Query 015216
Match_columns 411
No_of_seqs 333 out of 1432
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 08:43:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 4.9E-33 1.7E-37 249.0 28.7 221 30-371 1-227 (227)
2 4f3l_A Mclock, circadian locom 99.9 1.5E-23 5E-28 200.1 20.1 238 17-379 85-360 (361)
3 4f3l_B BMAL1B; BHLH, PAS, circ 99.9 2.9E-22 9.8E-27 192.7 20.2 107 251-377 278-386 (387)
4 2pr5_A Blue-light photorecepto 99.8 4.6E-20 1.6E-24 149.6 16.7 130 245-393 3-132 (132)
5 3mr0_A Sensory box histidine k 99.8 4.5E-20 1.5E-24 151.8 16.8 138 235-392 3-142 (142)
6 3rty_A Period circadian protei 99.8 9.2E-20 3.1E-24 170.9 19.3 217 30-375 5-264 (339)
7 2gj3_A Nitrogen fixation regul 99.8 8.7E-20 3E-24 145.3 15.3 117 17-137 4-120 (120)
8 2gj3_A Nitrogen fixation regul 99.8 5.3E-19 1.8E-23 140.7 15.7 117 240-376 4-120 (120)
9 3f1p_B ARYL hydrocarbon recept 99.8 2.9E-19 9.9E-24 142.3 10.6 116 19-138 3-120 (121)
10 1n9l_A PHOT-LOV1, putative blu 99.8 1.6E-18 5.5E-23 135.7 14.6 109 26-135 1-109 (109)
11 3p7n_A Sensor histidine kinase 99.8 2.8E-18 9.5E-23 155.9 18.2 140 238-394 60-201 (258)
12 1n9l_A PHOT-LOV1, putative blu 99.8 2.3E-18 8E-23 134.8 14.8 108 250-374 2-109 (109)
13 4hia_A LOV protein; PAS, HTH, 99.8 1.4E-18 4.8E-23 147.8 14.6 125 15-140 4-128 (176)
14 2pr5_A Blue-light photorecepto 99.8 3E-18 1E-22 138.8 15.4 116 21-139 2-117 (132)
15 3f1p_B ARYL hydrocarbon recept 99.8 1.3E-18 4.4E-23 138.5 12.3 113 245-377 6-120 (121)
16 4hia_A LOV protein; PAS, HTH, 99.8 4.3E-18 1.5E-22 144.7 16.1 127 241-384 7-133 (176)
17 3mr0_A Sensory box histidine k 99.8 5.4E-18 1.9E-22 139.3 14.9 121 15-139 6-128 (142)
18 3f1p_A Endothelial PAS domain- 99.8 1.9E-18 6.6E-23 136.5 11.4 108 27-138 8-116 (117)
19 3t50_A Blue-light-activated hi 99.8 6.2E-18 2.1E-22 135.3 14.3 125 247-388 3-127 (128)
20 3ue6_A Aureochrome1; PAS/LOV d 99.8 1.3E-17 4.5E-22 139.8 16.3 134 232-382 26-159 (166)
21 3ue6_A Aureochrome1; PAS/LOV d 99.8 3.8E-18 1.3E-22 143.1 12.8 124 15-139 32-155 (166)
22 4dj3_A Period circadian protei 99.8 1E-16 3.5E-21 148.7 22.5 119 253-391 176-311 (317)
23 3f1p_A Endothelial PAS domain- 99.8 2.8E-18 9.4E-23 135.6 9.6 108 250-377 8-116 (117)
24 3t50_A Blue-light-activated hi 99.7 1.4E-17 4.9E-22 133.2 12.6 118 23-141 2-119 (128)
25 4eet_B Phototropin-2; LOV, blu 99.7 3.8E-17 1.3E-21 127.4 14.3 111 23-137 2-115 (115)
26 3p7n_A Sensor histidine kinase 99.7 3.5E-17 1.2E-21 148.5 15.9 123 15-138 60-182 (258)
27 3sw1_A Sensory box protein; li 99.7 3.9E-17 1.3E-21 136.4 14.7 135 239-393 23-160 (162)
28 3nja_A Probable ggdef family p 99.7 1.6E-17 5.4E-22 131.7 10.7 120 15-138 4-125 (125)
29 3mqq_A Transcriptional regulat 99.7 1.9E-17 6.6E-22 131.4 10.1 115 19-139 4-119 (120)
30 3nja_A Probable ggdef family p 99.7 5.6E-17 1.9E-21 128.5 12.8 121 237-377 3-125 (125)
31 3lyx_A Sensory BOX/ggdef domai 99.7 1.2E-16 4.2E-21 125.3 14.7 120 15-138 4-123 (124)
32 4dj2_A Period circadian protei 99.7 3.8E-16 1.3E-20 145.0 19.5 103 253-375 178-283 (320)
33 3ewk_A Sensor protein; PAS dom 99.7 1.5E-16 5.1E-21 141.6 16.1 118 254-391 2-119 (227)
34 3k3c_A Protein RV1364C/MT1410; 99.7 1.7E-16 5.9E-21 132.1 15.2 130 240-391 16-151 (158)
35 4eet_B Phototropin-2; LOV, blu 99.7 2.4E-16 8.3E-21 122.7 14.8 114 246-376 2-115 (115)
36 3h9w_A Diguanylate cyclase wit 99.7 5E-17 1.7E-21 128.0 10.8 112 250-380 2-114 (115)
37 1d06_A Nitrogen fixation regul 99.7 1.3E-16 4.5E-21 128.6 13.4 124 4-134 3-130 (130)
38 3h9w_A Diguanylate cyclase wit 99.7 5.7E-17 1.9E-21 127.6 10.6 110 27-139 2-112 (115)
39 3gdi_A Period circadian protei 99.7 6.4E-16 2.2E-20 142.9 19.3 102 253-374 167-271 (309)
40 2v0u_A NPH1-1, LOV2; kinase, t 99.7 1.1E-15 3.7E-20 123.7 17.9 139 245-401 6-145 (146)
41 2wkq_A NPH1-1, RAS-related C3 99.7 5.2E-16 1.8E-20 146.2 17.7 126 246-388 16-141 (332)
42 3mqq_A Transcriptional regulat 99.7 9E-17 3.1E-21 127.5 10.1 114 243-378 5-119 (120)
43 2z6d_A Phototropin-2; PAS-fold 99.7 5.9E-16 2E-20 122.3 14.8 121 15-139 3-126 (130)
44 2vv6_A FIXL, sensor protein FI 99.7 2E-16 6.8E-21 125.4 11.9 113 250-384 2-118 (119)
45 3sw1_A Sensory box protein; li 99.7 6.2E-16 2.1E-20 129.0 14.0 120 16-139 23-145 (162)
46 2z6d_A Phototropin-2; PAS-fold 99.7 1.2E-15 4.1E-20 120.5 14.8 123 239-381 4-129 (130)
47 2r78_A Sensor protein; sensory 99.7 1.1E-15 3.7E-20 121.0 14.5 110 15-134 8-117 (117)
48 2vv6_A FIXL, sensor protein FI 99.7 8.1E-16 2.8E-20 121.8 13.2 110 26-141 1-114 (119)
49 3mxq_A Sensor protein; PSI2, M 99.7 2.3E-16 7.8E-21 131.0 10.2 120 15-139 19-150 (152)
50 3lyx_A Sensory BOX/ggdef domai 99.7 1.8E-15 6.1E-20 118.6 14.9 119 239-377 5-123 (124)
51 3luq_A Sensor protein; PAS, hi 99.7 8.5E-16 2.9E-20 119.6 12.6 111 18-134 3-114 (114)
52 3k3c_A Protein RV1364C/MT1410; 99.7 6.6E-16 2.3E-20 128.6 12.3 119 15-139 14-138 (158)
53 3icy_A Sensor protein; sensory 99.7 3E-16 1E-20 123.2 9.6 114 17-134 3-118 (118)
54 3kx0_X Uncharacterized protein 99.7 5.4E-16 1.9E-20 133.3 11.4 134 239-394 35-178 (185)
55 2wkq_A NPH1-1, RAS-related C3 99.6 2.9E-15 9.8E-20 141.1 16.2 119 20-139 13-131 (332)
56 2kdk_A ARYL hydrocarbon recept 99.6 1.7E-15 5.8E-20 120.0 12.4 112 22-137 7-120 (121)
57 2r78_A Sensor protein; sensory 99.6 4.2E-15 1.4E-19 117.6 13.5 114 234-373 4-117 (117)
58 3luq_A Sensor protein; PAS, hi 99.6 6.6E-15 2.3E-19 114.4 14.5 112 241-373 3-114 (114)
59 2kdk_A ARYL hydrocarbon recept 99.6 3.8E-15 1.3E-19 117.9 12.8 111 246-376 8-120 (121)
60 1d06_A Nitrogen fixation regul 99.6 1.4E-15 4.7E-20 122.6 10.2 116 236-373 11-130 (130)
61 3icy_A Sensor protein; sensory 99.6 1.9E-15 6.6E-20 118.5 10.6 114 240-373 3-118 (118)
62 3kx0_X Uncharacterized protein 99.6 2E-15 6.7E-20 129.8 11.5 119 15-139 34-158 (185)
63 2v0u_A NPH1-1, LOV2; kinase, t 99.6 3.6E-15 1.2E-19 120.6 12.3 116 20-139 4-122 (146)
64 3eeh_A Putative light and redo 99.6 3.2E-15 1.1E-19 117.5 11.2 116 15-134 8-125 (125)
65 3olo_A Two-component sensor hi 99.6 1.6E-14 5.6E-19 113.1 13.6 108 16-134 11-118 (118)
66 3bwl_A Sensor protein; structu 99.6 2.5E-14 8.5E-19 114.0 14.4 120 5-134 5-126 (126)
67 3mxq_A Sensor protein; PSI2, M 99.6 3.7E-15 1.3E-19 123.6 9.1 117 242-379 23-151 (152)
68 3eeh_A Putative light and redo 99.6 8.6E-15 2.9E-19 115.1 10.8 119 234-373 4-125 (125)
69 1byw_A Protein (human ERG pota 99.6 5E-14 1.7E-18 107.6 14.4 107 29-136 2-110 (110)
70 2l0w_A Potassium voltage-gated 99.6 3.9E-14 1.3E-18 113.3 14.0 116 17-136 18-138 (138)
71 3mjq_A Uncharacterized protein 99.6 1E-14 3.5E-19 115.6 10.1 119 245-386 3-121 (126)
72 3mjq_A Uncharacterized protein 99.6 7.9E-15 2.7E-19 116.3 8.8 115 21-142 2-116 (126)
73 1byw_A Protein (human ERG pota 99.5 1.2E-13 4.3E-18 105.4 14.1 107 252-375 2-110 (110)
74 4eho_A Bacteriophytochrome, PA 99.5 5.4E-15 1.8E-19 150.8 6.6 116 19-139 519-634 (635)
75 1v9y_A Heme PAS sensor protein 99.5 5.6E-14 1.9E-18 117.1 11.7 121 15-141 37-161 (167)
76 1v9y_A Heme PAS sensor protein 99.5 7.3E-14 2.5E-18 116.4 11.6 127 236-384 35-165 (167)
77 2l0w_A Potassium voltage-gated 99.5 3.3E-13 1.1E-17 107.8 15.0 118 241-375 19-138 (138)
78 3olo_A Two-component sensor hi 99.5 1.2E-13 4.2E-18 108.1 12.1 108 239-373 11-118 (118)
79 3d72_A Vivid PAS protein VVD; 99.5 1.3E-13 4.3E-18 113.3 12.4 106 22-132 30-149 (149)
80 3bwl_A Sensor protein; structu 99.5 7.4E-14 2.5E-18 111.2 10.0 116 233-373 9-126 (126)
81 3fc7_A HTR-like protein, senso 99.5 2.4E-14 8.1E-19 113.6 6.9 108 16-134 17-125 (125)
82 3d72_A Vivid PAS protein VVD; 99.5 4.4E-13 1.5E-17 110.0 13.6 104 251-371 35-149 (149)
83 4eho_A Bacteriophytochrome, PA 99.5 2E-14 7E-19 146.5 5.2 117 242-379 519-635 (635)
84 3vol_A Aerotaxis transducer AE 99.5 4.7E-13 1.6E-17 119.5 13.0 110 16-139 20-141 (233)
85 3vol_A Aerotaxis transducer AE 99.5 1.5E-12 5.1E-17 116.2 16.0 119 241-389 22-152 (233)
86 3mfx_A Sensory BOX/ggdef famil 99.5 2.5E-13 8.4E-18 109.6 9.8 112 17-135 6-124 (129)
87 3mfx_A Sensory BOX/ggdef famil 99.4 3.4E-13 1.2E-17 108.7 10.2 111 241-374 7-124 (129)
88 3fg8_A Uncharacterized protein 99.4 5.9E-14 2E-18 111.1 5.1 109 16-136 10-118 (118)
89 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 2.6E-13 9.1E-18 130.2 10.7 108 28-138 278-386 (387)
90 4f3l_A Mclock, circadian locom 99.4 1.8E-13 6.3E-18 130.2 9.2 108 28-139 251-359 (361)
91 2vlg_A Sporulation kinase A; h 99.4 3.1E-13 1.1E-17 105.9 8.8 93 22-121 3-95 (111)
92 2vlg_A Sporulation kinase A; h 99.4 3.7E-13 1.3E-17 105.4 8.1 93 246-344 4-96 (111)
93 4hi4_A Aerotaxis transducer AE 99.4 2E-12 6.7E-17 102.7 12.3 105 17-136 4-121 (121)
94 2qkp_A Uncharacterized protein 99.4 2.6E-12 8.8E-17 106.4 12.5 116 17-139 18-136 (151)
95 3b33_A Sensor protein; structu 99.3 7E-12 2.4E-16 97.9 11.3 106 20-134 9-115 (115)
96 4hi4_A Aerotaxis transducer AE 99.3 2.1E-11 7.1E-16 96.7 13.3 105 241-375 5-121 (121)
97 3fc7_A HTR-like protein, senso 99.3 2.3E-12 7.9E-17 101.8 6.7 108 239-373 17-125 (125)
98 2qkp_A Uncharacterized protein 99.3 1.1E-11 3.7E-16 102.6 10.8 121 240-383 18-141 (151)
99 3fg8_A Uncharacterized protein 99.3 2.3E-12 7.8E-17 101.8 6.0 106 242-375 13-118 (118)
100 3rty_A Period circadian protei 99.3 5.4E-11 1.9E-15 111.3 14.9 109 27-138 153-266 (339)
101 3b33_A Sensor protein; structu 99.2 3.8E-11 1.3E-15 93.7 10.2 106 243-373 9-115 (115)
102 2ykf_A Pdtas, probable sensor 98.9 1.1E-12 3.6E-17 121.7 0.0 120 246-392 175-303 (305)
103 2w0n_A Sensor protein DCUS; si 99.2 1E-11 3.6E-16 96.7 5.2 104 15-134 12-118 (118)
104 1ll8_A PAS kinase; PAS domain, 99.2 9E-12 3.1E-16 97.4 4.7 102 249-373 6-113 (114)
105 1ll8_A PAS kinase; PAS domain, 99.2 1.4E-11 4.7E-16 96.3 5.5 103 26-134 6-113 (114)
106 3cax_A Uncharacterized protein 99.2 1.3E-10 4.4E-15 110.8 12.4 114 16-139 237-350 (369)
107 3a0s_A Sensor protein; PAS-fol 99.1 5.8E-10 2E-14 82.4 11.3 95 27-132 1-96 (96)
108 3a0r_A Sensor protein; four he 99.1 5.8E-11 2E-15 112.1 6.6 115 243-384 10-125 (349)
109 2jhe_A Transcription regulator 99.1 1.4E-10 4.7E-15 99.6 8.4 108 15-138 77-190 (190)
110 1nwz_A PYP, photoactive yellow 99.1 1.7E-09 5.8E-14 85.1 13.1 100 21-127 20-121 (125)
111 3a0r_A Sensor protein; four he 99.1 5.1E-11 1.7E-15 112.5 4.9 116 15-141 5-121 (349)
112 1mzu_A PPR; photoactive yellow 99.1 1.3E-09 4.5E-14 85.9 12.0 99 22-127 26-126 (129)
113 4dj3_A Period circadian protei 99.1 1E-09 3.5E-14 101.6 12.3 107 29-138 175-284 (317)
114 3cax_A Uncharacterized protein 99.0 8.3E-10 2.8E-14 105.1 10.4 118 238-381 236-353 (369)
115 3a0s_A Sensor protein; PAS-fol 99.0 3.9E-09 1.4E-13 77.8 11.4 96 250-371 1-96 (96)
116 2w0n_A Sensor protein DCUS; si 99.0 1.3E-10 4.6E-15 90.3 3.2 106 236-373 10-118 (118)
117 4dj2_A Period circadian protei 99.0 1.5E-09 5.3E-14 100.6 10.4 107 29-138 177-285 (320)
118 3gdi_A Period circadian protei 99.0 2.5E-09 8.4E-14 98.8 11.0 106 30-138 167-274 (309)
119 1nwz_A PYP, photoactive yellow 98.9 2.3E-08 7.8E-13 78.7 11.7 94 245-344 21-116 (125)
120 1mzu_A PPR; photoactive yellow 98.8 4.2E-08 1.4E-12 77.3 12.0 93 246-344 27-121 (129)
121 2jhe_A Transcription regulator 98.8 1.1E-08 3.9E-13 87.4 7.4 108 237-376 76-189 (190)
122 2ykf_A Pdtas, probable sensor 97.9 1.5E-08 5.1E-13 93.7 0.0 109 24-143 176-293 (305)
123 1oj5_A Steroid receptor coacti 98.2 2.3E-06 7.8E-11 66.9 6.3 104 30-137 9-116 (132)
124 1oj5_A Steroid receptor coacti 98.1 6.2E-06 2.1E-10 64.5 7.3 85 254-342 10-98 (132)
125 2ool_A Sensor protein; bacteri 93.8 0.071 2.4E-06 49.2 5.5 44 31-76 45-88 (337)
126 2ool_A Sensor protein; bacteri 91.7 0.2 6.7E-06 46.2 5.3 75 255-335 46-124 (337)
127 4ew7_A Conjugative transfer: r 90.7 0.72 2.5E-05 33.7 6.2 45 9-57 12-56 (127)
128 4dah_A Sporulation kinase D; a 87.3 5.1 0.00018 33.6 10.7 96 15-136 55-152 (217)
129 2hje_A Autoinducer 2 sensor ki 79.1 13 0.00045 31.4 9.2 87 24-135 58-144 (221)
130 1p0z_A Sensor kinase CITA; tra 79.1 19 0.00066 27.5 11.6 90 16-135 37-127 (131)
131 4e04_A Bacteriophytochrome (li 73.9 7.7 0.00026 35.3 7.1 53 30-89 31-83 (327)
132 4dah_A Sporulation kinase D; a 73.8 31 0.0011 28.6 10.8 96 238-375 55-152 (217)
133 3c38_A Autoinducer 2 sensor ki 71.0 15 0.00051 32.1 7.7 88 24-136 77-164 (270)
134 3e4o_A C4-dicarboxylate transp 68.2 66 0.0023 28.7 13.0 96 16-136 100-196 (305)
135 3lif_A Putative diguanylate cy 65.5 58 0.002 27.6 10.9 94 16-135 56-153 (254)
136 4e04_A Bacteriophytochrome (li 64.3 22 0.00076 32.3 8.0 39 254-295 32-70 (327)
137 3s7o_A Bacteriophytochrome; bi 62.1 3.6 0.00012 37.7 2.3 41 30-72 54-94 (343)
138 1p0z_A Sensor kinase CITA; tra 61.9 35 0.0012 25.9 7.9 77 252-374 51-127 (131)
139 3by8_A Sensor protein DCUS; hi 61.5 34 0.0012 26.5 7.8 91 16-137 43-134 (142)
140 3s7o_A Bacteriophytochrome; bi 55.5 9.2 0.00031 35.0 3.8 40 254-295 55-94 (343)
141 3clo_A Transcriptional regulat 48.8 72 0.0024 27.5 8.5 32 251-284 43-74 (258)
142 3clo_A Transcriptional regulat 48.7 64 0.0022 27.8 8.2 45 15-61 30-74 (258)
143 3zq5_A Phytochrome-like protei 43.2 7.1 0.00024 38.1 1.1 42 30-73 31-72 (520)
144 3pxp_A Helix-turn-helix domain 38.7 37 0.0013 30.3 5.0 37 16-55 97-133 (292)
145 3nhq_A Bacteriophytochrome; ph 33.5 81 0.0028 30.5 6.8 71 254-334 29-100 (505)
146 3nhq_A Bacteriophytochrome; ph 33.4 76 0.0026 30.7 6.6 69 31-109 29-98 (505)
147 3c8c_A Methyl-accepting chemot 33.4 91 0.0031 25.6 6.6 52 82-136 95-147 (240)
148 3lid_A Putative sensory BOX/gg 33.0 1.2E+02 0.0042 26.6 7.6 105 15-136 64-177 (295)
149 2w1r_A Spovt, stage V sporulat 28.0 1.9E+02 0.0065 21.6 8.1 88 18-130 6-96 (123)
150 4ew7_A Conjugative transfer: r 26.5 1.9E+02 0.0065 21.1 11.2 34 243-279 22-55 (127)
151 3zq5_A Phytochrome-like protei 24.6 27 0.00093 34.0 1.7 41 254-296 32-72 (520)
152 3b47_A GSU0582, methyl-accepti 22.4 2.6E+02 0.0088 21.2 7.1 48 83-136 72-128 (134)
153 3cwf_A Alkaline phosphatase sy 20.3 2.5E+02 0.0087 20.4 8.1 79 18-135 38-116 (122)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=100.00 E-value=4.9e-33 Score=248.98 Aligned_cols=221 Identities=20% Similarity=0.423 Sum_probs=199.2
Q ss_pred eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCeEEEE
Q 015216 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (411)
Q Consensus 30 ~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 109 (411)
.|+++|.+ |+|+++|++|++++||++++++|+++..+.++.........+++.+..+.++..++..+++||+.+|+.
T Consensus 1 ~i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 77 (227)
T 3ewk_A 1 LVSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVD 77 (227)
T ss_dssp CEEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEE
T ss_pred CEEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeee
Confidence 37889997 999999999999999999999999988877776667777778888889999999999999999999999
Q ss_pred EEEEEeeecCCCeEEEEEEEeecccccccchhcCCccccCCCCcchhHhhhhhhhhhhhhhhhhcccccccccCCCCCCC
Q 015216 110 FKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLE 189 (411)
Q Consensus 110 ~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~ 189 (411)
.+..|+++ .+|.+.+++++.+|||++|++
T Consensus 78 ~~~~p~~d-~~g~~~~~~~~~~DIT~~k~~-------------------------------------------------- 106 (227)
T 3ewk_A 78 STIVPLMD-NAGKPRQYISIRRDITAQKEA-------------------------------------------------- 106 (227)
T ss_dssp EEEEEEEC-SSSCEEEEEEEEEECTTTTHH--------------------------------------------------
T ss_pred eEEEEEEc-CCCCEEEEEEEEEehhhHHHH--------------------------------------------------
Confidence 99999999 899999999999999999997
Q ss_pred ccccchhcHHHHHHHHHhhhhhhhhhhhccccCCceeeeeccCCcchhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEe
Q 015216 190 IEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYA 269 (411)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~ 269 (411)
+.+++. +...+++++++++++|. +|+|+++
T Consensus 107 --------e~~l~~---------------------------------------~~~~~~~~~~~i~~~d~---~g~i~~~ 136 (227)
T 3ewk_A 107 --------EAQLAR---------------------------------------LKQAMDANSEMILLTDR---AGRIIYA 136 (227)
T ss_dssp --------HHHHHH---------------------------------------HHHHHHTCCSEEEEECT---TSCEEEE
T ss_pred --------HHHHHH---------------------------------------HHHHHhcCcCeEEEEcC---CCcEEEE
Confidence 222222 22345778899999999 8899999
Q ss_pred cHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCC------EEEEEEEeeEEEcCCC
Q 015216 270 SDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKS------SFWNLLHISPIRNASG 343 (411)
Q Consensus 270 N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~------~~~~~~~~~~i~~~~g 343 (411)
|++|++++||+++|++|+++..+.++.+.......+.+.+..+.++.+++..++++|. .+|+.++++|++|.+|
T Consensus 137 N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g 216 (227)
T 3ewk_A 137 NPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGN 216 (227)
T ss_dssp CHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSS
T ss_pred chHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCC
Confidence 9999999999999999999998988888888888999999999999999999999997 8999999999999999
Q ss_pred CcccccccCccccccccceeEEEEEeec
Q 015216 344 KQLASTFNSTSFTICPVEIAYFAAVHTE 371 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~~~~~~D 371 (411)
. +.+++++.+|
T Consensus 217 ~-----------------~~~~v~i~~D 227 (227)
T 3ewk_A 217 G-----------------LVGYVQIQHD 227 (227)
T ss_dssp C-----------------EEEEEEEEEC
T ss_pred C-----------------EEEEEEEecC
Confidence 9 9999999987
No 2
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.91 E-value=1.5e-23 Score=200.13 Aligned_cols=238 Identities=11% Similarity=0.042 Sum_probs=170.3
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcc----
Q 015216 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI---- 92 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---- 92 (411)
.++...++++++..+++++.+ |+|+|+|+++..++||++++++|+++.++.||++...+...+......+...
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~ 161 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEY 161 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGG
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCccc
Confidence 455667899999999999987 9999999999999999999999999999999999887766665433222211
Q ss_pred -------eeeEEEEcc------CCCeEEEEEEEEEeeec--------------------CCCeEEEEEEEeecccccccc
Q 015216 93 -------EVNLLNYKK------DGTPFWMLFKMSLVFGK--------------------EDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 93 -------~~e~~~~~~------dG~~~~~~~~~~pi~~~--------------------~~g~~~~~~~~~~DITe~k~~ 139 (411)
.+..++.+. .+...++.+.+...... +.+....++++.++++.+...
T Consensus 162 ~~~~~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~ 241 (361)
T 4f3l_A 162 LKSKNQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIK 241 (361)
T ss_dssp GCGGGEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSE
T ss_pred ccccCceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCccc
Confidence 112222211 12233333322221110 011122333444444333221
Q ss_pred hhcCCccccCCCCcchhHhhhhhhhhhhhhhhhhcccccccccCCCCCCCccccchhcHHHHHHHHHhhhhhhhhhhhcc
Q 015216 140 RNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYS 219 (411)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (411)
+.
T Consensus 242 e~------------------------------------------------------------------------------ 243 (361)
T 4f3l_A 242 EM------------------------------------------------------------------------------ 243 (361)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccCCceeeeeccCCcchhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCch
Q 015216 220 QLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDT 299 (411)
Q Consensus 220 ~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~ 299 (411)
.. + -......++..+. ||.++|+|+++..++||+++|++|+++..++||++.+
T Consensus 244 ----------~~-------i-------~~~~~~f~~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~ 296 (361)
T 4f3l_A 244 ----------CT-------V-------EEPNEEFTSRHSL---EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLE 296 (361)
T ss_dssp ----------CS-------C-------SSSCCEEEEEECT---TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHH
T ss_pred ----------cc-------c-------cCCcceeEEEEcC---CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHH
Confidence 00 0 0011234566677 8999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhcCceEEEEEEEecCCCEEEEEEEeeEEEcC-CCCcccccccCccccccccceeEEEEEeechhhhhHH
Q 015216 300 TVLYQIKESIQTEQACTVRILNYRKDKSSFWNLLHISPIRNA-SGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQD 378 (411)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~ 378 (411)
.+...+.+.+..|.....++++++++|.++|+..++.|++|. +|+ +.+++++.+|||+++..
T Consensus 297 ~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~-----------------~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 297 NLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSR-----------------PEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp HHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCC-----------------EEEEEEEEEECCHHHHH
T ss_pred HHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCC-----------------eeEEEEEEEECChhHhh
Confidence 888888888888877778999999999999999999999998 788 99999999999999865
Q ss_pred H
Q 015216 379 R 379 (411)
Q Consensus 379 e 379 (411)
+
T Consensus 360 ~ 360 (361)
T 4f3l_A 360 A 360 (361)
T ss_dssp H
T ss_pred c
Confidence 4
No 3
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.89 E-value=2.9e-22 Score=192.71 Aligned_cols=107 Identities=15% Similarity=0.047 Sum_probs=92.5
Q ss_pred cccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCc-eEEEEEEEecCCCEE
Q 015216 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-CTVRILNYRKDKSSF 329 (411)
Q Consensus 251 ~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dG~~~ 329 (411)
.+.++..+. ||.++|+|+++..++||+++|++|+++..++||+|.+.+...+.+.+..+.. ...+++++++||.++
T Consensus 278 ~~fi~~~~~---dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAI---DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECT---TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECC---CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 345677777 8999999999999999999999999999999999998888888887766554 567999999999999
Q ss_pred EEEEEeeEEEcC-CCCcccccccCccccccccceeEEEEEeechhhhhH
Q 015216 330 WNLLHISPIRNA-SGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQ 377 (411)
Q Consensus 330 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~ 377 (411)
|++.++.+++|. +|+ +.+++|+.+|||+||.
T Consensus 355 Wv~~~~~~~~~~~~g~-----------------~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKE-----------------VEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEETTTTE-----------------EEEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCC-----------------EEEEEEEEEEcchhhc
Confidence 999999999997 788 8999999999999984
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.85 E-value=4.6e-20 Score=149.58 Aligned_cols=130 Identities=32% Similarity=0.668 Sum_probs=112.2
Q ss_pred HHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEec
Q 015216 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (411)
Q Consensus 245 ~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (411)
.++++++++|+++|..+++++|+|+|++|++++||++++++|+++..+.++.........+...+..+..+..+++.+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 35788999999999844345999999999999999999999999888877777766667777788888889999999999
Q ss_pred CCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHHhh
Q 015216 325 DKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAIG 393 (411)
Q Consensus 325 dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~~ 393 (411)
||+.+|+.++..|+.+.+ +.+++++++|||++|++|++|+.++++|+.++
T Consensus 83 dG~~~~~~~~~~~~~~~~-------------------~~~~~~~~~DITe~k~~e~~l~~~~~~l~~ls 132 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEIED-------------------KTYFVGIQNDITKQKEYEKLLEDSLTEITALS 132 (132)
T ss_dssp TSCEEEEEEEEEEEEETT-------------------EEEEEEEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCeeeeEEEEEeccCCC-------------------eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998754 46889999999999999999999999998763
No 5
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.84 E-value=4.5e-20 Score=151.84 Aligned_cols=138 Identities=15% Similarity=0.209 Sum_probs=120.3
Q ss_pred chhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCC--ccccccCCCCchHHHHHHHHHHhhc
Q 015216 235 GMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESIQTE 312 (411)
Q Consensus 235 ~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~ 312 (411)
.|+..++.|..+++.+++++|.+|. ++.++++|+++++++||+++++.+. .+..++||++.+.+...+...+..+
T Consensus 3 aL~~se~rl~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~ 79 (142)
T 3mr0_A 3 ALSASEERFQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHR 79 (142)
T ss_dssp ------CCHHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCC
Confidence 3455667788899999999999999 7789999999999999999998774 4667889999999988898888888
Q ss_pred CceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHHh
Q 015216 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAI 392 (411)
Q Consensus 313 ~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~ 392 (411)
.++..++++++++|.++|+...+.|++|.+|. +.+++|++.|||++|++|++|++++++|+.+
T Consensus 80 ~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~-----------------~~~~~G~~~DITerk~~E~~L~~~~~~l~~l 142 (142)
T 3mr0_A 80 DTYDVEYRVRTRSGDFRWIQSRGQALWNSAGE-----------------PYRMVGWIMDVTDRKRDEDALRVSREELRRL 142 (142)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEEECCCCCEEEEEEEEEEEECCCCC-----------------EEEEEEEEEcCchHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999 9999999999999999999999999988753
No 6
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.84 E-value=9.2e-20 Score=170.89 Aligned_cols=217 Identities=12% Similarity=0.127 Sum_probs=159.7
Q ss_pred eEEEEc-CCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcc------------eeeE
Q 015216 30 SFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI------------EVNL 96 (411)
Q Consensus 30 ~i~i~d-~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~e~ 96 (411)
.+++++ .+ |+|+|+|+++..++||++++++|+++.++.+|++...+... +..+.++ .+-.
T Consensus 5 F~~vv~~~~---G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~----L~~gl~~~~~~~~~~~~~rsffc 77 (339)
T 3rty_A 5 FCCVISMHD---GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQ----ITTGIPIAESRGSVPKDAKSTFC 77 (339)
T ss_dssp EEEEEETTT---CBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHH----HHTTSCCC----------CCEEE
T ss_pred EEEEEECCC---cEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHH----HhcCCCCCccccCCCCCCceEEE
Confidence 456667 45 99999999999999999999999999999999887764444 4444322 2223
Q ss_pred EEEc----------------cCCCeEEEEEEEEEeeecC---------CCeEEEEEEEeecccccccchhcCCccccCCC
Q 015216 97 LNYK----------------KDGTPFWMLFKMSLVFGKE---------DGRATHFVAVQVPIVSRKHMRNSGMSYSEDGG 151 (411)
Q Consensus 97 ~~~~----------------~dG~~~~~~~~~~pi~~~~---------~g~~~~~~~~~~DITe~k~~~~~~~~~~~~~~ 151 (411)
++++ +++..+|+..+..++.+ + .|.+.++++++.+++.....
T Consensus 78 R~~rr~~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~-e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~------------ 144 (339)
T 3rty_A 78 VMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPE-EARPDNYMVSNGTNMLLVICATPIKSSYKV------------ 144 (339)
T ss_dssp EEEECCC-------------CCEEEEEEEEEEEECCC-C----------CCCEEEEEEEEECCCSCSS------------
T ss_pred EEEeccCCCCcCCcceecccccceeEEEEEEEecccc-ccccccccccCCceEEEEEEcccCCccccc------------
Confidence 3211 12234455555556655 3 56677788888888865442
Q ss_pred CcchhHhhhhhhhhhhhhhhhhcccccccccCCCCCCCccccchhcHHHHHHHHHhhhhhhhhhhhccccCCceeeeecc
Q 015216 152 GSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEIEDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRC 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
..+ + +.
T Consensus 145 ----------------------------------------------p~e----------~---~~--------------- 150 (339)
T 3rty_A 145 ----------------------------------------------PDE----------I---LS--------------- 150 (339)
T ss_dssp ----------------------------------------------TTB----------B---CC---------------
T ss_pred ----------------------------------------------cch----------h---hc---------------
Confidence 000 0 00
Q ss_pred CCcchhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhh
Q 015216 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (411)
Q Consensus 232 ~~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (411)
....+.+...+. ||.++|+|+++..++||+++|++|+++..++||+|.+.....+...+..
T Consensus 151 ----------------~~~~~fi~r~~~---dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~ 211 (339)
T 3rty_A 151 ----------------QKSPKFAIRHTA---TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKK 211 (339)
T ss_dssp ----------------SSCCEEEEEEET---TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHH
T ss_pred ----------------cCCceEEEEECC---CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHc
Confidence 012345677777 8999999999999999999999999999999999998888888888877
Q ss_pred cCc-----eEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 312 EQA-----CTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 312 ~~~-----~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
|.. ...++|++++||+++|++.+.++++|..+.. +.+++++.+.|+..
T Consensus 212 G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s~~----------------~~~II~~h~vi~~p 264 (339)
T 3rty_A 212 GQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRK----------------LEFVVGHHRVFQGP 264 (339)
T ss_dssp TTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTTCS----------------EEEEEEEEEEEECC
T ss_pred CCcccccccceEEEEEccCCCEEEEEEEEEEEECCCCCC----------------eeEEEEEEEECCCC
Confidence 664 3578999999999999999999999976431 67888888877654
No 7
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.83 E-value=8.7e-20 Score=145.32 Aligned_cols=117 Identities=20% Similarity=0.377 Sum_probs=106.7
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeE
Q 015216 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (411)
.++++.+++++|++|+++|.+ |+|+|+|++|++++||++++++|+++..+.++.........+...+..+.++..++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 357889999999999999998 99999999999999999999999998888777666666677778888888899999
Q ss_pred EEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccc
Q 015216 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (411)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k 137 (411)
..+++||..+|+.++..|+++ .+|.+.+++++++|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 999999999999999999999 8999999999999999986
No 8
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.81 E-value=5.3e-19 Score=140.73 Aligned_cols=117 Identities=22% Similarity=0.386 Sum_probs=106.5
Q ss_pred hhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEE
Q 015216 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRI 319 (411)
Q Consensus 240 ~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 319 (411)
.+.+..++++++++|+++|. +|+|+|+|++|++++||++++++|+++..+.++.........+...+..+..+.+++
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 35677889999999999999 889999999999999999999999998888777776666677778888888999999
Q ss_pred EEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhh
Q 015216 320 LNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRN 376 (411)
Q Consensus 320 ~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k 376 (411)
+.+++||+.+|+.++..|+++.+|. +.+++++++|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~~~g~-----------------~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLNEAGE-----------------TIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCC-----------------EEEEEEEeccCcccC
Confidence 9999999999999999999999999 999999999999986
No 9
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.79 E-value=2.9e-19 Score=142.31 Aligned_cols=116 Identities=9% Similarity=0.137 Sum_probs=101.1
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHH-hCCcceeeEE
Q 015216 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLL 97 (411)
Q Consensus 19 ~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~ 97 (411)
+...+++++++.|+++|.+ |+|+|+|+++++++||++++++|+++.++.+|++.......+...+. .+.++..+++
T Consensus 3 ~~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r 79 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFR 79 (121)
T ss_dssp -----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEE
T ss_pred cccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 4457899999999999998 99999999999999999999999999999999998888788877774 5567889999
Q ss_pred EEccCCCeEEEEEEEEEeeecC-CCeEEEEEEEeeccccccc
Q 015216 98 NYKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 98 ~~~~dG~~~~~~~~~~pi~~~~-~g~~~~~~~~~~DITe~k~ 138 (411)
++++||..+|+..+..|+.+ . +|.+.+++++.+|||++|+
T Consensus 80 ~~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 80 FRSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp EECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EEecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 99999999999999999998 6 7899999999999999986
No 10
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.79 E-value=1.6e-18 Score=135.72 Aligned_cols=109 Identities=40% Similarity=0.795 Sum_probs=98.6
Q ss_pred hCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCe
Q 015216 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (411)
Q Consensus 26 ~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (411)
+++++|+++|...++|+|+|+|++|++++||+.+|++|++...+.++.........+++++..+.++..+++.+++||+.
T Consensus 1 ~~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~ 80 (109)
T 1n9l_A 1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTP 80 (109)
T ss_dssp CCSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCE
T ss_pred CCccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCE
Confidence 36889999996433599999999999999999999999998878777776667788889999999999999999999999
Q ss_pred EEEEEEEEEeeecCCCeEEEEEEEeecccc
Q 015216 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (411)
Q Consensus 106 ~~~~~~~~pi~~~~~g~~~~~~~~~~DITe 135 (411)
+|+.+++.|+++ ++|++.+++++.+|||+
T Consensus 81 ~~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 81 FWNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 999999999999 89999999999999996
No 11
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.79 E-value=2.8e-18 Score=155.87 Aligned_cols=140 Identities=28% Similarity=0.461 Sum_probs=117.9
Q ss_pred hhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEE
Q 015216 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (411)
Q Consensus 238 ~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
..++.+..++++++++|+++|..+.+|+|+|+|++|++++||++++++|+++..+.++++.......+...+..+..+..
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLV 139 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEE
Confidence 34456778899999999999995545689999999999999999999999999999898888888888889999999999
Q ss_pred EEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh--hHHHHHHHHHHHHHHHhhh
Q 015216 318 RILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR--NQDRHGLSLEMRQLSAIGA 394 (411)
Q Consensus 318 e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~--k~~e~~L~~~~~~l~~~~~ 394 (411)
+++.+++||..+|+.++..|+++.+|. +.+++++++|||++ ++.+.++....+.+..+..
T Consensus 140 e~~~~~~dG~~~~~~~~~~pi~d~~g~-----------------~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~ 201 (258)
T 3p7n_A 140 EILNYKKDGTPFRNAVLVAPIYDDDDE-----------------LLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSP 201 (258)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSC-----------------SEEEEEEEEEC-------CHHHHHHHHHHHTTSCH
T ss_pred EEEEEcCCCCEEEEeeEEEEEEcCCCC-----------------EEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCH
Confidence 999999999999999999999999999 99999999999999 6666666666666665443
No 12
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.79 E-value=2.3e-18 Score=134.78 Aligned_cols=108 Identities=44% Similarity=0.942 Sum_probs=98.9
Q ss_pred ccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEE
Q 015216 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (411)
Q Consensus 250 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (411)
++++|+++|...++++|+|+|++|++++||+.+|++|+++..+.++.........+.+.+..+..+.++++.+++||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999975447999999999999999999999999988888887777777888888999999999999999999999
Q ss_pred EEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhh
Q 015216 330 WNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGC 374 (411)
Q Consensus 330 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~ 374 (411)
|+.+++.|++|++|. +.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d~~G~-----------------~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKTPDGR-----------------VSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEECTTSC-----------------EEEEEEEEEECCC
T ss_pred EEEEEEEEEECCCCC-----------------EEEEEEEEEeCCC
Confidence 999999999999999 9999999999995
No 13
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.79 E-value=1.4e-18 Score=147.82 Aligned_cols=125 Identities=26% Similarity=0.414 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
+..++++.+++++|++|+++|.+.+||+|+|+|+++++++||++++++|+++..+.++++.......+...+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQV 83 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEE
Confidence 34567889999999999999986455999999999999999999999999988888888888888888899999999999
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccch
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~ 140 (411)
++...++||..+|+.++..|+++ .+|.+.+++++++|||++|+++
T Consensus 84 e~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e 128 (176)
T 4hia_A 84 VLRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSE 128 (176)
T ss_dssp EEEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGH
T ss_pred EEEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHH
Confidence 99999999999999999999999 8999999999999999999983
No 14
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.79 E-value=3e-18 Score=138.78 Aligned_cols=116 Identities=37% Similarity=0.686 Sum_probs=99.6
Q ss_pred HHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEc
Q 015216 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (411)
Q Consensus 21 ~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (411)
+.++++++++|+++|.++++|+|+|+|++|++++||++++++|+++..+.+++........+...+..+.++..+++.++
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 81 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYK 81 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 35799999999999987223599999999999999999999999987777777666666777888888888999999999
Q ss_pred cCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
+||..+|+.++..|+.+ .+ +.+++++++|||++|++
T Consensus 82 kdG~~~~~~~~~~~~~~-~~--~~~~~~~~~DITe~k~~ 117 (132)
T 2pr5_A 82 KDGTMFWNELNIDPMEI-ED--KTYFVGIQNDITKQKEY 117 (132)
T ss_dssp TTSCEEEEEEEEEEEEE-TT--EEEEEEEEEECHHHHHH
T ss_pred cCCCeeeeEEEEEeccC-CC--eeEEEEEEEeCcHHHHH
Confidence 99999999999999998 44 88999999999999997
No 15
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.78 E-value=1.3e-18 Score=138.54 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=100.8
Q ss_pred HHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHh-hcCceEEEEEEEe
Q 015216 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ-TEQACTVRILNYR 323 (411)
Q Consensus 245 ~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ 323 (411)
.+++++++.+++.|. +|+++|+|+++++++||++++++|+++..++||++.......+.+.+. .+..+..++++++
T Consensus 6 ll~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 82 (121)
T 3f1p_B 6 LNVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS 82 (121)
T ss_dssp --CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEEC
T ss_pred ceecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence 457889999999999 889999999999999999999999999999999999888888887774 5557889999999
Q ss_pred cCCCEEEEEEEeeEEEcC-CCCcccccccCccccccccceeEEEEEeechhhhhH
Q 015216 324 KDKSSFWNLLHISPIRNA-SGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQ 377 (411)
Q Consensus 324 ~dG~~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~ 377 (411)
+||+++|+.++..|+.|. +|. +.+++++.+|||++|+
T Consensus 83 ~dG~~~w~~~~~~~~~~~~~g~-----------------~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 83 KNQEWLWMRTSSFTFQNPYSDE-----------------IEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TTSCEEEEEEEEEEECCTTCCC-----------------CCEEEEEEEECCCC--
T ss_pred cCCCEEEEEEEEEEEECCCCCc-----------------eeEEEEEeEEcccccC
Confidence 999999999999999987 788 8899999999999986
No 16
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.78 E-value=4.3e-18 Score=144.74 Aligned_cols=127 Identities=27% Similarity=0.512 Sum_probs=114.8
Q ss_pred hHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEE
Q 015216 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (411)
Q Consensus 241 ~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (411)
..+..++++++++|+++|...++|+|+++|++|++++||++++++|+++..+.++++.......+...+..+..+..+++
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 35677889999999999993222899999999999999999999999999898888888888888888999999999999
Q ss_pred EEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHH
Q 015216 321 NYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSL 384 (411)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~ 384 (411)
..+++|+.+|+.++..|+.+.+|. +.+++++++|||++|++|++++.
T Consensus 87 ~~~~dG~~~~~~~~~~pi~~~~g~-----------------~~~~~~~~~DITe~k~~e~~~~~ 133 (176)
T 4hia_A 87 NYRANDEPFDNLLFLHPVGGRPDA-----------------PDYFLGSQFELGRSGNSEEAAAA 133 (176)
T ss_dssp EECTTCCEEEEEEEEEEESSBTTB-----------------CSEEEEEEEEESSSGGGHHHHHH
T ss_pred EEcCCCCEEEEEEEEEEeeCCCCC-----------------eEEEEEEEEECcHhhHHHHHHHH
Confidence 999999999999999999999999 89999999999999999988443
No 17
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.77 E-value=5.4e-18 Score=139.25 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccC--CCCCCCCCccchhHHHHHHHHHHhCCcc
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
...++|+.++++++.++|.+|.. +.++++|+++.+++||+++++.+. .+..+++|++...+...+...+..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 45567889999999999999998 889999999999999999998763 4667889999988888899999999999
Q ss_pred eeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
..++++.++||..+|+..++.|+++ .+|.+.+++|+++|||++|++
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~ 128 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRD 128 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHH
Confidence 9999999999999999999999999 899999999999999999998
No 18
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.77 E-value=1.9e-18 Score=136.51 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCeE
Q 015216 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (411)
Q Consensus 27 ~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (411)
+++.|+++|.+ |+++|+|+++++++||++++++|+++..+.+|++.......+...+..+.++..+++++++||..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 46788899997 999999999999999999999999999999999988888888888888888888999999999999
Q ss_pred EEEEEEEEeeecC-CCeEEEEEEEeeccccccc
Q 015216 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 107 ~~~~~~~pi~~~~-~g~~~~~~~~~~DITe~k~ 138 (411)
|+..+..|+.+ . +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999999 6 8999999999999999987
No 19
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.77 E-value=6.2e-18 Score=135.30 Aligned_cols=125 Identities=39% Similarity=0.713 Sum_probs=105.1
Q ss_pred HhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCC
Q 015216 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDK 326 (411)
Q Consensus 247 l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 326 (411)
+++++++++++|..+++++++++|+++++++||+.++++|+++..+.++.........+...+..+..+..+++..+++|
T Consensus 3 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 82 (128)
T 3t50_A 3 SEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSG 82 (128)
T ss_dssp CCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred cccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCC
Confidence 57789999999985446699999999999999999999999998888888888888888888888899999999999999
Q ss_pred CEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHH
Q 015216 327 SSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQ 388 (411)
Q Consensus 327 ~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~ 388 (411)
..+|+.++..|+.+.+|. +.+++++++|||++|++|++.+..+++
T Consensus 83 ~~~~~~~~~~~i~~~~g~-----------------~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 83 EAFWNRLHISPVHNANGR-----------------LQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp CEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECHHHHC-----------
T ss_pred CEEEEEEEEEEEECCCCC-----------------EEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 999999999999999999 999999999999999999988876543
No 20
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.76 E-value=1.3e-17 Score=139.75 Aligned_cols=134 Identities=34% Similarity=0.603 Sum_probs=116.3
Q ss_pred CCcchhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhh
Q 015216 232 SLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (411)
Q Consensus 232 ~~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (411)
....+......+..++++++++++++|...++++|+++|++|++++||++++++|+++..+.++++.......+...+..
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (166)
T 3ue6_A 26 ANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITK 105 (166)
T ss_dssp -----CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhc
Confidence 34445556667889999999999999984335799999999999999999999999998888888888888888888888
Q ss_pred cCceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHH
Q 015216 312 EQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGL 382 (411)
Q Consensus 312 ~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L 382 (411)
+..+..++...+++|..+|+.++..|+.+.+|. +.+++++++|||++|+++...
T Consensus 106 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~-----------------~~~~~~~~~DITe~k~~~~~~ 159 (166)
T 3ue6_A 106 GVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGN-----------------IVNYVGVQSKVSEDYAKLLVN 159 (166)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSC-----------------EEEEEEECCBCCHHHHHHHHH
T ss_pred CCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCC-----------------EEEEEEEEEechHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999877653
No 21
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.76 E-value=3.8e-18 Score=143.07 Aligned_cols=124 Identities=39% Similarity=0.648 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
....++..+++++|++++++|...++|+|+++|+++++++||++++++|+++..+.+++........+...+..+.++..
T Consensus 32 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (166)
T 3ue6_A 32 DPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSV 111 (166)
T ss_dssp CCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEE
Confidence 34567889999999999999982123999999999999999999999999988888888877778888888999999999
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
++...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|.+
T Consensus 112 e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 112 CLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred EEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 99999999999999999999999 899999999999999999986
No 22
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.76 E-value=1e-16 Score=148.66 Aligned_cols=119 Identities=8% Similarity=0.044 Sum_probs=96.9
Q ss_pred cEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCc---eEEEEEEEecCCCEE
Q 015216 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA---CTVRILNYRKDKSSF 329 (411)
Q Consensus 253 ~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dG~~~ 329 (411)
.+...+. ||.++|+|+++..++||.++|++|+++..++||+|.+.......+.++.+.. ...++|++++||.++
T Consensus 176 Fitrh~~---dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~v 252 (317)
T 4dj3_A 176 FTTTHTP---GCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYV 252 (317)
T ss_dssp EEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEE
T ss_pred eEEEecC---CCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEE
Confidence 3455566 8999999999999999999999999999999999999888888888876654 357899999999999
Q ss_pred EEEEEeeEEEcCC-CCcccccccCccccccccceeEEEEEee--------c-----hhhhhHHHHHHHHHHHHHHH
Q 015216 330 WNLLHISPIRNAS-GKQLASTFNSTSFTICPVEIAYFAAVHT--------E-----EGCRNQDRHGLSLEMRQLSA 391 (411)
Q Consensus 330 ~~~~~~~~i~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~~~~--------D-----IT~~k~~e~~L~~~~~~l~~ 391 (411)
|++...++++|.. ++ +.+++++.+ | +++++..+.++++..+++..
T Consensus 253 wvet~~~~~~np~s~~-----------------~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~ 311 (317)
T 4dj3_A 253 ILDSSWSSFVNPWSRK-----------------VSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHK 311 (317)
T ss_dssp EEEEEEEEEECSSSCC-----------------EEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCc-----------------ccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHH
Confidence 9999999999874 45 677888877 4 34556666666666555543
No 23
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.75 E-value=2.8e-18 Score=135.63 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=100.2
Q ss_pred ccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEE
Q 015216 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (411)
Q Consensus 250 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (411)
.++.+++.|. +|+++|+|+++++++||++++++|+++..++||++.......+.+.+..+..+..++++++++|+.+
T Consensus 8 ~~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 4678889999 8899999999999999999999999999999999998888888888888888888999999999999
Q ss_pred EEEEEeeEEEcC-CCCcccccccCccccccccceeEEEEEeechhhhhH
Q 015216 330 WNLLHISPIRNA-SGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQ 377 (411)
Q Consensus 330 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~ 377 (411)
|+.+++.|+.|+ +|. +.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d~~~g~-----------------~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYNPRNLQ-----------------PQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEETTTTE-----------------EEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEECCCCCC-----------------ceEEEEEeeecccccc
Confidence 999999999997 788 8899999999999985
No 24
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.74 E-value=1.4e-17 Score=133.17 Aligned_cols=118 Identities=36% Similarity=0.672 Sum_probs=105.0
Q ss_pred HHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccC
Q 015216 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKD 102 (411)
Q Consensus 23 l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 102 (411)
+++++|++++++|...++|+|+++|+++++++||+.++++|+++..+.+++........+...+..+.++..+++..+++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 57899999999999211299999999999999999999999998888888877777888888899999999999999999
Q ss_pred CCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccchh
Q 015216 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (411)
Q Consensus 103 G~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~~ 141 (411)
|..+|+.++..|+.+ .+|.+.+++++++|||++|++++
T Consensus 82 g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~ 119 (128)
T 3t50_A 82 GEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRG 119 (128)
T ss_dssp CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC---
T ss_pred CCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhh
Confidence 999999999999999 89999999999999999999844
No 25
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.74 E-value=3.8e-17 Score=127.43 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=100.9
Q ss_pred HHhhCCCeEEEEcC---CCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEE
Q 015216 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (411)
Q Consensus 23 l~e~~~~~i~i~d~---~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (411)
.++++|++++++|. + |+|+++|+++++++||++++++|+++..+.++.........+...+..+.++..+++..
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 57899999999999 7 99999999999999999999999998888888877777788888899999999999999
Q ss_pred ccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccc
Q 015216 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (411)
Q Consensus 100 ~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k 137 (411)
+++|..+|+.++..|+.+ .+|.+.+++++++|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999999 8999999999999999975
No 26
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.74 E-value=3.5e-17 Score=148.54 Aligned_cols=123 Identities=29% Similarity=0.592 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
...++++.+++++|++|+++|....+|+|+|+|++|++++||++++++|+++.++.++++.......+...+..+.++..
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLV 139 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEE
Confidence 34567999999999999999992112899999999999999999999999998888888888888888999999999999
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
+++.+++||..+|+.++..|+++ .+|.+.+++++++|||++|.
T Consensus 140 e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~ 182 (258)
T 3p7n_A 140 EILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQP 182 (258)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC-----
T ss_pred EEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhh
Confidence 99999999999999999999999 89999999999999999954
No 27
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.74 E-value=3.9e-17 Score=136.39 Aligned_cols=135 Identities=27% Similarity=0.464 Sum_probs=118.6
Q ss_pred hhhHHHHHHhcccccEEEEcCCCCCC---CEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCce
Q 015216 239 ISSSLYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (411)
Q Consensus 239 ~~~~l~~~l~~~~~~i~~~d~~~~d~---~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (411)
..+.+..++++++++++++|. ++ +++++|+++++++|++.++++|+++..+.++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 345678889999999999999 88 999999999999999999999999988888887777778888888889999
Q ss_pred EEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHHhh
Q 015216 316 TVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAIG 393 (411)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~~ 393 (411)
..++...+++|..+|+.++..|+.+.+|. +.+++++++|||++|+++++|+.++++|+...
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~~~g~-----------------~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~~~ 160 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKSDFDQ-----------------RTYFIGIQKDVSRQVELERELAELRARPKPDE 160 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEECSSSS-----------------CEEEEEEEEECHHHHHHHHHHHHHTC------
T ss_pred cceEEEECCCCCEEEEEEEEEEeecCCCC-----------------EEEEEEEEEeCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 89999999999999999999998887777543
No 28
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.73 E-value=1.6e-17 Score=131.68 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhcc--CCCCCCCCCccchhHHHHHHHHHHhCCcc
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
...++++.++++++.++|++|.+ +.++++|+++.+++||+++++.| ..+..+.+|++.......+...+..+.++
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 45567889999999999999998 99999999999999999999998 44556677888888888888888888889
Q ss_pred eeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
..++++.+++|..+|+.++..|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 9999999999999999999999999 89999999999999999985
No 29
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.72 E-value=1.9e-17 Score=131.43 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=94.1
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccc-hhHHHHHHHHHHhCCcceeeEE
Q 015216 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (411)
Q Consensus 19 ~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (411)
.++.+++++|++|++ +.+ |+|+++|+++++++||++++++|+++..+++++.. ......+...+..+..+..+++
T Consensus 4 ~~~~~~~~~~~~i~~-~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-SRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEEE-EET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEEE-ecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 367899999999964 666 99999999999999999999999998877765433 3445566677777888889999
Q ss_pred EEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 98 ~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
+.++||..+|+.++..|+ + .+|...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~-~-~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRAL-D-RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEES-S-TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEEC-C-CCCCceeEEEEEEcccHhhcc
Confidence 999999999999999999 4 467677899999999999985
No 30
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.72 E-value=5.6e-17 Score=128.45 Aligned_cols=121 Identities=13% Similarity=0.006 Sum_probs=96.7
Q ss_pred hhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccC--CccccccCCCCchHHHHHHHHHHhhcCc
Q 015216 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (411)
Q Consensus 237 ~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (411)
+..++.+..+++.++++++++|. ++.++++|+++++++||+++++.| ..+..+++|++.......+...+..+..
T Consensus 3 ~~~~~~l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 79 (125)
T 3nja_A 3 AMAEKLLHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRP 79 (125)
T ss_dssp --------------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCC
Confidence 34556678889999999999999 889999999999999999999999 4566778899988888888888888888
Q ss_pred eEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhH
Q 015216 315 CTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQ 377 (411)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~ 377 (411)
+..++++.+++|..+|+.+++.|+.+.+|. +.+++++++|||++|+
T Consensus 80 ~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~-----------------~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 80 FDVEYRIVRPDGQVRELLERNHIQRQASGQ-----------------VDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCEEEEEEeeEEEECCCCC-----------------EEEEEEEEEecccccC
Confidence 999999999999999999999999999999 8999999999999985
No 31
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.72 E-value=1.2e-16 Score=125.31 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
...++++.+++++|++++++|.+ |+|+++|+++.+++|++.++++|+++..+.+++........+...+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 4 DILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp CHHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 34567889999999999999997 999999999999999999999999988666666666666778888888988999
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
+.....++|..+|+.++..|+.+ .+|.+.|++++++|||++|+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred eEEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 99999999999999999999999 89999999999999999986
No 32
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.71 E-value=3.8e-16 Score=145.03 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=86.8
Q ss_pred cEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhc-Cce-EEEEEEEecCCCEEE
Q 015216 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE-QAC-TVRILNYRKDKSSFW 330 (411)
Q Consensus 253 ~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~dG~~~~ 330 (411)
.+...+. ||.++|+|+++..++||.++|++|+++..++||+|.+.+.....+.++.+ ... ..++|++++||.++|
T Consensus 178 Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 254 (320)
T 4dj2_A 178 FTTRHTP---SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVT 254 (320)
T ss_dssp EEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEE
T ss_pred EEEEecC---CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEE
Confidence 3455566 89999999999999999999999999999999999988887777777744 445 368999999999999
Q ss_pred EEEEeeEEEcC-CCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 331 NLLHISPIRNA-SGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 331 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
++...+++.|. .++ +.+++++.+-++..
T Consensus 255 vet~~~~~~np~s~~-----------------~e~II~~h~v~~gp 283 (320)
T 4dj2_A 255 MDTSWAGFVHPWSRK-----------------VAFVLGRHKVRTAP 283 (320)
T ss_dssp EECEEEEEECTTTCS-----------------EEEEEEEEEESSCC
T ss_pred EEEEEEEEECCCCCC-----------------ccEEEEEEEEccCC
Confidence 99999999986 455 77888888777654
No 33
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.71 E-value=1.5e-16 Score=141.58 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=107.4
Q ss_pred EEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEEEEEE
Q 015216 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNLL 333 (411)
Q Consensus 254 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 333 (411)
|+++|. +|+|+++|++|++++||++++++|+++..+.++.........+.+.+..+..+.++++.+++||+.+|+.+
T Consensus 2 i~i~D~---~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDL---QGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEET---TCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECC---CCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 678898 88999999999999999999999999988877777777777888888899999999999999999999999
Q ss_pred EeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHH
Q 015216 334 HISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSA 391 (411)
Q Consensus 334 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~ 391 (411)
+..|++|.+|. +.+++++.+|||++|++|++|+.....++.
T Consensus 79 ~~~p~~d~~g~-----------------~~~~~~~~~DIT~~k~~e~~l~~~~~~~~~ 119 (227)
T 3ewk_A 79 TIVPLMDNAGK-----------------PRQYISIRRDITAQKEAEAQLARLKQAMDA 119 (227)
T ss_dssp EEEEEECSSSC-----------------EEEEEEEEEECTTTTHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCC-----------------EEEEEEEEEehhhHHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999999999999999876665553
No 34
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.71 E-value=1.7e-16 Score=132.13 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=109.5
Q ss_pred hhHHHHHHhcccccEEEEc-CCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEE
Q 015216 240 SSSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (411)
Q Consensus 240 ~~~l~~~l~~~~~~i~~~d-~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (411)
.+.|..+++++|++++++| . +++++++|+++++++|++ +++|+++..++++.........+.+.+..+.+...+
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGS 90 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccccc
Confidence 4568889999999999999 8 889999999999999999 899999988887776666777778888788875543
Q ss_pred -EEE--Ee-cC-CCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHH
Q 015216 319 -ILN--YR-KD-KSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSA 391 (411)
Q Consensus 319 -~~~--~~-~d-G~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~ 391 (411)
... .+ .+ |..+|+.++..|+++.+|. +.+++++++|||++|++|++|+...++++.
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~-----------------~~g~~~~~~DITe~k~~e~~l~~~~~~l~~ 151 (158)
T 3k3c_A 91 EWRLQTDYDGSGVEERYFDFVVTPRRRADGS-----------------IEGVQLIVDDVTSRVRARQAAEARVEELSE 151 (158)
T ss_dssp EEEEEEESSSSCEEEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccCCCCcceEEEEEEEEEeECCCCC-----------------EEEEEEEEEehhHHHHHHHHHHHHHHHHHH
Confidence 322 22 22 7789999999999999999 999999999999999999999877766654
No 35
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.71 E-value=2.4e-16 Score=122.75 Aligned_cols=114 Identities=41% Similarity=0.843 Sum_probs=101.8
Q ss_pred HHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecC
Q 015216 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (411)
Q Consensus 246 ~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 325 (411)
++++++++++++|...++++++++|+++++++||++++++|+++..+.++.........+.+.+..+..+..+++..+++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 46789999999998444579999999999999999999999999888888888888888888888899999999999999
Q ss_pred CCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhh
Q 015216 326 KSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRN 376 (411)
Q Consensus 326 G~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k 376 (411)
|..+|+.++..|+.+.+|. +.+++++++|||+++
T Consensus 82 g~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~DITer~ 115 (115)
T 4eet_B 82 GKKFWNLLHLQPVRDQKGE-----------------LQYFIGVQLDGSDHV 115 (115)
T ss_dssp CCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECSCCC
T ss_pred CCEEEEEEEEEEEECCCCC-----------------EEEEEEEEEeecccC
Confidence 9999999999999999999 899999999999874
No 36
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.71 E-value=5e-17 Score=127.97 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=98.4
Q ss_pred ccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCc-cccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCE
Q 015216 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSS 328 (411)
Q Consensus 250 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 328 (411)
+++++|.+|.. +++++|+|+++++++||++++++|.. +..++||++.+.+...+.+.+..+..+..+++++++||+.
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 46789999953 67899999999999999999999842 4567899999888888888888888899999999999999
Q ss_pred EEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHH
Q 015216 329 FWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRH 380 (411)
Q Consensus 329 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~ 380 (411)
+|+..++.|++|++|+ +.+++|+..|||++|.+|+
T Consensus 80 ~w~~~~~~~~~d~~G~-----------------~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 80 VWIRDVVHVVRDDSGE-----------------VEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEEEEEEECTTSC-----------------EEEEEEEEEECGGGGC---
T ss_pred EEEEEEEEEEECCCCC-----------------EEEEEEEEeccCccccccc
Confidence 9999999999999999 9999999999999998875
No 37
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.71 E-value=1.3e-16 Score=128.62 Aligned_cols=124 Identities=17% Similarity=0.239 Sum_probs=99.2
Q ss_pred ccchHHHhhhhHHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHH
Q 015216 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (411)
Q Consensus 4 q~~~~e~~~~~~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~ 83 (411)
++...|+++. +...+++.+++++|++|+++|.+ |+|+++|+++++++||++++++|+++..+.+++........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 4556777776 66678999999999999999998 9999999999999999999999999888877665444344444
Q ss_pred HHHHhCCc----ceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
.....+.. ...++..+++||+.+|+.+++.|+.+ . +. .+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~-~~-~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G-GE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEECc
Confidence 44444443 23467788999999999999999987 3 33 35889999998
No 38
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.70 E-value=5.7e-17 Score=127.64 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCC-CCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCe
Q 015216 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTP 105 (411)
Q Consensus 27 ~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (411)
+++++|.+|.. +++++|+|+++.+++||+++++.|.. +..+.+|++.......+...+..+.++..+++++++||..
T Consensus 2 a~~giw~~d~~--~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQ--TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHY 79 (115)
T ss_dssp -CCEEEEEETT--TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCE
T ss_pred cceEEEEEEcC--CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCE
Confidence 57899999954 48999999999999999999999832 3457889988888888889999888899999999999999
Q ss_pred EEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 106 ~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
+|+..++.|+++ ++|++.+++|+..|||++|.+
T Consensus 80 ~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~ 112 (115)
T 3h9w_A 80 VWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHH 112 (115)
T ss_dssp EEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC-
T ss_pred EEEEEEEEEEEC-CCCCEEEEEEEEeccCccccc
Confidence 999999999999 899999999999999999987
No 39
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.70 E-value=6.4e-16 Score=142.90 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=86.2
Q ss_pred cEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCc-eE-EEEEEEecCCCEEE
Q 015216 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA-CT-VRILNYRKDKSSFW 330 (411)
Q Consensus 253 ~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dG~~~~ 330 (411)
.+...+. ||.++|+|+++..++||.++|++|+++..++||+|.........+.++.++. .. .++|++++||.++|
T Consensus 167 Fitrh~~---dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTP---NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECT---TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecC---CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 3455566 8999999999999999999999999999999999998888878888775544 55 58999999999999
Q ss_pred EEEEeeEEEcC-CCCcccccccCccccccccceeEEEEEeechhh
Q 015216 331 NLLHISPIRNA-SGKQLASTFNSTSFTICPVEIAYFAAVHTEEGC 374 (411)
Q Consensus 331 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~ 374 (411)
++...+++.|. +++ +.+++++.+-++.
T Consensus 244 vet~~~~~~np~s~~-----------------~e~ii~~h~v~~g 271 (309)
T 3gdi_A 244 LDTSWSSFINPWSRK-----------------ISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEECTTTCC-----------------EEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCc-----------------ccEEEEEEEEccC
Confidence 99999999986 455 7788888776654
No 40
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.70 E-value=1.1e-15 Score=123.68 Aligned_cols=139 Identities=36% Similarity=0.740 Sum_probs=116.5
Q ss_pred HHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEec
Q 015216 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (411)
Q Consensus 245 ~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (411)
.++++++++++++|...+++.++++|+++++++|++.++++|+++..+.++.+.......+...+..+..+..++...++
T Consensus 6 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (146)
T 2v0u_A 6 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTK 85 (146)
T ss_dssp CTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred HHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEec
Confidence 35788999999999732246999999999999999999999999988888888888788888888888889999999999
Q ss_pred CCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHH-hhhHHHHHhh
Q 015216 325 DKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSA-IGAIKVAVRS 401 (411)
Q Consensus 325 dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~-~~~~~~~~~~ 401 (411)
+|..+|+.++..|+.+.+|. +.+++++++|||++|+ ++++.++.++++. +..+..++++
T Consensus 86 ~g~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 145 (146)
T 2v0u_A 86 SGKKFWNLFHLQPMRDQKGD-----------------VQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENIDEAAKE 145 (146)
T ss_dssp TCCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEEEEEEeECCCCC-----------------EEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccHhhHhc
Confidence 99999999999999999999 8999999999999999 4444445555444 4555555544
No 41
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.69 E-value=5.2e-16 Score=146.20 Aligned_cols=126 Identities=39% Similarity=0.775 Sum_probs=113.5
Q ss_pred HHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecC
Q 015216 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (411)
Q Consensus 246 ~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 325 (411)
++++++++++++|...++|+|+++|++|++++||++++++|+++..+.++++.......+.+.+..+..+..+++.+++|
T Consensus 16 ~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 95 (332)
T 2wkq_A 16 TLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKS 95 (332)
T ss_dssp CGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred HhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCC
Confidence 46789999999998555679999999999999999999999999999888888888888888899999999999999999
Q ss_pred CCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHH
Q 015216 326 KSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQ 388 (411)
Q Consensus 326 G~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~ 388 (411)
|+.+|+.++..|+++.+|. +.+++++++|||++|+.+++++.....
T Consensus 96 G~~~~~~~~~~pi~d~~g~-----------------~~~~v~~~~DITe~k~~e~~~~~~~~~ 141 (332)
T 2wkq_A 96 GKKFWNLFHLQPMRDQKGD-----------------VQYFIGVQLDGTEHVRDAAEREGVMLI 141 (332)
T ss_dssp CCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEEEeEcCCCC-----------------EEEEEEEeccCchhhhhhhhccchhhH
Confidence 9999999999999999999 999999999999999988877544333
No 42
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.69 E-value=9e-17 Score=127.49 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=92.6
Q ss_pred HHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCc-hHHHHHHHHHHhhcCceEEEEEE
Q 015216 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQIKESIQTEQACTVRILN 321 (411)
Q Consensus 243 l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~ 321 (411)
++.+++++|+++++ +. +++|+++|++|++++||++++++|+++..+++++.. ......+...+..+..+..++++
T Consensus 5 ~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 67788999999964 66 789999999999999999999999998777654332 34455566667778889999999
Q ss_pred EecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHH
Q 015216 322 YRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQD 378 (411)
Q Consensus 322 ~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~ 378 (411)
+++||+.+|+.++..|+ +.+|. ..+++++++|||++|++
T Consensus 81 ~~~dG~~~~~~~~~~~~-~~~~~-----------------~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL-DRTAP-----------------LAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ECTTSCEEEEEEEEEES-STTST-----------------TSSEEEEEEESCC----
T ss_pred EeCCCCEEEEEEEEEEC-CCCCC-----------------ceeEEEEEEcccHhhcc
Confidence 99999999999999999 55666 67889999999999975
No 43
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.69 E-value=5.9e-16 Score=122.27 Aligned_cols=121 Identities=38% Similarity=0.743 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEc---CCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc
Q 015216 15 RYTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d---~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
+..+.++.++++++++++++| .+ |+|+++|+++.+++|++.++++|+++..+.++.........+...+..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS 79 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCc
Confidence 345668899999999999999 76 999999999999999999999999988888887777777778888888888
Q ss_pred ceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
+..++...+++|..+|+.++..|+.+ .+|.+.+++++++|||+++++
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 126 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEG 126 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC--
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHh
Confidence 88888889999999999999999999 899999999999999999986
No 44
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.69 E-value=2e-16 Score=125.38 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=80.4
Q ss_pred ccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCc----eEEEEEEEecC
Q 015216 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA----CTVRILNYRKD 325 (411)
Q Consensus 250 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~d 325 (411)
++++|+++|. +|+|+++|+++++++||++++++|+++..+.++.........+......+.. ...++..+++|
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 5789999999 8899999999999999999999999988877665544333333344433332 34567788999
Q ss_pred CCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHH
Q 015216 326 KSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSL 384 (411)
Q Consensus 326 G~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~ 384 (411)
|+.+|+.+++.|+.+. + ..+++++++|||++|++|++|+.
T Consensus 79 G~~~~~~~~~~~~~~~-~------------------~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQSG-G------------------EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp SCEEEEEEEEEEEEET-T------------------EEEEEEEEEECC-----------
T ss_pred CCEEEEEEEEEEEEEC-C------------------eEEEEEEEEEcHHHHHHHHHHHh
Confidence 9999999999999863 3 34689999999999999988764
No 45
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.67 E-value=6.2e-16 Score=128.98 Aligned_cols=120 Identities=24% Similarity=0.461 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCc---cEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcc
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg---~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
..++++.++++++++++++|.+ | +|+++|+++.+++||+.++++|+++..+.++.........+...+..+..+
T Consensus 23 ~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (162)
T 3sw1_A 23 NAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPC 99 (162)
T ss_dssp CHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCC
Confidence 4578899999999999999998 8 999999999999999999999999888887777777777888888899999
Q ss_pred eeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
..++...+++|..+|+.++..|+.+ .+|.+.+++++++|||++|++
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~ 145 (162)
T 3sw1_A 100 REVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVEL 145 (162)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHH
T ss_pred cceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHH
Confidence 9999999999999999999999999 899999999999999999997
No 46
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.67 E-value=1.2e-15 Score=120.47 Aligned_cols=123 Identities=37% Similarity=0.756 Sum_probs=105.9
Q ss_pred hhhHHHHHHhcccccEEEEc---CCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCce
Q 015216 239 ISSSLYISLGRIKQSFVLID---PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (411)
Q Consensus 239 ~~~~l~~~l~~~~~~i~~~d---~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (411)
.+..+..++++++++++++| . ++.++++|+++++++|++.++++|+++..+.++.........+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQP---HCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTST---TCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCC---CCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 34457788999999999999 7 88999999999999999999999999988888887777777788888888888
Q ss_pred EEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHH
Q 015216 316 TVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHG 381 (411)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~ 381 (411)
..++...+++|..+|+.+...|+.+.+|. +.+++++++|||++|++|++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKDDQGN-----------------TIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECCTTC-----
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEECCCCC-----------------eeEEEEEEecchHHHHhhcc
Confidence 88888899999999999999999999999 89999999999999987653
No 47
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.67 E-value=1.1e-15 Score=120.99 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
...++++.++++++++|+++|.+ |+|+++|+++++++||+++|++|+++..+.++.... ........+..+.++..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEE
Confidence 45678999999999999999998 999999999999999999999999877665433322 22334455667777888
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
+.+.+++||+.+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECT---TSC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEec---CCe---EEEEEEeCC
Confidence 9999999999999999999984 455 678889998
No 48
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.67 E-value=8.1e-16 Score=121.80 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=81.6
Q ss_pred hCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc----ceeeEEEEcc
Q 015216 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (411)
Q Consensus 26 ~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (411)
+++++|+++|.+ |+|+++|+++++++||++++++|+++..+.++.........+......+.. ...++..+++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 368999999998 999999999999999999999999988777665544433444444444443 3356778899
Q ss_pred CCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccchh
Q 015216 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (411)
Q Consensus 102 dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~~ 141 (411)
||+.+|+.++.+|+.+ . +. .+++++++|||++|++++
T Consensus 78 dG~~~~~~~~~~~~~~-~-~~-~~~~~~~~DITerk~~e~ 114 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS-G-GE-PYFTGFVRDLTEHQQTQA 114 (119)
T ss_dssp TSCEEEEEEEEEEEEE-T-TE-EEEEEEEEECC-------
T ss_pred CCCEEEEEEEEEEEEE-C-Ce-EEEEEEEEEcHHHHHHHH
Confidence 9999999999999987 3 33 468999999999999844
No 49
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.67 E-value=2.3e-16 Score=130.96 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
+....++.+++++++||+++|.+ |+|+++|+++++++|+++++++|+++.+++++ ........+..++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 45567899999999999999998 99999999999999999999999998888876 555556778888888875322
Q ss_pred ---------eEEE---EccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 95 ---------NLLN---YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 95 ---------e~~~---~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
++.. ..++|..+|..+++.|+.+ ++|++.|++.+++|||+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 1111 2356778899999999999 999999999999999999876
No 50
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.66 E-value=1.8e-15 Score=118.56 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=105.5
Q ss_pred hhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEE
Q 015216 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (411)
Q Consensus 239 ~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (411)
..+.+..++++++++++++|. ++.++++|+++++++|++.++++|+++..+.+++........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 345678889999999999999 88999999999999999999999999886666666666677778888888889999
Q ss_pred EEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhH
Q 015216 319 ILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQ 377 (411)
Q Consensus 319 ~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~ 377 (411)
+....++|..+|+.++..|+.+.+|. +.+++++++|||++|+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYGENYQ-----------------MVGALGINRDITKRKK 123 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSTTC-----------------EEEEEEEEEECSCC--
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCC-----------------EEEEEEEEecchhhhc
Confidence 99999999999999999999999999 8999999999999985
No 51
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.66 E-value=8.5e-16 Score=119.55 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=91.8
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceee-E
Q 015216 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN-L 96 (411)
Q Consensus 18 ~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e-~ 96 (411)
++++.+++++|++++++|.+ |+|+++|+++++++|+++++++|+++.+++ |++.......+...+. +.....+ .
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 56789999999999999997 999999999999999999999999987776 5555554455555554 4444444 4
Q ss_pred EEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
.+.+++|..+|+.++..|+++ .+|.+.|++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 778999999999999999999 8999999999999998
No 52
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.66 E-value=6.6e-16 Score=128.57 Aligned_cols=119 Identities=12% Similarity=0.100 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEc-CCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcce
Q 015216 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d-~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (411)
...++++.+++++|++++++| .+ |+|+++|+++++++|++ +++|+++.+++++.........+.+++..|.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 455789999999999999999 86 99999999999999999 8999998888877766666777888888888765
Q ss_pred eeEE-E--Ec-cC-CCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 94 VNLL-N--YK-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 94 ~e~~-~--~~-~d-G~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
.+.. + .+ .+ |..+|+.++..|+++ .+|.+.|++++++|||++|++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~ 138 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRA 138 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHH
Confidence 4422 2 22 23 778999999999999 899999999999999999997
No 53
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.66 E-value=3e-16 Score=123.18 Aligned_cols=114 Identities=10% Similarity=0.061 Sum_probs=104.7
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCC--CCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
.++++.+++++|++++.+|.+ +.++++|+++.+++||+++++.|.. +..+.+|++.......+...+..+.++..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 467889999999999999998 9999999999999999999988875 35678898888888888888888888999
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
++++.+++|..+|+..+..|+++ ++|.+.+++|+++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999999 8999999999999998
No 54
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.65 E-value=5.4e-16 Score=133.33 Aligned_cols=134 Identities=14% Similarity=0.122 Sum_probs=99.5
Q ss_pred hhhHHHHHHhcccccEEEEc-CCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEE
Q 015216 239 ISSSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (411)
Q Consensus 239 ~~~~l~~~l~~~~~~i~~~d-~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
.++.|..+++++|++++++| . +++++++|+++++++|++ +++|+++..++++.........+.+.+..+.+...
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 109 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 109 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccc
Confidence 34568888999999999999 8 889999999999999999 89999998888777665566677777778887655
Q ss_pred E-EEE--EecC--CCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHH----HHHHHHH
Q 015216 318 R-ILN--YRKD--KSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHG----LSLEMRQ 388 (411)
Q Consensus 318 e-~~~--~~~d--G~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~----L~~~~~~ 388 (411)
+ ... .+++ |..+|+.++..|+.+.+|. +.+++++++|||++|++|++ |++++++
T Consensus 110 ~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~-----------------~~g~~~~~~DITerk~~e~~~~~ll~~~~~~ 172 (185)
T 3kx0_X 110 SEWRLQTDYDGSGVEERYFDFVVTPRRRADGS-----------------IEGVQLIVDDVTSRVRARQAAEARVEELSER 172 (185)
T ss_dssp EEEEEC--------CCEEEEEEEEEEECTTSC-----------------EEEEEEEEEECHHHHTTCC------------
T ss_pred cceeEEeeccCCCCccEEEEEEEEEEECCCCC-----------------EEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4 333 2222 7889999999999999999 99999999999999999999 8877777
Q ss_pred HHHhhh
Q 015216 389 LSAIGA 394 (411)
Q Consensus 389 l~~~~~ 394 (411)
++.+..
T Consensus 173 l~~~~~ 178 (185)
T 3kx0_X 173 YRNVRD 178 (185)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 776543
No 55
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.64 E-value=2.9e-15 Score=141.07 Aligned_cols=119 Identities=38% Similarity=0.738 Sum_probs=108.0
Q ss_pred HHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEE
Q 015216 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (411)
Q Consensus 20 l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (411)
...+++++|++|+++|...++|+|+|+|+++++++||++++++|+++.++.++++.......+.+.+..+.++..+++..
T Consensus 13 ~~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 92 (332)
T 2wkq_A 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINY 92 (332)
T ss_dssp -CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 34578999999999999111299999999999999999999999999888888888777888889999999999999999
Q ss_pred ccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 100 ~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
++||..+|+.++..|+++ .+|.+.|++++.+|||+++++
T Consensus 93 ~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~ 131 (332)
T 2wkq_A 93 TKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 131 (332)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred cCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhh
Confidence 999999999999999999 899999999999999999986
No 56
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=119.96 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCC-cceeeEEEEc
Q 015216 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (411)
Q Consensus 22 ~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 100 (411)
.++++++++|+++|.+ |+|+|+|+++++++||++++++|+++..+.+|++.......+...+..+. ....++++++
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 4678899999999998 99999999999999999999999998888888887777677777676544 4578899999
Q ss_pred cCCCeEEEEEEEEEeeecCC-CeEEEEEEEeecccccc
Q 015216 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (411)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~-g~~~~~~~~~~DITe~k 137 (411)
+||..+|+..+..|+++ .. |.+.+++++.+||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999998 54 67778999999999875
No 57
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.63 E-value=4.2e-15 Score=117.58 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=90.9
Q ss_pred cchhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcC
Q 015216 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (411)
Q Consensus 234 ~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~ 313 (411)
..++..++.++.++++++++|+++|. +|+++++|+++++++||+++|++|+++..+.++.... ........+..+.
T Consensus 4 ~~l~~se~~~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGE 79 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCC
Confidence 35567778899999999999999999 8899999999999999999999999877665433322 2233445566677
Q ss_pred ceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 314 ~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
.+..+.+.+++||+.+|+.++..|+. +|. ++++++|||
T Consensus 80 ~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~--------------------~~~i~~DIT 117 (117)
T 2r78_A 80 PLREERTVWTRNGDQLTVELSAHLLP--DGK--------------------ILGIARDVS 117 (117)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEECT--TSC--------------------EEEEEEC--
T ss_pred cEEEEEEEEecCCCEEEEEEEEEEec--CCe--------------------EEEEEEeCC
Confidence 78889999999999999999999885 454 568889997
No 58
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.63 E-value=6.6e-15 Score=114.42 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=92.8
Q ss_pred hHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEE
Q 015216 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRIL 320 (411)
Q Consensus 241 ~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 320 (411)
+.++.+++++|++++++|. +++++++|+++++++|+++++++|+++..++ |++.......+...+.++.....+..
T Consensus 3 ~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDC 78 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeE
Confidence 4678889999999999998 8899999999999999999999999988877 66555555555555554443444447
Q ss_pred EEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 321 NYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 321 ~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
+.+++|..+|+.++..|+++.+|. +.+++++++|||
T Consensus 79 ~~~~~g~~~~~~~~~~p~~~~~g~-----------------~~~~~~~~~DIT 114 (114)
T 3luq_A 79 FVRADGRTQWLRWEVRPWYEGEGR-----------------VGGVVIFTEDIT 114 (114)
T ss_dssp EEC--CCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECC
T ss_pred EEcCCCcEEEEEEEEEEeECCCCC-----------------EEEEEEEEeeCC
Confidence 889999999999999999999999 999999999997
No 59
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-15 Score=117.91 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=96.6
Q ss_pred HHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhc-CceEEEEEEEec
Q 015216 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE-QACTVRILNYRK 324 (411)
Q Consensus 246 ~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 324 (411)
+++++++++++.|. +|+++|+|+++++++||++++++|+++..+++|++.......+.+.+..+ .....+++++++
T Consensus 8 ~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~ 84 (121)
T 2kdk_A 8 INVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAK 84 (121)
T ss_dssp CCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECS
T ss_pred cccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEc
Confidence 45678999999999 88999999999999999999999999988999998887777777766654 446788999999
Q ss_pred CCCEEEEEEEeeEEEcCCC-CcccccccCccccccccceeEEEEEeechhhhh
Q 015216 325 DKSSFWNLLHISPIRNASG-KQLASTFNSTSFTICPVEIAYFAAVHTEEGCRN 376 (411)
Q Consensus 325 dG~~~~~~~~~~~i~~~~g-~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k 376 (411)
||+.+|+.++..|++|..| . +.+++++.+||++.+
T Consensus 85 dG~~~~~~~~~~~~~d~~~~~-----------------~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 85 DGSFVTLKSQWFSFTNPDTKE-----------------LEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSCEEEEEEEEEEEECCSSSC-----------------EEEEEEEEECCSSCC
T ss_pred CCCEEEEEEEEEEEECCCCCe-----------------eeEEEEEEEeccccC
Confidence 9999999999999999864 5 678899999999865
No 60
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.62 E-value=1.4e-15 Score=122.57 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=91.1
Q ss_pred hhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCc-
Q 015216 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA- 314 (411)
Q Consensus 236 l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 314 (411)
++..+..+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..++++.+.......+......+..
T Consensus 11 l~~~~~~~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (130)
T 1d06_A 11 VRARDAHLRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKR 87 (130)
T ss_dssp HHHHTSCHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCcc
Confidence 344455688899999999999999 8899999999999999999999999988887766544433344444433332
Q ss_pred ---eEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 315 ---CTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 315 ---~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
...++..+++||+.+|+.++..|+.+. + ..+++++++|||
T Consensus 88 ~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~-~------------------~~~~~~~~~DIT 130 (130)
T 1d06_A 88 IIGIDRVVSGQRKDGSTFPMKLAVGEMRSG-G------------------ERFFTGFIRDLT 130 (130)
T ss_dssp STTSCEEEEEECTTSCEEEEEEEEEEEEET-T------------------EEEEEEEEEECC
T ss_pred ccCCeeEEEEEeCCCCEEEEEEEEEEEEEC-C------------------eEEEEEEEEECc
Confidence 235677899999999999999999863 3 346889999997
No 61
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.62 E-value=1.9e-15 Score=118.52 Aligned_cols=114 Identities=9% Similarity=-0.016 Sum_probs=104.4
Q ss_pred hhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCc--cccccCCCCchHHHHHHHHHHhhcCceEE
Q 015216 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (411)
Q Consensus 240 ~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
++.++.++++++++++.+|. ++.++++|+++++++||+++++.+.. +..++||++.......+...+..+..+..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 45688899999999999999 88999999999999999999988875 36678999988888888888888888999
Q ss_pred EEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 318 RILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 318 e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
++++.+++|+.+|+...+.|+++++|. +.+++++++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~~~g~-----------------~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFSDDGL-----------------FSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCC-----------------EEEEEEEEEecC
Confidence 999999999999999999999999999 899999999998
No 62
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2e-15 Score=129.82 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEc-CCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcce
Q 015216 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d-~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (411)
+..++++.+++++|++++++| .+ |+|+++|+++++++|++ +++|+++.+++++.........+..++..|.+..
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 456789999999999999999 76 99999999999999999 8999998888877766666677888888888766
Q ss_pred eeEEEE---cc-C-CCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 94 VNLLNY---KK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 94 ~e~~~~---~~-d-G~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
.+.... ++ + |..+|+.++..|+++ .+|.+.|++++++|||++|++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~ 158 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRA 158 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTT
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHH
Confidence 542222 22 2 788999999999999 899999999999999999998
No 63
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.62 E-value=3.6e-15 Score=120.56 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=106.7
Q ss_pred HHHHHhhCCCeEEEEcC---CCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeE
Q 015216 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (411)
Q Consensus 20 l~~l~e~~~~~i~i~d~---~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (411)
++.+++++|++++++|. + |+|+++|+++.+++||+.++++|+++..+.++.........+...+..+.++..++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34578999999999998 7 99999999999999999999999998888888877777788888888999889999
Q ss_pred EEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 97 ~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
...+++|..+|+.++..|+.+ .+|.+.+++++++|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 999999999999999999999 899999999999999999985
No 64
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.61 E-value=3.2e-15 Score=117.55 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCC--CCCCCCCccchhHHHHHHHHHHhCCcc
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
+..++++.+++++|++++++|.+ +|+++++|+++.+++|++++++.|++ +..+.+|++.......+.. +..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 55678899999999999999985 48999999999999999999999987 5556677766665555555 6677788
Q ss_pred eeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
..++++.+++|..+|+.++..|+.+ .+|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8899999999999999999999999 8999999999999998
No 65
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.60 E-value=1.6e-14 Score=113.14 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceee
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (411)
..++++.++++++++|+++|.+ |+|+++|+++++++||++++++|+++.++.++..... ...+..+..+.++
T Consensus 11 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e 82 (118)
T 3olo_A 11 EFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEE
Confidence 3456788999999999999997 9999999999999999999999999887775443322 2334445677888
Q ss_pred EEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
.++.+++|..+|+.++..|+.+ +|. .+++++++|||
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 8999999999999999999987 444 36779999997
No 66
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.59 E-value=2.5e-14 Score=113.99 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=89.3
Q ss_pred cchHHHhhhhHHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhh--ccCCCCCCCCCccchhHHHHH
Q 015216 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI--IGRNGRMFQGPRTNRRTIMEI 82 (411)
Q Consensus 5 ~~~~e~~~~~~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eel--iG~~~~~l~~~~~~~~~~~~~ 82 (411)
.+..|+++. +..++++.+++++|++|+++|.+ |+|+++|+++++++||+++++ +|++...+.+ +.......+
T Consensus 5 r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 5 RKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 345667776 67788999999999999999997 999999999999999999999 5676666654 222222221
Q ss_pred HHHHHhCCcceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
.. ...+....++..+.++||..+|+.++..|+.. +|.. +++++++|||
T Consensus 79 ~~-~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 SG-FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp HT-CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred HH-HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 11 11233445667778999999999988888755 5655 5788999998
No 67
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.58 E-value=3.7e-15 Score=123.64 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=92.0
Q ss_pred HHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEE---
Q 015216 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR--- 318 (411)
Q Consensus 242 ~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e--- 318 (411)
.+..+++++++||+++|. +|+|+++|+++++++|+++++++|+++.++++. ....+...+..++..|.+....
T Consensus 23 ~l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~ 98 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQ 98 (152)
T ss_dssp HHHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCS
T ss_pred HHHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeeccc
Confidence 467788999999999999 899999999999999999999999999888876 5555666678888877653321
Q ss_pred ------EEE---EecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHH
Q 015216 319 ------ILN---YRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDR 379 (411)
Q Consensus 319 ------~~~---~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e 379 (411)
+.. ..++|...|..++++|+.|++|+ +.+++.+++|||+++.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~-----------------v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 99 KPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGT-----------------IEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp SSCSSCC----------CCEEEEEEEEEEECTTSC-----------------EEEEEEEEEEEECC----
T ss_pred ccccccccccCCCCCCCcEEEEEEEEEEEECCCCC-----------------EEEEEEEEEECCHHHhcc
Confidence 111 23567788999999999999999 999999999999998754
No 68
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.58 E-value=8.6e-15 Score=115.07 Aligned_cols=119 Identities=8% Similarity=0.044 Sum_probs=99.8
Q ss_pred cchhhhhhHHHHHHhcccccEEEEcCCCCC-CCEEEecHHHHHHhCCCcccccCCc--cccccCCCCchHHHHHHHHHHh
Q 015216 234 PGMGFISSSLYISLGRIKQSFVLIDPHLPD-MPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQ 310 (411)
Q Consensus 234 ~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d-~~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~ 310 (411)
..++..++.+..++++++++++++|. + +.++++|+++++++|+++++++|.+ +..+++|++.......+.. +.
T Consensus 4 ~~l~~~~~~~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (125)
T 3eeh_A 4 QQAAKSERRVRELTEATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LM 79 (125)
T ss_dssp ------CHHHHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HH
Confidence 44556677889999999999999999 7 8999999999999999999999887 5666777766666655555 56
Q ss_pred hcCceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 311 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
.+..+..++++.+++|..+|+.++..|+.+.+|. +.+++++++|||
T Consensus 80 ~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~DIT 125 (125)
T 3eeh_A 80 DGESADVECRVNATEEYQRWVWIQGEPITNDAGE-----------------TVRVAGFARDIT 125 (125)
T ss_dssp TTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSC-----------------EEEEEEEEEECC
T ss_pred cCCCccEEEEEEcCCCCEEEEEEecEEEECCCCC-----------------EEEEEEEEEecC
Confidence 6777888999999999999999999999999999 899999999997
No 69
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.58 E-value=5e-14 Score=107.65 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=91.9
Q ss_pred CeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCC--CCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCeE
Q 015216 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (411)
Q Consensus 29 ~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (411)
.+++++|...++|+|+++|+++++++||+.++++|++ ...+.++.........+...+..+..+..++...+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788999743459999999999999999999999998 45455555555556777788888888888888899999999
Q ss_pred EEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 107 ~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
|+.++..|+.+ .+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999999 899999999999999985
No 70
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.57 E-value=3.9e-14 Score=113.33 Aligned_cols=116 Identities=26% Similarity=0.478 Sum_probs=100.3
Q ss_pred HHHHHHHHhhCCCeEEEEcC---CCCCccEEEecHHHHHHhCCchhhhccCC--CCCCCCCccchhHHHHHHHHHHhCCc
Q 015216 17 TLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERP 91 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~---~~~dg~i~~~N~~~~~l~G~~~eeliG~~--~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
.+.+...+++++++++++|. + |+|+++|+++.+++||+.++++|++ ...+.+++........+...+..+..
T Consensus 18 l~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (138)
T 2l0w_A 18 LDTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEE 94 (138)
T ss_dssp HHHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCC
Confidence 34455677889999999998 7 9999999999999999999999998 55566666666656677777778888
Q ss_pred ceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
+..+....+++|..+|+.++..|+.+ .+|.+.+++++++|||++
T Consensus 95 ~~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 95 RKVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred ceeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 88888888999999999999999999 899999999999999975
No 71
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.57 E-value=1e-14 Score=115.63 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=89.3
Q ss_pred HHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEec
Q 015216 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRK 324 (411)
Q Consensus 245 ~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 324 (411)
.++++++++++++|. +|+++++|+++++++|++.++++|+++..++++++.......+...+..+.. ..++++.++
T Consensus 3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (126)
T 3mjq_A 3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKK 78 (126)
T ss_dssp TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECT
T ss_pred hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEcc
Confidence 357889999999999 8899999999999999999999999998888887776666666666555544 778888899
Q ss_pred CCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHH
Q 015216 325 DKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEM 386 (411)
Q Consensus 325 dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~ 386 (411)
+|..+|+.++..|+.. +. ..+++++++|||++|++++++..+.
T Consensus 79 ~g~~~~~~~~~~~~~~--~~-----------------~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKW--HN-----------------EPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp TSCEEEEEEEEEEEES--SS-----------------SEEEEEEEEECC-------------
T ss_pred CCCEEEEEEEEEeeeE--CC-----------------ceEEEEEEEechHHHHhhcccchhh
Confidence 9999999999988765 33 4678999999999999998877554
No 72
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.56 E-value=7.9e-15 Score=116.28 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=90.1
Q ss_pred HHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEc
Q 015216 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (411)
Q Consensus 21 ~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (411)
+.+++++|++++++|.+ |+|+++|+++.+++|++.++++|+++.++.++++.......+...+..+.. ..++.+.+
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 45789999999999998 999999999999999999999999988887777666656666666655554 77888889
Q ss_pred cCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccchhc
Q 015216 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (411)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~~~ 142 (411)
++|..+|+.++..|+.. +...+++++++|||++|++++.
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~ 116 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSP 116 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC--------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhcc
Confidence 99999999999887655 3356799999999999998443
No 73
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.55 E-value=1.2e-13 Score=105.38 Aligned_cols=107 Identities=28% Similarity=0.527 Sum_probs=92.2
Q ss_pred ccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCc--cccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEE
Q 015216 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (411)
Q Consensus 252 ~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (411)
.+++++|...++++++++|+++++++||+.++++|++ +..+.++.........+.+.+..+..+..++...+++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 4788899754468999999999999999999999998 45555566566666777777888888888998899999999
Q ss_pred EEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 330 WNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 330 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
|+.++..|+.+.+|. +.+++++++|||++
T Consensus 82 ~~~~~~~~~~~~~g~-----------------~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKNEDGA-----------------VIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEECTTCC-----------------EEEEEEEEEEEEEC
T ss_pred EEEEEEEEeecCCCC-----------------EEEEEEEEEeccCC
Confidence 999999999999999 89999999999975
No 74
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.53 E-value=5.4e-15 Score=150.79 Aligned_cols=116 Identities=14% Similarity=0.103 Sum_probs=105.4
Q ss_pred HHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEE
Q 015216 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (411)
Q Consensus 19 ~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (411)
++..++++++++|+++|.+ |+|+|+|++|++++||+.++++|++.....++++... ...+.+.+..|..+..|+++
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEE
Confidence 4677899999999999998 9999999999999999999999998777777766554 45667788889999999999
Q ss_pred EccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
+++||+.+|+.++..|+++ .+|+++|++++++|||++|++
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 9999999999999999999 999999999999999999986
No 75
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.53 E-value=5.6e-14 Score=117.14 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc---
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (411)
....++..++++++++++++|.+ |+|+++|+++.+++|++.++++|+++..++++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 44567889999999999999997 999999999999999999999999988887776655555555555554433
Q ss_pred -ceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccchh
Q 015216 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (411)
Q Consensus 92 -~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~~ 141 (411)
+..++.+.+++|..+|+.++..|+ + .+|.+. ++++++|||+++++++
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~g~~~-~~~~~~DiT~~~~~e~ 161 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKV-S-AEGKVY-YLALVRDASVEMAQKE 161 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEE-E-ETTEEE-EEEEEEC---------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEE-e-cCCCEE-EEEEEecCcHHHHHHH
Confidence 456778889999999999999999 4 477775 9999999999998743
No 76
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.52 E-value=7.3e-14 Score=116.42 Aligned_cols=127 Identities=22% Similarity=0.314 Sum_probs=87.5
Q ss_pred hhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCc-
Q 015216 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA- 314 (411)
Q Consensus 236 l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 314 (411)
+......+..++++++++++++|. ++.++++|+++++++|++.++++|+++..++++.........+......+..
T Consensus 35 ~~~~~~~~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (167)
T 1v9y_A 35 DNAADGIFFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKAR 111 (167)
T ss_dssp -----CCHHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-----
T ss_pred HhhhhHHHHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCc
Confidence 344455688899999999999999 8899999999999999999999999998887776655555555555544433
Q ss_pred ---eEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHH
Q 015216 315 ---CTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSL 384 (411)
Q Consensus 315 ---~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~ 384 (411)
+..++...+++|..+|+.++..|+ +.+|. + +++++++|||++|+++++|+.
T Consensus 112 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~-----------------~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 112 VEGMSRELQLEKKDGSKIWTRFALSKV-SAEGK-----------------V-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp -----CEEEEECTTSCEEEEEEEEEEE-EETTE-----------------E-EEEEEEEC-------------
T ss_pred ccccceEEEEEcCCCcEEEEEEEEEEE-ecCCC-----------------E-EEEEEEecCcHHHHHHHHHHh
Confidence 455778889999999999999999 55676 5 489999999999999887764
No 77
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.52 E-value=3.3e-13 Score=107.78 Aligned_cols=118 Identities=25% Similarity=0.487 Sum_probs=100.4
Q ss_pred hHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCc--cccccCCCCchHHHHHHHHHHhhcCceEEE
Q 015216 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (411)
Q Consensus 241 ~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (411)
+.+...++.++++++++|...++++++++|+++++++|++.++++|++ +..+.+++........+...+..+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVE 98 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeE
Confidence 345566777999999999843356999999999999999999999998 566666666666667777777788888888
Q ss_pred EEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 319 ILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 319 ~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
+...+++|..+|+.++..|+.+.+|. +.+++++++|||++
T Consensus 99 ~~~~~~~g~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 99 IAFYRKDGSCFLCLVDVVPVKNEDGA-----------------VIMFILNFEVVMEK 138 (138)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSC-----------------EEEEEEEEEEEEEC
T ss_pred EEEECCCCCEEEEEEEEEEEeCCCCC-----------------EEEEEEEEEeccCC
Confidence 88899999999999999999999999 88999999999975
No 78
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.52 E-value=1.2e-13 Score=108.06 Aligned_cols=108 Identities=11% Similarity=0.130 Sum_probs=86.7
Q ss_pred hhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEE
Q 015216 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (411)
Q Consensus 239 ~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (411)
....+..++++++++++++|. +|+++++|+++++++||++++++|+++..+.++..... .+.+..+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e 82 (118)
T 3olo_A 11 EFKFAHYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEE
Confidence 334566788999999999999 88999999999999999999999999887764433222 2334456677889
Q ss_pred EEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 319 ILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 319 ~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
.++.+++|..+|+.++..|+.+. |. .+++++++|||
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~~-~~------------------~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRYRSQSGRIFLVEMSLTFLEDQ-ER------------------RFSCVFVREKS 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEEET-TE------------------EEEEEEEEEC-
T ss_pred EEEEccCCCEEEEEEEEEEEEEC-Cc------------------cEEEEEEEeCC
Confidence 99999999999999999999764 33 46779999997
No 79
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.51 E-value=1.3e-13 Score=113.30 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=93.5
Q ss_pred HHHhhCCCeEEEEc---CCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCcc-----------chhHHHHHHHHHH
Q 015216 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (411)
Q Consensus 22 ~l~e~~~~~i~i~d---~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (411)
.++++. ++++++| .+ |+|+++|+++++++||++++++|+++..+.+++. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 456664 8999999 55 9999999999999999999999999888777663 5566677788888
Q ss_pred hCCcceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeec
Q 015216 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (411)
Q Consensus 88 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~D 132 (411)
.+.++..++...++||..+|+.++..|+++ .+|++.+++++++|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888889999999999999999999999999 89999999999887
No 80
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.50 E-value=7.4e-14 Score=111.20 Aligned_cols=116 Identities=19% Similarity=0.129 Sum_probs=85.3
Q ss_pred CcchhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccc--cCCccccccCCCCchHHHHHHHHHHh
Q 015216 233 LPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNGVDTDTTVLYQIKESIQ 310 (411)
Q Consensus 233 ~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~--~g~~~~~l~~~~~~~~~~~~~~~~~~ 310 (411)
+..++..++.+..+++++|++|+++|. +|+|+++|+++++++||+++++ +|+++..+.+ +.......+.. ..
T Consensus 9 e~~L~~~~~~~~~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~-~~ 82 (126)
T 3bwl_A 9 EKRLEETSSRLEALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSG-FS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHT-CC
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHH-Hh
Confidence 344555667788999999999999999 8899999999999999999999 5676666655 22222222111 12
Q ss_pred hcCceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 311 TEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 311 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
.+.....+.++.++||+.+|+.++..|+.+ +|. ..++++++|||
T Consensus 83 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~------------------~~~~~~~~DIT 126 (126)
T 3bwl_A 83 VDERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE------------------DRFLAISRDIT 126 (126)
T ss_dssp TTCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE------------------EEEEEEEEEC-
T ss_pred cCCCcceEEEEEeCCCCEEEEEEEeEEEec-CCc------------------EEEEEEEEeCC
Confidence 334455667778999999999988888743 554 45788999998
No 81
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.50 E-value=2.4e-14 Score=113.56 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceee
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (411)
..++++.+++++|++|+++|.+ |+|+++|+++++++||++++++|+++.++.+++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 6678899999999999999998 9999999999999999999999999888874433333333334555566543
Q ss_pred EEEEccCCC-eEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 96 ~~~~~~dG~-~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
..++|. .+|+.++..|+.+ +|.+.|++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 233455 7899999999877 577789999999998
No 82
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.48 E-value=4.4e-13 Score=109.98 Aligned_cols=104 Identities=35% Similarity=0.700 Sum_probs=91.0
Q ss_pred cccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCC-----------chHHHHHHHHHHhhcCceEEEE
Q 015216 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQIKESIQTEQACTVRI 319 (411)
Q Consensus 251 ~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~ 319 (411)
+++++++|...++|+|+++|+++++++||++++++|+++..+.+++. .......+.+.+..+..+..++
T Consensus 35 ~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 114 (149)
T 3d72_A 35 SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEV 114 (149)
T ss_dssp TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEE
Confidence 48999999321288999999999999999999999999988887764 5666677778888888899999
Q ss_pred EEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeec
Q 015216 320 LNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTE 371 (411)
Q Consensus 320 ~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~D 371 (411)
+.++++|+.+|+.++..|+++.+|. +.+++++++|
T Consensus 115 ~~~~~dG~~~~~~~~~~~i~~~~g~-----------------~~~~v~~~~D 149 (149)
T 3d72_A 115 VNFKKNGQRFVNFLTMIPVRDETGE-----------------YRYSMGFQCE 149 (149)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSS-----------------EEEEEEECCC
T ss_pred EEECCCCCEEEEEEEEEEEEcCCCC-----------------EEEEEEEEeC
Confidence 9999999999999999999999999 8999999877
No 83
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.47 E-value=2e-14 Score=146.55 Aligned_cols=117 Identities=11% Similarity=0.088 Sum_probs=105.2
Q ss_pred HHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEE
Q 015216 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321 (411)
Q Consensus 242 ~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 321 (411)
.+...+++++++++++|. +|+|+|+|++|++++||+.++++|+++..+.++++... ...+.+.+..++.+.+|+++
T Consensus 519 ~~~~lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEE
Confidence 356678899999999999 88999999999999999999999999877777776554 45667778888889999999
Q ss_pred EecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHH
Q 015216 322 YRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDR 379 (411)
Q Consensus 322 ~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e 379 (411)
+++||+.+|+.+++.|++|.+|+ +.+++++++|||+||++|
T Consensus 595 ~~~dG~~~~~~~~~~pv~d~~G~-----------------v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTRTEDQ-----------------SLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCSSSSCEECCCCEEEECSTTSS-----------------CCEEEECCCCCSSSCCCC
T ss_pred EccCCcEEEEEEEEEEEECCCCC-----------------EEEEEEEEEeCchHhhCC
Confidence 99999999999999999999999 999999999999999864
No 84
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.46 E-value=4.7e-13 Score=119.48 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHh------------CCchhhhccCCCCCCCCCccchhHHHHHH
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~------------G~~~eeliG~~~~~l~~~~~~~~~~~~~~ 83 (411)
...++..++++++++|+++|.+ |+|+|+|+++++++ ||++++++|+++..+++. +.....+.
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 4567889999999999999998 99999999999998 899999999998877643 22222222
Q ss_pred HHHHhCCcceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 84 ~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
+.+. .++..++. .+| .|+.++++|+++ .+|++.|++++++|||+++++
T Consensus 94 ~~~~--~~~~~~~~---~~g--~~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANLT--GVHKAELN---LGG--RRFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTCC--SCEEEEEE---ETT--EEEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhcc--cceeEEEE---ECC--EEEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 2221 23333332 355 477899999999 899999999999999999987
No 85
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.46 E-value=1.5e-12 Score=116.19 Aligned_cols=119 Identities=11% Similarity=0.178 Sum_probs=92.6
Q ss_pred hHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHh------------CCCcccccCCccccccCCCCchHHHHHHHHH
Q 015216 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308 (411)
Q Consensus 241 ~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 308 (411)
..+..++++++++++++|. +|+|+|+|++|++++ ||++++++|+++..+.+. +.....+.+.
T Consensus 22 ~~l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~~ 95 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 95 (233)
T ss_dssp HHHHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHHh
Confidence 4567789999999999999 899999999999998 899999999998877642 2223333332
Q ss_pred HhhcCceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHH
Q 015216 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQ 388 (411)
Q Consensus 309 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~ 388 (411)
+. ..+..++. .+| .|+.++.+|++|++|+ +.+++++++|||+++++|++++...+.
T Consensus 96 ~~--~~~~~~~~---~~g--~~~~~~~~Pi~d~~G~-----------------~~g~v~~~~DITe~~~~e~ei~~l~~a 151 (233)
T 3vol_A 96 LT--GVHKAELN---LGG--RRFSLDVVPVFNDANE-----------------RLGSAVQWTDRTEEHRAEQEVSQLVQA 151 (233)
T ss_dssp CC--SCEEEEEE---ETT--EEEEEEEEEEECTTCC-----------------EEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cc--cceeEEEE---ECC--EEEEEEEEEEECCCCC-----------------EEEEEEEEehhhHHHHHHHHHHHHHHH
Confidence 22 23444443 345 4778999999999999 999999999999999999888765443
Q ss_pred H
Q 015216 389 L 389 (411)
Q Consensus 389 l 389 (411)
+
T Consensus 152 ~ 152 (233)
T 3vol_A 152 A 152 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.46 E-value=2.5e-13 Score=109.55 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCC------
Q 015216 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 90 (411)
.+.+..++++++++|+++|.+ |+|+++|+++++++||++++++|+++.++.++++.......+......+.
T Consensus 6 ~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T 3mfx_A 6 LETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPV 82 (129)
T ss_dssp HHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCS
T ss_pred HHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCccccccc
Confidence 356888999999999999998 99999999999999999999999999888877664432222222222221
Q ss_pred -cceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccc
Q 015216 91 -PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (411)
Q Consensus 91 -~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe 135 (411)
....|+..+++||+.+|++++++|+.+ ... .++++++|...
T Consensus 83 ~~~~~E~~~~rkdG~~~~velsis~i~~-~~~---~~v~~~~~~~~ 124 (129)
T 3mfx_A 83 QHPAQETTLICASGKAKDVELSISYIPG-HEP---MFVMVMHDLEH 124 (129)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEECS-SSC---EEEEEEEEC--
T ss_pred CCCceEEEEEcCCCCEEEEEEEEEEecC-CCc---EEEEEEechhh
Confidence 234688889999999999999999975 332 26777888643
No 87
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.45 E-value=3.4e-13 Score=108.69 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=83.9
Q ss_pred hHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcC-------
Q 015216 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ------- 313 (411)
Q Consensus 241 ~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 313 (411)
+.+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..++++++.......+......+.
T Consensus 7 ~~l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 3577889999999999999 889999999999999999999999999888877665432222121111111
Q ss_pred ceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhh
Q 015216 314 ACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGC 374 (411)
Q Consensus 314 ~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~ 374 (411)
....++..+++||+.+|++++++|+. ++. ..++++++|...
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~--~~~------------------~~~v~~~~~~~~ 124 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIP--GHE------------------PMFVMVMHDLEH 124 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEC--SSS------------------CEEEEEEEEC--
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEec--CCC------------------cEEEEEEechhh
Confidence 24578899999999999999999997 333 347888888743
No 88
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.44 E-value=5.9e-14 Score=111.08 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceee
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (411)
..+..+.+++++|++|+++|.+ |+|+++|+++++++|+++++++|+++.+++++.........+.+++..+.+...+
T Consensus 10 ~~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (118)
T 3fg8_A 10 HSSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTR 86 (118)
T ss_dssp ---CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEE
T ss_pred ccchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEE
Confidence 4456678999999999999997 9999999999999999999999999888777666666667788888888887774
Q ss_pred EEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
+....++| .|+.++..|+.+ |++++++|||++
T Consensus 87 ~~~~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 87 VDSLYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp EECSSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EEEEcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 33333456 578888888744 378889999986
No 89
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.44 E-value=2.6e-13 Score=130.19 Aligned_cols=108 Identities=8% Similarity=0.019 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc-ceeeEEEEccCCCeE
Q 015216 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPF 106 (411)
Q Consensus 28 ~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dG~~~ 106 (411)
.+.++..+.+ |+++|+|+++..++||+++|++|+++.+++||++...+...+...+..+.. ...+++++++||.++
T Consensus 278 ~~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 3456666766 999999999999999999999999999999999988888888787766554 567999999999999
Q ss_pred EEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 107 ~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
|++.++.+++++.+|++.+++|+.+|||+||+
T Consensus 355 Wv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999999338999999999999999985
No 90
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=130.21 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=97.9
Q ss_pred CCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCeEE
Q 015216 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (411)
Q Consensus 28 ~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~ 107 (411)
...++..+.+ |+++|+|+++..++||+++|++|+++.+++||++.......+...+..|.....+++++++||..+|
T Consensus 251 ~~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 251 EEFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp CEEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred ceeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 3445556665 9999999999999999999999999999999999988888888888888888889999999999999
Q ss_pred EEEEEEEeeecC-CCeEEEEEEEeecccccccc
Q 015216 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 108 ~~~~~~pi~~~~-~g~~~~~~~~~~DITe~k~~ 139 (411)
++.++.|+++ . +|++.+++++.+|||+++..
T Consensus 328 v~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 328 LQTHYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 9999999999 6 79999999999999999864
No 91
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.44 E-value=3.1e-13 Score=105.87 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=71.0
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEcc
Q 015216 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (411)
Q Consensus 22 ~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (411)
.++++++++|+++|.+ |+|+|+|+++.+++||+++|++|+++.++.+|++.......+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4789999999999987 9999999999999999999999999999999998776544332 233445678899999
Q ss_pred CCCeEEEEEEEEEeeecCCC
Q 015216 102 DGTPFWMLFKMSLVFGKEDG 121 (411)
Q Consensus 102 dG~~~~~~~~~~pi~~~~~g 121 (411)
||+.+|++.+++++.+ ..+
T Consensus 77 dG~~~wve~~~~~v~~-~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT-RAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEec-ccC
Confidence 9999999999999988 444
No 92
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.42 E-value=3.7e-13 Score=105.41 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=71.2
Q ss_pred HHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecC
Q 015216 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKD 325 (411)
Q Consensus 246 ~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d 325 (411)
++++++++++++|. +|+|+|+|+++.+++||+++|++|+++.+++||++.+.....+. ..+.....+++++++|
T Consensus 4 lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~kd 77 (111)
T 2vlg_A 4 PLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKKD 77 (111)
T ss_dssp -----CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECTT
T ss_pred hhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcCC
Confidence 57788999999998 88999999999999999999999999999999998876654432 2233445688899999
Q ss_pred CCEEEEEEEeeEEEcCCCC
Q 015216 326 KSSFWNLLHISPIRNASGK 344 (411)
Q Consensus 326 G~~~~~~~~~~~i~~~~g~ 344 (411)
|+++|++++++++.+..+.
T Consensus 78 G~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 78 HTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp SCEEEEEEEEEEC------
T ss_pred CCEEEEEEEEEEEecccCC
Confidence 9999999999999987654
No 93
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.41 E-value=2e-12 Score=102.69 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=79.3
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhC------------CchhhhccCCCCCCCCCccchhHHHHHHH
Q 015216 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G------------~~~eeliG~~~~~l~~~~~~~~~~~~~~~ 84 (411)
..+++.++++++++|+++|.+ |+|+|+|+++++++| |++++++|+++..+.+.. .... .
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~---~~~~---~ 74 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP---AHQR---H 74 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH---HHHH---H
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH---HHHH---H
Confidence 467899999999999999998 999999999999996 899999999987766432 1122 2
Q ss_pred HHHhC-CcceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 85 AIREE-RPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 85 ~~~~~-~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
.+... .++..++. .+|. ++.++.+|+++ .+|++.|++++++|||++
T Consensus 75 ~~~~~~~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 75 LLANLTGVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HHHHCSSCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred HHhCcCCCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 22222 23333332 2443 55788999999 899999999999999984
No 94
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.40 E-value=2.6e-12 Score=106.40 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=93.4
Q ss_pred HHHHHHHHhhCCCeEEEEcCCCCCccEEEecHH---HHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcce
Q 015216 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (411)
Q Consensus 17 ~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~---~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (411)
.+++.++++++|++|+++|.+ |+|+|+|++ +.+++| ..++++|+++.++.++. .......+...+++|.+..
T Consensus 18 ~~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 18 VEQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccE
Confidence 356889999999999999998 999999999 999999 56789999988876533 2333455677788888776
Q ss_pred eeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 94 ~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
.++.....+ ...++.++..|+++ ++|++.|++.+++|||+.+..
T Consensus 93 ~~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~l 136 (151)
T 2qkp_A 93 VNMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFEL 136 (151)
T ss_dssp EEEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGG
T ss_pred EEEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhh
Confidence 666553332 12456788999999 899999999999999998876
No 95
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.35 E-value=7e-12 Score=97.90 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=84.1
Q ss_pred HHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcc-eeeEEE
Q 015216 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (411)
Q Consensus 20 l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (411)
...++++++++|+++|.+ |+|+++|+++++++|++.++++|+++..+.++... ....+.+.+..+.+. ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 456999999999999998 99999999999999999999999987766554321 223455566666654 356665
Q ss_pred EccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78999999999999987 666 68999999985
No 96
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.33 E-value=2.1e-11 Score=96.69 Aligned_cols=105 Identities=12% Similarity=0.211 Sum_probs=78.9
Q ss_pred hHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhC------------CCcccccCCccccccCCCCchHHHHHHHHH
Q 015216 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308 (411)
Q Consensus 241 ~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~ 308 (411)
.++..++++++++++++|. +|+|+|+|+++++++| |++++++|+++..+.+. +.....+.+.
T Consensus 5 ~rl~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~~ 78 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 78 (121)
T ss_dssp HHHHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHhC
Confidence 4578899999999999999 8899999999999996 89999999998777632 2222222222
Q ss_pred HhhcCceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 309 IQTEQACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 309 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
.. ..+..++. .+|. ++.++.+|+++.+|+ +.+++++++|||++
T Consensus 79 ~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~-----------------~~g~v~~~~DiTee 121 (121)
T 4hi4_A 79 LT--GVHKAELN---LGGR--RFSLDVVPVFNDANA-----------------RLGSAVQWTDRTEE 121 (121)
T ss_dssp CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSC-----------------EEEEEEEEEECC--
T ss_pred cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCC-----------------EEEEEEEEEEecCC
Confidence 22 33444433 2443 557899999999999 99999999999974
No 97
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.31 E-value=2.3e-12 Score=101.84 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=76.1
Q ss_pred hhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEE
Q 015216 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVR 318 (411)
Q Consensus 239 ~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 318 (411)
.++.+..++++++++++++|. +|+|+++|+++++++|+++++++|+++..+++++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 445678889999999999999 88999999999999999999999999988873332222222224445555443
Q ss_pred EEEEecCCC-EEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 319 ILNYRKDKS-SFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 319 ~~~~~~dG~-~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
..++|. .+|+.++..|+.+. |. ..+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~~-~~-----------------~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDSH-RK-----------------SDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESSTT-TT-----------------TTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEecC-CC-----------------eEEEEEEEecCC
Confidence 234455 78999999998764 66 678999999997
No 98
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.31 E-value=1.1e-11 Score=102.63 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=94.5
Q ss_pred hhHHHHHHhcccccEEEEcCCCCCCCEEEecHH---HHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceE
Q 015216 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (411)
Q Consensus 240 ~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~---~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (411)
...+..+|++++++|+++|. +++|+|+|++ +++++| ..++++|+++..+.++. .......+.+.+.++....
T Consensus 18 ~~~l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 18 VEQANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccE
Confidence 34588899999999999999 8899999999 999999 56789999998765422 3333455667777787776
Q ss_pred EEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHH
Q 015216 317 VRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLS 383 (411)
Q Consensus 317 ~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~ 383 (411)
.++.....+ ...++.++..|++|++|+ +.|++.+++|||+.++.+.+.+
T Consensus 93 ~~~~~~~~~-~~~~v~v~~~Pi~d~~G~-----------------~~G~vev~~Dit~l~~le~~r~ 141 (151)
T 2qkp_A 93 VNMWFQSER-LGKFVYVTYAAVRDQAGD-----------------FQGVLEYVQDIKPFFELDSEFN 141 (151)
T ss_dssp EEEEEEETT-TTEEEEEEEEEEECTTCC-----------------EEEEEEEEEECGGGGGGGGC--
T ss_pred EEEEEecCC-CCeEEEEEEEEEECCCCC-----------------EEEEEEEEEECHHHHhhhhhhh
Confidence 666553332 135678899999999999 9999999999999988776543
No 99
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.30 E-value=2.3e-12 Score=101.79 Aligned_cols=106 Identities=9% Similarity=0.056 Sum_probs=84.9
Q ss_pred HHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEE
Q 015216 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILN 321 (411)
Q Consensus 242 ~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 321 (411)
....+++++|++++++|. +++|+++|+++++++|+++++++|+++..++++.........+.+.+..+.+...++..
T Consensus 13 ~~~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (118)
T 3fg8_A 13 GRENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVDS 89 (118)
T ss_dssp CCCCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEEC
T ss_pred hHHHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEEE
Confidence 344567899999999999 88999999999999999999999999988887666666667778888888887774433
Q ss_pred EecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 322 YRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 322 ~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
...+| .|+.++..|+.+ +++++++|||+|
T Consensus 90 ~~~~g--~~~~~~~~p~~~-----------------------g~v~~~~DITer 118 (118)
T 3fg8_A 90 LYSPG--MTIEVTAAADSG-----------------------ALVVHFRDVTAE 118 (118)
T ss_dssp SSSTT--CEEEEEEEEETT-----------------------EEEEEEEECSCC
T ss_pred EcCCC--eEEEEEEEEcCC-----------------------cEEEEEEeccCC
Confidence 33456 577788888632 367889999985
No 100
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.28 E-value=5.4e-11 Score=111.33 Aligned_cols=109 Identities=9% Similarity=0.030 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc-----ceeeEEEEcc
Q 015216 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKK 101 (411)
Q Consensus 27 ~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~ 101 (411)
..+.++..+.+ |+++|+|+++..++||+++|++|+++.+++||++.......+...+..|.. ...+++++++
T Consensus 153 ~~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~k 229 (339)
T 3rty_A 153 SPKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQ 229 (339)
T ss_dssp CCEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECT
T ss_pred CceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEcc
Confidence 35567777886 999999999999999999999999999999999998888888888887765 3578999999
Q ss_pred CCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 102 dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
||.++|++.+.++++++.++++..++++.+.|+....
T Consensus 230 dG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 230 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp TSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 9999999999999998556788899999999988654
No 101
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.24 E-value=3.8e-11 Score=93.65 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=82.5
Q ss_pred HHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCce-EEEEEE
Q 015216 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC-TVRILN 321 (411)
Q Consensus 243 l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 321 (411)
...++++++++++++|. +|+|+++|+++++++|++.++++|+++..++++... ....+.+.+..+... ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 34578899999999999 889999999999999999999999998777654321 123344555566553 456666
Q ss_pred EecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 322 YRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 322 ~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~-~g~------------------~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW-QRQ------------------LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE-TTE------------------EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec-CCc------------------eEEEEEEEeCC
Confidence 5 78999999999999998 775 47888899985
No 102
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.86 E-value=1.1e-12 Score=121.67 Aligned_cols=120 Identities=17% Similarity=0.090 Sum_probs=83.6
Q ss_pred HHhcccccEEEEcCCCCCCCEEEecHHHHHHhC---CCcccccCCccccccCCC---Cch--HHHHHHHHHHhh-cCceE
Q 015216 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGVD---TDT--TVLYQIKESIQT-EQACT 316 (411)
Q Consensus 246 ~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 316 (411)
.++++++||+++|. +|+|+++|+++++++| ++ ++++|+++..+.... ... .+...+...+.+ +....
T Consensus 175 ~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 45788999999999 8899999999999985 44 789999987776432 100 112222223333 33332
Q ss_pred EEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHHHHHHHHHHHHh
Q 015216 317 VRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHGLSLEMRQLSAI 392 (411)
Q Consensus 317 ~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~L~~~~~~l~~~ 392 (411)
.++.. . .+++.++..|+.+ +|+ +.+++.+++|||+.++.|++|+.....++++
T Consensus 251 ~ei~~---~--~~~l~v~~~Pi~~-~g~-----------------~~G~Vvv~rDITE~~~lE~eL~~K~~~IrEI 303 (305)
T 2ykf_A 251 MEVDA---G--GATVLLRTLPLVV-AGR-----------------NVGAAILIRDVTEVKRRDRALISKDATIREI 303 (305)
Confidence 22211 2 3567788899986 577 7899999999999999999998766655543
No 103
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.21 E-value=1e-11 Score=96.72 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCC---chhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~---~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
+..+.++.+++++|++++++|.+ |+|+++|+++++++|| +.++++|+++..+.++.. +...+..+.+
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 55677889999999999999998 9999999999999998 889999999888775532 4455556654
Q ss_pred ceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
..... ...+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 43222 23355 477788899987 788889999999998
No 104
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.20 E-value=9e-12 Score=97.35 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=75.6
Q ss_pred cccccEEEEcCCCCC-CCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHH-HHhh-cCce---EEEEEEE
Q 015216 249 RIKQSFVLIDPHLPD-MPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKE-SIQT-EQAC---TVRILNY 322 (411)
Q Consensus 249 ~~~~~i~~~d~~~~d-~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~ 322 (411)
+.+++|+++|. + |+|+++|+++++++||++++++|+++..++++.+... ...+.. .+.. +... ..++..+
T Consensus 6 ~~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (114)
T 1ll8_A 6 EFNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDII 81 (114)
T ss_dssp TTTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEEC
T ss_pred CCCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEE
Confidence 35579999999 7 8999999999999999999999999988887764332 222221 1111 1111 2356678
Q ss_pred ecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 323 RKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 323 ~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
++||+.+|+.++.+|+.+.++ .+++++++|++
T Consensus 82 ~~dG~~~~v~~~~~~~~~~~~-------------------~~~v~~~~~~~ 113 (114)
T 1ll8_A 82 SRSGEKIPVSVWMKRMRQERR-------------------LCCVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBSSSS-------------------BEEEEEEEECC
T ss_pred ecCCCEEEEEEEEEeeccCCc-------------------cEEEEEEeecC
Confidence 999999999999999986443 35788888875
No 105
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.20 E-value=1.4e-11 Score=96.30 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=75.8
Q ss_pred hCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHH-HHH-hCCcc---eeeEEEEc
Q 015216 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIR-EERPI---EVNLLNYK 100 (411)
Q Consensus 26 ~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~---~~e~~~~~ 100 (411)
+.+++|+++|.+ +|+|+++|+++++++||++++++|+++.++.++..... ...+.. .+. .+... ..++..++
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 455799999973 39999999999999999999999999888887654332 222221 111 12211 34567789
Q ss_pred cCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccc
Q 015216 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (411)
Q Consensus 101 ~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DIT 134 (411)
+||..+|+.++.+|+.+ ..+ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999987 443 36788888876
No 106
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.18 E-value=1.3e-10 Score=110.75 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceee
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (411)
....+..+++++++||+++|.+ |+|+|+|++ .+++ ++.++++|+++..++++.. ......+...+.+|.+...+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~-~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKS-VYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGG-HHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhh-HHHHHHHHHHHHcCCceEEE
Confidence 4567889999999999999998 999999999 9999 8999999999988876433 33345566778888776665
Q ss_pred EEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccc
Q 015216 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (411)
Q Consensus 96 ~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~ 139 (411)
.... .+| +++.++..|+++ .+|++.|++.+++|||+.+++
T Consensus 311 ~~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~l 350 (369)
T 3cax_A 311 FWLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKI 350 (369)
T ss_dssp EEEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTC
T ss_pred EEEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHH
Confidence 5443 456 578889999999 899999999999999999886
No 107
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.12 E-value=5.8e-10 Score=82.44 Aligned_cols=95 Identities=8% Similarity=0.075 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCeE
Q 015216 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (411)
Q Consensus 27 ~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 106 (411)
++++|+++|.+ |+|+++|+++++++|++.++++|+++..+ +. .......+...+..+..+... ..+|..+
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFLN----FYKFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEEE----EEEETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEEE----EEcCCcE
Confidence 47899999998 99999999999999999999999998777 22 233344556666666655322 2245557
Q ss_pred EEEEEEEEeeecCCCe-EEEEEEEeec
Q 015216 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (411)
Q Consensus 107 ~~~~~~~pi~~~~~g~-~~~~~~~~~D 132 (411)
|+.++..|+.+ .+|. +.|++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 99999999998 6554 6789988877
No 108
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.11 E-value=5.8e-11 Score=112.10 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=87.8
Q ss_pred HHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEE
Q 015216 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNY 322 (411)
Q Consensus 243 l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 322 (411)
+..++++++++|+++|. +|+|+++|+++++++||++++++|+++..+.++. .........+..+......
T Consensus 10 ~~~i~~~~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---- 79 (349)
T 3a0r_A 10 SESILESLETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFE---EIGSVAESVFENKEPVFLN---- 79 (349)
T ss_dssp CCSSGGGSSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTT---HHHHHHHHHHHHCCCCEEE----
T ss_pred HHHHHhhhcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChh---HHHHHHHHHHhcCCceeec----
Confidence 45578899999999999 8899999999999999999999999988774333 2233344455555554322
Q ss_pred ecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccce-eEEEEEeechhhhhHHHHHHHH
Q 015216 323 RKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEI-AYFAAVHTEEGCRNQDRHGLSL 384 (411)
Q Consensus 323 ~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i-~~~~~~~~DIT~~k~~e~~L~~ 384 (411)
...+..+|+.++..|+.+.+|. . .+++++++|||++|++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~~~~~DiTe~~~~e~~~~~ 125 (349)
T 3a0r_A 80 FYKFGERYFNIRFSPFRNAKTQ-----------------LLEGVIITIDDVTELYKYEEERKR 125 (349)
T ss_dssp CCCBTTBCCEEEEEEECCTTTT-----------------SSCEEEEEEECCSTTTTTTTTTTH
T ss_pred ccccCceEEEEEEEEEEcCCCc-----------------eeeEEEEEEEechHHHHHHHHHHH
Confidence 2223446888899999988776 4 5899999999999988876654
No 109
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.11 E-value=1.4e-10 Score=99.57 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCC-c-c
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-P-I 92 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~ 92 (411)
+....++.+++++++||+++|.+ |+|+++|+++++++|++.++++|+++..+.++... ...+..+. . .
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 45678899999999999999998 99999999999999999999999998887765431 22344443 2 2
Q ss_pred eeeEEEEccCCCeEEEEEEEEEeeecCCCe----EEEEEEEeeccccccc
Q 015216 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (411)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~----~~~~~~~~~DITe~k~ 138 (411)
..++. .+|. ++.++..|+.+ .+|. +.|++++++|||+.++
T Consensus 147 ~~~~~---~~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVV---INGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEE---ETTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEE---ECCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 22332 2664 45577899976 5666 7899999999999864
No 110
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.10 E-value=1.7e-09 Score=85.13 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=79.3
Q ss_pred HHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCC-CCCccchhHHHHHHHHHHhCCcceeeEEE-
Q 015216 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMF-QGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (411)
Q Consensus 21 ~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 98 (411)
..++++++.|++++|.+ |+|++||+++++++||++++++|+++... .+......+...+.+.+.+|. ...++.+
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999998 99999999999999999999999998764 444556666788888888777 4444444
Q ss_pred EccCCCeEEEEEEEEEeeecCCCeEEEEE
Q 015216 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (411)
Q Consensus 99 ~~~dG~~~~~~~~~~pi~~~~~g~~~~~~ 127 (411)
.+.+|.++++. +++... .+|...+++
T Consensus 96 ~~~~~~p~~v~--i~l~~~-~~~~~~~i~ 121 (125)
T 1nwz_A 96 FDYQMTPTKVK--VHMKKA-LSGDSYWVF 121 (125)
T ss_dssp ECTTSCCEEEE--EEEEEC-SSSSEEEEE
T ss_pred EcCCCCEEEEE--EEEEEc-CCCCEEEEE
Confidence 48999977665 555566 678777654
No 111
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.09 E-value=5.1e-11 Score=112.50 Aligned_cols=116 Identities=8% Similarity=0.063 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
+..++++.+++++|++|+++|.+ |+|+++|+++++++||++++++|+++.++.+++ .....+...+..+.+...
T Consensus 5 ~~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 78 (349)
T 3a0r_A 5 HLRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDFE---EIGSVAESVFENKEPVFL 78 (349)
T ss_dssp ----CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTT---HHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChh---HHHHHHHHHHhcCCceee
Confidence 34456778999999999999998 999999999999999999999999988874332 223344555666665433
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeE-EEEEEEeecccccccchh
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRN 141 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~-~~~~~~~~DITe~k~~~~ 141 (411)
. ...+..+|+.++..|+.+ .+|.. .|++++++|||+++++++
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~ 121 (349)
T 3a0r_A 79 N----FYKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEE 121 (349)
T ss_dssp E----CCCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTT
T ss_pred c----ccccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHH
Confidence 2 122344678889999998 67765 589999999999998744
No 112
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.08 E-value=1.3e-09 Score=85.90 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=78.2
Q ss_pred HHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCC-CCccchhHHHHHHHHHHhCCcceeeEEE-E
Q 015216 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQ-GPRTNRRTIMEIREAIREERPIEVNLLN-Y 99 (411)
Q Consensus 22 ~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~ 99 (411)
.++++++.|++++|.+ |+|++||.++++++||++++++|+++.... +......+...+.+.+.+|. ...++.+ .
T Consensus 26 ~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~ 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVF 101 (129)
T ss_dssp TTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEE
T ss_pred HHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE
Confidence 4699999999999998 999999999999999999999999987644 44556666788888888777 4444444 4
Q ss_pred ccCCCeEEEEEEEEEeeecCCCeEEEEE
Q 015216 100 KKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (411)
Q Consensus 100 ~~dG~~~~~~~~~~pi~~~~~g~~~~~~ 127 (411)
+.+|.++++. +++... .+|...+++
T Consensus 102 ~~~~~p~~v~--i~l~~~-~~~~~~~i~ 126 (129)
T 1mzu_A 102 DFQMAPVRVQ--IRMQNA-GVPDRYWIF 126 (129)
T ss_dssp ECSSCEEEEE--EEEEEC-SSTTEEEEE
T ss_pred cCCCCEEEEE--EEEEEc-CCCCEEEEE
Confidence 8999966655 555566 678777654
No 113
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.06 E-value=1e-09 Score=101.60 Aligned_cols=107 Identities=8% Similarity=0.040 Sum_probs=90.9
Q ss_pred CeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCc---ceeeEEEEccCCCe
Q 015216 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (411)
Q Consensus 29 ~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dG~~ 105 (411)
..+...+.+ |+++|+|+++..++||.++|++|+++.+++||+|.......+.+.+..+.. ...++|++++||.+
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 445556665 999999999999999999999999999999999998888888888887654 35789999999999
Q ss_pred EEEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 106 ~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
+|++.+.+++.++.++++..++++.+-++....
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~ 284 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLN 284 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCCSS
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCCCC
Confidence 999999999998456788888888776666544
No 114
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.02 E-value=8.3e-10 Score=105.12 Aligned_cols=118 Identities=10% Similarity=0.086 Sum_probs=94.9
Q ss_pred hhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEE
Q 015216 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTV 317 (411)
Q Consensus 238 ~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (411)
.....+..+++++++||+++|. +|+|+++|++ ++++ ++.++++|+++..++++. .......+.+.+.+|.....
T Consensus 236 ~~~~~l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~ 309 (369)
T 3cax_A 236 LNIEELKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEA 309 (369)
T ss_dssp ECHHHHHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCE
T ss_pred hhHHHHHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEE
Confidence 4445788999999999999999 8899999999 9999 899999999998876543 33344556667777776555
Q ss_pred EEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhhhHHHHH
Q 015216 318 RILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCRNQDRHG 381 (411)
Q Consensus 318 e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k~~e~~ 381 (411)
+.... .+| +++.++..|++|.+|+ +.|++.+++|||+.++.+++
T Consensus 310 ~~~~~-~~g--~~v~v~~~PI~d~~G~-----------------~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 310 TFWLR-LRE--KYVYIKYVPLFNEKGE-----------------YIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EEEEE-ETT--EEEEEEEEEEECTTSC-----------------EEEEEEEEEECHHHHTCCSC
T ss_pred EEEEe-eCC--EEEEEEEEEEECCCCC-----------------EEEEEEEEEcCHHHHHHHHH
Confidence 55443 456 5788999999999999 99999999999998876543
No 115
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.00 E-value=3.9e-09 Score=77.81 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=71.4
Q ss_pred ccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEE
Q 015216 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (411)
Q Consensus 250 ~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (411)
++++++++|. +++++++|+++++++|++.++++|+++..+ +. .......+.+.+..+..+.. .. .+|..+
T Consensus 1 ~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFL--NF--YKFGER 70 (96)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEE--EE--EEETTE
T ss_pred CCceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEE--EE--EcCCcE
Confidence 3679999999 889999999999999999999999998777 32 23344455556666655532 22 244557
Q ss_pred EEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeec
Q 015216 330 WNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTE 371 (411)
Q Consensus 330 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~D 371 (411)
|+.++..|+.+.+|.. +.+++++++|
T Consensus 71 ~~~~~~~p~~~~~~~~----------------~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRNAKTQL----------------LEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEECTTTCC----------------EEEEEEEEEC
T ss_pred EEEEEEEEeEcCCCCe----------------eeEEEEEecC
Confidence 9999999999876540 4688888776
No 116
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.00 E-value=1.3e-10 Score=90.28 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=80.4
Q ss_pred hhhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCC---CcccccCCccccccCCCCchHHHHHHHHHHhhc
Q 015216 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312 (411)
Q Consensus 236 l~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ 312 (411)
+......+..++++++++++++|. +|+|+++|+++++++|| +.++++|+++..+.++.. +.+.+..+
T Consensus 10 l~~~~~~~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~ 79 (118)
T 2w0n_A 10 ISTLFEQRQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDG 79 (118)
T ss_dssp HCTTHHHHHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTT
T ss_pred HHHHHHHHHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccC
Confidence 344556678899999999999999 88999999999999998 789999999877765432 33444444
Q ss_pred CceEEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechh
Q 015216 313 QACTVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEG 373 (411)
Q Consensus 313 ~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT 373 (411)
....... ...+| +|+.++..|+.+ +|. +.+++++++|||
T Consensus 80 ~~~~~~~--~~~~~--~~~~~~~~p~~~-~g~-----------------~~g~v~~~~DiT 118 (118)
T 2w0n_A 80 TPRRDEE--ITIKD--RLLLINTVPVRS-NGV-----------------IIGAISTFRDKT 118 (118)
T ss_dssp CCCCCCC--EESSS--CEECCCEECCCC-SSC-----------------CCCEEECCCCCC
T ss_pred ceeccEE--EEECC--EEEEEeeceeee-CCE-----------------EEEEEEEEEeCC
Confidence 4432211 23355 477888899987 788 788999999997
No 117
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.99 E-value=1.5e-09 Score=100.56 Aligned_cols=107 Identities=9% Similarity=0.044 Sum_probs=91.1
Q ss_pred CeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHh-CCcc-eeeEEEEccCCCeE
Q 015216 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE-ERPI-EVNLLNYKKDGTPF 106 (411)
Q Consensus 29 ~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~e~~~~~~dG~~~ 106 (411)
..+...+.+ |+++|+|+++..++||.++|++|+++.+++||+|.......+.+.+.. |.+. ..++|++++||.++
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345556665 999999999999999999999999999999999988877777777774 4455 46899999999999
Q ss_pred EEEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 107 ~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
|++.+.+++.++.++++..+++..+-++....
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 99999999988557889999999888887654
No 118
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.97 E-value=2.5e-09 Score=98.77 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=90.8
Q ss_pred eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCC-cce-eeEEEEccCCCeEE
Q 015216 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIE-VNLLNYKKDGTPFW 107 (411)
Q Consensus 30 ~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~e~~~~~~dG~~~~ 107 (411)
.+...+.+ |+++|+|+++..++||.++|++|+++.+++||+|.......+.+.+..+. ... .++|++++||.++|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45556665 99999999999999999999999999999999998888787888887554 455 58999999999999
Q ss_pred EEEEEEEeeecCCCeEEEEEEEeeccccccc
Q 015216 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (411)
Q Consensus 108 ~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~ 138 (411)
++.+.+++.++.++++..++++.+-++....
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~~ 274 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPLN 274 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCSS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCCC
Confidence 9999999988457888899999988887654
No 119
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.87 E-value=2.3e-08 Score=78.68 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=73.4
Q ss_pred HHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCC-CCchHHHHHHHHHHhhcCceEEEEEEE-
Q 015216 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV-DTDTTVLYQIKESIQTEQACTVRILNY- 322 (411)
Q Consensus 245 ~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~- 322 (411)
..+++++.|++++|. +++|+++|++++++.||++++++|+++...+.| .....+...+.+.+.+|. +..++...
T Consensus 21 ~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v~ 96 (125)
T 1nwz_A 21 GQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYTF 96 (125)
T ss_dssp HHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEEE
T ss_pred HHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE
Confidence 458999999999999 899999999999999999999999999764444 445556666777777666 55555444
Q ss_pred ecCCCEEEEEEEeeEEEcCCCC
Q 015216 323 RKDKSSFWNLLHISPIRNASGK 344 (411)
Q Consensus 323 ~~dG~~~~~~~~~~~i~~~~g~ 344 (411)
+.+|++++ +++++..+++|.
T Consensus 97 ~~~~~p~~--v~i~l~~~~~~~ 116 (125)
T 1nwz_A 97 DYQMTPTK--VKVHMKKALSGD 116 (125)
T ss_dssp CTTSCCEE--EEEEEEECSSSS
T ss_pred cCCCCEEE--EEEEEEEcCCCC
Confidence 88999555 556666677887
No 120
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.84 E-value=4.2e-08 Score=77.29 Aligned_cols=93 Identities=9% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCC-CCchHHHHHHHHHHhhcCceEEEEEE-Ee
Q 015216 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV-DTDTTVLYQIKESIQTEQACTVRILN-YR 323 (411)
Q Consensus 246 ~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~-~~ 323 (411)
.+++++.|++++|. +++|+++|.+++++.||++++++|+++...+.| .....+...+.+.+.+|. +..++.. .+
T Consensus 27 ~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~~ 102 (129)
T 1mzu_A 27 EFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVFD 102 (129)
T ss_dssp TGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEEE
T ss_pred HHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEc
Confidence 47889999999999 889999999999999999999999999764444 445556666777777666 5555544 48
Q ss_pred cCCCEEEEEEEeeEEEcCCCC
Q 015216 324 KDKSSFWNLLHISPIRNASGK 344 (411)
Q Consensus 324 ~dG~~~~~~~~~~~i~~~~g~ 344 (411)
.+|+++ .+++++..+++|.
T Consensus 103 ~~~~p~--~v~i~l~~~~~~~ 121 (129)
T 1mzu_A 103 FQMAPV--RVQIRMQNAGVPD 121 (129)
T ss_dssp CSSCEE--EEEEEEEECSSTT
T ss_pred CCCCEE--EEEEEEEEcCCCC
Confidence 889855 4566666777887
No 121
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.77 E-value=1.1e-08 Score=87.43 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=79.2
Q ss_pred hhhhhHHHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcC--c
Q 015216 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ--A 314 (411)
Q Consensus 237 ~~~~~~l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 314 (411)
......+..+++++++|++++|. +|+|+++|+++++++|++.++++|+++..+.++... .+.+..+. .
T Consensus 76 ~~~~~~l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~ 145 (190)
T 2jhe_A 76 EREHLALSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDS 145 (190)
T ss_dssp THHHHHHHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSC
T ss_pred HHHHHHHHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCC
Confidence 34456788999999999999999 889999999999999999999999999887765432 12333333 2
Q ss_pred eEEEEEEEecCCCEEEEEEEeeEEEcCCC----CcccccccCccccccccceeEEEEEeechhhhh
Q 015216 315 CTVRILNYRKDKSSFWNLLHISPIRNASG----KQLASTFNSTSFTICPVEIAYFAAVHTEEGCRN 376 (411)
Q Consensus 315 ~~~e~~~~~~dG~~~~~~~~~~~i~~~~g----~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~k 376 (411)
...++.. +|. ++.++..|+.+.+| . +.+++.+++|||+++
T Consensus 146 ~~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~-----------------~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 146 HNEHVVI---NGQ--NFLMEITPVYLQDENDQHV-----------------LTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEEEEEE---TTE--EEEEEEEEETTTTEEEEEE-----------------EE-HHHHHHHHTTTC
T ss_pred cceEEEE---CCe--EEEEEEEEEEecCCCCcce-----------------EEeEEEEEeccchhc
Confidence 3333332 664 45678899976433 2 467788899999976
No 122
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.88 E-value=1.5e-08 Score=93.71 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=76.6
Q ss_pred HhhCCCeEEEEcCCCCCccEEEecHHHHHHhC---CchhhhccCCCCCCCCCc---cch--hHHHHHHHHHHh-CCccee
Q 015216 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIEV 94 (411)
Q Consensus 24 ~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G---~~~eeliG~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~~ 94 (411)
++++++||+++|.+ |+|+++|+++.+++| ++ ++++|+++.++.+.. ... .....+...+.+ +.+...
T Consensus 176 ~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 176 SPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 56899999999998 999999999999985 54 789999988776542 100 112222234443 333332
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccccchhcC
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k~~~~~~ 143 (411)
+.. .+ .+++.++..|+.+ +|++.|++.+++|||+.++.++++
T Consensus 252 ei~---~~--~~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL 293 (305)
T 2ykf_A 252 EVD---AG--GATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRAL 293 (305)
Confidence 221 12 3566788899987 688899999999999999984443
No 123
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.20 E-value=2.3e-06 Score=66.95 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=81.9
Q ss_pred eEEEEcCCCCCccEEEecHHHHHHhCCch--hhhccCCCCCCCCCccch--hHHHHHHHHHHhCCcceeeEEEEccCCCe
Q 015216 30 SFTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTP 105 (411)
Q Consensus 30 ~i~i~d~~~~dg~i~~~N~~~~~l~G~~~--eeliG~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 105 (411)
-+.-.|.+ |+|+++..+..+ .+|.+ +|++|+.+.++++++|.. ...+...+++..|.....-++++.++|..
T Consensus 9 F~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 34555665 999999998874 77777 999999999999999865 77788889998888888889999999999
Q ss_pred EEEEEEEEEeeecCCCeEEEEEEEeecccccc
Q 015216 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (411)
Q Consensus 106 ~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k 137 (411)
+|++.....++++..+++-.++++..=+.+.-
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~~~ 116 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDREHS 116 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEECC--
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEcCCC
Confidence 99999998888854567777777766555443
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=98.13 E-value=6.2e-06 Score=64.51 Aligned_cols=85 Identities=8% Similarity=-0.042 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCEEEecHHHHHHhCCCc--ccccCCccccccCCCCch--HHHHHHHHHHhhcCceEEEEEEEecCCCEE
Q 015216 254 FVLIDPHLPDMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQIKESIQTEQACTVRILNYRKDKSSF 329 (411)
Q Consensus 254 i~~~d~~~~d~~i~~~N~~~~~l~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 329 (411)
+.-.+. ||.|+++..+..+ .+|.+ +|++|+.+.+++|++|.. .+.+...+++..|.....-+|++.++|.++
T Consensus 10 ~sRh~~---dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 10 MTKQDT---TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp EEEECT---TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred EEeecC---CCcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 344455 8999999999874 77777 899999999999999965 777888888888888888899999999999
Q ss_pred EEEEEeeEEEcCC
Q 015216 330 WNLLHISPIRNAS 342 (411)
Q Consensus 330 ~~~~~~~~i~~~~ 342 (411)
|+......+++..
T Consensus 86 ~~qT~sk~f~np~ 98 (132)
T 1oj5_A 86 SAHTRCKLCYPQS 98 (132)
T ss_dssp EEEEEEEEECC--
T ss_pred EEEEEEEEecCCC
Confidence 9999999888753
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=93.82 E-value=0.071 Score=49.20 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=36.2
Q ss_pred EEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccch
Q 015216 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNR 76 (411)
Q Consensus 31 i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~ 76 (411)
+++++.. +++|+.+|..+.+++|+++++++|+++.++++++...
T Consensus 45 Ll~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~ 88 (337)
T 2ool_A 45 LFVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAA 88 (337)
T ss_dssp EEEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHH
T ss_pred EEEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHH
Confidence 3445643 5899999999999999999999999998888765433
No 126
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=91.70 E-value=0.2 Score=46.24 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=48.3
Q ss_pred EEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcC---ceEEEEEEEec-CCCEEE
Q 015216 255 VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ---ACTVRILNYRK-DKSSFW 330 (411)
Q Consensus 255 ~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~-dG~~~~ 330 (411)
++++.. +++|+.+|..+.+++|+++++++|+++..+++++... .+...+..+. .....++.... +|..+|
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~----~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~ 119 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAA----RLTHALHGGDPAAINPIRLDVVTPDGERAFN 119 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHH----HHHHHHCC----CCCSEEEEEEETTEEEEEE
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHH----HHHHHHhcCCccccCcEEEEEeccCCCeEEE
Confidence 445541 6899999999999999999999999998888765433 3344443322 12233444443 355667
Q ss_pred EEEEe
Q 015216 331 NLLHI 335 (411)
Q Consensus 331 ~~~~~ 335 (411)
+.++.
T Consensus 120 ~~~Hr 124 (337)
T 2ool_A 120 GILHR 124 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65554
No 127
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=90.71 E-value=0.72 Score=33.70 Aligned_cols=45 Identities=22% Similarity=0.447 Sum_probs=36.3
Q ss_pred HHhhhhHHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCc
Q 015216 9 EQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFS 57 (411)
Q Consensus 9 e~~~~~~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~ 57 (411)
.++.+ ++.--.+.+..++|.++++-+.. ..|+|+|.+|.+||-..
T Consensus 12 SQSVn-k~iL~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ke 56 (127)
T 4ew7_A 12 SQSVN-KYILSIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKE 56 (127)
T ss_dssp -CHHH-HHHHHHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSC
T ss_pred hHHHH-HHHHhHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcc
Confidence 34444 45556788999999999999998 89999999999996543
No 128
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=87.32 E-value=5.1 Score=33.63 Aligned_cols=96 Identities=8% Similarity=0.065 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhCCC--eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcc
Q 015216 15 RYTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~--~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (411)
.....|..+.+..|. .++++|.+ |+++..+.. ...+.. ..+ ...+..++..+.++
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~----r~~f~~a~~~~~~~ 111 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LAD----RSFFIKAKETKKTV 111 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTT----SHHHHHHHHHCSCE
T ss_pred HHHHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cch----hHHHHHHHhcCCcE
Confidence 345566777776665 57888987 888876530 001111 111 12344556667665
Q ss_pred eeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 93 ~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
-.+...-..+|. ++-....|+++ .+|++.|++++..++...
T Consensus 112 is~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l 152 (217)
T 4dah_A 112 ISDSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYL 152 (217)
T ss_dssp ECCCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHH
T ss_pred EeceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHH
Confidence 444333334565 44456789998 899999999988887654
No 129
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=79.11 E-value=13 Score=31.35 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=59.7
Q ss_pred HhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCC
Q 015216 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (411)
Q Consensus 24 ~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 103 (411)
.+++|+--++.+.+ + ++|-++-..++|.+...+ ..+.+....+..|... -....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~--~~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYI--NVMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEE--EEEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEE--EeccCC
Confidence 56788888888875 3 344555567778765443 4455555555556553 235577
Q ss_pred CeEEEEEEEEEeeecCCCeEEEEEEEeecccc
Q 015216 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (411)
Q Consensus 104 ~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe 135 (411)
..+++.++-+|+.+...|+++|++.++.-.-.
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnn 144 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDN 144 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecC
Confidence 78888899999998788999998876655443
No 130
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=79.08 E-value=19 Score=27.46 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhCC-CeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 16 YTLWVHEALDELP-DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 16 ~~~~l~~l~e~~~-~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
.+..++.+-+... +.|++.|.+ |..+.... .+.+|+++.. .+ .+..++ .|+.+..
T Consensus 37 l~~~~~~~~~~~~~~~i~v~d~~---G~~~a~~~----------~~~iG~~~~~--~~--------~~~~al-~G~~~~~ 92 (131)
T 1p0z_A 37 IKALIDPMRSFSDATYITVGDAS---GQRLYHVN----------PDEIGKSMEG--GD--------SDEALI-NAKSYVS 92 (131)
T ss_dssp HHHHHHHHHHHSCCSEEEEEETT---SBEEECSS----------GGGTTSBCCS--SC--------CHHHHH-HCCCEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCC---CcEEEecC----------hhhCCCcccC--CC--------cHHHHh-CCCeEEE
Confidence 3444554444333 478888987 87665432 2346765431 11 123344 3444333
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe 135 (411)
.. ....| +.-....|+++ ++|+++|++.+..++..
T Consensus 93 ~~--~g~~g---~~~~~~~PV~~-~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 93 VR--KGSLG---SSLRGKSPIQD-ATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EE--EETTE---EEEEEEEEEEC-TTCCEEEEEEEEEEGGG
T ss_pred EE--Eccce---eeEEEEEeEEC-CCCCEEEEEEEEEEhHH
Confidence 21 11222 22233559998 78999999999888764
No 131
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=73.88 E-value=7.7 Score=35.30 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=39.6
Q ss_pred eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhC
Q 015216 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE 89 (411)
Q Consensus 30 ~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (411)
+++++|. +++|+.++..+..++|.++++++|+++..++.+. ....+...+...
T Consensus 31 ~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~----~~~~l~~~l~~~ 83 (327)
T 4e04_A 31 LLLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDSE----THNRLTIALAEP 83 (327)
T ss_dssp EEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHH----HHHHHHHHHHSC
T ss_pred EEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHH----HHHHHHHHhhcc
Confidence 3556673 5999999999999999999999999988776543 234455555543
No 132
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=73.79 E-value=31 Score=28.59 Aligned_cols=96 Identities=5% Similarity=0.007 Sum_probs=56.7
Q ss_pred hhhhHHHHHHhcccc--cEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCce
Q 015216 238 FISSSLYISLGRIKQ--SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (411)
Q Consensus 238 ~~~~~l~~~l~~~~~--~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 315 (411)
.....|...+...+. .+++.|. +|.++..++. ...+. ...++ ..+.+++..++.+
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~---~G~~~~~~~~----------~~~~~------~~~~r----~~f~~a~~~~~~~ 111 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNA---KGDVTASTTE----------LKTKV------NLADR----SFFIKAKETKKTV 111 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEET---TCBEEEESSC----------CSSCC------BCTTS----HHHHHHHHHCSCE
T ss_pred HHHHHHHHHHhcCCcccEEEEECC---CCcEEEecCC----------CCCCC------Ccchh----HHHHHHHhcCCcE
Confidence 344455555554443 5788898 7888775430 00111 11122 2234455556655
Q ss_pred EEEEEEEecCCCEEEEEEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhhh
Q 015216 316 TVRILNYRKDKSSFWNLLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGCR 375 (411)
Q Consensus 316 ~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~~ 375 (411)
-.+...-..+|. ++.....|+++.+|+ +.|++++..++...
T Consensus 112 is~~~~~~~~g~--~~i~ia~pi~~~~g~-----------------~~Gvl~~~i~l~~l 152 (217)
T 4dah_A 112 ISDSYSSRITGQ--PIFTICVPVLDSKRN-----------------VTDYLVAAIQIDYL 152 (217)
T ss_dssp ECCCEECTTTCS--EEEEEEEEEECTTSC-----------------EEEEEEEEEEHHHH
T ss_pred EeceEEcCCCCC--EEEEEEEEEECCCCC-----------------EEEEEEEEEcHHHH
Confidence 444333344565 566778999998999 89999988887654
No 133
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=70.99 E-value=15 Score=32.07 Aligned_cols=88 Identities=14% Similarity=0.249 Sum_probs=59.2
Q ss_pred HhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEEEEccCC
Q 015216 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (411)
Q Consensus 24 ~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 103 (411)
.+++|+.-++.+.+ | +.|-++-..++|.+...+ ..+.+....+..|... -.+..+
T Consensus 77 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~--~~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---N--ILWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLV--QTPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---E--EEEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEE--EECCSS
T ss_pred ccCCCcEEEEEeCC---c--eEEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEE--EeccCC
Confidence 56788888888875 3 334445556677665433 4455555556666553 245677
Q ss_pred CeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 104 ~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
..+++.++-+|+.+...|++.|++.++...-..
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnN 164 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDN 164 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTTC
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCc
Confidence 788888999999987889999998777665544
No 134
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=68.17 E-value=66 Score=28.69 Aligned_cols=96 Identities=15% Similarity=0.047 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhC-CCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 16 YTLWVHEALDEL-PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 16 ~~~~l~~l~e~~-~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
.+..+..+.+.. -..+++.|.+ |+++..+.. -.+..++|.+.. ....+.+++..+....
T Consensus 100 l~~~L~~~~~~~~~~~i~v~d~~---G~viass~~------~~p~~~~g~d~~----------~R~yf~~Al~g~~~~~- 159 (305)
T 3e4o_A 100 INRKLEALATSAEAAVIYLIDRS---GVAVAASNW------QEPTSFVGNDYA----------FRDYFRLAVRDGMAEH- 159 (305)
T ss_dssp HHHHHHHHHHHSSCSEEEEEETT---SBEEEETTT------TSTTCCTTCBCT----------TSHHHHHHHHHSEEEE-
T ss_pred HHHHHHHHHhccCccEEEEECCC---CCEEEeCCC------cCcccccCCCcc----------ccHHHHHHHhcCCcEE-
Confidence 344555544433 3468899998 988876531 011122332211 1233455666543322
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
+..-...|... -....|+++ +|+++|++++..|+...
T Consensus 160 -~~~~~~tg~~~--i~~a~PV~~--~G~viGVv~v~i~l~~l 196 (305)
T 3e4o_A 160 -FAMGTVSKRPG--LYISRRVDG--PGGPLGVIVAKLEFDGV 196 (305)
T ss_dssp -EEECTTTCCEE--EEEEEEEEE--TTEEEEEEEEEECCHHH
T ss_pred -EEEecCCCCEE--EEEEEEEcc--CCeEEEEEEEEEcHHHH
Confidence 22223345543 345789988 69999999998887643
No 135
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=65.54 E-value=58 Score=27.59 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCC--eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHH--hCCc
Q 015216 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERP 91 (411)
Q Consensus 16 ~~~~l~~l~e~~~~--~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 91 (411)
....|..+....|. .++++|.+ |+ +..+.. .. ..+.+. .+ ...+..++. .+..
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~~------~~----r~~f~~a~~~~~~~~ 112 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALDN------SD----RSYFRYHRANDDHTL 112 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCBC------TT----SHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCCc------cc----HHHHHHHHhCCCCCe
Confidence 45667777777776 58889987 88 443321 00 011111 11 123445555 3444
Q ss_pred ceeeEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccc
Q 015216 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (411)
Q Consensus 92 ~~~e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe 135 (411)
+-.+...-...|. |+-....|+++ .+|++.|++++..++..
T Consensus 113 ~is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~ 153 (254)
T 3lif_A 113 LITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEY 153 (254)
T ss_dssp EEEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHH
T ss_pred EECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHH
Confidence 4443332233554 44456789998 89999999998877643
No 136
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=64.30 E-value=22 Score=32.26 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCC
Q 015216 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (411)
Q Consensus 254 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~ 295 (411)
+++++. +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 32 Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~ 70 (327)
T 4e04_A 32 LLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDS 70 (327)
T ss_dssp EEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH
T ss_pred EEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCH
Confidence 455564 889999999999999999999999999888754
No 137
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=62.12 E-value=3.6 Score=37.73 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=34.5
Q ss_pred eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCC
Q 015216 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (411)
Q Consensus 30 ~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~ 72 (411)
+++++|.. +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 54 ~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 54 ALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 34556653 599999999999999999999999998877765
No 138
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=61.93 E-value=35 Score=25.93 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=44.4
Q ss_pred ccEEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEEEE
Q 015216 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWN 331 (411)
Q Consensus 252 ~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~ 331 (411)
+.++++|. +|..++... .+.+|+++.. .+ .+..++. |+.+.... .|...+.
T Consensus 51 ~~i~v~d~---~G~~~a~~~----------~~~iG~~~~~--~~--------~~~~al~-G~~~~~~~-----~g~~g~~ 101 (131)
T 1p0z_A 51 TYITVGDA---SGQRLYHVN----------PDEIGKSMEG--GD--------SDEALIN-AKSYVSVR-----KGSLGSS 101 (131)
T ss_dssp SEEEEEET---TSBEEECSS----------GGGTTSBCCS--SC--------CHHHHHH-CCCEEEEE-----EETTEEE
T ss_pred CEEEEEcC---CCcEEEecC----------hhhCCCcccC--CC--------cHHHHhC-CCeEEEEE-----Eccceee
Confidence 46889999 777665432 2346665421 11 1223343 44443321 2222233
Q ss_pred EEEeeEEEcCCCCcccccccCccccccccceeEEEEEeechhh
Q 015216 332 LLHISPIRNASGKQLASTFNSTSFTICPVEIAYFAAVHTEEGC 374 (411)
Q Consensus 332 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~DIT~ 374 (411)
.....||++++|+ ++|++++..++..
T Consensus 102 ~~~~~PV~~~~g~-----------------viGvv~vg~~l~~ 127 (131)
T 1p0z_A 102 LRGKSPIQDATGK-----------------VIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEECTTCC-----------------EEEEEEEEEEGGG
T ss_pred EEEEEeEECCCCC-----------------EEEEEEEEEEhHH
Confidence 3455699988899 9999999888764
No 139
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=61.51 E-value=34 Score=26.50 Aligned_cols=91 Identities=12% Similarity=0.027 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhCC-CeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCccee
Q 015216 16 YTLWVHEALDELP-DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (411)
Q Consensus 16 ~~~~l~~l~e~~~-~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (411)
.+..++.+-+... +.|++.|.+ |..++.. ..+.+|+++.. +. +..++ .|+.+..
T Consensus 43 l~~~~~~~~~~~~~~~i~v~d~~---G~~~~~~----------~~~~iG~~~~~---~~--------~~~al-~G~~~~~ 97 (142)
T 3by8_A 43 IQAIAEAVRKRNDLLFIVVTDMQ---SLRYSHP----------EAQRIGQPFKG---DD--------ILKAL-NGEENVA 97 (142)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETT---CBBSCCS----------SGGGTTSBCCC---GG--------GTGGG-GTCCEEE
T ss_pred HHHHHHHHHhhcCCcEEEEECCC---CcEEECC----------ChHHCCCcCCC---CC--------HHHHh-CCCeEEE
Confidence 4444555444333 478888987 7554432 23457765431 11 11223 3444322
Q ss_pred eEEEEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccccc
Q 015216 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (411)
Q Consensus 95 e~~~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~k 137 (411)
. .....|..+ ....|+++ ++|+++|++++..++....
T Consensus 98 ~--~~~~~g~~~---~~~~PV~~-~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 98 I--NRGFLAQAL---RVFTPIYD-ENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp E--ECSSSSCEE---EEEEEEEC-TTSCEEEEEEEEEEHHHHH
T ss_pred E--ecCccEEEE---EEEEeEEc-CCCCEEEEEEEeEEHHHHH
Confidence 1 122233322 23459998 7899999999988876543
No 140
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=55.51 E-value=9.2 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=33.7
Q ss_pred EEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCC
Q 015216 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (411)
Q Consensus 254 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~ 295 (411)
+++++.. +++|+.++..+.+++|.++++++|+++..++.+
T Consensus 55 LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 3445542 789999999999999999999999999888765
No 141
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=48.78 E-value=72 Score=27.50 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.0
Q ss_pred cccEEEEcCCCCCCCEEEecHHHHHHhCCCcccc
Q 015216 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284 (411)
Q Consensus 251 ~~~i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~ 284 (411)
...++++|.. .+.+.+++..+..++||+++++
T Consensus 43 ~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 43 GGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp SSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred CCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 3457888865 6799999999999999998876
No 142
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=48.70 E-value=64 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhh
Q 015216 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eel 61 (411)
.+...+..+.......++++|.. .+.+.+++..+..++||+++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 30 QHQQFVRSLTEVNGGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HHHHHHHHHHHHHSSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 34455555666667779999966 5899999999999999999877
No 143
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=43.25 E-value=7.1 Score=38.06 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=34.3
Q ss_pred eEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCc
Q 015216 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (411)
Q Consensus 30 ~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~ 73 (411)
.++++|.. +++|+.++.....++|.++++++|+++..++++.
T Consensus 31 ~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 31 LVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 34556653 5999999999999999999999999977766544
No 144
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=38.66 E-value=37 Score=30.27 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhC
Q 015216 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (411)
Q Consensus 16 ~~~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G 55 (411)
...-+..+++..|.+.+++|.. +.|+.+|+++..++|
T Consensus 97 v~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 97 SLQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred cCHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 4556788999888899999998 999999999999996
No 145
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=33.49 E-value=81 Score=30.51 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=44.3
Q ss_pred EEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCcccc-ccCCCCchHHHHHHHHHHhhcCceEEEEEEEecCCCEEEEE
Q 015216 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGVDTDTTVLYQIKESIQTEQACTVRILNYRKDKSSFWNL 332 (411)
Q Consensus 254 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 332 (411)
++.++. +++|+.++....+++|.++ ++|+++.. ++.+ .....+...+.........+.+ ..+|..+++.
T Consensus 29 Ll~l~~---~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~----~~~~~l~~~l~~~~~~~~p~~~-~~~~~~f~~~ 98 (505)
T 3nhq_A 29 LVTLRA---DGMVLAASENIQALLGFVA--SPGSYLTQEQVGP----EVLRMLEEGLTGNGPWSNSVET-RIGEHLFDVI 98 (505)
T ss_dssp EEEECT---TSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHH----HHHHHHHHHHSCSSCCCCEEEE-CSSSSCEEEE
T ss_pred EEEEcC---CCeEEEEcccHHHHhCccc--ccCCchhhhhCCH----HHHHHHHHHhhcccccCCcEEE-ecCCceEEEE
Confidence 456676 7899999999999999988 99999877 6643 2334444544433221112222 2445555554
Q ss_pred EE
Q 015216 333 LH 334 (411)
Q Consensus 333 ~~ 334 (411)
++
T Consensus 99 ~H 100 (505)
T 3nhq_A 99 GH 100 (505)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 146
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=33.45 E-value=76 Score=30.67 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=42.4
Q ss_pred EEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCC-CCCCccchhHHHHHHHHHHhCCcceeeEEEEccCCCeEEEE
Q 015216 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWML 109 (411)
Q Consensus 31 i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~ 109 (411)
++++|.+ ++|+.++.....++|.++ ++|+++.. ++++ .....+...+...........+ +.+|..+++.
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~----~~~~~l~~~l~~~~~~~~p~~~-~~~~~~f~~~ 98 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVGP----EVLRMLEEGLTGNGPWSNSVET-RIGEHLFDVI 98 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHHH----HHHHHHHHHHSCSSCCCCEEEE-CSSSSCEEEE
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCCH----HHHHHHHHHhhcccccCCcEEE-ecCCceEEEE
Confidence 4455654 999999999999999988 89998876 5543 2334455555433221111222 2455555543
No 147
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=33.42 E-value=91 Score=25.62 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHhCCcceeeEEEEccCCCeEEEEEEEEEeeecCC-CeEEEEEEEeeccccc
Q 015216 82 IREAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSR 136 (411)
Q Consensus 82 ~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~~-g~~~~~~~~~~DITe~ 136 (411)
+..++..+.++-.+...-..+|. ++-....|+.+ .+ |++.|++++..+....
T Consensus 95 ~~~~~~~~~~~~s~~~~~~~~~~--~~i~~~~pi~~-~~~g~~~Gvl~~~i~~~~l 147 (240)
T 3c8c_A 95 YKDAKNAGKLVITAPYADSASGE--ILVSVATPVKD-SATGQFLGSIFYDVSLAEL 147 (240)
T ss_dssp HHHHHHHTSCEECCCEECTTTCC--EEEEEEEEEEC-TTTCCEEEEEEEEECHHHH
T ss_pred HHHHHhcCCcEEeeceEcCCCCe--EEEEEEEEEEE-CCCCeEEEEEEEEEEHHHH
Confidence 33445555543333222223455 44455789988 55 9999999887776543
No 148
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=32.97 E-value=1.2e+02 Score=26.61 Aligned_cols=105 Identities=10% Similarity=-0.074 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhCCC--eEEEEcCCCCCcc-EEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHh--C
Q 015216 15 RYTLWVHEALDELPD--SFTITDPSISGHP-IVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE--E 89 (411)
Q Consensus 15 ~~~~~l~~l~e~~~~--~i~i~d~~~~dg~-i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~--~ 89 (411)
+.+..|..+.++.+. .|.++|.+ |+ ++.+|...-..+-.+..++ . +......+.+++.. +
T Consensus 64 ~l~~~~~~~~~~~~~~~~i~lid~~---G~~i~~~~~~~~~~~~~p~~~l--------~----n~~~R~yf~~a~~~~~~ 128 (295)
T 3lid_A 64 ILENMWSSVARNQKLYKQIRFLDTS---GTEKVRIKYDFKTSIAGPSLIL--------R----DKSAREYFKYAQSLDNE 128 (295)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEETT---SBEEEEEEEETTTTEEEECSCC--------C----BCTTSHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCccccEEEEECCC---CCEEEEEEccCCceeEcCcccc--------c----cchhhHHHHHHhcCCCC
Confidence 445567777766554 47888987 75 4455543111111111111 1 11112344555543 3
Q ss_pred CcceeeEEEEccCC----CeEEEEEEEEEeeecCCCeEEEEEEEeeccccc
Q 015216 90 RPIEVNLLNYKKDG----TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (411)
Q Consensus 90 ~~~~~e~~~~~~dG----~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe~ 136 (411)
..+......-..+| ...++-.-+.|+.. +|++.|++++-.|+...
T Consensus 129 ~~~~s~~~~~~~~g~~~~~~~p~i~~a~pV~~--~g~~~GVlv~~i~l~~l 177 (295)
T 3lid_A 129 QISAWGIELERDKGELVYPLSPSLRILMPISV--NDVRQGYLVLNVDIEYL 177 (295)
T ss_dssp CCEECCCEECEETTEECSSCCEEEEEEEEEEE--TTEEEEEEEEEEEHHHH
T ss_pred cEEEeCceecccCCcccCCCCCEEEEEEEEcc--CCeEEEEEEEEecHHHH
Confidence 33333322222233 22355566889975 89999999988887654
No 149
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=27.99 E-value=1.9e+02 Score=21.60 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEE
Q 015216 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (411)
Q Consensus 18 ~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (411)
+..+.+.+.+..+|.++|.+ . |+-+ .|....+.+++++ -....+++.+++.......
T Consensus 6 ~~AeiI~~~~~~aV~ItD~~---~-ilA~-------~G~g~~~~~~~~i------------s~~~~~~i~~~k~~~~~~~ 62 (123)
T 2w1r_A 6 EYADALYDSLGHSVLICDRD---V-YIAV-------SGSSKKDYLNKSI------------SEMLERTMDQRSSVLESDA 62 (123)
T ss_dssp HHHHHHHHHHCSEEEEECSS---B-EEEE-------ESSCHHHHBTCBB------------CHHHHHHHHHCSCEEESSC
T ss_pred HHHHHHHHHHCCeEEEEcCc---c-EEEE-------EecChhhcCCCcc------------CHHHHHHHHcCCEEEEcCC
Confidence 34456677777799999986 3 4432 3554555555322 1225567888876433111
Q ss_pred --EEcc-CCCeEEEEEEEEEeeecCCCeEEEEEEEe
Q 015216 98 --NYKK-DGTPFWMLFKMSLVFGKEDGRATHFVAVQ 130 (411)
Q Consensus 98 --~~~~-dG~~~~~~~~~~pi~~~~~g~~~~~~~~~ 130 (411)
+... +.........+.|+.. +|.++|.+.+.
T Consensus 63 ~~~~~~~~~~~~~~s~ii~PI~~--~g~viG~i~l~ 96 (123)
T 2w1r_A 63 KSVQLVNGIDEDMNSYTVGPIVA--NGDPIGAVVIF 96 (123)
T ss_dssp EEEESBTTCEEEESEEEEEEEEE--TTEEEEEEEEE
T ss_pred ccccccCCCCCCeeEEEEEEEEE--CCEEEEEEEEE
Confidence 1111 1112223356789998 88999999887
No 150
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=26.53 E-value=1.9e+02 Score=21.11 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHhcccccEEEEcCCCCCCCEEEecHHHHHHhCC
Q 015216 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279 (411)
Q Consensus 243 l~~~l~~~~~~i~~~d~~~~d~~i~~~N~~~~~l~G~ 279 (411)
...+..+.|..+++-+. ...|+|.|.+|.+++--
T Consensus 22 iq~iY~nSPVpVCVRNq---~RkilYaN~aF~elF~K 55 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQ---SRKIIYANGAFIELFSK 55 (127)
T ss_dssp HHHHHTTCSSCEEEECT---TSCEEEECHHHHHHTTS
T ss_pred HHhhhcCCCccEEEecc---cceEEEecchHHHHhhc
Confidence 33455779999999999 77999999999999643
No 151
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=24.57 E-value=27 Score=33.97 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCCEEEecHHHHHHhCCCcccccCCccccccCCC
Q 015216 254 FVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (411)
Q Consensus 254 i~~~d~~~~d~~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~ 296 (411)
++.++.. +++|+.++....+++|.++++++|+++..++.+.
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 3445542 7899999999999999999999999987777554
No 152
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=22.45 E-value=2.6e+02 Score=21.21 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHhCCcceeeEEEEccCCCeEEEEEEEEEeeecC---------CCeEEEEEEEeeccccc
Q 015216 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKE---------DGRATHFVAVQVPIVSR 136 (411)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~---------~g~~~~~~~~~~DITe~ 136 (411)
.+.+..|++..+. ...+|...+ ..+.|+.+ + .|.+.|++-+..+..+-
T Consensus 72 ~~~l~~g~~~~~~---~~~~g~~~l--~~~~Pi~n-~~~C~~CH~~~~~vLG~l~v~~sl~~~ 128 (134)
T 3b47_A 72 QAALTSGATAEKR---HKVDGRHVL--SFIVPLAN-EVRCQSCHEQGARFNGAMLLTTSLEEG 128 (134)
T ss_dssp HHHHHHTSCEEEE---EC---CCEE--EEEEEEEC-CTTGGGTSCTTCSEEEEEEEEEECSTT
T ss_pred HHHHhCCCeEEEE---EccCCcEEE--EEEEeccC-CCCchhhhCCCCeEEEEEEEEEchHhh
Confidence 3556566643221 256776543 45889999 7 88999999888776654
No 153
>3cwf_A Alkaline phosphatase synthesis sensor protein PHO; PAS domain, alkaline phosphatase synthesi protein PHOR, structural genomics, PSI-2; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=20.30 E-value=2.5e+02 Score=20.35 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=44.7
Q ss_pred HHHHHHHhhCCCeEEEEcCCCCCccEEEecHHHHHHhCCchhhhccCCCCCCCCCccchhHHHHHHHHHHhCCcceeeEE
Q 015216 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (411)
Q Consensus 18 ~~l~~l~e~~~~~i~i~d~~~~dg~i~~~N~~~~~l~G~~~eeliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (411)
..+..+.+....-|+++|.+ |+|++-+ + .. ..+... +.+++.++.. +
T Consensus 38 ~~l~~~~~~~~~rItiiD~~---G~Vl~dS-------~--~~------------~~~~~~----v~~al~~~~g-----r 84 (122)
T 3cwf_A 38 KIIKDAGGALDVSASVIDTD---GKVLYGS-------N--GR------------SADSQK----VQALVSGHEG-----I 84 (122)
T ss_dssp HHHHHHHHHHTCEEEEEETT---SCEEEET-------T--SS------------CCCHHH----HHHHHTTCCE-----E
T ss_pred HHHHHHHhhcCcEEEEECCC---CcEEEeC-------C--Cc------------ccchHH----HHHHHhcCCC-----e
Confidence 34555544555679999998 9999865 1 00 001111 6667765542 2
Q ss_pred EEccCCCeEEEEEEEEEeeecCCCeEEEEEEEeecccc
Q 015216 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (411)
Q Consensus 98 ~~~~dG~~~~~~~~~~pi~~~~~g~~~~~~~~~~DITe 135 (411)
.-...| . ...+.|+.+ +|.+.|++-+...+..
T Consensus 85 ~s~t~~-~---lyva~Pi~~--~~~~~Gvirv~~~~~~ 116 (122)
T 3cwf_A 85 LSTTDN-K---LYYGLSLRS--EGEKTGYVLLSASEKS 116 (122)
T ss_dssp CCC-CS-C---CEEEEEEEE--TTEEEEEEEEECC---
T ss_pred eeccCC-c---EEEEEEEee--CCeEEEEEEEEecccc
Confidence 222234 2 234788876 6788899888776654
Done!