCCEEEECCEEEEecCCCHHHHHHHH
Confidence 567899999997 667877777766554
No 42
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=46.39 E-value=43 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=19.2
Q ss_pred eEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 368 VTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
+...|+++++|..+.| .+++.+.++|
T Consensus 48 ~~~vP~~~~~~~~~~g-~~~~~i~~~i 73 (74)
T TIGR02196 48 QRGVPVIVIGHKIIVG-FDPEKLDQLL 73 (74)
T ss_pred CCcccEEEECCEEEee-CCHHHHHHHh
Confidence 3567999999999888 4766665543
No 43
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=41.59 E-value=29 Score=26.79 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.4
Q ss_pred eEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 368 VTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
+..=|++.||++.| ++++++.|-+++
T Consensus 44 C~~gP~v~V~~~~~-~~~t~~~i~~~~ 69 (72)
T cd03082 44 CERAPAALVGQRPV-DGATPAAVAAAV 69 (72)
T ss_pred cCCCCeEEECCEEe-CCcCHHHHHHHH
Confidence 34449999999877 799998886654
No 44
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.60 E-value=67 Score=30.22 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=47.2
Q ss_pred hhhHHHHHH-hhhCCccchhhhHHHHHHHHHHhCCCh-hhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEE
Q 015215 298 LWWDYVTDF-AIRCPMKEKKYTKECAEQVIKSLGVDL-KKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLV 375 (411)
Q Consensus 298 ~WW~Yv~~f-~~~C~~~~~~y~~~C~~~v~~~l~id~-~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~ 375 (411)
.+|.|.+.. +.+=.. ......|.....+...... .+...|.. + ..-..+++..+..=.. .+|.-=||++
T Consensus 150 ~y~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~i~~~~~~a~~----~gv~gTPt~~ 220 (244)
T COG1651 150 RYWAFHDALFGSQAEA--WAASILCAKDLAKADLAALDEGKKAKLN-Q--KACDALIAKNYKLAQQ----LGVNGTPTFI 220 (244)
T ss_pred hHHHHHHHHhhccccc--hhhhhhhhhhhhhhhHHHHHhhhhhccC-h--HHHHHHHHHHHHHHHh----cCCCcCCeEE
Confidence 366666653 332211 1222455555444333222 56666653 1 1123344443332111 2367779999
Q ss_pred EcCeeeeccCChhHHHHHH
Q 015215 376 INNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 376 IN~~~yrG~l~~~~v~~aI 394 (411)
|||..|.|.+..+.+.+.|
T Consensus 221 v~~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 221 VNGKLVPGLPDLDELKAII 239 (244)
T ss_pred ECCeeecCCCCHHHHHHHH
Confidence 9999999999877776655
No 45
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.32 E-value=31 Score=30.94 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCee
Q 015215 321 CAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQ 380 (411)
Q Consensus 321 C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~ 380 (411)
=-..+++++|+|.+++.+++.++.. .. .|++++..-.. -+|.-.||++|++..
T Consensus 127 ~l~~ia~~~Gld~~~~~~~~~s~~~--~~-~l~~~~~~a~~----~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 127 VLRELAIELGLDVEEFLEDFQSDEA--KQ-AIQEDQKLARE----LGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHH--HH-HHHHHHHHHHH----cCCCccCEEEEEeCC
Confidence 3456788899999999999865532 33 34433332212 237889999998763
No 46
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=32.03 E-value=45 Score=32.92 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHhcCCcEEEEEeCCCCC------ceecCCCCcccccccccCCcceeEEEEehHhH-HHHHHHHhCCCe
Q 015215 100 CYFTLKAWNAQKGGAAAILVADDKTEP------LITMDTPEEENADAEYLQNITIPSALISKSLG-DSIKKSLSGGEM 170 (411)
Q Consensus 100 CsF~~Kv~nAq~aGA~avII~nn~~~~------l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G-~~L~~~l~~g~~ 170 (411)
-+-.++++-|++|||.+|++-+..+.+ .--|++|.+- -.....++||++.+-|.+- .........|-.
T Consensus 15 v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvD 89 (283)
T cd04727 15 VTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGVD 89 (283)
T ss_pred eCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCCC
Confidence 455789999999999999997765432 2345544431 1122357999999988763 233333444543
No 47
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=31.88 E-value=52 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=19.7
Q ss_pred eEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 368 VTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
+..=|.+.||+..| ++++++.|-+.|
T Consensus 52 C~~gP~~~v~~~~~-~~~~~e~i~~il 77 (80)
T cd03081 52 CACSPAAMIDGEVH-GRVDPEKFDALL 77 (80)
T ss_pred cCCCCEEEECCEEE-CCCCHHHHHHHH
Confidence 34459999999988 688998876544
No 48
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=30.06 E-value=1.2e+02 Score=22.63 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=33.4
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHH
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLK 392 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~ 392 (411)
.+.+++.+++...++- + .++-+.+++.. .|. .-.|.|+|||...-|..+++.+-+
T Consensus 16 k~~L~~~~i~~~~~di-------~-~~~~~~~~~~~-~g~------~~vP~v~~~g~~~~~G~~~~~~~~ 70 (72)
T TIGR02194 16 KKALEEHGIAFEEINI-------D-EQPEAIDYVKA-QGF------RQVPVIVADGDLSWSGFRPDKLKA 70 (72)
T ss_pred HHHHHHCCCceEEEEC-------C-CCHHHHHHHHH-cCC------cccCEEEECCCcEEeccCHHHHHh
Confidence 5677888887655421 1 23334444332 232 468999999986767778776643
No 49
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=26.96 E-value=55 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=19.5
Q ss_pred CceEEeeEEEEcCe-eeeccCChhHHH
Q 015215 366 GDVTILPTLVINNR-QYRGKLDKGAVL 391 (411)
Q Consensus 366 ~~v~~~Ptl~IN~~-~yrG~l~~~~v~ 391 (411)
.+|...||++|||. .++|+.+.+.++
T Consensus 61 ~~V~~vPt~vidG~~~~~G~~~~~e~~ 87 (89)
T cd03026 61 RGIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred cCCccCCEEEECCEEEEeCCCCHHHHh
Confidence 34788999999986 458877666654
No 50
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=18 Score=35.95 Aligned_cols=34 Identities=6% Similarity=-0.012 Sum_probs=30.4
Q ss_pred EEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCC
Q 015215 92 FLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE 125 (411)
Q Consensus 92 IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~ 125 (411)
+.++.||+|+..+|.+-+++.|-+|||..++...
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~ 182 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNG 182 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCC
Confidence 4567899999999999999999999999998754
No 51
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=26.65 E-value=62 Score=32.04 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhcCCcEEEEEeCCC------CCceecCCCCcccccccccCCcceeEEEEehHh
Q 015215 100 CYFTLKAWNAQKGGAAAILVADDKT------EPLITMDTPEEENADAEYLQNITIPSALISKSL 157 (411)
Q Consensus 100 CsF~~Kv~nAq~aGA~avII~nn~~------~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~ 157 (411)
-+-.++++-|++|||.||+.-...+ +...-|+.|.+- -..-..++||++.+-+..
T Consensus 17 v~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I---~~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 17 VVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMI---KEIMDAVSIPVMAKVRIG 77 (287)
T ss_pred eCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHH---HHHHHhCCCCEEEEeecc
Confidence 3557899999999999999966543 233456655441 122345799999987765
No 52
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=26.30 E-value=5.1e+02 Score=26.86 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=45.6
Q ss_pred CCeEEEEeccCCCHHHHHH--HHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHH
Q 015215 89 LPTFLLVDRGDCYFTLKAW--NAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKK 163 (411)
Q Consensus 89 ~g~IvLV~RG~CsF~~Kv~--nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~ 163 (411)
.|.+++.+|-.--...|.. .|.++||.|+|+-.+.+..+++- +|-... .......||++.+...++..++.
T Consensus 89 ~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~---Gd~gy~-~~s~PtPIPva~v~en~~~y~~~ 161 (486)
T COG4882 89 GGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTG---GDWGYS-VSSSPTPIPVAVVPENYSRYAEE 161 (486)
T ss_pred CCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEec---cccccc-CCCCCCCcceEEeccCcchhhcc
Confidence 5788888876555555543 78899999999986654443332 221000 01235689999999988877663
No 53
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=1.7e+02 Score=22.80 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=32.7
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHH
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAV 390 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v 390 (411)
+.+.+...|++-..+.--.. ...-.+ +..... .| ..-.|.|+||++..-|.-+..++
T Consensus 17 ak~~L~~~g~~~~~i~~~~~------~~~~~~-~~~~~~-~g----~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 17 AKRLLDRKGVDYEEIDVDDD------EPEEAR-EMVKRG-KG----QRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred HHHHHHHcCCCcEEEEecCC------cHHHHH-HHHHHh-CC----CCCcCEEEECCEEEeCcccHHHH
Confidence 46788888888766654421 111222 222222 12 36789999999977665444443
No 54
>PHA03050 glutaredoxin; Provisional
Probab=25.77 E-value=1.3e+02 Score=24.97 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeecc
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~ 384 (411)
+.++++++++....++.. +-.....+.-+.+++....|+ .-.|.|+|||+..-|-
T Consensus 29 ak~~L~~~~i~~~~~~~i--~i~~~~~~~~~~~~l~~~tG~------~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 29 ALDILNKFSFKRGAYEIV--DIKEFKPENELRDYFEQITGG------RTVPRIFFGKTSIGGY 83 (108)
T ss_pred HHHHHHHcCCCcCCcEEE--ECCCCCCCHHHHHHHHHHcCC------CCcCEEEECCEEEeCh
Confidence 366788888743322222 111111233344444433333 4689999999887654
No 55
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=25.63 E-value=2.1e+02 Score=20.44 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=18.6
Q ss_pred eEEeeEEEEcCeeeeccCChhHHHHH
Q 015215 368 VTILPTLVINNRQYRGKLDKGAVLKA 393 (411)
Q Consensus 368 v~~~Ptl~IN~~~yrG~l~~~~v~~a 393 (411)
+.-.|+|+++|....| .+...+.++
T Consensus 48 ~~~vP~i~~~~~~i~g-~~~~~l~~~ 72 (73)
T cd02976 48 YRSVPVVVIGDEHLSG-FRPDKLRAL 72 (73)
T ss_pred CcccCEEEECCEEEec-CCHHHHHhh
Confidence 4678999999988876 566655544
No 56
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=25.22 E-value=54 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEeeEEEEcCeeeeccCChhHHHHH
Q 015215 368 VTILPTLVINNRQYRGKLDKGAVLKA 393 (411)
Q Consensus 368 v~~~Ptl~IN~~~yrG~l~~~~v~~a 393 (411)
|..-|.+.||+..| |+++++.+.+-
T Consensus 128 C~~AP~vmind~~~-~~lt~e~l~ei 152 (160)
T COG1905 128 CGQAPVVMINDDVY-GRLTPEKLEEI 152 (160)
T ss_pred cccCCEEEECCchh-ccCCHHHHHHH
Confidence 55669999999999 56999877553
No 57
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=24.44 E-value=66 Score=24.66 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=18.0
Q ss_pred eEEeeEEEEcC-eeeeccC-ChhHHHHH
Q 015215 368 VTILPTLVINN-RQYRGKL-DKGAVLKA 393 (411)
Q Consensus 368 v~~~Ptl~IN~-~~yrG~l-~~~~v~~a 393 (411)
+...||++||| ..+.|.. +.+.+.+.
T Consensus 47 v~~vPti~i~G~~~~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 47 VTATPGVAVDGELVIMGKIPSKEEIKEI 74 (76)
T ss_pred CCcCCEEEECCEEEEEeccCCHHHHHHH
Confidence 67889999998 5667864 33444443
No 58
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=23.08 E-value=1.7e+02 Score=21.88 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=28.4
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeee
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYR 382 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yr 382 (411)
+.+.+++.+++...+ ... .++-..+++....+. ...|.|+|||...-
T Consensus 17 a~~~L~~~gi~~~~~-di~-------~~~~~~~el~~~~g~------~~vP~v~i~~~~iG 63 (73)
T cd03027 17 VRLFLREKGLPYVEI-NID-------IFPERKAELEERTGS------SVVPQIFFNEKLVG 63 (73)
T ss_pred HHHHHHHCCCceEEE-ECC-------CCHHHHHHHHHHhCC------CCcCEEEECCEEEe
Confidence 356788888876655 221 223345555544443 34599999997653
No 59
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=22.37 E-value=2.5e+02 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=24.1
Q ss_pred cCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEE
Q 015215 143 LQNITIPSALISKSLGDSIKKSLSGGEMVNMNLD 176 (411)
Q Consensus 143 ~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~ 176 (411)
..++.+| ...-|+.|++.+.+|+.+.+++-
T Consensus 26 k~DlklP----~~elg~~I~~~f~~gk~~~vtV~ 55 (69)
T cd04468 26 REDLKLP----EGELGKEIREKFDEGKDVLVTVL 55 (69)
T ss_pred ccCCcCC----cHHHHHHHHHHHhCCCcEEEEEE
Confidence 4578888 36889999999999988877763
No 60
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.41 E-value=52 Score=27.08 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=6.5
Q ss_pred HHHHhhcccceeEE
Q 015215 11 ILFLLCGLSFGRFV 24 (411)
Q Consensus 11 ~~~~~~~~~~~~fv 24 (411)
+||++++.+++|=.
T Consensus 15 ~lLlisSevaa~~~ 28 (95)
T PF07172_consen 15 ALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHhhhhhHHh
Confidence 33444554555433
No 61
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=21.06 E-value=1.4e+02 Score=28.05 Aligned_cols=55 Identities=27% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHHhcCCC
Q 015215 341 GDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFQ 399 (411)
Q Consensus 341 ~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aIC~~f~ 399 (411)
.|+|++..++--........+. +-++=|.++|||+.-++--+...+..+|=..-.
T Consensus 45 kD~fa~~~~t~RQr~Y~~~~~~----~~vYTPQ~vVnG~~~~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 45 KDPFASPEFTQRQRAYARRFGL----RSVYTPQVVVNGREHRVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp --TT--HHHHHHHHHHHHHTT-----S---SSEEEETTTEEEETT-HHHHHHHHHHHHH
T ss_pred CCccCChhHHHHHHHHHHHhCC----CCCcCCeEEECCeeeeeccCHHHHHHHHHHhhc
Confidence 3667666665554444444433 247889999999999888888888777755433
No 62
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=20.85 E-value=1.8e+02 Score=21.96 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=27.7
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeec
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 383 (411)
.+++++++++...++ . + .++-..+++....+ ...+|+|+|||+..-|
T Consensus 16 ~~~L~~~~i~~~~~d-i------~-~~~~~~~~~~~~~g------~~~vP~i~i~g~~igg 62 (79)
T TIGR02181 16 KALLSSKGVTFTEIR-V------D-GDPALRDEMMQRSG------RRTVPQIFIGDVHVGG 62 (79)
T ss_pred HHHHHHcCCCcEEEE-e------c-CCHHHHHHHHHHhC------CCCcCEEEECCEEEcC
Confidence 567888888765553 1 1 22223334333323 3578999999987744
No 63
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=20.62 E-value=67 Score=21.45 Aligned_cols=15 Identities=33% Similarity=0.734 Sum_probs=13.6
Q ss_pred eEEEEcCeeeeccCC
Q 015215 372 PTLVINNRQYRGKLD 386 (411)
Q Consensus 372 Ptl~IN~~~yrG~l~ 386 (411)
|-+.|||..|+|.-+
T Consensus 11 Pil~i~~~vf~G~~~ 25 (35)
T PF10419_consen 11 PILQIGNQVFEGEWE 25 (35)
T ss_pred CEEEECCEEEEEEEh
Confidence 999999999999865
Done!