BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015216
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 72/101 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 63
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+I+++I + TV+++NY K FWNL H+ P+R+ G
Sbjct: 64 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKG 104
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXX 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 7 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 66
Query: 83 XXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 67 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 123
Query: 143 G 143
Sbjct: 124 A 124
>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 72/101 (71%)
Query: 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVL 302
L +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD +
Sbjct: 2 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 61
Query: 303 YQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+I+++I + TV+++NY K FWNL H+ P+R+ G
Sbjct: 62 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKG 102
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXX 82
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 5 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKI 64
Query: 83 XXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 65 RDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDA 121
Query: 143 G 143
Sbjct: 122 A 122
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 73/102 (71%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRAT 71
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ +I+++I + TV+++NY K FWNL H+ P+R+ G
Sbjct: 72 VRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKG 113
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIR 76
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 113 bits (282), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 69/95 (72%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
++ +FV+ D LPD P+VYAS+ F +TGY +EV+G NCRFL G TD + +I+++I
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAI 61
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+ +AC+VR+LNYRKD + FWNLL ++PI+ G+
Sbjct: 62 KKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGR 96
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXX 86
L +F + D ++ P+V+AS GF M+G+ E++G N R QG T+
Sbjct: 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAI 61
Query: 87 XXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135
V LLNY+KDGTPFW L ++ + DGR + FV VQV + S
Sbjct: 62 KKGEACSVRLLNYRKDGTPFWNLLTVTPI-KTPDGRVSKFVGVQVDVTS 109
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 72/102 (70%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRAT 71
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ +I+++I + TV+++NY K FWNL H+ P+R+ G
Sbjct: 72 VRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKG 113
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIR 76
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 72/102 (70%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L RI+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD
Sbjct: 12 SLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRAT 71
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ +I+++I + TV+++NY K FWNL H+ P+R+ G
Sbjct: 72 VRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKG 113
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
L+ + +F ITDP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNMRFLQGPETDRATVRKIR 76
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143
V L+NY K G FW LF + + ++ G +F+ VQ+ +H+R++
Sbjct: 77 DAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQK-GDVQYFIGVQLD--GTEHVRDAA 133
>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 110 bits (276), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 69/94 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I++SFV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 9 IEKSFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAI 68
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ ++ TV+++NY K FWNLLH+ P+R+ G
Sbjct: 69 RDQRETTVQLINYTKSGKKFWNLLHLQPVRDRKG 102
Score = 83.2 bits (204), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
SF ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T+
Sbjct: 12 SFVITDPRLPDYPIIFASDGFLELTEYSREEIMGRNARFLQGPETDQATVQKIRDAIRDQ 71
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW L + V ++ G +F+ VQ+
Sbjct: 72 RETTVQLINYTKSGKKFWNLLHLQPVRDRKGG-LQYFIGVQL 112
>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 72/112 (64%)
Query: 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNG 294
G+ +S L +L +Q+FV+ D PD P++YAS F +TGY EVVG+NCRFL G
Sbjct: 1 GIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQG 60
Query: 295 VDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQL 346
TD L +I+E++ RILNY+KD +SFWNLL I+PI++ SGK L
Sbjct: 61 SGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPIKDESGKVL 112
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXX 79
+ +AL +F ++D + +PI++AS GF M+G++ E++GRN R QG T+
Sbjct: 9 LKDALSTFQQTFVVSDATKPDYPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDADEL 68
Query: 80 XXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
+LNYKKDGT FW L ++ + E G+ F+ +QV +
Sbjct: 69 AKIRETLAAGNNYCGRILNYKKDGTSFWNLLTIAPI-KDESGKVLKFIGMQVEV 121
>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 71/95 (74%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+NCRFL G +TD + +I+++I
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAI 65
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+ ++ TV+++NY K FWNL H+ P+R+ G+
Sbjct: 66 RDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGE 100
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPM-RDQKGELQYFIGVQL 109
>pdb|4EES|A Chain A, Crystal Structure Of Ilov
pdb|4EET|B Chain B, Crystal Structure Of Ilov
pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 109 bits (273), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 70/95 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+++FV+ DP LPD P+++ASD FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 6 IEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+ ++ TV+++NY K FWNLLH+ P+R+ G+
Sbjct: 66 RDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGE 100
Score = 82.0 bits (201), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F ITDP + +PI+FAS GFL+++ +SR EI+GRN R QGP T+
Sbjct: 9 NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW L + V + G +F+ VQ+
Sbjct: 69 RETTVQLINYTKSGKKFWNLLHLQPV-RDQKGELQYFIGVQL 109
>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State).
pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
Protein From Brucella Abortus (Dark State)
Length = 128
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 66/90 (73%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
++ +PHLPD P+V+A+ AFLKLTGY+ +EV+G+NCRFL G TD + IK +I E+
Sbjct: 11 LITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKP 70
Query: 315 CTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+ I+NY+K +FWN LHISP+ NA+G+
Sbjct: 71 IDIDIINYKKSGEAFWNRLHISPVHNANGR 100
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 33 ITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXXXXX 92
IT+P + +PIVFA+ FLK++G+ E++GRN R QG T+
Sbjct: 12 ITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPI 71
Query: 93 XVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
++++NYKK G FW +S V +GR HFV+ Q+
Sbjct: 72 DIDIINYKKSGEAFWNRLHISPVHNA-NGRLQHFVSSQL 109
>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 106 bits (265), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 70/95 (73%)
Query: 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESI 309
I+++FV+ DP LPD P+++ASD+FL+LT Y R E++G+N RFL G +TD + +I+++I
Sbjct: 6 IEKNFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
+ ++ TV+++NY K FWNL H+ P+R+ G+
Sbjct: 66 RDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGE 100
Score = 78.6 bits (192), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+F I+DP + +PI+FAS FL+++ +SR EI+GRN R QGP T+
Sbjct: 9 NFVISDPRLPDNPIIFASDSFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQ 68
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQV 131
V L+NY K G FW LF + + + G +F+ VQ+
Sbjct: 69 REITVQLINYTKSGKKFWNLFHLQPM-RDQKGELQYFIGVQL 109
>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Query: 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298
+S L +L ++Q+FV+ D P P+VYAS F +TGY E+VG+NCRFL G DTD
Sbjct: 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTD 63
Query: 299 TTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTIC 358
+ +I++ ++ ++ R+LNY+KD + FWNLL ++PI++ G N+ F
Sbjct: 64 KNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQG-------NTIKFIGM 116
Query: 359 PVEIAYFA 366
VE++ +
Sbjct: 117 QVEVSKYT 124
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT 74
R + + AL L +F ++D + PIV+AS GF M+G+S EI+GRN R QGP T
Sbjct: 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDT 62
Query: 75 NXXXXXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPI 133
+ LLNYKKDGTPFW L ++ + K+D G F+ +QV +
Sbjct: 63 DKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDQGNTIKFIGMQVEV 120
>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 103 bits (256), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 65/92 (70%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311
+SFV+ DP LPD P+++ASD FL+LT Y R EV+G NCRFL G TD + I+++++
Sbjct: 1 KSFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKE 60
Query: 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
++ TV++LNY K +FWNL H+ +R+ +G
Sbjct: 61 QRDVTVQVLNYTKGGRAFWNLFHLQVMRDENG 92
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
SF ITDP + +PI+FAS FL+++ ++R E++G N R QG T+
Sbjct: 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQ 61
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V +LNY K G FW LF + V E+G +F+ VQ
Sbjct: 62 RDVTVQVLNYTKGGRAFWNLFHLQ-VMRDENGDVQYFIGVQ 101
>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 69/102 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 40 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 99
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ +I+ +I +V +LNYR+D ++FWNL ++ +R++ G
Sbjct: 100 VDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKG 141
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXX 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+
Sbjct: 43 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 102
Query: 82 XXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 103 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 150
>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 69/102 (67%)
Query: 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTV 301
SL +L +Q+FV+ D LPD P+VYAS FL LTGY ++++G+NCRFL G +TD
Sbjct: 36 SLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRA 95
Query: 302 LYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASG 343
+ +I+ +I +V +LNYR+D ++FWNL ++ +R++ G
Sbjct: 96 VDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKG 137
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXX 81
+AL +F ITD S+ +PIV+ASRGFL ++G+S +I+GRN R QGP T+
Sbjct: 39 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDK 98
Query: 82 XXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKED--GRATHFVAVQ 130
V LLNY++DGT FW LF V G D G ++V VQ
Sbjct: 99 IRNAITKGVDTSVCLLNYRQDGTTFWNLF---FVAGLRDSKGNIVNYVGVQ 146
>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 92.0 bits (227), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 61/92 (66%)
Query: 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIK 306
L ++ V+ DP L D P+VY + F+++TGY+ E++G+NCRFL G TD + I+
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 307 ESIQTEQACTVRILNYRKDKSSFWNLLHISPI 338
++Q ++ TV+I NY+KD + FWN L+I P+
Sbjct: 65 TALQNKEPVTVQIQNYKKDGTMFWNELNIDPM 96
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
LD + ITDP++ +PIV+ ++GF++M+G+ EI+G+N R QG T+
Sbjct: 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIR 64
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137
V + NYKKDGT FW + + E T+FV +Q I +K
Sbjct: 65 TALQNKEPVTVQIQNYKKDGTMFWNELNIDPM---EIEDKTYFVGIQNDITKQK 115
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%)
Query: 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314
V+ DP L D P++ + AF LTGY E VG+NCRFL G T+ + +I++ ++ +
Sbjct: 77 VVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136
Query: 315 CTVRILNYRKDKSSFWNLLHISPI 338
V ILNY+KD + F N + ++PI
Sbjct: 137 VLVEILNYKKDGTPFRNAVLVAPI 160
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 3/130 (2%)
Query: 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXX 78
WV + ++ P + ++DP ++ +P++ ++ F ++G+S E +GRN R G T
Sbjct: 64 WVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWL 123
Query: 79 XXXXXXXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138
V +LNYKKDGTPF ++ ++ +D +F+ QV + +
Sbjct: 124 TDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIY-DDDDELLYFLGSQVEVDDDQP 182
Query: 139 MRNSGMSYSE 148
N GM+ E
Sbjct: 183 --NMGMARRE 190
>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
Blue-Light Photoreceptor Vivid
Length = 148
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S +L D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 26 VELGPVDTSCALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 85
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + I+++I V ++N++K+ F N L I P+R+ +G+
Sbjct: 86 STRKYVDSNTINTIRKAIDRNAEVQVEVVNFKKNGQRFVNFLTIIPVRDETGE 138
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 48 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 78
>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313
V+ + D ++Y + AF LTGY R+E++ Q+CRFL G D D +I++++ +
Sbjct: 38 IVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGR 97
Query: 314 ACTVRILNYRKDKSSFWNLLHISPIRN 340
C + NYRKD S+FWN L I+P+++
Sbjct: 98 PCREVLRNYRKDGSAFWNELSITPVKS 124
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXX 83
+D D + + +++ + F ++G+SR EI+ ++ R QG +
Sbjct: 31 VDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIR 90
Query: 84 XXXXXXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
L NY+KDG+ FW ++ V D R T+F+ +Q
Sbjct: 91 KAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQR-TYFIGIQ 136
>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd).
pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
(Vvd)
Length = 154
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S VL D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 30 VELGPVDTSCALVLCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 89
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 90 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 142
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd).
pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
Vivid (Vvd)
Length = 154
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S VL D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 30 VELGPVDTSCALVLCDLKQKDTPVVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 89
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 90 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 142
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
P+V+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PVVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
The Fungal Photoreceptor Vvd
Length = 149
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQSFVLI--DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S LI D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 27 VELGPVDTSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 86
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 87 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 139
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 49 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 79
>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQSFVLI--DPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S LI D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 30 VELGPVDTSXALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 89
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 90 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 142
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
Form Of Vivid
Length = 154
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S +L D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 30 VELGPVDTSCALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 89
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 90 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 142
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 52 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 82
>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
Vivid
Length = 149
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S +L D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 27 VELGPVDTSSALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 86
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 87 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 139
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 49 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 79
>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
Photoreceptor Vivid
pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
Light Photoreceptor Vivid
pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
Length = 149
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 245 ISLGRIKQS--FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD------ 296
+ LG + S +L D D P+VYAS+AFL +TGY EV+G+NCRFL D
Sbjct: 27 VELGPVDTSCALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPK 86
Query: 297 -----TDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGK 344
D+ + ++++I V ++N++K+ F N L + P+R+ +G+
Sbjct: 87 STRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGE 139
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 42 PIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72
PIV+AS FL M+G+S AE++GRN R Q P
Sbjct: 49 PIVYASEAFLYMTGYSNAEVLGRNCRFLQSP 79
>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 177
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ L+D LP+ P+V A+ FL++TGY +++G NCRFL D + I+++++
Sbjct: 20 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 79
Query: 313 QACTVRILNYRKDKSSFWNLLHISPI 338
+ V + NYR + F NLL + P+
Sbjct: 80 RELQVVLRNYRANDEPFDNLLFLHPV 105
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 20 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 79
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V L NY+ + PF L + V G+ D +F+ Q
Sbjct: 80 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQ 119
>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 178
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ L+D LP+ P+V A+ FL++TGY +++G NCRFL D + I+++++
Sbjct: 21 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 80
Query: 313 QACTVRILNYRKDKSSFWNLLHISPI 338
+ V + NYR + F NLL + P+
Sbjct: 81 RELQVVLRNYRANDEPFDNLLFLHPV 106
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 21 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 80
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V L NY+ + PF L + V G+ D +F+ Q +
Sbjct: 81 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQFEL 123
>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ L+D LP+ P+V A+ FL++TGY +++G NCRFL D + I+++++
Sbjct: 19 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 78
Query: 313 QACTVRILNYRKDKSSFWNLLHISPI 338
+ V + NYR + F NLL + P+
Sbjct: 79 RELQVVLRNYRANDEPFDNLLFLHPV 104
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 19 ALTLVDMSLPEQPLVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 78
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPI 133
V L NY+ + PF L + V G+ D +F+ Q +
Sbjct: 79 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQFEL 121
>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
Length = 176
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312
+ L+D LP+ P+V A+ FL++TGY +++G NCRFL D + I+++++
Sbjct: 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 78
Query: 313 QACTVRILNYRKDKSSFWNLLHISPI 338
+ V + NYR + F NLL + P+
Sbjct: 79 RELQVVLRNYRANDEPFDNLLFLHPV 104
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNXXXXXXXXXXXXXX 89
+ T+ D S+ P+V A+ FL+M+G++ +I+G N R Q N
Sbjct: 19 ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLG 78
Query: 90 XXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130
V L NY+ + PF L + V G+ D +F+ Q
Sbjct: 79 RELQVVLRNYRANDEPFDNLLFLHPVGGRPDA-PDYFLGSQ 118
>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
Herg Potassium Channel
Length = 138
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESI 309
+ F++ + + + ++Y +D F +L GY R EV+ + C FL+G T QI +++
Sbjct: 30 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQAL 89
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFN 351
+ V I YRKD S F L+ + P++N G + N
Sbjct: 90 LGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILN 131
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXX 87
F I + + +++ + GF ++ G+SRAE++ R GPRT
Sbjct: 31 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 90
Query: 88 XXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 91 GAEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 129
>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
K+ Channel
Length = 150
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESI 309
+ F++ + + + ++Y +D F +L GY R EV+ + C FL+G T QI +++
Sbjct: 27 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQAL 86
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFN 351
+ V I YRKD S F L+ + P++N G + N
Sbjct: 87 LGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILN 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXX 87
F I + + +++ + GF ++ G+SRAE++ R GPRT
Sbjct: 28 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALL 87
Query: 88 XXXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 88 GAEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 126
>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
Herg
Length = 135
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESI 309
+ F++ + + + ++Y +D F +L GY R EV+ + C FL+G T QI +++
Sbjct: 27 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQAL 86
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFN 351
+ V I YRKD S F L+ + P++N G + N
Sbjct: 87 LGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILN 128
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXXX 88
F I + + +++ + GF ++ G+SRAE++ R GPRT
Sbjct: 29 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLG 88
Query: 89 XXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 89 AEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 126
>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
Potassium Channel
Length = 110
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESI 309
+ F++ + + + ++Y +D F +L GY R EV+ + C FL+G T QI +++
Sbjct: 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQAL 61
Query: 310 QTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFN 351
+ V I YRKD S F L+ + P++N G + N
Sbjct: 62 LGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILN 103
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNXXXXXXXXXXXXX 88
F I + + +++ + GF ++ G+SRAE++ R GP T
Sbjct: 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLG 63
Query: 89 XXXXXVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFV 127
V + Y+KDG+ F L + V EDG F+
Sbjct: 64 AEERKVEIAFYRKDGSCFLCLVDVVPV-KNEDGAVIMFI 101
>pdb|2GJ3|A Chain A, Crystal Structure Of The Fad-Containing Pas Domain Of The
Protein Nifl From Azotobacter Vinelandii.
pdb|2GJ3|B Chain B, Crystal Structure Of The Fad-Containing Pas Domain Of The
Protein Nifl From Azotobacter Vinelandii
Length = 120
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
++YA+ AF +TGY EV+G+N L+ T V + + ++ + ++N RKD
Sbjct: 27 ILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKD 86
Query: 326 KSSFWNLLHISPIRNASGKQL 346
K+ + L ++P+ N +G+ +
Sbjct: 87 KTLYLAELTVAPVLNEAGETI 107
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN 65
+ ++ P + +ITD + I++A+R F ++G+ E++G+N
Sbjct: 9 QTVEHAPIAISITDLKAN---ILYANRAFRTITGYGSEEVLGKN 49
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK- 324
++YA+ A + +G E++GQ+ L+ D L ++E++Q Q + R+LN R+
Sbjct: 133 IIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRT 192
Query: 325 -----DKSSFWNLLHISPI 338
D +W + +PI
Sbjct: 193 GPAPHDAEDYWAEISTTPI 211
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 266 MVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325
++YA+D F ++ Y R E+VGQ+ R +N + + +I N RKD
Sbjct: 11 ILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKD 70
Query: 326 KSSFWNLLHISPIRNASGK 344
+ +W I P+ + +GK
Sbjct: 71 GTRYWVDSTIVPLMDNAGK 89
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 411 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 469
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 470 PIFTLEGQEGRLF-GP 484
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 1 MDSQLGLIEQSFNNRYTLWVHEALDELPDSFT----ITDPSISGHPIVFASRGFLKMSGF 56
+D+ + +IE + + R W H+ D D+ T ITD S+ P +F S + +S
Sbjct: 412 VDAAIVMIENA-HKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFI 470
Query: 57 SRAEIIGRNGRMFQGP 72
+ G+ GR+F GP
Sbjct: 471 PIFTLEGQEGRLF-GP 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,191,058
Number of Sequences: 62578
Number of extensions: 424782
Number of successful extensions: 951
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 81
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)