BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015217
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 124/240 (51%), Gaps = 27/240 (11%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDA 88
V+ L NF + V + + VL+EFYAPWCGHC+ P +EK A +LK VA +DA
Sbjct: 17 VLVLNDANFDNFVADKD-TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKAT 148
LA + + G+PTIK+ G+ VDY+G+R +E + K
Sbjct: 76 TSASVLASRFDVSGYPTIKILKKGQA-VDYEGSR----------------TQEEIVAKVR 118
Query: 149 XXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK 208
++ L NFDE+V D+ +VEF+APWCGHCKKLAPE++KAA L
Sbjct: 119 EVSQPDWTPPPEVTLVLTKENFDEVV-NDADIILVEFYAPWCGHCKKLAPEYEKAAKELS 177
Query: 209 GK---VKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
+ + L VD +E L +F+V G+PT+ +F K P Y G R I + +EQ
Sbjct: 178 KRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFR--KGRPYDYNGPREKYGIVDYMIEQ 235
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHV 216
N + LN +NFD V KD ++EF+APWCGHCK+ APE++K AN LK K + + +
Sbjct: 15 NGVLVLNDANFDNFVA-DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 217 DCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN-VAPPEV 275
D S L S+F+V G+PTI + K + YEG+RT I + E + + PPEV
Sbjct: 74 DATSASVLASRFDVSGYPTIKILK--KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEV 131
Query: 276 TELTSQDVMEEKCGSAAICF 295
T + +++ +E A I
Sbjct: 132 TLVLTKENFDEVVNDADIIL 151
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
LY SS V++LTP+NF +V+ ++G+ LVEFYAPWCGHCQ LTP W+KAAT LK V V
Sbjct: 12 LYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG 71
Query: 85 ALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGARDVKPIAEFALQQIKA 137
A++A++HQSL +YG++GFPTIK+F K P DYQG R + I + AL +++
Sbjct: 72 AVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 77/109 (70%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ IEL SNF+ V++S LW+VEF+APWCGHC++L PEWKKAA LK VK+G V+ D
Sbjct: 17 DDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD 76
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLET 268
+SL ++ VQGFPTI +FGA+K+ P Y+G RT AI AL L +
Sbjct: 77 KHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRS 125
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 77/119 (64%), Gaps = 5/119 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL----KGKVKLGHVDC 218
IEL +FD+ VL S+D+W+VEF+APWCGHCK L PEW AA+ + KGKVKL VD
Sbjct: 10 IELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDA 69
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTE 277
+ L S++ ++GFPTI +F +SP+ Y+G RT I S AL+ N PPE+ E
Sbjct: 70 TVNQVLASRYGIRGFPTIKIF-QKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLE 127
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL----KGVAT 82
GSS V++LT ++F VL++ V +VEFYAPWCGHC+ L P W AA+ + KG
Sbjct: 4 GSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVK 63
Query: 83 VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ 133
+AA+DA +Q LA YGIRGFPTIK+F G+ PVDY G R I AL
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALD 114
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 38/253 (15%)
Query: 32 VVQLTPNNFKS--KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
VV LTP+ F K + V +V+FY+PW Q L P W++ A L G+ V ++D
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCG 604
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQ------GARDVKPIAEFALQQIKALLKERL 143
++ S + ++ +P I+ F P K YQ RD + + L L +
Sbjct: 605 QYHSFCTQENVQRYPEIR-FYPQKSSKAYQYHSYNGWNRDAYSLRSWGL----GFLPQ-- 657
Query: 144 SGKATXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKA 203
SI+L F+E VL+ K W+V+F+APW G + APE++
Sbjct: 658 -----------------ASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELL 700
Query: 204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK------DSPIPYEGARTAGA 257
A +KGKV+ G VDC + K ++ +P++ ++ ++ + I A+T A
Sbjct: 701 ARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAA 760
Query: 258 IESFALEQLETNV 270
+ LE L++ V
Sbjct: 761 LIYGKLETLQSQV 773
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 114/260 (43%), Gaps = 30/260 (11%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
+S V L P NF + + LV+F+APW +AL P KA+T+L G V LD
Sbjct: 439 NSHVTTLGPQNFPA---SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDC 495
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKAT 148
H+ L Y I+ +PT VF +Y+G + I EF E L +
Sbjct: 496 TIHEGLCNMYNIQAYPTTVVFNQSSIH-EYEGHHSAEQILEFI---------EDLRNPSV 545
Query: 149 XXXXXXXXXXXNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANN 206
+ L S F+ELV + K ++W+V+F++PW + L PEWK+ A
Sbjct: 546 --------------VSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMART 591
Query: 207 LKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266
L G + +G VDC S ++ NVQ +P I + Y + ++++L
Sbjct: 592 LTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYH-SYNGWNRDAYSLRSW 650
Query: 267 ETNVAPPEVTELTSQDVMEE 286
P +LT Q E+
Sbjct: 651 GLGFLPQASIDLTPQTFNEK 670
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 35/225 (15%)
Query: 16 FARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAAT 75
+ R++ +Y ++ L F + V N+ + V FY+P H L P W + A
Sbjct: 104 YYRYDF--GIYDDDPEIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAK 160
Query: 76 VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
+ G+ + A++ + + L + G+ +P++ +F G V Y G R + + FA+Q +
Sbjct: 161 EVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHV 220
Query: 136 KALLKERLSGKATXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKK 195
++ + E +G N N E + W++ F C K
Sbjct: 221 RSTVTELSTG--------------------NFVNAIETAFAAGVGWLITF-------CSK 253
Query: 196 ----LAPEWK-KAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235
L + + + + L G V +G VDCD++ SL + T
Sbjct: 254 GEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTT 298
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
E I L FD V S +LW V F++P H LAP W++ A + G +++G V+C
Sbjct: 117 EIITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGD 175
Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTS 280
++ L V +P++ +F + + + Y G R+ ++ +FA++ + + VTEL++
Sbjct: 176 DRMLCRMKGVNSYPSLFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRST-----VTELST 229
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 19/136 (13%)
Query: 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
Y S + +LTP +F + N N LVEFYAPWCGHC+ L+ + KAA L GV VA
Sbjct: 12 FYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVA 71
Query: 85 AL--DANEHQSLAQEYGIRGFPTIKVFVPGK----PPVD-------------YQGARDVK 125
A+ D N++++L +Y + GFPT+ VF P K P+D Y GAR +
Sbjct: 72 AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131
Query: 126 PIAEFALQQIKALLKE 141
PI +F+L +I++ +K+
Sbjct: 132 PIVDFSLSRIRSYVKK 147
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 70/125 (56%), Gaps = 18/125 (14%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--SE 221
EL +FD+ + + +VEF+APWCGHCKKL+ ++KAA L G V++ V+CD
Sbjct: 21 ELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80
Query: 222 KSLMSKFNVQGFPTILVF---GADKDSPIP-------------YEGARTAGAIESFALEQ 265
K+L +K++V GFPT++VF D PI Y GART I F+L +
Sbjct: 81 KALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140
Query: 266 LETNV 270
+ + V
Sbjct: 141 IRSYV 145
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 52/313 (16%)
Query: 30 SPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
S V++LT +NF+S++ + G++LVEF+APWCGH + L P +E AAT LKG+ +A +D
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 88 ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
+ + +YG+ G+PT+K+F G+ Y G R I +Q +G A
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ---------AGPA 111
Query: 148 TXXXXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL 207
S+ L + + + KD IV FF E+ KAA+NL
Sbjct: 112 --------------SVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHS---EFLKAASNL 154
Query: 208 KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-----KDSPIPY-EGARTAGAIESF 261
+ + H + + SL+++++ G IL + +D + Y E T+G I+ F
Sbjct: 155 RDNYRFAHTNVE---SLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKF 211
Query: 262 ALEQLETNVAPPEVTE------------LTSQDVMEEKCGSAAICFYLEMLLSVAEKFKR 309
E + P +TE + DV EK + ++ ++ VA+KF
Sbjct: 212 IQENIFGIC--PHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGS-NYWRNRVMMVAKKFLD 268
Query: 310 GHYSFVWAAAGKQ 322
+ +A A ++
Sbjct: 269 AGHKLNFAVASRK 281
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSL 224
+ NFDE+V ++EF+APWCGHCK L P++K+ L + + +D + +
Sbjct: 359 AENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDV 417
Query: 225 MSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAIESFALEQLETNVAPPEVTE 277
S + V+GFPTI A+K +P YEG R S+ L++ TN PP + E
Sbjct: 418 PSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY-LQREATN--PPVIQE 468
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT--VAA 85
+ PV + NF V N N VL+EFYAPWCGHC+ L P +++ L +A
Sbjct: 350 NDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAK 409
Query: 86 LDANEHQSLAQEYGIRGFPTIKVFVPGKP---PVDYQGARDV 124
+DA + + Y +RGFPTI F P P Y+G R++
Sbjct: 410 MDATAND-VPSPYEVRGFPTI-YFSPANKKLNPKKYEGGREL 449
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSE 221
++L + +F+E + +S DL + EFFAPWCGHCK +APE+ KAA L K + L +DC
Sbjct: 17 VKLATDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN 75
Query: 222 KSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIESFALEQLETNVA 271
+ L + N+ GFP++ +F +D ++ I YEG RTA AI F ++Q + VA
Sbjct: 76 QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVA 126
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 23 DALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAA-TVLKGVA 81
+A+ S VV+L ++F ++ + ++ +VL EF+APWCGHC+ + P + KAA T+++
Sbjct: 7 EAVAPEDSAVVKLATDSF-NEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNI 65
Query: 82 TVAALDANEHQSLAQEYGIRGFPTIKVFVPG--KPPVDYQGARDVKPIAEFALQQ 134
T+A +D E+Q L E+ I GFP++K+F +DY+G R + I +F ++Q
Sbjct: 66 TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 120
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 135 IKALLKERLSGKATXXXXXXXXXXXNES--IELNSSNFDELVLKSKDLWIVEFFAPWCGH 192
I++L+K+ L G A+ +S +L N DE+V K +V ++APWCGH
Sbjct: 331 IESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGH 390
Query: 193 CKKLAPEWKKAANNLKGKV------KLGHVDCDSEKSLMSKFNVQGFPTILVF-GADKDS 245
CK+LAP +++ A+ KL H + D + ++G+PTI+++ G K
Sbjct: 391 CKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVV-----IEGYPTIVLYPGGKKSE 445
Query: 246 PIPYEGARTAGAIESFALEQ 265
+ Y+G+R+ ++ F E
Sbjct: 446 SVVYQGSRSLDSLFDFIKEN 465
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---V 83
S V QL N V + VLV +YAPWCGHC+ L P +++ A + +
Sbjct: 355 NQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLI 414
Query: 84 AALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEF 130
A LD E+ + I G+PTI ++ GK V YQG+R + + +F
Sbjct: 415 AKLDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDF 461
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA---TV 83
GSS + LT +NF V NA+ ++LVEFYAPWCGHC+ L P +EKAA L + +
Sbjct: 4 GSSGVTLSLTKDNFDDVVNNAD-IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPL 62
Query: 84 AALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
A +DA E LA+ + + G+PT+K+F G+ P DY G R+ I ++ ++Q
Sbjct: 63 AKVDATEQTDLAKRFDVSGYPTLKIFRKGR-PFDYNGPREKYGIVDYMIEQ 112
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDC 218
++ L NFD++V + D+ +VEF+APWCGHCKKLAPE++KAA L + + L VD
Sbjct: 9 TLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 67
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
+ L +F+V G+PT+ +F K P Y G R I + +EQ
Sbjct: 68 TEQTDLAKRFDVSGYPTLKIF--RKGRPFDYNGPREKYGIVDYMIEQ 112
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV----LKGVAT 82
GSS V+ LT NNF + A G+ ++FYAPWCGHC+ L P WE+ + L GV
Sbjct: 4 GSSGTVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK- 60
Query: 83 VAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
+A +D +++ +Y +RG+PT+ +F GK ++ G RD+ + F L Q K
Sbjct: 61 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAK 114
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKAANNLKGKVKLGHVDC 218
+ L +NFD+ + ++ + ++F+APWCGHCK LAP W KK L G VK+ VDC
Sbjct: 10 LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 66
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
+E+++ SK++V+G+PT+L+F K + G R ++ F L Q
Sbjct: 67 TAERNICSKYSVRGYPTLLLFRGGKKVS-EHSGGRDLDSLHRFVLSQ 112
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 30 SPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
S V++LT +NF+S++ + G++LVEF+APWCGHC+ L P +E AAT LKG+ +A +D
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 88 ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
+ + +YG+ G+PT+K+F G+ Y G R I +Q
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ 107
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 160 NESIELNSSNFDELV--LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217
++ +EL NF+ + S L +VEFFAPWCGHCK+LAPE++ AA LKG V L VD
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVD 60
Query: 218 CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
C + + +K+ V G+PT+ +F D + Y+G RTA I S +Q
Sbjct: 61 CTANTNTCNKYGVSGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKKQ 107
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV----LKGVATVAALD 87
V+ LT NNF + A G+ ++FYAPWCGHC+ L P WE+ + L GV +A +D
Sbjct: 2 VLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK-IAEVD 58
Query: 88 ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136
+++ +Y +RG+PT+ +F GK ++ G RD+ + F L Q K
Sbjct: 59 CTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQAK 107
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKAANNLKGKVKLGHVDC 218
+ L +NFD+ + ++ + ++F+APWCGHCK LAP W KK L G VK+ VDC
Sbjct: 3 LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 59
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
+E+++ SK++V+G+PT+L+F K + G R ++ F L Q
Sbjct: 60 TAERNICSKYSVRGYPTLLLFRGGKKVS-EHSGGRDLDSLHRFVLSQ 105
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 6/101 (5%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDA 88
V+ L +NF ++ L A+ +LVEFYAPWCGHC+AL P + KAA LK + +A +DA
Sbjct: 9 VLVLRKSNF-AEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGK--PPVDYQGARDVKPI 127
E LAQ+YG+RG+PTIK F G P +Y R+ I
Sbjct: 68 TEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDI 108
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE 221
L SNF E + K L +VEF+APWCGHCK LAPE+ KAA LK +++L VD E
Sbjct: 12 LRKSNFAEALAAHKYL-LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 222 KSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAI 258
L ++ V+G+PTI F D SP Y R A I
Sbjct: 71 SDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDI 108
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 7/109 (6%)
Query: 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV----LKGVATVAA 85
S V+ LT NNF + A G+ ++FYAPWCGHC+ L P WE+ + L GV +A
Sbjct: 5 STVLALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK-IAE 61
Query: 86 LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134
+D +++ +Y +RG+PT+ +F GK ++ G RD+ + F L Q
Sbjct: 62 VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ 110
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW----KKAANNLKGKVKLGHVDC 218
+ L +NFD+ + ++ + ++F+APWCGHCK LAP W KK L G VK+ VDC
Sbjct: 8 LALTENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 64
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
+E+++ SK++V+G+PT+L+F K + G R ++ F L Q
Sbjct: 65 TAERNICSKYSVRGYPTLLLFRGGKKVS-EHSGGRDLDSLHRFVLSQ 110
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSE 221
LN NFD V KD ++EF+APWCGHCK+ APE++K A+ LK + + +D S
Sbjct: 22 LNDGNFDNFVA-DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN-VAPPEVT 276
L SKF+V G+PTI + K + Y+G+RT I + E + + PPEVT
Sbjct: 81 SMLASKFDVSGYPTIKILK--KGQAVDYDGSRTQEEIVAKVREVSQPDWTPPPEVT 134
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH 91
L NF + V + + VL+EFYAPWCGHC+ P +EK A+ LK VA +DA
Sbjct: 22 LNDGNFDNFVADKD-TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA 80
Query: 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
LA ++ + G+PTIK+ G+ VDY G+R
Sbjct: 81 SMLASKFDVSGYPTIKILKKGQ-AVDYDGSR 110
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (60%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCGHC+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCGHCK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 70
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKA 147
+++ A +YGIRG PT+ +F G+ GA + Q+K L L+G A
Sbjct: 71 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA--------LSKGQLKEFLDANLAGSA 121
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 15 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 74
Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF--------ALEQ----LETNV 270
K+ ++G PT+L+F + + GA + G ++ F A+E L V
Sbjct: 75 GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLAGSAMESTVMVLRNMV 133
Query: 271 APPEVTELTSQDVMEEKCG 289
P ++ + +V EE CG
Sbjct: 134 DPKDIDDDLEGEVTEE-CG 151
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
SI+L F+E VL+ K W+V+F+APWCG C+ APE++ A +KGKV+ G VDC +
Sbjct: 5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY 64
Query: 222 KSLMSKFNVQGFPTILVFGADK------DSPIPYEGARTAGAIESFALEQLETNV 270
K ++ +P++ ++ ++ + I A+T A+ LE L++ V
Sbjct: 65 PQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQV 119
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
+ LTP F KVL +V+FYAPWCG CQ P +E A ++KG +D +
Sbjct: 6 IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP 65
Query: 93 SLAQEYGIRGFPTIKVF 109
Q+ GI+ +P++K++
Sbjct: 66 QTCQKAGIKAYPSVKLY 82
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI E+ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP ++ A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVA--TVA 84
GSS PV + F + V++ VL+EFYAPWCGHC+ L PI+ KG +A
Sbjct: 4 GSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63
Query: 85 ALDANEHQSLAQEYGIRGFPTIKVFVPG---KPPVDYQGA-RDVKPIAEFALQQI--KAL 138
+DA + +Y + GFPTI F P K P+ ++G RD++ +++F + ++
Sbjct: 64 KMDATANDITNDQYKVEGFPTI-YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSR 122
Query: 139 LKERLSGKAT 148
KE LSG ++
Sbjct: 123 TKEELSGPSS 132
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL--GHVDCDSEKSLMS 226
FD +V+ K ++EF+APWCGHCK+L P + KG+ L +D +
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 227 KFNVQGFPTI-LVFGADKDSPIPYEGA 252
++ V+GFPTI DK +PI +EG
Sbjct: 76 QYKVEGFPTIYFAPSGDKKNPIKFEGG 102
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 62/102 (60%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F++ VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +F+ VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG C+ +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A++ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 65 GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI + A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEF 102
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + D GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGDVAATKVGALSKGQLKEF----LDANLA 108
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 61
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 62 DQNPGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEF 103
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 62
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 63 QNPGTAPKYGIRGTPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 109
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEF 102
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVF 239
K+ ++G PT+L+F
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF 81
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT +F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+ +++
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
A +YGIRG PT+ +F G+ GA + EF
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ +T ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I + +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
+++ A +YGIRG PT+ +F G+ GA
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKCF----LDANLA 108
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
+++ A +YGIRG PT+ +F G+ GA
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 93
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 5 IHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP 64
Query: 223 SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 65 GTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKCF----LDCNLA 108
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIR PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++ PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRSIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + I ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG CK +A + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEK-----AATVLKGVA 81
GS PV + N+ VL+ VL+EFYAPWCGHC+AL P +E+ A + K
Sbjct: 4 GSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRV 63
Query: 82 TVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGARDVKPIAEFALQQIK 136
+A +DA + + I+GFPTIK++ G PV Y G+R V+ + +F + K
Sbjct: 64 VIAKVDATANDVPDE---IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKK-----AANNLKGKVKLGHVDCDSE 221
+ N++E+VL ++EF+APWCGHCK LAP++++ A + K +V + VD +
Sbjct: 14 AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN 73
Query: 222 KSLMSKFNVQGFPTILVFGAD-KDSPIPYEGARTAGAIESFALEQ 265
+QGFPTI ++ A K P+ Y G+RT + F E
Sbjct: 74 D---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WC C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WC CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKGVATVAALD 87
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLN 60
Query: 88 ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 IDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 103
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKGKVKLGHVDC 218
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+ +GK+ + ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNI 61
Query: 219 DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
D K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 DQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 109
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG + + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG K +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WCG + + PI ++ A +G TVA L+
Sbjct: 21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 81 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 122
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WCG K +AP + A+ +GK+ + ++ D
Sbjct: 22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNID 81
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 82 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 128
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
E I L FD V S +LW V F++P C HC LAP W++ A + G +++G V+C
Sbjct: 98 EIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGD 156
Query: 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTS 280
++ L V +P++ +F + + + Y G R+ ++ +FA++ + + VTEL++
Sbjct: 157 DRMLCRMKGVNSYPSLFIFRSGM-AAVKYNGDRSKESLVAFAMQHVRST-----VTELST 210
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 16 FARFNLSDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAAT 75
+ R++ +Y ++ L F + V N+ + V FY+P C HC L P W + A
Sbjct: 85 YYRYDF--GIYDDDPEIITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAK 141
Query: 76 VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
+ G+ + A++ + + L + G+ +P++ +F G V Y G R + + FA+Q +
Sbjct: 142 EVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHV 201
Query: 136 KALLKE 141
++ + E
Sbjct: 202 RSTVTE 207
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATV 83
S + L N ++LN V LV FYA WC Q L PI+E+A+ V+K
Sbjct: 5 SEITSLDTENI-DEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 84 AALDANEHQSLAQEYGIRGFPTIKVFVPG-KPPVDYQGARDVKPIAEFALQQIKALLKE 141
A +D ++H +AQ Y I +PT+K+F G +Y+G R VK +A++ QQ ++E
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQE 122
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK------GKVKL 213
+E L++ N DE +L + D+ +V F+A WC + L P +++A++ +K +V
Sbjct: 5 SEITSLDTENIDE-ILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 214 GHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265
VDCD + ++ + +PT+ +F Y G R+ A+ + +Q
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 59/102 (57%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + VL A+G +LV+F+A WC + + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD VLK+ +V+F+A WC K +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ ++G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
GSS PV L NF+ + V VEFYAPWCGHC+ L PIW+K K +
Sbjct: 4 GSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 63
Query: 87 DANEHQSLAQEYGIRGFPTIKVF--VPGKPPVDYQGARDVKPIAEF 130
+ + + + FPT+K F + +DY G R + +F
Sbjct: 64 KMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 109
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
L NF+++ K VEF+APWCGHCK+LAP W K K + DS +
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 225 MSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAIESF 261
+ V FPT+ F A D + I Y G RT + F
Sbjct: 72 VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 109
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
GS +V++T +F SKV +GV LV+F+A WCG C+ + P+ E+ A +G A + L
Sbjct: 1 GSHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKL 58
Query: 87 DANEHQSLAQEYGIRGFPTIKVFVPGKP 114
D +E+ S A +Y + PT+ VF G+P
Sbjct: 59 DVDENPSTAAKYEVMSIPTLIVFKDGQP 86
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
+++ ++FD V + +V+F+A WCG CK +AP ++ A + +GK + +D D
Sbjct: 7 VKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 223 SLMSKFNVQGFPTILVF 239
S +K+ V PT++VF
Sbjct: 65 STAAKYEVMSIPTLIVF 81
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S ++ LT ++F + ++ A+G +LV+F+A WCG C+ + PI ++ A +G TVA L+
Sbjct: 1 SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+++ A +Y RG PT+ +F G+ GA + EF
Sbjct: 61 DQNPGTAPKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEF 102
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219
++ I L +FD ++K+ +V+F+A WCG CK +AP + A+ +GK+ + ++ D
Sbjct: 2 DKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 220 SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVA 271
K+ +G PT+L+F + + GA + G ++ F L+ N+A
Sbjct: 62 QNPGTAPKYIERGIPTLLLF-KNGEVAATKVGALSKGQLKEF----LDANLA 108
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH--------------CQALTPIWEKAA 74
S ++ LT ++F + VL A+G +LV+F+A WCG C+ + PI ++ A
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 75 TVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+G TVA L+ +++ A +YGIRG PT+ +F G+ GA + EF
Sbjct: 62 DEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 117
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGH--------------CKKLAPEWKKAAN 205
++ I L +FD VLK+ +V+F+A WCG CK +AP + A+
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
+GK+ + ++ D K+ ++G PT+L+F
Sbjct: 63 EYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 96
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
GS +V++T +F SKV +GV LV+F+A WCG C+ + P+ E+ A +G A + L
Sbjct: 1 GSHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKL 58
Query: 87 DANEHQSLAQEYGIRGFPTIKVFVPGKP 114
D +E+ S A +Y + PT+ VF G+P
Sbjct: 59 DVDENPSTAAKYEVMSIPTLIVFKDGQP 86
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
+++ ++FD V + +V+F+A WCG CK +AP ++ A + +GK + +D D
Sbjct: 7 VKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 223 SLMSKFNVQGFPTILVF 239
S +K+ V PT++VF
Sbjct: 65 STAAKYEVMSIPTLIVF 81
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
V+++T NF+ +VL ++ VLV+F+APWCG C+ + PI E+ A +G V ++ +E+
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62
Query: 92 QSLAQEYGIRGFPTIKVFVPGK 113
+ A +YGIR PT+ +F G+
Sbjct: 63 PNTAAQYGIRSIPTLLLFKNGQ 84
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
IE+ NF++ VLKS +V+F+APWCG C+ +AP ++ A +GKVK+ V+ D
Sbjct: 4 IEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
+ +++ ++ PT+L+F
Sbjct: 64 NTAAQYGIRSIPTLLLF 80
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
PV L NF+ + V VEFYAPWCGHC+ L PIW+K K + +
Sbjct: 250 PVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS 309
Query: 91 HQSLAQEYGIRGFPTIKVF--VPGKPPVDYQGARDVKPIAEF 130
+ + + FPT+K F + +DY G R + +F
Sbjct: 310 TANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 351
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
L NF+++ K VEF+APWCGHCK+LAP W K K + DS +
Sbjct: 254 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 225 MSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAIESF 261
+ V FPT+ F A D + I Y G RT + F
Sbjct: 314 VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKF 351
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S +V++T +F SKV +GV LV+F+A WCG C+ + P+ E+ A +G A + LD
Sbjct: 2 SHAIVKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDV 59
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKP 114
+E+ S A +Y + PT+ VF G+P
Sbjct: 60 DENPSTAAKYEVMSIPTLIVFKDGQP 85
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
+++ ++FD V + +V+F+A WCG CK +AP ++ A + +GK + +D D
Sbjct: 6 VKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
S +K+ V PT++VF
Sbjct: 64 STAAKYEVMSIPTLIVF 80
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
GS +V++T +F SKV +GV LV+F+A WCG + + P+ E+ A +G A + L
Sbjct: 1 GSHMAIVKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKL 58
Query: 87 DANEHQSLAQEYGIRGFPTIKVFVPGKP 114
D +E+ S A +Y + PT+ VF G+P
Sbjct: 59 DVDENPSTAAKYEVMSIPTLIVFKDGQP 86
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
+++ ++FD V + +V+F+A WCG K +AP ++ A + +GK + +D D
Sbjct: 7 VKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENP 64
Query: 223 SLMSKFNVQGFPTILVF 239
S +K+ V PT++VF
Sbjct: 65 STAAKYEVMSIPTLIVF 81
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT--VAA 85
+ PV + NF V N N VL+EFYAPWCGHC+ L P +++ L +A
Sbjct: 25 NDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAK 84
Query: 86 LDANEHQSLAQEYGIRGFPTIKVFVPGKP---PVDYQGARDVKPIAEFALQQIKALLKER 142
+DA + + Y +RGFPTI F P P Y+G R+ +++F I L +E
Sbjct: 85 MDATAND-VPSPYEVRGFPTI-YFSPANKKLNPKKYEGGRE---LSDF----ISYLQREA 135
Query: 143 LSGKAT 148
SG ++
Sbjct: 136 TSGPSS 141
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 167 SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLM 225
+ NFDE+V ++EF+APWCGHCK L P++K+ L + D + +
Sbjct: 34 AENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP 93
Query: 226 SKFNVQGFPTILVFGADKD-SPIPYEGAR 253
S + V+GFPTI A+K +P YEG R
Sbjct: 94 SPYEVRGFPTIYFSPANKKLNPKKYEGGR 122
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE 97
+ FK+ VL ++ VLV+F+APWCG C+ + P+ ++ A K L+ +E ++A E
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE 68
Query: 98 YGIRGFPTIKVFVPGK 113
YGIR PTI VF GK
Sbjct: 69 YGIRSIPTIMVFKGGK 84
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
E+ +N F +VL+S +V+F+APWCG C+ +AP + A K K+K ++ D
Sbjct: 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
Query: 221 EKSLMSKFNVQGFPTILVFGADK 243
++ S++ ++ PTI+VF K
Sbjct: 62 SPNVASEYGIRSIPTIMVFKGGK 84
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---V 80
ALY S P+ L + + VL + VEF+A WCGHC A P W A +K
Sbjct: 6 ALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPA 65
Query: 81 ATVAALDANE--HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKAL 138
+AALD E + ++ +++ I GFPT++ F G+ V P+A +Q ++
Sbjct: 66 LYLAALDCAEETNSAVCRDFNIPGFPTVRFFX----AFTXNGSGAVFPVAGADVQTLRER 121
Query: 139 LKERL 143
L + L
Sbjct: 122 LIDAL 126
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDC--DSEKSLMSKF 228
VL S+ W VEFFA WCGHC AP W A ++K + L +DC ++ ++ F
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDF 85
Query: 229 NVQGFPTILVFGA 241
N+ GFPT+ F A
Sbjct: 86 NIPGFPTVRFFXA 98
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
S +++T +F + VL++N VLV+F+A WCG C+ + P+ E+ AT TVA LD +
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 71
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+ A+ + + PT+ +F G+P GA+
Sbjct: 72 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 104
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
+I++ ++F VL S +V+F+A WCG CK +AP ++ A + + +D D+
Sbjct: 14 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 73
Query: 222 KSLMSKFNVQGFPTILVF 239
F V PT+++F
Sbjct: 74 PETARNFQVVSIPTLILF 91
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
S +++T +F + VL++N VLV+F+A WCG C+ + P+ E+ AT TVA LD +
Sbjct: 7 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD 66
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+ A+ + + PT+ +F G+P GA+
Sbjct: 67 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
+I++ ++F VL S +V+F+A WCG CK +AP ++ A + + +D D+
Sbjct: 9 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 68
Query: 222 KSLMSKFNVQGFPTILVF 239
F V PT+++F
Sbjct: 69 PETARNFQVVSIPTLILF 86
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDC--D 219
L++ + VL S W VEFFA WCGH AP WK+ AN++K + L +DC +
Sbjct: 17 LDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEE 76
Query: 220 SEKSLMSKFNVQGFPTILVFGA 241
+ ++ +FN+ GFPT+ F A
Sbjct: 77 TNSAVCREFNIAGFPTVRFFQA 98
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VA 81
LY SS P+ L ++ + VL ++ VEF+A WCGH A P W++ A +K
Sbjct: 7 LYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPAL 66
Query: 82 TVAALDANE--HQSLAQEYGIRGFPTIKVF 109
+A LD E + ++ +E+ I GFPT++ F
Sbjct: 67 NLAVLDCAEETNSAVCREFNIAGFPTVRFF 96
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
VV+ F +V A + LV+F+APWCG C+ ++PI E+ A G V ++ +EH
Sbjct: 35 VVEADEKGFAQEVAGAP-LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEH 93
Query: 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
LA YG+R PT+ +F G P + GA
Sbjct: 94 PGLAARYGVRSVPTLVLFRRGAPVATWVGA 123
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
+E + F + V L +V+FFAPWCG C+ ++P ++ A + G++K+ V+ D
Sbjct: 36 VEADEKGFAQEV-AGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP 94
Query: 223 SLMSKFNVQGFPTILVF 239
L +++ V+ PT+++F
Sbjct: 95 GLAARYGVRSVPTLVLF 111
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
LT NF +V+ N +VLV+ +A WC C PI++K A KG A L+ +E+Q +
Sbjct: 9 LTEENF-DEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI 67
Query: 95 AQEYGIRGFPTIKVFVPGKPPVDYQGARD 123
A +Y + PT +FV G+ GA D
Sbjct: 68 ADKYSVLNIPTTLIFVNGQLVDSLVGAVD 96
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
++ L NFDE V+++ L +V+ +A WC C P +KK A KGK G ++ D
Sbjct: 6 TLVLTEENFDE-VIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN 64
Query: 222 KSLMSKFNVQGFPTILVF 239
+ + K++V PT L+F
Sbjct: 65 QKIADKYSVLNIPTTLIF 82
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
S +V++T +F SKV +GV LV+F+A CG C+ + P+ E+ A +G A + LD
Sbjct: 1 SHMAIVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLD 58
Query: 88 ANEHQSLAQEYGIRGFPTIKVFVPGKP 114
+E+ S A +Y + PT+ VF G+P
Sbjct: 59 VDENPSTAAKYEVMSIPTLIVFKDGQP 85
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
+++ ++FD V + +V+F+A CG CK +AP ++ A + +GK + +D D
Sbjct: 6 VKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
S +K+ V PT++VF
Sbjct: 64 STAAKYEVMSIPTLIVF 80
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
L + D+L L +V+F+APWCG C+++AP+++ AA L G+V+L +D + ++
Sbjct: 57 LARAERDDLPL------LVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAV 110
Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
+ +QG P ++F + E AR AGA
Sbjct: 111 AGRHRIQGIPAFILFHKGR------ELARAAGA 137
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110
+LV+F+APWCG C+ + P ++ AA L G +A +D H ++A + I+G P +F
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 111 PGKPPVDYQGARDVKPIAEFALQQIKA 137
G+ GAR + F ++ A
Sbjct: 127 KGRELARAAGARPASELVGFVRGKLGA 153
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
++N S++ E VL+S+ +V+F+APWCG CK +AP + A GK+ + ++ D
Sbjct: 4 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 224 LMSKFNVQGFPTILVF--GADKDSPI 247
+ +++N++ PT+L F G K+S I
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKESII 89
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
V + +++K VL + V+V+F+APWCG C+ + P+ ++ A G V L+ +E
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 92 QSLAQEYGIRGFPTIKVFVPGK 113
+A +Y IR PT+ F G+
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGE 83
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
++N S++ E VL+S+ +V+F+APWCG CK +AP + A GK+ + ++ D
Sbjct: 3 DVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 224 LMSKFNVQGFPTILVF--GADKDSPI 247
+ +++N++ PT+L F G K+S I
Sbjct: 63 IATQYNIRSIPTVLFFKNGERKESII 88
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE 97
+++K VL + V+V+F+APWCG C+ + P+ ++ A G V L+ +E +A +
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 98 YGIRGFPTIKVFVPGK 113
Y IR PT+ F G+
Sbjct: 67 YNIRSIPTVLFFKNGE 82
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%)
Query: 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
S +++T +F + VL++N VLV+F+A WCG + + P+ E+ AT TVA LD +
Sbjct: 9 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVD 68
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+ A+ + + PT+ +F G+P GA+
Sbjct: 69 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 101
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
+I++ ++F VL S +V+F+A WCG K +AP ++ A + + +D D+
Sbjct: 11 TIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTN 70
Query: 222 KSLMSKFNVQGFPTILVF 239
F V PT+++F
Sbjct: 71 PETARNFQVVSIPTLILF 88
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 61.2 bits (147), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
GS++ +Q P+ F+ +V+N+ V+V+F+A WCG C+ L P EK G +A +
Sbjct: 11 GSTTFNIQDGPD-FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKV 69
Query: 87 DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
D ++H LA EY + PT+ G + G +D + F
Sbjct: 70 DIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAF 113
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
+ +F + V+ S+ +V+F A WCG CK L P +K GKV + VD D L
Sbjct: 19 DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLA 78
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261
++ V PT+L + D + G + +E+F
Sbjct: 79 IEYEVSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAF 113
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
LT NF+ + + +G VLV+F+A WCG C+ + P+ E+ A TVA L+ +E+
Sbjct: 5 LTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95 AQEYGIRGFPTIKVFVPGKP 114
++GI PT+ +F G+P
Sbjct: 64 TSQFGIMSIPTLILFKGGRP 83
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
++ L +NF + + + +V+F+A WCG C+ +AP ++ A KV + ++ D
Sbjct: 2 TMTLTDANFQQAIQGDGPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
S+F + PT+++F
Sbjct: 61 PETTSQFGIMSIPTLILF 78
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
LT NF+ + + +G VLV+F+A WCG C+ + P+ E+ A TVA L+ +E+
Sbjct: 5 LTDANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95 AQEYGIRGFPTIKVFVPGKP 114
++GI PT+ +F G+P
Sbjct: 64 TSQFGIMSIPTLILFKGGEP 83
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
++ L +NF + + + +V+F+A WCG C+ +AP ++ A KV + ++ D
Sbjct: 2 TMTLTDANFQQAIQGDGPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
S+F + PT+++F
Sbjct: 61 PETTSQFGIMSIPTLILF 78
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
+++T NF + L + +VLV+F+A WC C+ + PI E+ A +G VA LD +E+
Sbjct: 5 IEVTDQNF-DETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
Query: 93 SLAQEYGIRGFPTIKVFVPGKP 114
A Y + PT+ +F G+P
Sbjct: 64 KTAXRYRVXSIPTVILFKDGQP 85
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
IE+ NFDE L L +V+F+A WC C+ +AP ++ A +GK+ + +D D
Sbjct: 5 IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
Query: 223 SLMSKFNVQGFPTILVF 239
++ V PT+++F
Sbjct: 64 KTAXRYRVXSIPTVILF 80
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92
+++T NF + L + +VLV+F+A WC C+ + PI E+ A +G VA LD +E+
Sbjct: 4 IEVTDQNF-DETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 93 SLAQEYGIRGFPTIKVFVPGKP 114
A Y + PT+ +F G+P
Sbjct: 63 KTAXRYRVXSIPTVILFKDGQP 84
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
IE+ NFDE L L +V+F+A WC C+ +AP ++ A +GK+ + +D D
Sbjct: 4 IEVTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 223 SLMSKFNVQGFPTILVF 239
++ V PT+++F
Sbjct: 63 KTAXRYRVXSIPTVILF 79
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 32 VVQLTPNNFKSKVLN-----------ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV 80
V+ LT F +KV N + +V+FYA WCG C+ + PI ++ A G
Sbjct: 11 VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ 70
Query: 81 ATVAALDANEHQSLAQEYGIRGFPTIKVFVP--GKPPVDYQGARD----VKPIAEFALQQ 134
+ +D + Q LA +GIR P+I +F+P GKP + QGA K I EF L++
Sbjct: 71 IVIYKVDTEKEQELAGAFGIRSIPSI-LFIPMEGKPEM-AQGAMPKASFKKAIDEFLLKK 128
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241
IV+F+A WCG CK +AP + A G++ + VD + E+ L F ++ P+IL
Sbjct: 42 IVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF--- 98
Query: 242 DKDSPIPYEG 251
IP EG
Sbjct: 99 -----IPMEG 103
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
+V+ T +F ++ + GVVL +F+APWCG C+ + P+ E+ + + +D +E+
Sbjct: 3 IVKATDQSFSAE--TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 92 QSLAQEYGIRGFPTIKVFVPGK 113
Q A +YG+ PT+ V G+
Sbjct: 61 QETAGKYGVMSIPTLLVLKDGE 82
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
S+ + + +F+APWCG CK +AP ++ + K+K+ +D D + K+ V PT+
Sbjct: 16 SEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 237 LVF 239
LV
Sbjct: 76 LVL 78
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
++N S++ E VL+S+ +V+F+APWCG K +AP + A GK+ + ++ D
Sbjct: 4 DVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 224 LMSKFNVQGFPTILVF--GADKDSPI 247
+ +++N++ PT+L F G K+S I
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKESII 89
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
V + +++K VL + V+V+F+APWCG + + P+ ++ A G V L+ +E
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEA 61
Query: 92 QSLAQEYGIRGFPTIKVFVPGK 113
+A +Y IR PT+ F G+
Sbjct: 62 PGIATQYNIRSIPTVLFFKNGE 83
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
LT NF+ + + + VLV+F+A WCG C+ + P+ E+ A TVA L+ +E+
Sbjct: 5 LTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95 AQEYGIRGFPTIKVFVPGKP 114
++GI PT+ +F G+P
Sbjct: 64 TSQFGIMSIPTLILFKGGRP 83
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
++ L +NF + + K + +V+F+A WCG C+ +AP ++ A KV + ++ D
Sbjct: 2 TMTLTDANFQQAIQGDKPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
S+F + PT+++F
Sbjct: 61 PETTSQFGIMSIPTLILF 78
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
LT NF+ + + + VLV+F+A WCG C+ + P+ E+ A TVA L+ +E+
Sbjct: 5 LTDANFQ-QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET 63
Query: 95 AQEYGIRGFPTIKVFVPGKP 114
++GI PT+ +F G+P
Sbjct: 64 TSQFGIMSIPTLILFKGGEP 83
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
++ L +NF + + K + +V+F+A WCG C+ +AP ++ A KV + ++ D
Sbjct: 2 TMTLTDANFQQAIQGDKPV-LVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDEN 60
Query: 222 KSLMSKFNVQGFPTILVF 239
S+F + PT+++F
Sbjct: 61 PETTSQFGIMSIPTLILF 78
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
PV L NF + + N +V+V+F+A WC C L P+ E+ A VA L+ E
Sbjct: 7 PVKHLNSKNF-DEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQVA-FGKLNTEE 64
Query: 91 HQSLAQEYGIRGFPTIKVFVPGK 113
Q +A YGI PTI F G+
Sbjct: 65 SQDIAMRYGIMSLPTIMFFKNGE 87
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
LNS NFDE + K+K + +V+F+A WC C LAP ++ AN+ +V G ++ + + +
Sbjct: 11 LNSKNFDEFITKNK-IVVVDFWAEWCAPCLILAPVIEELANDY-PQVAFGKLNTEESQDI 68
Query: 225 MSKFNVQGFPTILVF 239
++ + PTI+ F
Sbjct: 69 AMRYGIMSLPTIMFF 83
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
+V+ T +F ++ + GVVL +F+APWCG + + P+ E+ + + +D +E+
Sbjct: 3 IVKATDQSFSAE--TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 92 QSLAQEYGIRGFPTIKVFVPGK 113
Q A +YG+ PT+ V G+
Sbjct: 61 QETAGKYGVMSIPTLLVLKDGE 82
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
S+ + + +F+APWCG K +AP ++ + K+K+ +D D + K+ V PT+
Sbjct: 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 237 LVF 239
LV
Sbjct: 76 LVL 78
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
+V+ T +F ++ + GVVL +F+APWCG + + P+ E+ + + +D +E+
Sbjct: 3 IVKATDQSFSAE--TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDEN 60
Query: 92 QSLAQEYGIRGFPTIKVFVPGK 113
Q A +YG+ PT+ V G+
Sbjct: 61 QETAGKYGVMSIPTLLVLKDGE 82
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
S+ + + +F+APWCG K +AP ++ + K+K+ +D D + K+ V PT+
Sbjct: 16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 237 LVF 239
LV
Sbjct: 76 LVL 78
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S + ++ ++F VL A+G+VLV+F+A WCG C+ + P + G TVA ++
Sbjct: 1 SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGK 113
+++ Y +R PT+ + GK
Sbjct: 61 DDNPETPNAYQVRSIPTLMLVRDGK 85
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
++ ++ S+FD+ VLK+ L +V+F+A WCG CK + P + GKV + V+ D
Sbjct: 3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD 62
Query: 221 EKSLMSKFNVQGFPTILV 238
+ + V+ PT+++
Sbjct: 63 NPETPNAYQVRSIPTLML 80
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
E I + D+L L+ +++F+APWCG C+ AP + + A GKV+ V+ ++
Sbjct: 39 EVINATAETLDKL-LQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 221 EKSLMSKFNVQGFPTILVF 239
E +L ++F ++ PTI ++
Sbjct: 98 EPALSTRFRIRSIPTIXLY 116
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRG 102
K+L + +++F+APWCG C++ PI+ + A G ++ +L+ + IR
Sbjct: 50 KLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRS 109
Query: 103 FPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135
PTI ++ GK GA P + +Q+
Sbjct: 110 IPTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQL 142
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88
S V+ +T F+S+VL A VLV F+A WCG CQ ++P+ AA V L+
Sbjct: 6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65
Query: 89 NEHQSLAQEYGIRGFPTIKVFVPGKPPVD 117
+ + + ++Y + G P ++ V G+ +D
Sbjct: 66 DPNPTTVKKYKVEGVPALR-LVKGEQILD 93
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
I + + F+ VLK++ +V F+A WCG C+ ++P AAN ++K+ ++ D
Sbjct: 10 ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP 69
Query: 223 SLMSKFNVQGFPTILVFGADK--DSPIPYEGARTAGAIESFALEQLETN 269
+ + K+ V+G P + + ++ DS EG + + SF L N
Sbjct: 70 TTVKKYKVEGVPALRLVKGEQILDST---EGVISKDKLLSFLDTHLNNN 115
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110
VL F++ HC LTPI E A G +A LD + Q +A ++G+R PT+ +F
Sbjct: 29 VLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQ 88
Query: 111 PGKPPVDYQG 120
G+P +QG
Sbjct: 89 NGQPVDGFQG 98
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
+ +N SN +++ +S ++ +F + HC +L P + A G+ L +DCD+E
Sbjct: 10 VNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAE 69
Query: 222 KSLMSKFNVQGFPTILVFGADKDSPIP-YEGARTAGAIESFALEQLETNVAPPEVTELTS 280
+ + ++F ++ PT+ +F P+ ++G + AI + + P EL +
Sbjct: 70 QMIAAQFGLRAIPTVYLF--QNGQPVDGFQGPQPEEAIRAL------LDXVLPREEELXA 121
Query: 281 QDVME 285
Q M+
Sbjct: 122 QQAMQ 126
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 28 SSSPVVQLTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
S +V + +N + + + VL F++ HC LTP+ E A G +A L
Sbjct: 5 SVQNIVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKL 64
Query: 87 DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG 120
D + Q +A ++G+R PT+ +F G+P +QG
Sbjct: 65 DCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQG 98
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221
+ +N SN + + +S ++ +F + HC +L P + A G+ L +DCD+E
Sbjct: 10 VNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAE 69
Query: 222 KSLMSKFNVQGFPTILVFGADK-----DSPIPYEGAR 253
+ + ++F ++ PT+ +F + P P E R
Sbjct: 70 QXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIR 106
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS 93
+T ++F+ VL + VLV+F+A WCG C+ + P E A + L+ +E+
Sbjct: 9 HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG 68
Query: 94 LAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
A +YG+ PT+ V+ G+ GA+
Sbjct: 69 TAAKYGVMSIPTLNVYQGGEVAKTIVGAK 97
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS 223
+ +F++ VLK+ +V+F+A WCG C+++AP + A K+++ ++ D
Sbjct: 9 HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG 68
Query: 224 LMSKFNVQGFPTILVF 239
+K+ V PT+ V+
Sbjct: 69 TAAKYGVMSIPTLNVY 84
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVAT-VAALDANEHQSLAQ 96
+ FK +V + VV+++F+A WCG C+ + P++EK + G +D +E +AQ
Sbjct: 24 DQFK-QVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQ 82
Query: 97 EYGIRGFPTIKVFVPGK 113
E GIR PT F G+
Sbjct: 83 EVGIRAMPTFVFFKNGQ 99
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 168 SNFDEL--VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSL 224
S++D+ V + +++F+A WCG CK + P ++K ++ G KV VD D + +
Sbjct: 21 SSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQI 80
Query: 225 MSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAI 258
+ ++ PT + F G D+ + + ++ AI
Sbjct: 81 AQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAI 116
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111
+V+FYA WCG C+ + PI E+ + G + ++ ++ LA+++GI+G PTI FVP
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI-WFVP 113
Query: 112 --GKPPVD 117
G+P V+
Sbjct: 114 MKGEPQVN 121
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
IV+F+A WCG CK +AP ++ + GK+ + V+ D E L F +QG PTI
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 44/75 (58%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
L+ S+F V + D I+ F WC CKK+ P +++ A+ ++G ++ ++D + +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 225 MSKFNVQGFPTILVF 239
M++ N++ P++ +F
Sbjct: 64 MAELNIRTLPSLALF 78
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL 94
L+ ++F+ +V +++ F WC C+ + P +E+ A+ ++G A +DA + +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKT 63
Query: 95 AQEYGIRGFPTIKVFVPG 112
E IR P++ +FV G
Sbjct: 64 MAELNIRTLPSLALFVDG 81
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91
V+ L NF S L ++ + +V+F+A WC C L PI E+ A V L+++E+
Sbjct: 1 VIHLDSKNFDS-FLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVG-FGKLNSDEN 58
Query: 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKE 141
+A YG+ PT+ F G+P + GA P E + +IK LL E
Sbjct: 59 PDIAARYGVMSLPTVIFFKDGEPVDEIIGA---VPREEIEI-RIKNLLGE 104
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
I L+S NFD L S ++ +V+F+A WC C LAP ++ A + +V G ++ D
Sbjct: 2 IHLDSKNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-QVGFGKLNSDENP 59
Query: 223 SLMSKFNVQGFPTILVF 239
+ +++ V PT++ F
Sbjct: 60 DIAARYGVMSLPTVIFF 76
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAA 85
GSS V +T N++ + G ++EFYAPWC CQ L P WE A + + +A
Sbjct: 4 GSSGNVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAK 60
Query: 86 LDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+D E L+ + I PTI G+ YQG R K F
Sbjct: 61 VDVTEQPGLSGRFIINALPTIYHCKDGE-FRRYQGPRTKKDFINF 104
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKS 223
+ N+ EL+ + W++EF+APWC C+ L PEW+ A + +V + VD +
Sbjct: 12 ITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG 68
Query: 224 LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAP 272
L +F + PTI + Y+G RT +F ++ ++ P
Sbjct: 69 LSGRFIINALPTI--YHCKDGEFRRYQGPRTKKDFINFISDKEWKSIEP 115
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 166 NSSNFDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
N FD + K+K+ + I++F A WCG C+ +AP + + A G V L VD D K
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL-KVDVDELK 79
Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGAR 253
+ K+NV+ PT L GA+ D + GAR
Sbjct: 80 EVAEKYNVEAMPTFLFIKDGAEADKVV---GAR 109
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 42 SKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR 101
+K A VV+++F A WCG C+ + P++ + A G A +D +E + +A++Y +
Sbjct: 30 TKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFLKVDVDELKEVAEKYNVE 88
Query: 102 GFPTIKVFVPGKPPVDYQGAR 122
PT G GAR
Sbjct: 89 AMPTFLFIKDGAEADKVVGAR 109
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV 83
+L GSS +++ + +V ++ V+V FY+P C +C+A P +E+ A A
Sbjct: 2 SLNGSS--IIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVF 59
Query: 84 AALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
++ + A++YG++G PT K F G+P
Sbjct: 60 GRINIATNPWTAEKYGVQGTPTFKFFCHGRP 90
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
IE + + V SK +V F++P C +CK P +++ A G ++ +
Sbjct: 9 IEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNP 68
Query: 223 SLMSKFNVQGFPTILVF 239
K+ VQG PT F
Sbjct: 69 WTAEKYGVQGTPTFKFF 85
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLE-VDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130
+ Q +A +YGIRG PT+ +F G+ GA + EF
Sbjct: 61 DAQDVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEF 101
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + K+ ++G PT+L+F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVAPKYGIRGIPTLLLF 80
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111
+V+FYA WCG C+ + PI E+ + G + ++ ++ LA+++GI+ PTI FVP
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI-WFVP 113
Query: 112 --GKPPVD 117
G+P V+
Sbjct: 114 MKGEPQVN 121
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
IV+F+A WCG CK +AP ++ + GK+ + V+ D E L F +Q PTI
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 44 VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF 103
+++ N +V+V+F+A WCG C+ + P +E+ + + + +D +E + ++ I
Sbjct: 22 IISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFI-KVDVDEVSEVTEKENITSM 80
Query: 104 PTIKVFVPGKPPVDYQGARD 123
PT KV+ G GA D
Sbjct: 81 PTFKVYKNGSSVDTLLGAND 100
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
I + + FD ++ ++ +L IV+FFA WCG CK++AP +++ + K+ VD D
Sbjct: 12 IVTSQAEFDSIISQN-ELVIVDFFAEWCGPCKRIAPFYEECSKTY-TKMVFIKVDVDEVS 69
Query: 223 SLMSKFNVQGFPTILVF--GADKDSPIPYEGARTAGAIESFA 262
+ K N+ PT V+ G+ D+ + + IE +A
Sbjct: 70 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATV-------LKGVAT 82
S VV+LT F S V++ V V +Y PW H A +W+ + L VA
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVA- 73
Query: 83 VAALDANEHQSLAQEYGIRGFPTIKVF--VPGKPPVDYQGARDVKPIAEFALQ 133
A +D ++ + + + GFPT++ + + + P +Y G R + + F Q
Sbjct: 74 -ARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVK-----LGHVD 217
+EL FD +V+ + V ++ PW H W + + K +D
Sbjct: 18 VELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARID 77
Query: 218 CDSEKSLMSKFNVQGFPTILVFG-ADKDSPIPYEGARTAGAIESFALE 264
+ ++ + V GFPT+ + DK P Y G R ++SF +
Sbjct: 78 GEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 27 GSSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84
GS S +++L + +L + N +V+V+F+A WCG C+ + P++++ + K A
Sbjct: 1 GSMSKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFV 58
Query: 85 ALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121
+D ++ + A++Y I PT G+ D GA
Sbjct: 59 KVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGA 95
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237
L +V+FFA WCG CK +AP +K+ + K VD D + K+N+ PT +
Sbjct: 26 LVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPTFI 81
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 29 SSPVVQL--TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86
S P+V T +++ A G+VLV+F+A WCG CQ L I A K V T +
Sbjct: 2 SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDV-TFIKV 60
Query: 87 DANEHQSLAQEYGIRGFPTI 106
D +++ + A YG+ P +
Sbjct: 61 DVDKNGNAADAYGVSSIPAL 80
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237
L +V+FFA WCG C++L A K V VD D + + V P +
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAEANK-DVTFIKVDVDKNGNAADAYGVSSIPALF 81
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
L+++ F++L+ +V F C C+K+ P ++ N + +VD + EK+L
Sbjct: 9 LDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTL 68
Query: 225 MSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
+F+++G P IL F KD Y+G + AG +E +EQ +V
Sbjct: 69 FQRFSLKGVPQILYF---KDG--EYKG-KXAGDVEDDEVEQXIADV 108
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS 93
+L N F+ + + LV F C CQ +TP+ E+ + +D E ++
Sbjct: 8 KLDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT 67
Query: 94 LAQEYGIRGFPTIKVFVPGK 113
L Q + ++G P I F G+
Sbjct: 68 LFQRFSLKGVPQILYFKDGE 87
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 167 SSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
+++ ++L+ ++K L +V+FFA WCG C+ +AP+ + A + +V+ VD D +
Sbjct: 7 AADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQNEEAA 65
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGA 252
+K++V PT VF D + GA
Sbjct: 66 AKYSVTAMPT-FVFIKDGKEVDRFSGA 91
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 43 KVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGI 100
K++N N +++V+F+A WCG C+ + P E A + V A +D ++++ A +Y +
Sbjct: 12 KLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEV-EFAKVDVDQNEEAAAKYSV 70
Query: 101 RGFPTIKVFVPGKPPVDYQGARDVK 125
PT GK + GA + K
Sbjct: 71 TAMPTFVFIKDGKEVDRFSGANETK 95
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
+V+++F+A WCG C+ ++P + +T V +D +E + +A EY I PT
Sbjct: 22 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL 81
Query: 110 VPGKPPVDYQGAR 122
G ++ GA
Sbjct: 82 KNGVKVEEFAGAN 94
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231
+L S L +++FFA WCG CK ++P+ + + V + VD D + + ++N+
Sbjct: 14 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 232 GFPTIL 237
PT +
Sbjct: 74 SMPTFV 79
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 32 VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
V QL + + + S + + + +V+V+F+A WCG C+ + P+ EK A A LD +E
Sbjct: 9 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSD-AAFYKLDVDE 67
Query: 91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+AQ+ + PT+ + GK GA
Sbjct: 68 VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 99
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
++S +D + L +V+FFA WCG CK +AP +K A +D D +
Sbjct: 14 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 72
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
K V PT++ + K E R GA + + + +NV
Sbjct: 73 QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 111
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 32 VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
V QL + + + S + + + +V+V+F+A WCG C+ + P+ EK A A LD +E
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSD-AAFYKLDVDE 60
Query: 91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+AQ+ + PT+ + GK GA
Sbjct: 61 VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 92
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
++S +D + L +V+FFA WCG CK +AP +K A +D D +
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 65
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
K V PT++ + K E R GA + + + +NV
Sbjct: 66 QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 104
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 170 FDELVLKSKD---LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS 226
FD + KD L I++F A WCG C+ +AP + + A G + L VD D K +
Sbjct: 17 FDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL-KVDVDELKDVAE 75
Query: 227 KFNVQGFPTIL 237
+NV+ PT L
Sbjct: 76 AYNVEAMPTFL 86
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 47 ANG-----VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR 101
ANG +V+++F A WCG C+ + P++ + A G A +D +E + +A+ Y +
Sbjct: 22 ANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFLKVDVDELKDVAEAYNVE 80
Query: 102 GFPTIKVFVPGKPPVD 117
PT +F+ VD
Sbjct: 81 AMPTF-LFIKDGEKVD 95
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
+V+++F+A WCG C+ ++P + +T V +D +E + +A EY I PT
Sbjct: 27 LVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL 86
Query: 110 VPGKPPVDYQGAR 122
G ++ GA
Sbjct: 87 KNGVKVEEFAGAN 99
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231
+L S L +++FFA WCG CK ++P+ + + V + VD D + + ++N+
Sbjct: 19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 78
Query: 232 GFPTIL 237
PT +
Sbjct: 79 SMPTFV 84
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVF 109
V+++ + WCG C+A+ P +EK A V + LD N E+++LA+E GIR PT K+
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAKELGIRVVPTFKIL 86
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 164 ELNSSNFDELVLKSKDLWIV-EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE- 221
E+N F +V + D +V + F WCG CK +AP+++K A + L +DC+ E
Sbjct: 10 EVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCNQEN 68
Query: 222 KSLMSKFNVQGFPTILVF 239
K+L + ++ PT +
Sbjct: 69 KTLAKELGIRVVPTFKIL 86
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVF 109
V+++ + WCG C+A+ P +EK A V + LD N E+++LA+E GIR PT K+
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAKELGIRVVPTFKIL 98
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 164 ELNSSNFDELVLKSKDLWIV-EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE- 221
E+N F +V + D +V + F WCG CK +AP+++K A + L +DC+ E
Sbjct: 22 EVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL-KLDCNQEN 80
Query: 222 KSLMSKFNVQGFPTILVF 239
K+L + ++ PT +
Sbjct: 81 KTLAKELGIRVVPTFKIL 98
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105
+ N +V+V+F+A WCG C+ + P++++ + K A +D ++ + A++Y I PT
Sbjct: 31 HKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPT 88
Query: 106 IKVFVPGKPPVDYQGA 121
G+ D GA
Sbjct: 89 FIAIKNGEKVGDVVGA 104
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 160 NESIELNSS-NFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217
+E IEL + + L+ + K+ L +V+FFA WCG CK +AP +K+ + K VD
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVD 70
Query: 218 CDSEKSLMSKFNVQGFPTIL 237
D + K+N+ PT +
Sbjct: 71 VDKLEETARKYNISAMPTFI 90
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
T + F S + + +V+V+FYA WCG C+ + P+ EK + A LD +E +A
Sbjct: 7 TASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVA 64
Query: 96 QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
Q+ + PT+ +F GK GA
Sbjct: 65 QKNEVSAMPTLLLFKNGKEVAKVVGAN 91
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
+S FD + + K L +V+F+A WCG CK +AP +K + + +D D +
Sbjct: 7 TASEFDSAIAQDK-LVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 64
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
K V PT+L+F K E A+ GA
Sbjct: 65 QKNEVSAMPTLLLFKNGK------EVAKVVGA 90
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
T + F S + + +V+V+FYA WCG C+ + P+ EK + A LD +E +A
Sbjct: 13 TASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVA 70
Query: 96 QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
Q+ + PT+ +F GK GA
Sbjct: 71 QKNEVSAMPTLLLFKNGKEVAKVVGAN 97
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
+S FD + + K L +V+F+A WCG CK +AP +K + + +D D +
Sbjct: 13 TASEFDSAIAQDK-LVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 70
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
K V PT+L+F K E A+ GA
Sbjct: 71 QKNEVSAMPTLLLFKNGK------EVAKVVGA 96
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D N
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVN 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD + + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVNDCQDVASECEVKCMPTFQFF 80
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 42 SKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG 99
+K LN N +V+++FYA WCG C+ + P E+ + + V + +D +E + +AQ+
Sbjct: 12 TKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL-KVDVDECEDIAQDNQ 70
Query: 100 IRGFPTIKVFVPGKPPVDYQGAR 122
I PT G+ GA
Sbjct: 71 IACMPTFLFMKNGQKLDSLSGAN 93
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237
L +++F+A WCG CK +AP+ ++ + ++ V L VD D + + + PT L
Sbjct: 22 LVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL-KVDVDECEDIAQDNQIACMPTFL 78
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222
++ N SN V + ++ FFA WC C + E K ++ L VD D +
Sbjct: 27 LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE 86
Query: 223 SLMSKFNVQGFPTILVF 239
SL KF+V+ PTI++
Sbjct: 87 SLARKFSVKSLPTIILL 103
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
P +Q +N + V N V+++ F+A WC C + +K + +D ++
Sbjct: 25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDK 84
Query: 91 HQSLAQEYGIRGFPTI 106
++SLA+++ ++ PTI
Sbjct: 85 NESLARKFSVKSLPTI 100
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEK 96
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASESEVKSMPTFQFF 80
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 181 WIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKL-----GHVDCDSEKSLMSKFNVQG 232
WIV F+ CG C++ A + K A LK GK L V+C SE L K+++
Sbjct: 45 WIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINF 104
Query: 233 FPTILVFGADKDSPIPYEGARTAGAIESFALE--QLETNVAPPEVTELTSQ-----DVME 285
P + F +DS E T+ ++E A E LE + EV L ++ D ++
Sbjct: 105 VPRLFFFYP-RDSCRSNEECGTS-SLEHVAFENSHLEVDELESEVRRLVNKHMVVDDSLK 162
Query: 286 EKCGSAAICFYLEMLLSVAEKFKR 309
E+C I + ++ S E KR
Sbjct: 163 ERC----IDMHFKLYTSKEELVKR 182
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 25 LYGSSSPVVQLTPNNFKSKVLNANGVV--LVEFYAPWCGHCQALTPIWEKAATVLK---- 78
L+ S VV L+ ++F S+V + +V FY CG C+ + K A LK
Sbjct: 18 LFHLDSSVVDLSGDDF-SRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHG 76
Query: 79 ----GVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111
+AT AA++ L ++Y I P + F P
Sbjct: 77 KDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYP 113
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEK 96
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKSMPTFQFF 80
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEK 96
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASEXEVKCMPTFQFF 80
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
+K L +++F A WCG C+ +AP + A V L VD D K + +F+V+ PT
Sbjct: 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL-KVDVDELKPIAEQFSVEAMPTF 91
Query: 237 LVF--GADKDSPIPYEGARTAGAIE 259
L G KD R GAI+
Sbjct: 92 LFMKEGDVKD--------RVVGAIK 108
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105
A +V+++F A WCG C+ + P++ A A +D +E + +A+++ + PT
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPT 90
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEK 96
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVASEAEVKATPTFQFF 80
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCMPTFQFF 80
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235
+SK L +V+F A WCG C+ +AP + A L + L VD D KS+ S + +Q PT
Sbjct: 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFL-KVDTDELKSVASDWAIQAMPT 94
Query: 236 IL----------VFGADKD 244
+ V GA KD
Sbjct: 95 FMFLKEGKILDKVVGAKKD 113
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
T N K + +V+V+F A WCG C+ + P + A L V + +D +E +S+A
Sbjct: 26 TWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLK-VDTDELKSVA 84
Query: 96 QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
++ I+ PT GK GA+
Sbjct: 85 SDWAIQAMPTFMFLKEGKILDKVVGAK 111
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 32 VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
V QL + + + S + + + +V+V+F+A WCG + + P+ EK A A LD +E
Sbjct: 10 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD-AAFYKLDVDE 68
Query: 91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+AQ+ + PT+ + GK GA
Sbjct: 69 VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 100
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
++S +D + L +V+FFA WCG K +AP +K A +D D +
Sbjct: 15 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 73
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
K V PT++ + K E R GA + + + +NV
Sbjct: 74 QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 112
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 32 VVQL-TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90
V QL + + + S + + + +V+V+F+A WCG + + P+ EK A A LD +E
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD-AAFYKLDVDE 60
Query: 91 HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR 122
+AQ+ + PT+ + GK GA
Sbjct: 61 VSDVAQKAEVSSMPTLIFYKGGKEVTRVVGAN 92
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
++S +D + L +V+FFA WCG K +AP +K A +D D +
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY-SDAAFYKLDVDEVSDVA 65
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270
K V PT++ + K E R GA + + + +NV
Sbjct: 66 QKAEVSSMPTLIFYKGGK------EVTRVVGANPAAIKQAIASNV 104
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASECEVKCTPTFQFFKKGQKVGEFSGANKEK 96
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG CK + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKCTPTFQFF 80
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVF 109
V+++ + WCG +A+ P +EK A V + LD N E+++LA+E GIR PT K+
Sbjct: 27 VVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDCNQENKTLAKELGIRVVPTFKIL 85
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 164 ELNSSNFDELVLKSKDLWIV-EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE- 221
E+N F +V + D +V + F WCG K +AP+++K A + L +DC+ E
Sbjct: 9 EVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL-KLDCNQEN 67
Query: 222 KSLMSKFNVQGFPTILVF 239
K+L + ++ PT +
Sbjct: 68 KTLAKELGIRVVPTFKIL 85
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG + + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DSQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEK 96
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG K + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDSQDVASESEVKSMPTFQFF 80
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA 95
T + F S + + +V+V+FYA WCG + + P+ EK + A LD +E +A
Sbjct: 13 TASEFDSAIAQ-DKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQ-ADFYKLDVDELGDVA 70
Query: 96 QEYGIRGFPTIKVFVPGKPPVDYQGAR 122
Q+ + PT+ +F GK GA
Sbjct: 71 QKNEVSAMPTLLLFKNGKEVAKVVGAN 97
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
+S FD + + K L +V+F+A WCG K +AP +K + + +D D +
Sbjct: 13 TASEFDSAIAQDK-LVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELGDVA 70
Query: 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257
K V PT+L+F K E A+ GA
Sbjct: 71 QKNEVSAMPTLLLFKNGK------EVAKVVGA 96
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
S+ L +V+F A WC CK +AP + + A V VD D K++ ++NV+ PT
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPTF 83
Query: 237 LVF----------GADKDSPIPYEGARTAGA 257
+ GADKD +P A+ A A
Sbjct: 84 IFLKDGKLVDKTVGADKDG-LPTLVAKHATA 113
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106
+ +++V+F A WC C+ + PI+ + A V T +D +E +++A+E+ + PT
Sbjct: 25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-TFLKVDVDELKAVAEEWNVEAMPTF 83
Query: 107 KVFVPGK 113
GK
Sbjct: 84 IFLKDGK 90
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG + + P + + V + +D +
Sbjct: 13 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVD 71
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 72 DCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEK 107
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG K + P + + + L VD D + + S+ V+ PT F
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKSMPTFQFF 91
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 181 WIVEFFAPWCGHCKKLAPEWKKAANNLK---GKVKL-----GHVDCDSEKSLMSKFNVQG 232
WIV F+ CG ++ A + K A LK GK L V+C SE L K+++
Sbjct: 45 WIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINF 104
Query: 233 FPTILVFGADKDSPIPYEGARTAGAIESFALE--QLETNVAPPEVTELTSQ-----DVME 285
P + F +DS E T+ ++E A E LE + EV L ++ D ++
Sbjct: 105 VPRLFFFYP-RDSCRSNEECGTS-SLEHVAFENSHLEVDELESEVRRLVNKHMVVDDSLK 162
Query: 286 EKCGSAAICFYLEMLLSVAEKFKR 309
E+C I + ++ S E KR
Sbjct: 163 ERC----IDMHFKLYTSKEELVKR 182
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236
+K L +++F A WCG + +AP + A V L VD D K + +F+V+ PT
Sbjct: 36 AKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFL-KVDVDELKPIAEQFSVEAMPTF 94
Query: 237 LVF--GADKDSPIPYEGARTAGAIE 259
L G KD R GAI+
Sbjct: 95 LFMKEGDVKD--------RVVGAIK 111
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105
A +V+++F A WCG + + P++ A A +D +E + +A+++ + PT
Sbjct: 35 TAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPT 93
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG + + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DAQDVASEAEVKATPTFQFFKKGQKVGEFSGANKEK 96
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG K + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPAKMIKPFFHSLSEKYSNVIFL-EVDVDDAQDVASEAEVKATPTFQFF 80
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG + + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASECEVKRMPTFQFFKKGQKVGEFSGANKEK 96
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
L +V+F A WCG K + P + + + L VD D + + S+ V+ PT F
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL-EVDVDDCQDVASECEVKRMPTFQFF 80
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD 87
S + + +LT ++ N ++++FYA WCG C+ + P K V V D
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKC-D 68
Query: 88 ANEHQSLAQEYGIRGFPTIKVFVPGK 113
+E +A+E + PT FV GK
Sbjct: 69 VDESPDIAKECEVTAMPT---FVLGK 91
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM 225
N + F L+ K D +++F+A WCG CK + P K V+ D D +
Sbjct: 19 NLTEFRNLI-KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESPDIA 76
Query: 226 SKFNVQGFPTILVFGAD 242
+ V PT V G D
Sbjct: 77 KECEVTAMPT-FVLGKD 92
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 175 LKSKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGF 233
+ S+D+ V +F A WCG CK + +K A VK VD D+ ++SK V
Sbjct: 33 IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQL 91
Query: 234 PTILV 238
PT ++
Sbjct: 92 PTFII 96
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 44 VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGF 103
+++ + + + F A WCG C+ + EK A V A +DA+ + + + +
Sbjct: 33 IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTV-KFAKVDADNNSEIVSKCRVLQL 91
Query: 104 PTIKVFVPGK 113
PT + GK
Sbjct: 92 PTFIIARSGK 101
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 165 LNSSNFDELVLKSKDL-WIVEFFAPWCGHCKKLAPEWKKAA--NNLKGKVKLGHVDCDSE 221
N DE + + K + WIVEFFA W C+ AP + + N G + G VD
Sbjct: 12 FNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG-LNFGKVDVGRY 70
Query: 222 KSLMSKFNV------QGFPTILVFGADKDS 245
+ +++ V + PT+++F K++
Sbjct: 71 TDVSTRYKVSTSPLTKQLPTLILFQGGKEA 100
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVAT---VAALDANEHQSLAQEYGI------RG 102
+VEF+A W CQ+ PI+ A LK T +D + ++ Y + +
Sbjct: 30 IVEFFANWSNDCQSFAPIY--ADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87
Query: 103 FPTIKVFVPGK-----PPVDYQG 120
PT+ +F GK P +D +G
Sbjct: 88 LPTLILFQGGKEAMRRPQIDKKG 110
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 166 NSSNFDELV-LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
++ F+EL+ LK+K L +V F+APW C ++ + A L +V ++ + +
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEV 83
Query: 225 MSKFNVQGFPTILVF 239
K+ + PT L F
Sbjct: 84 SEKYEISSVPTFLFF 98
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP 104
L A +++V F+APW C + + + A L V+ V L+A ++++Y I P
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFV-KLEAEGVPEVSEKYEISSVP 93
Query: 105 TIKVF 109
T F
Sbjct: 94 TFLFF 98
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 166 NSSNFDELV-LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL 224
++ F+EL+ LK+K L +V F+APW C ++ + A L +V ++ + +
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEV 77
Query: 225 MSKFNVQGFPTILVF 239
K+ + PT L F
Sbjct: 78 SEKYEISSVPTFLFF 92
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP 104
L A +++V F+APW C + + + A L V+ V L+A ++++Y I P
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFV-KLEAEGVPEVSEKYEISSVP 87
Query: 105 TIKVF 109
T F
Sbjct: 88 TFLFF 92
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 55 FYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114
F +P C HC A + E+ A + V ++ E+ A EYGI PTI +
Sbjct: 9 FTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI----NG 64
Query: 115 PVDYQGARDVKPIAEFALQQIKALL 139
V++ GA P E ++ IK L
Sbjct: 65 DVEFIGA----PTKEALVEAIKKRL 85
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A W G + + P + + V + +D +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFL-EVDVD 60
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
+ Q +A E ++ PT + F G+ ++ GA K
Sbjct: 61 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEK 96
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKV 211
+V+F A WCG CK +AP ++ +N+ GKV
Sbjct: 28 VVDFTATWCGPCKMIAPLFETLSNDYAGKV 57
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110
++V+F A WCG C+ + P++E + G +D + ++A+ GI PT V+
Sbjct: 27 IVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 111 PGKPPVDYQGARDVK 125
G D GA K
Sbjct: 87 DGVKADDLVGASQDK 101
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 32 VVQLTPNNFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN 89
V Q+ + L+A G +V+V+F A WCG C+ + P + + V + +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 90 EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125
Q +A E ++ PT + F G+ ++ GA K
Sbjct: 62 -XQDVASEXEVKCMPTFQFFKKGQKVGEFSGANKEK 96
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 180 LWIVEFFAPWCGHCKKLAP 198
L +V+F A WCG CK + P
Sbjct: 22 LVVVDFSATWCGPCKMIKP 40
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKV 211
+V F A WCG CK +AP ++ +N+ GKV
Sbjct: 28 VVAFTATWCGPCKMIAPLFETLSNDYAGKV 57
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110
++V F A WCG C+ + P++E + G +D + ++A+ GI PT V+
Sbjct: 27 IVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86
Query: 111 PGKPPVDYQGARDVK 125
G D GA K
Sbjct: 87 DGVKADDLVGASQDK 101
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVL-----KGVATVAALDANEHQSLAQEYGIRG 102
+ ++ V+ + WCG C+ L+ + K + V V ++ E L ++YG+
Sbjct: 27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHA 86
Query: 103 FPTIKVFVPGKPPVDYQ--GARD 123
+PT+ +F+ V Y+ GA D
Sbjct: 87 YPTL-LFINSSGEVVYRLVGAED 108
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 180 LWIVEFFAPWCGHCKKL----------APEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN 229
L V+ F WCG CK+L A + + NLK ++ G L K+
Sbjct: 29 LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE-----GVELRKKYG 83
Query: 230 VQGFPTILVFGADKDSPIPYEGARTA 255
V +PT+L + + GA A
Sbjct: 84 VHAYPTLLFINSSGEVVYRLVGAEDA 109
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 27 GSSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEK 72
G +P +T + K L++ VV+++F A WCG C+ P EK
Sbjct: 10 GEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ 231
EL L +V+F CG C ++AP + +N V L VD + + N+
Sbjct: 15 ELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL-EVDVHQCQGTAATNNIS 73
Query: 232 GFPTILVFGADKDSPIPYEGARTAG 256
PT F +K Y+GA G
Sbjct: 74 ATPTFQFF-RNKVRIDQYQGADAVG 97
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 41/231 (17%)
Query: 34 QLTPNNFKSKVLNANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKGVA-TVAALDANEH 91
++ F SK++N V L+ F C +C L + ++ + + ++ + D E
Sbjct: 10 RIIKEEFFSKMVNP--VKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEG 67
Query: 92 QSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATXX 150
+ LA++Y I P + GK V Y G + EFA A L++ +
Sbjct: 68 KELAEKYRIDRAPATTITQDGKDFGVRYFG---IPAGHEFA-----AFLEDIVD------ 113
Query: 151 XXXXXXXXXNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHC-------KKLAPEWKKA 203
+L + +E+ KD+ I+ F P C +C K A E KA
Sbjct: 114 -------VSKGDTDLMQDSKEEVSKIDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKA 166
Query: 204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL--VFGADKDSPIPYEGA 252
KGK+ V+ ++NV P I+ V G DK + +EGA
Sbjct: 167 G---KGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDK---VQFEGA 211
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 31.2 bits (69), Expect = 0.99, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 163 IEL-NSSNFDELVLKSKDLWIV-EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220
IEL N+ + +++ +++ IV +F A WC C K+ +K N V L +D D
Sbjct: 23 IELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDI 80
Query: 221 EKSLMSKFNVQGFPT 235
L + N++ PT
Sbjct: 81 HPKLNDQHNIKALPT 95
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 20/85 (23%)
Query: 1 MRRSQLLVILTIFSFFAR---------------FNLSDALYGSSSPVVQL----TPNNF- 40
M+R LL+ L IF A NL AL G P +L P F
Sbjct: 1 MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKPVPKFRLESLDNPGQFY 60
Query: 41 KSKVLNANGVVLVEFYAPWCGHCQA 65
++ VL VL+ +A WC C+A
Sbjct: 61 QADVLTQGKPVLLNVWATWCPTCRA 85
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239
+ F A WCG CK++AP + + + N + L +D D + + ++ PT
Sbjct: 50 LANFSARWCGPCKQIAPYYIELSENYPSLMFLV-IDVDELSDFSASWEIKATPTFFFL 106
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109
+VL F A WCG C+ + P + + + + + +D +E + + I+ PT
Sbjct: 48 IVLANFSARWCGPCKQIAPYYIELSENYPSLMFL-VIDVDELSDFSASWEIKATPTFFFL 106
Query: 110 VPGK 113
G+
Sbjct: 107 RDGQ 110
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 55 FYAPWCGHC-QALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV----- 108
F CG+C A W+ A + T +DA+E+Q LA+++ + G P I +
Sbjct: 143 FVTTSCGYCPSAAVXAWDFA--LANDYITSKVIDASENQDLAEQFQVVGVPKIVINKGVA 200
Query: 109 -FVPGKP 114
FV +P
Sbjct: 201 EFVGAQP 207
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 55 FYAPWCGHC-QALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV----- 108
F CG+C A W+ A + T +DA+E+Q LA+++ + G P I +
Sbjct: 143 FVTTSCGYCPSAAVMAWDFA--LANDYITSKVIDASENQDLAEQFQVVGVPKIVINKGVA 200
Query: 109 -FVPGKPPVDYQG 120
FV +P + G
Sbjct: 201 EFVGAQPENAFLG 213
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 231 QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEK 287
+G P ++ G+ + I EG+R A ++ +A ++ + PE+ + S V++E+
Sbjct: 170 EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER 226
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 50 VVLVEFYAPWCGHCQALTPIWEKAATV-----LKGVATVAALDANEHQSLAQEYGIRGFP 104
+V+V F++ C +CQ + V + V ++D E Q LA+ Y + G P
Sbjct: 21 MVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTP 80
Query: 105 TIKVFVP 111
T VP
Sbjct: 81 TFVFLVP 87
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 182 IVEFFAPWCGHCKKLA------PEWKKA-ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP 234
+++ +A WC CK+ P+ +KA A+ + + + D + +L+ NV G P
Sbjct: 35 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDA-QDVALLKHLNVLGLP 93
Query: 235 TILVF-GADKDSPIPYEGARTAGAIES 260
TIL F G ++ P AR G +++
Sbjct: 94 TILFFDGQGQEHP----QARVTGFMDA 116
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG------IRGFP 104
V+++ YA WC C+ V K +A L AN + AQ+ + G P
Sbjct: 34 VMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLP 93
Query: 105 TIKVF 109
TI F
Sbjct: 94 TILFF 98
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 182 IVEFFAPWCGHCKKLA------PEWKKA-ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP 234
+++ +A WC CK+ P+ +KA A+ + + + D + +L+ NV G P
Sbjct: 32 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDA-QDVALLKHLNVLGLP 90
Query: 235 TILVF-GADKDSPIPYEGARTAGAIES 260
TIL F G ++ P AR G +++
Sbjct: 91 TILFFDGQGQEHP----QARVTGFMDA 113
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYG------IRGFP 104
V+++ YA WC C+ V K +A L AN + AQ+ + G P
Sbjct: 31 VMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLP 90
Query: 105 TIKVF 109
TI F
Sbjct: 91 TILFF 95
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 163 IELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPE 199
+ ++ F LK K +IV FFA WC C+ P+
Sbjct: 20 VTVDGKPFSSASLKGK-AYIVNFFATWCPPCRSEIPD 55
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 165 LNSSNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLG---HVDCD 219
L+ + FD L+ K LW F+ PWC C AP + A +G D
Sbjct: 12 LSGAPFDGASLQGKPAVLW---FWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVG 68
Query: 220 SEKSLMSKFNV 230
+ +S +SK+N+
Sbjct: 69 AMQSFVSKYNL 79
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK----SLMSKFN 229
LK K +++ F+ WC HCKK P + K + V++ V+ K + M +
Sbjct: 21 LKGKGVFL-NFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYG 79
Query: 230 VQGFPTIL-----VFGADKDSPIP 248
V FP +L V A SP+P
Sbjct: 80 VN-FPVVLDTDRQVLDAYDVSPLP 102
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK----SLMSKFN 229
LK K +++ F+ WC HCKK P + K + V++ V+ K + M +
Sbjct: 24 LKGKGVFL-NFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYG 82
Query: 230 VQGFPTIL-----VFGADKDSPIP 248
V FP +L V A SP+P
Sbjct: 83 VN-FPVVLDTDRQVLDAYDVSPLP 105
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 20 NLSDALYGSSSPVVQL----TPNNF-KSKVLNANGVVLVEFYAPWCGHCQA 65
NL AL G P +L P F ++ VL VL+ +A WC C+A
Sbjct: 18 NLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRA 68
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 20 NLSDALYGSSSPVVQL----TPNNF-KSKVLNANGVVLVEFYAPWCGHCQA 65
NL AL G P +L P F ++ VL VL+ +A WC C+A
Sbjct: 18 NLESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRA 68
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP 234
+ KD IV FF E+ KAA+NL+ + H + + SL+++++ G
Sbjct: 21 ISDKDASIVGFFDDSFSEAH---SEFLKAASNLRDNYRFAHTNVE---SLVNEYDDNGEG 74
Query: 235 TILVFGAD-----KDSPIPY-EGARTAGAIESFALEQL 266
IL + +D + Y E T+G I+ F E +
Sbjct: 75 IILFRPSHLTNKFEDKTVAYTEQKXTSGKIKKFIQENI 112
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL 213
++EFF +C HC L P K A + K + L
Sbjct: 45 VLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYL 76
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL 213
++EFF +C HC L P K A + K + L
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYL 59
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL 213
++EFF +C HC L P K A + K + L
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYL 59
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK 222
++N LK K ++I + +A WCG C+ P K+ GK + + CD K
Sbjct: 17 DINGKTVSLADLKGKYIYI-DVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNK 75
Query: 223 ----SLMSKFNVQGFPTILVFGADK 243
++++K ++G L G D+
Sbjct: 76 KAWENMVTKDQLKGIQ--LHMGTDR 98
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein From
Neisseria Meningitidis Serogroup B
Length = 151
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 182 IVEFFAPWCGHCKKLAP---EWKKAANNLKGKVKLGHVDCDSEKSL 224
IV +A WCG C+K P +W KA KG V + D+ ++
Sbjct: 28 IVNLWATWCGPCRKEXPAXSKWYKAQK--KGSVDXVGIALDTSDNI 71
>pdb|1G7E|A Chain A, Nmr Structure Of N-Domain Of Erp29 Protein
Length = 122
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 221 EKSLMSKFNVQGFPTILVF-GADKDSPIPYEGARTAGAIE 259
E S K + + +P +F D ++P+PY GA GAI+
Sbjct: 71 ELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQ 110
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 28 SSSPVVQ---LTPNNFKSKVLNANG---------VVLVEFYAPWCGHCQALTPIWEK-AA 74
S +P+V+ L PN FK L+ +VLV F+A WC +C+ P ++
Sbjct: 10 SDAPLVRTGALAPN-FKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVK 68
Query: 75 TVLKGVATVAALDANEH 91
+ KG V A++ +
Sbjct: 69 SFPKGDLVVLAVNVEKR 85
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 227 KFNVQGFPTILVF-GADKDSPIPYEGARTAGAIE 259
K + + +P +F D ++P+PY GA GAI+
Sbjct: 78 KLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQ 111
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 25/80 (31%)
Query: 50 VVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAA-LDANEHQS---LAQE----- 97
VV ++F+A WCG C+ P W +A KG VA LDA + LAQ
Sbjct: 30 VVYLDFWASWCGPCRQSFP-WXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFT 88
Query: 98 ------------YGIRGFPT 105
YG++G PT
Sbjct: 89 VAFDPKGQTPRLYGVKGXPT 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,020,331
Number of Sequences: 62578
Number of extensions: 496518
Number of successful extensions: 1566
Number of sequences better than 100.0: 173
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 344
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)