Query 015215
Match_columns 411
No_of_seqs 295 out of 1241
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 1.2E-22 4E-27 186.3 19.5 126 42-177 54-185 (194)
2 3iib_A Peptidase M28; YP_92679 99.0 4.1E-09 1.4E-13 108.2 16.0 129 29-177 79-225 (444)
3 2ek8_A Aminopeptidase; metallo 98.9 9.5E-09 3.3E-13 104.6 14.1 101 56-177 91-195 (421)
4 3fed_A Glutamate carboxypeptid 98.4 3.4E-07 1.2E-11 98.9 9.3 105 55-166 124-267 (707)
5 3kas_A Transferrin receptor pr 98.4 3.4E-07 1.2E-11 97.9 9.1 102 56-166 106-230 (640)
6 3i6s_A Subtilisin-like proteas 98.0 6.1E-06 2.1E-10 88.5 7.7 94 62-177 261-356 (649)
7 1y9z_A Alkaline serine proteas 97.9 3E-05 1E-09 79.3 9.1 77 86-174 270-355 (441)
8 1xf1_A C5A peptidase, SCP; hyd 97.8 6.2E-05 2.1E-09 83.8 10.3 65 87-163 278-343 (926)
9 3gha_A Disulfide bond formatio 96.4 0.061 2.1E-06 48.6 14.1 99 284-394 87-187 (202)
10 3bci_A Disulfide bond protein 96.1 0.11 3.9E-06 45.5 13.6 102 283-396 68-175 (186)
11 3gyk_A 27KDA outer membrane pr 95.5 0.38 1.3E-05 41.4 14.6 86 298-394 83-168 (175)
12 3gmf_A Protein-disulfide isome 93.8 0.029 9.9E-07 51.1 2.8 67 323-396 127-194 (205)
13 2imf_A HCCA isomerase, 2-hydro 90.9 0.13 4.4E-06 46.0 3.1 68 321-395 125-192 (203)
14 3hz8_A Thiol:disulfide interch 90.8 0.13 4.6E-06 45.7 3.2 68 319-393 109-177 (193)
15 3fz5_A Possible 2-hydroxychrom 90.1 0.16 5.3E-06 45.6 3.0 92 298-396 107-199 (202)
16 3f4s_A Alpha-DSBA1, putative u 90.1 0.12 4.2E-06 47.6 2.3 91 298-394 103-206 (226)
17 2rem_A Disulfide oxidoreductas 89.3 0.17 5.8E-06 44.4 2.6 66 320-393 112-178 (193)
18 3vta_A Cucumisin; subtilisin-l 88.4 0.77 2.6E-05 48.6 7.3 62 87-167 279-340 (621)
19 4dvc_A Thiol:disulfide interch 88.2 0.23 7.9E-06 42.8 2.6 68 319-393 106-176 (184)
20 3gl5_A Putative DSBA oxidoredu 88.0 0.41 1.4E-05 44.3 4.3 95 298-399 115-213 (239)
21 3h93_A Thiol:disulfide interch 87.2 0.23 8E-06 43.6 2.0 89 298-393 86-178 (192)
22 2znm_A Thiol:disulfide interch 86.2 0.34 1.2E-05 42.5 2.6 61 322-389 108-170 (195)
23 3hd5_A Thiol:disulfide interch 82.9 0.81 2.8E-05 40.1 3.5 59 319-384 107-165 (195)
24 2in3_A Hypothetical protein; D 81.3 1 3.6E-05 40.0 3.7 90 298-394 110-205 (216)
25 1z6m_A Conserved hypothetical 79.9 26 0.00089 29.5 12.6 28 367-394 146-173 (175)
26 3c7m_A Thiol:disulfide interch 78.1 0.8 2.8E-05 39.8 1.8 62 326-394 125-189 (195)
27 3l9v_A Putative thiol-disulfid 78.0 1.7 5.8E-05 38.2 3.9 56 319-381 100-156 (189)
28 3feu_A Putative lipoprotein; a 77.8 1 3.4E-05 39.7 2.3 68 319-394 108-179 (185)
29 3l9s_A Thiol:disulfide interch 75.5 1.2 4E-05 39.6 2.1 56 319-381 107-162 (191)
30 1r4w_A Glutathione S-transfera 71.8 4.6 0.00016 36.4 5.2 95 298-399 113-215 (226)
31 3kzq_A Putative uncharacterize 69.5 2.6 8.8E-05 37.5 2.9 89 299-394 104-198 (208)
32 3kp8_A Vkorc1/thioredoxin doma 67.1 2.7 9.2E-05 33.4 2.2 27 368-394 64-90 (106)
33 1un2_A DSBA, thiol-disulfide i 65.2 3.7 0.00013 36.6 3.0 55 322-383 9-63 (197)
34 1fo5_A Thioredoxin; disulfide 57.0 5.8 0.0002 28.8 2.3 28 367-394 53-81 (85)
35 3rpp_A Glutathione S-transfera 54.7 17 0.00057 33.0 5.6 78 319-400 135-216 (234)
36 1nho_A Probable thioredoxin; b 53.6 6.4 0.00022 28.5 2.1 28 367-394 52-80 (85)
37 3gn3_A Putative protein-disulf 52.4 13 0.00043 32.6 4.2 63 322-394 116-181 (182)
38 1ilo_A Conserved hypothetical 41.5 8.8 0.0003 27.4 1.1 27 368-394 48-76 (77)
39 4f87_A Plycb; lysin, bacteriop 40.8 15 0.00052 26.2 2.2 21 146-166 51-71 (72)
40 4b2v_A S64; toxin, ICK; NMR {S 39.7 12 0.00042 22.7 1.4 15 250-265 1-15 (32)
41 4aor_D Trypsin inhibitor 3; hy 39.4 5.2 0.00018 25.4 -0.4 16 392-410 8-23 (37)
42 3gv1_A Disulfide interchange p 33.1 24 0.00083 29.7 2.7 34 367-400 106-140 (147)
43 3kp9_A Vkorc1/thioredoxin doma 29.5 22 0.00076 33.8 2.1 28 367-394 248-275 (291)
44 3ic4_A Glutaredoxin (GRX-1); s 23.8 1.3E+02 0.0043 22.0 5.2 62 323-394 29-90 (92)
45 3qmx_A Glutaredoxin A, glutare 23.5 92 0.0031 23.9 4.4 47 323-383 33-80 (99)
46 1fov_A Glutaredoxin 3, GRX3; a 23.0 1.7E+02 0.0057 20.5 5.6 59 323-398 18-76 (82)
47 1r7h_A NRDH-redoxin; thioredox 22.8 51 0.0017 23.0 2.6 56 323-394 18-73 (75)
48 3ipz_A Monothiol glutaredoxin- 22.3 87 0.003 24.4 4.1 48 322-383 39-86 (109)
49 2yan_A Glutaredoxin-3; oxidore 21.4 99 0.0034 23.6 4.2 48 322-383 38-85 (105)
50 1ttz_A Conserved hypothetical 20.8 67 0.0023 24.3 3.0 26 368-394 46-72 (87)
51 1t1v_A SH3BGRL3, SH3 domain-bi 20.5 1.1E+02 0.0038 22.8 4.3 50 322-383 24-73 (93)
52 3nzn_A Glutaredoxin; structura 20.4 1.1E+02 0.0038 23.2 4.3 26 369-394 76-101 (103)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=186.26 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=103.3
Q ss_pred eeeeeccCCCCCCCCceEEEEeccc--CCccCCCCCCCCCCccc-CCCCCCCeEEEEeccC-CCHHHHHHHHHhcCCcEE
Q 015215 42 YECAIGNFGVPQYGGTLIGTVVYPK--ANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGD-CYFTLKAWNAQKGGAAAI 117 (411)
Q Consensus 42 y~~~~a~FG~~~~g~~l~G~lv~~~--~~~~gC~~~~~~~~~~~-~~~~~~g~IvLV~RG~-CsF~~Kv~nAq~aGA~av 117 (411)
.....|+||...+.+.++|.|+++. ++.+||++.+++..+.. ..+..+++||||+||+ |+|.+|++|||++||+||
T Consensus 54 ~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~av 133 (194)
T 3icu_A 54 ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGA 133 (194)
T ss_dssp EEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEE
T ss_pred ecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEE
Confidence 5667899999999999999999876 47899999876431110 0012468999999999 999999999999999999
Q ss_pred EEEeCCC--CCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEEe
Q 015215 118 LVADDKT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDW 177 (411)
Q Consensus 118 II~nn~~--~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~~ 177 (411)
||||+.. +.+++|..++ ..+||++||++++|+.|+++|++|.+|+++|..
T Consensus 134 IIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~v 185 (194)
T 3icu_A 134 VIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEV 185 (194)
T ss_dssp EEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEEEEEC
Confidence 9999852 3457785321 357999999999999999999999999998877
No 2
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.02 E-value=4.1e-09 Score=108.24 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=85.9
Q ss_pred eEEEEccccccceeeeeeccCCCCCCCCceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCC-------
Q 015215 29 SLKVTSPEKIKGVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY------- 101 (411)
Q Consensus 29 ~l~V~~P~~l~~~y~~~~a~FG~~~~g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~Cs------- 101 (411)
+++++.|.. ..+......+.+....+.++|+||+.. +...|..... ..++|+||||+||.|.
T Consensus 79 ~~~~~~~~~--~~~~~~~l~~s~~tp~~~vta~lV~v~-~~~~~~~~~~--------~dvkGKIVlv~~~~~~~~~~~~y 147 (444)
T 3iib_A 79 KASILSPFP--QPLVVTALGGSIATPAQGLSATIVRFD-TLQDLQNAEA--------GSLNDKIAFIDAKTERHRDGKGY 147 (444)
T ss_dssp EEEEEESSC--EEECEEECBTCCCCCTTCEEEEEEEES-SHHHHHTSCT--------TTTTTCEEEECCCCCCCTTCHHH
T ss_pred EEEEeCCCC--ceEEEEeccCCCCCCCCCeEEEEEecC-CHHHHhhccc--------cccCccEEEEeCCCCCCcccccc
Confidence 355555432 223333333443333567999998864 2334443321 2468999999999995
Q ss_pred --HHHHH----HHHHhcCCcEEEEEeCCCCCc---e--ecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHhCCCe
Q 015215 102 --FTLKA----WNAQKGGAAAILVADDKTEPL---I--TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEM 170 (411)
Q Consensus 102 --F~~Kv----~nAq~aGA~avII~nn~~~~l---~--~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~ 170 (411)
|..|. .+|+++||+||||+++..... . +|..+ .....||++.|++++|+.|++.++.|+.
T Consensus 148 ~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~---------~~~~~IP~~~Is~~da~~L~~~l~~g~~ 218 (444)
T 3iib_A 148 GQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYE---------EGVTAIPAAAISNPDADLINAMLKRDKE 218 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCC---------TTSCCCCEEEECHHHHHHHHHHHTTTCC
T ss_pred cchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccC---------CCCCCCCeEEecHHHHHHHHHHHhCCCC
Confidence 77774 579999999999998754321 1 12111 1246899999999999999999998877
Q ss_pred EEEEEEe
Q 015215 171 VNMNLDW 177 (411)
Q Consensus 171 V~v~l~~ 177 (411)
+.+++..
T Consensus 219 ~~v~l~~ 225 (444)
T 3iib_A 219 VVISLEL 225 (444)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 7777665
No 3
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.92 E-value=9.5e-09 Score=104.62 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=72.7
Q ss_pred CceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCce-ecCCCC
Q 015215 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLI-TMDTPE 134 (411)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~-~m~~p~ 134 (411)
+.++|.|++.. .| .+.+... -+++|+||||+||+|+|..|+.+|+++||+||||+++.+.+.. +|.
T Consensus 91 g~v~a~lv~~~---~G-~~~D~~~------~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~--- 157 (421)
T 2ek8_A 91 SDVTAELVYVG---LG-TTADVAG------KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLG--- 157 (421)
T ss_dssp EEEEEEEEECT---TC-CTTTTTT------SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCS---
T ss_pred CCcceEEEECC---CC-ChhhcCC------CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccC---
Confidence 47899997742 22 2211111 1468999999999999999999999999999999998644322 121
Q ss_pred cccccccccCCcceeEEEEehHhHHHHHHHH---hCCCeEEEEEEe
Q 015215 135 EENADAEYLQNITIPSALISKSLGDSIKKSL---SGGEMVNMNLDW 177 (411)
Q Consensus 135 ~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l---~~g~~V~v~l~~ 177 (411)
+ .....||++.|+.++++.|++.+ +.| .+.+++..
T Consensus 158 ~-------~~~~~IP~~~Is~~~a~~L~~~l~~~~~g-~~~v~l~~ 195 (421)
T 2ek8_A 158 G-------SDASFVAAVGITKQEGDALAANLRAGEKI-TATVKVAG 195 (421)
T ss_dssp S-------CCTTCCEEEEECHHHHHHHHHHHHTTCCC-EEEEEEES
T ss_pred C-------CCCCCccEEEeCHHHHHHHHHHhhhhccC-Cccccccc
Confidence 1 12568999999999999999998 444 35555543
No 4
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.45 E-value=3.4e-07 Score=98.87 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCceEEEEecccCCccCCCCCCCCCCcccC--CCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCC-------
Q 015215 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKS--RPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE------- 125 (411)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~--~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~------- 125 (411)
.+.++|.|||. ..||.. +.. .+.. .-+++|+||||+||.|+|..|++||+++||+|||||++..+
T Consensus 124 ~G~v~g~lV~v---~~G~~~-Df~--~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~ 197 (707)
T 3fed_A 124 QGMPEGDLVYV---NYARTE-DFF--KLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQ 197 (707)
T ss_dssp CBCCEECEEEC---TTCCHH-HHH--HHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCC
T ss_pred CCceEEEEEEe---cCCchh-hHH--HHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccc
Confidence 35789999885 356631 110 0100 12468999999999999999999999999999999986310
Q ss_pred ----------------CceecCCCCcccccccc--------------cCCcceeEEEEehHhHHHHHHHHh
Q 015215 126 ----------------PLITMDTPEEENADAEY--------------LQNITIPSALISKSLGDSIKKSLS 166 (411)
Q Consensus 126 ----------------~l~~m~~p~~~~~~~~~--------------~~~i~IPsv~Is~~~G~~L~~~l~ 166 (411)
.+..+..++|.. ..|+ ....+||++-|++.+|+.|++.|.
T Consensus 198 ~yP~~~~~p~~~vqrGsv~~~~~~GDp~-TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~ 267 (707)
T 3fed_A 198 PYPKGWNLPGTAAQRGNVLNLNGAGDPL-TPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLG 267 (707)
T ss_dssp BTTTSSBCCTTCCCCCCCCCCTTCCSTT-CTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBC
T ss_pred cCCCCccCCCccccccceecccCCCCCC-CCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhc
Confidence 000000111100 0000 123689999999999999999875
No 5
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.45 E-value=3.4e-07 Score=97.89 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=67.7
Q ss_pred CceEEEEecccCCccCCCCCCCCCCcccCCCCCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCC-ce------
Q 015215 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-LI------ 128 (411)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~-l~------ 128 (411)
+.++|.||+. ..||.. +.. .+. -+++|+||||+||+|+|..|+.+|+++||+|||||++..+. ..
T Consensus 106 g~v~g~lV~v---g~G~~~-D~~--~l~--vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~ 177 (640)
T 3kas_A 106 ATVTGKLVHA---NFGTKK-DFE--DLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSF 177 (640)
T ss_dssp EEEEECEEEC---TTCCHH-HHH--TCS--SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCC
T ss_pred CceEEEEEEe---cCCChh-hHH--Hhh--cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccc
Confidence 4688999885 345532 111 111 14689999999999999999999999999999999976321 10
Q ss_pred ----ecCCCCcc-ccc------c-----cccCCcceeEEEEehHhHHHHHHHHh
Q 015215 129 ----TMDTPEEE-NAD------A-----EYLQNITIPSALISKSLGDSIKKSLS 166 (411)
Q Consensus 129 ----~m~~p~~~-~~~------~-----~~~~~i~IPsv~Is~~~G~~L~~~l~ 166 (411)
.+. ++|. +.+ . .......||++-|++++|+.|.+.+.
T Consensus 178 ~G~~~~~-~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 178 FGHAHLG-TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CEECCSS-SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccccccC-CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000 1110 000 0 00113579999999999999998764
No 6
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.04 E-value=6.1e-06 Score=88.47 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=71.3
Q ss_pred EecccCCccCCCCCCCCCCcccCCCCC--CCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCccccc
Q 015215 62 VVYPKANQKACKGFDEVDLSFKSRPGG--LPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENAD 139 (411)
Q Consensus 62 lv~~~~~~~gC~~~~~~~~~~~~~~~~--~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~ 139 (411)
++++. ....|.+..... ... +|+|+|++||.|.|.+|..+++++||+++|++|+. +.+ .
T Consensus 261 lv~~~-~~~~C~~~~l~~------~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~-~~~--~--------- 321 (649)
T 3i6s_A 261 VIYNK-TLSDCSSEELLS------QVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP-GVF--R--------- 321 (649)
T ss_dssp EECCT-TTTTCCCHHHHT------TSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG-GGG--G---------
T ss_pred eEecc-cccccccccccc------cccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc-ccc--c---------
Confidence 44433 456898753211 123 79999999999999999999999999999999875 211 1
Q ss_pred ccccCCcceeEEEEehHhHHHHHHHHhCCCeEEEEEEe
Q 015215 140 AEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDW 177 (411)
Q Consensus 140 ~~~~~~i~IPsv~Is~~~G~~L~~~l~~g~~V~v~l~~ 177 (411)
.....||+++|+.++|+.|++++.++....+++.+
T Consensus 322 ---~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~ 356 (649)
T 3i6s_A 322 ---SATFPNPGVVVNKKEGKQVINYVKNSVTPTATITF 356 (649)
T ss_dssp ---CCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred ---cccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEee
Confidence 11357999999999999999999987765555554
No 7
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.88 E-value=3e-05 Score=79.26 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCCCCeEEEEeccCC-----CHHHHHHHHHhcCCcEEEEEeCCCCC----ceecCCCCcccccccccCCcceeEEEEehH
Q 015215 86 PGGLPTFLLVDRGDC-----YFTLKAWNAQKGGAAAILVADDKTEP----LITMDTPEEENADAEYLQNITIPSALISKS 156 (411)
Q Consensus 86 ~~~~g~IvLV~RG~C-----sF~~Kv~nAq~aGA~avII~nn~~~~----l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~ 156 (411)
+.++++|+|++||.| .|..|+.+|+++||+++||++|...+ ...++ ......||+++|+++
T Consensus 270 ~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~----------~~~~~~~p~~~v~~~ 339 (441)
T 1y9z_A 270 GNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVD----------ANSDITVPSVSVDRA 339 (441)
T ss_dssp CCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEEC----------TTCCCCSCEEEECHH
T ss_pred CCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccc----------cccCccccEEEEeHH
Confidence 356899999999987 89999999999999999999986421 11121 123468999999999
Q ss_pred hHHHHHHHHhCCCeEEEE
Q 015215 157 LGDSIKKSLSGGEMVNMN 174 (411)
Q Consensus 157 ~G~~L~~~l~~g~~V~v~ 174 (411)
+|+.|++++ +..++++
T Consensus 340 ~g~~l~~~~--~~~~t~~ 355 (441)
T 1y9z_A 340 TGLALKAKL--GQSTTVS 355 (441)
T ss_dssp HHHHHHTTT--TSEEEEE
T ss_pred HHHHHHHHh--cCCcccc
Confidence 999999887 3445543
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.78 E-value=6.2e-05 Score=83.81 Aligned_cols=65 Identities=31% Similarity=0.459 Sum_probs=54.0
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCc-eecCCCCcccccccccCCcceeEEEEehHhHHHHHH
Q 015215 87 GGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL-ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKK 163 (411)
Q Consensus 87 ~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l-~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~ 163 (411)
.++|+|+|++||.|+|.+|+.+|+++||.++|++|+..+.. +.+ + ....||+++|++++|+.|+.
T Consensus 278 ~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~--~----------~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 278 DVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL--P----------NVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp TCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC--C----------CSTTCCEEEECHHHHHHHHH
T ss_pred hcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc--C----------ccccccEEEEeHHHHHHHHh
Confidence 46899999999999999999999999999999998864322 221 1 23579999999999998884
No 9
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=96.44 E-value=0.061 Score=48.57 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=62.1
Q ss_pred hhhhhhcccCCCCchhhHHHHHHhhhCCccc-hhhhHHHHHHHHHH-hCCChhhcccccCCccCcccchHHHHHHHHHhC
Q 015215 284 ACFFKVANESRKPWLWWDYVTDFAIRCPMKE-KKYTKECAEQVIKS-LGVDLKKVDECVGDPEADVDNQVLKTEQDAQIG 361 (411)
Q Consensus 284 lci~~~~~~~~~~~~WW~Yv~~f~~~C~~~~-~~y~~~C~~~v~~~-l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~ 361 (411)
.|+++.... ++|+|.+..-..=.... ...+.+=-.+++++ +|+|.+++++|+.++.. . ..++++...-..
T Consensus 87 ~a~~~~~~~-----~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~--~-~~v~~~~~~a~~ 158 (202)
T 3gha_A 87 EEVWKEDPD-----SFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETF--A-SQVEKDSDLNQK 158 (202)
T ss_dssp HHHHHHCGG-----GHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTT--H-HHHHHHHHHHHH
T ss_pred HHHHhhCHH-----HHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHH--H-HHHHHHHHHHHH
Confidence 466654444 79999887433211111 11223445667788 89999999999975532 2 233433332212
Q ss_pred CCCCCceEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 362 KGSRGDVTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 362 ~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
.+|.--||++|||+.+.|..+.+.+.++|
T Consensus 159 ----~gV~gtPtfvvnG~~~~G~~~~e~l~~~i 187 (202)
T 3gha_A 159 ----MNIQATPTIYVNDKVIKNFADYDEIKETI 187 (202)
T ss_dssp ----TTCCSSCEEEETTEECSCTTCHHHHHHHH
T ss_pred ----cCCCcCCEEEECCEEecCCCCHHHHHHHH
Confidence 33677899999999999988887766655
No 10
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=96.07 E-value=0.11 Score=45.51 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=62.4
Q ss_pred HhhhhhhcccCCCCchhhHHHHHHhhhCCc-cchhhhHHHHHHHHHHhCCChhh---ccccc--CCccCcccchHHHHHH
Q 015215 283 QACFFKVANESRKPWLWWDYVTDFAIRCPM-KEKKYTKECAEQVIKSLGVDLKK---VDECV--GDPEADVDNQVLKTEQ 356 (411)
Q Consensus 283 qlci~~~~~~~~~~~~WW~Yv~~f~~~C~~-~~~~y~~~C~~~v~~~l~id~~~---v~~C~--~~~~~d~~n~iL~~e~ 356 (411)
-+|+.+...+ .+|+|.+..-..=.. .....+.+--.++++++|+|.++ +.+|+ .++. ..+ .++++.
T Consensus 68 ~~~a~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~--~~~-~v~~~~ 139 (186)
T 3bci_A 68 SHAVLMYAPK-----SFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSK--SWK-AAEKDK 139 (186)
T ss_dssp HHHHHHHCGG-----GHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCH--HHH-HHHHHH
T ss_pred HHHHHHhCHH-----HHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHH--HHH-HHHHHH
Confidence 3466554333 688888865332111 11112344556788889999999 99998 5442 122 344333
Q ss_pred HHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHHhc
Q 015215 357 DAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICA 396 (411)
Q Consensus 357 ~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aIC~ 396 (411)
..-.. .+|.--||++|||+.+.|..+.+.+.++|=.
T Consensus 140 ~~a~~----~gv~GtPt~vvnG~~~~G~~~~~~l~~~i~~ 175 (186)
T 3bci_A 140 KIAKD----NHIKTTPTAFINGEKVEDPYDYESYEKLLKD 175 (186)
T ss_dssp HHHHH----TTCCSSSEEEETTEECSCTTCHHHHHHHHHC
T ss_pred HHHHH----cCCCCCCeEEECCEEcCCCCCHHHHHHHHHH
Confidence 22111 2367789999999999998888777776643
No 11
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=95.53 E-value=0.38 Score=41.39 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=57.3
Q ss_pred hhhHHHHHHhhhCCccchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEc
Q 015215 298 LWWDYVTDFAIRCPMKEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 377 (411)
.+|+|.+.+-..= ...+.+--.++++++|+|..++.+|+.++.. .. .++++...-.. .+|.-.||++||
T Consensus 83 ~~~~~~~~lf~~~----~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~--~~-~v~~~~~~a~~----~gv~gtPt~~i~ 151 (175)
T 3gyk_A 83 KYEAFHWALMGMS----GKANETGVLRIAREVGLDTEQLQRDMEAPEV--TA-HIAQSMALAQK----LGFNGTPSFVVE 151 (175)
T ss_dssp CHHHHHHHHHTCS----SCCSHHHHHHHHHHTTCCHHHHHHHTTCHHH--HH-HHHHHHHHHHH----HTCCSSSEEEET
T ss_pred HHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHHhChHH--HH-HHHHHHHHHHH----cCCccCCEEEEC
Confidence 5788877653321 2234555677899999999999999975531 22 33333222111 236778999999
Q ss_pred CeeeeccCChhHHHHHH
Q 015215 378 NRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 378 ~~~yrG~l~~~~v~~aI 394 (411)
|+.+.|..+.+.+.++|
T Consensus 152 g~~~~G~~~~~~l~~~i 168 (175)
T 3gyk_A 152 DALVPGFVEQSQLQDAV 168 (175)
T ss_dssp TEEECSCCCHHHHHHHH
T ss_pred CEEeeCCCCHHHHHHHH
Confidence 99999998887766655
No 12
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=93.79 E-value=0.029 Score=51.09 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHH-HhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHHhc
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDA-QIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICA 396 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~-q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aIC~ 396 (411)
.+++.++|+|.+++++|+.++. ....|.+..... + . .+|.--||++|||+.+.|..+.+.+.++|=.
T Consensus 127 ~~~a~~~Gld~~~~~~~l~s~~--~~~~v~~~~~~a~~-~----~GV~GtPtfvvng~~~~G~~~~e~l~~~i~~ 194 (205)
T 3gmf_A 127 YDFMAARGMDRSTLDRCLSNEA--LAKKLAAETDEAIN-Q----YNVSGTPSFMIDGILLAGTHDWASLRPQILA 194 (205)
T ss_dssp HHHHHTTTCCHHHHHHHHTCHH--HHHHHHHHHHHHHH-H----HCCCSSSEEEETTEECTTCCSHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHcCHH--HHHHHHHHHHHHHH-H----cCCccCCEEEECCEEEeCCCCHHHHHHHHHH
Confidence 4566788999999999997542 122233332222 1 1 2366779999999999999988877776633
No 13
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=90.86 E-value=0.13 Score=46.04 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHHh
Q 015215 321 CAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAIC 395 (411)
Q Consensus 321 C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aIC 395 (411)
=-.++++++|+|.+++.+|+.++.. .. .++++...-.. .+|.-.||++|||+.+.|.-..+.+.++|-
T Consensus 125 ~L~~~a~~~Gld~~~~~~~~~s~~~--~~-~v~~~~~~a~~----~Gv~G~Ptfvi~g~~~~G~~~~~~l~~~l~ 192 (203)
T 2imf_A 125 LPALVSEKLGWDRSAFEHFLSSNAA--TE-RYDEQTHAAIE----RKVFGVPTMFLGDEMWWGNDRLFMLESAMG 192 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHSHHH--HH-HHHHHHHHHHH----TTCCSSSEEEETTEEEESGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhcCHHH--HH-HHHHHHHHHHH----CCCCcCCEEEECCEEEECCCCHHHHHHHHh
Confidence 3456778899999999999875521 22 33333322112 236778999999999999876666555553
No 14
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=90.83 E-value=0.13 Score=45.74 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=45.1
Q ss_pred HHHHHHHHHHh-CCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHH
Q 015215 319 KECAEQVIKSL-GVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKA 393 (411)
Q Consensus 319 ~~C~~~v~~~l-~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~a 393 (411)
.+=-.+++.++ |+|.+++++|+.++. ....++++...-.. .+|.-.||++|||+.+.|..+.+..+++
T Consensus 109 ~~~l~~~a~~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~gtPt~vvng~~~~~~~~~e~l~~~ 177 (193)
T 3hz8_A 109 PEVLKKWLGEQTAFDGKKVLAAYESPE---SQARADKMQELTET----FQIDGVPTVIVGGKYKVEFADWESGMNT 177 (193)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEECCSSHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHcCHH---HHHHHHHHHHHHHH----hCCCcCCEEEECCEEEecCCCHHHHHHH
Confidence 44456778888 999999999996542 22233433332111 3367789999999999987655554443
No 15
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=90.09 E-value=0.16 Score=45.63 Aligned_cols=92 Identities=8% Similarity=0.095 Sum_probs=56.6
Q ss_pred hhhHHHHHHhhhCCccc-hhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEE
Q 015215 298 LWWDYVTDFAIRCPMKE-KKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~-~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~I 376 (411)
+.|+|....-..-.... +..+.+=-.+++.++|+|.+++.+|+.++.. .. .++++...-.. .+|.-.||++|
T Consensus 107 ~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~--~~-~v~~~~~~a~~----~Gv~GvPtfvv 179 (202)
T 3fz5_A 107 AATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPAL--KE-TVRKIGEDAVA----RGIFGSPFFLV 179 (202)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHH--HH-HHHHHHHHHHH----TTCCSSSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHH--HH-HHHHHHHHHHH----CCCCcCCEEEE
Confidence 46667666543211111 1122445566778899999999999865421 22 33333322112 23777899999
Q ss_pred cCeeeeccCChhHHHHHHhc
Q 015215 377 NNRQYRGKLDKGAVLKAICA 396 (411)
Q Consensus 377 N~~~yrG~l~~~~v~~aIC~ 396 (411)
||+.|.|.-..+.+.++|-.
T Consensus 180 ~g~~~~G~~~~~~l~~~l~~ 199 (202)
T 3fz5_A 180 DDEPFWGWDRMEMMAEWIRT 199 (202)
T ss_dssp TTEEEESGGGHHHHHHHHHT
T ss_pred CCEEEecCCCHHHHHHHHhc
Confidence 99999998777777777643
No 16
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=90.08 E-value=0.12 Score=47.55 Aligned_cols=91 Identities=9% Similarity=0.176 Sum_probs=53.5
Q ss_pred hhhHHHHHHhhhC-Cc-cchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEE
Q 015215 298 LWWDYVTDFAIRC-PM-KEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLV 375 (411)
Q Consensus 298 ~WW~Yv~~f~~~C-~~-~~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~ 375 (411)
++|+|.+..-..= .. .....+.+=-.++++++|+|.+++++|+.++.. .. .++++...-.. ..+|.--||++
T Consensus 103 ~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~--~~-~v~~~~~~a~~---~~GV~GtPtfv 176 (226)
T 3f4s_A 103 DYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKI--MD-KIVNDKSLAIN---KLGITAVPIFF 176 (226)
T ss_dssp HHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHH--HH-HHHHHHHHHHH---HHCCCSSCEEE
T ss_pred HHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHH--HH-HHHHHHHHHHH---HcCCCcCCEEE
Confidence 5788777643221 00 000112334456788999999999999965421 22 33333322111 01266779999
Q ss_pred E---cCeeeeccCC--------hhHHHHHH
Q 015215 376 I---NNRQYRGKLD--------KGAVLKAI 394 (411)
Q Consensus 376 I---N~~~yrG~l~--------~~~v~~aI 394 (411)
| ||+.+.|.++ .+...++|
T Consensus 177 v~~~nG~~~~Ga~~~~~~G~~~~e~l~~~I 206 (226)
T 3f4s_A 177 IKLNDDKSYIEHNKVKHGGYKELKYFTNVI 206 (226)
T ss_dssp EEECCTTCCCCGGGGEEESCCCHHHHHHHH
T ss_pred EEcCCCEEeeCCCCcccccccCHHHHHHHH
Confidence 9 9999999887 66655554
No 17
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=89.32 E-value=0.17 Score=44.36 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeee-eccCChhHHHHH
Q 015215 320 ECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY-RGKLDKGAVLKA 393 (411)
Q Consensus 320 ~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~y-rG~l~~~~v~~a 393 (411)
+=-.++++++|+|..++.+|+.++.. ...++++...-.. .+|.-.||++|||+.+ .|. +.+.+.++
T Consensus 112 ~~l~~~a~~~Gld~~~~~~~~~~~~~---~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g~-~~~~l~~~ 178 (193)
T 2rem_A 112 DELAVFYAGYGVQPDRFVATFNGPEV---EKRFQAARAYALK----VRPVGTPTIVVNGRYMVTGH-DFEDTLRI 178 (193)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSHHH---HHHHHHHHHHHHH----HCCSSSSEEEETTTEEECCS-SHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHH---HHHHHHHHHHHHH----hCCCCCCeEEECCEEEecCC-CHHHHHHH
Confidence 34556788899999999999865421 2234443322111 2367789999999977 776 65554443
No 18
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=88.41 E-value=0.77 Score=48.58 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=49.9
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCcceeEEEEehHhHHHHHHHHh
Q 015215 87 GGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (411)
Q Consensus 87 ~~~g~IvLV~RG~CsF~~Kv~nAq~aGA~avII~nn~~~~l~~m~~p~~~~~~~~~~~~i~IPsv~Is~~~G~~L~~~l~ 166 (411)
...++|+|.+|+ |..|..+++.+||.++|++++..+. .....+|+++|+..+|..|+..+.
T Consensus 279 ~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 279 LLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp GTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred cccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------------ccccccceEEECHHHHHHHHHHHh
Confidence 357999998764 6689999999999999999875321 113578999999999999998876
Q ss_pred C
Q 015215 167 G 167 (411)
Q Consensus 167 ~ 167 (411)
.
T Consensus 340 ~ 340 (621)
T 3vta_A 340 S 340 (621)
T ss_dssp H
T ss_pred c
Confidence 5
No 19
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=88.23 E-value=0.23 Score=42.81 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeee---eccCChhHHHHH
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY---RGKLDKGAVLKA 393 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~y---rG~l~~~~v~~a 393 (411)
..=-.++++.+|+|.+++++|+.++.. ...++++...-. +.+|.--||++|||+-. +|-.+.+..++.
T Consensus 106 ~~~l~~~a~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~----~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~ 176 (184)
T 4dvc_A 106 EQELRQIFLDEGIDAAKFDAAYNGFAV---DSMVHRFDKQFQ----DSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDL 176 (184)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSHHH---HHHHHHHHHHHH----HHTCCSSSEEEETTTEEECGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHHH---HHHHHHHHHHHH----HcCCCcCCEEEECCEEeeCCcCCCCHHHHHHH
Confidence 444567888999999999999965532 223333322111 12366679999999732 233344554443
No 20
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=88.01 E-value=0.41 Score=44.26 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=56.8
Q ss_pred hhhHHHHHHhhhCCccc-hhhh-HHHHHHHHHHhCCChhhcccccCC-ccCcccchHHHHHHHHHhCCCCCCceEEeeEE
Q 015215 298 LWWDYVTDFAIRCPMKE-KKYT-KECAEQVIKSLGVDLKKVDECVGD-PEADVDNQVLKTEQDAQIGKGSRGDVTILPTL 374 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~-~~y~-~~C~~~v~~~l~id~~~v~~C~~~-~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl 374 (411)
..|.|....-..-.... +..+ .+=-..++.++|+|.+++.+|+.+ +. ....++++...-.. .+|.-.||+
T Consensus 115 ~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~s~~~---~~~~v~~~~~~a~~----~Gv~GvPtf 187 (239)
T 3gl5_A 115 RHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAA---YADEVRADEREAAQ----LGATGVPFF 187 (239)
T ss_dssp CHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHHCTTT---THHHHHHHHHHHHH----TTCCSSSEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHcCcHh---HHHHHHHHHHHHHH----CCCCeeCeE
Confidence 46666665433211111 1122 344566788899999999999976 42 22233433332112 237788999
Q ss_pred EEcCe-eeeccCChhHHHHHHhcCCC
Q 015215 375 VINNR-QYRGKLDKGAVLKAICAGFQ 399 (411)
Q Consensus 375 ~IN~~-~yrG~l~~~~v~~aIC~~f~ 399 (411)
+|||+ .+.|.-..+...++|=....
T Consensus 188 vv~g~~~v~Ga~~~e~~~~~i~~~~~ 213 (239)
T 3gl5_A 188 VLDRAYGVSGAQPAEVFTQALTQAWG 213 (239)
T ss_dssp EETTTEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCcEeecCCCCHHHHHHHHHHHHh
Confidence 99997 68998888766555544433
No 21
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=87.16 E-value=0.23 Score=43.62 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=52.3
Q ss_pred hhhHHHHHHhhhCCc-cchhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEE
Q 015215 298 LWWDYVTDFAIRCPM-KEKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~-~~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~I 376 (411)
.+|+|.+..-..-.. ..+..+.+--.+++.++|+|.+++.+|+.++. ....++++...-.. .+|.-.||++|
T Consensus 86 ~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~~v 158 (192)
T 3h93_A 86 VEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFA---IKGQMEKAKKLAMA----YQVTGVPTMVV 158 (192)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHH---HHHHHHHHHHHHHH----HTCCSSSEEEE
T ss_pred CHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHH---HHHHHHHHHHHHHH----hCCCCCCeEEE
Confidence 366666654321100 11112345567788899999999999996552 12233333332111 23677899999
Q ss_pred cCeeee---ccCChhHHHHH
Q 015215 377 NNRQYR---GKLDKGAVLKA 393 (411)
Q Consensus 377 N~~~yr---G~l~~~~v~~a 393 (411)
||+.+- |-.+.+...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~ 178 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKL 178 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHH
Confidence 999875 76666554443
No 22
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=86.19 E-value=0.34 Score=42.50 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=40.0
Q ss_pred HHHHHHHh-CCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCee-eeccCChhH
Q 015215 322 AEQVIKSL-GVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQ-YRGKLDKGA 389 (411)
Q Consensus 322 ~~~v~~~l-~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~-yrG~l~~~~ 389 (411)
-.++++++ |+|..++..|+.++. ....++++...-.. .+|.-.||++|||+. ..|..+.+.
T Consensus 108 l~~~a~~~~Gld~~~~~~~~~~~~---~~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g~~~~~~ 170 (195)
T 2znm_A 108 AGKWALSQKGFDGKKLMRAYDSPE---AAAAALKMQKLTEQ----YRIDSTPTVIVGGKYRVIFNNGFDG 170 (195)
T ss_dssp HHHHHHTCSSSCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEETTTEEECCCSHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhcCHH---HHHHHHHHHHHHHH----cCCCCCCeEEECCEEEEcCCCCHHH
Confidence 45677788 999999999986542 12344443332111 236778999999985 777655443
No 23
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=82.86 E-value=0.81 Score=40.15 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeecc
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGK 384 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~ 384 (411)
.+=-.++++++|+|.+++++|+.++.. ...++++...-.. .+|.-.||++|||+.+.|-
T Consensus 107 ~~~l~~~a~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~~----~gv~gtPt~ving~~~~~g 165 (195)
T 3hd5_A 107 KKAMGEWAASQGVDRAKFDSVFDSFSV---QTQVQRASQLAEA----AHIDGTPAFAVGGRYMTSP 165 (195)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCHHH---HHHHHHHHHHHHH----TTCCSSSEEEETTTEEECT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHcCHHH---HHHHHHHHHHHHH----hCCCcCceEEECCEEEeCc
Confidence 445567888999999999999965432 2234433332212 3367789999999988763
No 24
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=81.33 E-value=1 Score=39.97 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=52.2
Q ss_pred hhhHHHHHHhhhCCccchhh-hHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEE
Q 015215 298 LWWDYVTDFAIRCPMKEKKY-TKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVI 376 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y-~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~I 376 (411)
+.|+|.+..-..-....... +.+=-.++++++|+|.+++.+|+.++.. . ..++++...-.. .+|.-.||++|
T Consensus 110 ~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~--~-~~v~~~~~~a~~----~gv~g~Pt~~i 182 (216)
T 2in3_A 110 KVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEA--K-QRTLAGFQRVAQ----WGISGFPALVV 182 (216)
T ss_dssp GHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHH--H-HHHHHHHHHHHH----TTCCSSSEEEE
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHH--H-HHHHHHHHHHHH----cCCcccceEEE
Confidence 46777765433111010111 1233456778899999999999865421 1 223333222111 23778899998
Q ss_pred --cCee---eeccCChhHHHHHH
Q 015215 377 --NNRQ---YRGKLDKGAVLKAI 394 (411)
Q Consensus 377 --N~~~---yrG~l~~~~v~~aI 394 (411)
||+. +.|-...+.+.++|
T Consensus 183 ~~~G~~~~~~~G~~~~~~l~~~l 205 (216)
T 2in3_A 183 ESGTDRYLITTGYRPIEALRQLL 205 (216)
T ss_dssp EETTEEEEEESSCCCHHHHHHHH
T ss_pred EECCEEEEeccCCCCHHHHHHHH
Confidence 9985 78887776665554
No 25
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=79.87 E-value=26 Score=29.46 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 367 DVTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 367 ~v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
+|.--||++|||+.+.|..+.+.+.++|
T Consensus 146 gv~gtPt~vvng~~~~G~~~~~~l~~~i 173 (175)
T 1z6m_A 146 HIQFVPTIIIGEYIFDESVTEEELRGYI 173 (175)
T ss_dssp TCCSSCEEEETTEEECTTCCHHHHHHHH
T ss_pred CCCCcCeEEECCEEccCCCCHHHHHHHh
Confidence 3667799999999999988877766654
No 26
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=78.13 E-value=0.8 Score=39.83 Aligned_cols=62 Identities=13% Similarity=0.258 Sum_probs=37.8
Q ss_pred HHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeee-e--ccCChhHHHHHH
Q 015215 326 IKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY-R--GKLDKGAVLKAI 394 (411)
Q Consensus 326 ~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~y-r--G~l~~~~v~~aI 394 (411)
++++|+|.+++++|+.++.. ...++++...- .+.+|.-.||++|||+.. . |-.+.+...++|
T Consensus 125 a~~~Gld~~~~~~~~~~~~~---~~~v~~~~~~a----~~~gv~gtPt~~ing~~~~~~~g~~~~~~l~~~i 189 (195)
T 3c7m_A 125 LDAAGMSQADFEAALKEPAV---QETLEKWKASY----DVAKIQGVPAYVVNGKYLIYTKSIKSIDAMADLI 189 (195)
T ss_dssp HHHHTCCHHHHHHHHTSHHH---HHHHHHGGGHH----HHHHHHCSSEEEETTTEEECGGGCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHcChHH---HHHHHHHHHHH----HHcCCCccCEEEECCEEEeccCCCCCHHHHHHHH
Confidence 88999999999999865421 12233222111 112366779999999854 3 555665554443
No 27
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=78.05 E-value=1.7 Score=38.23 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHHHHHHh-CCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeee
Q 015215 319 KECAEQVIKSL-GVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY 381 (411)
Q Consensus 319 ~~C~~~v~~~l-~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~y 381 (411)
.+=-.+++.++ |+|.+++++|+.++.. ...++++...-.. .+|.--||++|||+..
T Consensus 100 ~~~l~~~a~~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~~----~gv~GtPt~~vng~~~ 156 (189)
T 3l9v_A 100 PDDVRRVFMSATGISRGEYDRSIKSPAV---NDMVALQERLFKE----YGVRGTPSVYVRGRYH 156 (189)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTSHHH---HHHHHHHHHHHHH----TTCCSSSEEEETTTEE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHhhHHH---HHHHHHHHHHHHH----hCCCccCEEEECCEEE
Confidence 44567788888 9999999999965532 2234444332212 2367789999999743
No 28
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=77.80 E-value=1 Score=39.70 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCC-ChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCee-e--eccCChhHHHHHH
Q 015215 319 KECAEQVIKSLGV-DLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQ-Y--RGKLDKGAVLKAI 394 (411)
Q Consensus 319 ~~C~~~v~~~l~i-d~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~-y--rG~l~~~~v~~aI 394 (411)
.+=-.+++.++|+ |.+++++++.+ . ... .++++...-.. .+|.-.||++|||+. . +|-.+.+...++|
T Consensus 108 ~~~L~~~a~~~Gl~d~~~~~~~~~~-~--~~~-~v~~~~~~a~~----~gv~GtPtfvvng~~~v~~~Ga~~~e~~~~~i 179 (185)
T 3feu_A 108 QEAYSKAFTSRGLVSPYDFNEEQRD-T--LIK-KVDNAKMLSEK----SGISSVPTFVVNGKYNVLIGGHDDPKQIADTI 179 (185)
T ss_dssp HHHHHHHHHTTTCCCGGGCCHHHHH-H--HHH-HHHHHHHHHHH----HTCCSSSEEEETTTEEECGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH-H--HHH-HHHHHHHHHHH----cCCCccCEEEECCEEEEecCCCCCHHHHHHHH
Confidence 4445678888998 99999999753 2 122 33333322111 236778999999984 2 7877776655544
No 29
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=75.53 E-value=1.2 Score=39.59 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeee
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQY 381 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~y 381 (411)
.+=-.++++++|+|.+++++|+.++.. ...++++...-.. .+|.--||++|||+..
T Consensus 107 ~~~L~~~a~~~Gld~~~~~~~~~s~~~---~~~v~~~~~~a~~----~gv~gtPtfvvnG~~~ 162 (191)
T 3l9s_A 107 AADIRKVFVDAGVKGEDYDAAWNSFVV---KSLVAQQEKAAAD----LQLQGVPAMFVNGKYQ 162 (191)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSHHH---HHHHHHHHHHHHH----TTCCSSSEEEETTTEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhCHHH---HHHHHHHHHHHHH----hCCcccCEEEECCEEE
Confidence 344667888999999999999965432 2344444332212 3367789999999854
No 30
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=71.75 E-value=4.6 Score=36.36 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=56.0
Q ss_pred hhhHHHHHHhhhCCccchhh-hHHHHHHHHHHhCCC---hhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeE
Q 015215 298 LWWDYVTDFAIRCPMKEKKY-TKECAEQVIKSLGVD---LKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPT 373 (411)
Q Consensus 298 ~WW~Yv~~f~~~C~~~~~~y-~~~C~~~v~~~l~id---~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Pt 373 (411)
.+|+|.+..-..-....... +.+=-.+++.++|+| .+++.+|+.++. ....++++...-.. .+|.-.||
T Consensus 113 ~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~G~Pt 185 (226)
T 1r4w_A 113 MLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTEL---VKSKLRETTGAACK----YGAFGLPT 185 (226)
T ss_dssp GHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHH---HHHHHHHHHHHHHH----TTCCSSCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHH---HHHHHHHHHHHHHH----CCCCCCCE
Confidence 45777765432110010111 134456778889995 557778875442 12233333322112 23677899
Q ss_pred EEEc----CeeeeccCChhHHHHHHhcCCC
Q 015215 374 LVIN----NRQYRGKLDKGAVLKAICAGFQ 399 (411)
Q Consensus 374 l~IN----~~~yrG~l~~~~v~~aIC~~f~ 399 (411)
++|| +..+.|.-..+.+.++|=....
T Consensus 186 fvv~~~g~~~~~~G~~~~~~l~~~l~~~~~ 215 (226)
T 1r4w_A 186 TVAHVDGKTYMLFGSDRMELLAYLLGEKWM 215 (226)
T ss_dssp EEEEETTEEEEEESTTCHHHHHHHHTCCCC
T ss_pred EEEeCCCCcCceeCCCcHHHHHHHhcCccc
Confidence 9999 8999998777777788866555
No 31
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=69.48 E-value=2.6 Score=37.45 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=48.8
Q ss_pred hhHHHHHHhhhCCcc-chhhhHHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEc
Q 015215 299 WWDYVTDFAIRCPMK-EKKYTKECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN 377 (411)
Q Consensus 299 WW~Yv~~f~~~C~~~-~~~y~~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN 377 (411)
.|.|....-..-... .+..+.+=-.+++.++|+|.+++.+|+.++. ....++++...-.. .+|.-.||++||
T Consensus 104 ~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~~a~~----~gv~g~Pt~~v~ 176 (208)
T 3kzq_A 104 YEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTL---LEGVFQDQLSLAKS----LGVNSYPSLVLQ 176 (208)
T ss_dssp HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHH---HHHHHHHHHHHHHH----TTCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChH---HHHHHHHHHHHHHH----cCCCcccEEEEE
Confidence 466766654321111 1122245566788899999999999996542 12233333332112 236778999997
Q ss_pred Ce-ee----eccCChhHHHHHH
Q 015215 378 NR-QY----RGKLDKGAVLKAI 394 (411)
Q Consensus 378 ~~-~y----rG~l~~~~v~~aI 394 (411)
+. +| .|--+.+.++++|
T Consensus 177 ~~~~~~~~~~g~~~~e~~~~~i 198 (208)
T 3kzq_A 177 INDAYFPIEVDYLSTEPTLKLI 198 (208)
T ss_dssp ETTEEEEECCCSSCSHHHHHHH
T ss_pred ECCEEEEeeCCCCCHHHHHHHH
Confidence 42 23 3444445444443
No 32
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=67.05 E-value=2.7 Score=33.43 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=24.0
Q ss_pred eEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 368 VTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
|.-+||++|||+.|.|..+.+.+.+.+
T Consensus 64 V~~~PT~~i~G~~~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 64 ITSYPTWIINGRTYTGVRSLEALAVAS 90 (106)
T ss_dssp CCSSSEEEETTEEEESCCCHHHHHHHH
T ss_pred CeEeCEEEECCEEecCCCCHHHHHHHh
Confidence 678899999999999999998887765
No 33
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=65.16 E-value=3.7 Score=36.55 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeec
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 383 (411)
-.+++.++|+|.+++++|+.++. ....++++...--.. +|.-.|+++|||+.+..
T Consensus 9 L~~~a~~~Gld~~~~~~~l~s~~---~~~~v~~~~~~a~~~----gi~gvP~fvingk~~~~ 63 (197)
T 1un2_A 9 IRDVFINAGIKGEEYDAAWNSFV---VKSLVAQQEKAAADV----QLRGVPAMFVNGKYQLN 63 (197)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSHH---HHHHHHHHHHHHHHT----TCCSSSEEEETTTEEEC
T ss_pred HHHHHHHcCCCHHHHHHHHhCHH---HHHHHHHHHHHHHHc----CCCcCCEEEEcceEecC
Confidence 35678889999999999986542 223444433221122 24558999999986653
No 34
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=56.97 E-value=5.8 Score=28.81 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=22.1
Q ss_pred ceEEeeEEEEcCee-eeccCChhHHHHHH
Q 015215 367 DVTILPTLVINNRQ-YRGKLDKGAVLKAI 394 (411)
Q Consensus 367 ~v~~~Ptl~IN~~~-yrG~l~~~~v~~aI 394 (411)
++..+||++|||+. +.|..+.+.+.+.|
T Consensus 53 ~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l 81 (85)
T 1fo5_A 53 GIMAVPTIVINGDVEFIGAPTKEALVEAI 81 (85)
T ss_dssp TTCCSSEEEETTEEECCSSSSSHHHHHHH
T ss_pred CCcccCEEEECCEEeeecCCCHHHHHHHH
Confidence 46778999999986 88988877776654
No 35
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=54.67 E-value=17 Score=33.01 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEc--C--eeeeccCChhHHHHHH
Q 015215 319 KECAEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVIN--N--RQYRGKLDKGAVLKAI 394 (411)
Q Consensus 319 ~~C~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN--~--~~yrG~l~~~~v~~aI 394 (411)
.+=-..++.++|+|.+++++.......+.....|+++...-... +|.-.|+++|| | ..|.|.-.-+.+..+|
T Consensus 135 ~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~~~a~~~----Gv~GvPtfvv~~~g~~~~f~G~drl~~l~~~L 210 (234)
T 3rpp_A 135 PQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRY----GAFGLPITVAHVDGQTHMLFGSDRMELLAHLL 210 (234)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHT----TCSSSCEEEEEETTEEEEEESSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHHHHHHHc----CCCCCCEEEEeCCCCcCceeCccCHHHHHHHh
Confidence 45567788899999965554442111111223333333322122 36788999996 6 6899986667777777
Q ss_pred hcCCCC
Q 015215 395 CAGFQE 400 (411)
Q Consensus 395 C~~f~~ 400 (411)
=..+..
T Consensus 211 ~~~~~~ 216 (234)
T 3rpp_A 211 GEKWMG 216 (234)
T ss_dssp TCCCCC
T ss_pred ccccCC
Confidence 555553
No 36
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=53.62 E-value=6.4 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=21.9
Q ss_pred ceEEeeEEEEcCee-eeccCChhHHHHHH
Q 015215 367 DVTILPTLVINNRQ-YRGKLDKGAVLKAI 394 (411)
Q Consensus 367 ~v~~~Ptl~IN~~~-yrG~l~~~~v~~aI 394 (411)
+|.-+||++|||+. +.|..+.+.+.+.|
T Consensus 52 ~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l 80 (85)
T 1nho_A 52 GLMAVPAIAINGVVRFVGAPSREELFEAI 80 (85)
T ss_dssp CSSCSSEEEETTTEEEECSSCCHHHHHHH
T ss_pred CceeeCEEEECCEEEEccCCCHHHHHHHH
Confidence 36678999999986 88988877766554
No 37
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=52.41 E-value=13 Score=32.56 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeee---ccCChhHHHHHH
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYR---GKLDKGAVLKAI 394 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yr---G~l~~~~v~~aI 394 (411)
-..+.+.+|+|.+++ +.++. ...-++++.+.-.. .+|.--||++|||+.+. |..+.+.-.+.|
T Consensus 116 l~~~a~~~Gld~~~~---l~~~~---~~~~v~~~~~~a~~----~GV~gtPtf~ing~~~~~~s~~~~~e~w~~~l 181 (182)
T 3gn3_A 116 IARIERYSGLALAEA---FANPE---LEHAVKWHTKYARQ----NGIHVSPTFMINGLVQPGMSSGDPVSKWVSDI 181 (182)
T ss_dssp HHHHHHHHTCCCHHH---HHCGG---GHHHHHHHHHHHHH----HTCCSSSEEEETTEECTTCCTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHH---hcChH---HHHHHHHHHHHHHH----CCCCccCEEEECCEEccCCCCCCCHHHHHHHh
Confidence 456778899998887 43332 22233333221111 23667799999999985 455655554443
No 38
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=41.49 E-value=8.8 Score=27.35 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.0
Q ss_pred eEEeeEEEEcCee-eeccC-ChhHHHHHH
Q 015215 368 VTILPTLVINNRQ-YRGKL-DKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~IN~~~-yrG~l-~~~~v~~aI 394 (411)
|.-.||++|||+. ++|.. +.+.+.+.|
T Consensus 48 v~~~Pt~~~~G~~~~~G~~~~~~~l~~~l 76 (77)
T 1ilo_A 48 LTALPGLAVDGELKIMGRVASKEEIKKIL 76 (77)
T ss_dssp CSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred CCcCCEEEECCEEEEcCCCCCHHHHHHHh
Confidence 5668999999986 78887 777776654
No 39
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=40.83 E-value=15 Score=26.20 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=18.8
Q ss_pred cceeEEEEehHhHHHHHHHHh
Q 015215 146 ITIPSALISKSLGDSIKKSLS 166 (411)
Q Consensus 146 i~IPsv~Is~~~G~~L~~~l~ 166 (411)
--||++-|+++|-++++++++
T Consensus 51 qiipsinisksdveairkamk 71 (72)
T 4f87_A 51 QIIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TTSCEEECCGGGHHHHHHHHC
T ss_pred HhCccccccHhHHHHHHHHhc
Confidence 468999999999999999875
No 40
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=39.75 E-value=12 Score=22.69 Aligned_cols=15 Identities=53% Similarity=1.504 Sum_probs=11.3
Q ss_pred cccccCCccccCCCCC
Q 015215 250 SQCINHGRYCAPDPEQ 265 (411)
Q Consensus 250 ~~Ci~~Gryc~~dP~~ 265 (411)
+.|+-+|.+| |||+-
T Consensus 1 secvenggfc-pdpek 15 (32)
T 4b2v_A 1 SECVENGGFC-PDPEK 15 (32)
T ss_dssp CCCCCTTCBC-CCTTT
T ss_pred CchhhcCCcC-CChHH
Confidence 3588899998 67753
No 41
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=39.41 E-value=5.2 Score=25.42 Aligned_cols=16 Identities=50% Similarity=0.980 Sum_probs=13.2
Q ss_pred HHHhcCCCCCCCCCCccCC
Q 015215 392 KAICAGFQETTEPAICLSE 410 (411)
Q Consensus 392 ~aIC~~f~~~~~P~~C~~~ 410 (411)
.+||.+|. +|+.|-|+
T Consensus 8 ~~ic~~f~---~p~~ccsg 23 (37)
T 4aor_D 8 GAICSGFG---PPEQCCSG 23 (37)
T ss_dssp TCEECTTS---CGGGBTTS
T ss_pred CCccCCCC---Cccccccc
Confidence 46999998 88888775
No 42
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=33.14 E-value=24 Score=29.68 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=27.2
Q ss_pred ceEEeeEEEE-cCeeeeccCChhHHHHHHhcCCCC
Q 015215 367 DVTILPTLVI-NNRQYRGKLDKGAVLKAICAGFQE 400 (411)
Q Consensus 367 ~v~~~Ptl~I-N~~~yrG~l~~~~v~~aIC~~f~~ 400 (411)
+|.-.||++| ||+.+.|-.+.+.+.++|=..-++
T Consensus 106 gI~gtPt~vi~nG~~i~G~~~~~~l~~~i~~~~~~ 140 (147)
T 3gv1_A 106 GFNGTPTLVFPNGRTQSGYSPMPQLEEIIRKNQQE 140 (147)
T ss_dssp TCCSSCEEECTTSCEEESCCCTTHHHHHHHHTSCC
T ss_pred CCCccCEEEEECCEEeeCCCCHHHHHHHHHHHHHh
Confidence 3667799999 999999999988888877555444
No 43
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=29.50 E-value=22 Score=33.76 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=24.3
Q ss_pred ceEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 367 DVTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 367 ~v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
+|.-+||+++||+.|.|..+.+++.+.+
T Consensus 248 gI~~vPT~~i~G~~~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 248 GITSYPTWIINGRTYTGVRSLEALAVAS 275 (291)
T ss_dssp TCCSTTEEEETTEEEESCCCHHHHHHHT
T ss_pred CCcccCeEEECCEEecCCCCHHHHHHHH
Confidence 3677899999999999999999887764
No 44
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=23.78 E-value=1.3e+02 Score=22.00 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
..++++++++...++--..+ ...++-+..++....+. .-.|+|+|||...-| .+.+.+.++|
T Consensus 29 ~~~L~~~gi~~~~~~v~~~~---~~~~~~~~~~l~~~~g~------~~vP~l~~~g~~i~G-~~~~~l~~~l 90 (92)
T 3ic4_A 29 LEFLKREGVDFEVIWIDKLE---GEERKKVIEKVHSISGS------YSVPVVVKGDKHVLG-YNEEKLKELI 90 (92)
T ss_dssp HHHHHHHTCCCEEEEGGGCC---HHHHHHHHHHHHHHHSS------SCSCEEEETTEEEES-CCHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEeeeCC---ccchHHHHHHHHHhcCC------CCcCEEEECCEEEeC-CCHHHHHHHh
Confidence 46778888775544322111 11222223444444443 467999999987755 5887776665
No 45
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=23.49 E-value=92 Score=23.90 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=28.9
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHh-CCCCCCceEEeeEEEEcCeeeec
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQI-GKGSRGDVTILPTLVINNRQYRG 383 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~-~~~~~~~v~~~Ptl~IN~~~yrG 383 (411)
.+++++++++...++ ++ .++-+.+++.... + ..-+|+|+|||+..-|
T Consensus 33 k~~L~~~~i~y~~id-------I~-~~~~~~~~l~~~~~g------~~~vP~ifi~g~~igG 80 (99)
T 3qmx_A 33 LALLKRKGVEFQEYC-------ID-GDNEAREAMAARANG------KRSLPQIFIDDQHIGG 80 (99)
T ss_dssp HHHHHHHTCCCEEEE-------CT-TCHHHHHHHHHHTTT------CCCSCEEEETTEEEES
T ss_pred HHHHHHCCCCCEEEE-------cC-CCHHHHHHHHHHhCC------CCCCCEEEECCEEEeC
Confidence 567888887755443 12 2333445544443 3 3568999999987754
No 46
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=23.00 E-value=1.7e+02 Score=20.53 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=34.5
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHHhcCC
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGF 398 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aIC~~f 398 (411)
..++++++++...++- + .++-+.+++....+ +.-+|++++||....| ..++.+.+-+|-
T Consensus 18 ~~~l~~~~i~~~~~~i-------~-~~~~~~~~~~~~~~------~~~vP~l~~~g~~i~g---~~~i~~~~~~g~ 76 (82)
T 1fov_A 18 KALLSSKGVSFQELPI-------D-GNAAKREEMIKRSG------RTTVPQIFIDAQHIGG---YDDLYALDARGG 76 (82)
T ss_dssp HHHHHHHTCCCEEEEC-------T-TCSHHHHHHHHHHS------SCCSCEEEETTEEEES---HHHHHHHHHTTC
T ss_pred HHHHHHCCCCcEEEEC-------C-CCHHHHHHHHHHhC------CCCcCEEEECCEEEeC---HHHHHHHHHCCC
Confidence 4567777776544421 1 12334445444443 3578999999988765 355666665553
No 47
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=22.84 E-value=51 Score=22.95 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 323 EQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 323 ~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
..++++++++...++ .+ .++-+.++++ +.+ +...|++++||....| .+.+.+.+.|
T Consensus 18 ~~~l~~~~i~~~~~d-------i~-~~~~~~~~~~-~~~------~~~vP~l~~~g~~~~g-~~~~~l~~~l 73 (75)
T 1r7h_A 18 KKALDRAGLAYNTVD-------IS-LDDEARDYVM-ALG------YVQAPVVEVDGEHWSG-FRPERIKQLQ 73 (75)
T ss_dssp HHHHHHTTCCCEEEE-------TT-TCHHHHHHHH-HTT------CBCCCEEEETTEEEES-CCHHHHHHHH
T ss_pred HHHHHHcCCCcEEEE-------CC-CCHHHHHHHH-HcC------CCccCEEEECCeEEcC-CCHHHHHHHH
Confidence 456777777655442 11 2233333332 222 4568999999987655 5776665544
No 48
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.26 E-value=87 Score=24.44 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeec
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 383 (411)
+.+++.+++++...++= + .++-+.+++....+. .-+|.|+|||+..-|
T Consensus 39 ak~~L~~~gi~~~~~dI-------~-~~~~~~~~l~~~~g~------~tvP~ifi~g~~iGG 86 (109)
T 3ipz_A 39 VVQILKNLNVPFEDVNI-------L-ENEMLRQGLKEYSNW------PTFPQLYIGGEFFGG 86 (109)
T ss_dssp HHHHHHHTTCCCEEEEG-------G-GCHHHHHHHHHHHTC------SSSCEEEETTEEEEC
T ss_pred HHHHHHHcCCCcEEEEC-------C-CCHHHHHHHHHHHCC------CCCCeEEECCEEEeC
Confidence 36688888887555431 1 233444454444443 357999999987755
No 49
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.43 E-value=99 Score=23.63 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeec
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 383 (411)
...++++++++..+++ ++ .|+-+.+++....+ +.-+|+|+|||....|
T Consensus 38 ~~~~L~~~~i~~~~vd-------i~-~~~~~~~~l~~~~g------~~~vP~v~i~g~~igg 85 (105)
T 2yan_A 38 ILEILNSTGVEYETFD-------IL-EDEEVRQGLKAYSN------WPTYPQLYVKGELVGG 85 (105)
T ss_dssp HHHHHHHHTCCCEEEE-------GG-GCHHHHHHHHHHHT------CCSSCEEEETTEEEEC
T ss_pred HHHHHHHCCCCeEEEE-------CC-CCHHHHHHHHHHHC------CCCCCeEEECCEEEeC
Confidence 3567788887654442 12 23444445444433 3568999999987754
No 50
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=20.80 E-value=67 Score=24.27 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=21.3
Q ss_pred eEEeeEEE-EcCeeeeccCChhHHHHHH
Q 015215 368 VTILPTLV-INNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 368 v~~~Ptl~-IN~~~yrG~l~~~~v~~aI 394 (411)
+. .|+|+ +||+...|.++.+.+.++|
T Consensus 46 ~~-vPtl~~~~G~~v~g~~~~~~L~~~l 72 (87)
T 1ttz_A 46 LR-VPVLRDPMGRELDWPFDAPRLRAWL 72 (87)
T ss_dssp TT-CSEEECTTCCEEESCCCHHHHHHHH
T ss_pred CC-cCeEEEECCEEEeCCCCHHHHHHHH
Confidence 35 89999 8999887888888877766
No 51
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.50 E-value=1.1e+02 Score=22.77 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=29.2
Q ss_pred HHHHHHHhCCChhhcccccCCccCcccchHHHHHHHHHhCCCCCCceEEeeEEEEcCeeeec
Q 015215 322 AEQVIKSLGVDLKKVDECVGDPEADVDNQVLKTEQDAQIGKGSRGDVTILPTLVINNRQYRG 383 (411)
Q Consensus 322 ~~~v~~~l~id~~~v~~C~~~~~~d~~n~iL~~e~~~q~~~~~~~~v~~~Ptl~IN~~~yrG 383 (411)
+.++++..+++...++= + .++-+.+++....|.+ ..-+|.|+|||...-|
T Consensus 24 ak~~L~~~~i~~~~~di-------~-~~~~~~~~l~~~~g~~----~~~vP~ifi~g~~igG 73 (93)
T 1t1v_A 24 VTRILDGKRIQYQLVDI-------S-QDNALRDEMRTLAGNP----KATPPQIVNGNHYCGD 73 (93)
T ss_dssp HHHHHHHTTCCCEEEET-------T-SCHHHHHHHHHHTTCT----TCCSCEEEETTEEEEE
T ss_pred HHHHHHHCCCceEEEEC-------C-CCHHHHHHHHHHhCCC----CCCCCEEEECCEEEeC
Confidence 45677788876544432 1 2233445555554421 2468999999987644
No 52
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=20.43 E-value=1.1e+02 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=19.7
Q ss_pred EEeeEEEEcCeeeeccCChhHHHHHH
Q 015215 369 TILPTLVINNRQYRGKLDKGAVLKAI 394 (411)
Q Consensus 369 ~~~Ptl~IN~~~yrG~l~~~~v~~aI 394 (411)
.-.|+|+||+..+-|..+.+.+.++|
T Consensus 76 ~~vP~l~i~~~~~igg~~~~~l~~~L 101 (103)
T 3nzn_A 76 VSFPTTIINDEKAIVGFKEKEIRESL 101 (103)
T ss_dssp CCSCEEEETTTEEEESCCHHHHHHHT
T ss_pred CccCEEEECCCEEEEcCCHHHHHHHh
Confidence 56799999994455777888877664
Done!