Query 015217
Match_columns 411
No_of_seqs 232 out of 3580
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 6.7E-35 1.5E-39 270.6 26.6 313 27-376 22-353 (493)
2 PTZ00102 disulphide isomerase; 100.0 8.8E-32 1.9E-36 263.6 34.5 298 28-376 30-345 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.8E-30 3.9E-35 253.8 31.2 309 31-376 2-334 (462)
4 KOG4277 Uncharacterized conser 100.0 3.9E-29 8.5E-34 212.1 20.4 294 29-368 27-350 (468)
5 KOG0191 Thioredoxin/protein di 100.0 5E-29 1.1E-33 235.4 23.0 241 25-281 24-267 (383)
6 PF01216 Calsequestrin: Calseq 100.0 4.5E-26 9.7E-31 198.2 28.9 313 25-375 29-374 (383)
7 TIGR02187 GlrX_arch Glutaredox 99.9 2.7E-25 5.8E-30 192.9 19.1 191 47-264 18-214 (215)
8 KOG0912 Thiol-disulfide isomer 99.9 1.8E-23 3.8E-28 178.2 22.8 298 36-373 2-323 (375)
9 PTZ00102 disulphide isomerase; 99.9 7.2E-22 1.6E-26 193.6 24.1 225 32-268 234-467 (477)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.1E-22 6.8E-27 153.5 11.4 107 25-131 4-113 (113)
11 KOG0190 Protein disulfide isom 99.9 5.7E-21 1.2E-25 178.1 19.8 210 158-378 23-244 (493)
12 TIGR01130 ER_PDI_fam protein d 99.9 6.5E-20 1.4E-24 179.3 24.3 224 32-267 219-455 (462)
13 PTZ00443 Thioredoxin domain-co 99.9 7E-21 1.5E-25 163.3 14.0 136 1-136 1-140 (224)
14 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 6.5E-21 1.4E-25 145.3 11.1 99 31-130 2-100 (101)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.3E-20 2.9E-25 144.5 10.8 101 31-131 2-104 (104)
16 KOG0910 Thioredoxin-like prote 99.8 9.9E-21 2.1E-25 147.2 8.6 105 31-135 44-148 (150)
17 PF00085 Thioredoxin: Thioredo 99.8 4.3E-20 9.3E-25 141.6 11.7 103 32-134 1-103 (103)
18 cd03065 PDI_b_Calsequestrin_N 99.8 7.9E-20 1.7E-24 141.0 10.1 110 25-135 4-119 (120)
19 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.1E-19 2.3E-24 140.4 10.9 100 31-131 2-108 (108)
20 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.4E-19 5.2E-24 137.5 12.2 103 158-261 7-112 (113)
21 cd03002 PDI_a_MPD1_like PDI fa 99.8 4.3E-19 9.3E-24 137.4 11.3 100 32-131 2-108 (109)
22 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 7.1E-19 1.5E-23 134.9 11.5 102 161-262 2-104 (104)
23 PRK09381 trxA thioredoxin; Pro 99.8 6.4E-19 1.4E-23 136.3 11.1 107 29-135 2-108 (109)
24 cd03001 PDI_a_P5 PDIa family, 99.8 1.6E-18 3.4E-23 132.8 11.2 100 32-131 2-102 (103)
25 COG3118 Thioredoxin domain-con 99.8 1.1E-18 2.3E-23 150.7 10.7 110 28-137 21-132 (304)
26 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.4E-18 7.3E-23 130.3 12.4 99 161-261 2-100 (101)
27 cd02994 PDI_a_TMX PDIa family, 99.8 1.5E-18 3.3E-23 132.2 10.4 98 31-132 2-100 (101)
28 cd02963 TRX_DnaJ TRX domain, D 99.8 9.4E-19 2E-23 135.3 8.9 101 33-133 7-110 (111)
29 PF00085 Thioredoxin: Thioredo 99.8 4.3E-18 9.2E-23 130.4 12.4 103 162-265 1-103 (103)
30 cd02962 TMX2 TMX2 family; comp 99.8 1.9E-18 4.1E-23 139.4 10.6 98 23-120 21-126 (152)
31 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.8E-18 4E-23 132.2 9.6 98 32-131 2-102 (102)
32 cd02956 ybbN ybbN protein fami 99.8 2.7E-18 6E-23 129.6 10.4 93 39-131 2-95 (96)
33 cd03007 PDI_a_ERp29_N PDIa fam 99.8 3.9E-18 8.4E-23 129.7 9.7 99 31-134 2-115 (116)
34 cd02954 DIM1 Dim1 family; Dim1 99.8 3.5E-18 7.7E-23 129.5 9.3 91 38-128 3-94 (114)
35 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.1E-17 2.3E-22 129.1 11.5 101 161-262 2-108 (108)
36 cd02993 PDI_a_APS_reductase PD 99.7 8.6E-18 1.9E-22 129.6 10.3 101 31-131 2-109 (109)
37 TIGR01126 pdi_dom protein disu 99.7 7.4E-18 1.6E-22 128.8 9.8 99 35-134 1-101 (102)
38 cd03002 PDI_a_MPD1_like PDI fa 99.7 1.9E-17 4.2E-22 128.1 12.1 101 162-262 2-108 (109)
39 cd02999 PDI_a_ERp44_like PDIa 99.7 6E-18 1.3E-22 127.9 8.7 84 46-131 16-100 (100)
40 PHA02278 thioredoxin-like prot 99.7 6.4E-18 1.4E-22 127.5 8.7 92 38-130 5-100 (103)
41 cd02997 PDI_a_PDIR PDIa family 99.7 9.8E-18 2.1E-22 128.6 10.0 99 32-131 2-104 (104)
42 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.4E-17 3E-22 127.8 10.5 100 31-131 1-104 (104)
43 PF13848 Thioredoxin_6: Thiore 99.7 2.5E-16 5.4E-21 134.1 19.1 164 194-367 6-184 (184)
44 PRK10996 thioredoxin 2; Provis 99.7 1.4E-17 3.1E-22 133.8 10.7 105 29-134 34-138 (139)
45 KOG0910 Thioredoxin-like prote 99.7 1.2E-17 2.7E-22 130.0 9.4 106 160-266 43-148 (150)
46 cd03001 PDI_a_P5 PDIa family, 99.7 4.6E-17 9.9E-22 124.6 12.0 101 162-262 2-102 (103)
47 cd02998 PDI_a_ERp38 PDIa famil 99.7 3E-17 6.4E-22 126.2 10.6 100 32-131 2-105 (105)
48 cd03065 PDI_b_Calsequestrin_N 99.7 4.7E-17 1E-21 125.6 11.2 105 159-265 8-118 (120)
49 KOG1731 FAD-dependent sulfhydr 99.7 8.8E-17 1.9E-21 149.5 14.5 227 22-268 31-271 (606)
50 KOG0191 Thioredoxin/protein di 99.7 5.7E-16 1.2E-20 146.6 19.7 209 160-371 29-254 (383)
51 cd02985 TRX_CDSP32 TRX family, 99.7 4.6E-17 1E-21 124.1 9.8 94 36-131 2-99 (103)
52 TIGR01068 thioredoxin thioredo 99.7 7E-17 1.5E-21 123.1 10.1 99 36-134 2-100 (101)
53 KOG0912 Thiol-disulfide isomer 99.7 2.7E-16 5.8E-21 134.7 14.4 201 166-380 2-219 (375)
54 cd02983 P5_C P5 family, C-term 99.7 2E-16 4.4E-21 124.7 12.1 112 273-384 2-130 (130)
55 PTZ00062 glutaredoxin; Provisi 99.7 3.3E-16 7.1E-21 132.2 14.0 161 36-238 5-174 (204)
56 cd02965 HyaE HyaE family; HyaE 99.7 7.8E-17 1.7E-21 121.2 9.0 98 30-128 10-109 (111)
57 cd02961 PDI_a_family Protein D 99.7 8.6E-17 1.9E-21 122.5 9.4 97 34-131 2-101 (101)
58 KOG4277 Uncharacterized conser 99.7 1.8E-16 4E-21 135.4 12.1 178 176-369 41-231 (468)
59 cd02948 TRX_NDPK TRX domain, T 99.7 1.3E-16 2.8E-21 121.4 10.0 95 35-132 5-100 (102)
60 cd02994 PDI_a_TMX PDIa family, 99.7 2.1E-16 4.5E-21 120.4 11.0 98 161-263 2-100 (101)
61 cd02993 PDI_a_APS_reductase PD 99.7 2.3E-16 5.1E-21 121.6 11.1 102 161-262 2-109 (109)
62 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4E-16 8.7E-21 119.6 11.2 101 161-262 1-104 (104)
63 PRK09381 trxA thioredoxin; Pro 99.7 6.2E-16 1.3E-20 119.5 12.3 106 160-266 3-108 (109)
64 cd03000 PDI_a_TMX3 PDIa family 99.7 3.6E-16 7.7E-21 119.7 10.5 93 38-133 7-102 (104)
65 cd02998 PDI_a_ERp38 PDIa famil 99.7 6.2E-16 1.3E-20 118.8 11.5 101 162-262 2-105 (105)
66 PLN00410 U5 snRNP protein, DIM 99.7 5.4E-16 1.2E-20 122.3 10.7 104 36-139 10-124 (142)
67 cd03005 PDI_a_ERp46 PDIa famil 99.7 4.8E-16 1E-20 118.7 10.3 98 162-262 2-102 (102)
68 TIGR02187 GlrX_arch Glutaredox 99.7 3.2E-15 7E-20 129.8 16.4 179 178-367 19-214 (215)
69 cd03007 PDI_a_ERp29_N PDIa fam 99.7 6.6E-16 1.4E-20 117.5 10.4 100 161-265 2-115 (116)
70 cd02953 DsbDgamma DsbD gamma f 99.7 4.9E-16 1.1E-20 119.0 9.7 93 38-131 2-103 (104)
71 PTZ00443 Thioredoxin domain-co 99.7 1.1E-15 2.4E-20 131.3 12.6 110 159-270 29-143 (224)
72 cd02963 TRX_DnaJ TRX domain, D 99.7 4.9E-16 1.1E-20 120.1 9.3 101 163-264 7-110 (111)
73 cd02956 ybbN ybbN protein fami 99.7 1.4E-15 2.9E-20 114.8 11.1 93 169-262 2-95 (96)
74 cd02957 Phd_like Phosducin (Ph 99.7 3.1E-16 6.7E-21 121.7 7.7 92 30-123 4-97 (113)
75 TIGR01126 pdi_dom protein disu 99.7 1.3E-15 2.8E-20 116.4 10.9 99 165-265 1-101 (102)
76 COG3118 Thioredoxin domain-con 99.6 1.2E-15 2.6E-20 132.0 11.7 109 158-267 21-131 (304)
77 cd02992 PDI_a_QSOX PDIa family 99.6 1.8E-15 4E-20 117.2 11.1 84 31-114 2-90 (114)
78 KOG0907 Thioredoxin [Posttrans 99.6 8.3E-16 1.8E-20 115.8 8.3 79 45-124 18-96 (106)
79 cd02950 TxlA TRX-like protein 99.6 1.9E-15 4.2E-20 121.7 10.8 98 38-136 11-111 (142)
80 cd02949 TRX_NTR TRX domain, no 99.6 1.8E-15 3.8E-20 114.2 10.0 91 41-131 6-96 (97)
81 cd02999 PDI_a_ERp44_like PDIa 99.6 2E-15 4.3E-20 114.1 10.2 84 176-262 16-100 (100)
82 cd02989 Phd_like_TxnDC9 Phosdu 99.6 1.7E-15 3.7E-20 117.0 9.2 90 31-122 5-95 (113)
83 cd02954 DIM1 Dim1 family; Dim1 99.6 1.7E-15 3.7E-20 114.9 8.2 86 168-254 3-89 (114)
84 cd02997 PDI_a_PDIR PDIa family 99.6 5.1E-15 1.1E-19 113.5 10.9 99 162-262 2-104 (104)
85 cd02984 TRX_PICOT TRX domain, 99.6 4.1E-15 8.8E-20 112.4 9.5 92 37-129 2-94 (97)
86 PLN02309 5'-adenylylsulfate re 99.6 5.2E-15 1.1E-19 139.6 12.2 107 28-134 343-456 (457)
87 TIGR00424 APS_reduc 5'-adenyly 99.6 5E-15 1.1E-19 139.8 12.0 106 28-133 349-461 (463)
88 cd02961 PDI_a_family Protein D 99.6 5.6E-15 1.2E-19 112.4 10.2 98 164-262 2-101 (101)
89 PHA02278 thioredoxin-like prot 99.6 5E-15 1.1E-19 111.7 9.4 92 168-261 5-100 (103)
90 TIGR01068 thioredoxin thioredo 99.6 9.5E-15 2.1E-19 111.2 11.0 99 166-265 2-100 (101)
91 PRK10996 thioredoxin 2; Provis 99.6 1.3E-14 2.7E-19 116.7 11.9 105 159-265 34-138 (139)
92 PTZ00051 thioredoxin; Provisio 99.6 6.1E-15 1.3E-19 111.6 9.4 87 33-121 3-90 (98)
93 cd02986 DLP Dim1 family, Dim1- 99.6 9.1E-15 2E-19 109.8 9.3 77 38-114 3-80 (114)
94 cd02965 HyaE HyaE family; HyaE 99.6 2.1E-14 4.6E-19 108.1 10.9 98 160-259 10-109 (111)
95 PF13848 Thioredoxin_6: Thiore 99.6 3.3E-13 7.1E-18 114.9 18.9 173 65-264 7-184 (184)
96 cd03000 PDI_a_TMX3 PDIa family 99.6 3.1E-14 6.7E-19 108.9 11.2 93 168-264 7-102 (104)
97 cd02985 TRX_CDSP32 TRX family, 99.6 2.7E-14 5.8E-19 108.8 10.5 94 167-263 3-100 (103)
98 cd02947 TRX_family TRX family; 99.5 3.2E-14 6.9E-19 106.3 9.2 91 39-131 2-92 (93)
99 PLN02309 5'-adenylylsulfate re 99.5 5.6E-14 1.2E-18 132.7 12.8 107 158-264 343-455 (457)
100 cd02975 PfPDO_like_N Pyrococcu 99.5 4.2E-14 9E-19 109.4 9.8 90 45-135 19-110 (113)
101 TIGR00424 APS_reduc 5'-adenyly 99.5 5.8E-14 1.3E-18 132.6 12.7 107 158-264 349-461 (463)
102 cd02992 PDI_a_QSOX PDIa family 99.5 1.4E-13 3.1E-18 106.7 12.2 98 161-258 2-108 (114)
103 cd02948 TRX_NDPK TRX domain, T 99.5 1.1E-13 2.3E-18 105.3 10.9 95 166-264 6-101 (102)
104 cd02962 TMX2 TMX2 family; comp 99.5 1.2E-13 2.5E-18 111.6 11.4 92 159-251 27-126 (152)
105 TIGR01295 PedC_BrcD bacterioci 99.5 5.1E-14 1.1E-18 110.1 9.0 99 30-131 6-120 (122)
106 cd02953 DsbDgamma DsbD gamma f 99.5 1.2E-13 2.5E-18 105.7 10.8 93 169-262 3-103 (104)
107 cd02951 SoxW SoxW family; SoxW 99.5 7.3E-14 1.6E-18 110.7 9.8 95 43-137 8-121 (125)
108 cd02987 Phd_like_Phd Phosducin 99.5 7E-14 1.5E-18 116.4 9.8 90 29-120 61-153 (175)
109 cd02957 Phd_like Phosducin (Ph 99.5 1.1E-13 2.4E-18 107.4 9.4 89 160-251 4-94 (113)
110 KOG0907 Thioredoxin [Posttrans 99.5 1E-13 2.2E-18 104.6 8.7 86 176-264 19-104 (106)
111 cd02950 TxlA TRX-like protein 99.5 4.4E-13 9.6E-18 108.0 12.2 101 168-269 11-113 (142)
112 cd02949 TRX_NTR TRX domain, no 99.5 3.2E-13 7E-18 101.8 10.3 92 170-262 5-96 (97)
113 cd02989 Phd_like_TxnDC9 Phosdu 99.5 9.4E-13 2E-17 101.7 12.2 100 160-262 4-112 (113)
114 PLN00410 U5 snRNP protein, DIM 99.5 5.8E-13 1.2E-17 105.2 10.8 99 167-265 11-119 (142)
115 cd02982 PDI_b'_family Protein 99.4 5E-13 1.1E-17 102.1 9.3 87 48-134 12-102 (103)
116 cd02984 TRX_PICOT TRX domain, 99.4 8.9E-13 1.9E-17 99.5 10.0 93 168-262 3-96 (97)
117 KOG0908 Thioredoxin-like prote 99.4 3.7E-13 8.1E-18 112.5 8.1 98 36-135 8-106 (288)
118 PTZ00051 thioredoxin; Provisio 99.4 1.1E-12 2.4E-17 99.2 9.9 93 162-258 2-95 (98)
119 cd02986 DLP Dim1 family, Dim1- 99.4 9.6E-13 2.1E-17 98.9 9.2 76 169-244 4-80 (114)
120 TIGR00411 redox_disulf_1 small 99.4 1.2E-12 2.6E-17 95.5 8.4 80 51-134 2-81 (82)
121 cd02988 Phd_like_VIAF Phosduci 99.4 1E-12 2.2E-17 110.8 9.2 89 29-121 81-171 (192)
122 cd02987 Phd_like_Phd Phosducin 99.4 6.6E-12 1.4E-16 104.6 13.1 103 159-264 61-173 (175)
123 cd02975 PfPDO_like_N Pyrococcu 99.4 4.1E-12 8.8E-17 98.2 10.2 89 177-266 21-110 (113)
124 PRK15412 thiol:disulfide inter 99.4 1.4E-11 3E-16 104.4 14.0 91 45-138 65-179 (185)
125 TIGR03143 AhpF_homolog putativ 99.4 4.4E-11 9.6E-16 118.8 19.6 187 47-262 365-554 (555)
126 cd02952 TRP14_like Human TRX-r 99.4 2.3E-12 5.1E-17 99.1 7.9 77 38-114 10-102 (119)
127 cd02982 PDI_b'_family Protein 99.4 6.9E-12 1.5E-16 95.8 10.0 88 178-265 12-102 (103)
128 PRK14018 trifunctional thiored 99.3 8.3E-12 1.8E-16 119.7 12.2 90 44-133 52-171 (521)
129 TIGR02738 TrbB type-F conjugat 99.3 1.7E-11 3.7E-16 99.4 12.2 87 45-133 47-151 (153)
130 cd02947 TRX_family TRX family; 99.3 8.8E-12 1.9E-16 92.9 9.9 91 169-262 2-92 (93)
131 PF01216 Calsequestrin: Calseq 99.3 2E-10 4.4E-15 101.2 18.9 197 159-371 33-249 (383)
132 KOG1731 FAD-dependent sulfhydr 99.3 1.1E-11 2.5E-16 115.9 11.8 209 157-369 36-269 (606)
133 cd02951 SoxW SoxW family; SoxW 99.3 1.5E-11 3.3E-16 97.4 10.7 92 175-266 10-119 (125)
134 cd02959 ERp19 Endoplasmic reti 99.3 9E-12 2E-16 96.7 8.6 92 43-134 14-112 (117)
135 TIGR01295 PedC_BrcD bacterioci 99.3 1.4E-11 3E-16 96.4 9.5 99 160-262 6-120 (122)
136 PRK03147 thiol-disulfide oxido 99.3 4.2E-11 9E-16 100.8 13.1 103 30-133 44-170 (173)
137 PTZ00062 glutaredoxin; Provisi 99.3 1.2E-10 2.6E-15 98.5 14.4 158 166-342 5-175 (204)
138 TIGR00411 redox_disulf_1 small 99.2 5.9E-11 1.3E-15 86.4 9.6 80 181-265 2-81 (82)
139 cd02988 Phd_like_VIAF Phosduci 99.2 1.2E-10 2.7E-15 98.2 12.2 102 158-264 80-190 (192)
140 PF13098 Thioredoxin_2: Thiore 99.2 1.2E-11 2.5E-16 96.1 5.5 86 46-131 3-112 (112)
141 cd02955 SSP411 TRX domain, SSP 99.2 1.1E-10 2.4E-15 90.9 9.3 99 35-134 3-118 (124)
142 PRK00293 dipZ thiol:disulfide 99.2 3.6E-10 7.8E-15 111.8 13.8 102 32-134 454-569 (571)
143 PHA02125 thioredoxin-like prot 99.2 8.9E-11 1.9E-15 83.5 7.0 61 52-121 2-62 (75)
144 cd02952 TRP14_like Human TRX-r 99.2 2.8E-10 6E-15 87.7 9.8 77 167-243 9-101 (119)
145 KOG0908 Thioredoxin-like prote 99.2 1.5E-10 3.2E-15 97.2 8.9 99 166-267 8-107 (288)
146 TIGR00412 redox_disulf_2 small 99.2 1.2E-10 2.6E-15 83.0 7.2 72 52-130 2-74 (76)
147 TIGR00385 dsbE periplasmic pro 99.1 7.8E-10 1.7E-14 92.7 11.1 87 46-135 61-171 (173)
148 COG2143 Thioredoxin-related pr 99.1 1.4E-09 2.9E-14 84.6 10.9 90 43-132 37-146 (182)
149 cd03010 TlpA_like_DsbE TlpA-li 99.1 6E-10 1.3E-14 88.5 8.9 79 47-127 24-126 (127)
150 cd03008 TryX_like_RdCVF Trypar 99.1 6.3E-10 1.4E-14 89.1 8.9 68 47-114 24-124 (146)
151 PF13905 Thioredoxin_8: Thiore 99.1 8.5E-10 1.8E-14 82.7 9.1 66 48-113 1-93 (95)
152 cd03009 TryX_like_TryX_NRX Try 99.1 1.1E-09 2.4E-14 87.4 9.5 68 47-114 17-111 (131)
153 PRK13728 conjugal transfer pro 99.1 3.8E-09 8.2E-14 87.1 12.5 83 52-136 73-172 (181)
154 cd02959 ERp19 Endoplasmic reti 99.0 8.2E-10 1.8E-14 85.8 7.3 84 174-257 15-104 (117)
155 TIGR02740 TraF-like TraF-like 99.0 1.2E-09 2.5E-14 97.7 9.2 86 47-134 165-263 (271)
156 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.7E-09 3.8E-14 85.3 9.0 94 33-129 6-120 (123)
157 cd02958 UAS UAS family; UAS is 99.0 2.7E-09 5.9E-14 82.8 9.6 93 43-135 12-111 (114)
158 cd02964 TryX_like_family Trypa 99.0 1.8E-09 3.8E-14 86.4 8.6 68 47-114 16-111 (132)
159 cd02966 TlpA_like_family TlpA- 99.0 2.3E-09 5E-14 83.2 8.6 85 35-120 7-116 (116)
160 cd02973 TRX_GRX_like Thioredox 99.0 2.1E-09 4.5E-14 74.8 7.4 57 51-108 2-58 (67)
161 TIGR01626 ytfJ_HI0045 conserve 99.0 6.5E-09 1.4E-13 86.3 11.3 80 47-129 58-174 (184)
162 KOG0914 Thioredoxin-like prote 99.0 2.6E-09 5.7E-14 87.7 8.6 99 22-120 116-223 (265)
163 PRK11509 hydrogenase-1 operon 99.0 4.4E-09 9.5E-14 81.8 9.4 103 32-135 19-124 (132)
164 PF13098 Thioredoxin_2: Thiore 98.9 1.6E-09 3.5E-14 84.0 5.9 87 176-262 3-112 (112)
165 TIGR00412 redox_disulf_2 small 98.9 7.8E-09 1.7E-13 73.6 7.7 72 183-262 3-75 (76)
166 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 8.1E-09 1.7E-13 75.7 7.4 75 47-126 11-85 (89)
167 PRK15317 alkyl hydroperoxide r 98.9 1.5E-07 3.3E-12 93.1 18.6 178 48-265 18-197 (517)
168 TIGR02740 TraF-like TraF-like 98.9 1.8E-08 3.9E-13 90.1 10.7 87 178-266 166-264 (271)
169 PLN02919 haloacid dehalogenase 98.9 1.8E-08 3.8E-13 106.6 12.2 92 47-138 419-539 (1057)
170 COG4232 Thiol:disulfide interc 98.9 1.5E-08 3.2E-13 96.6 10.3 100 33-134 457-567 (569)
171 smart00594 UAS UAS domain. 98.9 1.9E-08 4.1E-13 78.9 9.3 94 38-131 17-121 (122)
172 cd03072 PDI_b'_ERp44 PDIb' fam 98.9 1.2E-08 2.6E-13 78.2 8.0 76 296-372 32-111 (111)
173 PHA02125 thioredoxin-like prot 98.9 1.3E-08 2.7E-13 72.4 7.5 50 182-237 2-51 (75)
174 cd02955 SSP411 TRX domain, SSP 98.8 3.4E-08 7.4E-13 77.0 10.2 71 174-244 11-92 (124)
175 cd02973 TRX_GRX_like Thioredox 98.8 1.5E-08 3.3E-13 70.4 7.4 57 181-238 2-58 (67)
176 KOG0913 Thiol-disulfide isomer 98.8 1.7E-09 3.6E-14 90.3 2.7 107 24-134 18-125 (248)
177 cd02967 mauD Methylamine utili 98.8 9.7E-09 2.1E-13 79.8 6.7 60 47-106 20-82 (114)
178 PRK11509 hydrogenase-1 operon 98.8 5.5E-08 1.2E-12 75.7 10.7 106 161-268 18-126 (132)
179 PRK00293 dipZ thiol:disulfide 98.8 3.5E-08 7.6E-13 97.8 11.7 104 161-265 453-569 (571)
180 PF13899 Thioredoxin_7: Thiore 98.8 1.4E-08 3E-13 73.7 6.5 68 43-111 12-82 (82)
181 PRK14018 trifunctional thiored 98.8 3.6E-08 7.8E-13 94.9 10.8 90 175-264 53-171 (521)
182 cd02960 AGR Anterior Gradient 98.8 2.7E-08 5.8E-13 77.4 8.0 79 43-122 18-100 (130)
183 TIGR02738 TrbB type-F conjugat 98.8 5.7E-08 1.2E-12 78.8 10.0 85 178-264 50-151 (153)
184 PRK03147 thiol-disulfide oxido 98.8 6.6E-08 1.4E-12 81.2 10.6 88 177-264 60-170 (173)
185 cd03012 TlpA_like_DipZ_like Tl 98.8 3.8E-08 8.2E-13 78.0 8.4 75 47-121 22-125 (126)
186 TIGR03140 AhpF alkyl hydropero 98.8 6.6E-07 1.4E-11 88.4 19.0 178 48-265 19-198 (515)
187 PLN02399 phospholipid hydroper 98.8 5.4E-08 1.2E-12 84.5 9.7 102 33-135 85-234 (236)
188 PF13905 Thioredoxin_8: Thiore 98.7 7.5E-08 1.6E-12 72.1 9.2 66 178-243 1-93 (95)
189 PTZ00056 glutathione peroxidas 98.7 1E-07 2.2E-12 81.5 9.9 104 32-136 24-179 (199)
190 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 9.3E-08 2E-12 70.1 8.4 75 178-258 12-86 (89)
191 TIGR02661 MauD methylamine deh 98.7 2.7E-07 5.8E-12 78.4 12.3 76 46-122 72-165 (189)
192 cd03008 TryX_like_RdCVF Trypar 98.7 1.2E-07 2.7E-12 75.9 9.4 67 177-243 24-123 (146)
193 cd03010 TlpA_like_DsbE TlpA-li 98.7 7.5E-08 1.6E-12 76.4 8.1 79 177-257 24-125 (127)
194 cd02958 UAS UAS family; UAS is 98.7 2.3E-07 4.9E-12 72.0 10.5 93 174-266 13-111 (114)
195 PF08534 Redoxin: Redoxin; In 98.7 9.5E-08 2.1E-12 77.8 8.7 88 35-123 16-136 (146)
196 cd03009 TryX_like_TryX_NRX Try 98.7 1.2E-07 2.7E-12 75.6 9.1 68 177-244 17-111 (131)
197 TIGR00385 dsbE periplasmic pro 98.7 1.5E-07 3.3E-12 78.8 9.5 87 177-266 62-171 (173)
198 PRK15412 thiol:disulfide inter 98.6 2.7E-07 5.9E-12 78.2 10.5 88 177-267 67-177 (185)
199 cd02964 TryX_like_family Trypa 98.6 2E-07 4.4E-12 74.4 9.1 67 177-243 16-110 (132)
200 cd02966 TlpA_like_family TlpA- 98.6 1.6E-07 3.4E-12 72.8 8.3 74 178-251 19-116 (116)
201 cd02981 PDI_b_family Protein D 98.6 6.8E-07 1.5E-11 67.1 10.6 94 164-264 3-96 (97)
202 PLN02412 probable glutathione 98.6 2.3E-07 5.1E-12 77.1 8.8 89 47-135 28-164 (167)
203 cd03073 PDI_b'_ERp72_ERp57 PDI 98.6 2.4E-07 5.1E-12 70.9 8.0 72 296-369 36-111 (111)
204 KOG0914 Thioredoxin-like prote 98.6 1.1E-07 2.5E-12 78.3 6.4 85 160-244 124-217 (265)
205 cd02960 AGR Anterior Gradient 98.6 2.8E-07 6.1E-12 71.8 8.3 80 172-252 17-99 (130)
206 cd03011 TlpA_like_ScsD_MtbDsbE 98.6 4.1E-07 8.9E-12 71.7 9.3 81 177-260 19-120 (123)
207 cd02967 mauD Methylamine utili 98.6 3.7E-07 7.9E-12 70.9 8.7 40 177-216 20-59 (114)
208 TIGR03143 AhpF_homolog putativ 98.5 3.4E-06 7.3E-11 84.2 16.5 187 170-365 357-554 (555)
209 smart00594 UAS UAS domain. 98.5 1.2E-06 2.6E-11 68.7 10.5 98 165-262 14-121 (122)
210 cd02969 PRX_like1 Peroxiredoxi 98.5 1.3E-06 2.7E-11 73.2 10.8 69 46-114 23-121 (171)
211 PRK13728 conjugal transfer pro 98.5 1.1E-06 2.3E-11 72.7 9.5 84 182-267 73-172 (181)
212 COG0526 TrxA Thiol-disulfide i 98.5 8.4E-07 1.8E-11 69.0 8.4 73 48-120 32-107 (127)
213 cd00340 GSH_Peroxidase Glutath 98.5 5.5E-07 1.2E-11 73.8 7.4 42 47-89 21-63 (152)
214 PLN02919 haloacid dehalogenase 98.4 9.9E-07 2.1E-11 93.6 10.6 93 177-269 419-539 (1057)
215 TIGR02540 gpx7 putative glutat 98.4 1E-06 2.3E-11 72.2 8.5 98 35-133 10-151 (153)
216 KOG2501 Thioredoxin, nucleored 98.4 6E-07 1.3E-11 71.3 6.1 67 47-113 32-126 (157)
217 KOG0911 Glutaredoxin-related p 98.4 1.3E-06 2.9E-11 73.0 8.3 172 47-238 16-200 (227)
218 cd01659 TRX_superfamily Thiore 98.4 1.3E-06 2.9E-11 59.6 7.2 60 52-112 1-63 (69)
219 KOG0913 Thiol-disulfide isomer 98.4 1.6E-07 3.5E-12 78.6 2.4 102 159-265 23-125 (248)
220 PF13899 Thioredoxin_7: Thiore 98.4 1.1E-06 2.4E-11 63.7 6.5 66 174-240 13-81 (82)
221 cd03012 TlpA_like_DipZ_like Tl 98.3 2.5E-06 5.4E-11 67.5 8.5 75 177-251 22-124 (126)
222 cd02983 P5_C P5 family, C-term 98.3 1E-05 2.2E-10 63.9 11.8 111 160-270 2-119 (130)
223 COG4232 Thiol:disulfide interc 98.3 2.7E-06 5.8E-11 81.5 9.7 103 163-265 457-567 (569)
224 TIGR02196 GlrX_YruB Glutaredox 98.3 2.1E-06 4.5E-11 60.7 6.5 68 52-131 2-73 (74)
225 PF13192 Thioredoxin_3: Thiore 98.3 3E-06 6.5E-11 60.3 7.2 73 53-132 3-76 (76)
226 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 5.1E-06 1.1E-10 65.4 7.4 67 47-113 24-119 (124)
227 cd03017 PRX_BCP Peroxiredoxin 98.2 7E-06 1.5E-10 66.2 8.3 83 47-129 22-137 (140)
228 PF07912 ERp29_N: ERp29, N-ter 98.2 5.7E-05 1.2E-09 57.1 12.2 105 160-267 4-120 (126)
229 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 2.4E-05 5.2E-10 60.0 10.6 103 162-267 1-109 (111)
230 COG2143 Thioredoxin-related pr 98.2 2.1E-05 4.6E-10 61.6 9.3 86 174-259 38-142 (182)
231 cd02991 UAS_ETEA UAS family, E 98.1 1E-05 2.2E-10 62.4 7.6 92 43-135 12-113 (116)
232 TIGR02661 MauD methylamine deh 98.1 2E-05 4.2E-10 67.0 10.0 86 177-264 73-177 (189)
233 PF08534 Redoxin: Redoxin; In 98.1 1.7E-05 3.7E-10 64.5 9.2 78 177-254 27-136 (146)
234 KOG2603 Oligosaccharyltransfer 98.1 6.2E-05 1.3E-09 66.2 12.9 108 27-134 37-165 (331)
235 TIGR02200 GlrX_actino Glutared 98.1 9.4E-06 2E-10 57.9 6.3 56 52-114 2-62 (77)
236 PTZ00256 glutathione peroxidas 98.1 2.6E-05 5.6E-10 65.9 10.0 101 34-135 27-181 (183)
237 PF13728 TraF: F plasmid trans 98.1 2E-05 4.4E-10 67.9 9.2 82 178-261 120-213 (215)
238 KOG1672 ATP binding protein [P 98.1 5E-06 1.1E-10 67.6 5.0 93 30-124 66-159 (211)
239 PF13728 TraF: F plasmid trans 98.1 1.7E-05 3.7E-10 68.4 8.6 82 47-130 119-213 (215)
240 PF13192 Thioredoxin_3: Thiore 98.1 3E-05 6.4E-10 55.1 8.2 70 185-262 5-75 (76)
241 cd03066 PDI_b_Calsequestrin_mi 98.1 9.9E-05 2.1E-09 55.8 11.4 96 162-265 2-100 (102)
242 PLN02399 phospholipid hydroper 98.1 3.5E-05 7.6E-10 67.1 10.0 90 177-266 98-234 (236)
243 cd02969 PRX_like1 Peroxiredoxi 98.1 5.7E-05 1.2E-09 63.2 11.0 91 177-269 24-155 (171)
244 PF02114 Phosducin: Phosducin; 98.0 5E-05 1.1E-09 67.4 10.7 105 159-266 124-238 (265)
245 PRK00522 tpx lipid hydroperoxi 98.0 3.3E-05 7.1E-10 64.2 9.1 42 47-89 43-85 (167)
246 KOG2501 Thioredoxin, nucleored 98.0 1.7E-05 3.6E-10 63.2 6.8 68 177-244 32-127 (157)
247 PF03190 Thioredox_DsbH: Prote 98.0 3.1E-05 6.8E-10 62.7 8.4 82 31-113 21-113 (163)
248 cd01659 TRX_superfamily Thiore 98.0 2.6E-05 5.7E-10 52.9 7.1 60 182-242 1-63 (69)
249 PTZ00056 glutathione peroxidas 98.0 4E-05 8.7E-10 65.5 9.4 43 177-219 38-81 (199)
250 cd03015 PRX_Typ2cys Peroxiredo 98.0 3.9E-05 8.4E-10 64.3 9.2 86 47-132 28-154 (173)
251 COG0526 TrxA Thiol-disulfide i 98.0 3.9E-05 8.4E-10 59.3 8.8 67 178-244 32-101 (127)
252 TIGR02180 GRX_euk Glutaredoxin 98.0 1.4E-05 3.1E-10 58.0 5.8 58 52-113 1-63 (84)
253 cd03069 PDI_b_ERp57 PDIb famil 98.0 8.8E-05 1.9E-09 56.3 10.1 89 168-265 9-103 (104)
254 PF02114 Phosducin: Phosducin; 98.0 2.3E-05 4.9E-10 69.6 7.3 89 30-120 125-216 (265)
255 TIGR02196 GlrX_YruB Glutaredox 98.0 3.6E-05 7.7E-10 54.2 7.0 68 182-262 2-73 (74)
256 KOG2603 Oligosaccharyltransfer 98.0 0.00017 3.7E-09 63.5 12.3 113 158-270 38-170 (331)
257 cd02970 PRX_like2 Peroxiredoxi 97.9 6.2E-05 1.4E-09 61.3 8.6 45 48-92 24-69 (149)
258 PRK09437 bcp thioredoxin-depen 97.9 8E-05 1.7E-09 61.1 9.2 93 33-126 16-144 (154)
259 cd02981 PDI_b_family Protein D 97.9 0.00017 3.7E-09 53.9 10.1 93 34-133 3-96 (97)
260 cd03074 PDI_b'_Calsequestrin_C 97.9 0.00011 2.3E-09 53.7 8.3 73 296-369 38-120 (120)
261 PRK10954 periplasmic protein d 97.9 0.00012 2.7E-09 63.1 10.4 39 48-86 37-78 (207)
262 TIGR03137 AhpC peroxiredoxin. 97.9 8.1E-05 1.8E-09 63.1 8.8 68 47-114 30-131 (187)
263 PF07912 ERp29_N: ERp29, N-ter 97.9 0.00029 6.2E-09 53.3 10.4 102 30-134 4-118 (126)
264 PLN02412 probable glutathione 97.9 0.00013 2.8E-09 60.6 9.7 43 177-219 28-71 (167)
265 cd03073 PDI_b'_ERp72_ERp57 PDI 97.9 0.00016 3.5E-09 55.3 9.4 99 34-134 3-110 (111)
266 PRK10606 btuE putative glutath 97.9 9.5E-05 2.1E-09 62.0 8.8 55 33-89 11-66 (183)
267 TIGR02739 TraF type-F conjugat 97.8 9.3E-05 2E-09 65.0 8.7 87 47-135 149-248 (256)
268 PRK11200 grxA glutaredoxin 1; 97.8 7.9E-05 1.7E-09 54.2 7.0 75 51-134 2-82 (85)
269 PF14595 Thioredoxin_9: Thiore 97.8 5.3E-05 1.2E-09 59.6 6.2 83 35-118 28-114 (129)
270 TIGR01626 ytfJ_HI0045 conserve 97.8 9.4E-05 2E-09 61.7 7.9 81 177-260 58-174 (184)
271 cd03014 PRX_Atyp2cys Peroxired 97.8 0.00011 2.4E-09 59.4 7.8 57 47-104 25-85 (143)
272 TIGR02180 GRX_euk Glutaredoxin 97.8 6.3E-05 1.4E-09 54.6 5.7 55 182-238 1-60 (84)
273 TIGR02540 gpx7 putative glutat 97.8 0.00017 3.7E-09 59.1 8.8 42 177-218 21-63 (153)
274 PF06110 DUF953: Eukaryotic pr 97.7 0.0002 4.3E-09 55.0 8.1 67 46-112 17-99 (119)
275 TIGR02739 TraF type-F conjugat 97.7 0.00032 7E-09 61.7 10.4 89 178-266 150-248 (256)
276 PRK10877 protein disulfide iso 97.7 9.7E-05 2.1E-09 64.7 7.1 80 47-133 106-229 (232)
277 PRK13703 conjugal pilus assemb 97.7 0.00018 3.9E-09 62.8 8.7 89 47-135 142-241 (248)
278 cd03018 PRX_AhpE_like Peroxire 97.7 0.00023 5E-09 57.9 9.0 41 49-89 29-71 (149)
279 cd00340 GSH_Peroxidase Glutath 97.7 0.00013 2.9E-09 59.6 7.5 41 178-219 22-63 (152)
280 TIGR02200 GlrX_actino Glutared 97.7 0.00017 3.7E-09 51.3 7.2 54 182-242 2-60 (77)
281 cd02971 PRX_family Peroxiredox 97.7 0.00022 4.7E-09 57.4 8.6 43 47-89 21-65 (140)
282 cd02968 SCO SCO (an acronym fo 97.7 0.00016 3.4E-09 58.4 7.2 43 47-89 21-68 (142)
283 cd02991 UAS_ETEA UAS family, E 97.6 0.00054 1.2E-08 52.9 9.4 92 174-266 13-113 (116)
284 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00031 6.6E-09 50.9 7.2 93 38-132 10-109 (112)
285 PF00578 AhpC-TSA: AhpC/TSA fa 97.6 0.00037 7.9E-09 54.7 8.7 67 177-243 24-119 (124)
286 cd03068 PDI_b_ERp72 PDIb famil 97.6 0.00082 1.8E-08 51.1 9.8 97 162-265 2-107 (107)
287 PRK13703 conjugal pilus assemb 97.6 0.0005 1.1E-08 60.1 9.6 89 178-266 143-241 (248)
288 cd03017 PRX_BCP Peroxiredoxin 97.6 0.00032 7E-09 56.4 7.9 81 178-258 23-135 (140)
289 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00077 1.7E-08 48.8 8.5 94 168-264 10-110 (112)
290 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00031 6.7E-09 52.6 6.5 91 30-121 9-101 (107)
291 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00014 3.1E-09 62.2 5.5 76 47-130 76-196 (197)
292 PTZ00256 glutathione peroxidas 97.5 0.00084 1.8E-08 56.7 9.9 42 178-219 40-83 (183)
293 KOG3414 Component of the U4/U6 97.5 0.00065 1.4E-08 51.3 7.8 77 38-114 12-89 (142)
294 PRK15000 peroxidase; Provision 97.5 0.00068 1.5E-08 58.0 9.2 86 47-132 33-159 (200)
295 PF14595 Thioredoxin_9: Thiore 97.5 0.00019 4.2E-09 56.5 5.3 79 165-244 28-109 (129)
296 PRK10382 alkyl hydroperoxide r 97.5 0.0008 1.7E-08 56.8 9.3 86 47-132 30-153 (187)
297 PRK11657 dsbG disulfide isomer 97.5 0.00068 1.5E-08 60.2 8.9 82 48-131 117-248 (251)
298 PRK13190 putative peroxiredoxi 97.4 0.00083 1.8E-08 57.7 8.8 88 47-134 26-153 (202)
299 KOG3425 Uncharacterized conser 97.4 0.00076 1.6E-08 50.6 7.2 65 47-111 24-104 (128)
300 cd03066 PDI_b_Calsequestrin_mi 97.4 0.0019 4.1E-08 48.7 9.7 87 275-368 2-100 (102)
301 PF13462 Thioredoxin_4: Thiore 97.4 0.0019 4.1E-08 53.3 10.0 81 47-132 11-161 (162)
302 PF06110 DUF953: Eukaryotic pr 97.4 0.001 2.3E-08 51.1 7.6 66 177-242 18-99 (119)
303 PF00462 Glutaredoxin: Glutare 97.3 0.001 2.2E-08 44.6 6.7 51 52-108 1-55 (60)
304 cd02976 NrdH NrdH-redoxin (Nrd 97.3 0.00083 1.8E-08 46.9 6.5 51 52-108 2-56 (73)
305 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0015 3.2E-08 53.3 8.7 32 47-78 4-35 (154)
306 PRK15317 alkyl hydroperoxide r 97.3 0.011 2.3E-07 58.8 16.1 166 179-367 20-196 (517)
307 cd02970 PRX_like2 Peroxiredoxi 97.3 0.0012 2.6E-08 53.6 7.9 46 178-223 24-70 (149)
308 PRK11200 grxA glutaredoxin 1; 97.3 0.0009 2E-08 48.6 6.4 76 181-266 2-83 (85)
309 PF05768 DUF836: Glutaredoxin- 97.3 0.00064 1.4E-08 48.8 5.4 78 52-132 2-81 (81)
310 KOG0911 Glutaredoxin-related p 97.3 0.0031 6.6E-08 53.2 10.0 80 174-255 13-92 (227)
311 TIGR02183 GRXA Glutaredoxin, G 97.3 0.00078 1.7E-08 49.0 5.8 73 52-133 2-80 (86)
312 PF03190 Thioredox_DsbH: Prote 97.3 0.0016 3.5E-08 52.8 8.0 106 160-267 18-145 (163)
313 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.0023 5E-08 53.6 9.3 87 178-264 29-155 (173)
314 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.00097 2.1E-08 48.0 5.8 56 52-113 2-62 (82)
315 TIGR03137 AhpC peroxiredoxin. 97.2 0.0029 6.2E-08 53.6 9.3 86 178-263 31-153 (187)
316 PRK00522 tpx lipid hydroperoxi 97.2 0.0035 7.5E-08 52.1 9.5 42 178-220 44-86 (167)
317 TIGR02190 GlrX-dom Glutaredoxi 97.2 0.0014 3.1E-08 46.8 6.1 59 47-113 5-66 (79)
318 TIGR02194 GlrX_NrdH Glutaredox 97.1 0.0015 3.4E-08 45.7 6.1 51 52-108 1-54 (72)
319 PRK13599 putative peroxiredoxi 97.1 0.0054 1.2E-07 53.1 10.5 68 47-114 27-131 (215)
320 PF11009 DUF2847: Protein of u 97.1 0.003 6.5E-08 47.1 7.6 77 37-114 7-90 (105)
321 PF05768 DUF836: Glutaredoxin- 97.1 0.0026 5.5E-08 45.7 7.1 79 182-263 2-81 (81)
322 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.004 8.7E-08 47.1 8.6 85 276-368 3-103 (104)
323 PF07449 HyaE: Hydrogenase-1 e 97.1 0.0016 3.4E-08 48.9 5.9 83 160-243 9-93 (107)
324 KOG1672 ATP binding protein [P 97.1 0.001 2.3E-08 54.5 5.1 82 160-243 66-148 (211)
325 cd03019 DsbA_DsbA DsbA family, 97.1 0.0037 8.1E-08 52.4 8.8 38 47-84 14-51 (178)
326 cd02968 SCO SCO (an acronym fo 97.0 0.0026 5.5E-08 51.2 7.4 44 177-220 21-69 (142)
327 PTZ00137 2-Cys peroxiredoxin; 97.0 0.005 1.1E-07 54.6 9.4 86 47-132 97-222 (261)
328 PF02966 DIM1: Mitosis protein 97.0 0.006 1.3E-07 47.0 8.4 74 39-113 10-85 (133)
329 KOG3414 Component of the U4/U6 97.0 0.0053 1.1E-07 46.5 7.9 67 177-243 22-88 (142)
330 TIGR03140 AhpF alkyl hydropero 97.0 0.036 7.8E-07 55.1 16.2 168 179-368 20-198 (515)
331 KOG3425 Uncharacterized conser 96.9 0.0045 9.8E-08 46.5 7.1 64 178-241 25-104 (128)
332 cd02066 GRX_family Glutaredoxi 96.9 0.0028 6.1E-08 43.9 5.9 54 52-113 2-59 (72)
333 cd03419 GRX_GRXh_1_2_like Glut 96.9 0.0025 5.4E-08 45.8 5.6 53 182-238 2-59 (82)
334 PRK13189 peroxiredoxin; Provis 96.9 0.009 1.9E-07 52.0 10.0 86 47-132 34-160 (222)
335 PF00462 Glutaredoxin: Glutare 96.9 0.0035 7.5E-08 42.0 5.8 51 182-238 1-55 (60)
336 cd03027 GRX_DEP Glutaredoxin ( 96.9 0.0048 1E-07 43.3 6.6 54 52-113 3-60 (73)
337 cd02976 NrdH NrdH-redoxin (Nrd 96.9 0.0038 8.3E-08 43.4 6.1 51 182-238 2-56 (73)
338 PRK13191 putative peroxiredoxi 96.8 0.0068 1.5E-07 52.5 8.6 87 47-133 32-159 (215)
339 TIGR02183 GRXA Glutaredoxin, G 96.8 0.0035 7.5E-08 45.6 5.7 75 182-266 2-82 (86)
340 cd02971 PRX_family Peroxiredox 96.8 0.0073 1.6E-07 48.4 8.2 44 177-220 21-66 (140)
341 cd03418 GRX_GRXb_1_3_like Glut 96.8 0.0058 1.3E-07 43.0 6.6 54 52-113 2-60 (75)
342 PTZ00253 tryparedoxin peroxida 96.8 0.011 2.4E-07 50.6 9.5 67 47-113 35-137 (199)
343 PRK09437 bcp thioredoxin-depen 96.8 0.009 1.9E-07 48.9 8.6 44 177-220 29-74 (154)
344 PRK10329 glutaredoxin-like pro 96.8 0.0064 1.4E-07 43.6 6.7 70 52-133 3-75 (81)
345 cd03018 PRX_AhpE_like Peroxire 96.8 0.0058 1.3E-07 49.6 7.4 42 179-220 29-72 (149)
346 PRK10877 protein disulfide iso 96.8 0.0077 1.7E-07 52.8 8.4 81 177-265 106-230 (232)
347 TIGR02181 GRX_bact Glutaredoxi 96.7 0.0042 9.1E-08 44.3 5.6 54 52-113 1-58 (79)
348 cd03016 PRX_1cys Peroxiredoxin 96.7 0.013 2.9E-07 50.3 9.6 40 50-89 28-68 (203)
349 TIGR02189 GlrX-like_plant Glut 96.6 0.0047 1E-07 46.2 5.4 56 51-114 9-71 (99)
350 TIGR02190 GlrX-dom Glutaredoxi 96.6 0.0067 1.5E-07 43.3 5.9 54 179-238 7-63 (79)
351 PRK15000 peroxidase; Provision 96.6 0.016 3.5E-07 49.6 9.1 44 177-220 33-78 (200)
352 cd03068 PDI_b_ERp72 PDIb famil 96.6 0.017 3.7E-07 43.9 8.3 86 275-367 2-106 (107)
353 PRK13190 putative peroxiredoxi 96.6 0.015 3.3E-07 49.9 8.9 87 178-264 27-152 (202)
354 cd02972 DsbA_family DsbA famil 96.6 0.0079 1.7E-07 44.4 6.4 59 52-110 1-91 (98)
355 cd03014 PRX_Atyp2cys Peroxired 96.6 0.0092 2E-07 48.1 7.1 44 177-221 25-69 (143)
356 PRK10382 alkyl hydroperoxide r 96.5 0.024 5.2E-07 47.9 9.7 85 178-262 31-152 (187)
357 cd03071 PDI_b'_NRX PDIb' famil 96.5 0.022 4.8E-07 41.9 7.9 58 311-369 56-115 (116)
358 cd02066 GRX_family Glutaredoxi 96.5 0.0073 1.6E-07 41.8 5.6 51 182-238 2-56 (72)
359 TIGR02194 GlrX_NrdH Glutaredox 96.5 0.0083 1.8E-07 41.9 5.7 66 183-260 2-70 (72)
360 cd03029 GRX_hybridPRX5 Glutare 96.5 0.0097 2.1E-07 41.5 6.0 54 52-113 3-59 (72)
361 COG0695 GrxC Glutaredoxin and 96.5 0.0084 1.8E-07 42.8 5.7 51 52-108 3-59 (80)
362 PHA03050 glutaredoxin; Provisi 96.4 0.0065 1.4E-07 46.2 4.9 58 52-114 15-79 (108)
363 PRK10329 glutaredoxin-like pro 96.3 0.042 9.1E-07 39.3 8.6 73 181-266 2-77 (81)
364 cd03020 DsbA_DsbC_DsbG DsbA fa 96.3 0.013 2.8E-07 50.2 6.9 76 177-261 76-196 (197)
365 PRK11657 dsbG disulfide isomer 96.3 0.025 5.3E-07 50.3 8.6 82 178-262 117-248 (251)
366 PF11009 DUF2847: Protein of u 96.2 0.019 4.1E-07 42.9 6.4 77 167-243 7-89 (105)
367 TIGR02189 GlrX-like_plant Glut 96.2 0.013 2.8E-07 43.8 5.5 51 182-238 10-67 (99)
368 cd03016 PRX_1cys Peroxiredoxin 96.2 0.032 7E-07 47.9 8.7 41 180-220 28-69 (203)
369 TIGR02181 GRX_bact Glutaredoxi 96.2 0.012 2.7E-07 41.8 5.3 51 182-238 1-55 (79)
370 cd03418 GRX_GRXb_1_3_like Glut 96.2 0.02 4.3E-07 40.2 6.3 51 182-238 2-57 (75)
371 PHA03050 glutaredoxin; Provisi 96.1 0.015 3.2E-07 44.2 5.6 60 174-238 9-75 (108)
372 PF02966 DIM1: Mitosis protein 96.0 0.08 1.7E-06 40.9 9.0 69 170-239 11-81 (133)
373 cd03027 GRX_DEP Glutaredoxin ( 96.0 0.031 6.8E-07 39.1 6.4 51 182-238 3-57 (73)
374 PTZ00137 2-Cys peroxiredoxin; 96.0 0.063 1.4E-06 47.7 9.5 85 178-262 98-221 (261)
375 cd03029 GRX_hybridPRX5 Glutare 95.9 0.032 6.9E-07 38.9 6.0 67 181-262 2-71 (72)
376 COG0695 GrxC Glutaredoxin and 95.7 0.035 7.7E-07 39.6 5.7 51 182-238 3-59 (80)
377 PRK10638 glutaredoxin 3; Provi 95.6 0.044 9.5E-07 39.4 6.0 54 52-113 4-61 (83)
378 PRK13189 peroxiredoxin; Provis 95.6 0.084 1.8E-06 46.0 8.7 41 180-220 38-79 (222)
379 PRK13599 putative peroxiredoxi 95.5 0.09 1.9E-06 45.5 8.7 41 180-220 31-72 (215)
380 cd02972 DsbA_family DsbA famil 95.5 0.052 1.1E-06 39.9 6.4 59 182-240 1-91 (98)
381 PRK10606 btuE putative glutath 95.4 0.043 9.4E-07 46.1 6.1 42 177-219 24-66 (183)
382 KOG3171 Conserved phosducin-li 95.4 0.29 6.3E-06 41.1 10.6 82 160-243 138-222 (273)
383 TIGR00365 monothiol glutaredox 95.4 0.083 1.8E-06 39.3 6.9 48 58-113 25-76 (97)
384 PF13743 Thioredoxin_5: Thiore 95.3 0.076 1.7E-06 44.4 7.3 30 54-83 2-31 (176)
385 PRK13191 putative peroxiredoxi 95.2 0.14 3.1E-06 44.3 8.9 41 180-220 36-77 (215)
386 cd03028 GRX_PICOT_like Glutare 95.1 0.068 1.5E-06 39.1 5.8 48 58-113 21-72 (90)
387 TIGR00365 monothiol glutaredox 94.9 0.14 3.1E-06 38.0 7.1 45 188-238 25-73 (97)
388 PRK10638 glutaredoxin 3; Provi 94.9 0.083 1.8E-06 38.0 5.6 51 182-238 4-58 (83)
389 PF00837 T4_deiodinase: Iodoth 94.9 0.27 5.7E-06 42.5 9.4 63 24-86 76-140 (237)
390 KOG2640 Thioredoxin [Function 94.8 0.013 2.8E-07 52.0 1.3 128 47-207 75-203 (319)
391 PTZ00253 tryparedoxin peroxida 94.8 0.24 5.2E-06 42.4 9.1 42 178-219 36-79 (199)
392 PRK10824 glutaredoxin-4; Provi 94.8 0.11 2.3E-06 39.9 6.1 57 174-238 11-76 (115)
393 KOG3170 Conserved phosducin-li 94.7 0.52 1.1E-05 39.2 10.1 104 158-265 89-200 (240)
394 KOG3170 Conserved phosducin-li 94.0 0.22 4.8E-06 41.3 6.6 87 30-120 91-179 (240)
395 cd03028 GRX_PICOT_like Glutare 93.9 0.18 3.9E-06 36.9 5.6 45 188-238 21-69 (90)
396 PRK10824 glutaredoxin-4; Provi 93.8 0.21 4.5E-06 38.3 5.9 48 58-113 28-79 (115)
397 PRK12759 bifunctional gluaredo 93.8 0.14 3E-06 49.1 6.0 51 52-108 4-66 (410)
398 KOG1752 Glutaredoxin and relat 93.0 0.43 9.2E-06 35.8 6.3 54 181-238 15-73 (104)
399 PF13743 Thioredoxin_5: Thiore 92.8 0.23 5E-06 41.5 5.3 36 184-219 2-37 (176)
400 KOG1752 Glutaredoxin and relat 92.7 0.49 1.1E-05 35.5 6.3 57 51-113 15-76 (104)
401 PF13462 Thioredoxin_4: Thiore 92.5 0.43 9.3E-06 39.0 6.5 44 177-220 11-56 (162)
402 PF00837 T4_deiodinase: Iodoth 92.5 2.3 5E-05 36.9 10.9 59 157-216 79-140 (237)
403 KOG3171 Conserved phosducin-li 92.5 0.5 1.1E-05 39.7 6.6 86 31-118 139-227 (273)
404 cd03023 DsbA_Com1_like DsbA fa 92.4 0.36 7.8E-06 39.0 5.9 38 178-216 5-42 (154)
405 cd02974 AhpF_NTD_N Alkyl hydro 91.5 2.8 6E-05 30.9 9.0 74 178-264 19-92 (94)
406 COG1331 Highly conserved prote 91.3 1.2 2.5E-05 44.6 8.7 86 28-114 24-121 (667)
407 KOG2792 Putative cytochrome C 91.2 4.6 0.0001 35.3 11.2 90 47-136 138-276 (280)
408 KOG2640 Thioredoxin [Function 90.9 0.11 2.5E-06 46.2 1.4 86 178-266 76-162 (319)
409 cd02974 AhpF_NTD_N Alkyl hydro 90.6 3 6.5E-05 30.7 8.4 74 47-133 18-92 (94)
410 PF01323 DSBA: DSBA-like thior 90.6 2 4.4E-05 36.2 8.9 29 51-79 1-29 (193)
411 cd03019 DsbA_DsbA DsbA family, 90.5 0.51 1.1E-05 39.3 5.0 41 177-217 14-54 (178)
412 PRK12759 bifunctional gluaredo 90.5 0.63 1.4E-05 44.7 6.1 51 182-238 4-66 (410)
413 COG1999 Uncharacterized protei 89.7 3.4 7.4E-05 35.5 9.4 71 37-108 57-136 (207)
414 cd03013 PRX5_like Peroxiredoxi 89.1 1 2.2E-05 36.7 5.6 58 47-104 29-93 (155)
415 cd02978 KaiB_like KaiB-like fa 88.7 2.2 4.7E-05 29.5 6.0 58 51-108 3-61 (72)
416 PF02630 SCO1-SenC: SCO1/SenC; 88.1 1.9 4.2E-05 35.9 6.7 57 32-89 37-97 (174)
417 COG1651 DsbG Protein-disulfide 87.9 3.6 7.9E-05 36.3 8.8 29 49-77 85-113 (244)
418 cd03031 GRX_GRX_like Glutaredo 87.8 2 4.3E-05 34.6 6.2 54 52-113 2-69 (147)
419 cd02990 UAS_FAF1 UAS family, F 86.6 10 0.00022 30.0 9.5 91 45-135 18-133 (136)
420 COG1225 Bcp Peroxiredoxin [Pos 86.0 3.2 7E-05 33.7 6.5 56 46-101 28-88 (157)
421 cd03074 PDI_b'_Calsequestrin_C 84.5 15 0.00032 27.5 9.5 103 163-265 4-119 (120)
422 COG3019 Predicted metal-bindin 84.5 6.8 0.00015 30.8 7.3 73 50-133 26-102 (149)
423 TIGR02654 circ_KaiB circadian 84.0 4.3 9.2E-05 29.2 5.6 76 49-125 3-79 (87)
424 PRK09301 circadian clock prote 83.8 4.1 9E-05 30.2 5.7 78 47-125 4-82 (103)
425 COG4545 Glutaredoxin-related p 83.8 1.2 2.6E-05 30.6 2.6 55 53-114 5-75 (85)
426 PRK10954 periplasmic protein d 82.8 2 4.2E-05 37.0 4.4 40 179-218 38-80 (207)
427 cd02978 KaiB_like KaiB-like fa 82.1 7.9 0.00017 26.8 6.2 58 181-238 3-61 (72)
428 cd03031 GRX_GRX_like Glutaredo 80.7 6 0.00013 31.9 6.1 51 182-238 2-66 (147)
429 PHA03075 glutaredoxin-like pro 79.2 3.9 8.4E-05 30.9 4.1 36 49-88 2-37 (123)
430 TIGR02742 TrbC_Ftype type-F co 77.7 11 0.00024 29.6 6.6 44 221-264 60-113 (130)
431 TIGR01617 arsC_related transcr 77.3 4.8 0.0001 31.0 4.5 34 53-92 2-35 (117)
432 cd03070 PDI_b_ERp44 PDIb famil 77.1 24 0.00051 25.8 7.7 70 176-254 15-85 (91)
433 cd03041 GST_N_2GST_N GST_N fam 76.6 13 0.00029 25.8 6.4 70 52-133 2-75 (77)
434 COG3634 AhpF Alkyl hydroperoxi 76.1 68 0.0015 29.9 14.7 176 48-262 18-194 (520)
435 cd03013 PRX5_like Peroxiredoxi 75.7 9.6 0.00021 31.0 6.1 52 179-230 31-88 (155)
436 TIGR02654 circ_KaiB circadian 74.4 14 0.00031 26.6 5.8 73 180-254 4-77 (87)
437 cd03036 ArsC_like Arsenate Red 74.3 4.8 0.0001 30.6 3.8 34 52-91 1-34 (111)
438 cd02977 ArsC_family Arsenate R 74.0 3.1 6.8E-05 31.2 2.7 33 52-90 1-33 (105)
439 PHA03075 glutaredoxin-like pro 73.9 3.6 7.8E-05 31.1 2.8 30 179-208 2-31 (123)
440 cd03040 GST_N_mPGES2 GST_N fam 73.7 27 0.00057 24.1 7.4 75 52-135 2-76 (77)
441 cd03060 GST_N_Omega_like GST_N 73.3 20 0.00043 24.4 6.5 51 53-107 2-53 (71)
442 PRK09301 circadian clock prote 72.5 16 0.00034 27.3 5.8 74 179-254 6-80 (103)
443 PF13417 GST_N_3: Glutathione 72.4 20 0.00043 24.7 6.4 68 54-134 1-70 (75)
444 TIGR02742 TrbC_Ftype type-F co 72.3 4.7 0.0001 31.6 3.3 43 90-132 59-112 (130)
445 PF09673 TrbC_Ftype: Type-F co 72.2 17 0.00036 27.8 6.3 45 195-241 36-80 (113)
446 cd03051 GST_N_GTT2_like GST_N 70.9 5.8 0.00013 27.0 3.3 52 53-108 2-57 (74)
447 cd03035 ArsC_Yffb Arsenate Red 70.8 4.2 9.1E-05 30.6 2.7 34 52-91 1-34 (105)
448 KOG2792 Putative cytochrome C 66.7 64 0.0014 28.5 9.1 91 178-268 139-277 (280)
449 COG1225 Bcp Peroxiredoxin [Pos 66.6 25 0.00053 28.7 6.4 43 178-220 30-74 (157)
450 PRK01655 spxA transcriptional 66.2 7 0.00015 30.8 3.2 35 52-92 2-36 (131)
451 cd00570 GST_N_family Glutathio 65.2 21 0.00046 23.4 5.2 52 53-108 2-55 (71)
452 PF03032 Brevenin: Brevenin/es 64.9 3.9 8.5E-05 25.4 1.2 16 1-16 3-18 (46)
453 PF07689 KaiB: KaiB domain; I 63.9 4 8.6E-05 29.1 1.2 53 55-107 3-56 (82)
454 COG3531 Predicted protein-disu 63.0 11 0.00025 31.5 3.8 44 92-135 164-209 (212)
455 cd03070 PDI_b_ERp44 PDIb famil 62.5 41 0.0009 24.5 6.3 73 276-356 2-84 (91)
456 cd03060 GST_N_Omega_like GST_N 62.0 46 0.001 22.5 6.5 52 183-238 2-54 (71)
457 PF07689 KaiB: KaiB domain; I 61.1 7.1 0.00015 27.9 2.1 53 185-237 3-56 (82)
458 PF06053 DUF929: Domain of unk 61.1 29 0.00063 30.6 6.3 78 161-250 45-123 (249)
459 PRK12559 transcriptional regul 60.9 10 0.00022 29.9 3.2 34 52-91 2-35 (131)
460 COG1331 Highly conserved prote 60.7 21 0.00045 36.1 5.9 109 158-267 24-151 (667)
461 cd03037 GST_N_GRX2 GST_N famil 60.7 30 0.00065 23.4 5.3 51 53-107 2-52 (71)
462 cd00570 GST_N_family Glutathio 60.2 33 0.00071 22.4 5.5 51 184-238 3-55 (71)
463 PF09673 TrbC_Ftype: Type-F co 59.5 22 0.00048 27.1 4.8 45 65-111 36-80 (113)
464 PF08139 LPAM_1: Prokaryotic m 58.2 6.9 0.00015 20.8 1.2 12 1-12 7-18 (25)
465 cd02977 ArsC_family Arsenate R 58.1 9.4 0.0002 28.6 2.5 21 183-203 2-22 (105)
466 cd03045 GST_N_Delta_Epsilon GS 58.0 9.8 0.00021 26.0 2.5 51 53-107 2-56 (74)
467 cd03032 ArsC_Spx Arsenate Redu 57.9 12 0.00027 28.5 3.2 34 52-91 2-35 (115)
468 TIGR01617 arsC_related transcr 56.1 21 0.00045 27.4 4.2 33 183-221 2-34 (117)
469 KOG2507 Ubiquitin regulatory p 56.0 64 0.0014 30.6 7.7 90 46-135 16-111 (506)
470 PF00255 GSHPx: Glutathione pe 55.6 42 0.00091 25.4 5.6 55 33-89 7-62 (108)
471 COG1999 Uncharacterized protei 53.6 71 0.0015 27.4 7.4 54 177-230 66-127 (207)
472 COG4545 Glutaredoxin-related p 52.9 16 0.00035 25.3 2.6 22 183-204 5-26 (85)
473 COG2761 FrnE Predicted dithiol 52.8 20 0.00044 31.0 3.9 40 93-136 175-214 (225)
474 cd03059 GST_N_SspA GST_N famil 52.7 17 0.00037 24.7 3.0 69 53-133 2-71 (73)
475 PF09822 ABC_transp_aux: ABC-t 51.6 1.8E+02 0.0039 26.0 11.5 74 30-104 7-90 (271)
476 cd03055 GST_N_Omega GST_N fami 51.5 76 0.0016 22.7 6.4 54 51-108 18-72 (89)
477 PRK13344 spxA transcriptional 51.4 18 0.00038 28.6 3.1 34 52-91 2-35 (132)
478 COG0386 BtuE Glutathione perox 51.4 1.3E+02 0.0028 24.4 8.9 57 31-89 9-66 (162)
479 KOG2507 Ubiquitin regulatory p 49.8 1.3E+02 0.0028 28.7 8.6 91 177-267 17-112 (506)
480 PF13778 DUF4174: Domain of un 49.5 1.2E+02 0.0026 23.3 8.1 86 47-133 9-110 (118)
481 COG3019 Predicted metal-bindin 48.4 50 0.0011 26.1 5.0 75 179-265 25-103 (149)
482 PF04592 SelP_N: Selenoprotein 48.3 61 0.0013 28.2 6.0 58 30-89 10-71 (238)
483 PF04134 DUF393: Protein of un 47.1 27 0.00059 26.4 3.6 64 184-251 1-66 (114)
484 cd03035 ArsC_Yffb Arsenate Red 47.0 19 0.0004 27.1 2.5 20 183-202 2-21 (105)
485 cd03033 ArsC_15kD Arsenate Red 46.8 25 0.00054 26.9 3.2 33 52-90 2-34 (113)
486 cd03036 ArsC_like Arsenate Red 46.7 19 0.00041 27.4 2.6 31 183-219 2-32 (111)
487 PF06053 DUF929: Domain of unk 45.1 49 0.0011 29.2 5.1 60 45-111 55-114 (249)
488 PRK01655 spxA transcriptional 44.6 25 0.00054 27.7 3.0 21 182-202 2-22 (131)
489 PF02630 SCO1-SenC: SCO1/SenC; 44.6 53 0.0011 27.2 5.2 41 177-217 51-95 (174)
490 PF05361 PP1_inhibitor: PKC-ac 44.5 15 0.00032 29.1 1.6 42 350-410 38-81 (144)
491 COG2761 FrnE Predicted dithiol 44.2 51 0.0011 28.6 5.0 44 222-270 174-217 (225)
492 PRK13730 conjugal transfer pil 43.8 44 0.00095 28.4 4.4 41 221-263 151-191 (212)
493 cd03025 DsbA_FrnE_like DsbA fa 42.5 36 0.00078 28.5 4.0 28 52-79 3-30 (193)
494 PRK09810 entericidin A; Provis 41.3 27 0.00058 21.2 2.0 13 1-13 2-14 (41)
495 PF02402 Lysis_col: Lysis prot 40.9 12 0.00027 22.7 0.6 13 1-13 1-13 (46)
496 COG5510 Predicted small secret 40.3 32 0.00069 21.0 2.2 9 1-9 2-10 (44)
497 TIGR02743 TraW type-F conjugat 40.3 32 0.00068 29.4 3.1 34 200-238 158-191 (202)
498 cd03056 GST_N_4 GST_N family, 38.1 31 0.00067 23.3 2.4 52 53-108 2-57 (73)
499 PF04134 DUF393: Protein of un 37.5 56 0.0012 24.6 4.0 57 55-113 2-61 (114)
500 PRK12559 transcriptional regul 37.4 38 0.00083 26.6 3.0 21 182-202 2-22 (131)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-35 Score=270.63 Aligned_cols=313 Identities=31% Similarity=0.481 Sum_probs=258.8
Q ss_pred CCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcc
Q 015217 27 GSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGF 103 (411)
Q Consensus 27 ~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~ 103 (411)
.....+.+|+.++|+ ..+..+..++|.||||||+||+++.|++++++..+.. .+.+++|||+++..+|.+|+|+||
T Consensus 22 ~~~~~Vl~Lt~dnf~-~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gy 100 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFK-ETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGY 100 (493)
T ss_pred CcccceEEEecccHH-HHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCC
Confidence 567889999999999 7788899999999999999999999999999999986 589999999999999999999999
Q ss_pred cEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEE
Q 015217 104 PTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIV 183 (411)
Q Consensus 104 P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv 183 (411)
||+.+|++|+....|.|+++.+.|+.|+.+. ..+.+..+......+.+......++|
T Consensus 101 PTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq-----------------------~gPa~~~l~~~~~a~~~l~~~~~~vi 157 (493)
T KOG0190|consen 101 PTLKIFRNGRSAQDYNGPREADGIVKWLKKQ-----------------------SGPASKTLKTVDEAEEFLSKKDVVVI 157 (493)
T ss_pred CeEEEEecCCcceeccCcccHHHHHHHHHhc-----------------------cCCCceecccHHHHHhhccCCceEEE
Confidence 9999999998779999999999999999976 46778888766655555666667777
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccc--ccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG--FPTILVFGADKDSPIPYEGARTAGAIESF 261 (411)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~--~P~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (411)
.|+.+.- .....+..+|..+.+.+.|+. +++.+++++++... .|.+++++...+....|.|.++.+.|.+|
T Consensus 158 g~F~d~~----~~~~~~~~~a~~l~~d~~F~~---ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~F 230 (493)
T KOG0190|consen 158 GFFKDLE----SLAESFFDAASKLRDDYKFAH---TSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKF 230 (493)
T ss_pred EEecccc----cchHHHHHHHHhccccceeec---cCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHH
Confidence 7776542 223677888888888899994 66888999988763 45588888777777888899999999999
Q ss_pred HHHHhhhcCCCCCceEeCChhHHHHhcCC---ccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHH
Q 015217 262 ALEQLETNVAPPEVTELTSQDVMEEKCGS---AAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENR 328 (411)
Q Consensus 262 i~~~~~~~~~~~~v~~l~~~~~~~~~~~~---~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~ 328 (411)
|..+.. |.+.+++.......+.+. +.+++ +.+.+..+|++|++. +.|+.+|..+....+..
T Consensus 231 i~~~~~-----plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~-l~Fi~~d~e~~~~~~~~ 304 (493)
T KOG0190|consen 231 IQENSL-----PLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGK-LRFILIDPESFARVLEF 304 (493)
T ss_pred HHHhcc-----cccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccc-eEEEEEChHHhhHHHHh
Confidence 988854 888888886654444331 22222 558999999999997 99999988888889999
Q ss_pred hCCCCCCCC-eEEEeecCCCccccCCCCCChhHHHHHHHHHccCCCCCC
Q 015217 329 VGVGGYGYP-ALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNL 376 (411)
Q Consensus 329 f~~~~~~~P-~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~ 376 (411)
||+.....| .+++.+....+|.+-.+..+.++|+.|+.++++|+.+..
T Consensus 305 ~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~ 353 (493)
T KOG0190|consen 305 FGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPH 353 (493)
T ss_pred cCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccc
Confidence 999977777 555666666788655566999999999999999987655
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=8.8e-32 Score=263.57 Aligned_cols=298 Identities=28% Similarity=0.474 Sum_probs=235.1
Q ss_pred CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEeccccHhHHHhcCCCccc
Q 015217 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK---GVATVAALDANEHQSLAQEYGIRGFP 104 (411)
Q Consensus 28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~P 104 (411)
....+..++.++|+ .++.+++.++|.||++||++|+++.|.|.+++..+. +++.++.|||+++.++|++|+|.++|
T Consensus 30 ~~~~v~~l~~~~f~-~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 30 ISEHVTVLTDSTFD-KFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred cCCCcEEcchhhHH-HHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence 34678999999999 566778899999999999999999999999998775 36999999999999999999999999
Q ss_pred EEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEE
Q 015217 105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVE 184 (411)
Q Consensus 105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~ 184 (411)
++++|++|+.. +|.|.++.+.+.+|+.+.+ .+.+..++...-.........+.++.
T Consensus 109 t~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~-----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~ 164 (477)
T PTZ00102 109 TIKFFNKGNPV-NYSGGRTADGIVSWIKKLT-----------------------GPAVTEVESASEIKLIAKKIFVAFYG 164 (477)
T ss_pred EEEEEECCceE-EecCCCCHHHHHHHHHHhh-----------------------CCCceeecCHHHHHHhhccCcEEEEE
Confidence 99999998765 9999999999999999874 46677777655444333444556665
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217 185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (411)
++.... ......|.++|..++....|+.+.-. ..|.+.+|+.... ...+.+..+.++|.+||..
T Consensus 165 ~~~~~~---~~~~~~f~~~a~~~~~~~~F~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~~l~~fI~~ 228 (477)
T PTZ00102 165 EYTSKD---SELYKKFEEVADKHREHAKFFVKKHE------------GKNKIYVLHKDEE-GVELFMGKTKEELEEFVST 228 (477)
T ss_pred EeccCC---cHHHHHHHHHHHhccccceEEEEcCC------------CCCcEEEEecCCC-CcccCCCCCHHHHHHHHHH
Confidence 555432 57888999999999988878764311 2366788876544 4444445688999999988
Q ss_pred HhhhcCCCCCceEeCChhHHHHhcCCccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchh-hHHHhCCCC
Q 015217 265 QLETNVAPPEVTELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPD-LENRVGVGG 333 (411)
Q Consensus 265 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~-~~~~f~~~~ 333 (411)
+. .|.+.+++..+.......+..+++ +.+.++.+|++|+++ +.|+++|....+. +++.||+..
T Consensus 229 ~~-----~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~~~~~~~~~~gi~~ 302 (477)
T PTZ00102 229 ES-----FPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVVRKVARKLREK-YAFVWLDTEQFGSHAKEHLLIEE 302 (477)
T ss_pred cC-----CCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHHHHHHHhccCc-eEEEEEechhcchhHHHhcCccc
Confidence 74 599999999877666655555333 346899999999988 9999999988776 888999986
Q ss_pred CCCCeEEEeecCCCccccCCCC----CChhHHHHHHHHHccCCCCCC
Q 015217 334 YGYPALVALNVKKGVYTPLKSA----FELEHIVEFVKEAGRGGKGNL 376 (411)
Q Consensus 334 ~~~P~l~v~~~~~~~~~~~~~~----~~~~~i~~fi~~~~~g~~~~~ 376 (411)
+|++++.+. .++|. +.+. .+.+.|.+|+++++.|+....
T Consensus 303 --~P~~~i~~~-~~~y~-~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~ 345 (477)
T PTZ00102 303 --FPGLAYQSP-AGRYL-LPPAKESFDSVEALIEFFKDVEAGKVEKS 345 (477)
T ss_pred --CceEEEEcC-CcccC-CCccccccCCHHHHHHHHHHHhCCCCCcc
Confidence 999888863 44663 4432 789999999999999976654
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.8e-30 Score=253.76 Aligned_cols=309 Identities=27% Similarity=0.470 Sum_probs=243.4
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
.+..++.++|+ .+..++++++|.||++||++|+++.|.|.++++.+.+ ++.++.|||++++++|++++|.++|+++
T Consensus 2 ~v~~l~~~~~~-~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFD-DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHH-HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 46789999999 5667888999999999999999999999999998864 4999999999999999999999999999
Q ss_pred EEeCCCC-CcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeC-ccchHHHHhcCCCeEEEEE
Q 015217 108 VFVPGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELN-SSNFDELVLKSKDLWIVEF 185 (411)
Q Consensus 108 ~~~~g~~-~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~~~~~~~~~~~lv~f 185 (411)
+|.+|+. ..+|.|.++.+.+.+|+.+.+ .+.+..++ .+++..++ ..+.+.+|.|
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~-----------------------~~~~~~i~~~~~~~~~~-~~~~~~vi~~ 136 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQS-----------------------GPAVKEIETVADLEAFL-ADDDVVVIGF 136 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhc-----------------------CCCceeecCHHHHHHHH-hcCCcEEEEE
Confidence 9999886 789999999999999998774 45667776 46666654 4466777777
Q ss_pred eCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCc--ccccCCC--CHHHHHHH
Q 015217 186 FAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP--IPYEGAR--TAGAIESF 261 (411)
Q Consensus 186 ~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~--~~y~g~~--~~~~i~~f 261 (411)
+...- ......|.++|..+...+.+... ..+..+.+.++... |.+++|+...... ..|.|.. +.+.|.+|
T Consensus 137 ~~~~~---~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f 210 (462)
T TIGR01130 137 FKDLD---SELNDTFLSVAEKLRDVYFFFAH--SSDVAAFAKLGAFP-DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKF 210 (462)
T ss_pred ECCCC---cHHHHHHHHHHHHhhhccceEEe--cCCHHHHhhcCCCC-CcEEEecccccccccccccCcccCCHHHHHHH
Confidence 76421 57788999999999887664322 23456778887654 6777775443222 4677765 55899999
Q ss_pred HHHHhhhcCCCCCceEeCChhHHHHhcCCcc-EEE------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHH
Q 015217 262 ALEQLETNVAPPEVTELTSQDVMEEKCGSAA-ICF------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENR 328 (411)
Q Consensus 262 i~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~-~~~------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~ 328 (411)
+..+. .|.+.+++..+.......... +++ +.+.++.+|++|++..+.|+++|+...+.++..
T Consensus 211 i~~~~-----~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~ 285 (462)
T TIGR01130 211 IRAES-----LPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEY 285 (462)
T ss_pred HHHcC-----CCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHH
Confidence 98875 488999988665444443321 111 246899999999973399999999888999999
Q ss_pred hCCCCCCCCeEEEeecCC-CccccCCC-CCChhHHHHHHHHHccCCCCCC
Q 015217 329 VGVGGYGYPALVALNVKK-GVYTPLKS-AFELEHIVEFVKEAGRGGKGNL 376 (411)
Q Consensus 329 f~~~~~~~P~l~v~~~~~-~~~~~~~~-~~~~~~i~~fi~~~~~g~~~~~ 376 (411)
||+....+|.+++++.++ .+| .+.+ .++.++|.+||++++.|+.+..
T Consensus 286 ~~~~~~~~P~~vi~~~~~~~~y-~~~~~~~~~~~i~~fi~~~~~g~~~~~ 334 (462)
T TIGR01130 286 FGLKAEKFPAVAIQDLEGNKKY-PMDQEEFSSENLEAFVKDFLDGKLKPY 334 (462)
T ss_pred cCCCccCCceEEEEeCCccccc-CCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence 999877799999999776 556 4444 7999999999999999988754
No 4
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.97 E-value=3.9e-29 Score=212.10 Aligned_cols=294 Identities=22% Similarity=0.383 Sum_probs=211.2
Q ss_pred CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccE
Q 015217 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPT 105 (411)
Q Consensus 29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~ 105 (411)
+..+.+|+++-.+ .+.+..|+|.||+|||.||++++|.|.++...+++ .|.++++||++-+.++.++||+|||+
T Consensus 27 pt~VeDLddkFkd---nkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 27 PTAVEDLDDKFKD---NKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPT 103 (468)
T ss_pred chhhhhhhHHhhh---cccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCce
Confidence 3456677653222 24577999999999999999999999999998885 48999999999999999999999999
Q ss_pred EEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHH-HHhcCCCeEEEE
Q 015217 106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDE-LVLKSKDLWIVE 184 (411)
Q Consensus 106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~~~~~~~~~lv~ 184 (411)
+.+|+++ ..+.|.|+++.++|+.|..+. +.+.+..+++++... .+...+.+.+|+
T Consensus 104 Ik~~kgd-~a~dYRG~R~Kd~iieFAhR~-----------------------a~aiI~pi~enQ~~fehlq~Rhq~ffVf 159 (468)
T KOG4277|consen 104 IKFFKGD-HAIDYRGGREKDAIIEFAHRC-----------------------AAAIIEPINENQIEFEHLQARHQPFFVF 159 (468)
T ss_pred EEEecCC-eeeecCCCccHHHHHHHHHhc-----------------------ccceeeecChhHHHHHHHhhccCceEEE
Confidence 9999976 479999999999999999875 234455555533322 246667899999
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC-ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217 185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF-NVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263 (411)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~-~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~ 263 (411)
|.+... .+...|.++|.. ++.+++.-..+ .+++-.+ ..+..|++.+|+++. ...| ...+.+++.+||.
T Consensus 160 ~Gtge~----PL~d~fidAASe---~~~~a~FfSas-eeVaPe~~~~kempaV~VFKDet--f~i~-de~dd~dLseWin 228 (468)
T KOG4277|consen 160 FGTGEG----PLFDAFIDAASE---KFSVARFFSAS-EEVAPEENDAKEMPAVAVFKDET--FEIE-DEGDDEDLSEWIN 228 (468)
T ss_pred EeCCCC----cHHHHHHHHhhh---heeeeeeeccc-cccCCcccchhhccceEEEccce--eEEE-ecCchhHHHHHHh
Confidence 986542 356666666654 34444433222 2333333 345679999998764 2222 2346789999997
Q ss_pred HHhhhcCCCCCceEeCChhHHHHhcCCccEEE-----------------eHHHHHHHHHHhhcC-----ccEEEEecCCC
Q 015217 264 EQLETNVAPPEVTELTSQDVMEEKCGSAAICF-----------------YLEMLLSVAEKFKRG-----HYSFVWAAAGK 321 (411)
Q Consensus 264 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~-----~~~f~~i~~~~ 321 (411)
+.- .|.+...+.....+...+++.+.. +.++.+.+|+.+|+. .|.|+|+|+
T Consensus 229 RER-----f~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDG-- 301 (468)
T KOG4277|consen 229 RER-----FPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDG-- 301 (468)
T ss_pred Hhh-----ccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccch--
Confidence 653 255544444332222222332222 557889999999875 499999999
Q ss_pred chhhHHHhCCCCCCCCeEEEeecCCCccccCCC---CCChhHHHHHHHHH
Q 015217 322 QPDLENRVGVGGYGYPALVALNVKKGVYTPLKS---AFELEHIVEFVKEA 368 (411)
Q Consensus 322 ~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~---~~~~~~i~~fi~~~ 368 (411)
.++++++.+.....|.++|+|..+..|...+. -.+.+++.+||+.-
T Consensus 302 -nD~~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFient 350 (468)
T KOG4277|consen 302 -NDLANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENT 350 (468)
T ss_pred -hHHHHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhcc
Confidence 88888888877779999999988888855432 27889999999983
No 5
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-29 Score=235.41 Aligned_cols=241 Identities=45% Similarity=0.863 Sum_probs=203.9
Q ss_pred ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCccc
Q 015217 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFP 104 (411)
Q Consensus 25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P 104 (411)
..........++...|.......+++++|+||+|||++|+++.|.|.+++..+++.+.++.|||+.+..+|++|+|+++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 24 LYLASGVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFP 103 (383)
T ss_pred hhccccchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCc
Confidence 33444444455556666577788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-CcEEeCccchHHHHhcCCCeEEE
Q 015217 105 TIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSN-ESIELNSSNFDELVLKSKDLWIV 183 (411)
Q Consensus 105 ~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~~~~~~~lv 183 (411)
++.+|.+|.....|.|..+.+.+.+|....+...... ... .+..++..++.......+..++|
T Consensus 104 tl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~l~~~~~~~~~~~~~~~~lv 167 (383)
T KOG0191|consen 104 TLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKK----------------LVEGEVFELTKDNFDETVKDSDADWLV 167 (383)
T ss_pred EEEEEcCCCceeeccCcccHHHHHHHHHHhhcccccc----------------ccCCceEEccccchhhhhhccCcceEE
Confidence 9999999856899999999999999998877544333 233 48999999999988888889999
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217 184 EFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261 (411)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (411)
.||+|||++|+.+.+.|.+++..+. ..+.++.++|+....++.++++..+|++.+|..+.+....|.|.++.+.+..|
T Consensus 168 ~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~ 247 (383)
T KOG0191|consen 168 EFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSF 247 (383)
T ss_pred EEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHH
Confidence 9999999999999999999999996 46999999999889999999999999999998776535667788999999999
Q ss_pred HHHHhhhcCCCCCceEeCCh
Q 015217 262 ALEQLETNVAPPEVTELTSQ 281 (411)
Q Consensus 262 i~~~~~~~~~~~~v~~l~~~ 281 (411)
+..........+.+.+....
T Consensus 248 v~~~~~~~~~~~~~~~~~~~ 267 (383)
T KOG0191|consen 248 VEKKERRNIPEPELKEIEDK 267 (383)
T ss_pred HHhhcCCCCCCcccccccCc
Confidence 99887654333444444443
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.96 E-value=4.5e-26 Score=198.23 Aligned_cols=313 Identities=21% Similarity=0.341 Sum_probs=221.8
Q ss_pred ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhh-----H-HHHHHHHHhCC-CeEEEEEeccccHhHHHh
Q 015217 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALT-----P-IWEKAATVLKG-VATVAALDANEHQSLAQE 97 (411)
Q Consensus 25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~-----~-~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~ 97 (411)
.+.+..++++|+.+||+ .++++....+|+||.|--..-.... . .++-+|+.+.. .|.||.||..++..++++
T Consensus 29 ~YDGkDRVi~LneKNfk-~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKK 107 (383)
T PF01216_consen 29 EYDGKDRVIDLNEKNFK-RALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKK 107 (383)
T ss_dssp S-SSS--CEEE-TTTHH-HHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHH
T ss_pred cCCCccceEEcchhHHH-HHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHh
Confidence 56788999999999999 6888899999999998743322211 1 44556666654 699999999999999999
Q ss_pred cCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhc-
Q 015217 98 YGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK- 176 (411)
Q Consensus 98 ~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~- 176 (411)
+|+...+++.+|.+|. ++.|.|.++++.++.|+...+ ..+|..++.+.-.+.+.+
T Consensus 108 Lgv~E~~SiyVfkd~~-~IEydG~~saDtLVeFl~dl~-----------------------edPVeiIn~~~e~~~Fe~i 163 (383)
T PF01216_consen 108 LGVEEEGSIYVFKDGE-VIEYDGERSADTLVEFLLDLL-----------------------EDPVEIINNKHELKAFERI 163 (383)
T ss_dssp HT--STTEEEEEETTE-EEEE-S--SHHHHHHHHHHHH-----------------------SSSEEEE-SHHHHHHHHH-
T ss_pred cCccccCcEEEEECCc-EEEecCccCHHHHHHHHHHhc-----------------------ccchhhhcChhhhhhhhhc
Confidence 9999999999999986 699999999999999999987 466888887655544434
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCH
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTA 255 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~ 255 (411)
...+.+|.|+.+.- ......|.++|..|++.+.|+.+- ++.+++++++. .-.+-+|++-.+.++...|. .+.
T Consensus 164 ed~~klIGyFk~~~---s~~yk~FeeAAe~F~p~IkFfAtf---d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e 236 (383)
T PF01216_consen 164 EDDIKLIGYFKSED---SEHYKEFEEAAEHFQPYIKFFATF---DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTE 236 (383)
T ss_dssp -SS-EEEEE-SSTT---SHHHHHHHHHHHHCTTTSEEEEE----SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--H
T ss_pred ccceeEEEEeCCCC---cHHHHHHHHHHHhhcCceeEEEEe---cchhhhhcCcc-ccceeeeccccCCCccCCCCCCCH
Confidence 34688888887642 347889999999999999999854 89999999997 78899998877778888874 678
Q ss_pred HHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC----CccEEE----------eHHHHHHHHHHhhcC-ccEEEEecCC
Q 015217 256 GAIESFALEQLETNVAPPEVTELTSQDVMEEKCG----SAAICF----------YLEMLLSVAEKFKRG-HYSFVWAAAG 320 (411)
Q Consensus 256 ~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~----~~~~~~----------~~~~~~~~a~~~~~~-~~~f~~i~~~ 320 (411)
+++++||.+|- .|.+++++.+++++.-.. .+.+.| ++++++++|..+.+. .+.++|||++
T Consensus 237 ~e~~~fi~~h~-----rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD 311 (383)
T PF01216_consen 237 EELVEFIEEHK-----RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPD 311 (383)
T ss_dssp HHHHHHHHHT------S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GG
T ss_pred HHHHHHHHHhc-----hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCC
Confidence 89999999985 499999999998775322 233444 779999999999987 4999999998
Q ss_pred Cch----hhHHHhCCCCCCCCeEEEeecCCCc--cccCCC---CCChhHHHHHHHHHccCCCCC
Q 015217 321 KQP----DLENRVGVGGYGYPALVALNVKKGV--YTPLKS---AFELEHIVEFVKEAGRGGKGN 375 (411)
Q Consensus 321 ~~~----~~~~~f~~~~~~~P~l~v~~~~~~~--~~~~~~---~~~~~~i~~fi~~~~~g~~~~ 375 (411)
+.| -|.+.||++- .-|.+.+++.+... |...++ .-|.+.++.||+++++|++.+
T Consensus 312 ~fPllv~yWE~tF~Idl-~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 312 DFPLLVPYWEKTFGIDL-SRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp G-HHHHHHHHHHHTT-T-TS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred CCchhHHHHHhhcCccc-cCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 876 4788999986 46999999977643 433322 258999999999999996654
No 7
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.94 E-value=2.7e-25 Score=192.93 Aligned_cols=191 Identities=20% Similarity=0.291 Sum_probs=153.3
Q ss_pred CCCeEEEEEEC---CCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC-cccCCC
Q 015217 47 ANGVVLVEFYA---PWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP-VDYQGA 121 (411)
Q Consensus 47 ~~~~~~v~f~~---~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~-~~~~g~ 121 (411)
++...++.|++ +||++|+.+.|.++++++.+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45566777888 9999999999999999998854 356777777799999999999999999999999875 589999
Q ss_pred CCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCC-CeEEEEEeCCCChhhhhhhHHH
Q 015217 122 RDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSK-DLWIVEFFAPWCGHCKKLAPEW 200 (411)
Q Consensus 122 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~ 200 (411)
.+.+.+.+|+...+.. ......++...... +.... ...++.|+++||++|+.+.+.+
T Consensus 98 ~~~~~l~~~i~~~~~~---------------------~~~~~~L~~~~~~~-l~~~~~pv~I~~F~a~~C~~C~~~~~~l 155 (215)
T TIGR02187 98 PAGYEFAALIEDIVRV---------------------SQGEPGLSEKTVEL-LQSLDEPVRIEVFVTPTCPYCPYAVLMA 155 (215)
T ss_pred CCHHHHHHHHHHHHHh---------------------cCCCCCCCHHHHHH-HHhcCCCcEEEEEECCCCCCcHHHHHHH
Confidence 9999999998866421 01123444433433 33333 4566669999999999999999
Q ss_pred HHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217 201 KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 201 ~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (411)
.+++... +.+.+..+|.+.+++++++|+|.++|++++++++. .+.|....+++.+|+.+
T Consensus 156 ~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 156 HKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 9999884 57999999999999999999999999999986543 28898888999999865
No 8
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.93 E-value=1.8e-23 Score=178.24 Aligned_cols=298 Identities=23% Similarity=0.349 Sum_probs=215.5
Q ss_pred CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-----CCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-----GVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (411)
Q Consensus 36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 110 (411)
+.+|++ .++..+..++|.|||+||+..+.++|.+++++..++ +++.++.|||+++..++.+|.|..|||+.+|.
T Consensus 2 t~~N~~-~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENID-SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHH-HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456777 777889999999999999999999999999888774 57999999999999999999999999999999
Q ss_pred CCCC-CcccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCcc-chHHHHhcCCCeEEEEEeCC
Q 015217 111 PGKP-PVDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSS-NFDELVLKSKDLWIVEFFAP 188 (411)
Q Consensus 111 ~g~~-~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~~~~~~~lv~f~~~ 188 (411)
+|.. ...|.|.++.+++.+|+.+.+... +.+..+. ++......+...++.+|-..
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~-----------------------i~Ef~sl~~l~n~~~p~K~~vIgyF~~k 137 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDP-----------------------INEFESLDQLQNLDIPSKRTVIGYFPSK 137 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccH-----------------------HHHHHhHHHHHhhhccccceEEEEeccC
Confidence 9976 448999999999999999987433 3333332 33332222445666666544
Q ss_pred CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-CcccccCCC-CHHHHHHHHHHHh
Q 015217 189 WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGAR-TAGAIESFALEQL 266 (411)
Q Consensus 189 ~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~-~~~~i~~fi~~~~ 266 (411)
. ..-...+.++|..+++.+.|..--.+ +.....-.+.+ +++|+++.. ....|.|.+ +.+.+..||.+..
T Consensus 138 d----spey~~~~kva~~lr~dc~f~V~~gD----~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKc 208 (375)
T KOG0912|consen 138 D----SPEYDNLRKVASLLRDDCVFLVGFGD----LLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKC 208 (375)
T ss_pred C----CchHHHHHHHHHHHhhccEEEeeccc----cccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcc
Confidence 3 23567888999999987666431111 11111112223 455555432 234699986 6789999998876
Q ss_pred hhcCCCCCceEeCChhHHHHhcCCccEEEeH---------HHHH-HHHHHhhcC--ccEEEEecCCCchhhHHHhCCCCC
Q 015217 267 ETNVAPPEVTELTSQDVMEEKCGSAAICFYL---------EMLL-SVAEKFKRG--HYSFVWAAAGKQPDLENRVGVGGY 334 (411)
Q Consensus 267 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~---------~~~~-~~a~~~~~~--~~~f~~i~~~~~~~~~~~f~~~~~ 334 (411)
. |.|.++|.++.-+--..+.++++++ +.|. .++++.-+. .++|+..|+.....-+.-+|-+..
T Consensus 209 v-----pLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~ 283 (375)
T KOG0912|consen 209 V-----PLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPD 283 (375)
T ss_pred h-----hhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcc
Confidence 4 9999999977666555666655421 3333 344455443 389999999888888999998888
Q ss_pred CCCeEEEeecCCCccccCC---CCCChhHHHHHHHHHccCCC
Q 015217 335 GYPALVALNVKKGVYTPLK---SAFELEHIVEFVKEAGRGGK 373 (411)
Q Consensus 335 ~~P~l~v~~~~~~~~~~~~---~~~~~~~i~~fi~~~~~g~~ 373 (411)
++|.|+|=. -+..| .+. .-..+..|.+|+.++-+|+.
T Consensus 284 DLPviaIDs-F~Hmy-lfp~f~di~~pGkLkqFv~DL~sgkl 323 (375)
T KOG0912|consen 284 DLPVIAIDS-FRHMY-LFPDFNDINIPGKLKQFVADLHSGKL 323 (375)
T ss_pred cCcEEEeec-cceee-ecCchhhhcCccHHHHHHHHHhCchh
Confidence 999988753 33444 232 33677899999999999987
No 9
>PTZ00102 disulphide isomerase; Provisional
Probab=99.90 E-value=7.2e-22 Score=193.59 Aligned_cols=225 Identities=22% Similarity=0.412 Sum_probs=179.7
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh-HHHhcCCCcccEEEEEe
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS-LAQEYGIRGFPTIKVFV 110 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~-~~~~~~i~~~P~~~~~~ 110 (411)
+..++.+++. ....++.++++.++ .+.....+.+.+.++++.+++++.|+.+|+++.+. +++.+|+.++|++++..
T Consensus 234 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~ 310 (477)
T PTZ00102 234 FAEINAENYR-RYISSGKDLVWFCG--TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQS 310 (477)
T ss_pred eeecCccchH-HHhcCCccEEEEec--CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCcccCceEEEEc
Confidence 3466777776 45555555443333 56677788999999999999999999999998886 89999999999988776
Q ss_pred CCCCCcccCCC----CCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCCcEEeCccchHHHHhcCCCeEEEE
Q 015217 111 PGKPPVDYQGA----RDVKPIAEFALQQIKALLKERLSGKATGGSSDK--SKSDSNESIELNSSNFDELVLKSKDLWIVE 184 (411)
Q Consensus 111 ~g~~~~~~~g~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~ 184 (411)
.+.. ..+.+. .+.+.|.+|+.+.+ +++.....++. +......+..++..+|.+.+.+.+++++|.
T Consensus 311 ~~~~-y~~~~~~~~~~~~~~l~~Fv~~~~--------~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~ 381 (477)
T PTZ00102 311 PAGR-YLLPPAKESFDSVEALIEFFKDVE--------AGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLE 381 (477)
T ss_pred CCcc-cCCCccccccCCHHHHHHHHHHHh--------CCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEE
Confidence 4322 233333 56667777776654 44444444333 234467799999999999878888999999
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217 185 FFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
||++||++|+.+.|.|.++++.+++ .+.++.+|++.+...++.++++++|++++|++++..+..|.|..+.+.+.+|+
T Consensus 382 f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i 461 (477)
T PTZ00102 382 IYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFV 461 (477)
T ss_pred EECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHH
Confidence 9999999999999999999999875 59999999999999999999999999999998876667899999999999999
Q ss_pred HHHhhh
Q 015217 263 LEQLET 268 (411)
Q Consensus 263 ~~~~~~ 268 (411)
.++...
T Consensus 462 ~~~~~~ 467 (477)
T PTZ00102 462 NKHATN 467 (477)
T ss_pred HHcCCC
Confidence 998753
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=3.1e-22 Score=153.45 Aligned_cols=107 Identities=22% Similarity=0.415 Sum_probs=97.8
Q ss_pred ccCCCCCcEEeCccchhHH--HhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHH-HhcCCC
Q 015217 25 LYGSSSPVVQLTPNNFKSK--VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA-QEYGIR 101 (411)
Q Consensus 25 ~~~~~~~~~~l~~~~f~~~--~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~-~~~~i~ 101 (411)
.+++...+++|++++|++. +..++++++|.|||+||++|+.+.|.++++++.+++.+.|++|||+++..+| ++|+|.
T Consensus 4 ~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 4 FFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred ccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 4566788999999999954 2578999999999999999999999999999999988999999999999999 589999
Q ss_pred cccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217 102 GFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 102 ~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
++||+++|++|+...+|.|.++.+.|..|+
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999998889999999999998773
No 11
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.7e-21 Score=178.09 Aligned_cols=210 Identities=29% Similarity=0.539 Sum_probs=178.7
Q ss_pred CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCcccccc
Q 015217 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFP 234 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P 234 (411)
....|..|+..+|.+. +..+..++|.||+|||++|+.+.|.|.++|..+.. .+..+.|||+.+..+|.+|+|+++|
T Consensus 23 ~~~~Vl~Lt~dnf~~~-i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKET-INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHH-hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4678999999999996 67788999999999999999999999999999987 4999999999999999999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE---------eHHHHHHHHH
Q 015217 235 TILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF---------YLEMLLSVAE 305 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~a~ 305 (411)
|+.+|++|.. +..|+|+++.+.|+.|+.+..+ |....+.+.+..+.+.....+.+ ..+.+...|.
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~g-----Pa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~ 175 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSG-----PASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAAS 175 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHHhccC-----CCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHH
Confidence 9999998875 7999999999999999999876 88999999888888777755333 2257778888
Q ss_pred HhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHccCCCCCCCC
Q 015217 306 KFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPL 378 (411)
Q Consensus 306 ~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~~~ 378 (411)
..++. +.|+..+. .++++.+++.....|.+++++........|+++++.+.|.+||....-+-....+.
T Consensus 176 ~l~~d-~~F~~ts~---~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~ 244 (493)
T KOG0190|consen 176 KLRDD-YKFAHTSD---SDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTV 244 (493)
T ss_pred hcccc-ceeeccCc---HhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecc
Confidence 88888 99985554 88999999874446678888877788888899999999999999876554444333
No 12
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.86 E-value=6.5e-20 Score=179.31 Aligned_cols=224 Identities=26% Similarity=0.476 Sum_probs=177.1
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCC--cccEE
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFY--APWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIR--GFPTI 106 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~--~~P~~ 106 (411)
+..++..++. .....+ +.++.|+ ......|+.+...+.++++.+++ .+.|+.+|+...+.+++.+|+. .+|++
T Consensus 219 v~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~ 296 (462)
T TIGR01130 219 VGEFTQETAA-KYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAV 296 (462)
T ss_pred eEeeCCcchh-hHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceE
Confidence 3455666665 343443 4444443 44566789999999999999997 8999999999999999999998 69999
Q ss_pred EEEeCCC-CCcccCC-CCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCCCcEEeCccchHHHHhcCCCeEE
Q 015217 107 KVFVPGK-PPVDYQG-ARDVKPIAEFALQQIKALLKERLSGKATGGSSDKS--KSDSNESIELNSSNFDELVLKSKDLWI 182 (411)
Q Consensus 107 ~~~~~g~-~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~~~~~~l 182 (411)
+++.... ....+.+ ..+.+.|.+|+.+.+ +|+......+.+ ......+..+...+|.+.+.+.++.++
T Consensus 297 vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~--------~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vl 368 (462)
T TIGR01130 297 AIQDLEGNKKYPMDQEEFSSENLEAFVKDFL--------DGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVL 368 (462)
T ss_pred EEEeCCcccccCCCcCCCCHHHHHHHHHHHh--------cCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEE
Confidence 9987543 2344544 667777777777654 555555444443 224567899999999998878888999
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-CcccccCCCCHHHH
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGARTAGAI 258 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~~~~~i 258 (411)
|.||++||++|+.+.|.|.++++.+++ .+.|+.+||+.+. +.. +++.++|++++|+.+.. .+..|.|..+.++|
T Consensus 369 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l 446 (462)
T TIGR01130 369 VEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDF 446 (462)
T ss_pred EEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHH
Confidence 999999999999999999999999998 6999999998765 333 99999999999987765 46889999999999
Q ss_pred HHHHHHHhh
Q 015217 259 ESFALEQLE 267 (411)
Q Consensus 259 ~~fi~~~~~ 267 (411)
.+|+.++..
T Consensus 447 ~~~l~~~~~ 455 (462)
T TIGR01130 447 SKFIAKHAT 455 (462)
T ss_pred HHHHHhcCC
Confidence 999988763
No 13
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=7e-21 Score=163.27 Aligned_cols=136 Identities=32% Similarity=0.543 Sum_probs=106.7
Q ss_pred CchhhHHHHHHHHHHHhhhcccccccCCCCCcEEeCccchhHHHhc----CCCeEEEEEECCCChhhhhhhHHHHHHHHH
Q 015217 1 MRRSQLLVILTIFSFFARFNLSDALYGSSSPVVQLTPNNFKSKVLN----ANGVVLVEFYAPWCGHCQALTPIWEKAATV 76 (411)
Q Consensus 1 Mk~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~ 76 (411)
||++.+++++++.+++.......-.......+.++++++|++.+.. .+++|+|+||++||++|+.+.|.|+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~ 80 (224)
T PTZ00443 1 MKFIILACCILFGLIADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKA 80 (224)
T ss_pred CchhHHHHHHHHHHHccccccccccccCCCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHH
Confidence 7884444433333332222211111122567999999999965543 257999999999999999999999999999
Q ss_pred hCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217 77 LKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136 (411)
Q Consensus 77 ~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~ 136 (411)
+++.+.++.+||++++++|++|+|.++|++++|++|+....+.|.++.+.+.+|+.+...
T Consensus 81 ~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 81 LKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766566788999999999988764
No 14
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=6.5e-21 Score=145.29 Aligned_cols=99 Identities=29% Similarity=0.726 Sum_probs=91.7
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 110 (411)
.+.+++.++|++ ....+++++|.||++||++|+.+.|.++++++.+++.+.|+.|||++++.+|++++|.++|++++|+
T Consensus 2 ~~~~l~~~~f~~-~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDA-AVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHH-HhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 467899999995 5567799999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcchhHHH
Q 015217 111 PGKPPVDYQGARDVKPIAEF 130 (411)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~ 130 (411)
+|+...+|.|.++.+.|.+|
T Consensus 81 ~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCCcccCCCCCCHHHHHhh
Confidence 99888899999999988876
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=1.3e-20 Score=144.47 Aligned_cols=101 Identities=43% Similarity=0.736 Sum_probs=92.7
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 110 (411)
.+++++.++|++.+..++++++|.||++||++|+.+.|.|+++++.+.+.+.++.+||++++++|++++|.++|++++|.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 46789999999777777889999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-CCCcccCCCCC-cchhHHHH
Q 015217 111 PG-KPPVDYQGARD-VKPIAEFA 131 (411)
Q Consensus 111 ~g-~~~~~~~g~~~-~~~l~~~~ 131 (411)
+| +.+.+|.|..+ .++|.+|+
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 88 77889999987 88888774
No 16
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=9.9e-21 Score=147.19 Aligned_cols=105 Identities=30% Similarity=0.545 Sum_probs=99.6
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV 110 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 110 (411)
.+...+..+|++++++++.||+|.|||+||++|+.+.|.+++++..+.|.+.+++||.|++.+++.+|+|..+|++++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcchhHHHHHHHH
Q 015217 111 PGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
+|+...++.|..+.+.+.+++.+.+
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHh
Confidence 9998889999999999999998876
No 17
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=4.3e-20 Score=141.58 Aligned_cols=103 Identities=37% Similarity=0.696 Sum_probs=96.4
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
|..+++++|++.+..++++++|+||++||++|+.+.|.|.++++.+.+++.|+.|||++++.+|++|+|.++|++++|.+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 46899999996665568999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCcccCCCCCcchhHHHHHHH
Q 015217 112 GKPPVDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 112 g~~~~~~~g~~~~~~l~~~~~~~ 134 (411)
|+...+|.|..+.+.|.+|++++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 98888999999999999999864
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.82 E-value=7.9e-20 Score=140.96 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=98.8
Q ss_pred ccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChh--hh--hhhHHHHHHHHHh--CCCeEEEEEeccccHhHHHhc
Q 015217 25 LYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGH--CQ--ALTPIWEKAATVL--KGVATVAALDANEHQSLAQEY 98 (411)
Q Consensus 25 ~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~--C~--~~~~~~~~~~~~~--~~~i~~~~vd~~~~~~~~~~~ 98 (411)
.++....+..+++++|++.+.+.+.++|++||+.||++ |+ .+.|.+.+++..+ .+++.+++||+++++++|++|
T Consensus 4 ~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 4 EYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred ccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc
Confidence 35667789999999999887888889999999999976 99 8888898888888 778999999999999999999
Q ss_pred CCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217 99 GIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 99 ~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
||.++||+++|++|+.+ .|.|.++.+.+.+|+.+.+
T Consensus 84 ~I~~iPTl~lfk~G~~v-~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLDEEDSIYVFKDDEVI-EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCccccEEEEEECCEEE-EeeCCCCHHHHHHHHHHHh
Confidence 99999999999999865 4999999999999998754
No 19
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=1.1e-19 Score=140.37 Aligned_cols=100 Identities=38% Similarity=0.731 Sum_probs=90.1
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC------CCeEEEEEeccccHhHHHhcCCCccc
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK------GVATVAALDANEHQSLAQEYGIRGFP 104 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~------~~i~~~~vd~~~~~~~~~~~~i~~~P 104 (411)
.+.++++++|+ .+...+++++|.||++||++|+++.|.|+++++.++ +.+.++.+||++++++|++|+|+++|
T Consensus 2 ~v~~l~~~~f~-~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNID-DILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHH-HHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47789999999 566888999999999999999999999999998763 25899999999999999999999999
Q ss_pred EEEEEeCCCC-CcccCCCCCcchhHHHH
Q 015217 105 TIKVFVPGKP-PVDYQGARDVKPIAEFA 131 (411)
Q Consensus 105 ~~~~~~~g~~-~~~~~g~~~~~~l~~~~ 131 (411)
++++|++|+. ..+|.|.++.+.|.+|+
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999984 68999999999998874
No 20
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.81 E-value=2.4e-19 Score=137.48 Aligned_cols=103 Identities=19% Similarity=0.407 Sum_probs=93.9
Q ss_pred CCCCcEEeCccchHHH--HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH-hhCcccccc
Q 015217 158 DSNESIELNSSNFDEL--VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM-SKFNVQGFP 234 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~--~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~-~~~~v~~~P 234 (411)
..+.+.++++.+|.+. +.+.+++++|.||++||++|+.+.|.|.++|+.+++.+.|+.|||+.+..+| ++|+|.++|
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~P 86 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFP 86 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccC
Confidence 4577999999999986 3577889999999999999999999999999999988999999999999999 589999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217 235 TILVFGADKDSPIPYEGARTAGAIESF 261 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (411)
|+++|+++. .+..|.|..+.+.|..|
T Consensus 87 Tl~lf~~g~-~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 87 VIHLYYRSR-GPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEEEECCc-cceEEeCCCCHHHHHhh
Confidence 999998765 47899999999999887
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.80 E-value=4.3e-19 Score=137.42 Aligned_cols=100 Identities=52% Similarity=0.958 Sum_probs=92.0
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCCcccEEEEE
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKVF 109 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~ 109 (411)
+.++++++|++.+...+++++|.||++||++|+++.|.+.++++.+.+.+.++.+||+. ++.+|++|+|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 67899999997777778889999999999999999999999999998889999999998 8899999999999999999
Q ss_pred eCCC-----CCcccCCCCCcchhHHHH
Q 015217 110 VPGK-----PPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 110 ~~g~-----~~~~~~g~~~~~~l~~~~ 131 (411)
.+|+ ....|.|.++.+.|.+|+
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 9885 367899999999999887
No 22
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.80 E-value=7.1e-19 Score=134.88 Aligned_cols=102 Identities=43% Similarity=0.840 Sum_probs=94.1
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~ 240 (411)
.+..++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+.++.+|++++|.++|++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 47789999999988777789999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCCcccccCCCC-HHHHHHHH
Q 015217 241 ADKDSPIPYEGART-AGAIESFA 262 (411)
Q Consensus 241 ~~~~~~~~y~g~~~-~~~i~~fi 262 (411)
++++...+|.|..+ .++|.+|+
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 87566899999887 99988874
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=6.4e-19 Score=136.31 Aligned_cols=107 Identities=36% Similarity=0.707 Sum_probs=98.6
Q ss_pred CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
++.+.++++++|.+.+...+++++|+||++||++|+.+.|.++++++.+.+++.++.+||+..+.++++|++.++|++++
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 46788999999997777788999999999999999999999999999999889999999999999999999999999999
Q ss_pred EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217 109 FVPGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
|.+|+...++.|..+.+.+..++.+.+
T Consensus 82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 82 FKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999987788999999998988887664
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.78 E-value=1.6e-18 Score=132.79 Aligned_cols=100 Identities=63% Similarity=1.095 Sum_probs=91.7
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
+.++++++|.+.+...+++++|.||++||++|+.+.|.|.++++.+.+.+.++.+||++++++|++++|+++|++++|.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 56889999996666777789999999999999999999999999998899999999999999999999999999999998
Q ss_pred C-CCCcccCCCCCcchhHHHH
Q 015217 112 G-KPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 112 g-~~~~~~~g~~~~~~l~~~~ 131 (411)
| .....|.|..+.+.|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 4478999999999999886
No 25
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-18 Score=150.69 Aligned_cols=110 Identities=32% Similarity=0.647 Sum_probs=101.5
Q ss_pred CCCCcEEeCccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217 28 SSSPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105 (411)
Q Consensus 28 ~~~~~~~l~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~ 105 (411)
....+.++|+.||.+.++.+ ..||+|+||+|||++|+.+.|.+++++..++|++.+++||||+++.++.+|||+.+|+
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence 33448999999999887653 3499999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccCCCCCcchhHHHHHHHHHH
Q 015217 106 IKVFVPGKPPVDYQGARDVKPIAEFALQQIKA 137 (411)
Q Consensus 106 ~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~~ 137 (411)
++.|.+|+.+-.|.|....+.+.+|+.+.+..
T Consensus 101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999999999999988743
No 26
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.78 E-value=3.4e-18 Score=130.26 Aligned_cols=99 Identities=32% Similarity=0.820 Sum_probs=90.8
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~ 240 (411)
.+..++..+|.+.+ ...++++|.||++||++|+.+.+.|.++|+.+++.+.|+.|||+.++.+|++++|.++|++++|+
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEc
Confidence 47889999999875 55689999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccCCCCHHHHHHH
Q 015217 241 ADKDSPIPYEGARTAGAIESF 261 (411)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~f 261 (411)
+|. ....|.|..+.+.|.+|
T Consensus 81 ~g~-~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 81 SGM-NPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCC-CcccCCCCCCHHHHHhh
Confidence 765 47889999999998887
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.78 E-value=1.5e-18 Score=132.24 Aligned_cols=98 Identities=36% Similarity=0.602 Sum_probs=87.5
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 109 (411)
.+.+++.++|++ ++. +. ++|.||++||++|+.+.|.|+++++.+++ ++.++.+||++++.+|++|+|.++|+++++
T Consensus 2 ~v~~l~~~~f~~-~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTL-VLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHH-HhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 477899999994 443 33 89999999999999999999999998765 699999999999999999999999999999
Q ss_pred eCCCCCcccCCCCCcchhHHHHH
Q 015217 110 VPGKPPVDYQGARDVKPIAEFAL 132 (411)
Q Consensus 110 ~~g~~~~~~~g~~~~~~l~~~~~ 132 (411)
.+|+ +.+|.|.++.+.|..|+.
T Consensus 79 ~~g~-~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 79 KDGV-FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred CCCC-EEEecCCCCHHHHHHHHh
Confidence 8886 588999999999998875
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=9.4e-19 Score=135.26 Aligned_cols=101 Identities=18% Similarity=0.420 Sum_probs=90.1
Q ss_pred EEeCccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217 33 VQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (411)
Q Consensus 33 ~~l~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 109 (411)
..++.++|.+.+.. .+++++|.||++||++|+.+.|.++++++.+++ ++.++.|||+.++.++++++|.++|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 35677888866653 678999999999999999999999999999986 599999999999999999999999999999
Q ss_pred eCCCCCcccCCCCCcchhHHHHHH
Q 015217 110 VPGKPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 110 ~~g~~~~~~~g~~~~~~l~~~~~~ 133 (411)
++|+...++.|..+.+.+.+|+.+
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999877788999999999888864
No 29
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.77 E-value=4.3e-18 Score=130.41 Aligned_cols=103 Identities=36% Similarity=0.687 Sum_probs=96.2
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~ 241 (411)
|..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+.+.|+.||++.++.++++|+|.++|++++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 56899999999877768999999999999999999999999999999899999999999999999999999999999998
Q ss_pred CCCCcccccCCCCHHHHHHHHHHH
Q 015217 242 DKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
|.. ..+|.|..+.++|.+||.+|
T Consensus 81 g~~-~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKE-VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEE-EEEEESSSSHHHHHHHHHHH
T ss_pred CcE-EEEEECCCCHHHHHHHHHcC
Confidence 775 55999999999999999876
No 30
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.77 E-value=1.9e-18 Score=139.36 Aligned_cols=98 Identities=19% Similarity=0.423 Sum_probs=86.2
Q ss_pred ccccCCCCCcEEeCccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCC
Q 015217 23 DALYGSSSPVVQLTPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGI 100 (411)
Q Consensus 23 ~~~~~~~~~~~~l~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i 100 (411)
+..+.....+.++++++|++.+. ..+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.||++++++++++|+|
T Consensus 21 ~~~~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V 100 (152)
T cd02962 21 QPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV 100 (152)
T ss_pred CCccCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc
Confidence 34556678889999999996553 3457999999999999999999999999999875 599999999999999999999
Q ss_pred Cc------ccEEEEEeCCCCCcccCC
Q 015217 101 RG------FPTIKVFVPGKPPVDYQG 120 (411)
Q Consensus 101 ~~------~P~~~~~~~g~~~~~~~g 120 (411)
.. +||+++|++|+.+.++.|
T Consensus 101 ~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 101 STSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred eecCCcCCCCEEEEEECCEEEEEEec
Confidence 88 999999999988777776
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=1.8e-18 Score=132.19 Aligned_cols=98 Identities=37% Similarity=0.863 Sum_probs=88.0
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
++++++++|+..+ ..+ +++|.||++||++|+.+.|.+.++++.+++ .+.++.+||+++..+|++|+|.++|++++
T Consensus 2 ~~~l~~~~f~~~~-~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHI-AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHh-hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 5688999999554 434 599999999999999999999999999986 69999999999999999999999999999
Q ss_pred EeCCCCCcccCCCCCcchhHHHH
Q 015217 109 FVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 109 ~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
|++|+...+|.|..+.+.|.+|+
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 99998788999999988887764
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=2.7e-18 Score=129.55 Aligned_cols=93 Identities=26% Similarity=0.549 Sum_probs=84.6
Q ss_pred chhHHHhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcc
Q 015217 39 NFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVD 117 (411)
Q Consensus 39 ~f~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~ 117 (411)
+|++.+... +++++|+||++||++|+.+.|.+++++..+.+.+.++.+||++++.++++|+|.++|++++|.+|+...+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566555444 7899999999999999999999999999998889999999999999999999999999999998887788
Q ss_pred cCCCCCcchhHHHH
Q 015217 118 YQGARDVKPIAEFA 131 (411)
Q Consensus 118 ~~g~~~~~~l~~~~ 131 (411)
+.|..+.+.|.+|+
T Consensus 82 ~~g~~~~~~l~~~l 95 (96)
T cd02956 82 FQGAQPEEQLRQML 95 (96)
T ss_pred ecCCCCHHHHHHHh
Confidence 99999999888876
No 33
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=3.9e-18 Score=129.69 Aligned_cols=99 Identities=26% Similarity=0.378 Sum_probs=86.7
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhCCCeEEEEEec-----cccHhHHHhcCC
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYA--PWCG---HCQALTPIWEKAATVLKGVATVAALDA-----NEHQSLAQEYGI 100 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~--~~C~---~C~~~~~~~~~~~~~~~~~i~~~~vd~-----~~~~~~~~~~~i 100 (411)
.+++|++.+|+ .++.+++.+||.||+ |||+ +|+++.|++.+.+. .|.++.||| .++.+||++|+|
T Consensus 2 g~v~L~~~nF~-~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFY-KVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHH-HHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence 46789999999 677889999999999 9999 88888888877664 389999999 467889999999
Q ss_pred C--cccEEEEEeCCC--CCcccCCC-CCcchhHHHHHHH
Q 015217 101 R--GFPTIKVFVPGK--PPVDYQGA-RDVKPIAEFALQQ 134 (411)
Q Consensus 101 ~--~~P~~~~~~~g~--~~~~~~g~-~~~~~l~~~~~~~ 134 (411)
+ ++||+.+|.+|. ....|.|. ++.+.|++|+.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999885 46899997 9999999999753
No 34
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.76 E-value=3.5e-18 Score=129.48 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=80.3
Q ss_pred cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCc
Q 015217 38 NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPV 116 (411)
Q Consensus 38 ~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~ 116 (411)
++|++.+.. .+++++|.|||+||++|+.+.|.+++++..+++.+.|++||++++++++++|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 456644443 6789999999999999999999999999999988899999999999999999999999999999999888
Q ss_pred ccCCCCCcchhH
Q 015217 117 DYQGARDVKPIA 128 (411)
Q Consensus 117 ~~~g~~~~~~l~ 128 (411)
+..|..+.+.+.
T Consensus 83 ~~~G~~~~~~~~ 94 (114)
T cd02954 83 IDLGTGNNNKIN 94 (114)
T ss_pred EEcCCCCCceEE
Confidence 888877666554
No 35
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.75 E-value=1.1e-17 Score=129.13 Aligned_cols=101 Identities=33% Similarity=0.683 Sum_probs=90.7
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC------CeEEEEEeCCCchhHHhhCcccccc
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG------KVKLGHVDCDSEKSLMSKFNVQGFP 234 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~------~~~f~~v~~~~~~~l~~~~~v~~~P 234 (411)
.+..++.++|.+.+ +.+++++|.||++||++|+.+.|.|.++++.+++ .+.|+.|||+.+..++++|+|.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47889999999864 6778999999999999999999999999988642 4899999999999999999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217 235 TILVFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
++++|++|......|.|..+.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999988775568999999999999885
No 36
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=8.6e-18 Score=129.64 Aligned_cols=101 Identities=34% Similarity=0.630 Sum_probs=87.5
Q ss_pred CcEEeCccchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-cHhHHHh-cCCCcccE
Q 015217 31 PVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-HQSLAQE-YGIRGFPT 105 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-~~~~~~~-~~i~~~P~ 105 (411)
.+.+++.++|+..+. .++++++|.||++||++|+++.|.|.++++.+++ .+.++.|||+. +..+|.+ +++.++|+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 467899999996553 3578999999999999999999999999999987 49999999997 6788875 99999999
Q ss_pred EEEEeCCC-CCcccCCC-CCcchhHHHH
Q 015217 106 IKVFVPGK-PPVDYQGA-RDVKPIAEFA 131 (411)
Q Consensus 106 ~~~~~~g~-~~~~~~g~-~~~~~l~~~~ 131 (411)
+++|++|. ....|.|. ++.++|+.|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99998764 47889995 8999998874
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=7.4e-18 Score=128.83 Aligned_cols=99 Identities=52% Similarity=0.957 Sum_probs=89.8
Q ss_pred eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccccHhHHHhcCCCcccEEEEEeCC
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKVFVPG 112 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 112 (411)
|++++|+ .+..++++++|+||++||++|+.+.+.|++++..+++ ++.++.+||++++.+|++|+|.++|++++|.+|
T Consensus 1 l~~~~~~-~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFD-DIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHH-HHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4677888 4556899999999999999999999999999999987 699999999999999999999999999999988
Q ss_pred CCCcccCCCCCcchhHHHHHHH
Q 015217 113 KPPVDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~~~~~ 134 (411)
+.+.+|.|..+.+.|..|+.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 7678999999999999998754
No 38
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.75 E-value=1.9e-17 Score=128.12 Aligned_cols=101 Identities=49% Similarity=0.880 Sum_probs=93.2
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccccccEEEEE
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~~~ 239 (411)
+..++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+||+. +..++++|+|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 67899999999887778889999999999999999999999999999889999999998 8899999999999999999
Q ss_pred cCCC----CCcccccCCCCHHHHHHHH
Q 015217 240 GADK----DSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 240 ~~~~----~~~~~y~g~~~~~~i~~fi 262 (411)
.+++ .....|.|..+.++|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 8775 3578899999999999997
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=6e-18 Score=127.88 Aligned_cols=84 Identities=31% Similarity=0.626 Sum_probs=77.9
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCc
Q 015217 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV 124 (411)
Q Consensus 46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~ 124 (411)
.++++++|.||++||++|+.+.|.|+++++.+++ +.++.||++ +.+.++++|+|.++||+++|++| ...+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 4789999999999999999999999999999875 788999999 88999999999999999999988 78899999999
Q ss_pred chhHHHH
Q 015217 125 KPIAEFA 131 (411)
Q Consensus 125 ~~l~~~~ 131 (411)
+.|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9988874
No 40
>PHA02278 thioredoxin-like protein
Probab=99.74 E-value=6.4e-18 Score=127.46 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=80.5
Q ss_pred cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcCCCcccEEEEEeCCC
Q 015217 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~g~ 113 (411)
++|. ..+.++++++|+|||+||++|+.+.|.++++++.+.+++.++.+|++.+ ++++++|+|.++||+++|++|+
T Consensus 5 ~~~~-~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 5 VDLN-TAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHH-HHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 5677 4457899999999999999999999999999988666678999999976 6899999999999999999998
Q ss_pred CCcccCCCCCcchhHHH
Q 015217 114 PPVDYQGARDVKPIAEF 130 (411)
Q Consensus 114 ~~~~~~g~~~~~~l~~~ 130 (411)
.+.+..|..+.+.+.++
T Consensus 84 ~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEeCCCCHHHHHhh
Confidence 88899998887776654
No 41
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.74 E-value=9.8e-18 Score=128.63 Aligned_cols=99 Identities=48% Similarity=0.887 Sum_probs=89.5
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccc--cHhHHHhcCCCcccEEE
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE--HQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~ 107 (411)
+.++++.+|+ ..+.++++++|.||++||++|+.+.|.+.++++.+. +.+.++.+||+. ++.++++++|+++|+++
T Consensus 2 ~~~l~~~~~~-~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFR-KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHH-HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678888998 556777899999999999999999999999999887 568999999998 89999999999999999
Q ss_pred EEeCCCCCcccCCCCCcchhHHHH
Q 015217 108 VFVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 108 ~~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
+|++|+.+.+|.|..+.+.+.+|+
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999998788999999988888774
No 42
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.74 E-value=1.4e-17 Score=127.80 Aligned_cols=100 Identities=44% Similarity=0.883 Sum_probs=89.5
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--VATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
++..|+.++|++.+...+++++|+||++||++|+.+.|.+.++++.+++ ++.++.+||+++ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 3678999999966667778999999999999999999999999999887 599999999987 5888999999999999
Q ss_pred EeCCC--CCcccCCCCCcchhHHHH
Q 015217 109 FVPGK--PPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 109 ~~~g~--~~~~~~g~~~~~~l~~~~ 131 (411)
|.+|+ ...+|.|..+...+.+|+
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 99887 578899999999888874
No 43
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.74 E-value=2.5e-16 Score=134.14 Aligned_cols=164 Identities=27% Similarity=0.444 Sum_probs=139.3
Q ss_pred hhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCHHHHHHHHHHHhhhcCCC
Q 015217 194 KKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIESFALEQLETNVAP 272 (411)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~~~~~~ 272 (411)
......|.++|+.+.+.+.|+.+. +.++++++++.. |++++|+++.+....|.|. .+.+.|.+||..+..
T Consensus 6 ~~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~----- 76 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF----- 76 (184)
T ss_dssp SHHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS-----
T ss_pred cHHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc-----
Confidence 467889999999999999999977 778999999998 9999999877778999998 899999999999965
Q ss_pred CCceEeCChhHHHHhcCCcc-EEE------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeE
Q 015217 273 PEVTELTSQDVMEEKCGSAA-ICF------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPAL 339 (411)
Q Consensus 273 ~~v~~l~~~~~~~~~~~~~~-~~~------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l 339 (411)
|.+.+++..+.......+.+ +++ +.+.++.+|++++++ +.|+|+|....+.+++.||++..++|++
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~~P~~ 155 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDDLPAL 155 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSSSSEE
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCccCCEE
Confidence 99999999776665565544 222 347889999999988 9999999998899999999998889999
Q ss_pred EEeecCCCcc-ccCCCCCChhHHHHHHHH
Q 015217 340 VALNVKKGVY-TPLKSAFELEHIVEFVKE 367 (411)
Q Consensus 340 ~v~~~~~~~~-~~~~~~~~~~~i~~fi~~ 367 (411)
++++.+++++ ..+.++++.++|.+||++
T Consensus 156 vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 156 VIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999776655 345788999999999975
No 44
>PRK10996 thioredoxin 2; Provisional
Probab=99.74 E-value=1.4e-17 Score=133.85 Aligned_cols=105 Identities=27% Similarity=0.567 Sum_probs=95.9
Q ss_pred CCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 29 SSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 29 ~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
...+++++.++|+ .+..++++++|.||++||++|+.+.|.+.++++.+.+++.++.+|++++++++++|+|.++|++++
T Consensus 34 ~~~~i~~~~~~~~-~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 34 DGEVINATGETLD-KLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCCCEEcCHHHHH-HHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 3456778989999 566779999999999999999999999999999998889999999999999999999999999999
Q ss_pred EeCCCCCcccCCCCCcchhHHHHHHH
Q 015217 109 FVPGKPPVDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 109 ~~~g~~~~~~~g~~~~~~l~~~~~~~ 134 (411)
|++|+.+.++.|..+.+.+.+|+.+.
T Consensus 113 ~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 99998888899999999999998764
No 45
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=129.97 Aligned_cols=106 Identities=30% Similarity=0.499 Sum_probs=97.9
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
..+..++..+|.+.+.++..|++|.|+++||++|+.+.|.+++++..+.+++.|+.||.+++.+++.+|+|..+|++++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217 240 GADKDSPIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (411)
++|.+ .-.+.|..+.+.+.++|.+.+
T Consensus 123 knGe~-~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 123 KNGEK-VDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ECCEE-eeeecccCCHHHHHHHHHHHh
Confidence 98764 567889999999999998865
No 46
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.73 E-value=4.6e-17 Score=124.65 Aligned_cols=101 Identities=63% Similarity=1.106 Sum_probs=93.7
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~ 241 (411)
+..+++.++.+.+.+.+.+++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.++.++++|+|+++|++++|.+
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 57888999999877777789999999999999999999999999999899999999999999999999999999999988
Q ss_pred CCCCcccccCCCCHHHHHHHH
Q 015217 242 DKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi 262 (411)
+......|.|+.+.++|.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 756688999999999999986
No 47
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=3e-17 Score=126.19 Aligned_cols=100 Identities=48% Similarity=0.927 Sum_probs=89.1
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccc-cHhHHHhcCCCcccEEEE
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANE-HQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~ 108 (411)
+.++++++|++.+...+++++|.||++||++|+++.|.+..+++.++ +.+.++.+||++ .+.+|++++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56888999996555566699999999999999999999999999987 469999999999 899999999999999999
Q ss_pred EeCC-CCCcccCCCCCcchhHHHH
Q 015217 109 FVPG-KPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 109 ~~~g-~~~~~~~g~~~~~~l~~~~ 131 (411)
|.+| +....|.|.++.+.+.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9877 4578899999999888874
No 48
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.73 E-value=4.7e-17 Score=125.57 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=95.6
Q ss_pred CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChh--hh--hhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHhhCcccc
Q 015217 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGH--CK--KLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQG 232 (411)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~--c~--~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~l~~~~~v~~ 232 (411)
...+..+|+++|.+.+.++..+++++|++.||++ |+ .+.|.+.++|..+ .+++.|+.||++.++.++++|||.+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 3578899999999998888889999999999987 99 7889999999998 7789999999999999999999999
Q ss_pred ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
+||+++|++|. .+.|.|..+.+.|.+|+.+.
T Consensus 88 iPTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 88 EDSIYVFKDDE--VIEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ccEEEEEECCE--EEEeeCCCCHHHHHHHHHHH
Confidence 99999999876 45599999999999999864
No 49
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=8.8e-17 Score=149.53 Aligned_cols=227 Identities=23% Similarity=0.392 Sum_probs=146.4
Q ss_pred cccccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecc--ccHhHHH
Q 015217 22 SDALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDAN--EHQSLAQ 96 (411)
Q Consensus 22 ~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~--~~~~~~~ 96 (411)
..+++.+++.+++|+..+|+..+..+.+.++|.||++||++|+++.|.|+++++.+.+ .+.++.|||. .+..+|+
T Consensus 31 ~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCR 110 (606)
T KOG1731|consen 31 NPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCR 110 (606)
T ss_pred CCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHh
Confidence 3457888899999999999977777778999999999999999999999999998875 6899999997 5668999
Q ss_pred hcCCCcccEEEEEeCCCCC----cccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHH
Q 015217 97 EYGIRGFPTIKVFVPGKPP----VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDE 172 (411)
Q Consensus 97 ~~~i~~~P~~~~~~~g~~~----~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 172 (411)
.|+|.++|++.+|+.+... ..+.|+..+.++.+.+.+.+.+.. .. +.++ ++ ++.--+++.+-..
T Consensus 111 ef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~---~~-~~~~---~W-----P~f~pl~~~~~~~ 178 (606)
T KOG1731|consen 111 EFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED---AQ-NRYP---SW-----PNFDPLKDTTTLE 178 (606)
T ss_pred hcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH---hh-hcCC---CC-----CCCCCCCCcchHH
Confidence 9999999999999775332 344556666677776665543221 11 1111 11 1111222222222
Q ss_pred HHhc----CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcc
Q 015217 173 LVLK----SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI 247 (411)
Q Consensus 173 ~~~~----~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~ 247 (411)
.+.+ ....+.+.|-.. ...-.+..+-..+.. .+.+..+-++..-.+.+ ++....|...++++|..+++
T Consensus 179 ~l~~~~~~~~~yvAiv~e~~------~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l 251 (606)
T KOG1731|consen 179 ELDEGISTTANYVAIVFETE------PSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPL 251 (606)
T ss_pred HHhcccccccceeEEEEecC------CcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCccccc
Confidence 2222 223444445321 122233444444433 35555554455555555 88889999999998776444
Q ss_pred cccCCCCHHHHHHHHHHHhhh
Q 015217 248 PYEGARTAGAIESFALEQLET 268 (411)
Q Consensus 248 ~y~g~~~~~~i~~fi~~~~~~ 268 (411)
. ....+.+...+-|.+.++.
T Consensus 252 ~-~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 252 W-PSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred c-cccccHHHHHHHHHHHhcC
Confidence 3 3334555666666665553
No 50
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.7e-16 Score=146.62 Aligned_cols=209 Identities=37% Similarity=0.606 Sum_probs=165.8
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
.....++...+..++.....+++|.||++||++|+.+.+.|.+++..+++.+.++.|||+.+..+|++|+|.++|++.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f 108 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVF 108 (383)
T ss_pred cchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEE
Confidence 33444446677777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHHHhhhcCC--CCC-ceEeCChhHHHHhcCCc---cEEE----------eHHHHHHH
Q 015217 240 GADKDSPIPYEGARTAGAIESFALEQLETNVA--PPE-VTELTSQDVMEEKCGSA---AICF----------YLEMLLSV 303 (411)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~--~~~-v~~l~~~~~~~~~~~~~---~~~~----------~~~~~~~~ 303 (411)
..+ ..++.|.|..+.+.+.+|+...+..... .+. +.+++..+.-......+ -+.| +.+.|.++
T Consensus 109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 109 RPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred cCC-CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHH
Confidence 988 5699999999999999999888764432 333 55555544433222221 2333 33789999
Q ss_pred HHHhhc-CccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHccC
Q 015217 304 AEKFKR-GHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRG 371 (411)
Q Consensus 304 a~~~~~-~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g 371 (411)
|..+.. ..+..+.++++.....+.++++.. +|++.++.+...-...|.+.-+.+.|.+|+.+...-
T Consensus 188 a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~--~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 188 AKLLKSKENVELGKIDATVHKSLASRLEVRG--YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHhccCcceEEEeeccchHHHHhhhhcccC--CceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 999874 458888888877788999999986 999988876555133456778999999999988544
No 51
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=4.6e-17 Score=124.06 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=78.4
Q ss_pred CccchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---hHHHhcCCCcccEEEEEeC
Q 015217 36 TPNNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---SLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 36 ~~~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~~~~~~~i~~~P~~~~~~~ 111 (411)
+.++|++.+.. ++++++|.||++||++|+.+.|.++++++.+ +.+.|+.||++++. +++++|+|.++|++++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 34667755543 4889999999999999999999999999998 66899999999874 8999999999999999999
Q ss_pred CCCCcccCCCCCcchhHHHH
Q 015217 112 GKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 112 g~~~~~~~g~~~~~~l~~~~ 131 (411)
|+.+.++.|.. +..+.+.+
T Consensus 81 G~~v~~~~G~~-~~~l~~~~ 99 (103)
T cd02985 81 GEKIHEEEGIG-PDELIGDV 99 (103)
T ss_pred CeEEEEEeCCC-HHHHHHHH
Confidence 98888888854 44444443
No 52
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=7e-17 Score=123.13 Aligned_cols=99 Identities=32% Similarity=0.640 Sum_probs=88.9
Q ss_pred CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP 115 (411)
Q Consensus 36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~ 115 (411)
+.++|.+.+...+++++|+||++||++|+.+.+.+.++++.+.+++.++.+|+++++.++++|++.++|++++|++|+..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45677755555567999999999999999999999999999988899999999999999999999999999999988877
Q ss_pred cccCCCCCcchhHHHHHHH
Q 015217 116 VDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 116 ~~~~g~~~~~~l~~~~~~~ 134 (411)
.++.|..+.+.+.+|+.+.
T Consensus 82 ~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 8888999989999988754
No 53
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.71 E-value=2.7e-16 Score=134.68 Aligned_cols=201 Identities=23% Similarity=0.417 Sum_probs=150.8
Q ss_pred CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-----CeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-----KVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-----~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~ 240 (411)
+..++.. +.+.+..++|.||++||+.++.+.|.|.++|..++. ++.+|.|||+.+..++.+|.|.++||+.+|+
T Consensus 2 t~~N~~~-il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDS-ILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHH-hhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4556666 456788999999999999999999999999988864 6999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCC-ccEEE-e--------HHHHHHHHHHhhcC
Q 015217 241 ADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGS-AAICF-Y--------LEMLLSVAEKFKRG 310 (411)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~~~-~--------~~~~~~~a~~~~~~ 310 (411)
+|.--...|.|.++++.+.+||.+.+. ..+.++.+.++++....+ +..++ + .+.++++|.-++++
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s-----~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~d 155 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLS-----DPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDD 155 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhc-----cHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhc
Confidence 887655689999999999999999985 458888888888876653 33333 2 37999999999998
Q ss_pred ccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCcc-ccCCCCC-ChhHHHHHHHHHccCCCCCCCCCC
Q 015217 311 HYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVY-TPLKSAF-ELEHIVEFVKEAGRGGKGNLPLDG 380 (411)
Q Consensus 311 ~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~-~~~~~~~-~~~~i~~fi~~~~~g~~~~~~~~~ 380 (411)
..|..--++ .... ....+.+ ++++++..... .+|.|.+ +-+.|..||.+=--+-.+..+.++
T Consensus 156 -c~f~V~~gD----~~~~--~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN 219 (375)
T KOG0912|consen 156 -CVFLVGFGD----LLKP--HEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFEN 219 (375)
T ss_pred -cEEEeeccc----cccC--CCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhcc
Confidence 776543321 1111 1111122 56666553332 2688885 679999999886555444444443
No 54
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.70 E-value=2e-16 Score=124.67 Aligned_cols=112 Identities=46% Similarity=0.890 Sum_probs=103.4
Q ss_pred CCceEeCChhHHHHhcCCccEEE-----------------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCC
Q 015217 273 PEVTELTSQDVMEEKCGSAAICF-----------------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYG 335 (411)
Q Consensus 273 ~~v~~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~ 335 (411)
|.+.++++++.++..|..+.+|+ +.+.++.+|++|+++++.|+|+|.+++..+++.||++..+
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 67899999999999998888888 3579999999999999999999999999999999998778
Q ss_pred CCeEEEeecCCCccccCCCCCChhHHHHHHHHHccCCCCCCCCCCCCcc
Q 015217 336 YPALVALNVKKGVYTPLKSAFELEHIVEFVKEAGRGGKGNLPLDGTPSI 384 (411)
Q Consensus 336 ~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~~g~~~~~~~~~~p~~ 384 (411)
+|++++++..+++|.++++++|.++|.+|+.+++.|+....|+..+|.+
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~~~p~~ 130 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGPTLPVNGLPKV 130 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcccccCCCCCCC
Confidence 9999999987779987999999999999999999999999999999863
No 55
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=3.3e-16 Score=132.17 Aligned_cols=161 Identities=10% Similarity=0.154 Sum_probs=115.5
Q ss_pred CccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217 36 TPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP 115 (411)
Q Consensus 36 ~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~ 115 (411)
+.+++.+.+....+.++++|||+||++|+.+.+.+.++++.++ .+.|+.||.+ |+|.++|++++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 3456664433234789999999999999999999999999986 5999999977 999999999999999988
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeC-----CCC
Q 015217 116 VDYQGARDVKPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFA-----PWC 190 (411)
Q Consensus 116 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~-----~~c 190 (411)
.++.|. ++..+..++.++.. .++... .....+.+.++++ ++.|.. ++|
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~----------------------~~~~~~--~~~~v~~li~~~~--Vvvf~Kg~~~~p~C 128 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQ----------------------KGSSED--TVEKIERLIRNHK--ILLFMKGSKTFPFC 128 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcC----------------------CCCHHH--HHHHHHHHHhcCC--EEEEEccCCCCCCC
Confidence 888876 47778888876531 111100 1122222344444 445544 699
Q ss_pred hhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh----hCccccccEEEE
Q 015217 191 GHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS----KFNVQGFPTILV 238 (411)
Q Consensus 191 ~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~----~~~v~~~P~i~~ 238 (411)
++|+.....+.+. .+.|..+|...++++.+ .-|...+|.|++
T Consensus 129 ~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 129 RFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred hhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 9999999888853 36666777776665433 345667898886
No 56
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.70 E-value=7.8e-17 Score=121.21 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=89.0
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
..+-.++..+|+ ...+.+++++|.||++| |++|+.+.|.++++++.+++.+.|+.+|++++++++.+|+|.++||++
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLD-DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHH-HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 456689999999 56688999999999997 999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcccCCCCCcchhH
Q 015217 108 VFVPGKPPVDYQGARDVKPIA 128 (411)
Q Consensus 108 ~~~~g~~~~~~~g~~~~~~l~ 128 (411)
+|++|+.+.+..|..+.+.+.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 999998888888887766543
No 57
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=8.6e-17 Score=122.52 Aligned_cols=97 Identities=49% Similarity=0.976 Sum_probs=87.2
Q ss_pred EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
+++.++|. ..+.++++++|.||++||++|+.+.+.|.++++.+ .+.+.++.+||+++..+|++|+|.++|++++|.+
T Consensus 2 ~l~~~~~~-~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFD-ELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHH-HHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 56778888 55566669999999999999999999999999999 5689999999999999999999999999999988
Q ss_pred C-CCCcccCCCCCcchhHHHH
Q 015217 112 G-KPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 112 g-~~~~~~~g~~~~~~l~~~~ 131 (411)
+ ....+|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 6689999999988888764
No 58
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=135.37 Aligned_cols=178 Identities=27% Similarity=0.528 Sum_probs=129.4
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC
Q 015217 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA 252 (411)
Q Consensus 176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~ 252 (411)
++...|+|.||+|||++|+++.|+|.++.-.+++ -++++.+||+..+.++.+|||+++|+|.+|+++. .+.|.|+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~--a~dYRG~ 118 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH--AIDYRGG 118 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe--eeecCCC
Confidence 3456999999999999999999999999988876 4999999999999999999999999999999766 8999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCceEeCC-hhHHHHhcCCccEEE---------eHHHHHHHHHHhhcCccEEEEecCCCc
Q 015217 253 RTAGAIESFALEQLETNVAPPEVTELTS-QDVMEEKCGSAAICF---------YLEMLLSVAEKFKRGHYSFVWAAAGKQ 322 (411)
Q Consensus 253 ~~~~~i~~fi~~~~~~~~~~~~v~~l~~-~~~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~f~~i~~~~~ 322 (411)
++.+.|.+|..+... +.+..++. +.++..+...++..| +.+.+..+|...-.. ..|+-..
T Consensus 119 R~Kd~iieFAhR~a~-----aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~~~-a~FfSas---- 188 (468)
T KOG4277|consen 119 REKDAIIEFAHRCAA-----AIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKFSV-ARFFSAS---- 188 (468)
T ss_pred ccHHHHHHHHHhccc-----ceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhheee-eeeeccc----
Confidence 999999999988764 66666666 444555555554333 445555555433212 2233211
Q ss_pred hhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHc
Q 015217 323 PDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAG 369 (411)
Q Consensus 323 ~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~ 369 (411)
.+++-... +....|+++++ +++.|..++ +.+.+++.+||+.-+
T Consensus 189 eeVaPe~~-~~kempaV~VF--KDetf~i~d-e~dd~dLseWinRER 231 (468)
T KOG4277|consen 189 EEVAPEEN-DAKEMPAVAVF--KDETFEIED-EGDDEDLSEWINRER 231 (468)
T ss_pred cccCCccc-chhhccceEEE--ccceeEEEe-cCchhHHHHHHhHhh
Confidence 22222222 22348999999 566665554 346678999998643
No 59
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.70 E-value=1.3e-16 Score=121.44 Aligned_cols=95 Identities=20% Similarity=0.433 Sum_probs=82.4
Q ss_pred eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEEEeCCC
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 113 (411)
-+.++|+ .++.++++++|+||++||++|+.+.|.+.+++..+++ .+.|+.+|++ +.+++++|+|+++|++++|++|+
T Consensus 5 ~~~~~~~-~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWE-ELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHH-HHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 3567788 5667899999999999999999999999999999885 4789999999 78899999999999999999998
Q ss_pred CCcccCCCCCcchhHHHHH
Q 015217 114 PPVDYQGARDVKPIAEFAL 132 (411)
Q Consensus 114 ~~~~~~g~~~~~~l~~~~~ 132 (411)
.+.+..|. +.+.+.+++.
T Consensus 83 ~~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred EEEEEecC-ChHHHHHHHh
Confidence 77777774 7777777665
No 60
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.69 E-value=2.1e-16 Score=120.41 Aligned_cols=98 Identities=32% Similarity=0.649 Sum_probs=87.2
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
.+..++..+|.+.+ +. .++|.||++||++|+.+.|.|.+++..++. .+.++.+||+.++.++++|+|.++|++++|
T Consensus 2 ~v~~l~~~~f~~~~-~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVL-EG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHh-CC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 47889999999864 32 379999999999999999999999998875 599999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHH
Q 015217 240 GADKDSPIPYEGARTAGAIESFAL 263 (411)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~ 263 (411)
++|. ...|.|..+.++|.+|+.
T Consensus 79 ~~g~--~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 79 KDGV--FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred CCCC--EEEecCCCCHHHHHHHHh
Confidence 7764 578999999999999985
No 61
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.69 E-value=2.3e-16 Score=121.64 Aligned_cols=102 Identities=25% Similarity=0.614 Sum_probs=89.3
Q ss_pred CcEEeCccchHHHHh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-chhHHh-hCccccccE
Q 015217 161 ESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-EKSLMS-KFNVQGFPT 235 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-~~~l~~-~~~v~~~P~ 235 (411)
.|.+++..+|...+. +.+++++|.||++||++|+.+.+.|.++++.+++. +.++.|||+. +..+++ .+++..+|+
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 378889999998764 34679999999999999999999999999999874 9999999987 577886 599999999
Q ss_pred EEEEcCCCCCcccccCC-CCHHHHHHHH
Q 015217 236 ILVFGADKDSPIPYEGA-RTAGAIESFA 262 (411)
Q Consensus 236 i~~~~~~~~~~~~y~g~-~~~~~i~~fi 262 (411)
+++|.+++...+.|.|. ++.++|.+|+
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99998877678999995 7999998885
No 62
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.68 E-value=4e-16 Score=119.61 Aligned_cols=101 Identities=46% Similarity=0.819 Sum_probs=90.5
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
++..|+..+|.+.+.+.+++++|+||++||++|+.+.+.|.++++.+.+ ++.|+.+||+.+ +++..+++.++|++++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF 79 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence 4788999999998777778999999999999999999999999999987 599999999876 5888999999999999
Q ss_pred EcCCC-CCcccccCCCCHHHHHHHH
Q 015217 239 FGADK-DSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 239 ~~~~~-~~~~~y~g~~~~~~i~~fi 262 (411)
|.++. .....|.|..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 80 FPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EcCCCcCCceEccCCcCHHHHHhhC
Confidence 98776 4578899999999999885
No 63
>PRK09381 trxA thioredoxin; Provisional
Probab=99.68 E-value=6.2e-16 Score=119.54 Aligned_cols=106 Identities=30% Similarity=0.630 Sum_probs=95.5
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
..+++++..+|.+.+.+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++....++++|++..+|++++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 45888999999987777788999999999999999999999999999998999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217 240 GADKDSPIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (411)
++|. ...++.|..+.+.|..|+..++
T Consensus 83 ~~G~-~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGE-VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence 7654 3567789889999999998764
No 64
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.68 E-value=3.6e-16 Score=119.66 Aligned_cols=93 Identities=43% Similarity=0.886 Sum_probs=82.1
Q ss_pred cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 114 (411)
++|+ .+ .++++++|.||++||++|+.+.|.|+++++.+++ .+.++.+||+..+.++++++|.++|++++|.+| .
T Consensus 7 ~~~~-~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFK-DV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhh-hh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 6777 44 4578999999999999999999999999999853 489999999999999999999999999999766 4
Q ss_pred CcccCCCCCcchhHHHHHH
Q 015217 115 PVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 115 ~~~~~g~~~~~~l~~~~~~ 133 (411)
...|.|..+.+.+.+|+.+
T Consensus 84 ~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred ceeecCCCCHHHHHHHHHh
Confidence 5789999999999998875
No 65
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.67 E-value=6.2e-16 Score=118.80 Aligned_cols=101 Identities=44% Similarity=0.823 Sum_probs=91.1
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCC-chhHHhhCccccccEEEE
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS-EKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~-~~~l~~~~~v~~~P~i~~ 238 (411)
+..++..++...+.+.+++++|.||++||++|+.+.+.|.++++.+. +.+.++.+||+. .+.++++|++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56788899998765566699999999999999999999999999997 469999999999 899999999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHH
Q 015217 239 FGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 239 ~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
|.+++.....|.|..+.++|.+|+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 988766688999999999998885
No 66
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=5.4e-16 Score=122.29 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=85.7
Q ss_pred CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE-EEeCCC
Q 015217 36 TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK-VFVPGK 113 (411)
Q Consensus 36 ~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~-~~~~g~ 113 (411)
+.++|++.+. ..+++++|.||++||++|+.+.|.++++++.+++.+.|+.||+|+.++++..|+|++.|+++ +|++|.
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 3567885554 46789999999999999999999999999999988999999999999999999999777666 889887
Q ss_pred -CCcccCC--------CCCcchhHHHHHHHHHHHH
Q 015217 114 -PPVDYQG--------ARDVKPIAEFALQQIKALL 139 (411)
Q Consensus 114 -~~~~~~g--------~~~~~~l~~~~~~~~~~~~ 139 (411)
.+.+..| ..+.+++++-+...++.++
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 4667777 4566677777766665543
No 67
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.67 E-value=4.8e-16 Score=118.74 Aligned_cols=98 Identities=40% Similarity=0.892 Sum_probs=87.4
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
+..++.++|.+.+.+ +.++|.||++||++|+.+.|.|.++++.+.+ .+.++.+||+.+..++++|+|..+|++++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 678899999997633 3599999999999999999999999999987 69999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHH
Q 015217 239 FGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 239 ~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
|+++. ...+|.|..+.++|.+||
T Consensus 80 ~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCC-eeeEeeCCCCHHHHHhhC
Confidence 97665 467899999999988874
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=3.2e-15 Score=129.83 Aligned_cols=179 Identities=20% Similarity=0.265 Sum_probs=130.1
Q ss_pred CCeEEEEEeC---CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC
Q 015217 178 KDLWIVEFFA---PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253 (411)
Q Consensus 178 ~~~~lv~f~~---~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~ 253 (411)
+...++.|++ +||++|+.+.|.+++++..+.. .+.++.+|.+.+++++++|+|.++||+++|++|.....++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4455777888 9999999999999999999854 35566666668999999999999999999998765335889988
Q ss_pred CHHHHHHHHHHHhhhcCCCCCceEeCC--hhHHHHhcCCccEE-E------eH----HHHHHHHHHhhcCccEEEEecCC
Q 015217 254 TAGAIESFALEQLETNVAPPEVTELTS--QDVMEEKCGSAAIC-F------YL----EMLLSVAEKFKRGHYSFVWAAAG 320 (411)
Q Consensus 254 ~~~~i~~fi~~~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~-~------~~----~~~~~~a~~~~~~~~~f~~i~~~ 320 (411)
+.+.+.+|+...+..... -..++. .+.+.....+..+. | .+ ..++.++.++ + .+.+..+|.+
T Consensus 99 ~~~~l~~~i~~~~~~~~~---~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~-~i~~~~vD~~ 173 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQG---EPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-D-KILGEMIEAN 173 (215)
T ss_pred CHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-C-ceEEEEEeCC
Confidence 889999999887643222 223333 22233333333333 2 22 4455555543 2 3888889999
Q ss_pred CchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHH
Q 015217 321 KQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE 367 (411)
Q Consensus 321 ~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~ 367 (411)
..+++++++|+.. .|++++++ +++ .+.|..+.+++.+||.+
T Consensus 174 ~~~~~~~~~~V~~--vPtl~i~~--~~~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 174 ENPDLAEKYGVMS--VPKIVINK--GVE--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CCHHHHHHhCCcc--CCEEEEec--CCE--EEECCCCHHHHHHHHHh
Confidence 9999999999986 99999984 222 16677888999999864
No 69
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.66 E-value=6.6e-16 Score=117.51 Aligned_cols=100 Identities=21% Similarity=0.451 Sum_probs=84.2
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCCeEEEEEeC-----CCchhHHhhCcc
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFA--PWCG---HCKKLAPEWKKAANNLKGKVKLGHVDC-----DSEKSLMSKFNV 230 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~--~~c~---~c~~~~~~~~~~a~~~~~~~~f~~v~~-----~~~~~l~~~~~v 230 (411)
.++.|+..+|.+. ...++.++|.||+ +||+ +|+.+.+.+.+++. .+.++.||| ..+.+||++|+|
T Consensus 2 g~v~L~~~nF~~~-v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKV-IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHH-HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCC
Confidence 3788999999996 5777889999999 8888 66666666665554 389999999 457889999999
Q ss_pred c--cccEEEEEcCCC-CCcccccCC-CCHHHHHHHHHHH
Q 015217 231 Q--GFPTILVFGADK-DSPIPYEGA-RTAGAIESFALEQ 265 (411)
Q Consensus 231 ~--~~P~i~~~~~~~-~~~~~y~g~-~~~~~i~~fi~~~ 265 (411)
+ ++|||.+|+++. ..+..|.|. ++.+.|++|+.++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999773 457899997 9999999999875
No 70
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.66 E-value=4.9e-16 Score=118.99 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=81.6
Q ss_pred cchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccc----cHhHHHhcCCCcccEEEEEe
Q 015217 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIKVFV 110 (411)
Q Consensus 38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~~~~ 110 (411)
++|. .+..++++++|.||++||++|+.+.+.+ .++++.+.+++.++.+|+++ ...++++|++.++|++++|.
T Consensus 2 ~~~~-~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALA-QALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHH-HHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 3566 5667899999999999999999999988 67888887789999999986 57899999999999999998
Q ss_pred --CCCCCcccCCCCCcchhHHHH
Q 015217 111 --PGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 111 --~g~~~~~~~g~~~~~~l~~~~ 131 (411)
+|+.+.++.|..+.+.+.+++
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHh
Confidence 577789999999999888775
No 71
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.66 E-value=1.1e-15 Score=131.25 Aligned_cols=110 Identities=36% Similarity=0.835 Sum_probs=97.0
Q ss_pred CCCcEEeCccchHHHHhcC----CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccccc
Q 015217 159 SNESIELNSSNFDELVLKS----KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFP 234 (411)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~----~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P 234 (411)
...+.++++.+|.+.+... .++++|.||++||++|+.+.|.|.++++.+++.+.|+.+||+.++.++++|+|.++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 4579999999999976543 479999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCcccc-cCCCCHHHHHHHHHHHhhhcC
Q 015217 235 TILVFGADKDSPIPY-EGARTAGAIESFALEQLETNV 270 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y-~g~~~~~~i~~fi~~~~~~~~ 270 (411)
++++|++|. .+.| .|..+.+++.+|+.+.+....
T Consensus 109 Tl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 109 TLLLFDKGK--MYQYEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred EEEEEECCE--EEEeeCCCCCHHHHHHHHHHHHHhhc
Confidence 999999764 4444 577899999999999986543
No 72
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.66 E-value=4.9e-16 Score=120.07 Aligned_cols=101 Identities=19% Similarity=0.412 Sum_probs=86.8
Q ss_pred EEeCccchHHHHhc--CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 163 IELNSSNFDELVLK--SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 163 ~~l~~~~~~~~~~~--~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
..++.++|.+.+.. .+++++|.||++||++|+.+.|.|.++++.+.+ ++.++.||++.++.++++++|.++|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 34566777765543 567999999999999999999999999999986 599999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCHHHHHHHHHH
Q 015217 240 GADKDSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 240 ~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (411)
+++. ....+.|..+.+.|.+|+.+
T Consensus 87 ~~g~-~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQ-VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCE-EEEEecCCCCHHHHHHHHhc
Confidence 8664 35666898999999999864
No 73
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.65 E-value=1.4e-15 Score=114.75 Aligned_cols=93 Identities=27% Similarity=0.550 Sum_probs=82.6
Q ss_pred chHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcc
Q 015217 169 NFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPI 247 (411)
Q Consensus 169 ~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~ 247 (411)
+|.+.+.+. +++++|.||++||++|+.+.+.+.+++..+.+.+.++.||++.+..++++|+|.++|++++|++|. ...
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence 566666555 679999999999999999999999999999988999999999999999999999999999998554 356
Q ss_pred cccCCCCHHHHHHHH
Q 015217 248 PYEGARTAGAIESFA 262 (411)
Q Consensus 248 ~y~g~~~~~~i~~fi 262 (411)
.+.|..+.+.|..|+
T Consensus 81 ~~~g~~~~~~l~~~l 95 (96)
T cd02956 81 GFQGAQPEEQLRQML 95 (96)
T ss_pred eecCCCCHHHHHHHh
Confidence 789999999998886
No 74
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.65 E-value=3.1e-16 Score=121.75 Aligned_cols=92 Identities=23% Similarity=0.361 Sum_probs=80.7
Q ss_pred CCcEEeCccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 30 SPVVQLTPNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
..+.+++.++|.+.+... +++++|+||++||++|+.+.|.++++++.+.+ +.|+.||+++. .++++|+|.++|+++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 346788899999666554 38999999999999999999999999999865 78999999988 999999999999999
Q ss_pred EEeCCCCCcccCCCCC
Q 015217 108 VFVPGKPPVDYQGARD 123 (411)
Q Consensus 108 ~~~~g~~~~~~~g~~~ 123 (411)
+|++|+.+.++.|..+
T Consensus 82 ~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 82 VYKNGELIDNIVGFEE 97 (113)
T ss_pred EEECCEEEEEEecHHH
Confidence 9999988778777544
No 75
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.65 E-value=1.3e-15 Score=116.36 Aligned_cols=99 Identities=53% Similarity=0.936 Sum_probs=89.7
Q ss_pred eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHhhCccccccEEEEEcCC
Q 015217 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD 242 (411)
Q Consensus 165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~ 242 (411)
|+..+|.+.+ ..+++++|.||++||+.|+.+.+.|.+++..+.+ .+.++.+||+.+..++++|++..+|++++|+++
T Consensus 1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4567788765 4788999999999999999999999999999988 699999999999999999999999999999887
Q ss_pred CCCcccccCCCCHHHHHHHHHHH
Q 015217 243 KDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 243 ~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
+. ...|.|..+.+.|..||.++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 76 88999999999999999875
No 76
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.2e-15 Score=131.95 Aligned_cols=109 Identities=33% Similarity=0.657 Sum_probs=99.3
Q ss_pred CCCCcEEeCccchHHHHhcC--CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217 158 DSNESIELNSSNFDELVLKS--KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~--~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~ 235 (411)
..+.+.++|+.+|...++.. ..|++|+||++||++|+.+.|.+++++..+++++.+++|||+.++.++..|||+++|+
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCe
Confidence 44559999999999988665 3499999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217 236 ILVFGADKDSPIPYEGARTAGAIESFALEQLE 267 (411)
Q Consensus 236 i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~ 267 (411)
+++|++|.. .--|.|....+.|..|+.++..
T Consensus 101 V~af~dGqp-VdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 101 VYAFKDGQP-VDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred EEEeeCCcC-ccccCCCCcHHHHHHHHHHhcC
Confidence 999998874 5678898888999999999874
No 77
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.64 E-value=1.8e-15 Score=117.22 Aligned_cols=84 Identities=42% Similarity=0.888 Sum_probs=74.2
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEeccc--cHhHHHhcCCCcccE
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANE--HQSLAQEYGIRGFPT 105 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~--~~~~~~~~~i~~~P~ 105 (411)
.+.+++.++|+..+...+++++|.||++||++|+.+.|.|+++++.+++ .+.++.+||+. +..+|++|+|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4778999999976666678999999999999999999999999998763 58999999964 568999999999999
Q ss_pred EEEEeCCCC
Q 015217 106 IKVFVPGKP 114 (411)
Q Consensus 106 ~~~~~~g~~ 114 (411)
+++|++|..
T Consensus 82 ~~lf~~~~~ 90 (114)
T cd02992 82 LRYFPPFSK 90 (114)
T ss_pred EEEECCCCc
Confidence 999988763
No 78
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.3e-16 Score=115.84 Aligned_cols=79 Identities=29% Similarity=0.639 Sum_probs=72.5
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCc
Q 015217 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDV 124 (411)
Q Consensus 45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~ 124 (411)
...+++++|+|||+||++|+.+.|.+.+++.++++ +.|++||+++..+++++++|...||+++|++|+...++.|....
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 34568999999999999999999999999999998 99999999999999999999999999999999888888776543
No 79
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.64 E-value=1.9e-15 Score=121.72 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=84.3
Q ss_pred cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc--HhHHHhcCCCcccEEEEEe-CCCC
Q 015217 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--QSLAQEYGIRGFPTIKVFV-PGKP 114 (411)
Q Consensus 38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~P~~~~~~-~g~~ 114 (411)
.+++ .+..++++++|+||++||++|+.+.|.+.++++.+.+.+.|+.||++.. ..++++|+|.++|++++|. +|+.
T Consensus 11 ~~~~-~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPE-VALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHH-HHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 4566 5667899999999999999999999999999999987778888877754 5899999999999999995 6777
Q ss_pred CcccCCCCCcchhHHHHHHHHH
Q 015217 115 PVDYQGARDVKPIAEFALQQIK 136 (411)
Q Consensus 115 ~~~~~g~~~~~~l~~~~~~~~~ 136 (411)
+.++.|..+.+.+.+++.+.+.
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 7888999988888888887663
No 80
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.63 E-value=1.8e-15 Score=114.15 Aligned_cols=91 Identities=26% Similarity=0.505 Sum_probs=83.4
Q ss_pred hHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCC
Q 015217 41 KSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG 120 (411)
Q Consensus 41 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g 120 (411)
+..+.+.+++++|+||++||+.|+.+.|.++++++.+.+++.++.+|++++++++.++++.++|++++|++|+.+.++.|
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 33556788999999999999999999999999999998889999999999999999999999999999999888889999
Q ss_pred CCCcchhHHHH
Q 015217 121 ARDVKPIAEFA 131 (411)
Q Consensus 121 ~~~~~~l~~~~ 131 (411)
..+.+.+.+|+
T Consensus 86 ~~~~~~~~~~l 96 (97)
T cd02949 86 VKMKSEYREFI 96 (97)
T ss_pred CccHHHHHHhh
Confidence 99988888775
No 81
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.63 E-value=2e-15 Score=114.07 Aligned_cols=84 Identities=27% Similarity=0.602 Sum_probs=76.7
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCccccccEEEEEcCCCCCcccccCCCC
Q 015217 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGART 254 (411)
Q Consensus 176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (411)
..+++++|.||++||++|+.+.|.|.++++.+++ +.++.||++ ..+.++++|+|.++||+++|+++ ...+|.|..+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~ 92 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRT 92 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCC
Confidence 4567999999999999999999999999999975 788999988 78899999999999999999877 4789999999
Q ss_pred HHHHHHHH
Q 015217 255 AGAIESFA 262 (411)
Q Consensus 255 ~~~i~~fi 262 (411)
.+.|.+|+
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99999885
No 82
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.63 E-value=1.7e-15 Score=117.03 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=78.9
Q ss_pred CcEEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEE
Q 015217 31 PVVQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVF 109 (411)
Q Consensus 31 ~~~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 109 (411)
.+..+++ ++|. ..+.++++++|+||++||++|+.+.|.++++++.+++ +.|+.||+++.++++++|+|.++|++++|
T Consensus 5 ~v~~i~~~~~~~-~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFF-EIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHH-HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 4567777 7888 5556788999999999999999999999999998865 89999999999999999999999999999
Q ss_pred eCCCCCcccCCCC
Q 015217 110 VPGKPPVDYQGAR 122 (411)
Q Consensus 110 ~~g~~~~~~~g~~ 122 (411)
++|+.+.++.|..
T Consensus 83 k~G~~v~~~~g~~ 95 (113)
T cd02989 83 KNGKTVDRIVGFE 95 (113)
T ss_pred ECCEEEEEEECcc
Confidence 9998766665543
No 83
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.62 E-value=1.7e-15 Score=114.87 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=73.5
Q ss_pred cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCc
Q 015217 168 SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP 246 (411)
Q Consensus 168 ~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~ 246 (411)
+++.+.+.. .+++++|.||++||++|+.+.|.+.+++..+.+.+.|+.||.+.+++++++|+|.++||+++|++|.. .
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~-v 81 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH-M 81 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE-E
Confidence 456665543 56799999999999999999999999999999889999999999999999999999999999998764 4
Q ss_pred ccccCCCC
Q 015217 247 IPYEGART 254 (411)
Q Consensus 247 ~~y~g~~~ 254 (411)
.+..|..+
T Consensus 82 ~~~~G~~~ 89 (114)
T cd02954 82 KIDLGTGN 89 (114)
T ss_pred EEEcCCCC
Confidence 44455443
No 84
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.62 E-value=5.1e-15 Score=113.47 Aligned_cols=99 Identities=44% Similarity=0.820 Sum_probs=87.4
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCC--chhHHhhCccccccEEE
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDS--EKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~ 237 (411)
+..++..++.+.+ ..+++++|.||++||++|+.+.+.+.++++.+. +.+.++.+||+. +..++++++++++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5778888898865 556699999999999999999999999999997 568999999998 88999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHHHHH
Q 015217 238 VFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
+|+++. ...+|.|..+.+.+.+|+
T Consensus 81 ~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 998765 477899999999988874
No 85
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.61 E-value=4.1e-15 Score=112.41 Aligned_cols=92 Identities=22% Similarity=0.459 Sum_probs=77.0
Q ss_pred ccchhHHHhcC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCC
Q 015217 37 PNNFKSKVLNA-NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPP 115 (411)
Q Consensus 37 ~~~f~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~ 115 (411)
.++|++.+... +++++|.||++||++|+.+.+.++++++.+.+.+.++.+|+++.++++++|++.++|++++|.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 35667444333 58999999999999999999999999999867899999999999999999999999999999988877
Q ss_pred cccCCCCCcchhHH
Q 015217 116 VDYQGARDVKPIAE 129 (411)
Q Consensus 116 ~~~~g~~~~~~l~~ 129 (411)
.++.|. ..+.|.+
T Consensus 82 ~~~~g~-~~~~l~~ 94 (97)
T cd02984 82 DRVSGA-DPKELAK 94 (97)
T ss_pred EEEeCC-CHHHHHH
Confidence 677774 3444443
No 86
>PLN02309 5'-adenylylsulfate reductase
Probab=99.61 E-value=5.2e-15 Score=139.65 Aligned_cols=107 Identities=33% Similarity=0.583 Sum_probs=93.4
Q ss_pred CCCCcEEeCccchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-ccHhHHH-hcCCCc
Q 015217 28 SSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-EHQSLAQ-EYGIRG 102 (411)
Q Consensus 28 ~~~~~~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-~~~~~~~-~~~i~~ 102 (411)
.+..+..|+.++|++.+. ..+++++|.||++||++|+.+.|.|.++++.+.+ .+.|+.+||+ .+..+|. +|+|.+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 456788999999995542 5788999999999999999999999999999976 5999999999 8888997 599999
Q ss_pred ccEEEEEeCCCC-CcccCC-CCCcchhHHHHHHH
Q 015217 103 FPTIKVFVPGKP-PVDYQG-ARDVKPIAEFALQQ 134 (411)
Q Consensus 103 ~P~~~~~~~g~~-~~~~~g-~~~~~~l~~~~~~~ 134 (411)
+||+++|++|.. ...|.| .++.+.|+.|+...
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999988753 678875 79999999999753
No 87
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.61 E-value=5e-15 Score=139.79 Aligned_cols=106 Identities=33% Similarity=0.549 Sum_probs=91.5
Q ss_pred CCCCcEEeCccchhHHHh--cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEeccccH-hHH-HhcCCCc
Q 015217 28 SSSPVVQLTPNNFKSKVL--NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDANEHQ-SLA-QEYGIRG 102 (411)
Q Consensus 28 ~~~~~~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~~~~~-~~~-~~~~i~~ 102 (411)
.+..+++|+.++|++.+. ..+++++|.||++||++|+.+.|.|+++++.+.+. +.|+.|||+.+. .++ ++|+|.+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 566899999999996552 47889999999999999999999999999999874 899999999764 455 6899999
Q ss_pred ccEEEEEeCCC-CCcccC-CCCCcchhHHHHHH
Q 015217 103 FPTIKVFVPGK-PPVDYQ-GARDVKPIAEFALQ 133 (411)
Q Consensus 103 ~P~~~~~~~g~-~~~~~~-g~~~~~~l~~~~~~ 133 (411)
+||+++|++|. ....|. |.++.++|+.|+..
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999999885 367897 58999999999864
No 88
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.61 E-value=5.6e-15 Score=112.42 Aligned_cols=98 Identities=49% Similarity=0.948 Sum_probs=86.6
Q ss_pred EeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (411)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~ 241 (411)
.++..++.+.+ .+.++++|.||++||++|+.+.+.|.++++.+ ...+.|+.+|++.+..++++|+|..+|++++|.+
T Consensus 2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46677888865 44449999999999999999999999999999 4689999999999999999999999999999988
Q ss_pred CCCCcccccCCCCHHHHHHHH
Q 015217 242 DKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi 262 (411)
++....+|.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 755689999999999988774
No 89
>PHA02278 thioredoxin-like protein
Probab=99.60 E-value=5e-15 Score=111.72 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=77.7
Q ss_pred cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCccccccEEEEEcCCC
Q 015217 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNVQGFPTILVFGADK 243 (411)
Q Consensus 168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~v~~~P~i~~~~~~~ 243 (411)
.+|.+.+ ..+++++|.||++||++|+.+.|.+.+++..+..++.|+.+|++.+ +.++++|+|.++||+++|++|.
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 4566644 6778999999999999999999999999988766678899998875 6899999999999999999875
Q ss_pred CCcccccCCCCHHHHHHH
Q 015217 244 DSPIPYEGARTAGAIESF 261 (411)
Q Consensus 244 ~~~~~y~g~~~~~~i~~f 261 (411)
. ..+..|..+.+.+.++
T Consensus 84 ~-v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 L-VKKYEDQVTPMQLQEL 100 (103)
T ss_pred E-EEEEeCCCCHHHHHhh
Confidence 3 5677888888777665
No 90
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.60 E-value=9.5e-15 Score=111.25 Aligned_cols=99 Identities=31% Similarity=0.630 Sum_probs=87.3
Q ss_pred CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCC
Q 015217 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS 245 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~ 245 (411)
+.+++.+.+.+..++++|+||++||++|+.+.+.+.++++.+.+++.|+.+|++.++.++++|++..+|++++|+++..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~- 80 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE- 80 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE-
Confidence 4566777766556799999999999999999999999999998889999999999999999999999999999976543
Q ss_pred cccccCCCCHHHHHHHHHHH
Q 015217 246 PIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~ 265 (411)
...+.|..+.+.+.+|+.++
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 56778888999999999875
No 91
>PRK10996 thioredoxin 2; Provisional
Probab=99.60 E-value=1.3e-14 Score=116.72 Aligned_cols=105 Identities=29% Similarity=0.620 Sum_probs=93.2
Q ss_pred CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
...+..++..++.+. .+.+++++|.||++||++|+.+.+.|.++++.+.+.+.|+.+|++.++.++++|+|.++|++++
T Consensus 34 ~~~~i~~~~~~~~~~-i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii 112 (139)
T PRK10996 34 DGEVINATGETLDKL-LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMI 112 (139)
T ss_pred CCCCEEcCHHHHHHH-HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEE
Confidence 445777888889885 4668899999999999999999999999999999899999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 239 FGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 239 ~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
|++|. ....+.|..+.+.+.+|+.++
T Consensus 113 ~~~G~-~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNGQ-VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence 98654 466778999999999999875
No 92
>PTZ00051 thioredoxin; Provisional
Probab=99.60 E-value=6.1e-15 Score=111.64 Aligned_cols=87 Identities=31% Similarity=0.620 Sum_probs=76.8
Q ss_pred EEeCc-cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 33 VQLTP-NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 33 ~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
.+++. +++. .++..+++++|+||++||++|+.+.+.+.++++.+.+ +.++.+|+++...++++|++.++|++++|++
T Consensus 3 ~~i~~~~~~~-~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 3 HIVTSQAEFE-STLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred EEecCHHHHH-HHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 44544 4566 6778889999999999999999999999999998754 8999999999999999999999999999999
Q ss_pred CCCCcccCCC
Q 015217 112 GKPPVDYQGA 121 (411)
Q Consensus 112 g~~~~~~~g~ 121 (411)
|+.+.++.|.
T Consensus 81 g~~~~~~~G~ 90 (98)
T PTZ00051 81 GSVVDTLLGA 90 (98)
T ss_pred CeEEEEEeCC
Confidence 9888888885
No 93
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.59 E-value=9.1e-15 Score=109.79 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=69.4
Q ss_pred cchhHHHhc-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217 38 NNFKSKVLN-ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 38 ~~f~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 114 (411)
+++++.+.. ++++++|.|+++||++|+.+.|.++++++.+++.+.|+.||+++.+++++.|+|...|++++|.+|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 456645543 58999999999999999999999999999998769999999999999999999999999999998875
No 94
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.58 E-value=2.1e-14 Score=108.08 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=86.4
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPW--CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
.....++..+|.+.+ ..+...+|.||++| |++|+.+.|.+.++++.+.+++.|+.+|++.++.++.+|+|.++||++
T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 10 HGWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred cCCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 457789999999865 77789999999997 999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHH
Q 015217 238 VFGADKDSPIPYEGARTAGAIE 259 (411)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~ 259 (411)
+|++|.. .....|..+.+++.
T Consensus 89 ~fkdGk~-v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRY-VGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEE-EEEEeCccCHHHHh
Confidence 9998753 55677877766653
No 95
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.57 E-value=3.3e-13 Score=114.86 Aligned_cols=173 Identities=28% Similarity=0.391 Sum_probs=142.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCC-CCcccCCC-CCcchhHHHHHHHHHHHHHHh
Q 015217 65 ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGK-PPVDYQGA-RDVKPIAEFALQQIKALLKER 142 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~-~~~~~~g~-~~~~~l~~~~~~~~~~~~~~~ 142 (411)
.....+.++++.+.+.+.|+.+. ++++++++++.. |++++|+++. ....|.|. .+.+.|.+|+...
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~-------- 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN-------- 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh--------
Confidence 35568899999999889999888 777999999999 9999998854 36889998 8999999999877
Q ss_pred hcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch
Q 015217 143 LSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK 222 (411)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~ 222 (411)
.-+.+..++..++..+......+++++|..........+...+..+|+.+++++.|+.+|++..+
T Consensus 75 ---------------~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~ 139 (184)
T PF13848_consen 75 ---------------SFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP 139 (184)
T ss_dssp ---------------SSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH
T ss_pred ---------------ccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH
Confidence 46889999999999864333344777787665666788888999999999999999999999888
Q ss_pred hHHhhCccc--cccEEEEEcCCCCC-cccccCCCCHHHHHHHHHH
Q 015217 223 SLMSKFNVQ--GFPTILVFGADKDS-PIPYEGARTAGAIESFALE 264 (411)
Q Consensus 223 ~l~~~~~v~--~~P~i~~~~~~~~~-~~~y~g~~~~~~i~~fi~~ 264 (411)
.+++.+|+. .+|+++++...... .+.+.|..+.++|.+|+..
T Consensus 140 ~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 140 RLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 999999998 89999999744432 2334788999999999863
No 96
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.57 E-value=3.1e-14 Score=108.88 Aligned_cols=93 Identities=42% Similarity=0.937 Sum_probs=81.0
Q ss_pred cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244 (411)
Q Consensus 168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~ 244 (411)
++|.+ + ..+++++|.||++||++|+.+.|.|.++++.+++ .+.++.+|++....++++|+|.++|++++|+++.
T Consensus 7 ~~~~~-~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKD-V-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhh-h-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 45555 2 3467999999999999999999999999999954 4899999999999999999999999999997543
Q ss_pred CcccccCCCCHHHHHHHHHH
Q 015217 245 SPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 245 ~~~~y~g~~~~~~i~~fi~~ 264 (411)
...|.|..+.+.|.+|+++
T Consensus 84 -~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 84 -AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred -ceeecCCCCHHHHHHHHHh
Confidence 6779999999999999876
No 97
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.56 E-value=2.7e-14 Score=108.78 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=77.5
Q ss_pred ccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHhhCccccccEEEEEcCC
Q 015217 167 SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILVFGAD 242 (411)
Q Consensus 167 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~l~~~~~v~~~P~i~~~~~~ 242 (411)
.++|.+.+... +++++|.||++||++|+.+.|.+.++++.+ ..+.|+.||++.+. .++++|+|.++|++++|++|
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 45677766544 789999999999999999999999999999 67999999998764 79999999999999999766
Q ss_pred CCCcccccCCCCHHHHHHHHH
Q 015217 243 KDSPIPYEGARTAGAIESFAL 263 (411)
Q Consensus 243 ~~~~~~y~g~~~~~~i~~fi~ 263 (411)
. ...++.| ...+.+.+-+.
T Consensus 82 ~-~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 82 E-KIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred e-EEEEEeC-CCHHHHHHHHH
Confidence 5 3677888 44566666554
No 98
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.54 E-value=3.2e-14 Score=106.29 Aligned_cols=91 Identities=34% Similarity=0.688 Sum_probs=80.7
Q ss_pred chhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCccc
Q 015217 39 NFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDY 118 (411)
Q Consensus 39 ~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~ 118 (411)
+|+ ..+..+++++|.||++||++|+.+.+.+.++++. .+++.++.+|+++++++++++++.++|++++|.+|+.+..+
T Consensus 2 ~~~-~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFE-ELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chH-HHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 455 4455569999999999999999999999999988 66799999999999999999999999999999999878888
Q ss_pred CCCCCcchhHHHH
Q 015217 119 QGARDVKPIAEFA 131 (411)
Q Consensus 119 ~g~~~~~~l~~~~ 131 (411)
.|..+.+.+.+++
T Consensus 80 ~g~~~~~~l~~~i 92 (93)
T cd02947 80 VGADPKEELEEFL 92 (93)
T ss_pred ecCCCHHHHHHHh
Confidence 8888877777765
No 99
>PLN02309 5'-adenylylsulfate reductase
Probab=99.54 E-value=5.6e-14 Score=132.68 Aligned_cols=107 Identities=28% Similarity=0.667 Sum_probs=95.2
Q ss_pred CCCCcEEeCccchHHHHh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC-CchhHHh-hCcccc
Q 015217 158 DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD-SEKSLMS-KFNVQG 232 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~-~~~~l~~-~~~v~~ 232 (411)
....++.++.++|.+.+. +.+++++|.||++||++|+.+.+.|.+++..+.+. +.|+.+|++ .+..+++ +|+|.+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 556889999999998763 46779999999999999999999999999999874 999999999 7788886 699999
Q ss_pred ccEEEEEcCCCCCcccccC-CCCHHHHHHHHHH
Q 015217 233 FPTILVFGADKDSPIPYEG-ARTAGAIESFALE 264 (411)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi~~ 264 (411)
+||+++|+++...++.|.| .++.++|..|+..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 9999999888767889985 6999999999875
No 100
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.54 E-value=4.2e-14 Score=109.36 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=79.0
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC--CcccCCCC
Q 015217 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP--PVDYQGAR 122 (411)
Q Consensus 45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~--~~~~~g~~ 122 (411)
+..+..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+++++++++|+|.++|++++|++|+. ..+|.|..
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 345667999999999999999999999999886 679999999999999999999999999999987643 23788988
Q ss_pred CcchhHHHHHHHH
Q 015217 123 DVKPIAEFALQQI 135 (411)
Q Consensus 123 ~~~~l~~~~~~~~ 135 (411)
+...+.+++...+
T Consensus 98 ~~~el~~~i~~i~ 110 (113)
T cd02975 98 AGYEFASLIEDIV 110 (113)
T ss_pred chHHHHHHHHHHH
Confidence 8889999988764
No 101
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.54 E-value=5.8e-14 Score=132.59 Aligned_cols=107 Identities=29% Similarity=0.651 Sum_probs=93.4
Q ss_pred CCCCcEEeCccchHHHHh--cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCch-hH-HhhCcccc
Q 015217 158 DSNESIELNSSNFDELVL--KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDSEK-SL-MSKFNVQG 232 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~-~l-~~~~~v~~ 232 (411)
.+..|+.|+..+|.+.+. +.+++++|.||++||++|+.+.|.|.++|+.+.+. +.|+.||++.+. .+ +++|+|.+
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence 566899999999999763 46779999999999999999999999999999875 899999998654 34 47899999
Q ss_pred ccEEEEEcCCCCCccccc-CCCCHHHHHHHHHH
Q 015217 233 FPTILVFGADKDSPIPYE-GARTAGAIESFALE 264 (411)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~-g~~~~~~i~~fi~~ 264 (411)
+|++++|+++...++.|. |.++.+.|..|+..
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999998876688897 58999999999864
No 102
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.53 E-value=1.4e-13 Score=106.65 Aligned_cols=98 Identities=37% Similarity=0.807 Sum_probs=81.2
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCC--chhHHhhCccccccE
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDS--EKSLMSKFNVQGFPT 235 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~--~~~l~~~~~v~~~P~ 235 (411)
++.+++..+|.+.+.+.+++++|.||++||++|+.+.+.|.+++..+++ .+.|+.+||+. +..++++|++..+|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 4788999999998877778999999999999999999999999998864 48999999864 568999999999999
Q ss_pred EEEEcCCCCC---cccccCC-CCHHHH
Q 015217 236 ILVFGADKDS---PIPYEGA-RTAGAI 258 (411)
Q Consensus 236 i~~~~~~~~~---~~~y~g~-~~~~~i 258 (411)
+++|+++..+ ...|.|. ...+++
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999776532 2456665 444444
No 103
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=1.1e-13 Score=105.30 Aligned_cols=95 Identities=24% Similarity=0.473 Sum_probs=79.0
Q ss_pred CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~ 244 (411)
+.+++.+. .+.+++++|.||++||++|+.+.+.+.+++..+.+ .+.|+.+|++ +.+++++|+|+.+|++++|++|..
T Consensus 6 ~~~~~~~~-i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEEL-LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHH-HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 45667775 46788999999999999999999999999999986 4889999988 778999999999999999987653
Q ss_pred CcccccCCCCHHHHHHHHHH
Q 015217 245 SPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 245 ~~~~y~g~~~~~~i~~fi~~ 264 (411)
..+..| .+.+.+.++|.+
T Consensus 84 -~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 84 -VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred -EEEEec-CChHHHHHHHhh
Confidence 445555 477888887753
No 104
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.52 E-value=1.2e-13 Score=111.59 Aligned_cols=92 Identities=23% Similarity=0.495 Sum_probs=80.2
Q ss_pred CCCcEEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCcccc----
Q 015217 159 SNESIELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQG---- 232 (411)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~---- 232 (411)
...+..++.++|.+.+... .++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.||++.+++++++|+|..
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v 106 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLS 106 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCc
Confidence 4678899999999876544 46999999999999999999999999999985 59999999999999999999988
Q ss_pred --ccEEEEEcCCCCCcccccC
Q 015217 233 --FPTILVFGADKDSPIPYEG 251 (411)
Q Consensus 233 --~P~i~~~~~~~~~~~~y~g 251 (411)
+||+++|++|.. ..++.|
T Consensus 107 ~~~PT~ilf~~Gk~-v~r~~G 126 (152)
T cd02962 107 KQLPTIILFQGGKE-VARRPY 126 (152)
T ss_pred CCCCEEEEEECCEE-EEEEec
Confidence 999999987653 555665
No 105
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.52 E-value=5.1e-14 Score=110.05 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=78.6
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----------hHHHhc
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----------SLAQEY 98 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----------~~~~~~ 98 (411)
+.+..++.+++. ..+.+++.++|+|+++||++|+.+.|.+.++++. .++.++.+|.+.+. ++.++|
T Consensus 6 ~~~~~it~~~~~-~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRAL-EALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHH-HHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 345678888888 5567788999999999999999999999999998 34567777777432 566776
Q ss_pred C----CCcccEEEEEeCCCCCcccCC-CCCcchhHHHH
Q 015217 99 G----IRGFPTIKVFVPGKPPVDYQG-ARDVKPIAEFA 131 (411)
Q Consensus 99 ~----i~~~P~~~~~~~g~~~~~~~g-~~~~~~l~~~~ 131 (411)
+ +.++|++++|++|+.+.+..| ..+.++|.+++
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 5 456999999999998888878 44577777665
No 106
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.52 E-value=1.2e-13 Score=105.74 Aligned_cols=93 Identities=27% Similarity=0.394 Sum_probs=80.1
Q ss_pred chHHHHhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----chhHHhhCccccccEEEEEcC
Q 015217 169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----EKSLMSKFNVQGFPTILVFGA 241 (411)
Q Consensus 169 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----~~~l~~~~~v~~~P~i~~~~~ 241 (411)
.+.+. .+.+++++|.||++||++|+.+.+.+ .+++..+++++.++.+|++. ...++++|++.++|++++|+.
T Consensus 3 ~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 3 ALAQA-LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHH-HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 45553 56778999999999999999999988 67888888789999999876 578999999999999999986
Q ss_pred -CCCCcccccCCCCHHHHHHHH
Q 015217 242 -DKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 242 -~~~~~~~y~g~~~~~~i~~fi 262 (411)
+++...++.|..+.+++.+++
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 566688899999999988875
No 107
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.52 E-value=7.3e-14 Score=110.72 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=80.0
Q ss_pred HHhcCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEecccc-------------HhHHHhcCCCcccE
Q 015217 43 KVLNAN-GVVLVEFYAPWCGHCQALTPIWE---KAATVLKGVATVAALDANEH-------------QSLAQEYGIRGFPT 105 (411)
Q Consensus 43 ~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i~~~P~ 105 (411)
.+.+++ ++++|.||++||++|+.+.+.+. .+.+.+.+++.++.+|.+.+ ..++.+|++.++|+
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 456778 99999999999999999999884 56666666788899998864 68999999999999
Q ss_pred EEEEeCC--CCCcccCCCCCcchhHHHHHHHHHH
Q 015217 106 IKVFVPG--KPPVDYQGARDVKPIAEFALQQIKA 137 (411)
Q Consensus 106 ~~~~~~g--~~~~~~~g~~~~~~l~~~~~~~~~~ 137 (411)
++++.++ +.+.++.|..+.+.+..++...+..
T Consensus 88 ~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 88 VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 9999864 6678899999988888888776543
No 108
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.52 E-value=7e-14 Score=116.42 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=77.5
Q ss_pred CCCcEEeCc-cchhHHHhcCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE
Q 015217 29 SSPVVQLTP-NNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT 105 (411)
Q Consensus 29 ~~~~~~l~~-~~f~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~ 105 (411)
-..+.+++. ++|...+...+ .+++|+||++||++|+.+.|.|.+++..+. .+.|++||+++. .++.+|+|..+||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 456778888 89996655443 499999999999999999999999999986 589999999987 8999999999999
Q ss_pred EEEEeCCCCCcccCC
Q 015217 106 IKVFVPGKPPVDYQG 120 (411)
Q Consensus 106 ~~~~~~g~~~~~~~g 120 (411)
+++|++|+.+.++.|
T Consensus 139 lllyk~G~~v~~~vG 153 (175)
T cd02987 139 LLVYKGGELIGNFVR 153 (175)
T ss_pred EEEEECCEEEEEEec
Confidence 999999987555544
No 109
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.50 E-value=1.1e-13 Score=107.37 Aligned_cols=89 Identities=24% Similarity=0.363 Sum_probs=77.2
Q ss_pred CCcEEeCccchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 160 NESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
..+..+++.+|.+.+.+.. .+++|.||++||++|+.+.+.+++++..+. .+.|+.||++.+ .++++|+|..+|+++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 4578889999998876553 799999999999999999999999999986 489999999888 999999999999999
Q ss_pred EEcCCCCCcccccC
Q 015217 238 VFGADKDSPIPYEG 251 (411)
Q Consensus 238 ~~~~~~~~~~~y~g 251 (411)
+|++|.. ..++.|
T Consensus 82 ~f~~G~~-v~~~~G 94 (113)
T cd02957 82 VYKNGEL-IDNIVG 94 (113)
T ss_pred EEECCEE-EEEEec
Confidence 9998753 445555
No 110
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1e-13 Score=104.56 Aligned_cols=86 Identities=29% Similarity=0.590 Sum_probs=73.5
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCH
Q 015217 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTA 255 (411)
Q Consensus 176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~ 255 (411)
..+++++|.||++||++|+.+.|.|.++|.+|.+ +.|..||+++..+++++++|...||+++|++|.+ ...+.|.. .
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~-~~~~vGa~-~ 95 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE-VDEVVGAN-K 95 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEE-EEEEecCC-H
Confidence 3468999999999999999999999999999998 9999999999999999999999999999987764 56666653 3
Q ss_pred HHHHHHHHH
Q 015217 256 GAIESFALE 264 (411)
Q Consensus 256 ~~i~~fi~~ 264 (411)
..+.+.+..
T Consensus 96 ~~l~~~i~~ 104 (106)
T KOG0907|consen 96 AELEKKIAK 104 (106)
T ss_pred HHHHHHHHh
Confidence 366555543
No 111
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.49 E-value=4.4e-13 Score=108.00 Aligned_cols=101 Identities=17% Similarity=0.354 Sum_probs=84.4
Q ss_pred cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEEcCCCCC
Q 015217 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDS 245 (411)
Q Consensus 168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~~~~~~ 245 (411)
.++.+. ...+++++|.||++||++|+.+.+.+.++++.+.+++.|+.|+.+.. ..++++|+|.++|++++|..+++.
T Consensus 11 ~~~~~a-~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 11 TPPEVA-LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCHHHH-HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 455553 46678999999999999999999999999999988888888877654 478999999999999999755555
Q ss_pred cccccCCCCHHHHHHHHHHHhhhc
Q 015217 246 PIPYEGARTAGAIESFALEQLETN 269 (411)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~~~~~ 269 (411)
...+.|..+.+.+..++.+.+...
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 667889888899999998877544
No 112
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.48 E-value=3.2e-13 Score=101.77 Aligned_cols=92 Identities=23% Similarity=0.470 Sum_probs=82.2
Q ss_pred hHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccc
Q 015217 170 FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPY 249 (411)
Q Consensus 170 ~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y 249 (411)
+...+.+.+++++++|+++||+.|+.+.+.+.++++.+.+++.+..+|++.++++++++++.++|++++|+++ +...++
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~ 83 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVKEI 83 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEEEE
Confidence 4555677888999999999999999999999999999988899999999999999999999999999999865 457788
Q ss_pred cCCCCHHHHHHHH
Q 015217 250 EGARTAGAIESFA 262 (411)
Q Consensus 250 ~g~~~~~~i~~fi 262 (411)
.|..+.+++.+|+
T Consensus 84 ~g~~~~~~~~~~l 96 (97)
T cd02949 84 SGVKMKSEYREFI 96 (97)
T ss_pred eCCccHHHHHHhh
Confidence 8988888888775
No 113
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.47 E-value=9.4e-13 Score=101.71 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=81.0
Q ss_pred CCcEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 160 NESIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 160 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
..+..+++ .+|.+.+ .++.+++|.||++||++|+.+.+.+.++++.+.+ +.|+.||.+....++++|+|..+|++++
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~ 81 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVIL 81 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence 34677777 7777754 5567999999999999999999999999999864 8999999999999999999999999999
Q ss_pred EcCCCCCcccccC--------CCCHHHHHHHH
Q 015217 239 FGADKDSPIPYEG--------ARTAGAIESFA 262 (411)
Q Consensus 239 ~~~~~~~~~~y~g--------~~~~~~i~~fi 262 (411)
|++|.. ..++.| +++.+++..|+
T Consensus 82 fk~G~~-v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 82 FKNGKT-VDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EECCEE-EEEEECccccCCCCCCCHHHHHHHh
Confidence 987753 223333 34556666554
No 114
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.46 E-value=5.8e-13 Score=105.19 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=78.2
Q ss_pred ccchHHHHh-cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE-EEcCCCC
Q 015217 167 SSNFDELVL-KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL-VFGADKD 244 (411)
Q Consensus 167 ~~~~~~~~~-~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~-~~~~~~~ 244 (411)
..++.+.+. ..+++++|.||++||++|+.+.|.+.++|+.+.+.+.|+.||+++.++++++|+|++.|+++ +|+++..
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeE
Confidence 466777665 34679999999999999999999999999999988999999999999999999999777666 7777653
Q ss_pred CcccccC--------CCCHHHHHHHHHHH
Q 015217 245 SPIPYEG--------ARTAGAIESFALEQ 265 (411)
Q Consensus 245 ~~~~y~g--------~~~~~~i~~fi~~~ 265 (411)
..-+..| ..+.+++.+-+...
T Consensus 91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 91 MIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EEEEecccccccccccCCHHHHHHHHHHH
Confidence 3444456 24445555544443
No 115
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.45 E-value=5e-13 Score=102.13 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=76.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCC--cccEEEEEeC--CCCCcccCCCCC
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR--GFPTIKVFVP--GKPPVDYQGARD 123 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~--g~~~~~~~g~~~ 123 (411)
++++++.|+++||++|+.+.+.+.++++.+++++.|+.+|+++.+.+++.+|+. ++|+++++.. |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 789999999999999999999999999999999999999999999999999999 9999999988 544333344458
Q ss_pred cchhHHHHHHH
Q 015217 124 VKPIAEFALQQ 134 (411)
Q Consensus 124 ~~~l~~~~~~~ 134 (411)
.+.|.+|+.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 88898888753
No 116
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.44 E-value=8.9e-13 Score=99.51 Aligned_cols=93 Identities=19% Similarity=0.419 Sum_probs=76.3
Q ss_pred cchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCc
Q 015217 168 SNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSP 246 (411)
Q Consensus 168 ~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~ 246 (411)
+++.+.+... +++++|.||++||++|+.+.+.+.+++..+...+.++.+|++..+.++++|++..+|++++|++|. ..
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~ 81 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT-IV 81 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-EE
Confidence 4566655444 589999999999999999999999999998778999999999999999999999999999998654 34
Q ss_pred ccccCCCCHHHHHHHH
Q 015217 247 IPYEGARTAGAIESFA 262 (411)
Q Consensus 247 ~~y~g~~~~~~i~~fi 262 (411)
.++.| .+.+.|.+.|
T Consensus 82 ~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 82 DRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEeC-CCHHHHHHhh
Confidence 45555 4556666544
No 117
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.7e-13 Score=112.51 Aligned_cols=98 Identities=28% Similarity=0.532 Sum_probs=83.1
Q ss_pred CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217 36 TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 36 ~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 114 (411)
++++|+..+. ...+.++|.||++||++|++..|.++.++.+|++ ..|.+||.++.+..+..+||...||+++|.+|..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 4467886653 3557999999999999999999999999999976 6899999999999999999999999999999988
Q ss_pred CcccCCCCCcchhHHHHHHHH
Q 015217 115 PVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 115 ~~~~~g~~~~~~l~~~~~~~~ 135 (411)
+.++.|. ++..|...+.+++
T Consensus 87 id~~qGA-d~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYA 106 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHh
Confidence 8888875 5555666665554
No 118
>PTZ00051 thioredoxin; Provisional
Probab=99.43 E-value=1.1e-12 Score=99.20 Aligned_cols=93 Identities=30% Similarity=0.550 Sum_probs=76.0
Q ss_pred cEEeCcc-chHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217 162 SIELNSS-NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (411)
Q Consensus 162 v~~l~~~-~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~ 240 (411)
+.++++. ++.+ +.+.++.+++.||++||++|+.+.+.+.++++.+. .+.|+.+|++.+..++++|++.++|++++|+
T Consensus 2 v~~i~~~~~~~~-~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFES-TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHH-HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 4455554 4444 56778899999999999999999999999999876 4899999999999999999999999999998
Q ss_pred CCCCCcccccCCCCHHHH
Q 015217 241 ADKDSPIPYEGARTAGAI 258 (411)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i 258 (411)
+|.. ...+.|. ..++|
T Consensus 80 ~g~~-~~~~~G~-~~~~~ 95 (98)
T PTZ00051 80 NGSV-VDTLLGA-NDEAL 95 (98)
T ss_pred CCeE-EEEEeCC-CHHHh
Confidence 6653 5667774 44444
No 119
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.43 E-value=9.6e-13 Score=98.92 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=67.9
Q ss_pred chHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217 169 NFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244 (411)
Q Consensus 169 ~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~ 244 (411)
++.+.+.. .+++++|.|+++||++|+.+.|.+.++|..+.+.+.|+.||.++.+++++.|+|...|+.++|++|..
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 45555544 47899999999999999999999999999998779999999999999999999999999999987763
No 120
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.41 E-value=1.2e-12 Score=95.47 Aligned_cols=80 Identities=26% Similarity=0.433 Sum_probs=70.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHH
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~ 130 (411)
.+..||++||++|+.+.+.++++++.+++.+.+..||++++++++++||+.++|++++ +|+ .++.|..+.+.+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4779999999999999999999999988789999999999999999999999999875 554 478898888888888
Q ss_pred HHHH
Q 015217 131 ALQQ 134 (411)
Q Consensus 131 ~~~~ 134 (411)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 7653
No 121
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.41 E-value=1e-12 Score=110.83 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCCcEEeCccchhHHHhcCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217 29 SSPVVQLTPNNFKSKVLNAN--GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106 (411)
Q Consensus 29 ~~~~~~l~~~~f~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~ 106 (411)
-..+.+++.++|...+...+ .+++|+||++||++|+.+.|.|.+++..+. .+.|++||+++. +..|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 46688899999997665543 589999999999999999999999999986 589999999853 589999999999
Q ss_pred EEEeCCCCCcccCCC
Q 015217 107 KVFVPGKPPVDYQGA 121 (411)
Q Consensus 107 ~~~~~g~~~~~~~g~ 121 (411)
++|++|+.+.++.|.
T Consensus 157 liyk~G~~v~~ivG~ 171 (192)
T cd02988 157 LVYRNGDIVKQFIGL 171 (192)
T ss_pred EEEECCEEEEEEeCc
Confidence 999999876666653
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.39 E-value=6.6e-12 Score=104.58 Aligned_cols=103 Identities=20% Similarity=0.295 Sum_probs=84.4
Q ss_pred CCCcEEeCc-cchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217 159 SNESIELNS-SNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (411)
Q Consensus 159 ~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~ 235 (411)
-..+..+++ .+|.+.+.+.. .+++|.||++||++|+.+.+.+.++|..+. .+.|+.||++.. .++.+|+|..+||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 466888988 99998776544 389999999999999999999999999986 599999999876 8999999999999
Q ss_pred EEEEcCCCCCcccccC-------CCCHHHHHHHHHH
Q 015217 236 ILVFGADKDSPIPYEG-------ARTAGAIESFALE 264 (411)
Q Consensus 236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~ 264 (411)
+++|++|.. ...+.| .++.+.|..++.+
T Consensus 139 lllyk~G~~-v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGEL-IGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEE-EEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999998653 222222 4667777777654
No 123
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.38 E-value=4.1e-12 Score=98.24 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC-CcccccCCCCH
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD-SPIPYEGARTA 255 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~-~~~~y~g~~~~ 255 (411)
.....+|+|+++||++|+.+.+.+.+++..+ +++.|..+|.+.++.++++|+|.++|++++|++++. ..+.+.|..+.
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~ 99 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG 99 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence 4556888899999999999999999999887 679999999999999999999999999999986543 23478898888
Q ss_pred HHHHHHHHHHh
Q 015217 256 GAIESFALEQL 266 (411)
Q Consensus 256 ~~i~~fi~~~~ 266 (411)
.++.+|+..-+
T Consensus 100 ~el~~~i~~i~ 110 (113)
T cd02975 100 YEFASLIEDIV 110 (113)
T ss_pred HHHHHHHHHHH
Confidence 89888887653
No 124
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.37 E-value=1.4e-11 Score=104.42 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=71.8
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----------------------hHHHhcCCC
Q 015217 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----------------------SLAQEYGIR 101 (411)
Q Consensus 45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----------------------~~~~~~~i~ 101 (411)
..++++++|.||++||++|++..|.+.++.+. .+.++.|+.++++ .+++.||+.
T Consensus 65 ~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 65 LTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 34689999999999999999999999888652 4666777654322 355678999
Q ss_pred cccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217 102 GFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQIKAL 138 (411)
Q Consensus 102 ~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~~~~ 138 (411)
++|+.++++ +|+...++.|..+.+.+.+++...++..
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 999877775 6766788899999999888888877554
No 125
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.37 E-value=4.4e-11 Score=118.78 Aligned_cols=187 Identities=17% Similarity=0.225 Sum_probs=151.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEe-CCCC-CcccCCCCCc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFV-PGKP-PVDYQGARDV 124 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~~-~~~~~g~~~~ 124 (411)
.+++.++.|+.+.|..|.++...+++++. +.++|.+...|...+.+++++|++...|++.++. +|.. -++|.|-...
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 45567889999999999999999999885 4678888889999999999999999999999985 4433 5899999999
Q ss_pred chhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCC-eEEEEEeCCCChhhhhhhHHHHHH
Q 015217 125 KPIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKD-LWIVEFFAPWCGHCKKLAPEWKKA 203 (411)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~-~~lv~f~~~~c~~c~~~~~~~~~~ 203 (411)
.++..|+...+. ...+-..|+.+.... +..-++ ..+-.|.+++|++|......+.++
T Consensus 444 ~Ef~s~i~~i~~---------------------~~~~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~ 501 (555)
T TIGR03143 444 HELNSFILALYN---------------------AAGPGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRI 501 (555)
T ss_pred HhHHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHH
Confidence 999999988763 223344565554444 444444 456677899999999999999999
Q ss_pred HHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217 204 ANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 204 a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
+.... ++..-.++.+..++++++|+|.++|++++ ++ ...+.|..+.+++..++
T Consensus 502 ~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i---~~--~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 502 ASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV---DD--QQVYFGKKTIEEMLELI 554 (555)
T ss_pred HHhCC-CceEEEEECcccHHHHHhCCceecCEEEE---CC--EEEEeeCCCHHHHHHhh
Confidence 99865 68888899999999999999999999998 33 35577988888888775
No 126
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.36 E-value=2.3e-12 Score=99.09 Aligned_cols=77 Identities=16% Similarity=0.380 Sum_probs=66.0
Q ss_pred cchhHHHhc-CCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-------cHhHHHhcCCC-
Q 015217 38 NNFKSKVLN-ANGVVLVEFYA-------PWCGHCQALTPIWEKAATVLKGVATVAALDANE-------HQSLAQEYGIR- 101 (411)
Q Consensus 38 ~~f~~~~~~-~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-------~~~~~~~~~i~- 101 (411)
++|.+.+.. ++++++|.||| +||++|+.+.|.+++++..+++++.|+.||+++ +.++..+++|.
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 556644433 36899999999 999999999999999999998789999999976 45899999998
Q ss_pred cccEEEEEeCCCC
Q 015217 102 GFPTIKVFVPGKP 114 (411)
Q Consensus 102 ~~P~~~~~~~g~~ 114 (411)
++||+++|..|+.
T Consensus 90 ~iPT~~~~~~~~~ 102 (119)
T cd02952 90 GVPTLLRWKTPQR 102 (119)
T ss_pred CCCEEEEEcCCce
Confidence 9999999977654
No 127
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.35 E-value=6.9e-12 Score=95.75 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccc--cccEEEEEcCCCCCcccccCC-CC
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ--GFPTILVFGADKDSPIPYEGA-RT 254 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~--~~P~i~~~~~~~~~~~~y~g~-~~ 254 (411)
..++++.|+++||++|+.+.+.+.++|+++++++.|+.+|++..+.+++.||+. ++|++++++.+....+.+.+. .+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 578999999999999999999999999999999999999999999999999999 999999998743224445544 58
Q ss_pred HHHHHHHHHHH
Q 015217 255 AGAIESFALEQ 265 (411)
Q Consensus 255 ~~~i~~fi~~~ 265 (411)
.++|.+|+.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 128
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.34 E-value=8.3e-12 Score=119.67 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=74.0
Q ss_pred HhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEE----------------------------eccccHhH
Q 015217 44 VLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAAL----------------------------DANEHQSL 94 (411)
Q Consensus 44 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~v----------------------------d~~~~~~~ 94 (411)
.+.++++++|.|||+||++|+...|.++++++.++. .+.++.| +++.+..+
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 345889999999999999999999999999998873 4544433 34556689
Q ss_pred HHhcCCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHH
Q 015217 95 AQEYGIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 95 ~~~~~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~ 133 (411)
++.|+|.++|+++++ ++|+.+.++.|..+.+.|..+++.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999999999777 467767889999999988888873
No 129
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.34 E-value=1.7e-11 Score=99.37 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=64.2
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc------------HhHH-Hhc---CCCcccEEEE
Q 015217 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH------------QSLA-QEY---GIRGFPTIKV 108 (411)
Q Consensus 45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~------------~~~~-~~~---~i~~~P~~~~ 108 (411)
...++..+|+||++||++|++..|.++++++.++ +.+..|+.+.. .... ..+ ++.++|+.++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 3456778999999999999999999999999874 44545555432 2333 345 7899999999
Q ss_pred EeC-CCC-CcccCCCCCcchhHHHHHH
Q 015217 109 FVP-GKP-PVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 109 ~~~-g~~-~~~~~g~~~~~~l~~~~~~ 133 (411)
++. |+. ...+.|..+.+.+.+.+.+
T Consensus 125 ID~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 125 VNVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EeCCCCEEEEEeecccCHHHHHHHHHH
Confidence 975 443 3367899998887776654
No 130
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.34 E-value=8.8e-12 Score=92.90 Aligned_cols=91 Identities=37% Similarity=0.671 Sum_probs=78.2
Q ss_pred chHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCccc
Q 015217 169 NFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP 248 (411)
Q Consensus 169 ~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~ 248 (411)
++.+.+ ...++++|.||++||+.|+.+.+.+.++++. .+.+.|+.+|++.+..++++|++.++|++++|..+. ....
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 345543 3448899999999999999999999999998 667999999999999999999999999999998765 3677
Q ss_pred ccCCCCHHHHHHHH
Q 015217 249 YEGARTAGAIESFA 262 (411)
Q Consensus 249 y~g~~~~~~i~~fi 262 (411)
+.|..+.+.|.+++
T Consensus 79 ~~g~~~~~~l~~~i 92 (93)
T cd02947 79 VVGADPKEELEEFL 92 (93)
T ss_pred EecCCCHHHHHHHh
Confidence 78888878888876
No 131
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.33 E-value=2e-10 Score=101.20 Aligned_cols=197 Identities=22% Similarity=0.321 Sum_probs=136.2
Q ss_pred CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhh------hH-HHHHHHHHhcC-CeEEEEEeCCCchhHHhhCcc
Q 015217 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL------AP-EWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNV 230 (411)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~------~~-~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v 230 (411)
...+..|+.++|.+.+ ......+|+|+.+--.. +.. .. .++-+|+.+.. .+.||.||...+..+++++|+
T Consensus 33 kDRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp S--CEEE-TTTHHHHH-HH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred ccceEEcchhHHHHHH-HhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence 3569999999999964 55667778888764211 222 23 33444555544 499999999999999999999
Q ss_pred ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcC---C-ccEEE-------eHHH
Q 015217 231 QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCG---S-AAICF-------YLEM 299 (411)
Q Consensus 231 ~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~---~-~~~~~-------~~~~ 299 (411)
...++|.+|+++. .+.|.|.++++.++.|+...+. .+|..+++...+..+.. . +-+.+ ..+.
T Consensus 111 ~E~~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~e-----dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~ 183 (383)
T PF01216_consen 111 EEEGSIYVFKDGE--VIEYDGERSADTLVEFLLDLLE-----DPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKE 183 (383)
T ss_dssp -STTEEEEEETTE--EEEE-S--SHHHHHHHHHHHHS-----SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHH
T ss_pred cccCcEEEEECCc--EEEecCccCHHHHHHHHHHhcc-----cchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHH
Confidence 9999999999876 8999999999999999999985 55888888777654433 2 22332 4589
Q ss_pred HHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCC-CCCChhHHHHHHHHHccC
Q 015217 300 LLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLK-SAFELEHIVEFVKEAGRG 371 (411)
Q Consensus 300 ~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~-~~~~~~~i~~fi~~~~~g 371 (411)
|..+|.+|... +.|+.+-. +.++++++++ .--+-+|.|--+...... .+.+.++|.+||++...-
T Consensus 184 FeeAAe~F~p~-IkFfAtfd---~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rp 249 (383)
T PF01216_consen 184 FEEAAEHFQPY-IKFFATFD---KKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRP 249 (383)
T ss_dssp HHHHHHHCTTT-SEEEEE-S---HHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-
T ss_pred HHHHHHhhcCc-eeEEEEec---chhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchh
Confidence 99999999988 88888876 9999999996 666788887766665444 458999999999998433
No 132
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.1e-11 Score=115.93 Aligned_cols=209 Identities=22% Similarity=0.356 Sum_probs=130.0
Q ss_pred CCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCC--CchhHHhhCccc
Q 015217 157 SDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCD--SEKSLMSKFNVQ 231 (411)
Q Consensus 157 ~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~--~~~~l~~~~~v~ 231 (411)
+...++..|+..+|...+..+++.++|.||++||++|+.+.|.|+++|+.... -+.++.|||. .+..+|++|+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 34589999999999999888888999999999999999999999999999876 4899999995 466899999999
Q ss_pred cccEEEEEcCCCCC---cccccCCCCHHHHHHHHHHHhhh------cCCCCCceEeCChhH---HHHhcCC-cc---EEE
Q 015217 232 GFPTILVFGADKDS---PIPYEGARTAGAIESFALEQLET------NVAPPEVTELTSQDV---MEEKCGS-AA---ICF 295 (411)
Q Consensus 232 ~~P~i~~~~~~~~~---~~~y~g~~~~~~i~~fi~~~~~~------~~~~~~v~~l~~~~~---~~~~~~~-~~---~~~ 295 (411)
.+|++.+|..+... ...+.|.....++.+.+.+.+.. ++.-|.+..+.+.+. +....+. .. +++
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~ 195 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVF 195 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEE
Confidence 99999999655321 23445555566666666554432 223343333444333 3322222 11 222
Q ss_pred ----eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHHc
Q 015217 296 ----YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEAG 369 (411)
Q Consensus 296 ----~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~~ 369 (411)
..--+..+-.....+.+....+-+ ......+++..+..|..++++ ++.....+....+-+...+-|.+++
T Consensus 196 e~~~s~lg~~~~l~~l~~~~v~vr~~~d---~q~~~~~~l~~~~~~~~llfr-nG~~q~l~~~~~s~~~y~~~I~~~l 269 (606)
T KOG1731|consen 196 ETEPSDLGWANLLNDLPSKQVGVRARLD---TQNFPLFGLKPDNFPLALLFR-NGEQQPLWPSSSSRSAYVKKIDDLL 269 (606)
T ss_pred ecCCcccHHHHHHhhccCCCcceEEEec---chhccccccCCCCchhhhhhc-CCcccccccccccHHHHHHHHHHHh
Confidence 112333333333222233333322 222223445555688888886 3333334444455545555555554
No 133
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.32 E-value=1.5e-11 Score=97.39 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=76.8
Q ss_pred hcCC-CeEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCeEEEEEeCCCc-------------hhHHhhCccccccEEE
Q 015217 175 LKSK-DLWIVEFFAPWCGHCKKLAPEWK---KAANNLKGKVKLGHVDCDSE-------------KSLMSKFNVQGFPTIL 237 (411)
Q Consensus 175 ~~~~-~~~lv~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~f~~v~~~~~-------------~~l~~~~~v~~~P~i~ 237 (411)
.+.+ ++++|.||++||++|+.+.+.+. .+...+.+++.+..+|.+.+ ..++.+|++.++|+++
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 4556 89999999999999999999884 67777777788888988754 6899999999999999
Q ss_pred EEcCC-CCCcccccCCCCHHHHHHHHHHHh
Q 015217 238 VFGAD-KDSPIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 238 ~~~~~-~~~~~~y~g~~~~~~i~~fi~~~~ 266 (411)
+|.++ ++...++.|..+.+.+..++....
T Consensus 90 ~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 90 FLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred EEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 99876 566778889888888888877654
No 134
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.31 E-value=9e-12 Score=96.74 Aligned_cols=92 Identities=17% Similarity=0.364 Sum_probs=67.8
Q ss_pred HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-hHHHhcCCCc--ccEEEEEe-CCCCCc--
Q 015217 43 KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-SLAQEYGIRG--FPTIKVFV-PGKPPV-- 116 (411)
Q Consensus 43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~--~P~~~~~~-~g~~~~-- 116 (411)
.+..++++++|.||++||++|+.+.|.+.+..........|+.+|.+.+. .....|++.+ +|+++++. +|+.+.
T Consensus 14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhh
Confidence 55678999999999999999999999998876654444456666666554 4567889886 99999996 676644
Q ss_pred -ccCCCCCcchhHHHHHHH
Q 015217 117 -DYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 117 -~~~g~~~~~~l~~~~~~~ 134 (411)
...|..+.+.+.+.+...
T Consensus 94 ~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 94 INKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred ccCCCCccccccCCCHHHH
Confidence 456666666655555443
No 135
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.31 E-value=1.4e-11 Score=96.35 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=76.1
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----------hHHhhC
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----------SLMSKF 228 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----------~l~~~~ 228 (411)
..+..++..++.+. ..+++..+|+|+++|||+|+.+.|.+.++++. .+..++.||.+.++ ++.++|
T Consensus 6 ~~~~~it~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 6 KGLEVTTVVRALEA-LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ccceecCHHHHHHH-HHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 45677888888885 46677789999999999999999999999998 34567777766432 455666
Q ss_pred cc----ccccEEEEEcCCCCCcccccC-CCCHHHHHHHH
Q 015217 229 NV----QGFPTILVFGADKDSPIPYEG-ARTAGAIESFA 262 (411)
Q Consensus 229 ~v----~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi 262 (411)
++ .++|++++|++|.. ..+..| ..+.++|.+|+
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHh
Confidence 64 45999999998764 455667 45688888875
No 136
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.31 E-value=4.2e-11 Score=100.77 Aligned_cols=103 Identities=17% Similarity=0.315 Sum_probs=81.8
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc------------------
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE------------------ 90 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~------------------ 90 (411)
..+..++++.+. ...-++++++|.||++||++|+...+.+.++++.+.+ .+.++.|+++.
T Consensus 44 ~~~~~~~g~~~~-l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 44 FVLTDLEGKKIE-LKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred cEeecCCCCEEe-HHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 344556666665 3334678999999999999999999999999999876 48888888753
Q ss_pred ----cHhHHHhcCCCcccEEEEEeC-CCCCcccCCCCCcchhHHHHHH
Q 015217 91 ----HQSLAQEYGIRGFPTIKVFVP-GKPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 91 ----~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~~ 133 (411)
...++++||+.++|+++++.. |+....+.|..+.+.+.+++.+
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 357889999999999988864 5545578899998888888764
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=99.28 E-value=1.2e-10 Score=98.50 Aligned_cols=158 Identities=11% Similarity=0.119 Sum_probs=105.9
Q ss_pred CccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCC
Q 015217 166 NSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDS 245 (411)
Q Consensus 166 ~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~ 245 (411)
+.+++.+.+..+.+..+++|+++||++|+.+.+.+.++++.+. .+.|+.||.+ |+|..+|++++|+++..
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~- 74 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQL- 74 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEE-
Confidence 3456666554334778999999999999999999999999996 5999999865 99999999999998764
Q ss_pred cccccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEEeH---------HHHHHHHHHhhcCccEEEE
Q 015217 246 PIPYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICFYL---------EMLLSVAEKFKRGHYSFVW 316 (411)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~f~~ 316 (411)
.-++.| .+...+..++.++...... . .....++.+...++++++. ..-+++-.-+++..+.|..
T Consensus 75 i~r~~G-~~~~~~~~~~~~~~~~~~~----~--~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~ 147 (204)
T PTZ00062 75 INSLEG-CNTSTLVSFIRGWAQKGSS----E--DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYET 147 (204)
T ss_pred EeeeeC-CCHHHHHHHHHHHcCCCCH----H--HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEE
Confidence 556666 4678999999877642211 1 1123455556666655532 2333333334443466666
Q ss_pred ecCCCchhhHHHh----CCCCCCCCeEEEe
Q 015217 317 AAAGKQPDLENRV----GVGGYGYPALVAL 342 (411)
Q Consensus 317 i~~~~~~~~~~~f----~~~~~~~P~l~v~ 342 (411)
+|-.+.++..+.+ |-. .+|.++|=
T Consensus 148 ~DI~~d~~~~~~l~~~sg~~--TvPqVfI~ 175 (204)
T PTZ00062 148 YNIFEDPDLREELKVYSNWP--TYPQLYVN 175 (204)
T ss_pred EEcCCCHHHHHHHHHHhCCC--CCCeEEEC
Confidence 6655555443333 332 47888873
No 138
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.25 E-value=5.9e-11 Score=86.42 Aligned_cols=80 Identities=15% Similarity=0.281 Sum_probs=70.6
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHH
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIES 260 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~ 260 (411)
.+..|+++||++|+.+.+.+.+++..++..+.+..||.+.+++++++||+..+|++++ ++. .++.|..+.+.+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l~~ 76 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEELVE 76 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHHHH
Confidence 4778999999999999999999999998889999999999999999999999999986 332 47889888999988
Q ss_pred HHHHH
Q 015217 261 FALEQ 265 (411)
Q Consensus 261 fi~~~ 265 (411)
++.+.
T Consensus 77 ~l~~~ 81 (82)
T TIGR00411 77 AIKKR 81 (82)
T ss_pred HHHhh
Confidence 87654
No 139
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.24 E-value=1.2e-10 Score=98.24 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=82.1
Q ss_pred CCCCcEEeCccchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217 158 DSNESIELNSSNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~ 235 (411)
.-..+..++..+|...+.... .+++|.||++||++|+.+.+.|.++|..+. .+.|+.|+.+. ...+|++..+||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~---~~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ---CIPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH---hHhhCCCCCCCE
Confidence 357789999999998776553 489999999999999999999999999986 59999999764 368999999999
Q ss_pred EEEEcCCCCCcccccC-------CCCHHHHHHHHHH
Q 015217 236 ILVFGADKDSPIPYEG-------ARTAGAIESFALE 264 (411)
Q Consensus 236 i~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~ 264 (411)
+++|++|.. ...+.| .++.++|..++.+
T Consensus 156 lliyk~G~~-v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGDI-VKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCEE-EEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999998753 333433 4566777766654
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.23 E-value=1.2e-11 Score=96.09 Aligned_cols=86 Identities=27% Similarity=0.427 Sum_probs=64.7
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhCCCeEEEEEecccc--------------------HhHHHhcCCCc
Q 015217 46 NANGVVLVEFYAPWCGHCQALTPIWEK---AATVLKGVATVAALDANEH--------------------QSLAQEYGIRG 102 (411)
Q Consensus 46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~~~i~~~~vd~~~~--------------------~~~~~~~~i~~ 102 (411)
.++++.+++||++||++|+.+.+.+.+ +...+++++.++.++++.. .++.+.+||++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 468899999999999999999999885 4445555677888877643 35899999999
Q ss_pred ccEEEEEe-CCCCCcccCCCCCcchhHHHH
Q 015217 103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~ 131 (411)
+|+++++. +|+.+.++.|..+++.|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999996 577677889999999887764
No 141
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.20 E-value=1.1e-10 Score=90.94 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=72.2
Q ss_pred eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEeccccHhHHHh--------cCCCcc
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDANEHQSLAQE--------YGIRGF 103 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~~~~~~~~~--------~~i~~~ 103 (411)
.+++.+. .+.+++++++|.|+++||+.|+.+.+. + .+++..+..++.++.+|.++.+++++. ||+.++
T Consensus 3 ~~~eal~-~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 3 WGEEAFE-KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred CCHHHHH-HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 3455566 677889999999999999999999874 3 467777777889999999988777653 589999
Q ss_pred cEEEEEeC-CCCCcccCCC-----CCcchhHHHHHHH
Q 015217 104 PTIKVFVP-GKPPVDYQGA-----RDVKPIAEFALQQ 134 (411)
Q Consensus 104 P~~~~~~~-g~~~~~~~g~-----~~~~~l~~~~~~~ 134 (411)
|+++++.. |+.+....+. .+...+.+++.+.
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 99999965 5544333222 3334566666543
No 142
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.17 E-value=3.6e-10 Score=111.77 Aligned_cols=102 Identities=20% Similarity=0.377 Sum_probs=79.7
Q ss_pred cEEeC-ccchhHHH---hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecccc----HhHHHhcCC
Q 015217 32 VVQLT-PNNFKSKV---LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEH----QSLAQEYGI 100 (411)
Q Consensus 32 ~~~l~-~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i 100 (411)
.+.++ .+++++.+ ..++++++|+||++||++|+.+++.. .++.+.++ ++.++++|++++ .+++++|++
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v 532 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNV 532 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCC
Confidence 44443 34555333 24578999999999999999998875 66777775 478999999853 689999999
Q ss_pred CcccEEEEEe-CCCC--CcccCCCCCcchhHHHHHHH
Q 015217 101 RGFPTIKVFV-PGKP--PVDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 101 ~~~P~~~~~~-~g~~--~~~~~g~~~~~~l~~~~~~~ 134 (411)
.++|++++|+ +|+. ..++.|..+.+++.+++++.
T Consensus 533 ~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 9999999997 5665 36788999999998888753
No 143
>PHA02125 thioredoxin-like protein
Probab=99.17 E-value=8.9e-11 Score=83.53 Aligned_cols=61 Identities=25% Similarity=0.513 Sum_probs=51.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGA 121 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~ 121 (411)
+++||++||++|+.+.|.++++. +.++.||+++.++++++|+|.++|+++ .|+.+.++.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 78999999999999999997653 467899999999999999999999986 45545567674
No 144
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.16 E-value=2.8e-10 Score=87.65 Aligned_cols=77 Identities=18% Similarity=0.378 Sum_probs=65.1
Q ss_pred ccchHHHHhcC-CCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------chhHHhhCccc
Q 015217 167 SSNFDELVLKS-KDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-------EKSLMSKFNVQ 231 (411)
Q Consensus 167 ~~~~~~~~~~~-~~~~lv~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-------~~~l~~~~~v~ 231 (411)
..+|.+.+... +++++|.|++ +||++|+.+.|.+++++..+.+++.|+.||.+. +..++.+++|.
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~ 88 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT 88 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc
Confidence 34566655443 5799999999 999999999999999999998789999999875 45899999998
Q ss_pred -cccEEEEEcCCC
Q 015217 232 -GFPTILVFGADK 243 (411)
Q Consensus 232 -~~P~i~~~~~~~ 243 (411)
++||+++|+.+.
T Consensus 89 ~~iPT~~~~~~~~ 101 (119)
T cd02952 89 TGVPTLLRWKTPQ 101 (119)
T ss_pred cCCCEEEEEcCCc
Confidence 999999996543
No 145
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-10 Score=97.17 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=82.2
Q ss_pred CccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCC
Q 015217 166 NSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKD 244 (411)
Q Consensus 166 ~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~ 244 (411)
++.+|...+... .+.++|.|++.||++|+.+.|.|..++.+|. ...|..||++.....+..+||+..||+++|+++..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 446677665444 3599999999999999999999999999996 48999999999999999999999999999998764
Q ss_pred CcccccCCCCHHHHHHHHHHHhh
Q 015217 245 SPIPYEGARTAGAIESFALEQLE 267 (411)
Q Consensus 245 ~~~~y~g~~~~~~i~~fi~~~~~ 267 (411)
.-.+.| .+...|.+-+.++..
T Consensus 87 -id~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 87 -IDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred -eeeecC-CCHHHHHHHHHHHhc
Confidence 566777 456677777777654
No 146
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.16 E-value=1.2e-10 Score=82.98 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=57.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCC-CcchhHHH
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGAR-DVKPIAEF 130 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~-~~~~l~~~ 130 (411)
-|.||++||++|+.+.|.++++++.+...+.+..+| +.+.+.+||+.++|++++ +|+.+ +.|.. +.+.+.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998888888887 344578899999999888 67643 66643 33555544
No 147
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.11 E-value=7.8e-10 Score=92.72 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=68.5
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec-----------------------cccHhHHHhcCCCc
Q 015217 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA-----------------------NEHQSLAQEYGIRG 102 (411)
Q Consensus 46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~-----------------------~~~~~~~~~~~i~~ 102 (411)
.++++++|+||++||++|+++.|.+.++.+. ++.+..|+. +.+..+.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 4689999999999999999999999888753 344544443 33446778899999
Q ss_pred ccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217 103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
+|+.+++. +|+...++.|..+.+.+.+++.+.+
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 99777774 6766777889999999999888765
No 148
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-09 Score=84.59 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=74.4
Q ss_pred HHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccc----------------cHhHHHhcCCCcc
Q 015217 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANE----------------HQSLAQEYGIRGF 103 (411)
Q Consensus 43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~----------------~~~~~~~~~i~~~ 103 (411)
.+...++..+++|-+++|..|.++...+ .++.+.+.+++.++.++... ..+|++.|+++++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 5566889999999999999999999977 55777778888998888752 2489999999999
Q ss_pred cEEEEEeC-CCCCcccCCCCCcchhHHHHH
Q 015217 104 PTIKVFVP-GKPPVDYQGARDVKPIAEFAL 132 (411)
Q Consensus 104 P~~~~~~~-g~~~~~~~g~~~~~~l~~~~~ 132 (411)
|++++|+. |+.+..-+|...++.+..-+.
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999976 455778899999997765554
No 149
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.08 E-value=6e-10 Score=88.50 Aligned_cols=79 Identities=15% Similarity=0.310 Sum_probs=62.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-----------------------ccccHhHHHhcCCCcc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-----------------------ANEHQSLAQEYGIRGF 103 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-----------------------~~~~~~~~~~~~i~~~ 103 (411)
++++++|+||++||++|+...|.+.++.+.+. +.++.|+ ++....+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 58899999999999999999999999987752 5555554 3455678889999999
Q ss_pred cEEEEEe-CCCCCcccCCCCCcchh
Q 015217 104 PTIKVFV-PGKPPVDYQGARDVKPI 127 (411)
Q Consensus 104 P~~~~~~-~g~~~~~~~g~~~~~~l 127 (411)
|+.+++. +|+...++.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 9777775 67667788888876543
No 150
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.08 E-value=6.3e-10 Score=89.08 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=55.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEecccc-------------------------Hh
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG--------VATVAALDANEH-------------------------QS 93 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~i~~~~vd~~~~-------------------------~~ 93 (411)
++++++|+|||+||++|+++.|.+.++.+.+++ ++.++.|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 689999999999999999999999998876543 477777776532 15
Q ss_pred HHHhcCCCcccEEEEEeCCCC
Q 015217 94 LAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 94 ~~~~~~i~~~P~~~~~~~g~~ 114 (411)
++++|++.++|+++++...+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 788899999999999975433
No 151
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.08 E-value=8.5e-10 Score=82.73 Aligned_cols=66 Identities=27% Similarity=0.554 Sum_probs=55.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEeccccH-------------------------hHHHhcCC
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLK--GVATVAALDANEHQ-------------------------SLAQEYGI 100 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~i~~~~vd~~~~~-------------------------~~~~~~~i 100 (411)
+++++|+||++||++|++..|.+.++.+.++ +++.++.|.++++. .+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 67888888887542 67888999
Q ss_pred CcccEEEEEeCCC
Q 015217 101 RGFPTIKVFVPGK 113 (411)
Q Consensus 101 ~~~P~~~~~~~g~ 113 (411)
.++|+++++...+
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 9999999997643
No 152
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.05 E-value=1.1e-09 Score=87.43 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=55.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecccc------------------------HhHHHhcC
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH------------------------QSLAQEYG 99 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~------------------------~~~~~~~~ 99 (411)
++++++|+||++||++|+...|.+.++.+.+.+ ++.++.|+.+.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 678999999999999999999999999888763 455666655532 35788999
Q ss_pred CCcccEEEEEeCCCC
Q 015217 100 IRGFPTIKVFVPGKP 114 (411)
Q Consensus 100 i~~~P~~~~~~~g~~ 114 (411)
+.++|++++++.++.
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999974433
No 153
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.05 E-value=3.8e-09 Score=87.15 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=64.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-------------HhHHHhcCC--CcccEEEEEeCCCCC-
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-------------QSLAQEYGI--RGFPTIKVFVPGKPP- 115 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-------------~~~~~~~~i--~~~P~~~~~~~g~~~- 115 (411)
+|.||++||++|+++.|.+.++++.++ +.+..|+.+.. ..+...||+ .++|+.++++..+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999974 55555555422 236678885 699999999654443
Q ss_pred -cccCCCCCcchhHHHHHHHHH
Q 015217 116 -VDYQGARDVKPIAEFALQQIK 136 (411)
Q Consensus 116 -~~~~g~~~~~~l~~~~~~~~~ 136 (411)
..+.|..+.+.+.+.+.+.+.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 368999999988888877663
No 154
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.03 E-value=8.2e-10 Score=85.75 Aligned_cols=84 Identities=19% Similarity=0.358 Sum_probs=59.3
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-hHHhhCcccc--ccEEEEEcCCCCCcc---
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-SLMSKFNVQG--FPTILVFGADKDSPI--- 247 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-~l~~~~~v~~--~P~i~~~~~~~~~~~--- 247 (411)
....+++++|.|+++||++|+.+.+.+.+.+........|..++.+.++ ...+.|++.+ +|++++|..+++...
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhc
Confidence 4556789999999999999999999999987755444455556655443 4567888876 999999975554332
Q ss_pred cccCCCCHHH
Q 015217 248 PYEGARTAGA 257 (411)
Q Consensus 248 ~y~g~~~~~~ 257 (411)
...|..+.+.
T Consensus 95 ~~~~~~~~~~ 104 (117)
T cd02959 95 NKKGNPNYKY 104 (117)
T ss_pred cCCCCccccc
Confidence 3444444433
No 155
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.02 E-value=1.2e-09 Score=97.66 Aligned_cols=86 Identities=19% Similarity=0.215 Sum_probs=69.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-----------cHhHHHhcCCCcccEEEEEeC-CCC
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-----------HQSLAQEYGIRGFPTIKVFVP-GKP 114 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-----------~~~~~~~~~i~~~P~~~~~~~-g~~ 114 (411)
.++++||+||++||++|+.+.|.+..+++.+. +.+..|+.+. +..+++++||.++|+++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 57899999999999999999999999999885 4454555543 357899999999999999987 444
Q ss_pred Cc-ccCCCCCcchhHHHHHHH
Q 015217 115 PV-DYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 115 ~~-~~~g~~~~~~l~~~~~~~ 134 (411)
+. ...|..+.+.|.+.+...
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 33 456888988888887654
No 156
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.02 E-value=1.7e-09 Score=85.32 Aligned_cols=94 Identities=23% Similarity=0.361 Sum_probs=69.6
Q ss_pred EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe---------------------cccc
Q 015217 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD---------------------ANEH 91 (411)
Q Consensus 33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd---------------------~~~~ 91 (411)
..++++.+. ....++++++|.||++||++|+.+.|.+.++++.+. .+.+ .+| ++.+
T Consensus 6 ~~~~g~~~~-~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 6 TTLDGEQFD-LESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSV-ALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred ecCCCCEee-HHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEE-EccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 345555555 333456899999999999999999999999887742 1222 111 2345
Q ss_pred HhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHH
Q 015217 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAE 129 (411)
Q Consensus 92 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~ 129 (411)
.+++++|++.++|+++++.+++...++.|..+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 67999999999999999987666667888888877654
No 157
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.01 E-value=2.7e-09 Score=82.84 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=78.0
Q ss_pred HHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeC--CCCC
Q 015217 43 KVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVP--GKPP 115 (411)
Q Consensus 43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~--g~~~ 115 (411)
....++++++|+|+++||+.|+.+... | ..+.+.+..+..+..+|.+ +..+++..|++.++|+++++.. |+.+
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 456679999999999999999999874 4 5677777777888888887 4568999999999999999965 6668
Q ss_pred cccCCCCCcchhHHHHHHHH
Q 015217 116 VDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 116 ~~~~g~~~~~~l~~~~~~~~ 135 (411)
.+..|..+++.+...+.+.+
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 89999999999888887654
No 158
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.00 E-value=1.8e-09 Score=86.36 Aligned_cols=68 Identities=25% Similarity=0.469 Sum_probs=55.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEecccc-------------------------HhHHHhc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG---VATVAALDANEH-------------------------QSLAQEY 98 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~~~-------------------------~~~~~~~ 98 (411)
++++++|.||++||++|+...|.+.++.+.+++ ++.+..|+++.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 589999999999999999999999999988875 466666766543 2456779
Q ss_pred CCCcccEEEEEeCCCC
Q 015217 99 GIRGFPTIKVFVPGKP 114 (411)
Q Consensus 99 ~i~~~P~~~~~~~g~~ 114 (411)
++.++|++++++.++.
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999975443
No 159
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.99 E-value=2.3e-09 Score=83.21 Aligned_cols=85 Identities=31% Similarity=0.499 Sum_probs=67.9
Q ss_pred eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEecccc----------------------
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEH---------------------- 91 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~~---------------------- 91 (411)
++.+.+. .....+++++|.||++||++|+...+.+.++.+.+. ..+.++.|+++..
T Consensus 7 ~~g~~~~-~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 7 LDGKPVS-LSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CCCCEee-hHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 4444455 233348899999999999999999999999999986 3689999999875
Q ss_pred -HhHHHhcCCCcccEEEEEeC-CCCCcccCC
Q 015217 92 -QSLAQEYGIRGFPTIKVFVP-GKPPVDYQG 120 (411)
Q Consensus 92 -~~~~~~~~i~~~P~~~~~~~-g~~~~~~~g 120 (411)
..+++.|++.++|+++++.+ |+.+.+|.|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 78899999999999999964 544555544
No 160
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.98 E-value=2.1e-09 Score=74.82 Aligned_cols=57 Identities=26% Similarity=0.445 Sum_probs=51.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
-++.|+++||++|+.+.+.+++++... +++.+..+|.++++++++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 478999999999999999999997753 469999999999999999999999999865
No 161
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.98 E-value=6.5e-09 Score=86.34 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEE------EEEeccc-----------------------------c
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATV------AALDANE-----------------------------H 91 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~------~~vd~~~-----------------------------~ 91 (411)
.+++++|.|||.||++|+..+|.+..+... ++.+ ..||.++ .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 599999999999999999999999999643 2333 5555543 2
Q ss_pred HhHHHhcCCCcccEE-EEEe-CCCCCcccCCCCCcchhHH
Q 015217 92 QSLAQEYGIRGFPTI-KVFV-PGKPPVDYQGARDVKPIAE 129 (411)
Q Consensus 92 ~~~~~~~~i~~~P~~-~~~~-~g~~~~~~~g~~~~~~l~~ 129 (411)
..+...||+.+.|+. ++++ +|+....+.|..+.+.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 245678899999877 5664 4666778899998887766
No 162
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.6e-09 Score=87.75 Aligned_cols=99 Identities=17% Similarity=0.359 Sum_probs=80.9
Q ss_pred cccccCCCCCcEEe-CccchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhc
Q 015217 22 SDALYGSSSPVVQL-TPNNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEY 98 (411)
Q Consensus 22 ~~~~~~~~~~~~~l-~~~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~ 98 (411)
....+.++..+.-+ +.+.++.+.. ++...|+|.|++.|.+.|+++.|.+.++..++.. .+.||+||..+-++.+++|
T Consensus 116 ~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf 195 (265)
T KOG0914|consen 116 PEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF 195 (265)
T ss_pred CccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe
Confidence 34466777778888 4455553332 2445899999999999999999999999999985 6999999999999999999
Q ss_pred CCC------cccEEEEEeCCCCCcccCC
Q 015217 99 GIR------GFPTIKVFVPGKPPVDYQG 120 (411)
Q Consensus 99 ~i~------~~P~~~~~~~g~~~~~~~g 120 (411)
+|. ..||+++|.+|+++.|.+.
T Consensus 196 ris~s~~srQLPT~ilFq~gkE~~RrP~ 223 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILFQKGKEVSRRPD 223 (265)
T ss_pred eeccCcccccCCeEEEEccchhhhcCcc
Confidence 885 7799999999988766653
No 163
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.97 E-value=4.4e-09 Score=81.82 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=87.3
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
...++..+++ ......+..+++|...- ++.+....-.+.++++.+.+ ++.+++||++.+++++.+|||.++||+++
T Consensus 19 ~~~~~~~~~~-~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 19 WTPVSESRLD-DWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CCccccccHH-HHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 3455666777 45566666777666553 77888888899999999985 59999999999999999999999999999
Q ss_pred EeCCCCCcccCCCCCcchhHHHHHHHH
Q 015217 109 FVPGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 109 ~~~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
|++|+.+.+..|..+.+.+.+++.+.+
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence 999999889999999999999998876
No 164
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.94 E-value=1.6e-09 Score=83.96 Aligned_cols=87 Identities=28% Similarity=0.440 Sum_probs=63.3
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHH---HHHHhcCCeEEEEEeCCCc--------------------hhHHhhCcccc
Q 015217 176 KSKDLWIVEFFAPWCGHCKKLAPEWKK---AANNLKGKVKLGHVDCDSE--------------------KSLMSKFNVQG 232 (411)
Q Consensus 176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~---~a~~~~~~~~f~~v~~~~~--------------------~~l~~~~~v~~ 232 (411)
.++++.+++|+++||++|+.+.+.+.. +...++.++.+..++++.. ..+++++||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 356789999999999999999998874 5555655677887776643 35889999999
Q ss_pred ccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217 233 FPTILVFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
+|+++++..+++....+.|..+.+++.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999975555456788999998887764
No 165
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.89 E-value=7.8e-09 Score=73.59 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=57.4
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCC-CCHHHHHHH
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGA-RTAGAIESF 261 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~-~~~~~i~~f 261 (411)
|.||++||++|+.+.+.++++++++..++.+..+| +...+.+||+.++|++++ +|. .. +.|. .+.+.+.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~--~~-~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE--LV-IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE--EE-EEeccCCHHHHHHH
Confidence 67899999999999999999999998888888887 344578899999999999 333 22 6774 344666665
Q ss_pred H
Q 015217 262 A 262 (411)
Q Consensus 262 i 262 (411)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 4
No 166
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.88 E-value=8.1e-09 Score=75.71 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=62.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcch
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP 126 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~ 126 (411)
.++.-+..|+++||++|....+.+.+++..+. ++.+..+|.+..++++++|||.++|++++ +|+. .+.|..+.+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~--~~~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL--FGFGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE--EEeCCCCHHH
Confidence 56678999999999999999999999998764 68999999999999999999999999865 6653 3456554443
No 167
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.87 E-value=1.5e-07 Score=93.09 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=133.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcch
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP 126 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~ 126 (411)
.+++-+.++...|..|.++...+++++..- ++|.+...+.. ...|++.+..+|+. -++|.|-....+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 85 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHE 85 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHH
Confidence 444444444448999999999999888864 56665432211 34799989876644 589999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 015217 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205 (411)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~ 205 (411)
+..|+...+. ...+-..|++..... +.. +.+..+-.|.++.|++|......+.+++.
T Consensus 86 f~s~i~~i~~---------------------~~~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~ 143 (517)
T PRK15317 86 FTSLVLALLQ---------------------VGGHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAV 143 (517)
T ss_pred HHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 9999987763 233445565554444 333 34567889999999999999999999998
Q ss_pred HhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 206 ~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
.. .++.+-.+|....++++++|++.++|++++ ++ ...+.|..+.+++.+.+.+.
T Consensus 144 ~~-~~i~~~~id~~~~~~~~~~~~v~~VP~~~i---~~--~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 144 LN-PNITHTMIDGALFQDEVEARNIMAVPTVFL---NG--EEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred hC-CCceEEEEEchhCHhHHHhcCCcccCEEEE---CC--cEEEecCCCHHHHHHHHhcc
Confidence 64 479999999999999999999999999986 22 34578888888888777653
No 168
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.86 E-value=1.8e-08 Score=90.07 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=69.4
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------chhHHhhCccccccEEEEEcC-CCCC
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-----------EKSLMSKFNVQGFPTILVFGA-DKDS 245 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-----------~~~l~~~~~v~~~P~i~~~~~-~~~~ 245 (411)
+++.+|.||++||++|+...|.+.++++.+. +.+..|+.+. +..++++|||..+|+++++.. ++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 5689999999999999999999999999986 4454455443 356899999999999999987 3432
Q ss_pred cccccCCCCHHHHHHHHHHHh
Q 015217 246 PIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 246 ~~~y~g~~~~~~i~~fi~~~~ 266 (411)
.....|..+.+.|.+.+....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 334568889999988887654
No 169
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=1.8e-08 Score=106.63 Aligned_cols=92 Identities=22% Similarity=0.353 Sum_probs=76.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEec---------------------------cccHhHHHhc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV-ATVAALDA---------------------------NEHQSLAQEY 98 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-i~~~~vd~---------------------------~~~~~~~~~~ 98 (411)
++++++|+|||+||++|+...|.++++.+.++++ +.++.|.+ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 6899999999999999999999999999999864 66666632 2234678899
Q ss_pred CCCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHHHHH
Q 015217 99 GIRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQIKAL 138 (411)
Q Consensus 99 ~i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~~~ 138 (411)
++.++|+++++ ++|+.+.++.|....+.+.+++...+.-.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 99999999999 46777778899888888888888776543
No 170
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.85 E-value=1.5e-08 Score=96.56 Aligned_cols=100 Identities=21% Similarity=0.380 Sum_probs=77.2
Q ss_pred EEeCcc-chhHHHhcCCC--eEEEEEECCCChhhhhhhHHHH-H--HHHHhCCCeEEEEEecccc----HhHHHhcCCCc
Q 015217 33 VQLTPN-NFKSKVLNANG--VVLVEFYAPWCGHCQALTPIWE-K--AATVLKGVATVAALDANEH----QSLAQEYGIRG 102 (411)
Q Consensus 33 ~~l~~~-~f~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~-~--~~~~~~~~i~~~~vd~~~~----~~~~~~~~i~~ 102 (411)
+.++.. +.+ ....+++ +++++|||+||-.||.+++..- + +...+. ++...++|.+++ .++.++||+-+
T Consensus 457 q~~s~~~~L~-~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELD-QALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHH-HHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 566665 556 4444455 9999999999999999998553 3 333333 578889999854 47889999999
Q ss_pred ccEEEEEe-CCCCCcccCCCCCcchhHHHHHHH
Q 015217 103 FPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 103 ~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~ 134 (411)
.|++++|+ +|++.....|..+.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999998 566666689999999999998764
No 171
>smart00594 UAS UAS domain.
Probab=98.85 E-value=1.9e-08 Score=78.95 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=74.3
Q ss_pred cchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeCC
Q 015217 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVPG 112 (411)
Q Consensus 38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~g 112 (411)
++..+....++|+++|+|+++||..|+.+.... .++.+.++.++.+..+|.+ +..+++.+|++.++|+++++...
T Consensus 17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 333334566788999999999999999998854 5577777777888777776 45679999999999999999653
Q ss_pred C------CCcccCCCCCcchhHHHH
Q 015217 113 K------PPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 113 ~------~~~~~~g~~~~~~l~~~~ 131 (411)
. .+.+..|..+++.++.++
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHHHHhh
Confidence 2 266889999999888765
No 172
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.85 E-value=1.2e-08 Score=78.22 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=67.4
Q ss_pred eHHHHHHHHHH---hhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecCC-CccccCCCCCChhHHHHHHHHHccC
Q 015217 296 YLEMLLSVAEK---FKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVKK-GVYTPLKSAFELEHIVEFVKEAGRG 371 (411)
Q Consensus 296 ~~~~~~~~a~~---~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~~-~~~~~~~~~~~~~~i~~fi~~~~~g 371 (411)
+...++.+|++ |+++ +.|+++|.++....++.||++..+.|++++.+..+ .+|..+.+.++.++|++|+.++++|
T Consensus 32 ~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 32 LKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred HHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 45789999999 9998 99999999888789999999987899999998754 4775577899999999999999998
Q ss_pred C
Q 015217 372 G 372 (411)
Q Consensus 372 ~ 372 (411)
+
T Consensus 111 k 111 (111)
T cd03072 111 K 111 (111)
T ss_pred C
Confidence 5
No 173
>PHA02125 thioredoxin-like protein
Probab=98.85 E-value=1.3e-08 Score=72.41 Aligned_cols=50 Identities=30% Similarity=0.588 Sum_probs=45.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
++.|+++||++|+.+.+.+.+++ +.++.||.+...+++++|+|.++|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 78999999999999999997653 468889999999999999999999987
No 174
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.84 E-value=3.4e-08 Score=77.01 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=58.9
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCCCchhHHh--------hCccccccEEEEEcCC
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMS--------KFNVQGFPTILVFGAD 242 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~l~~--------~~~v~~~P~i~~~~~~ 242 (411)
..+.+++++|.|+++||+.|+.+.+ .| .+++..+..++.++.+|.+..+++++ .||+.++|+++++..+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 4677889999999999999999976 44 46777777789999999988777665 3588999999999876
Q ss_pred CC
Q 015217 243 KD 244 (411)
Q Consensus 243 ~~ 244 (411)
++
T Consensus 91 G~ 92 (124)
T cd02955 91 LK 92 (124)
T ss_pred CC
Confidence 64
No 175
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.83 E-value=1.5e-08 Score=70.36 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=51.7
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
.++.|+++||++|+.+.+.+.+++... .++.+..+|.+.++++++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 478899999999999999999998764 469999999999999999999999999876
No 176
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.83 E-value=1.7e-09 Score=90.30 Aligned_cols=107 Identities=30% Similarity=0.480 Sum_probs=93.8
Q ss_pred cccCCCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccHhHHHhcCCCc
Q 015217 24 ALYGSSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQSLAQEYGIRG 102 (411)
Q Consensus 24 ~~~~~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~ 102 (411)
.....+..+..++.++... . ..+-|+++|++|||+.|+...++|...+.--.+ .+.++.||...++.+.-+|-+..
T Consensus 18 ~~~~r~s~~~~~~eenw~~-~--l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta 94 (248)
T KOG0913|consen 18 VTPRRSSKLTRIDEENWKE-L--LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA 94 (248)
T ss_pred cCccccceeEEecccchhh-h--hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe
Confidence 3444556888999999994 3 367899999999999999999999999987666 68999999999999999999999
Q ss_pred ccEEEEEeCCCCCcccCCCCCcchhHHHHHHH
Q 015217 103 FPTIKVFVPGKPPVDYQGARDVKPIAEFALQQ 134 (411)
Q Consensus 103 ~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~ 134 (411)
.|+++-..+|. ..+|.|.++..+++.|+...
T Consensus 95 LptIYHvkDGe-FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 95 LPTIYHVKDGE-FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred cceEEEeeccc-cccccCcccchhHHHHHHhh
Confidence 99999989985 69999999999999998754
No 177
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.82 E-value=9.7e-09 Score=79.83 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=45.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE---eccccHhHHHhcCCCcccEE
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL---DANEHQSLAQEYGIRGFPTI 106 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v---d~~~~~~~~~~~~i~~~P~~ 106 (411)
++++++|.||++||++|+...|.+.++.+.+.+++.++.+ +.++..++++++++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 4789999999999999999999999999888766665555 22233456666666666654
No 178
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.82 E-value=5.5e-08 Score=75.71 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=87.1
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCC--CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAP--WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~--~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
....++..++..++ ......+++|-.+ .++.+....-++.++++.|.+ ++.|+.||.+.++.++.+|||.++||++
T Consensus 18 g~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 18 GWTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 35566677888864 5566666666643 467778888899999999985 5999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHHHHHHHHhhh
Q 015217 238 VFGADKDSPIPYEGARTAGAIESFALEQLET 268 (411)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~ 268 (411)
+|++|.. .-...|..+.+.+.++|.+.+..
T Consensus 97 ~FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 97 VFTGGNY-RGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEECCEE-EEEEeCcCCHHHHHHHHHHHhcC
Confidence 9998764 56778989999999999988753
No 179
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.81 E-value=3.5e-08 Score=97.77 Aligned_cols=104 Identities=21% Similarity=0.392 Sum_probs=80.0
Q ss_pred CcEEeC-ccchHHHHh---cCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----chhHHhhCc
Q 015217 161 ESIELN-SSNFDELVL---KSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----EKSLMSKFN 229 (411)
Q Consensus 161 ~v~~l~-~~~~~~~~~---~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----~~~l~~~~~ 229 (411)
....++ .+++.+.+. ..+++++|.||++||++|+.+.+.. .++.+.++ ++.+..+|.+. +.+++++|+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcC
Confidence 455554 345555443 2357999999999999999998864 67777776 58888999875 357899999
Q ss_pred cccccEEEEEcCCCCC--cccccCCCCHHHHHHHHHHH
Q 015217 230 VQGFPTILVFGADKDS--PIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 230 v~~~P~i~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~ 265 (411)
+.++|++++|+.+++. ..++.|..+.+++.+++.+.
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 9999999999755543 35778999999999888764
No 180
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.80 E-value=1.4e-08 Score=73.71 Aligned_cols=68 Identities=25% Similarity=0.421 Sum_probs=53.9
Q ss_pred HHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
.+.+++++++|+|+++||++|+.+...+ ..+.+.+.+++.++.+|.++........+ .++|+++++.+
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 5567899999999999999999999977 55666566789999999986665433222 67999999863
No 181
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.79 E-value=3.6e-08 Score=94.94 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=73.7
Q ss_pred hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEE----------------------------eCCCchhHH
Q 015217 175 LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHV----------------------------DCDSEKSLM 225 (411)
Q Consensus 175 ~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v----------------------------~~~~~~~l~ 225 (411)
....++++|.||++||++|+...|.+.++++.+.. .+.+..| .++.+..++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 34678999999999999999999999999999874 3555444 334456788
Q ss_pred hhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217 226 SKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 226 ~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (411)
+.|+|..+|+++++..++.....+.|..+.+.|..+|..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999999998887666656778899999999999873
No 182
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.79 E-value=2.7e-08 Score=77.43 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=53.2
Q ss_pred HHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC-CCCCccc
Q 015217 43 KVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP-GKPPVDY 118 (411)
Q Consensus 43 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~ 118 (411)
.+.+++++++|.||+.||++|+.+.... .++.+....++..+.++.+....-....| .++|+++|+.. |+.+.+.
T Consensus 18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccc
Confidence 5567899999999999999999999965 44566665555555666542211111234 68999999955 5555555
Q ss_pred CCCC
Q 015217 119 QGAR 122 (411)
Q Consensus 119 ~g~~ 122 (411)
.|..
T Consensus 97 ~Gy~ 100 (130)
T cd02960 97 TGRY 100 (130)
T ss_pred cccc
Confidence 5533
No 183
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.78 E-value=5.7e-08 Score=78.82 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc------------hhHH-hhC---ccccccEEEEEcC
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE------------KSLM-SKF---NVQGFPTILVFGA 241 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~------------~~l~-~~~---~v~~~P~i~~~~~ 241 (411)
.+..+|.||++||++|+...|.+.+++++++ +.+..|+.+.. .... ..| ++..+|+.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4556999999999999999999999999985 34444444321 2233 345 7889999999976
Q ss_pred CCCC-cccccCCCCHHHHHHHHHH
Q 015217 242 DKDS-PIPYEGARTAGAIESFALE 264 (411)
Q Consensus 242 ~~~~-~~~y~g~~~~~~i~~fi~~ 264 (411)
++.. ...+.|..+.+++.+.+.+
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHH
Confidence 5442 3357899998888877654
No 184
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.77 E-value=6.6e-08 Score=81.23 Aligned_cols=88 Identities=20% Similarity=0.397 Sum_probs=74.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC----------------------chhHHhhCccccc
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS----------------------EKSLMSKFNVQGF 233 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~----------------------~~~l~~~~~v~~~ 233 (411)
.+++++|.||++||+.|+...+.+.++++++.+. +.+..|+++. +..+++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4578999999999999999999999999999874 8888888653 3467899999999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHHHHHH
Q 015217 234 PTILVFGADKDSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~ 264 (411)
|+++++..++.....+.|..+.+++.+++.+
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 9999998777656678899999999888764
No 185
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.76 E-value=3.8e-08 Score=77.95 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=59.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---------------------------ccHhHHHhc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQEY 98 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---------------------------~~~~~~~~~ 98 (411)
++++++|.||++||++|.+..|.+.++.+.+++ .+.++.|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 679999999999999999999999999999985 5777777541 122567788
Q ss_pred CCCcccEEEEEe-CCCCCcccCCC
Q 015217 99 GIRGFPTIKVFV-PGKPPVDYQGA 121 (411)
Q Consensus 99 ~i~~~P~~~~~~-~g~~~~~~~g~ 121 (411)
++.++|+.++++ +|+....+.|+
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999995 46555555553
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.76 E-value=6.6e-07 Score=88.45 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=133.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcch
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP 126 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~ 126 (411)
+.+.++.|.. .|..|.++...+++++..- ++|.+...+.+. ...|++.++.+|+. -++|.|-....+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 4445555555 7999999999888888764 566664444321 34599988876653 589999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 015217 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205 (411)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~ 205 (411)
+..|+...+. ...+-..|+++.... +.. ..+..+-.|.++.|++|......+.+++.
T Consensus 87 f~s~i~~i~~---------------------~~~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~ 144 (515)
T TIGR03140 87 FTSLVLAILQ---------------------VGGHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMAL 144 (515)
T ss_pred HHHHHHHHHH---------------------hcCCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999988763 233345666655554 333 34567889999999999999999999998
Q ss_pred HhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 206 NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 206 ~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
... ++..-.+|....++++++|++.++|++++ ++ ...+.|..+.+.+.+.+.+.
T Consensus 145 ~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i---~~--~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 145 LNP-NISHTMIDGALFQDEVEALGIQGVPAVFL---NG--EEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred hCC-CceEEEEEchhCHHHHHhcCCcccCEEEE---CC--cEEEecCCCHHHHHHHHhhc
Confidence 855 68888899999999999999999999987 23 34577888888877666544
No 187
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.75 E-value=5.4e-08 Score=84.53 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=72.8
Q ss_pred EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c----HhHH-HhcC
Q 015217 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H----QSLA-QEYG 99 (411)
Q Consensus 33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~----~~~~-~~~~ 99 (411)
..++++.+. ...-++++++|.||++||+.|+...|.+.++.+.+++ .+.++.|+|+. . .+++ ++++
T Consensus 85 ~d~~G~~vs-Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g 163 (236)
T PLN02399 85 KDIDGKDVA-LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFK 163 (236)
T ss_pred ECCCCCEEe-HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcC
Confidence 344555444 2223579999999999999999999999999999986 48888888741 1 2332 2332
Q ss_pred C----------------------------------CcccEEEEEe-CCCCCcccCCCCCcchhHHHHHHHH
Q 015217 100 I----------------------------------RGFPTIKVFV-PGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 100 i----------------------------------~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
+ .+.|+.++++ +|+.+.+|.|..+.+.+.+.+.+.+
T Consensus 164 ~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 164 AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 1 2247777774 4666889999998888888877665
No 188
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.75 E-value=7.5e-08 Score=72.09 Aligned_cols=66 Identities=29% Similarity=0.633 Sum_probs=53.4
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCch-------------------------hHHhhCcc
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLK--GKVKLGHVDCDSEK-------------------------SLMSKFNV 230 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~-------------------------~l~~~~~v 230 (411)
+++++|.||++||++|+...+.+.++.+.+. +++.+..|+.+.+. .+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4689999999999999999999999999999 67999998877532 37777888
Q ss_pred ccccEEEEEcCCC
Q 015217 231 QGFPTILVFGADK 243 (411)
Q Consensus 231 ~~~P~i~~~~~~~ 243 (411)
..+|+++++..++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 8889988887654
No 189
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.71 E-value=1e-07 Score=81.50 Aligned_cols=104 Identities=11% Similarity=0.108 Sum_probs=72.8
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-----------ccHhHHHhcC
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLAQEYG 99 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-----------~~~~~~~~~~ 99 (411)
+..++++.+. ...-++++++|.||++||++|+...|.+.++.+.+++ .+.++.|+|+ +..+++++++
T Consensus 24 l~d~~G~~vs-L~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~ 102 (199)
T PTZ00056 24 VKTLEGTTVP-MSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK 102 (199)
T ss_pred EECCCCCEEe-HHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence 3344554444 2223588999999999999999999999999999986 5888899874 1234555555
Q ss_pred CC------------------------------------ccc---EEEEE-eCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217 100 IR------------------------------------GFP---TIKVF-VPGKPPVDYQGARDVKPIAEFALQQIK 136 (411)
Q Consensus 100 i~------------------------------------~~P---~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~~ 136 (411)
+. ++| +.+++ ++|+.+.++.|..+.+.+.+.+.+.+.
T Consensus 103 ~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 103 IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 41 112 34444 456667788888888888888877664
No 190
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.71 E-value=9.3e-08 Score=70.08 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (411)
++.-+..|+++||++|....+.+.+++..+. ++.+..+|.+..++++++|||.++|++++ + + ...+.|..+.++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--d-G--~~~~~G~~~~~e 85 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--N-G--ELFGFGRMTLEE 85 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--C-C--EEEEeCCCCHHH
Confidence 4567889999999999999999999998865 69999999999999999999999999975 2 3 244567655555
Q ss_pred H
Q 015217 258 I 258 (411)
Q Consensus 258 i 258 (411)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 191
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.70 E-value=2.7e-07 Score=78.45 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=54.0
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-------------c-----cccHhHHHhcCCCcccEEE
Q 015217 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-------------A-----NEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-------------~-----~~~~~~~~~~~i~~~P~~~ 107 (411)
.++++++|+||++||++|+...|.+.++.+....++.++..| . ....++++.|++.+.|+.+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 367899999999999999999999999887654344433311 0 0134678899999999988
Q ss_pred EEeCCCCCcccCCCC
Q 015217 108 VFVPGKPPVDYQGAR 122 (411)
Q Consensus 108 ~~~~g~~~~~~~g~~ 122 (411)
+++..+. +++.|..
T Consensus 152 lID~~G~-I~~~g~~ 165 (189)
T TIGR02661 152 LLDQDGK-IRAKGLT 165 (189)
T ss_pred EECCCCe-EEEccCC
Confidence 8765433 4455543
No 192
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.69 E-value=1.2e-07 Score=75.93 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=54.1
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--------CeEEEEEeCCCc-------------------------hh
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSE-------------------------KS 223 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~-------------------------~~ 223 (411)
.+++++|.|||+||++|+...|.+.++.+.+.+ .+.+..|+.+.+ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999998876653 367777765532 24
Q ss_pred HHhhCccccccEEEEEcCCC
Q 015217 224 LMSKFNVQGFPTILVFGADK 243 (411)
Q Consensus 224 l~~~~~v~~~P~i~~~~~~~ 243 (411)
++++|++.++|+.+++..++
T Consensus 104 l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCCCEEEEECCCC
Confidence 77788999999999998665
No 193
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.69 E-value=7.5e-08 Score=76.37 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=61.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-----------------------CCCchhHHhhCccccc
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-----------------------CDSEKSLMSKFNVQGF 233 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-----------------------~~~~~~l~~~~~v~~~ 233 (411)
.+++++|.||++||++|+...+.+.++++.++ +.+..|+ ++....+++.|++..+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36789999999999999999999999988863 5555444 3445568888999999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHH
Q 015217 234 PTILVFGADKDSPIPYEGARTAGA 257 (411)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~ 257 (411)
|+.+++..++.....+.|..+.+.
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHh
Confidence 988888766655667788777654
No 194
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.69 E-value=2.3e-07 Score=72.01 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=76.0
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCC--CchhHHhhCccccccEEEEEcC-CCCCcc
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCD--SEKSLMSKFNVQGFPTILVFGA-DKDSPI 247 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~--~~~~l~~~~~v~~~P~i~~~~~-~~~~~~ 247 (411)
....+++.+|+|+++||++|+.+.. .| .++.+.++.++.+..+|.+ +...++..|++.++|+++++.. ++....
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 3456789999999999999999976 45 6777777777778777775 3457889999999999999987 566677
Q ss_pred cccCCCCHHHHHHHHHHHh
Q 015217 248 PYEGARTAGAIESFALEQL 266 (411)
Q Consensus 248 ~y~g~~~~~~i~~fi~~~~ 266 (411)
+..|..+.+.+...+.+.+
T Consensus 93 ~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 93 VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 7889999999888887764
No 195
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.68 E-value=9.5e-08 Score=77.81 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=66.5
Q ss_pred eCccchhHHHhcCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEecccc---------------------
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANEH--------------------- 91 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~--------------------- 91 (411)
.+.+.+. ...-++++++|.||++ ||++|+...|.+.++.+.+++ .+.++.|..+.+
T Consensus 16 ~~g~~~~-l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~ 94 (146)
T PF08534_consen 16 LDGKPVS-LSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD 94 (146)
T ss_dssp TTSEEEE-GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred CCCCEec-HHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence 5555555 3335789999999999 999999999999999988665 477777766433
Q ss_pred HhHHHhcCCC---------cccEEEEEeC-CCCCcccCCCCC
Q 015217 92 QSLAQEYGIR---------GFPTIKVFVP-GKPPVDYQGARD 123 (411)
Q Consensus 92 ~~~~~~~~i~---------~~P~~~~~~~-g~~~~~~~g~~~ 123 (411)
..+.++|++. ++|+++++.. |+....+.|..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 3788899988 9999888865 544555555555
No 196
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.68 E-value=1.2e-07 Score=75.59 Aligned_cols=68 Identities=24% Similarity=0.543 Sum_probs=55.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCc------------------------hhHHhhCc
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE------------------------KSLMSKFN 229 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~------------------------~~l~~~~~ 229 (411)
.+++++|.||++||++|+...+.+.++.+.+++ .+.+..|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 457899999999999999999999999988864 366666665533 35778899
Q ss_pred cccccEEEEEcCCCC
Q 015217 230 VQGFPTILVFGADKD 244 (411)
Q Consensus 230 v~~~P~i~~~~~~~~ 244 (411)
+..+|+++++..+++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999976653
No 197
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.66 E-value=1.5e-07 Score=78.84 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=67.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC-----------------------CCchhHHhhCccccc
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-----------------------DSEKSLMSKFNVQGF 233 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-----------------------~~~~~l~~~~~v~~~ 233 (411)
.+++++|.||++||++|+...+.+.++++. .+.+..|+. +....+.+.|++.++
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 567999999999999999999999888764 244444442 333456778899999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217 234 PTILVFGADKDSPIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (411)
|+.+++..++.....+.|..+.+++.+++.+.+
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 988888766655667789999999999988875
No 198
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.64 E-value=2.7e-07 Score=78.17 Aligned_cols=88 Identities=14% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----------------------hHHhhCccccc
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----------------------SLMSKFNVQGF 233 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----------------------~l~~~~~v~~~ 233 (411)
..++++|.||++||++|+...|.+.++++. .+.+..|+.+++. .+...||+..+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 467899999999999999999999888653 4666667644322 24457889999
Q ss_pred cEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhh
Q 015217 234 PTILVFGADKDSPIPYEGARTAGAIESFALEQLE 267 (411)
Q Consensus 234 P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~ 267 (411)
|+.+++..++.....+.|..+.+.+.+.+...+.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999987667667788899999888888877653
No 199
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.63 E-value=2e-07 Score=74.41 Aligned_cols=67 Identities=27% Similarity=0.508 Sum_probs=54.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCc-------------------------hhHHhhC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG---KVKLGHVDCDSE-------------------------KSLMSKF 228 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~---~~~f~~v~~~~~-------------------------~~l~~~~ 228 (411)
.+++++|.||++||++|+...+.+.++++.+++ .+.+..|+.+.+ ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999999999999999999998876 366666665543 2456679
Q ss_pred ccccccEEEEEcCCC
Q 015217 229 NVQGFPTILVFGADK 243 (411)
Q Consensus 229 ~v~~~P~i~~~~~~~ 243 (411)
++..+|+++++..++
T Consensus 96 ~v~~iPt~~lid~~G 110 (132)
T cd02964 96 KVEGIPTLVVLKPDG 110 (132)
T ss_pred CCCCCCEEEEECCCC
Confidence 999999999997655
No 200
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.63 E-value=1.6e-07 Score=72.77 Aligned_cols=74 Identities=27% Similarity=0.543 Sum_probs=62.5
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-----------------------hhHHhhCccccc
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE-----------------------KSLMSKFNVQGF 233 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~-----------------------~~l~~~~~v~~~ 233 (411)
++++++.|+++||+.|+...+.+.++.+.+.. .+.++.|+++.. ..+.+.|++..+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 67999999999999999999999999999973 589999998875 678999999999
Q ss_pred cEEEEEcCCCCCcccccC
Q 015217 234 PTILVFGADKDSPIPYEG 251 (411)
Q Consensus 234 P~i~~~~~~~~~~~~y~g 251 (411)
|+++++.+++.....|.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999999766644444433
No 201
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.60 E-value=6.8e-07 Score=67.12 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=74.9
Q ss_pred EeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC
Q 015217 164 ELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK 243 (411)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~ 243 (411)
.+++.+..+.+.....+++|.|+.+++. .....|.++|..++..+.|+.+. +..+++++++.. |++++|++..
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc
Confidence 4444443333456788889999998774 68899999999999889999866 677888888765 9999998766
Q ss_pred CCcccccCCCCHHHHHHHHHH
Q 015217 244 DSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 244 ~~~~~y~g~~~~~~i~~fi~~ 264 (411)
+....|.|..+.++|.+||..
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHh
Confidence 667889999999999999865
No 202
>PLN02412 probable glutathione peroxidase
Probab=98.60 E-value=2.3e-07 Score=77.09 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=66.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c-Hh----HHHhcC--------------
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H-QS----LAQEYG-------------- 99 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~-~~----~~~~~~-------------- 99 (411)
++++++|.||++||+.|++..|.+.++.+.+++ .+.++.|+++. . .+ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 579999999999999999999999999999986 58888888741 1 11 123332
Q ss_pred --------------------CCcccEEEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217 100 --------------------IRGFPTIKVF-VPGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 100 --------------------i~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
+.+.|+.+++ ++|+.+.++.|..+.+.+...+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 2234666666 44666778889998888888877665
No 203
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.59 E-value=2.4e-07 Score=70.94 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=62.3
Q ss_pred eHHHHHHHHHHhh-cCccEEEEecCCCchhhHHHhCCCCCC--CCeEEEeecCCCccccCCCCC-ChhHHHHHHHHHc
Q 015217 296 YLEMLLSVAEKFK-RGHYSFVWAAAGKQPDLENRVGVGGYG--YPALVALNVKKGVYTPLKSAF-ELEHIVEFVKEAG 369 (411)
Q Consensus 296 ~~~~~~~~a~~~~-~~~~~f~~i~~~~~~~~~~~f~~~~~~--~P~l~v~~~~~~~~~~~~~~~-~~~~i~~fi~~~~ 369 (411)
+...++.+|++|+ ++ +.|+++|..+....++.||++..+ .|++++++..+.+|. +++++ |.++|.+|+.+++
T Consensus 36 ~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~-~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 36 WRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYV-MEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred HHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccC-CCcccCCHHHHHHHHHHhC
Confidence 4578999999999 68 999999998777799999999867 999999986556774 67888 9999999999873
No 204
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-07 Score=78.29 Aligned_cols=85 Identities=24% Similarity=0.531 Sum_probs=69.4
Q ss_pred CCcEEeCccc-hHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccc-----
Q 015217 160 NESIELNSSN-FDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQ----- 231 (411)
Q Consensus 160 ~~v~~l~~~~-~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~----- 231 (411)
..+..++..+ +.+.+.++ ...|+|-|++.|.+.|.+..|.|.+++..|.. .++||.||....++.+++|+|+
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence 4456664433 33333333 44899999999999999999999999999988 5999999999999999999986
Q ss_pred -cccEEEEEcCCCC
Q 015217 232 -GFPTILVFGADKD 244 (411)
Q Consensus 232 -~~P~i~~~~~~~~ 244 (411)
..||+++|.+|.+
T Consensus 204 rQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 204 RQLPTYILFQKGKE 217 (265)
T ss_pred ccCCeEEEEccchh
Confidence 4799999987764
No 205
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.59 E-value=2.8e-07 Score=71.78 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=55.0
Q ss_pred HHHhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCccc
Q 015217 172 ELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIP 248 (411)
Q Consensus 172 ~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~ 248 (411)
+...+.+++++|.|+++||++|+.+...+ .++.+..+.++....++.+....-....| ..+|+++++..+++...+
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCccc
Confidence 33456788999999999999999998865 56666666566666666543221122244 568999999777655555
Q ss_pred ccCC
Q 015217 249 YEGA 252 (411)
Q Consensus 249 y~g~ 252 (411)
..|.
T Consensus 96 i~Gy 99 (130)
T cd02960 96 ITGR 99 (130)
T ss_pred cccc
Confidence 5554
No 206
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.58 E-value=4.1e-07 Score=71.66 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=62.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------CCCchhHHhhCccccccE
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD---------------------CDSEKSLMSKFNVQGFPT 235 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~---------------------~~~~~~l~~~~~v~~~P~ 235 (411)
..++++|.||++||+.|+...+.+.++++.+. +....++ ++.+..+++.|++.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 34789999999999999999999998887742 1111111 134557999999999999
Q ss_pred EEEEcCCCCCcccccCCCCHHHHHH
Q 015217 236 ILVFGADKDSPIPYEGARTAGAIES 260 (411)
Q Consensus 236 i~~~~~~~~~~~~y~g~~~~~~i~~ 260 (411)
++++..++ ....+.|..+.+.|.+
T Consensus 97 ~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 97 IVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEcCCC-eEEEEeccCCHHHHHh
Confidence 99998766 5667788888877653
No 207
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.57 E-value=3.7e-07 Score=70.87 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v 216 (411)
..++++|.||++||++|+...+.+.++++.+.+.+.+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 3678999999999999999999999999888776666655
No 208
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.53 E-value=3.4e-06 Score=84.18 Aligned_cols=187 Identities=13% Similarity=0.161 Sum_probs=131.5
Q ss_pred hHHHHhcCC-CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc-CCCCCcc
Q 015217 170 FDELVLKSK-DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG-ADKDSPI 247 (411)
Q Consensus 170 ~~~~~~~~~-~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~-~~~~~~~ 247 (411)
+...+.+-. .+.++.|.++.|..|.++...+++++ .+.+++.+...+..++..++++|++...|++.+++ ++....+
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i 435 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGL 435 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccce
Confidence 444443333 45677888888999999999999999 55678988888888889999999999999999995 4433459
Q ss_pred cccCCCCHHHHHHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccEEE-------eHHHHHHHHHHhhcC--ccEEEEec
Q 015217 248 PYEGARTAGAIESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAICF-------YLEMLLSVAEKFKRG--HYSFVWAA 318 (411)
Q Consensus 248 ~y~g~~~~~~i~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~--~~~f~~i~ 318 (411)
+|.|-..-.++..|+...+......+.+.+-+ .+.+..+.++..+-+ +++...++++.+... .+..-.++
T Consensus 436 ~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~-~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~ 514 (555)
T TIGR03143 436 KFHGVPSGHELNSFILALYNAAGPGQPLGEEL-LEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMID 514 (555)
T ss_pred EEEecCccHhHHHHHHHHHHhcCCCCCCCHHH-HHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEE
Confidence 99998888888888887766544444331111 123333333332222 444444444443322 38888899
Q ss_pred CCCchhhHHHhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHH
Q 015217 319 AGKQPDLENRVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFV 365 (411)
Q Consensus 319 ~~~~~~~~~~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi 365 (411)
..+.++++++|++.. .|++++= ++. .+.|..+.++|.++|
T Consensus 515 ~~~~~~~~~~~~v~~--vP~~~i~---~~~--~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 515 VSHFPDLKDEYGIMS--VPAIVVD---DQQ--VYFGKKTIEEMLELI 554 (555)
T ss_pred CcccHHHHHhCCcee--cCEEEEC---CEE--EEeeCCCHHHHHHhh
Confidence 999999999999986 9999983 222 356777889988876
No 209
>smart00594 UAS UAS domain.
Probab=98.52 E-value=1.2e-06 Score=68.70 Aligned_cols=98 Identities=9% Similarity=0.129 Sum_probs=73.1
Q ss_pred eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC--chhHHhhCccccccEEEEE
Q 015217 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~~~P~i~~~ 239 (411)
-+-++..+...+..+..+|+|+++||+.|+.+.... .++.+.++.++.+..+|.++ ...++..|++.++|+++++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence 333444444455677999999999999999987753 66777777777777777553 4468999999999999999
Q ss_pred cCCCC-----CcccccCCCCHHHHHHHH
Q 015217 240 GADKD-----SPIPYEGARTAGAIESFA 262 (411)
Q Consensus 240 ~~~~~-----~~~~y~g~~~~~~i~~fi 262 (411)
...+. ...+..|..+.+++..++
T Consensus 94 ~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 94 DPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 65541 245678989998888764
No 210
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.50 E-value=1.3e-06 Score=73.25 Aligned_cols=69 Identities=22% Similarity=0.349 Sum_probs=57.1
Q ss_pred cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-----------------------------cHhHH
Q 015217 46 NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-----------------------------HQSLA 95 (411)
Q Consensus 46 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-----------------------------~~~~~ 95 (411)
.+++++||+||++||+.|....+.+.++.+.+++ ++.++.|.++. ...++
T Consensus 23 ~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 23 ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 3688999999999999999999999999999974 68888887753 12567
Q ss_pred HhcCCCcccEEEEEeCCCC
Q 015217 96 QEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 96 ~~~~i~~~P~~~~~~~g~~ 114 (411)
+.|++.+.|+++++..++.
T Consensus 103 ~~~~v~~~P~~~lid~~G~ 121 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGK 121 (171)
T ss_pred HHcCCCcCCcEEEECCCCe
Confidence 7899999999999965433
No 211
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.48 E-value=1.1e-06 Score=72.74 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=65.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------------chhHHhhCcc--ccccEEEEEcCCCCCc
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-------------EKSLMSKFNV--QGFPTILVFGADKDSP 246 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-------------~~~l~~~~~v--~~~P~i~~~~~~~~~~ 246 (411)
+|.||++||++|+...|.+.++++++. +.+..|+.+. ...+...||+ ..+|+.+++..++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999985 5555555442 2236678885 6899999997766543
Q ss_pred -ccccCCCCHHHHHHHHHHHhh
Q 015217 247 -IPYEGARTAGAIESFALEQLE 267 (411)
Q Consensus 247 -~~y~g~~~~~~i~~fi~~~~~ 267 (411)
..+.|..+.+.+.+.+.+.+.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHh
Confidence 368999999998888877653
No 212
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.47 E-value=8.4e-07 Score=68.96 Aligned_cols=73 Identities=38% Similarity=0.727 Sum_probs=64.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-ccHhHHHhcC--CCcccEEEEEeCCCCCcccCC
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-EHQSLAQEYG--IRGFPTIKVFVPGKPPVDYQG 120 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-~~~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g 120 (411)
++++++.||++||++|+.+.|.+.++++.+.+.+.+..+|.. ..+.+...++ +..+|++.++.++.......+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 789999999999999999999999999999877899999997 7899999999 999999988888765444444
No 213
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.46 E-value=5.5e-07 Score=73.78 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~ 89 (411)
++++++|.||++||+ |+...|.+.++.+.+++ .+.++.|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 589999999999999 99999999999999975 5888888763
No 214
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.44 E-value=9.9e-07 Score=93.61 Aligned_cols=93 Identities=16% Similarity=0.314 Sum_probs=76.3
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeC---------------------------CCchhHHhhC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDC---------------------------DSEKSLMSKF 228 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~---------------------------~~~~~l~~~~ 228 (411)
..++++|.||++||++|+...|.+.+++++|+++ +.+..|++ +.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4689999999999999999999999999999875 66666642 2234577889
Q ss_pred ccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhc
Q 015217 229 NVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETN 269 (411)
Q Consensus 229 ~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~ 269 (411)
++..+|+++++..+++...++.|....+.+.+++...+..+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYY 539 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhh
Confidence 99999999999766665677889888899999998887643
No 215
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.44 E-value=1e-06 Score=72.23 Aligned_cols=98 Identities=19% Similarity=0.142 Sum_probs=67.1
Q ss_pred eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-----------ccHhHHHh-cCC-
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN-----------EHQSLAQE-YGI- 100 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-----------~~~~~~~~-~~i- 100 (411)
++++.+. ...-++++++|.||++||++|+..+|.+.++.+.+++ .+.+..|+|+ ...+++++ +++
T Consensus 10 ~~G~~~~-l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~ 88 (153)
T TIGR02540 10 ARGRTVS-LEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVT 88 (153)
T ss_pred CCCCEec-HHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCC
Confidence 3444444 2223578999999999999999999999999999976 6888888862 11234432 332
Q ss_pred -------------------------CcccE----EEEE-eCCCCCcccCCCCCcchhHHHHHH
Q 015217 101 -------------------------RGFPT----IKVF-VPGKPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 101 -------------------------~~~P~----~~~~-~~g~~~~~~~g~~~~~~l~~~~~~ 133 (411)
.+.|+ .+++ ++|+...+|.|..+.+.+...+.+
T Consensus 89 fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 89 FPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 12564 4444 456667788888887777666654
No 216
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.41 E-value=6e-07 Score=71.28 Aligned_cols=67 Identities=28% Similarity=0.568 Sum_probs=54.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEecccc-------------------------HhHHHhc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGV---ATVAALDANEH-------------------------QSLAQEY 98 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---i~~~~vd~~~~-------------------------~~~~~~~ 98 (411)
.++.+.++|.+.||++|+.|-|.+.+..+..+.. +.++-|.-|++ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999888764 55555544432 2789999
Q ss_pred CCCcccEEEEEeCCC
Q 015217 99 GIRGFPTIKVFVPGK 113 (411)
Q Consensus 99 ~i~~~P~~~~~~~g~ 113 (411)
++.+.|++++....+
T Consensus 112 ~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGIPALVILKPDG 126 (157)
T ss_pred ccCcCceeEEecCCC
Confidence 999999999986543
No 217
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=72.98 Aligned_cols=172 Identities=17% Similarity=0.274 Sum_probs=112.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcch
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKP 126 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~ 126 (411)
+++..++.||++||..|.++...+..+++.. .+..+++++.+..++++..+.+...|++.++..|..+.+..|......
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 7889999999999999999999999999988 668999999999999999999999999999988877777766654443
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCcc---chHHHHhcC-CCeEEEEEeC-----CCChhhhhhh
Q 015217 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSS---NFDELVLKS-KDLWIVEFFA-----PWCGHCKKLA 197 (411)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~~~~~~~-~~~~lv~f~~-----~~c~~c~~~~ 197 (411)
...+ ........ ... ..+....+.+.... ...+.+... +...+++|-. |.|+..+.+.
T Consensus 95 ~~~~-~~~~~~~~-~~~-----------~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v 161 (227)
T KOG0911|consen 95 VSKV-EKLAESGS-ASL-----------GMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV 161 (227)
T ss_pred HHHH-HHhhhhcc-ccc-----------CCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence 2222 22211110 000 00111111111100 122222222 2234555653 5787777776
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCchhHHhhCc----cccccEEEE
Q 015217 198 PEWKKAANNLKGKVKLGHVDCDSEKSLMSKFN----VQGFPTILV 238 (411)
Q Consensus 198 ~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~----v~~~P~i~~ 238 (411)
..+... .+.|+..|.-++.++.+... ...+|.+++
T Consensus 162 ~iL~~~------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI 200 (227)
T KOG0911|consen 162 GILQSH------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV 200 (227)
T ss_pred HHHHHc------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeE
Confidence 666543 25588888888888776543 346787776
No 218
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.40 E-value=1.3e-06 Score=59.62 Aligned_cols=60 Identities=45% Similarity=0.914 Sum_probs=52.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHH---hcCCCcccEEEEEeCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQ---EYGIRGFPTIKVFVPG 112 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g 112 (411)
++.||++||++|++..+.+.++ ....+++.+..++++....... .+++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 5555679999999998877665 8899999999998876
No 219
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.38 E-value=1.6e-07 Score=78.61 Aligned_cols=102 Identities=30% Similarity=0.548 Sum_probs=90.0
Q ss_pred CCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 159 SNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 159 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
.+.++.++.+++...+ ...|++.|+++||+.|+.+.+.|...|.--.+ .+.++.||.+.++.|.-+|-+...|+|+
T Consensus 23 ~s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred cceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence 3478899999998864 56799999999999999999999998877666 5999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 238 VFGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 238 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
-.++|. .-+|.|+++..++.+|+...
T Consensus 100 HvkDGe--FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 100 HVKDGE--FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred Eeeccc--cccccCcccchhHHHHHHhh
Confidence 998766 88999999999999998554
No 220
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.38 E-value=1.1e-06 Score=63.65 Aligned_cols=66 Identities=33% Similarity=0.555 Sum_probs=52.1
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~ 240 (411)
..+.+++++|.|+++||+.|+.+...+ .++.+.+..++.+..+|.+......+ +...++|+++++.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 456689999999999999999999887 56666677789999999876665432 2225699999985
No 221
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.35 E-value=2.5e-06 Score=67.46 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC---------------------------CchhHHhhC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD---------------------------SEKSLMSKF 228 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~---------------------------~~~~l~~~~ 228 (411)
..++++|.||+.||+.|....+.+.++.+++.+ .+.+..|+.+ ....+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457999999999999999999999999999986 4777666541 122356667
Q ss_pred ccccccEEEEEcCCCCCcccccC
Q 015217 229 NVQGFPTILVFGADKDSPIPYEG 251 (411)
Q Consensus 229 ~v~~~P~i~~~~~~~~~~~~y~g 251 (411)
++..+|+.+++..++.....+.|
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEec
Confidence 88888888888665543444444
No 222
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.35 E-value=1e-05 Score=63.94 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=83.6
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCC--C-hhh-hhhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHhhCccc--c
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPW--C-GHC-KKLAPEWKKAANNLKGK-VKLGHVDCDSEKSLMSKFNVQ--G 232 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~--c-~~c-~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~l~~~~~v~--~ 232 (411)
+.+++|++.+..+..=..+..-+|.|...- | +.+ ......+.++|+.|+++ +.|+.+|.+....+.+.||+. .
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccC
Confidence 458888887765532233556666665421 1 112 56788999999999999 999999999988899999995 4
Q ss_pred ccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcC
Q 015217 233 FPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270 (411)
Q Consensus 233 ~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~ 270 (411)
+|+++++.........+.|+++.++|.+|+...+....
T Consensus 82 ~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 82 YPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 89999997654323337799999999999999887554
No 223
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.33 E-value=2.7e-06 Score=81.49 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=77.8
Q ss_pred EEeCcc-chHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHH-HHHHHhcC-CeEEEEEeCCCc----hhHHhhCcccccc
Q 015217 163 IELNSS-NFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWK-KAANNLKG-KVKLGHVDCDSE----KSLMSKFNVQGFP 234 (411)
Q Consensus 163 ~~l~~~-~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~-~~a~~~~~-~~~f~~v~~~~~----~~l~~~~~v~~~P 234 (411)
..++.. ++++.+.+. ++++++.||++||-.|+.+.+.-- +....++- .+..-.+|.+.+ .++.++||+-+.|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 556666 666654333 239999999999999999987542 33333322 477888887654 3688999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 235 TILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
++++|..+++++....|.++.+.+.+++++.
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 9999986666677789999999999998764
No 224
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.31 E-value=2.1e-06 Score=60.65 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=50.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCCCCcccCCCCCcchh
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI 127 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l 127 (411)
+..|+++||++|+...+.+.+ ..+.+..+|++++++ +++.+++.++|++++. |+. ..| .+++.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 578999999999999888765 247888899987654 5677999999998773 432 444 355666
Q ss_pred HHHH
Q 015217 128 AEFA 131 (411)
Q Consensus 128 ~~~~ 131 (411)
.+++
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 6554
No 225
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.30 E-value=3e-06 Score=60.26 Aligned_cols=73 Identities=25% Similarity=0.573 Sum_probs=55.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCC-CCCcchhHHHH
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQG-ARDVKPIAEFA 131 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g-~~~~~~l~~~~ 131 (411)
|.+++++|++|..+...+.+++..+ + +.+-.+|..+.+++ .+||+..+|++++ +|+ ..+.| ..+.+.+..|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence 3447888999999999999999988 4 66777777666666 9999999999865 665 57888 77777777776
Q ss_pred H
Q 015217 132 L 132 (411)
Q Consensus 132 ~ 132 (411)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 3
No 226
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.21 E-value=5.1e-06 Score=65.41 Aligned_cols=67 Identities=24% Similarity=0.509 Sum_probs=56.0
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------cHhHHHhcCCC--
Q 015217 47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIR-- 101 (411)
Q Consensus 47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------~~~~~~~~~i~-- 101 (411)
.+++++|.||+. ||++|+...+.+.++...++. ++.++.|..+. +.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 679999999999 999999999999999998885 58888887753 23678888888
Q ss_pred ----cccEEEEEeCCC
Q 015217 102 ----GFPTIKVFVPGK 113 (411)
Q Consensus 102 ----~~P~~~~~~~g~ 113 (411)
..|+++++..++
T Consensus 104 ~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTSEESEEEEEEETTS
T ss_pred cCCceEeEEEEECCCC
Confidence 888888887654
No 227
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.21 E-value=7e-06 Score=66.19 Aligned_cols=83 Identities=19% Similarity=0.230 Sum_probs=62.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------cHhHHHhcCCCcc
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------HQSLAQEYGIRGF 103 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------~~~~~~~~~i~~~ 103 (411)
++++++|.|| +.||+.|....+.+.++.+.+.+ ++.++.|..+. +..+++.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4889999999 58999999999999999988864 46776665542 2367888888887
Q ss_pred ---------cEEEEEeC-CCCCcccCCCCCcchhHH
Q 015217 104 ---------PTIKVFVP-GKPPVDYQGARDVKPIAE 129 (411)
Q Consensus 104 ---------P~~~~~~~-g~~~~~~~g~~~~~~l~~ 129 (411)
|+.++++. |+....+.|......+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 88888864 666777777776555443
No 228
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.20 E-value=5.7e-05 Score=57.09 Aligned_cols=105 Identities=21% Similarity=0.419 Sum_probs=79.3
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH-hcC--CeEEEEEeCC-----CchhHHhhCccc
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN-LKG--KVKLGHVDCD-----SEKSLMSKFNVQ 231 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~-~~~--~~~f~~v~~~-----~~~~l~~~~~v~ 231 (411)
...+.|++-+|.+. +...+.++|.|-... |+ -+....|.++|++ ... .+-++.|-.. .+.+|+++|++.
T Consensus 4 ~G~v~LD~~tFdKv-i~kf~~~LVKFD~ay-Py-GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 4 KGCVPLDELTFDKV-IPKFKYVLVKFDVAY-PY-GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TTSEEESTTHHHHH-GGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred Cceeeccceehhhe-eccCceEEEEEeccC-CC-cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 45789999999996 566789999997643 21 5677889999944 322 5888888643 467899999994
Q ss_pred --cccEEEEEcCCCCCcccc--cCCCCHHHHHHHHHHHhh
Q 015217 232 --GFPTILVFGADKDSPIPY--EGARTAGAIESFALEQLE 267 (411)
Q Consensus 232 --~~P~i~~~~~~~~~~~~y--~g~~~~~~i~~fi~~~~~ 267 (411)
.+|.+.+|..+.+.++.| .|+.+.++|.+|+..+..
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 689999999888889999 889999999999998854
No 229
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.20 E-value=2.4e-05 Score=60.01 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=77.4
Q ss_pred cEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH---hcCCeEEEEEeCCCchhHHhhCcccc--ccEE
Q 015217 162 SIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN---LKGKVKLGHVDCDSEKSLMSKFNVQG--FPTI 236 (411)
Q Consensus 162 v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~---~~~~~~f~~v~~~~~~~l~~~~~v~~--~P~i 236 (411)
|.+++.++.... .....+..++|+.+ ..-..+...+.++|+. +++++.|+.+|.+......+.||++. +|.+
T Consensus 1 ~~e~t~e~~~~~-~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEEL-TEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHH-hcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 356777788764 45554444455543 2236788999999999 99999999999988777999999986 8999
Q ss_pred EEEcCCCCCccc-ccCCCCHHHHHHHHHHHhh
Q 015217 237 LVFGADKDSPIP-YEGARTAGAIESFALEQLE 267 (411)
Q Consensus 237 ~~~~~~~~~~~~-y~g~~~~~~i~~fi~~~~~ 267 (411)
.+....+...+. +.+..+.++|..|+...+.
T Consensus 78 ~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 998654422344 5678899999999988653
No 230
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.1e-05 Score=61.62 Aligned_cols=86 Identities=16% Similarity=0.290 Sum_probs=68.4
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----------------chhHHhhCcccccc
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDCDS----------------EKSLMSKFNVQGFP 234 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~~~----------------~~~l~~~~~v~~~P 234 (411)
+...++..++.|.++.|.+|..+.... .++-..+.+++.++.++... .++|++.|+++++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 445577899999999999999998876 55666777788888877442 34799999999999
Q ss_pred EEEEEcCCCCCcccccCCCCHHHHH
Q 015217 235 TILVFGADKDSPIPYEGARTAGAIE 259 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y~g~~~~~~i~ 259 (411)
++++|...++......|-+..++..
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl 142 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFL 142 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHH
Confidence 9999988776566778887776654
No 231
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.15 E-value=1e-05 Score=62.39 Aligned_cols=92 Identities=9% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHhcCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCCcccEEEEEe--CCC-
Q 015217 43 KVLNANGVVLVEFYAP----WCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIRGFPTIKVFV--PGK- 113 (411)
Q Consensus 43 ~~~~~~~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~--~g~- 113 (411)
....+.|+++|++|++ ||..|+... .=.++.+.+..++.+...|++. ..+++..+++.++|++.++. +++
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 4466889999999999 788885533 2245666666778888888874 45799999999999999983 232
Q ss_pred -CCcccCCCCCcchhHHHHHHHH
Q 015217 114 -PPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 114 -~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
.+.+..|..+++++...+...+
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHH
Confidence 2668899999999999988765
No 232
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.14 E-value=2e-05 Score=67.02 Aligned_cols=86 Identities=23% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-------------C-----CCchhHHhhCccccccEEEE
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD-------------C-----DSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~-------------~-----~~~~~l~~~~~v~~~P~i~~ 238 (411)
..++++|+||++||+.|+...|.+.++.+....++.+...+ . ....++.+.|++..+|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 45789999999999999999999999887654344433311 0 11345778899999999999
Q ss_pred EcCCCCCcccccCCC-CHHHHHHHHHH
Q 015217 239 FGADKDSPIPYEGAR-TAGAIESFALE 264 (411)
Q Consensus 239 ~~~~~~~~~~y~g~~-~~~~i~~fi~~ 264 (411)
+..++ .+.+.|.. ..+.+.+.+..
T Consensus 153 ID~~G--~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 153 LDQDG--KIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred ECCCC--eEEEccCCCCHHHHHHHHHH
Confidence 87666 45566653 44566555543
No 233
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.13 E-value=1.7e-05 Score=64.47 Aligned_cols=78 Identities=26% Similarity=0.473 Sum_probs=60.7
Q ss_pred CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC---------------------chhHHhhCccc--
Q 015217 177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS---------------------EKSLMSKFNVQ-- 231 (411)
Q Consensus 177 ~~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~---------------------~~~l~~~~~v~-- 231 (411)
..++++|.||+. ||++|+...+.+.++++.+..+ +.+..|..+. +..+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 467899999999 9999999999999999987764 7777666443 33588888988
Q ss_pred -------cccEEEEEcCCCCCcccccCCCC
Q 015217 232 -------GFPTILVFGADKDSPIPYEGART 254 (411)
Q Consensus 232 -------~~P~i~~~~~~~~~~~~y~g~~~ 254 (411)
.+|+++++..++.......|...
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 89999999877754444455444
No 234
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=6.2e-05 Score=66.16 Aligned_cols=108 Identities=20% Similarity=0.292 Sum_probs=82.7
Q ss_pred CCCCCcEEeCccchhHHHhc--CCCeEEEEEECCC----ChhhhhhhHHHHHHHHHhCC--------CeEEEEEeccccH
Q 015217 27 GSSSPVVQLTPNNFKSKVLN--ANGVVLVEFYAPW----CGHCQALTPIWEKAATVLKG--------VATVAALDANEHQ 92 (411)
Q Consensus 27 ~~~~~~~~l~~~~f~~~~~~--~~~~~~v~f~~~~----C~~C~~~~~~~~~~~~~~~~--------~i~~~~vd~~~~~ 92 (411)
..+..|+.++++.|.+.+.. ++...+|+|+|.. |.-|+.+..++.-++..+.. ++-|.+||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 67788999999999954433 3346889999874 99999999999999987751 5899999999999
Q ss_pred hHHHhcCCCcccEEEEEeCCCCCc----cc---CCCCCcchhHHHHHHH
Q 015217 93 SLAQEYGIRGFPTIKVFVPGKPPV----DY---QGARDVKPIAEFALQQ 134 (411)
Q Consensus 93 ~~~~~~~i~~~P~~~~~~~g~~~~----~~---~g~~~~~~l~~~~~~~ 134 (411)
+..+.++++..|++++|.+.+.-. .+ .-...++++.+|+++.
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 999999999999999996533211 11 1122366677777654
No 235
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.11 E-value=9.4e-06 Score=57.87 Aligned_cols=56 Identities=27% Similarity=0.503 Sum_probs=42.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHh-----cCCCcccEEEEEeCCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE-----YGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~-----~~i~~~P~~~~~~~g~~ 114 (411)
++.||++||++|+++.+.+.+.. +.+..+|+++++..... +++.++|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE
Confidence 67899999999999999886653 34556888877655544 389999997 5666643
No 236
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.10 E-value=2.6e-05 Score=65.91 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=66.0
Q ss_pred EeCccchhHHHhcCCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------c-H---hH-HHhc-
Q 015217 34 QLTPNNFKSKVLNANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------H-Q---SL-AQEY- 98 (411)
Q Consensus 34 ~l~~~~f~~~~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------~-~---~~-~~~~- 98 (411)
.++++.+. ...-++++ +++.+|++||++|+..+|.+.++.+.+++ .+.++.|+|+. + . .+ .+++
T Consensus 27 d~~G~~vs-Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~ 105 (183)
T PTZ00256 27 DIDGQLVQ-LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN 105 (183)
T ss_pred cCCCCEEe-HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC
Confidence 34454444 22225665 45667999999999999999999999986 58888888641 0 1 11 1122
Q ss_pred -----------------------------------CCCcccE---EEEE-eCCCCCcccCCCCCcchhHHHHHHHH
Q 015217 99 -----------------------------------GIRGFPT---IKVF-VPGKPPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 99 -----------------------------------~i~~~P~---~~~~-~~g~~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
++.++|+ .+++ ++|+.+.+|.|..+.+.+.+.+.+.+
T Consensus 106 ~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 106 VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2335673 3444 45666778888888887777776654
No 237
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.09 E-value=2e-05 Score=67.93 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------CchhHHhhCccccccEEEEEcCCC-CC
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-----------SEKSLMSKFNVQGFPTILVFGADK-DS 245 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-----------~~~~l~~~~~v~~~P~i~~~~~~~-~~ 245 (411)
++..+++||.+.|+.|+.+.+++..+++.++ +.+..|+.| .+..+++++||..+|+++++..+. ..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5678999999999999999999999999996 444444444 357899999999999999997665 32
Q ss_pred cccccCCCCHHHHHHH
Q 015217 246 PIPYEGARTAGAIESF 261 (411)
Q Consensus 246 ~~~y~g~~~~~~i~~f 261 (411)
...-.|..+.++|.+-
T Consensus 198 ~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEeeecCCHHHHHHh
Confidence 3333577888887653
No 238
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.09 E-value=5e-06 Score=67.64 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=77.8
Q ss_pred CCcEEeC-ccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 30 SPVVQLT-PNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 30 ~~~~~l~-~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
....++. ..+|- ....+...+++.||-+.-..|+-+...++.+++.+-+ ..|++||+.+.|-++.+++|.-.|++.+
T Consensus 66 G~y~ev~~Ekdf~-~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFF-EEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHH-HHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 3345555 55666 4456788999999999999999999999999998876 5999999999999999999999999999
Q ss_pred EeCCCCCcccCCCCCc
Q 015217 109 FVPGKPPVDYQGARDV 124 (411)
Q Consensus 109 ~~~g~~~~~~~g~~~~ 124 (411)
|.+|....++.|..+.
T Consensus 144 ~k~g~~~D~iVGF~dL 159 (211)
T KOG1672|consen 144 FKNGKTVDYVVGFTDL 159 (211)
T ss_pred EEcCEEEEEEeeHhhc
Confidence 9999876666664433
No 239
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.09 E-value=1.7e-05 Score=68.42 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=65.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc-----------ccHhHHHhcCCCcccEEEEEeCCC-C
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN-----------EHQSLAQEYGIRGFPTIKVFVPGK-P 114 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~-----------~~~~~~~~~~i~~~P~~~~~~~g~-~ 114 (411)
.++..|++||.+.|+.|+.+.|.+..+++.+. +.+..|+.| .+..+++++||..+|+++++..++ .
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 57899999999999999999999999999984 444445554 357899999999999999997654 2
Q ss_pred -CcccCCCCCcchhHHH
Q 015217 115 -PVDYQGARDVKPIAEF 130 (411)
Q Consensus 115 -~~~~~g~~~~~~l~~~ 130 (411)
...-.|..+.++|.+-
T Consensus 197 ~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEEeeecCCHHHHHHh
Confidence 3344688888877654
No 240
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.07 E-value=3e-05 Score=55.09 Aligned_cols=70 Identities=20% Similarity=0.491 Sum_probs=54.0
Q ss_pred EeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccC-CCCHHHHHHHH
Q 015217 185 FFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEG-ARTAGAIESFA 262 (411)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g-~~~~~~i~~fi 262 (411)
+++++|+.|..+...+.+++..++ +.+-.++....+.+ .+||+.++|++++ ++ ...+.| -.+.+.+.+|+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELL 75 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHh
Confidence 367789999999999999999984 66677776555555 9999999999977 33 577889 56778888776
No 241
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.05 E-value=9.9e-05 Score=55.79 Aligned_cols=96 Identities=11% Similarity=0.217 Sum_probs=71.2
Q ss_pred cEEeCc-cchHHHHhc-CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 162 SIELNS-SNFDELVLK-SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 162 v~~l~~-~~~~~~~~~-~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
+..+++ +++..+ .. .+...+|.|+...- ......|.++|..++..+.|+... +..+.+.+++. .|+++++
T Consensus 2 v~~i~~~~~~e~~-~~~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAF-ENIEDDIKLIGYFKSED---SEHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHH-hcccCCeEEEEEECCCC---CHHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEe
Confidence 345544 446665 45 56677777776533 367889999999999999998744 66778888876 5999999
Q ss_pred cCCCCCcccc-cCCCCHHHHHHHHHHH
Q 015217 240 GADKDSPIPY-EGARTAGAIESFALEQ 265 (411)
Q Consensus 240 ~~~~~~~~~y-~g~~~~~~i~~fi~~~ 265 (411)
+...+....| .|..+.+.|.+||..+
T Consensus 74 ~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 7644556779 7788999999999764
No 242
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.05 E-value=3.5e-05 Score=67.13 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=65.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCC-------c----hhHH-hhCcc-------------
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCDS-------E----KSLM-SKFNV------------- 230 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~~-------~----~~l~-~~~~v------------- 230 (411)
..++++|.||++||++|....+.+.++.+++.++ +.+..|+++. + ...+ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3579999999999999999999999999999874 8888888641 1 1222 23332
Q ss_pred ---------------------ccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHh
Q 015217 231 ---------------------QGFPTILVFGADKDSPIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 231 ---------------------~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~ 266 (411)
...|+.+++..+++...+|.|..+.++|...|.+.+
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 113667777766666777888888888887776654
No 243
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.05 E-value=5.7e-05 Score=63.15 Aligned_cols=91 Identities=14% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-----------------------------chhHHh
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-----------------------------EKSLMS 226 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-----------------------------~~~l~~ 226 (411)
..++++++||++||+.|....+.+.++...+.+ ++.|..|+.+. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 467899999999999999999999999999985 58888887643 123567
Q ss_pred hCccccccEEEEEcCCCCCcccccC-----------CCCHHHHHHHHHHHhhhc
Q 015217 227 KFNVQGFPTILVFGADKDSPIPYEG-----------ARTAGAIESFALEQLETN 269 (411)
Q Consensus 227 ~~~v~~~P~i~~~~~~~~~~~~y~g-----------~~~~~~i~~fi~~~~~~~ 269 (411)
.|++...|+++++..++. +.|.+ ..+...+.+-|...+...
T Consensus 104 ~~~v~~~P~~~lid~~G~--v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK--LVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCcCCcEEEECCCCe--EEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 888999999999976663 34443 234567777777766543
No 244
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.03 E-value=5e-05 Score=67.42 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=73.0
Q ss_pred CCCcEEeCc-cchHHHHhcCC--CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217 159 SNESIELNS-SNFDELVLKSK--DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (411)
Q Consensus 159 ~~~v~~l~~-~~~~~~~~~~~--~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~ 235 (411)
-..+.+++. +.|.+.+.... ..++|+||.+.++.|..+...+..+|..|.. ++|..|..+..+ +..+|....+|+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 345788865 77888664443 3789999999999999999999999999885 999998866544 678899999999
Q ss_pred EEEEcCCCCCcccc------cC-CCCHHHHHHHHHHHh
Q 015217 236 ILVFGADKDSPIPY------EG-ARTAGAIESFALEQL 266 (411)
Q Consensus 236 i~~~~~~~~~~~~y------~g-~~~~~~i~~fi~~~~ 266 (411)
|++|++|.- ...+ -| .++..+|..|+.++-
T Consensus 202 llvYk~G~l-~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 202 LLVYKNGDL-IGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEEETTEE-EEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEEECCEE-EEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 999997642 1111 12 467788888887764
No 245
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.03 E-value=3.3e-05 Score=64.23 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEecc
Q 015217 47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDAN 89 (411)
Q Consensus 47 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~ 89 (411)
++++++|.||+.| |++|....+.+.++.+.+. ++.++.|.++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCC
Confidence 5789999999999 9999999999999999884 5677767664
No 246
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=63.17 Aligned_cols=68 Identities=25% Similarity=0.541 Sum_probs=55.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---eEEEEEeCCCc-------------------------hhHHhhC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK---VKLGHVDCDSE-------------------------KSLMSKF 228 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~f~~v~~~~~-------------------------~~l~~~~ 228 (411)
.++.+.++|.+.||++|+.+.|.+.+........ +.+..|+.+.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4589999999999999999999988888887775 66676765542 3478899
Q ss_pred ccccccEEEEEcCCCC
Q 015217 229 NVQGFPTILVFGADKD 244 (411)
Q Consensus 229 ~v~~~P~i~~~~~~~~ 244 (411)
+|...|++++....+.
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 9999999999976653
No 247
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.02 E-value=3.1e-05 Score=62.66 Aligned_cols=82 Identities=17% Similarity=0.352 Sum_probs=56.8
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEeccccHhHHHhc--------C
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPI-W--EKAATVLKGVATVAALDANEHQSLAQEY--------G 99 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~i~~~~vd~~~~~~~~~~~--------~ 99 (411)
.-...+++.+. .+..++++++|.++.+||..|..+..+ + .++++.+..++.-++||-++.+++-..| |
T Consensus 21 ~W~~w~~ea~~-~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 21 NWQPWGEEALE-KAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp --B-SSHHHHH-HHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred CcccCCHHHHH-HHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcC
Confidence 34456666777 778899999999999999999988873 3 5688888888888999999999888887 7
Q ss_pred CCcccEEEEEeCCC
Q 015217 100 IRGFPTIKVFVPGK 113 (411)
Q Consensus 100 i~~~P~~~~~~~g~ 113 (411)
..|+|+.+++.+..
T Consensus 100 ~gGwPl~vfltPdg 113 (163)
T PF03190_consen 100 SGGWPLTVFLTPDG 113 (163)
T ss_dssp ---SSEEEEE-TTS
T ss_pred CCCCCceEEECCCC
Confidence 88999988886543
No 248
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.02 E-value=2.6e-05 Score=52.94 Aligned_cols=60 Identities=38% Similarity=0.800 Sum_probs=50.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh---hCccccccEEEEEcCC
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS---KFNVQGFPTILVFGAD 242 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~---~~~v~~~P~i~~~~~~ 242 (411)
++.|+.+||+.|....+.+.++ ......+.+..++++....... .+++..+|+++++..+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 5555679999999988776655 7889999999998765
No 249
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.01 E-value=4e-05 Score=65.53 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=38.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD 219 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~ 219 (411)
..++++|.||++||++|+...+.+.++.+++.++ +.+..|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 3579999999999999999999999999999874 888888763
No 250
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.01 E-value=3.9e-05 Score=64.30 Aligned_cols=86 Identities=15% Similarity=0.196 Sum_probs=59.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~ 96 (411)
++++++|.|| +.||+.|....+.+.++.+.+.. ++.++.|.++. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5789999999 89999999999999999999864 46666665542 225667
Q ss_pred hcCCC------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHH
Q 015217 97 EYGIR------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFAL 132 (411)
Q Consensus 97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~ 132 (411)
+||+. ..|+.++++. |+....+.+. .+.+++.+.+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~ 154 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD 154 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 77876 5678888864 5444444332 23344555554
No 251
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.01 E-value=3.9e-05 Score=59.33 Aligned_cols=67 Identities=33% Similarity=0.692 Sum_probs=59.5
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHhhCc--cccccEEEEEcCCCC
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD-SEKSLMSKFN--VQGFPTILVFGADKD 244 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~-~~~~l~~~~~--v~~~P~i~~~~~~~~ 244 (411)
.++.++.||++||++|+...+.+.++++.+...+.+..++.. ....+...|+ +..+|+++++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 668888889999999999999999999999988889999986 7888999999 899999998876654
No 252
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.00 E-value=1.4e-05 Score=57.98 Aligned_cols=58 Identities=29% Similarity=0.433 Sum_probs=44.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----hHHHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|+++||++|+++.+.+.+.. .++.+.+..+|.+.+. .+.+.+|+..+|++++ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 57899999999999999999877 3444677777776443 3666779999999743 554
No 253
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.99 E-value=8.8e-05 Score=56.25 Aligned_cols=89 Identities=27% Similarity=0.494 Sum_probs=66.7
Q ss_pred cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC------
Q 015217 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA------ 241 (411)
Q Consensus 168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~------ 241 (411)
+++..+ ....+..+|.|+...- ......|.++|..++..+.|+... +..+.+.+++ .|++++|++
T Consensus 9 ~~l~~f-~~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKF-LSDDDASVVGFFEDED---SKLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHH-hccCCcEEEEEEcCCC---chHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhcc
Confidence 345554 4556667777776532 357899999999999889998744 6678889998 588999943
Q ss_pred CCCCcccccCCCCHHHHHHHHHHH
Q 015217 242 DKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 242 ~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
-.+....|.|..+.+.|.+||..+
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 234456799999999999999764
No 254
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.97 E-value=2.3e-05 Score=69.57 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=65.5
Q ss_pred CCcEEeCc-cchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEE
Q 015217 30 SPVVQLTP-NNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTI 106 (411)
Q Consensus 30 ~~~~~l~~-~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~ 106 (411)
..+.+++. +.|...+.. ++..|||+||.+.++.|+.+...|..+|..++. +.|++|....-+ ++..|.+...|+|
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCEE
Confidence 45678864 677744433 245799999999999999999999999999875 799999987665 7889999999999
Q ss_pred EEEeCCCCCcccCC
Q 015217 107 KVFVPGKPPVDYQG 120 (411)
Q Consensus 107 ~~~~~g~~~~~~~g 120 (411)
++|++|..+.++.|
T Consensus 203 lvYk~G~l~~~~V~ 216 (265)
T PF02114_consen 203 LVYKNGDLIGNFVG 216 (265)
T ss_dssp EEEETTEEEEEECT
T ss_pred EEEECCEEEEeEEe
Confidence 99999876444433
No 255
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.96 E-value=3.6e-05 Score=54.18 Aligned_cols=68 Identities=16% Similarity=0.448 Sum_probs=51.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (411)
+.+|+++||++|+...+.+.+ ..+.+..+|.+.++. +++.+++.++|++++. +. ...| .+.+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~---~~---~~~g-~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG---HK---IIVG-FDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC---CE---EEee-CCHHH
Confidence 568999999999999888865 247788888876543 5667999999999884 21 1445 57778
Q ss_pred HHHHH
Q 015217 258 IESFA 262 (411)
Q Consensus 258 i~~fi 262 (411)
|.+++
T Consensus 69 i~~~i 73 (74)
T TIGR02196 69 LDQLL 73 (74)
T ss_pred HHHHh
Confidence 87775
No 256
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00017 Score=63.49 Aligned_cols=113 Identities=23% Similarity=0.378 Sum_probs=88.6
Q ss_pred CCCCcEEeCccchHHHHhcCCC--eEEEEEeCC----CChhhhhhhHHHHHHHHHhcC--------CeEEEEEeCCCchh
Q 015217 158 DSNESIELNSSNFDELVLKSKD--LWIVEFFAP----WCGHCKKLAPEWKKAANNLKG--------KVKLGHVDCDSEKS 223 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~~~----~c~~c~~~~~~~~~~a~~~~~--------~~~f~~v~~~~~~~ 223 (411)
+...|+.+++..+..++..... ..+|+|.+. .|+-|+...+.|.-+|..++. ++-|+.||.++.+.
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 5678999999999998764433 677788763 699999999999999998864 58899999999999
Q ss_pred HHhhCccccccEEEEEcCCCCC---cccccC---CCCHHHHHHHHHHHhhhcC
Q 015217 224 LMSKFNVQGFPTILVFGADKDS---PIPYEG---ARTAGAIESFALEQLETNV 270 (411)
Q Consensus 224 l~~~~~v~~~P~i~~~~~~~~~---~~~y~g---~~~~~~i~~fi~~~~~~~~ 270 (411)
+.+.++++++|++++|.+.... ...+.+ ...++++.+|+.+...-+.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 9999999999999999543321 111211 2348999999988876444
No 257
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.91 E-value=6.2e-05 Score=61.26 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=35.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccccH
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANEHQ 92 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~~~ 92 (411)
++.+++.|++.||+.|+...+.+.++.+.+.+ .+.++.|..+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 34555555699999999999999999999864 5888888877544
No 258
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.91 E-value=8e-05 Score=61.09 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=62.5
Q ss_pred EEeCccchhHHHhcCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc--------------------
Q 015217 33 VQLTPNNFKSKVLNANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------- 90 (411)
Q Consensus 33 ~~l~~~~f~~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------- 90 (411)
..++.+.+. ...-++++++|.||+. ||+.|....+.+.++.+.+.+ ++.++.|..+.
T Consensus 16 ~~~~G~~~~-l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D 94 (154)
T PRK09437 16 PDQDGEQVS-LTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSD 94 (154)
T ss_pred eCCCCCEEe-HHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence 344444444 2223578999999976 688899999999999888865 47777776642
Q ss_pred -cHhHHHhcCCCcc------------cEEEEEe-CCCCCcccCCCCCcch
Q 015217 91 -HQSLAQEYGIRGF------------PTIKVFV-PGKPPVDYQGARDVKP 126 (411)
Q Consensus 91 -~~~~~~~~~i~~~------------P~~~~~~-~g~~~~~~~g~~~~~~ 126 (411)
...+.++||+... |+.++++ +|+....|.|....+.
T Consensus 95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 2356777787653 5556664 5665667777655444
No 259
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.89 E-value=0.00017 Score=53.92 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=71.5
Q ss_pred EeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCC-
Q 015217 34 QLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPG- 112 (411)
Q Consensus 34 ~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g- 112 (411)
.++..+..+.+...+++++|-|+.++|. .....+.++|..+++.+.|+.+. +.++.+++++.. |++++|++.
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcc
Confidence 3444333324567889999999999887 56778999999998888998877 567778887754 888888764
Q ss_pred CCCcccCCCCCcchhHHHHHH
Q 015217 113 KPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 113 ~~~~~~~g~~~~~~l~~~~~~ 133 (411)
.....|.|..+.+.|.+|+..
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHh
Confidence 446789999988999999863
No 260
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.89 E-value=0.00011 Score=53.69 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=58.6
Q ss_pred eHHHHHHHHHHhhcC-ccEEEEecCCCch----hhHHHhCCCCCCCCeEEEeecCCCc--cccCCCC---CChhHHHHHH
Q 015217 296 YLEMLLSVAEKFKRG-HYSFVWAAAGKQP----DLENRVGVGGYGYPALVALNVKKGV--YTPLKSA---FELEHIVEFV 365 (411)
Q Consensus 296 ~~~~~~~~a~~~~~~-~~~f~~i~~~~~~----~~~~~f~~~~~~~P~l~v~~~~~~~--~~~~~~~---~~~~~i~~fi 365 (411)
++++++++|+.+.+. .+.|+|||.++.| -+-+.|+++- .-|.+.+++...+. |...++. -+.++|++||
T Consensus 38 Fl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl-~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~Wi 116 (120)
T cd03074 38 FLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL-FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWI 116 (120)
T ss_pred HHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc-CCCceeeEecccccceeEecccccccCcHHHHHHHH
Confidence 789999999999976 4999999999886 4667888875 47999999977543 4334333 7899999999
Q ss_pred HHHc
Q 015217 366 KEAG 369 (411)
Q Consensus 366 ~~~~ 369 (411)
++++
T Consensus 117 edVL 120 (120)
T cd03074 117 EDVL 120 (120)
T ss_pred HhhC
Confidence 9875
No 261
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.89 E-value=0.00012 Score=63.11 Aligned_cols=39 Identities=15% Similarity=0.467 Sum_probs=31.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEE
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAAL 86 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~v 86 (411)
+++.+|.|+...|+||..+++.+ ..+.+.+++++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 56789999999999999999876 7888888765555443
No 262
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.87 E-value=8.1e-05 Score=63.11 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-------------------------cHhHHHhcC
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE-------------------------HQSLAQEYG 99 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-------------------------~~~~~~~~~ 99 (411)
++++++|.|| +.||+.|....+.+.++.+.+.+ .+.++.|.++. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 99999999999999999888864 45555555442 236788889
Q ss_pred CC------cccEEEEEe-CCCC
Q 015217 100 IR------GFPTIKVFV-PGKP 114 (411)
Q Consensus 100 i~------~~P~~~~~~-~g~~ 114 (411)
+. ..|+.+++. +|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I 131 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVI 131 (187)
T ss_pred CcccCCCceeeEEEEECCCCEE
Confidence 86 458888886 4544
No 263
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.86 E-value=0.00029 Score=53.35 Aligned_cols=102 Identities=27% Similarity=0.394 Sum_probs=75.0
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHH-HHhC--CCeEEEEEecc-----ccHhHHHhcCC-
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAA-TVLK--GVATVAALDAN-----EHQSLAQEYGI- 100 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~-~~~~--~~i~~~~vd~~-----~~~~~~~~~~i- 100 (411)
.....|+.-+|+ +++.+.+.++|.|=... +-=+-+..+.+++ +... +.+.++.|-+. ++.+|+++|++
T Consensus 4 ~G~v~LD~~tFd-Kvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 4 KGCVPLDELTFD-KVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp TTSEEESTTHHH-HHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred Cceeeccceehh-heeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 346789999999 78888999999996443 3334556777777 4433 47899988775 56799999999
Q ss_pred -CcccEEEEEeCC-CCCccc--CCCCCcchhHHHHHHH
Q 015217 101 -RGFPTIKVFVPG-KPPVDY--QGARDVKPIAEFALQQ 134 (411)
Q Consensus 101 -~~~P~~~~~~~g-~~~~~~--~g~~~~~~l~~~~~~~ 134 (411)
..+|.+.+|..+ ....+| .|..+.++|..|+.++
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 578999999854 448888 8899999999999864
No 264
>PLN02412 probable glutathione peroxidase
Probab=97.86 E-value=0.00013 Score=60.63 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD 219 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~ 219 (411)
..++++|.||++||+.|+...+.+.++.++|+++ +.+..|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3578999999999999999999999999999974 888888764
No 265
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.86 E-value=0.00016 Score=55.33 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=71.0
Q ss_pred EeCccchhHHHhcCCCeEEEEE---ECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEeccccHhHHHhcCCCc----ccE
Q 015217 34 QLTPNNFKSKVLNANGVVLVEF---YAPWCGHCQALTPIWEKAATVLK-GVATVAALDANEHQSLAQEYGIRG----FPT 105 (411)
Q Consensus 34 ~l~~~~f~~~~~~~~~~~~v~f---~~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~~~~~~~~~~~i~~----~P~ 105 (411)
+++.++.. ... ..+..++++ |+..-..-..+...+.++|+.++ +++.|+.+|.++.....+.+|+.. .|+
T Consensus 3 ~~~~en~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~ 80 (111)
T cd03073 3 HRTKDNRA-QFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPV 80 (111)
T ss_pred eeccchHH-Hhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence 45666666 332 333333332 23344555678899999999999 799999999998888899999984 999
Q ss_pred EEEEeCCCCCcccCCCC-CcchhHHHHHHH
Q 015217 106 IKVFVPGKPPVDYQGAR-DVKPIAEFALQQ 134 (411)
Q Consensus 106 ~~~~~~g~~~~~~~g~~-~~~~l~~~~~~~ 134 (411)
+++...+.......+.. +.++|.+|+.+.
T Consensus 81 ~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 81 VAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 99987433223346677 888999998754
No 266
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.85 E-value=9.5e-05 Score=61.98 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=42.4
Q ss_pred EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (411)
Q Consensus 33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~ 89 (411)
..++++.+. ...-+++++||.|||+||+.|++ .+.|+++.+.+++ .+.+..+.|+
T Consensus 11 ~~~~G~~v~-Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 11 TTIDGEVTT-LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred ECCCCCEEe-HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 344544444 22235899999999999999974 8899999999975 5888899885
No 267
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.83 E-value=9.3e-05 Score=65.01 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=68.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-----------HhHHHhcCCCcccEEEEEeCCCC-
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-----------QSLAQEYGIRGFPTIKVFVPGKP- 114 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-----------~~~~~~~~i~~~P~~~~~~~g~~- 114 (411)
.++..+|+||.+.|+.|+++.|.+..+++.+. +.+..|+.|.. ...++++|+..+|++++...+..
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 46699999999999999999999999999875 45555555432 46889999999999999976533
Q ss_pred -CcccCCCCCcchhHHHHHHHH
Q 015217 115 -PVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 115 -~~~~~g~~~~~~l~~~~~~~~ 135 (411)
.-.-.|..+.++|.+-+....
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 223468999999988877654
No 268
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.82 E-value=7.9e-05 Score=54.23 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=53.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcC--CCcccEEEEEeCCCCCcccCCCCCc
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYG--IRGFPTIKVFVPGKPPVDYQGARDV 124 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~--i~~~P~~~~~~~g~~~~~~~g~~~~ 124 (411)
-++.|+.+||++|++....++++...+ ..+.+..+|.+.+ .++.+..+ ...+|++++ +|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence 478999999999999999999998765 3578888888764 24555555 478999754 665422 33
Q ss_pred chhHHHHHHH
Q 015217 125 KPIAEFALQQ 134 (411)
Q Consensus 125 ~~l~~~~~~~ 134 (411)
+++.+++.++
T Consensus 73 ~~~~~~~~~~ 82 (85)
T PRK11200 73 TDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHh
Confidence 5566666544
No 269
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.81 E-value=5.3e-05 Score=59.62 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=50.6
Q ss_pred eCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc---CCCcccEEEEEeC
Q 015217 35 LTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKVFVP 111 (411)
Q Consensus 35 l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~ 111 (411)
++++..........+..++.|+.+||+.|...-|.+.++++..+ .+.+-.+--+++.++..+| |...+|++++++.
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 34443332223456678999999999999999999999999865 5666666667777766654 7889999999965
Q ss_pred C-CCCccc
Q 015217 112 G-KPPVDY 118 (411)
Q Consensus 112 g-~~~~~~ 118 (411)
+ +.+.++
T Consensus 107 ~~~~lg~w 114 (129)
T PF14595_consen 107 DGKELGRW 114 (129)
T ss_dssp T--EEEEE
T ss_pred CCCEeEEE
Confidence 4 444444
No 270
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.80 E-value=9.4e-05 Score=61.67 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEE------EEEeCCC-----------------------------c
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKL------GHVDCDS-----------------------------E 221 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f------~~v~~~~-----------------------------~ 221 (411)
..++.+|.||+.||++|+.-.|.+.+++.. .+.+ ..||.++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 378999999999999999999999999653 1233 3334332 3
Q ss_pred hhHHhhCccccccEE-EEEcCCCCCcccccCCCCHHHHHH
Q 015217 222 KSLMSKFNVQGFPTI-LVFGADKDSPIPYEGARTAGAIES 260 (411)
Q Consensus 222 ~~l~~~~~v~~~P~i-~~~~~~~~~~~~y~g~~~~~~i~~ 260 (411)
..+...||+...|+. +++..++.....+.|..+.+++..
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 345668888999777 788777776778889988887766
No 271
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.77 E-value=0.00011 Score=59.40 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=45.1
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---HhHHHhcCCCccc
Q 015217 47 ANGVVLVEFYAPW-CGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFP 104 (411)
Q Consensus 47 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P 104 (411)
++++++|.||+.| |++|+...+.+.++.+.++ ++.++.|+.+.. .++.+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 5789999999999 6999999999999999986 578888888743 3445555654555
No 272
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.77 E-value=6.3e-05 Score=54.58 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=42.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----hHHhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~l~~~~~v~~~P~i~~ 238 (411)
++.|+++||++|+...+.+.++. ....+.+..++.+.+. .+.+.+|+..+|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999999877 3344677777765433 2666778889999864
No 273
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.76 E-value=0.00017 Score=59.07 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=37.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDC 218 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~ 218 (411)
..++++|.|+++||++|....+.+.++.+.+.+ .+.+..|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 356789999999999999999999999999986 588888876
No 274
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.73 E-value=0.0002 Score=55.02 Aligned_cols=67 Identities=22% Similarity=0.493 Sum_probs=46.2
Q ss_pred cCCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-----cH--hHHH--hcCCCcccEEEEE
Q 015217 46 NANGVVLVEFYAP-------WCGHCQALTPIWEKAATVLKGVATVAALDANE-----HQ--SLAQ--EYGIRGFPTIKVF 109 (411)
Q Consensus 46 ~~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-----~~--~~~~--~~~i~~~P~~~~~ 109 (411)
.++++++|+|+++ ||+.|....|.+.++....+++..++.+.+.. ++ .+-. ++++.++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 3568899999865 99999999999999998877777887777642 22 2333 4899999999888
Q ss_pred eCC
Q 015217 110 VPG 112 (411)
Q Consensus 110 ~~g 112 (411)
..+
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 655
No 275
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.73 E-value=0.00032 Score=61.67 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---------chhHHhhCccccccEEEEEcCCCCCccc
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------EKSLMSKFNVQGFPTILVFGADKDSPIP 248 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------~~~l~~~~~v~~~P~i~~~~~~~~~~~~ 248 (411)
++..+++||...|++|+.+.|++...++.++=.+..+.+|... +...++++|+..+|++++...+......
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 4478999999999999999999999999997444444444331 2568999999999999999766433322
Q ss_pred -ccCCCCHHHHHHHHHHHh
Q 015217 249 -YEGARTAGAIESFALEQL 266 (411)
Q Consensus 249 -y~g~~~~~~i~~fi~~~~ 266 (411)
-.|..+.++|.+-+....
T Consensus 230 v~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 230 LAYGFISQDELKERILNVL 248 (256)
T ss_pred EeeccCCHHHHHHHHHHHH
Confidence 258889999887766554
No 276
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.72 E-value=9.7e-05 Score=64.71 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=58.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE----------------------------------------
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL---------------------------------------- 86 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v---------------------------------------- 86 (411)
.++..++.|+-+.|++|+++++++.++.+. + +.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 356789999999999999999998887541 1 222111
Q ss_pred ----eccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHH
Q 015217 87 ----DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 87 ----d~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~ 133 (411)
+.+++.++++++||+++|+++ +.+|+. ..|..+.+.|.+++.+
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDE 229 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHH
Confidence 112334889999999999986 666753 4788899999888864
No 277
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.72 E-value=0.00018 Score=62.83 Aligned_cols=89 Identities=18% Similarity=0.096 Sum_probs=67.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---------cHhHHHhcCCCcccEEEEEeCCCC--C
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---------HQSLAQEYGIRGFPTIKVFVPGKP--P 115 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---------~~~~~~~~~i~~~P~~~~~~~g~~--~ 115 (411)
.++..|++||.+.|+.|.++.|.+..+++.+.=.+..+.+|-.- +...++++||..+|++++...+.. .
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 46699999999999999999999999999886444445554421 334678999999999999976542 2
Q ss_pred cccCCCCCcchhHHHHHHHH
Q 015217 116 VDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 116 ~~~~g~~~~~~l~~~~~~~~ 135 (411)
-.-.|..+.++|.+-+....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEeeccCCHHHHHHHHHHHH
Confidence 33468889888887776553
No 278
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.72 E-value=0.00023 Score=57.94 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=34.1
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217 49 GVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (411)
Q Consensus 49 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~ 89 (411)
++++|.|| ++||+.|....+.+.++.+.+++ ++.++.|..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 77777777 89999999999999999998864 5777777654
No 279
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.72 E-value=0.00013 Score=59.61 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=36.2
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD 219 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~ 219 (411)
.++++|.||++||+ |....+.+.++.++|++ .+.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 57899999999999 99999999999999986 4888888753
No 280
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.72 E-value=0.00017 Score=51.26 Aligned_cols=54 Identities=22% Similarity=0.465 Sum_probs=39.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhh-----CccccccEEEEEcCC
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK-----FNVQGFPTILVFGAD 242 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~-----~~v~~~P~i~~~~~~ 242 (411)
+++|+++||++|+.+.+.+.++. +.+..+|.+.+...... +++.++|+++ +.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVK-FADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCC
Confidence 57899999999999999887653 34456777766655555 3888999974 4443
No 281
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.71 E-value=0.00022 Score=57.40 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=36.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEecc
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLK-GVATVAALDAN 89 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~i~~~~vd~~ 89 (411)
.+++++|.|| +.||+.|....+.+.++.+.++ +.+.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6889999999 7899999999999999999885 35777777665
No 282
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.67 E-value=0.00016 Score=58.37 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=37.6
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEecc
Q 015217 47 ANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKG----VATVAALDAN 89 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~i~~~~vd~~ 89 (411)
++++++|.||++||+. |....+.+.++.+.+.+ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6889999999999998 99999999999998875 3888877764
No 283
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.64 E-value=0.00054 Score=52.88 Aligned_cols=92 Identities=5% Similarity=0.003 Sum_probs=66.2
Q ss_pred HhcCCCeEEEEEeCC----CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEEc---CCCC
Q 015217 174 VLKSKDLWIVEFFAP----WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFG---ADKD 244 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~----~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~---~~~~ 244 (411)
..++.+..+|+++++ ||..|+.... =.++.+.++.++.+...|.+.. ..++..+++.++|++.++. +..+
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 456678999999999 7777754421 1455555666777777776543 4688899999999999993 2222
Q ss_pred CcccccCCCCHHHHHHHHHHHh
Q 015217 245 SPIPYEGARTAGAIESFALEQL 266 (411)
Q Consensus 245 ~~~~y~g~~~~~~i~~fi~~~~ 266 (411)
...+..|..+++++...+....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 3456789999999988877654
No 284
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.64 E-value=0.00031 Score=50.86 Aligned_cols=93 Identities=24% Similarity=0.354 Sum_probs=75.2
Q ss_pred cchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc--cHhHHHhcCCC----ccc-EEEEEe
Q 015217 38 NNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE--HQSLAQEYGIR----GFP-TIKVFV 110 (411)
Q Consensus 38 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~--~~~~~~~~~i~----~~P-~~~~~~ 110 (411)
.+|. .++.....++|.|..+.-..- .....+.++|+..+|.=.++-|||.+ ...+|+++.+. --| .+.-|.
T Consensus 10 KdfK-KLLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK 87 (112)
T cd03067 10 KDFK-KLLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK 87 (112)
T ss_pred HHHH-HHHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence 6788 677778888888887765444 44458899999999987888999986 77899999998 444 466778
Q ss_pred CCCCCcccCCCCCcchhHHHHH
Q 015217 111 PGKPPVDYQGARDVKPIAEFAL 132 (411)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~~~ 132 (411)
+|..-..|.-..+..+|+.|+.
T Consensus 88 dG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 88 DGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred CCCccccccchhhHHHHHHHhh
Confidence 8988889999999999998885
No 285
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.63 E-value=0.00037 Score=54.70 Aligned_cols=67 Identities=19% Similarity=0.486 Sum_probs=53.2
Q ss_pred CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc---------------------hhHHhhCccc--
Q 015217 177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE---------------------KSLMSKFNVQ-- 231 (411)
Q Consensus 177 ~~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~---------------------~~l~~~~~v~-- 231 (411)
.+++.+|.||.. ||+.|....+.+.++...++. .+.+..|+.+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 457899999998 999999999999999999987 488888876543 2366667776
Q ss_pred ----cccEEEEEcCCC
Q 015217 232 ----GFPTILVFGADK 243 (411)
Q Consensus 232 ----~~P~i~~~~~~~ 243 (411)
.+|+++++..++
T Consensus 104 ~~~~~~p~~~lid~~g 119 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDG 119 (124)
T ss_dssp TTSEESEEEEEEETTS
T ss_pred cCCceEeEEEEECCCC
Confidence 677777776655
No 286
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.60 E-value=0.00082 Score=51.12 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=67.2
Q ss_pred cEEeCc-cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEc
Q 015217 162 SIELNS-SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFG 240 (411)
Q Consensus 162 v~~l~~-~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~ 240 (411)
+..+++ +++..++.......+|.|+...- ......|.++|..++..+.|+... +..+.+++++.. |.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~---~~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEE---DPAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCC---CHHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEEC
Confidence 344544 44555443332677777776532 257889999999999999998744 567888888875 8888883
Q ss_pred ------CCCCCcccccCC-CCHHH-HHHHHHHH
Q 015217 241 ------ADKDSPIPYEGA-RTAGA-IESFALEQ 265 (411)
Q Consensus 241 ------~~~~~~~~y~g~-~~~~~-i~~fi~~~ 265 (411)
.-.+....|.|. .+..+ |.+|++.|
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 333446788887 67656 99998754
No 287
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.60 E-value=0.0005 Score=60.12 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---------chhHHhhCccccccEEEEEcCCCCCccc
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---------EKSLMSKFNVQGFPTILVFGADKDSPIP 248 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---------~~~l~~~~~v~~~P~i~~~~~~~~~~~~ 248 (411)
+...+++||.+.|++|+.+.|++...++.++=.+..+.+|... +...++++|+..+|++++...+......
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 3467999999999999999999999999997555555555321 3457789999999999999766533322
Q ss_pred -ccCCCCHHHHHHHHHHHh
Q 015217 249 -YEGARTAGAIESFALEQL 266 (411)
Q Consensus 249 -y~g~~~~~~i~~fi~~~~ 266 (411)
-.|..+.++|.+-+....
T Consensus 223 v~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EeeccCCHHHHHHHHHHHH
Confidence 257888888877665543
No 288
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.59 E-value=0.00032 Score=56.39 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=56.2
Q ss_pred CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------chhHHhhCccccc-
Q 015217 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------EKSLMSKFNVQGF- 233 (411)
Q Consensus 178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------~~~l~~~~~v~~~- 233 (411)
.++++|.|| +.||+.|....+.+.++...+.. .+.+..|..+. +..+++.||+...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 567888888 58999999999999999988875 46666665443 2345666666665
Q ss_pred --------cEEEEEcCCCCCcccccCCCCHHHH
Q 015217 234 --------PTILVFGADKDSPIPYEGARTAGAI 258 (411)
Q Consensus 234 --------P~i~~~~~~~~~~~~y~g~~~~~~i 258 (411)
|+.+++..++.....+.|....+++
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~ 135 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA 135 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence 6777776555555556665544443
No 289
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.57 E-value=0.00077 Score=48.85 Aligned_cols=94 Identities=19% Similarity=0.329 Sum_probs=70.2
Q ss_pred cchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHhhCccc----cccE-EEEEc
Q 015217 168 SNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS--EKSLMSKFNVQ----GFPT-ILVFG 240 (411)
Q Consensus 168 ~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~--~~~l~~~~~v~----~~P~-i~~~~ 240 (411)
.+|..+ .+..+.++|+|..+.- .-......|.++|....+.-.++.|||.+ .+.||+++.+. .-|. +.-|+
T Consensus 10 KdfKKL-LRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK 87 (112)
T cd03067 10 KDFKKL-LRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK 87 (112)
T ss_pred HHHHHH-HhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence 566664 5556667777776542 22455678999999999999999999987 67899999988 4454 44455
Q ss_pred CCCCCcccccCCCCHHHHHHHHHH
Q 015217 241 ADKDSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 241 ~~~~~~~~y~g~~~~~~i~~fi~~ 264 (411)
+| .-+..|+-..+..+|++|++.
T Consensus 88 dG-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 88 DG-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CC-CccccccchhhHHHHHHHhhC
Confidence 54 457888888999999999763
No 290
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.54 E-value=0.00031 Score=52.64 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=64.9
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPW--CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
.....++.++++ ..+......+++|.... ++.+....-.+-++.+.+.+.+..+.+.-..+..+..+||+..+|+++
T Consensus 9 ~g~~~vd~~~ld-~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLD-AFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHH-HHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHH-HHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 456788888888 55565666655555433 344444555788888888898888888888889999999999999999
Q ss_pred EEeCCCCCcccCCC
Q 015217 108 VFVPGKPPVDYQGA 121 (411)
Q Consensus 108 ~~~~g~~~~~~~g~ 121 (411)
++++|+.+....|-
T Consensus 88 f~R~g~~lG~i~gi 101 (107)
T PF07449_consen 88 FFRDGRYLGAIEGI 101 (107)
T ss_dssp EEETTEEEEEEESS
T ss_pred EEECCEEEEEecCe
Confidence 99999764444443
No 291
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.54 E-value=0.00014 Score=62.24 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=53.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE----------------------------------------
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL---------------------------------------- 86 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v---------------------------------------- 86 (411)
.++..++.|+.+.|++|+++++.+.+ ..+++.+..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 45789999999999999999998876 1222222111
Q ss_pred -----eccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHH
Q 015217 87 -----DANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEF 130 (411)
Q Consensus 87 -----d~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~ 130 (411)
+.+++..+++++||+++|+++ +.+|.. ..|..+.+.|.++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~ 196 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEAL 196 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhh
Confidence 112344789999999999986 776653 4677776666654
No 292
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.53 E-value=0.00084 Score=56.72 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred CC-eEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCC
Q 015217 178 KD-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGK-VKLGHVDCD 219 (411)
Q Consensus 178 ~~-~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~f~~v~~~ 219 (411)
.+ ++++.++++||++|+...|.+.++.+.|+++ +.+..|+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 44 4456679999999999999999999999874 888888764
No 293
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.00065 Score=51.26 Aligned_cols=77 Identities=18% Similarity=0.351 Sum_probs=66.6
Q ss_pred cchhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC
Q 015217 38 NNFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 38 ~~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 114 (411)
...++.+. ...+.++|.|...|.+.|.++...+.++++...+-..++-+|.++-+.+.+-|++...|++++|-+++-
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 34454443 356799999999999999999999999999999877888999999999999999999999999977654
No 294
>PRK15000 peroxidase; Provisional
Probab=97.51 E-value=0.00068 Score=58.00 Aligned_cols=86 Identities=10% Similarity=0.184 Sum_probs=60.2
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217 47 ANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (411)
Q Consensus 47 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~ 96 (411)
+++++++.||+. ||+.|....+.+.+..++++. ++.++.|.++. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 899999999999999999874 46666665541 225677
Q ss_pred hcCCC------cccEEEEEeC-CCCCcccCCC----CCcchhHHHHH
Q 015217 97 EYGIR------GFPTIKVFVP-GKPPVDYQGA----RDVKPIAEFAL 132 (411)
Q Consensus 97 ~~~i~------~~P~~~~~~~-g~~~~~~~g~----~~~~~l~~~~~ 132 (411)
.||+. ..|+.+++.+ |.....+.+. ++.+++.+.+.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 78887 6899888874 5433333333 34445555543
No 295
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.50 E-value=0.00019 Score=56.46 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=48.7
Q ss_pred eCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC---ccccccEEEEEcC
Q 015217 165 LNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF---NVQGFPTILVFGA 241 (411)
Q Consensus 165 l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~---~v~~~P~i~~~~~ 241 (411)
++++..........+..++.|..+|||.|....|.+.++++... .+.+-.+.-+.+.++..+| |...+|+++++..
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 44444444323345578888999999999999999999999854 5666666666677777765 5678999999966
Q ss_pred CCC
Q 015217 242 DKD 244 (411)
Q Consensus 242 ~~~ 244 (411)
+++
T Consensus 107 ~~~ 109 (129)
T PF14595_consen 107 DGK 109 (129)
T ss_dssp T--
T ss_pred CCC
Confidence 544
No 296
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.50 E-value=0.0008 Score=56.77 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc-------------------------ccHhHHHhcC
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDAN-------------------------EHQSLAQEYG 99 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~-------------------------~~~~~~~~~~ 99 (411)
+++++++.|| +.||+.|....+.+.+..+++.+ ++.+..|..+ .+..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4678999999 99999999999999999998864 4556555543 2347888999
Q ss_pred CC----cc--cEEEEEeC-CCCCccc----CCCCCcchhHHHHH
Q 015217 100 IR----GF--PTIKVFVP-GKPPVDY----QGARDVKPIAEFAL 132 (411)
Q Consensus 100 i~----~~--P~~~~~~~-g~~~~~~----~g~~~~~~l~~~~~ 132 (411)
+. +. |+.++++. |+....+ ...++.+++.+.+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 83 56 88888864 4432222 22345666666654
No 297
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.47 E-value=0.00068 Score=60.19 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=57.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec---------------------------------------
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA--------------------------------------- 88 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~--------------------------------------- 88 (411)
.+.+++.|+-+.|++|+++++.+..+.+. +++.+..+-.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 45789999999999999999998876653 3333321110
Q ss_pred -----------cccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217 89 -----------NEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 89 -----------~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
+++.++.+++|++++|++++-+..+.+....|..+++.|.+.+
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHh
Confidence 0122578889999999986655323345678888888777765
No 298
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.44 E-value=0.00083 Score=57.67 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=60.3
Q ss_pred CCCeEE-EEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---------------------------ccHhHHHh
Q 015217 47 ANGVVL-VEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN---------------------------EHQSLAQE 97 (411)
Q Consensus 47 ~~~~~~-v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---------------------------~~~~~~~~ 97 (411)
+++.++ +.|++.||+.|....+.+.+..+.+++ ++.+..|.++ .+..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 456544 468999999999999999999988874 4556665554 12367888
Q ss_pred cCCC------cccEEEEEeCCCCCc-c--c--CCCCCcchhHHHHHHH
Q 015217 98 YGIR------GFPTIKVFVPGKPPV-D--Y--QGARDVKPIAEFALQQ 134 (411)
Q Consensus 98 ~~i~------~~P~~~~~~~g~~~~-~--~--~g~~~~~~l~~~~~~~ 134 (411)
||+. .+|+.+++.+++.+. . | .+.++.+++.+.+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8884 589988887544321 1 1 3456777777666543
No 299
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.00076 Score=50.57 Aligned_cols=65 Identities=18% Similarity=0.395 Sum_probs=52.4
Q ss_pred CCCeEEEEEECC--------CChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-------hHHHhcCC-CcccEEEEEe
Q 015217 47 ANGVVLVEFYAP--------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-------SLAQEYGI-RGFPTIKVFV 110 (411)
Q Consensus 47 ~~~~~~v~f~~~--------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-------~~~~~~~i-~~~P~~~~~~ 110 (411)
+++-++|+|+++ ||+.|.+..|.+.++.+....++.|+.++..+-+ .+-...++ .++||+.=+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 556699999875 8999999999999999987888999999886432 45556666 8999987776
Q ss_pred C
Q 015217 111 P 111 (411)
Q Consensus 111 ~ 111 (411)
.
T Consensus 104 ~ 104 (128)
T KOG3425|consen 104 R 104 (128)
T ss_pred C
Confidence 4
No 300
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.42 E-value=0.0019 Score=48.72 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=64.7
Q ss_pred ceEeCChhHHHHhcC-CccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEee
Q 015217 275 VTELTSQDVMEEKCG-SAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALN 343 (411)
Q Consensus 275 v~~l~~~~~~~~~~~-~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~ 343 (411)
+..+++.+.++.+.. ...+++ ..+.|..+|..+|+. +.|+...+ ..+...+++. .|.+++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d-~~F~~~~~---~~~~~~~~~~---~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPY-IKFFATFD---SKVAKKLGLK---MNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcC-CEEEEECc---HHHHHHcCCC---CCcEEEeC
Confidence 355666666676665 444333 347999999999988 89987776 6777888765 78899987
Q ss_pred cCCCccccC-CCCCChhHHHHHHHHH
Q 015217 344 VKKGVYTPL-KSAFELEHIVEFVKEA 368 (411)
Q Consensus 344 ~~~~~~~~~-~~~~~~~~i~~fi~~~ 368 (411)
........| .|.++.+.|.+||...
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 545555668 7889999999999754
No 301
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.36 E-value=0.0019 Score=53.26 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=61.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEeccc--c-------------------------------
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVL--KGVATVAALDANE--H------------------------------- 91 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~i~~~~vd~~~--~------------------------------- 91 (411)
..+++|+.|+...|++|+.+++.+.++.+.+ .+++.+...+.-. .
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4678999999999999999999999999998 6777776664410 0
Q ss_pred -----------------------------------HhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHH
Q 015217 92 -----------------------------------QSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFAL 132 (411)
Q Consensus 92 -----------------------------------~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~ 132 (411)
.+.++++||.++|++++ +|+. +.|..+.+.+.++|.
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id 161 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELID 161 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHc
Confidence 05567789999999877 6654 477888888877765
No 302
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.36 E-value=0.001 Score=51.08 Aligned_cols=66 Identities=20% Similarity=0.434 Sum_probs=46.2
Q ss_pred CCCeEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHh--hCccccccEEEEEc
Q 015217 177 SKDLWIVEFFA-------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMS--KFNVQGFPTILVFG 240 (411)
Q Consensus 177 ~~~~~lv~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~l~~--~~~v~~~P~i~~~~ 240 (411)
+.++.+|+|++ +|||.|....|.+.++-........+..|.....+ .... ++++..+||++-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 45688888885 59999999999999998887777888888765432 2444 58999999999986
Q ss_pred CC
Q 015217 241 AD 242 (411)
Q Consensus 241 ~~ 242 (411)
.+
T Consensus 98 ~~ 99 (119)
T PF06110_consen 98 TG 99 (119)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 303
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.35 E-value=0.001 Score=44.63 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=38.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEE
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKV 108 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~ 108 (411)
++.|+.+||++|+.....|.+ .++.+..+|.+.+++ +.+..|...+|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999999888832 236778888886643 444459999999765
No 304
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.33 E-value=0.00083 Score=46.92 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=37.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHh----cCCCcccEEEE
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE----YGIRGFPTIKV 108 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~----~~i~~~P~~~~ 108 (411)
++.|+++||++|.++...+.+. .+.+..+|.+.+....+. .+..++|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988777652 356667777765544333 37889999865
No 305
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.31 E-value=0.0015 Score=53.31 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=28.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLK 78 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 78 (411)
..++.++.|+.++|++|+.+.+.+.++...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 46789999999999999999999999877654
No 306
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.30 E-value=0.011 Score=58.80 Aligned_cols=166 Identities=13% Similarity=0.113 Sum_probs=106.1
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI 258 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i 258 (411)
.+.+++|.. .|+.|.++...+++++..- +++.+...+ .. ...|++.+.+++....++|.|-..-.++
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~~i~~~~~~---~~--------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 86 (517)
T PRK15317 20 PIELVASLD-DSEKSAELKELLEEIASLS-DKITVEEDS---LD--------VRKPSFSITRPGEDTGVRFAGIPMGHEF 86 (517)
T ss_pred CEEEEEEeC-CCchHHHHHHHHHHHHHhC-CceEEEEcc---CC--------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence 344555555 7999999999999998774 566664422 11 2469999987666667999998888899
Q ss_pred HHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccE-EE------eHH----HHHHHHHHhhcCccEEEEecCCCchhhHH
Q 015217 259 ESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAI-CF------YLE----MLLSVAEKFKRGHYSFVWAAAGKQPDLEN 327 (411)
Q Consensus 259 ~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~------~~~----~~~~~a~~~~~~~~~f~~i~~~~~~~~~~ 327 (411)
..|+...+.-....+.+.+-+ .+.+..+..+..+ .| +++ .+.++|.... .+.+-.+|...++++++
T Consensus 87 ~s~i~~i~~~~~~~~~l~~~~-~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~~~~~~ 163 (517)
T PRK15317 87 TSLVLALLQVGGHPPKLDQEV-IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALFQDEVE 163 (517)
T ss_pred HHHHHHHHHhcCCCCCCCHHH-HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhCHhHHH
Confidence 999887765443333331111 1223333333322 22 444 4444544333 48888999999999999
Q ss_pred HhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHH
Q 015217 328 RVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKE 367 (411)
Q Consensus 328 ~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~ 367 (411)
++++.. .|++++ + +.. .+.|..+.+++.+.+..
T Consensus 164 ~~~v~~--VP~~~i-~--~~~--~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 164 ARNIMA--VPTVFL-N--GEE--FGQGRMTLEEILAKLDT 196 (517)
T ss_pred hcCCcc--cCEEEE-C--CcE--EEecCCCHHHHHHHHhc
Confidence 999986 999987 2 222 35566666666655543
No 307
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.29 E-value=0.0012 Score=53.61 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchh
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSEKS 223 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~ 223 (411)
+..++++|++.||+.|+...+.+.++.+.+.. .+.+..|+.+....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 44555555699999999999999999999975 48888888765543
No 308
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.29 E-value=0.0009 Score=48.61 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=55.0
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCc--cccccEEEEEcCCCCCcccccCCCC
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFN--VQGFPTILVFGADKDSPIPYEGART 254 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~--v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (411)
.++.|+.+||+.|+...+.+.+++..+ ..+.+..+|.+.+ .++.+..+ +..+|+|++ +++ +-| .
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi---~g~----~ig--g 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV---DQK----HIG--G 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE---CCE----EEc--C
Confidence 478899999999999999999999765 3577777777654 24555555 478999875 221 123 3
Q ss_pred HHHHHHHHHHHh
Q 015217 255 AGAIESFALEQL 266 (411)
Q Consensus 255 ~~~i~~fi~~~~ 266 (411)
.+++.++...++
T Consensus 72 ~~~~~~~~~~~~ 83 (85)
T PRK11200 72 CTDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHHhc
Confidence 578888887765
No 309
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.28 E-value=0.00064 Score=48.84 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=58.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCC--CCCcccCCCCCcchhHH
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPG--KPPVDYQGARDVKPIAE 129 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g--~~~~~~~g~~~~~~l~~ 129 (411)
+++|+.++|.-|..+...+..+.... .+.+-.||++.++++..+|+. .+|.+.+-..+ .......+..+.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 78999999999999999888866543 488999999999999999995 79996552211 11344556788888888
Q ss_pred HHH
Q 015217 130 FAL 132 (411)
Q Consensus 130 ~~~ 132 (411)
|++
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 764
No 310
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0031 Score=53.23 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=66.5
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCC
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGAR 253 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~ 253 (411)
+....+..++.|++.||..|+.+..++..++..+ ..+.|...+.+..++++..+.+...|..+.+..+.. ..+..|..
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~-v~~l~~~~ 90 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK-VDRLSGAD 90 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh-hhhhhccC
Confidence 3446678899999999999999999999999999 679999999999999999999999999999865442 44555544
Q ss_pred CH
Q 015217 254 TA 255 (411)
Q Consensus 254 ~~ 255 (411)
..
T Consensus 91 ~~ 92 (227)
T KOG0911|consen 91 PP 92 (227)
T ss_pred cH
Confidence 43
No 311
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.27 E-value=0.00078 Score=49.04 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=50.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc----HhHHHhcCC--CcccEEEEEeCCCCCcccCCCCCcc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH----QSLAQEYGI--RGFPTIKVFVPGKPPVDYQGARDVK 125 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~----~~~~~~~~i--~~~P~~~~~~~g~~~~~~~g~~~~~ 125 (411)
++.|+.+||++|.+....|.++..... .+.+..+|.+.+ .++.+..|- ..+|++++ +|+.+ ...+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------gG~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------GGCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------cCHH
Confidence 688999999999999999988875543 366777777643 356666664 78999754 55431 2335
Q ss_pred hhHHHHHH
Q 015217 126 PIAEFALQ 133 (411)
Q Consensus 126 ~l~~~~~~ 133 (411)
+|.++..+
T Consensus 73 dl~~~~~~ 80 (86)
T TIGR02183 73 DFEQLVKE 80 (86)
T ss_pred HHHHHHHh
Confidence 66666654
No 312
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.26 E-value=0.0016 Score=52.84 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCcEEeCc--cchHHHHhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCCCchhHHhhC------
Q 015217 160 NESIELNS--SNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMSKF------ 228 (411)
Q Consensus 160 ~~v~~l~~--~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~l~~~~------ 228 (411)
.+|....- +.+.. ..+.+++.+|.++.+||..|+.+.. .| .++|..+..++.-+.||.++.+++...|
T Consensus 18 ~~V~W~~w~~ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~ 96 (163)
T PF03190_consen 18 NPVNWQPWGEEALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQA 96 (163)
T ss_dssp SSS--B-SSHHHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHH
Confidence 44444443 44554 4777899999999999999999976 55 7888888888888999999999988887
Q ss_pred --ccccccEEEEEcCCCCCcc---ccc------CCCCHHHHHHHHHHHhh
Q 015217 229 --NVQGFPTILVFGADKDSPI---PYE------GARTAGAIESFALEQLE 267 (411)
Q Consensus 229 --~v~~~P~i~~~~~~~~~~~---~y~------g~~~~~~i~~fi~~~~~ 267 (411)
|..+.|+.+++.+.+. ++ .|- |.....++..-|.+.|.
T Consensus 97 ~~~~gGwPl~vfltPdg~-p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~ 145 (163)
T PF03190_consen 97 MSGSGGWPLTVFLTPDGK-PFFGGTYFPPEDRYGRPGFLQLLERIAELWK 145 (163)
T ss_dssp HHS---SSEEEEE-TTS--EEEEESS--SS-BTTB--HHHHHHHHHHHHH
T ss_pred hcCCCCCCceEEECCCCC-eeeeeeecCCCCCCCCccHHHHHHHHHHHHH
Confidence 6778999999977653 22 222 22345567777766664
No 313
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.25 E-value=0.0023 Score=53.55 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=58.5
Q ss_pred CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hhHHhh
Q 015217 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDSE----------------------------KSLMSK 227 (411)
Q Consensus 178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~~----------------------------~~l~~~ 227 (411)
.+.++|.|| +.||+.|....+.+.++++.|.+ .+.+..|+++.. ..+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 478888998 79999999999999999999975 466666655432 234555
Q ss_pred Cccc------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHHH
Q 015217 228 FNVQ------GFPTILVFGADKDSPIPYEG----ARTAGAIESFALE 264 (411)
Q Consensus 228 ~~v~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~~ 264 (411)
||+. ..|+.+++..++.....+.+ ..+.+++.+.|..
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 6664 35678888766644444422 2345566666644
No 314
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.21 E-value=0.00097 Score=47.99 Aligned_cols=56 Identities=25% Similarity=0.463 Sum_probs=41.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----hHHHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----~~~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|+++||++|+.+.+.+.++.. .+.+..++.+.+. .+.+..|...+|+++ .+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 588999999999999999888765 3456666665442 355567889999963 3554
No 315
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.18 E-value=0.0029 Score=53.64 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHhhCcc
Q 015217 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS-------------------------EKSLMSKFNV 230 (411)
Q Consensus 178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~-------------------------~~~l~~~~~v 230 (411)
.++++|.|| +.||+.|....+.+.++...|.+ .+.+..|+++. +..+++.||+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 568899999 99999999999999999998865 35555555432 2356677777
Q ss_pred c------cccEEEEEcCCCCCcccccC----CCCHHHHHHHHH
Q 015217 231 Q------GFPTILVFGADKDSPIPYEG----ARTAGAIESFAL 263 (411)
Q Consensus 231 ~------~~P~i~~~~~~~~~~~~y~g----~~~~~~i~~fi~ 263 (411)
. ..|+.+++..++.....+.+ ....+++.+.|.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 5 34888888655533332211 235666666653
No 316
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.18 E-value=0.0035 Score=52.10 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 015217 178 KDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDS 220 (411)
Q Consensus 178 ~~~~lv~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~ 220 (411)
.++++|.||+.| |++|....+.+.++++.+. .+.+..|+.+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCC
Confidence 568999999999 9999999999999999984 57777776554
No 317
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.15 E-value=0.0014 Score=46.79 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=43.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc---HhHHHhcCCCcccEEEEEeCCC
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH---QSLAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~ 113 (411)
+.+.-++.|+.+||++|++....|.+. .+.+..+|++++ ..+.+..|...+|++++ +|+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 455668899999999999999888642 356666777655 34555678899999754 554
No 318
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.14 E-value=0.0015 Score=45.66 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhc---CCCcccEEEE
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEY---GIRGFPTIKV 108 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~---~i~~~P~~~~ 108 (411)
+..|+.++|++|++....|++ ..+.+..+|+++++.....+ |...+|++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 467899999999999988874 35677888888777555544 8889999754
No 319
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.13 E-value=0.0054 Score=53.08 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=51.2
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217 47 ANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE 97 (411)
Q Consensus 47 ~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~ 97 (411)
.++. +|+.|++.||+.|....+.+.++...+.. ++.++.|.++. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3554 57899999999999999999999999864 46666666653 2357788
Q ss_pred cCCC-------cccEEEEEeC-CCC
Q 015217 98 YGIR-------GFPTIKVFVP-GKP 114 (411)
Q Consensus 98 ~~i~-------~~P~~~~~~~-g~~ 114 (411)
||+. ..|+++++.. |+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~I 131 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTI 131 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEE
Confidence 8873 5799888875 443
No 320
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.12 E-value=0.003 Score=47.12 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=56.7
Q ss_pred ccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCC-cccEEEEE
Q 015217 37 PNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIR-GFPTIKVF 109 (411)
Q Consensus 37 ~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~-~~P~~~~~ 109 (411)
.++++ .+++. .++++|+=+++.|+-.......+++......+.+.++.+|.-+.+ .+++++||. ..|.++++
T Consensus 7 ~eql~-~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 7 EEQLE-EILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp HHHHH-HHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred HHHHH-HHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 35666 44444 789999999999999999999999999988877899999998765 678999997 56999999
Q ss_pred eCCCC
Q 015217 110 VPGKP 114 (411)
Q Consensus 110 ~~g~~ 114 (411)
++|+.
T Consensus 86 ~~g~~ 90 (105)
T PF11009_consen 86 KNGKV 90 (105)
T ss_dssp ETTEE
T ss_pred ECCEE
Confidence 99975
No 321
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.12 E-value=0.0026 Score=45.70 Aligned_cols=79 Identities=15% Similarity=0.293 Sum_probs=58.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC-CCcccccCCCCHHHHHH
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK-DSPIPYEGARTAGAIES 260 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~-~~~~~y~g~~~~~~i~~ 260 (411)
+++|..+.|.-|......+..+..... +.+-.||.++++.+..+|+. .+|.+.+-.... .......+.++.+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 688999999999999999988765544 88899999999999999996 589766522111 11334456788999988
Q ss_pred HHH
Q 015217 261 FAL 263 (411)
Q Consensus 261 fi~ 263 (411)
|+.
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 863
No 322
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.12 E-value=0.004 Score=47.12 Aligned_cols=85 Identities=15% Similarity=0.293 Sum_probs=60.1
Q ss_pred eEeCChhHHHHhcCCccEEE----------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecC
Q 015217 276 TELTSQDVMEEKCGSAAICF----------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK 345 (411)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~ 345 (411)
.++++.+.++.+.....+++ ..+.|..+|..+|+. +.|+.... ..++..+++ .|.+++|+|.
T Consensus 3 ~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d-~~F~~~~~---~~~~~~~~~----~~~ivl~~p~ 74 (104)
T cd03069 3 VELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRES-FRFAHTSD---KQLLEKYGY----GEGVVLFRPP 74 (104)
T ss_pred cccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhc-CEEEEECh---HHHHHhcCC----CCceEEEech
Confidence 34555555555444333222 347899999999988 89988776 677788876 4678888652
Q ss_pred ------CCccccCCCCCChhHHHHHHHHH
Q 015217 346 ------KGVYTPLKSAFELEHIVEFVKEA 368 (411)
Q Consensus 346 ------~~~~~~~~~~~~~~~i~~fi~~~ 368 (411)
......|+|.++.+.|.+||...
T Consensus 75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 24445689999999999999764
No 323
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.09 E-value=0.0016 Score=48.90 Aligned_cols=83 Identities=13% Similarity=0.261 Sum_probs=63.0
Q ss_pred CCcEEeCccchHHHHhcCCCeEEEEEeCC--CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 160 NESIELNSSNFDELVLKSKDLWIVEFFAP--WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 160 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~--~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
.....++..++..++ ..+...+++|..+ .++.+....-++-++.+.|.+.+..+.+.-..+..+..+||+...|+++
T Consensus 9 ~g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 467888999999975 4455555555543 2455566666899999999999988888867788999999999999999
Q ss_pred EEcCCC
Q 015217 238 VFGADK 243 (411)
Q Consensus 238 ~~~~~~ 243 (411)
+++++.
T Consensus 88 f~R~g~ 93 (107)
T PF07449_consen 88 FFRDGR 93 (107)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 999865
No 324
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.07 E-value=0.001 Score=54.45 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=68.8
Q ss_pred CCcEEeC-ccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 160 NESIELN-SSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 160 ~~v~~l~-~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
....++. ..+|.+... ...-+++.||-+.-..|+-+-..++.+|+.+-+ ..|..||....+-++.+++|.-+|++.+
T Consensus 66 G~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred ceEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 3445555 567777543 445578899999888999999999999999775 8999999999999999999999999999
Q ss_pred EcCCC
Q 015217 239 FGADK 243 (411)
Q Consensus 239 ~~~~~ 243 (411)
|+++.
T Consensus 144 ~k~g~ 148 (211)
T KOG1672|consen 144 FKNGK 148 (211)
T ss_pred EEcCE
Confidence 98876
No 325
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.06 E-value=0.0037 Score=52.42 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=33.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEE
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVA 84 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~ 84 (411)
.+++.++.|+...|++|+.+++.+.++.+.+++++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 57899999999999999999999999998887665553
No 326
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.04 E-value=0.0026 Score=51.22 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=37.5
Q ss_pred CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcCC----eEEEEEeCCC
Q 015217 177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKGK----VKLGHVDCDS 220 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~~~----~~f~~v~~~~ 220 (411)
..++++|.|+++||++ |....+.+.++...+..+ +.+..|+.+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4578999999999998 999999999999999763 8888887653
No 327
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.02 E-value=0.005 Score=54.57 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=58.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~ 96 (411)
+++++++.|| +.||+.|....+.+.+..+.+++ ++.++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5667777777 89999999999999999998864 35555555442 236788
Q ss_pred hcCCC-----cccEEEEEe-CCCCCccc----CCCCCcchhHHHHH
Q 015217 97 EYGIR-----GFPTIKVFV-PGKPPVDY----QGARDVKPIAEFAL 132 (411)
Q Consensus 97 ~~~i~-----~~P~~~~~~-~g~~~~~~----~g~~~~~~l~~~~~ 132 (411)
.||+. ..|+.++++ +|+....+ ...++.+++.+.+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 89985 479988886 45432222 23345555555543
No 328
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.01 E-value=0.006 Score=46.97 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=59.8
Q ss_pred chhHHHh-cCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccE-EEEEeCCC
Q 015217 39 NFKSKVL-NANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPT-IKVFVPGK 113 (411)
Q Consensus 39 ~f~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~-~~~~~~g~ 113 (411)
..++.+. +.++.++|.|...|-+.|.++...+.++++..+.-..++.+|.++-+.+.+-|.+. -|. ++||-.++
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 3444443 46889999999999999999999999999999988899999999999999999999 674 66663443
No 329
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.0053 Score=46.49 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADK 243 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~ 243 (411)
..+.+++-|..+|.+.|-.+-..+..++....+-..++-++.++-+++.+-|++...|++++|-++.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 4568999999999999999999999999999998888999999999999999999999999986554
No 330
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.98 E-value=0.036 Score=55.08 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=106.4
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHH
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAI 258 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i 258 (411)
.+.++.|.. .|+.|.++...+++++..- +++.+...+.+ ....|++.+..++....++|.|-..-.++
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 87 (515)
T TIGR03140 20 PVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGGHEF 87 (515)
T ss_pred CEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCcHHH
Confidence 344555655 6899999999999988764 56766443311 13469999987665557999998888888
Q ss_pred HHHHHHHhhhcCCCCCceEeCChhHHHHhcCCccE-EE------eHHH----HHHHHHHhhcCccEEEEecCCCchhhHH
Q 015217 259 ESFALEQLETNVAPPEVTELTSQDVMEEKCGSAAI-CF------YLEM----LLSVAEKFKRGHYSFVWAAAGKQPDLEN 327 (411)
Q Consensus 259 ~~fi~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~-~~------~~~~----~~~~a~~~~~~~~~f~~i~~~~~~~~~~ 327 (411)
..|+...+......+.+.+-+ .+.+..+..+..+ .| +++. +.++|.... .+..-.+|...++++++
T Consensus 88 ~s~i~~i~~~~~~~~~l~~~~-~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~ 164 (515)
T TIGR03140 88 TSLVLAILQVGGHGPKLDEGI-IDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVE 164 (515)
T ss_pred HHHHHHHHHhcCCCCCCCHHH-HHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHH
Confidence 888887665443333331111 1223333333322 22 4444 444444433 47788899999999999
Q ss_pred HhCCCCCCCCeEEEeecCCCccccCCCCCChhHHHHHHHHH
Q 015217 328 RVGVGGYGYPALVALNVKKGVYTPLKSAFELEHIVEFVKEA 368 (411)
Q Consensus 328 ~f~~~~~~~P~l~v~~~~~~~~~~~~~~~~~~~i~~fi~~~ 368 (411)
++++.. .|.+++- +.. .+.|..+.+++.+.+...
T Consensus 165 ~~~v~~--VP~~~i~---~~~--~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 165 ALGIQG--VPAVFLN---GEE--FHNGRMDLAELLEKLEET 198 (515)
T ss_pred hcCCcc--cCEEEEC---CcE--EEecCCCHHHHHHHHhhc
Confidence 999986 9999872 222 255666666665555433
No 331
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0045 Score=46.52 Aligned_cols=64 Identities=20% Similarity=0.397 Sum_probs=51.0
Q ss_pred CCeEEEEEeC--------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHhhCcc-ccccEEEEEcC
Q 015217 178 KDLWIVEFFA--------PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-------SLMSKFNV-QGFPTILVFGA 241 (411)
Q Consensus 178 ~~~~lv~f~~--------~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-------~l~~~~~v-~~~P~i~~~~~ 241 (411)
++..+|+|++ +|||.|....|.+.++-+....++.|.+|+..+-+ .+....++ ..+||++=+++
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 4457888885 59999999999999999988889999999876533 34555666 78899988764
No 332
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.94 E-value=0.0028 Score=43.93 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|+++||++|+.....+.+.. +.+..+|.+.+.+ +.+..+...+|++++ +|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 57899999999999998887664 5666778876553 344457788898643 554
No 333
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.92 E-value=0.0025 Score=45.81 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=39.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-h----hHHhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE-K----SLMSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~-~----~l~~~~~v~~~P~i~~ 238 (411)
++.|+++||+.|+.+.+.+.++.. .+.+..++.+.+ . .+.+..|..++|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 578999999999999999988765 355666665544 1 3555668889998754
No 334
>PRK13189 peroxiredoxin; Provisional
Probab=96.91 E-value=0.009 Score=52.03 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217 47 ANG-VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE 97 (411)
Q Consensus 47 ~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~ 97 (411)
+++ .+|+.|++.||+.|....+.+.+.++.++. ++.++.|.++. +..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 455 556688899999999999999999998864 45565555541 2367888
Q ss_pred cCCC-------cccEEEEEeC-CCCCccc----CCCCCcchhHHHHH
Q 015217 98 YGIR-------GFPTIKVFVP-GKPPVDY----QGARDVKPIAEFAL 132 (411)
Q Consensus 98 ~~i~-------~~P~~~~~~~-g~~~~~~----~g~~~~~~l~~~~~ 132 (411)
||+. ..|+.++++. |...... ...++.+++.+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~ 160 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVK 160 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 8875 4688888864 4331121 23344555555554
No 335
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.90 E-value=0.0035 Score=42.02 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=39.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~ 238 (411)
+++|+.++|+.|+.....+.+ ..+.+..+|.+.++. +.+..|...+|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999999998853 237777888777644 333348899999886
No 336
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.86 E-value=0.0048 Score=43.26 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=40.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|+.+||+.|++....|++ ..+.+..+|+++++. +.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 678999999999999988875 236677778876653 555667788999744 454
No 337
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.86 E-value=0.0038 Score=43.44 Aligned_cols=51 Identities=16% Similarity=0.408 Sum_probs=37.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC----ccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF----NVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~----~v~~~P~i~~ 238 (411)
+++|+++||++|..+...+.+. .+.+..++.+.+....+.+ ++..+|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 5789999999999988887762 3566667776555444433 6778999876
No 338
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.84 E-value=0.0068 Score=52.47 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=57.4
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc---------------------------cHhHHHh
Q 015217 47 ANGV-VLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE---------------------------HQSLAQE 97 (411)
Q Consensus 47 ~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~---------------------------~~~~~~~ 97 (411)
++++ +|+.|+++||+.|....+.+.+.+..++. ++.++.+.+|. +.++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 4554 55588999999999999999999999864 46666666652 2356777
Q ss_pred cCCC-------cccEEEEEeC-CCCCcc--c--CCCCCcchhHHHHHH
Q 015217 98 YGIR-------GFPTIKVFVP-GKPPVD--Y--QGARDVKPIAEFALQ 133 (411)
Q Consensus 98 ~~i~-------~~P~~~~~~~-g~~~~~--~--~g~~~~~~l~~~~~~ 133 (411)
||+. ..|+.+++.. |..... | .-.++.+++.+.+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 8863 3688888864 433222 2 123455566655543
No 339
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.82 E-value=0.0035 Score=45.61 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=51.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHhhCcc--ccccEEEEEcCCCCCcccccCCCCH
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE----KSLMSKFNV--QGFPTILVFGADKDSPIPYEGARTA 255 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~----~~l~~~~~v--~~~P~i~~~~~~~~~~~~y~g~~~~ 255 (411)
++.|+.+||++|......+.++...+. .+.+..+|.+.+ .++.+..|- ..+|+|++ +++ +-| ..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi---~g~----~ig--G~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV---DEK----HVG--GC 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE---CCE----Eec--CH
Confidence 678999999999999999998875543 356666666542 346666663 68899865 221 223 35
Q ss_pred HHHHHHHHHHh
Q 015217 256 GAIESFALEQL 266 (411)
Q Consensus 256 ~~i~~fi~~~~ 266 (411)
++|.++..++.
T Consensus 72 ~dl~~~~~~~~ 82 (86)
T TIGR02183 72 TDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHhcc
Confidence 78888877654
No 340
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.81 E-value=0.0073 Score=48.37 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 177 SKDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 177 ~~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
.+++++|.|| +.||+.|....+.+.++..+++. .+.+..|+.+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4678888888 78999999999999999999854 57787777654
No 341
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.79 E-value=0.0058 Score=42.99 Aligned_cols=54 Identities=19% Similarity=0.313 Sum_probs=39.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHH----HhcCCC-cccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLA----QEYGIR-GFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~----~~~~i~-~~P~~~~~~~g~ 113 (411)
++.|+.++|++|.+....|.+. ++.+-.+|++.+++.. +..|.. .+|++++ +|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCE
Confidence 5789999999999999888752 4667777887665433 345766 8998643 554
No 342
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.78 E-value=0.011 Score=50.64 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc----------------------------cHhHHH
Q 015217 47 ANGVVLVEFYA-PWCGHCQALTPIWEKAATVLKG-VATVAALDANE----------------------------HQSLAQ 96 (411)
Q Consensus 47 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~----------------------------~~~~~~ 96 (411)
++++++|.||+ .||+.|....+.+.++.+.+.. ++.++.|+++. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 47788889995 7799999999999999998875 56777666652 235788
Q ss_pred hcCCC------cccEEEEEeCCC
Q 015217 97 EYGIR------GFPTIKVFVPGK 113 (411)
Q Consensus 97 ~~~i~------~~P~~~~~~~g~ 113 (411)
.||+. .+|+.+++++.+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G 137 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKG 137 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCC
Confidence 88885 368888887543
No 343
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.78 E-value=0.009 Score=48.85 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred CCCeEEEEEeCC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 177 SKDLWIVEFFAP-WCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 177 ~~~~~lv~f~~~-~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
..++++|.||+. ||+.|....+.+.++.+.+.+ .+.+..|+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 356788889975 788899999999999988876 47777776554
No 344
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.78 E-value=0.0064 Score=43.56 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=48.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH---HHhcCCCcccEEEEEeCCCCCcccCCCCCcchhH
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL---AQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIA 128 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~---~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~ 128 (411)
++.|+.+||++|.+....|.+ ..+.|-.+|++++++. .+..|...+|++++ ++... +..+++.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~~----~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLSW----SGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEEE----ecCCHHHHH
Confidence 678999999999999888854 3478888899877653 34457789999854 33222 244566666
Q ss_pred HHHHH
Q 015217 129 EFALQ 133 (411)
Q Consensus 129 ~~~~~ 133 (411)
+++..
T Consensus 71 ~~~~~ 75 (81)
T PRK10329 71 RLHPA 75 (81)
T ss_pred HHHHh
Confidence 55543
No 345
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.78 E-value=0.0058 Score=49.61 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=34.5
Q ss_pred CeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 179 DLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 179 ~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
++++|.|| +.||+.|....+.+.++.+.+.. .+.+..|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 66677776 89999999999999999999975 47777777554
No 346
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.75 E-value=0.0077 Score=52.81 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=56.6
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------------------------
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD--------------------------------------- 217 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~--------------------------------------- 217 (411)
+.+..++.|..+.||+|+.+.+.+.++.+ ..+.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 34678999999999999999988776643 112222211
Q ss_pred -C----CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHH
Q 015217 218 -C----DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQ 265 (411)
Q Consensus 218 -~----~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~ 265 (411)
| ..+..+++++||+++|+++ +.+|. ...|..+.+.|.+++.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 1 1134588899999999999 44433 347888899999888653
No 347
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.74 E-value=0.0042 Score=44.30 Aligned_cols=54 Identities=19% Similarity=0.367 Sum_probs=38.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH----HHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL----AQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|+.+||++|.+....|.+. .+.+-.+|++.+++. .+..|...+|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 4679999999999999988753 355666777766543 34457889999744 554
No 348
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.73 E-value=0.013 Score=50.32 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=33.4
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (411)
Q Consensus 50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~ 89 (411)
.+++.|++.||+.|....+.+.++.+.+++ ++.++.|.++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 566789999999999999999999999874 4677777665
No 349
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.64 E-value=0.0047 Score=46.19 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=37.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH---h----HHHhcCCCcccEEEEEeCCCC
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ---S----LAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~---~----~~~~~~i~~~P~~~~~~~g~~ 114 (411)
-++.|..+||++|.+....|.+.. +.+..+|++.++ + +.+..|...+|.++ .+|+.
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~ 71 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKL 71 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEE
Confidence 377899999999999998776542 444456665442 2 33334678999974 35543
No 350
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.62 E-value=0.0067 Score=43.27 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=40.1
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---hhHHhhCccccccEEEE
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE---KSLMSKFNVQGFPTILV 238 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~---~~l~~~~~v~~~P~i~~ 238 (411)
...+++|+.+||++|+.....+.+. .+.+-.++++.+ ..+.+..|...+|.+++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 4457889999999999999999742 355666776654 34555668889998865
No 351
>PRK15000 peroxidase; Provisional
Probab=96.60 E-value=0.016 Score=49.57 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=35.4
Q ss_pred CCCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 177 SKDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 177 ~~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
..+.++++||. .||+.|....+.|.+.+.+|.. .+.+..|+++.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 35688999998 5999999999999999999975 36666666553
No 352
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.59 E-value=0.017 Score=43.88 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=60.0
Q ss_pred ceEeCChhHHHHhcCCc-c-EEE---------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEee
Q 015217 275 VTELTSQDVMEEKCGSA-A-ICF---------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALN 343 (411)
Q Consensus 275 v~~l~~~~~~~~~~~~~-~-~~~---------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~ 343 (411)
+.++++.+.++.+.... . .++ ..+.|..+|..+|+. +.|+.... ..+...+++. .|.+++++
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd-~~F~~t~~---~~~~~~~~~~---~~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLRED-YKFHHTFD---SEIFKSLKVS---PGQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccC-CEEEEECh---HHHHHhcCCC---CCceEEEC
Confidence 35566666666654333 2 222 347899999999998 99988776 6788888875 67888886
Q ss_pred cCC------CccccCCCC-CChhH-HHHHHHH
Q 015217 344 VKK------GVYTPLKSA-FELEH-IVEFVKE 367 (411)
Q Consensus 344 ~~~------~~~~~~~~~-~~~~~-i~~fi~~ 367 (411)
|.. .+...|.+. .+.++ |.+||..
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 543 333567766 67766 9999975
No 353
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.58 E-value=0.015 Score=49.88 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=56.2
Q ss_pred CCeE-EEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHhhC
Q 015217 178 KDLW-IVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS---------------------------EKSLMSKF 228 (411)
Q Consensus 178 ~~~~-lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~---------------------------~~~l~~~~ 228 (411)
.+.+ ++.|+++||+.|..-.+.+.++..+|.. .+.+..|+++. +..+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 3434 4467899999999999999998888865 35555555442 33466667
Q ss_pred ccc------cccEEEEEcCCCCCcccc----cCCCCHHHHHHHHHH
Q 015217 229 NVQ------GFPTILVFGADKDSPIPY----EGARTAGAIESFALE 264 (411)
Q Consensus 229 ~v~------~~P~i~~~~~~~~~~~~y----~g~~~~~~i~~fi~~ 264 (411)
|+. .+|+.+++..++...... .+..+.+++.+.+..
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 763 368888886655322111 234577777766644
No 354
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.58 E-value=0.0079 Score=44.44 Aligned_cols=59 Identities=31% Similarity=0.438 Sum_probs=44.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc--c------------------------------cHhHHHhcC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN--E------------------------------HQSLAQEYG 99 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~--~------------------------------~~~~~~~~~ 99 (411)
++.|+.+.|++|..+.+.+.++.....+++.+...... . +...+.++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999998666666655544331 1 124567789
Q ss_pred CCcccEEEEEe
Q 015217 100 IRGFPTIKVFV 110 (411)
Q Consensus 100 i~~~P~~~~~~ 110 (411)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999987743
No 355
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.55 E-value=0.0092 Score=48.06 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=37.1
Q ss_pred CCCeEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc
Q 015217 177 SKDLWIVEFFAPW-CGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221 (411)
Q Consensus 177 ~~~~~lv~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~ 221 (411)
..+++++.||+.| |++|+...+.+.++.+.+. .+.+..|+.+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~ 69 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLP 69 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCH
Confidence 3568999999988 6999999999999999986 588888887653
No 356
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.54 E-value=0.024 Score=47.86 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=56.4
Q ss_pred CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC-------------------------CchhHHhhCcc
Q 015217 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD-------------------------SEKSLMSKFNV 230 (411)
Q Consensus 178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~-------------------------~~~~l~~~~~v 230 (411)
.+.++++|| +.||+.|....+.|.+...+|.. .+.+.-|+.+ .+..+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 457888888 99999999999999999999864 3545544433 24457777887
Q ss_pred c----cc--cEEEEEcCCCCCccccc----CCCCHHHHHHHH
Q 015217 231 Q----GF--PTILVFGADKDSPIPYE----GARTAGAIESFA 262 (411)
Q Consensus 231 ~----~~--P~i~~~~~~~~~~~~y~----g~~~~~~i~~fi 262 (411)
. +. |+.+++..++.....+. ...+.+++.+.+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 2 44 88888865553222221 124666766665
No 357
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=96.53 E-value=0.022 Score=41.86 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=42.6
Q ss_pred ccEEEEecCCCchh-hHHHhCCCCCCCCeEEEee-cCCCccccCCCCCChhHHHHHHHHHc
Q 015217 311 HYSFVWAAAGKQPD-LENRVGVGGYGYPALVALN-VKKGVYTPLKSAFELEHIVEFVKEAG 369 (411)
Q Consensus 311 ~~~f~~i~~~~~~~-~~~~f~~~~~~~P~l~v~~-~~~~~~~~~~~~~~~~~i~~fi~~~~ 369 (411)
++.|+....++..+ +....++.. .-|.+++++ |++++|+.-..++|.+.+.+|+++++
T Consensus 56 p~~f~~a~ede~tdsLRDf~nL~d-~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 56 PLLFFVAGEDDMTDSLRDYTNLPE-AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ceeeeeeccchHHHHHHHhcCCCc-cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhh
Confidence 56666665555544 555667764 789999998 45566655557799999999999986
No 358
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.52 E-value=0.0073 Score=41.76 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=37.7
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSL----MSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l----~~~~~v~~~P~i~~ 238 (411)
++.|+++||++|+.....+.+.. +.+..+|...+... .+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57899999999999999988764 56667777665543 33456677897754
No 359
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.51 E-value=0.0083 Score=41.90 Aligned_cols=66 Identities=9% Similarity=0.199 Sum_probs=45.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhC---ccccccEEEEEcCCCCCcccccCCCCHHHHH
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKF---NVQGFPTILVFGADKDSPIPYEGARTAGAIE 259 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~---~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~ 259 (411)
.+|..++|+.|+.....+.+ ..+.|..+|.+.++.....+ |...+|.+++ . +. ..-|.++.+.|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~-~-g~----~~~~G~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA-D-GD----LSWSGFRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE-C-CC----cEEeccCHHHHH
Confidence 57888999999999998875 24677778887776555544 7778998766 2 21 133456666654
Q ss_pred H
Q 015217 260 S 260 (411)
Q Consensus 260 ~ 260 (411)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 360
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.50 E-value=0.0097 Score=41.54 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=38.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh---HHHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS---LAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~---~~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|+.+||+.|.+....|.+. ++.+..+|++.+.. +.+..|...+|.+++ +|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~ 59 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCE
Confidence 6889999999999998888742 35666677765542 333458889999743 554
No 361
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0084 Score=42.82 Aligned_cols=51 Identities=16% Similarity=0.401 Sum_probs=37.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-----hHHHhc-CCCcccEEEE
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-----SLAQEY-GIRGFPTIKV 108 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-----~~~~~~-~i~~~P~~~~ 108 (411)
++.|..++|++|.+....|. +..+.+..++.+.+. +..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 67899999999999988887 234566666665443 344454 7899999765
No 362
>PHA03050 glutaredoxin; Provisional
Probab=96.40 E-value=0.0065 Score=46.20 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=39.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc---c----HhHHHhcCCCcccEEEEEeCCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE---H----QSLAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~---~----~~~~~~~~i~~~P~~~~~~~g~~ 114 (411)
++.|..+|||+|++....|.+.....+ .+..+|+++ . ..+.+.-|.+.+|++++ +|+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~ 79 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTS 79 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEE
Confidence 788999999999999988877653221 344455553 2 24555568889999754 5543
No 363
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.34 E-value=0.042 Score=39.32 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=52.2
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH---hhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM---SKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~---~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (411)
.+.+|..+||++|......+.+ ..+.|-.+|.+.+++.. +..|...+|.+++ ++. .-+.++.+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i---~~~----~~~Gf~~~~ 68 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA---GDL----SWSGFRPDM 68 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE---CCE----EEecCCHHH
Confidence 3678999999999999988864 24778888888766533 3346678998865 221 123578888
Q ss_pred HHHHHHHHh
Q 015217 258 IESFALEQL 266 (411)
Q Consensus 258 i~~fi~~~~ 266 (411)
|.+.+..+.
T Consensus 69 l~~~~~~~~ 77 (81)
T PRK10329 69 INRLHPAPH 77 (81)
T ss_pred HHHHHHhhh
Confidence 888877654
No 364
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.31 E-value=0.013 Score=50.17 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=50.9
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------------------------
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD--------------------------------------- 217 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~--------------------------------------- 217 (411)
+.+..++.|+.+.|++|+.+.+.+.+ ..+.+.+..+.
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 35688999999999999999987765 12222222211
Q ss_pred ------CCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHH
Q 015217 218 ------CDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESF 261 (411)
Q Consensus 218 ------~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~f 261 (411)
.+.+..+++++|+.++|+++ +.++. ...|..+.+.|.++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~ 196 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEAL 196 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhh
Confidence 11233588889999999997 55433 25677777777665
No 365
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.27 E-value=0.025 Score=50.31 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe----------------CC----------------------
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD----------------CD---------------------- 219 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~----------------~~---------------------- 219 (411)
.+..++.|..+.|++|+++++.+..+.+. +++.+..+- |.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 45778899999999999998887665443 222222221 00
Q ss_pred ------------CchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217 220 ------------SEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 220 ------------~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
.+..+.+++|++++|++++-..++ ......|....++|.+.+
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l 248 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIM 248 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence 012367789999999999875433 244567887888877664
No 366
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.23 E-value=0.019 Score=42.90 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=53.1
Q ss_pred ccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch----hHHhhCcccc-ccEEEEEc
Q 015217 167 SSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK----SLMSKFNVQG-FPTILVFG 240 (411)
Q Consensus 167 ~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~----~l~~~~~v~~-~P~i~~~~ 240 (411)
.+++.+++..+ +++++++=.++.|+-+......|++......+.+.++.++.-+.+ .++++|||.. -|.+++++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~ 86 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK 86 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE
Confidence 45566655443 567777778899999999999999999988877999999876654 5788999984 59999999
Q ss_pred CCC
Q 015217 241 ADK 243 (411)
Q Consensus 241 ~~~ 243 (411)
+|.
T Consensus 87 ~g~ 89 (105)
T PF11009_consen 87 NGK 89 (105)
T ss_dssp TTE
T ss_pred CCE
Confidence 876
No 367
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.20 E-value=0.013 Score=43.84 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=35.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh-------HHhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS-------LMSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-------l~~~~~v~~~P~i~~ 238 (411)
++.|..+|||+|+.....+.+.. +.|..+|.+.++. +.+..|...+|.|++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 77899999999999999887642 4444555554432 333346778998854
No 368
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.19 E-value=0.032 Score=47.91 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=33.3
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
.+++.|+++||+.|....+.+.+++..|.. .+.+..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 456678899999999999999999999975 36777676554
No 369
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.19 E-value=0.012 Score=41.82 Aligned_cols=51 Identities=16% Similarity=0.414 Sum_probs=37.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhh----CccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSK----FNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~----~~v~~~P~i~~ 238 (411)
++.|+.++|++|......+.+. .+.+..+|.+.++...++ .|...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3578899999999999999853 355666666666544443 46678998865
No 370
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.19 E-value=0.02 Score=40.21 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=37.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHh----hCccc-cccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMS----KFNVQ-GFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~----~~~v~-~~P~i~~ 238 (411)
+++|..++|++|......+.+. .+.|..++.+.++...+ ..|.. .+|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5789999999999999988762 36666777776554433 35665 7898765
No 371
>PHA03050 glutaredoxin; Provisional
Probab=96.14 E-value=0.015 Score=44.24 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=39.8
Q ss_pred HhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---c----hhHHhhCccccccEEEE
Q 015217 174 VLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS---E----KSLMSKFNVQGFPTILV 238 (411)
Q Consensus 174 ~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~---~----~~l~~~~~v~~~P~i~~ 238 (411)
+.++++ ++.|..+|||+|+.....+.+...... .|..+|.+. . ..+.+.-|...+|+|++
T Consensus 9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 344443 778999999999999999887643221 344444443 2 23555567788999866
No 372
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.03 E-value=0.08 Score=40.92 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=56.3
Q ss_pred hHHHH-hcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE-EEEE
Q 015217 170 FDELV-LKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT-ILVF 239 (411)
Q Consensus 170 ~~~~~-~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~-i~~~ 239 (411)
..+.+ .+.++.+++-|..+|.+.|-++-+.+.++|...++-..++.||.++-++..+.|.+.. |. +++|
T Consensus 11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~d-P~tvmFF 81 (133)
T PF02966_consen 11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYD-PCTVMFF 81 (133)
T ss_dssp HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-S-SEEEEEE
T ss_pred HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCC-CeEEEEE
Confidence 33443 3457799999999999999999999999999999989999999999999999999995 65 5555
No 373
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.00 E-value=0.031 Score=39.05 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=38.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~ 238 (411)
+++|+.++|+.|+.....+.+ ..+.+..+|...++. +.+..+-..+|.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 678999999999999998886 236677777776554 445556677898865
No 374
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.95 E-value=0.063 Score=47.71 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=54.7
Q ss_pred CCeEEEEEe-CCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHhh
Q 015217 178 KDLWIVEFF-APWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS----------------------------EKSLMSK 227 (411)
Q Consensus 178 ~~~~lv~f~-~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~----------------------------~~~l~~~ 227 (411)
.+.++++|| +.||+.|....+.|.+...+|.. .+.+..|+++. +..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 445666666 89999999999999999999865 25555555443 2346677
Q ss_pred Cccc-----cccEEEEEcCCCCCcccc----cCCCCHHHHHHHH
Q 015217 228 FNVQ-----GFPTILVFGADKDSPIPY----EGARTAGAIESFA 262 (411)
Q Consensus 228 ~~v~-----~~P~i~~~~~~~~~~~~y----~g~~~~~~i~~fi 262 (411)
||+. ..|+.+++..++.....+ ....+.+++.+.+
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l 221 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLF 221 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 7764 368888886555322222 1124556665554
No 375
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.88 E-value=0.032 Score=38.88 Aligned_cols=67 Identities=15% Similarity=0.333 Sum_probs=44.1
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK---SLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (411)
.+++|..++|+.|......+.+. .+.+..++.+.+. .+.+..|...+|.+++ +++ +-| ..++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi---~g~----~ig--g~~~ 66 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI---DGE----LIG--GSDD 66 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE---CCE----EEe--CHHH
Confidence 36789999999999999888752 3556666665543 2334457888998854 221 223 2567
Q ss_pred HHHHH
Q 015217 258 IESFA 262 (411)
Q Consensus 258 i~~fi 262 (411)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 76664
No 376
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.035 Score=39.60 Aligned_cols=51 Identities=18% Similarity=0.428 Sum_probs=35.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----hHHhhC-ccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-----SLMSKF-NVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~l~~~~-~v~~~P~i~~ 238 (411)
++.|..++||+|+.....+.+ ..+.|..++.+... +..++. |...+|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 677899999999999988883 23555555544333 334444 7889998887
No 377
>PRK10638 glutaredoxin 3; Provisional
Probab=95.59 E-value=0.044 Score=39.43 Aligned_cols=54 Identities=9% Similarity=0.246 Sum_probs=39.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH----hHHHhcCCCcccEEEEEeCCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ----SLAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~P~~~~~~~g~ 113 (411)
++.|..+||++|++....+.+. .+.+..+|++.++ .+.+..|...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 6788999999999999888753 3556667776554 3445567888998744 554
No 378
>PRK13189 peroxiredoxin; Provisional
Probab=95.58 E-value=0.084 Score=45.99 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=31.8
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
.++++|+++||+.|....+.|.+++.+|.. .+.+..|+++.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 455577799999999999999999999975 36666665553
No 379
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.52 E-value=0.09 Score=45.52 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=32.8
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
.+++.|.++||+.|..-.+.|.++..+|.. .+.+.-++++.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 456788899999999999999999999965 36666666554
No 380
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.51 E-value=0.052 Score=39.92 Aligned_cols=59 Identities=34% Similarity=0.546 Sum_probs=44.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC--C------------------------------chhHHhhCc
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD--S------------------------------EKSLMSKFN 229 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~--~------------------------------~~~l~~~~~ 229 (411)
+..|++..|+.|..+.+.+.++.....+++.+...... . +.....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999998777776666654332 1 123566789
Q ss_pred cccccEEEEEc
Q 015217 230 VQGFPTILVFG 240 (411)
Q Consensus 230 v~~~P~i~~~~ 240 (411)
+.++|++++..
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999843
No 381
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.39 E-value=0.043 Score=46.07 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=35.7
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD 219 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~ 219 (411)
..++++|.|+++||+.|.+ .+.+.++.++|++ .+.+..+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3579999999999999975 8899999999986 4888888774
No 382
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.38 E-value=0.29 Score=41.07 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=65.9
Q ss_pred CCcEEeCc-cchHHHHhcCCC--eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEE
Q 015217 160 NESIELNS-SNFDELVLKSKD--LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTI 236 (411)
Q Consensus 160 ~~v~~l~~-~~~~~~~~~~~~--~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i 236 (411)
..|.++++ ++|.+.+....+ ..+|..|.+.-+.|..+...+.-+|..|. .++|..+-. ++.....+|....+|++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckiks-s~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKS-SNTGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeee-ccccchhhhcccCCceE
Confidence 35777755 778877655533 67889999999999999999999999987 588988873 34556788999999999
Q ss_pred EEEcCCC
Q 015217 237 LVFGADK 243 (411)
Q Consensus 237 ~~~~~~~ 243 (411)
.+|++|.
T Consensus 216 liYkgGe 222 (273)
T KOG3171|consen 216 LIYKGGE 222 (273)
T ss_pred EEeeCCc
Confidence 9998765
No 383
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.37 E-value=0.083 Score=39.29 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=33.9
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217 58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~ 113 (411)
+||++|.+....|.+.. +.+..+|.+++++ +.+..|-..+|++++ +|+
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGE 76 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 89999999998887642 4566778766554 334457779999754 554
No 384
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.31 E-value=0.076 Score=44.42 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=24.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhCCCeEE
Q 015217 54 EFYAPWCGHCQALTPIWEKAATVLKGVATV 83 (411)
Q Consensus 54 ~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~ 83 (411)
+|+-|.|+.|-...|.|.++...+++++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence 699999999999999999999999986544
No 385
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.19 E-value=0.14 Score=44.27 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=32.3
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 180 LWIVEFFAPWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 180 ~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
.+++.|.++||+.|....+.|.+++.+|.. .+.+..++++.
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 444577899999999999999999999965 36666666554
No 386
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.14 E-value=0.068 Score=39.13 Aligned_cols=48 Identities=23% Similarity=0.451 Sum_probs=33.9
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCCCcccEEEEEeCCC
Q 015217 58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~ 113 (411)
+||++|.+....|.+.. +.+..+|++.+++ +.+..|-..+|++++ +|+
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 79999999988887653 5666677765553 444457889999743 554
No 387
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.94 E-value=0.14 Score=38.02 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=32.5
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217 188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (411)
Q Consensus 188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~ 238 (411)
+|||+|......+.+.. +.|..+|...++. +.+..|...+|.+++
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 89999999999987743 5566677765554 334456678898875
No 388
>PRK10638 glutaredoxin 3; Provisional
Probab=94.90 E-value=0.083 Score=37.98 Aligned_cols=51 Identities=12% Similarity=0.335 Sum_probs=37.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~ 238 (411)
+++|..++|++|+.....+.+. .+.+..+|++.+.. +.+..|...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6688899999999999988863 35566677765553 344456778998855
No 389
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.90 E-value=0.27 Score=42.54 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=49.2
Q ss_pred cccCCCCCcEEeCccchhH--HHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEE
Q 015217 24 ALYGSSSPVVQLTPNNFKS--KVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAAL 86 (411)
Q Consensus 24 ~~~~~~~~~~~l~~~~f~~--~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~v 86 (411)
+...++..+..++++.... .....++|.++.|.+-.||+-..-...++++++.+.+...|..|
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 3456778899999877221 22467899999999999999999999999999999875445433
No 390
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.81 E-value=0.013 Score=51.98 Aligned_cols=128 Identities=22% Similarity=0.351 Sum_probs=88.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEe-ccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALD-ANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd-~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~ 125 (411)
+..++-+.||++||+..+...|.+.-....+.. +....++ ....+++..+||+.+.|++.+..... ..+|.|.++..
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~-~~~~~~~r~l~ 152 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC-PASYRGERDLA 152 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecccc-chhhcccccHH
Confidence 356899999999999999999998887777762 3333332 23557889999999999988877654 68999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHH
Q 015217 126 PIAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAAN 205 (411)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~ 205 (411)
.|++|..+.+. ....++. .+...-....+|.+||++.....|...-+..
T Consensus 153 sLv~fy~~i~~------------------------~~v~ie~-------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~ 201 (319)
T KOG2640|consen 153 SLVNFYTEITP------------------------MSVLIEI-------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTW 201 (319)
T ss_pred HHHHHHHhhcc------------------------chhcccc-------cCcccceeeeEeccccCcccccCcCCCcchh
Confidence 99999876541 1111111 1111245677888888776666665544444
Q ss_pred Hh
Q 015217 206 NL 207 (411)
Q Consensus 206 ~~ 207 (411)
..
T Consensus 202 ~r 203 (319)
T KOG2640|consen 202 AR 203 (319)
T ss_pred cc
Confidence 43
No 391
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.78 E-value=0.24 Score=42.38 Aligned_cols=42 Identities=7% Similarity=0.181 Sum_probs=32.8
Q ss_pred CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 015217 178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCD 219 (411)
Q Consensus 178 ~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~ 219 (411)
.+.++|+||. .||+.|......+.+++++|.. .+.+..|+++
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d 79 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD 79 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4577788885 7899998888899999999876 4666666655
No 392
>PRK10824 glutaredoxin-4; Provisional
Probab=94.77 E-value=0.11 Score=39.89 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=36.6
Q ss_pred HhcCCCeEEEEEeC-----CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH----hhCccccccEEEE
Q 015217 174 VLKSKDLWIVEFFA-----PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLM----SKFNVQGFPTILV 238 (411)
Q Consensus 174 ~~~~~~~~lv~f~~-----~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~----~~~~v~~~P~i~~ 238 (411)
++++++ +|.|.. ++||+|+.....+.... +.+..+|.+.+..+. +.-|...+|.|++
T Consensus 11 ~I~~~~--Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 11 QIAENP--ILLYMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHhcCC--EEEEECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 344444 444565 59999999999988763 334445555554433 3346678998887
No 393
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.69 E-value=0.52 Score=39.20 Aligned_cols=104 Identities=15% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCCCcEEeCccchHHHHhcCC-C-eEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccE
Q 015217 158 DSNESIELNSSNFDELVLKSK-D-LWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPT 235 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~-~-~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~ 235 (411)
.-..|..++..++.+.+.... . -++|..|...-+.|.-+...+..+|..|.. ++|+.+-.+.. ...|.-...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCe
Confidence 456799999999988875543 3 567788999999999999999999999985 78877643322 33466677899
Q ss_pred EEEEcCCCCC-----cccccC-CCCHHHHHHHHHHH
Q 015217 236 ILVFGADKDS-----PIPYEG-ARTAGAIESFALEQ 265 (411)
Q Consensus 236 i~~~~~~~~~-----~~~y~g-~~~~~~i~~fi~~~ 265 (411)
|++|..|.-. +..+-| ..+.+++..++.+.
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999765421 222333 24677777777665
No 394
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.00 E-value=0.22 Score=41.33 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCcEEeCccchhHHHhc--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 30 SPVVQLTPNNFKSKVLN--ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
..|..+++.+|-+.+.. ++-.|+|..|..+-+-|.-+...++.++..++. +.|+++=.+..- .-|-=...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI---pNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI---PNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc---CCCcccCCCeEE
Confidence 45778998888877743 445789999999999999999999999999986 566666433211 112234679999
Q ss_pred EEeCCCCCcccCC
Q 015217 108 VFVPGKPPVDYQG 120 (411)
Q Consensus 108 ~~~~g~~~~~~~g 120 (411)
+|..|.....+-|
T Consensus 167 VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 167 VYHHGALKKQMIG 179 (240)
T ss_pred EeecchHHhheeh
Confidence 9988865444433
No 395
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.90 E-value=0.18 Score=36.90 Aligned_cols=45 Identities=27% Similarity=0.480 Sum_probs=32.0
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCccccccEEEE
Q 015217 188 PWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNVQGFPTILV 238 (411)
Q Consensus 188 ~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v~~~P~i~~ 238 (411)
+||++|+.....+.+.. +.|..+|...+.. +.+..|-..+|.|++
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 69999999998887643 5566667665554 344456778998855
No 396
>PRK10824 glutaredoxin-4; Provisional
Probab=93.81 E-value=0.21 Score=38.30 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhH----HHhcCCCcccEEEEEeCCC
Q 015217 58 PWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSL----AQEYGIRGFPTIKVFVPGK 113 (411)
Q Consensus 58 ~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~ 113 (411)
|||++|++....|.... +.+..+|.+.++++ -+.-|-..+|.+++ +|+
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~ 79 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGE 79 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 69999999998887753 33444566655443 33347789999655 554
No 397
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.79 E-value=0.14 Score=49.15 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=38.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh---HHHh---------cCCCcccEEEE
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQS---LAQE---------YGIRGFPTIKV 108 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~---~~~~---------~~i~~~P~~~~ 108 (411)
++.|+.+||++|.+....|.+. +|.+..+|+++++. +.++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 7899999999999998887763 36777788886653 2222 36788999755
No 398
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.43 Score=35.82 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=37.0
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-h----HHhhCccccccEEEE
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK-S----LMSKFNVQGFPTILV 238 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-~----l~~~~~v~~~P~i~~ 238 (411)
.+|.|..+||++|..+...|.. +.....+..+|-..+. + +.+--|-+.+|.+++
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3677999999999998888887 4445666666654332 2 333334557898887
No 399
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=92.84 E-value=0.23 Score=41.54 Aligned_cols=36 Identities=22% Similarity=0.517 Sum_probs=27.8
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 015217 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219 (411)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~ 219 (411)
+|..|.|+.|-...+.+.++...+..++.+-.+-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEcc
Confidence 689999999999999999999999998777666443
No 400
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.49 Score=35.48 Aligned_cols=57 Identities=25% Similarity=0.403 Sum_probs=37.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH-hHHHh----cCCCcccEEEEEeCCC
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ-SLAQE----YGIRGFPTIKVFVPGK 113 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~-~~~~~----~~i~~~P~~~~~~~g~ 113 (411)
-+|.|..+||+.|.++...|.+ +.-...++.+|-+.+. ++.+. -|-+.+|.+++ +|+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 4567899999999997777766 4444566666666443 33333 34668999655 554
No 401
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.48 E-value=0.43 Score=39.02 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=36.8
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNL--KGKVKLGHVDCDS 220 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~--~~~~~f~~v~~~~ 220 (411)
+.++.++.|++..|++|..+.+.+.++.+.+ .+++.|...+...
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 3468899999999999999999999999999 7788888877643
No 402
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.48 E-value=2.3 Score=36.87 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=47.4
Q ss_pred CCCCCcEEeCccc---hHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217 157 SDSNESIELNSSN---FDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216 (411)
Q Consensus 157 ~~~~~v~~l~~~~---~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v 216 (411)
..+++++.++... +.++ .+.+.|.++.|.+-.||+-..-...|++++++|.+.+.|..|
T Consensus 79 APns~vv~l~g~~~~~ildf-~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDF-AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCCCceEeeCCCcceeHHHh-ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 3568889998877 4443 456789999999999999999999999999999986555544
No 403
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=92.46 E-value=0.5 Score=39.68 Aligned_cols=86 Identities=14% Similarity=0.260 Sum_probs=65.4
Q ss_pred CcEEeC-ccchhHHHhcC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 31 PVVQLT-PNNFKSKVLNA--NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 31 ~~~~l~-~~~f~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
.|.+++ .++|...+.+. ....+|+.|-++-+.|..+...+.-+|..++- +.|.++-.+ +-....+|...++|++.
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss-~~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSS-NTGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeec-cccchhhhcccCCceEE
Confidence 456665 46787555333 34789999999999999999999999998864 677777655 23346788899999999
Q ss_pred EEeCCCCCccc
Q 015217 108 VFVPGKPPVDY 118 (411)
Q Consensus 108 ~~~~g~~~~~~ 118 (411)
+|.+|..+-+|
T Consensus 217 iYkgGeLIgNF 227 (273)
T KOG3171|consen 217 IYKGGELIGNF 227 (273)
T ss_pred EeeCCchhHHH
Confidence 99998765444
No 404
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.38 E-value=0.36 Score=38.98 Aligned_cols=38 Identities=45% Similarity=0.641 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHV 216 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v 216 (411)
.++.++.|+..+|++|+.+.+.+.++...+. ++.+...
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFK 42 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEE
Confidence 4678999999999999999999999887764 4544443
No 405
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.51 E-value=2.8 Score=30.86 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHH
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGA 257 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~ 257 (411)
+.+.++.|..+. ..|..+...++++|..- +++.+-..+... ..|++.+..++....++|.|-..-.+
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhE 85 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHE 85 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchh
Confidence 445566676655 88999999998888764 466664432111 46999998776444699999877788
Q ss_pred HHHHHHH
Q 015217 258 IESFALE 264 (411)
Q Consensus 258 i~~fi~~ 264 (411)
+..|+..
T Consensus 86 f~Slila 92 (94)
T cd02974 86 FTSLVLA 92 (94)
T ss_pred HHHHHHH
Confidence 8888754
No 406
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=1.2 Score=44.64 Aligned_cols=86 Identities=19% Similarity=0.302 Sum_probs=66.2
Q ss_pred CCCCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccHhHHHhc------
Q 015217 28 SSSPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQSLAQEY------ 98 (411)
Q Consensus 28 ~~~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~~~~~~~------ 98 (411)
.+.....++++.|. .....++|+++-...+||.-|.-+..+= .++++.++..+.-++||-++-|.+-+.|
T Consensus 24 nPV~W~pW~~eAf~-~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 24 NPVDWYPWGEEAFA-KAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CCccccccCHHHHH-HHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence 34556678889999 7888999999999999999998877732 6788888888888899988777554444
Q ss_pred --CCCcccEEEEE-eCCCC
Q 015217 99 --GIRGFPTIKVF-VPGKP 114 (411)
Q Consensus 99 --~i~~~P~~~~~-~~g~~ 114 (411)
|--|+|.-+|+ ++|++
T Consensus 103 ~tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred hccCCCCceeEEECCCCce
Confidence 34589976666 45554
No 407
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=91.19 E-value=4.6 Score=35.30 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCCC------eEEEEEecccc--------------------------Hh
Q 015217 47 ANGVVLVEFYAPWCGH-CQALTPIWEKAATVLKGV------ATVAALDANEH--------------------------QS 93 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~------i~~~~vd~~~~--------------------------~~ 93 (411)
.++.++++|.=+.||. |=.....+.++...++.+ =.|..+|-.++ ++
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 5889999999999986 766666666666666531 15667776433 26
Q ss_pred HHHhcCCCccc-------------EEEEE--e-CCCCCcccCCCCCcchhHHHHHHHHH
Q 015217 94 LAQEYGIRGFP-------------TIKVF--V-PGKPPVDYQGARDVKPIAEFALQQIK 136 (411)
Q Consensus 94 ~~~~~~i~~~P-------------~~~~~--~-~g~~~~~~~g~~~~~~l~~~~~~~~~ 136 (411)
+|++|.|..-+ ++++| . +|+-+.-|.-..+.+++.+-+.+++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 78888776444 34444 3 34433444447788888888877764
No 408
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=90.89 E-value=0.11 Score=46.18 Aligned_cols=86 Identities=21% Similarity=0.442 Sum_probs=68.1
Q ss_pred CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC-CCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHH
Q 015217 178 KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDC-DSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAG 256 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~-~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~ 256 (411)
...+-+.||+.||+..+...+.|.-....|.. +....++- ...+++..+||+.+.|++.+....- +..|.|..+..
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~--~~~~~~~r~l~ 152 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC--PASYRGERDLA 152 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeecccc--chhhcccccHH
Confidence 44778899999999999999999888877763 33333331 2345688899999999999987655 88999999999
Q ss_pred HHHHHHHHHh
Q 015217 257 AIESFALEQL 266 (411)
Q Consensus 257 ~i~~fi~~~~ 266 (411)
+|++|..+.+
T Consensus 153 sLv~fy~~i~ 162 (319)
T KOG2640|consen 153 SLVNFYTEIT 162 (319)
T ss_pred HHHHHHHhhc
Confidence 9999988776
No 409
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=90.56 E-value=3 Score=30.69 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=53.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVK 125 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~ 125 (411)
++.+.++.|.... ..|......++.++..- ++|.+...+... ..|++.+..+|+. -++|.|-....
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 4556677777766 99999988888888764 566664433221 4699999877633 58999998888
Q ss_pred hhHHHHHH
Q 015217 126 PIAEFALQ 133 (411)
Q Consensus 126 ~l~~~~~~ 133 (411)
++..++..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88888754
No 410
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=90.56 E-value=2 Score=36.17 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCC
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKG 79 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 79 (411)
.+.+|+...|+.|....+.+.++.+.+.+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999998844
No 411
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.52 E-value=0.51 Score=39.32 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=35.2
Q ss_pred CCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEe
Q 015217 177 SKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVD 217 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~ 217 (411)
..++.++.|+...||+|+.+.+.+..+.+++.+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 45788999999999999999999999999987777776544
No 412
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=90.46 E-value=0.63 Score=44.67 Aligned_cols=51 Identities=12% Similarity=0.321 Sum_probs=38.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh---HHhh---------CccccccEEEE
Q 015217 182 IVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS---LMSK---------FNVQGFPTILV 238 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~---l~~~---------~~v~~~P~i~~ 238 (411)
++.|..+|||+|+.....+.+. .+.|..+|.+.++. +.++ .|...+|+|++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999999888863 36777788776553 2222 36678899876
No 413
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=89.68 E-value=3.4 Score=35.51 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=46.6
Q ss_pred ccchhHHHhcCCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC-C---C--eEEEEEecc-ccHhHHHhcCC-CcccEEE
Q 015217 37 PNNFKSKVLNANGVVLVEFYAPWCGH-CQALTPIWEKAATVLK-G---V--ATVAALDAN-EHQSLAQEYGI-RGFPTIK 107 (411)
Q Consensus 37 ~~~f~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-~---~--i~~~~vd~~-~~~~~~~~~~i-~~~P~~~ 107 (411)
++.|. ...-++++++|.|.=+.|+. |-.....+.++.+.+. + + +.++.+|-+ +.++..++|.. ...|.+.
T Consensus 57 G~~~~-~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 57 GKPFT-LKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCEee-ccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence 34455 33337999999999888875 7777777777777776 2 3 455555555 34678888887 5555444
Q ss_pred E
Q 015217 108 V 108 (411)
Q Consensus 108 ~ 108 (411)
.
T Consensus 136 ~ 136 (207)
T COG1999 136 G 136 (207)
T ss_pred e
Confidence 3
No 414
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=89.13 E-value=1 Score=36.70 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=41.5
Q ss_pred CCCeEEEEEECCCChhhhhh-hHHHHHHHHHhCC-Ce-EEEEEeccc---cHhHHHhcCC-Cccc
Q 015217 47 ANGVVLVEFYAPWCGHCQAL-TPIWEKAATVLKG-VA-TVAALDANE---HQSLAQEYGI-RGFP 104 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~-~i-~~~~vd~~~---~~~~~~~~~i-~~~P 104 (411)
.+..+++.|.+.||+.|-.. .+.+.+...++.. .+ .++.|.++. ..++++++++ ..+|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 34566666667799999998 9999998888864 34 477777663 4457778877 2444
No 415
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=88.70 E-value=2.2 Score=29.51 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=47.0
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHh-CCCeEEEEEeccccHhHHHhcCCCcccEEEE
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVL-KGVATVAALDANEHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~ 108 (411)
.+..|-+..-+..++....+.++-+.+ .+.+.+-.||..+++++++.++|-..|+++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 455566666688888888888877665 4578999999999999999999999999753
No 416
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=88.10 E-value=1.9 Score=35.87 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=36.1
Q ss_pred cEEeCccchhHHHhcCCCeEEEEEECCCC-hhhhhhhHHHHHHHHHhCC---CeEEEEEecc
Q 015217 32 VVQLTPNNFKSKVLNANGVVLVEFYAPWC-GHCQALTPIWEKAATVLKG---VATVAALDAN 89 (411)
Q Consensus 32 ~~~l~~~~f~~~~~~~~~~~~v~f~~~~C-~~C~~~~~~~~~~~~~~~~---~i~~~~vd~~ 89 (411)
..+-+++.+. ...-++++++|.|.-..| ..|-.....+.++.+.+.. ++.++.|.+|
T Consensus 37 L~d~~G~~~~-~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 37 LTDQDGKTVT-LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp EEETTSSEEE-GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred EEcCCCCEec-HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 3344445555 333468999999999999 5688777778777776652 4555444444
No 417
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=3.6 Score=36.29 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=22.8
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 015217 49 GVVLVEFYAPWCGHCQALTPIWEKAATVL 77 (411)
Q Consensus 49 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 77 (411)
++.++.|....|++|++..+.+.+.....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 67889999999999988888777744443
No 418
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.76 E-value=2 Score=34.63 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=37.1
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHh----HHHhcCC----CcccEEEEEeCCC
Q 015217 52 LVEFYAP------WCGHCQALTPIWEKAATVLKGVATVAALDANEHQS----LAQEYGI----RGFPTIKVFVPGK 113 (411)
Q Consensus 52 ~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~----~~~~~~i----~~~P~~~~~~~g~ 113 (411)
+|.|+++ +|++|.+....|+.. .|.+-.+|.+.+++ +.+..+- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCE
Confidence 4667777 899999888877654 36677788876553 4444454 68898654 453
No 419
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=86.58 E-value=10 Score=30.03 Aligned_cols=91 Identities=9% Similarity=0.044 Sum_probs=65.7
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEeccccH------------------hHHHhcCCCcc
Q 015217 45 LNANGVVLVEFYAPWCGHCQALTPIW---EKAATVLKGVATVAALDANEHQ------------------SLAQEYGIRGF 103 (411)
Q Consensus 45 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~i~~~~vd~~~~~------------------~~~~~~~i~~~ 103 (411)
....|+.+|+.+++.-..+..+-... +.+.+.++.++.+..-|..... ...+.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 45688999999999876555554433 5566666777777777776542 24556789999
Q ss_pred cEEEEEeCCC----CCcccCCCCCcchhHHHHHHHH
Q 015217 104 PTIKVFVPGK----PPVDYQGARDVKPIAEFALQQI 135 (411)
Q Consensus 104 P~~~~~~~g~----~~~~~~g~~~~~~l~~~~~~~~ 135 (411)
|.+.+..... .+.+..|..++++++.-+...+
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9988885432 2567789999999988887654
No 420
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=3.2 Score=33.70 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=41.3
Q ss_pred cCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEecc---ccHhHHHhcCCC
Q 015217 46 NANGVVLVEFYAP-WCGHCQALTPIWEKAATVLKG-VATVAALDAN---EHQSLAQEYGIR 101 (411)
Q Consensus 46 ~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~---~~~~~~~~~~i~ 101 (411)
-.+++++++||.. +++-|-...-.+.....+++. +..+..|-.| ....+++++++.
T Consensus 28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3577888888864 689999999999998888876 5666666655 345677777765
No 421
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.50 E-value=15 Score=27.52 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=71.2
Q ss_pred EEeCccchHHHHhcC-CCeEEEEEeCCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHH----hhCccc-ccc
Q 015217 163 IELNSSNFDELVLKS-KDLWIVEFFAPWCGHCKKLAPEWKKAANNLKG--KVKLGHVDCDSEKSLM----SKFNVQ-GFP 234 (411)
Q Consensus 163 ~~l~~~~~~~~~~~~-~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~l~----~~~~v~-~~P 234 (411)
..++.++..+..... +...++.|.....+.-.++.+.++++|+.+.. ++.|.-||-+.-+-+. +.|+|. .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 445566666654333 46888999988888889999999999999976 5999999887766443 345654 238
Q ss_pred EEEEEcCCCCCcccc--cCC---CCHHHHHHHHHHH
Q 015217 235 TILVFGADKDSPIPY--EGA---RTAGAIESFALEQ 265 (411)
Q Consensus 235 ~i~~~~~~~~~~~~y--~g~---~~~~~i~~fi~~~ 265 (411)
.|=+..-.....+-+ .+. .+++.+.+||...
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 888875433333333 232 5788999998653
No 422
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.46 E-value=6.8 Score=30.76 Aligned_cols=73 Identities=19% Similarity=0.345 Sum_probs=49.6
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCC----cccEEEEEeCCCCCcccCCCCCcc
Q 015217 50 VVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR----GFPTIKVFVPGKPPVDYQGARDVK 125 (411)
Q Consensus 50 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~----~~P~~~~~~~g~~~~~~~g~~~~~ 125 (411)
.-++.|++|.|+=|..+...++ ...+.+-.+..++-..+-+++||. +--|.++ +|. -.+|....+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 4578899999999987665554 124667777777777777888875 2233333 453 346778888
Q ss_pred hhHHHHHH
Q 015217 126 PIAEFALQ 133 (411)
Q Consensus 126 ~l~~~~~~ 133 (411)
+|..++.+
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 88877764
No 423
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=83.97 E-value=4.3 Score=29.22 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=58.6
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHH-HhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217 49 GVVLVEFYAPWCGHCQALTPIWEKAAT-VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125 (411)
Q Consensus 49 ~~~~v~f~~~~C~~C~~~~~~~~~~~~-~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~ 125 (411)
.+++=.|.+..-+.+++....+.++-+ .+.|.+.+-.||..+++++++.++|-..|+++=..++ ...+.-|..+..
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~~ 79 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSDR 79 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccch
Confidence 456777788888888888888888765 4456788889999999999999999999997644333 356667776543
No 424
>PRK09301 circadian clock protein KaiB; Provisional
Probab=83.80 E-value=4.1 Score=30.25 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=61.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHH-HhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcc
Q 015217 47 ANGVVLVEFYAPWCGHCQALTPIWEKAAT-VLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVK 125 (411)
Q Consensus 47 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~-~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~ 125 (411)
+..+++-.|.+..-+..++....+.++-+ .+.+.+.+-.||..+++++++.++|-..|+++=.-+. ...+.-|..+..
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-CcceeecccccH
Confidence 34678888888888899888888888765 4456788889999999999999999999997644333 356777777644
No 425
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.78 E-value=1.2 Score=30.62 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=37.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc--------------H--hHHHhcCCCcccEEEEEeCCCC
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH--------------Q--SLAQEYGIRGFPTIKVFVPGKP 114 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~--------------~--~~~~~~~i~~~P~~~~~~~g~~ 114 (411)
++|++..|+.|..+..+++++.-.+ -.|++... + +-.+..|.-|+|++ +..+|+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~y------d~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPal-l~~d~~v 75 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDY------DFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPAL-LTDDGKV 75 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCc------eeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEE-EeCCCcE
Confidence 7899999999999888887764333 23343321 1 23566788899996 4566654
No 426
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.79 E-value=2 Score=37.01 Aligned_cols=40 Identities=20% Similarity=0.509 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeC
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEW---KKAANNLKGKVKLGHVDC 218 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~f~~v~~ 218 (411)
++-+|.|++-.|++|..+.+.+ ..+.+.+.+.+.+..+..
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 4669999999999999999876 788888887777766543
No 427
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=82.10 E-value=7.9 Score=26.78 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=43.8
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 181 WIVEFFAPWCGHCKKLAPEWKKAANNL-KGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 181 ~lv~f~~~~c~~c~~~~~~~~~~a~~~-~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
.+.+|-+...+.+......+.++-+.+ .+.+.+-.||...++.+++.++|-.+|+++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 355666655566666666666665554 4579999999999999999999999999764
No 428
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=80.75 E-value=6 Score=31.87 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=36.1
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHhhCcc----ccccEEEE
Q 015217 182 IVEFFAP------WCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKS----LMSKFNV----QGFPTILV 238 (411)
Q Consensus 182 lv~f~~~------~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~----l~~~~~v----~~~P~i~~ 238 (411)
+|+|.++ +|++|+.....+... .+.|-.+|.+.+.. +.+..+. ..+|.|++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 5667777 899999999888754 36677788776554 4444454 56898876
No 429
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.19 E-value=3.9 Score=30.91 Aligned_cols=36 Identities=14% Similarity=0.364 Sum_probs=26.5
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEec
Q 015217 49 GVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDA 88 (411)
Q Consensus 49 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~ 88 (411)
+.++|.|..|.|+-|+.....+.++. +...+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~le----deY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELE----DEYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhh----ccccEEEEEe
Confidence 56899999999999988887775544 4445555553
No 430
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=77.75 E-value=11 Score=29.58 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=31.4
Q ss_pred chhHHhhCccccccEEEEEcCCC----------CCcccccCCCCHHHHHHHHHH
Q 015217 221 EKSLMSKFNVQGFPTILVFGADK----------DSPIPYEGARTAGAIESFALE 264 (411)
Q Consensus 221 ~~~l~~~~~v~~~P~i~~~~~~~----------~~~~~y~g~~~~~~i~~fi~~ 264 (411)
++.+.++|+|+.+|++++.+++. .....-.|+.+.+.-.+.+.+
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 78999999999999999997653 113344577776665555554
No 431
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=77.29 E-value=4.8 Score=30.97 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=25.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~ 92 (411)
..|+.++|+.|++....+++ .++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCCh
Confidence 47899999999999877776 24566667776544
No 432
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=77.08 E-value=24 Score=25.78 Aligned_cols=70 Identities=21% Similarity=0.148 Sum_probs=41.2
Q ss_pred cCCCeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCC-CCCcccccCCCC
Q 015217 176 KSKDLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGAD-KDSPIPYEGART 254 (411)
Q Consensus 176 ~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~-~~~~~~y~g~~~ 254 (411)
.+...++.+|-+.. ..-...|+++|..+++...|...-.+.. ......+ +.+++|++. ......|.|.++
T Consensus 15 ~~kr~iIgYF~~~~----~~eY~~f~kvA~~lr~dC~F~v~~G~~~----~~~~~~~-~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 15 RSKRNIIGYFESKD----SDEYDNFRKVANILRDDCSFLVGFGDVT----KPERPPG-DNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred cCCceEEEEEcCCC----ChhHHHHHHHHHHHhhcCeEEEEecccc----ccccCCC-CCeEEECCCCCCCceEEccCCC
Confidence 33445555554433 4567899999999999866654332211 1111233 445666665 554588999874
No 433
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=76.61 E-value=13 Score=25.79 Aligned_cols=70 Identities=9% Similarity=0.071 Sum_probs=39.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc----cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchh
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPI 127 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l 127 (411)
+..|+.++|+.|++..-.+.... +.+-.++++. .+++.+..+...+|+++. .+|.. .. .....|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~-~l----~es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV-QM----FESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe-EE----EcHHHH
Confidence 45778889999988775555443 2333344432 234444445568899743 22222 21 345567
Q ss_pred HHHHHH
Q 015217 128 AEFALQ 133 (411)
Q Consensus 128 ~~~~~~ 133 (411)
.+|+.+
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 777764
No 434
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.10 E-value=68 Score=29.91 Aligned_cols=176 Identities=11% Similarity=0.169 Sum_probs=112.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCC-CcccCCCCCcch
Q 015217 48 NGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKP-PVDYQGARDVKP 126 (411)
Q Consensus 48 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~-~~~~~g~~~~~~ 126 (411)
..++.+.-........+++...+.+++..- +++.+-..+ ....-|++.+-+.|.. -.+|-|-.-..+
T Consensus 18 ~~~i~l~asldds~~s~~~~~ll~eia~~S-~kis~~~~~-----------~~~RkpSF~i~r~g~~~gv~FAglPlGHE 85 (520)
T COG3634 18 EQPIELVASLDDSEKSKEIKELLDEIASLS-DKISLEEDS-----------DLVRKPSFSINRPGEDQGVRFAGLPLGHE 85 (520)
T ss_pred cCCeEEEEecCcccccHHHHHHHHHHHhhc-cceeeeecC-----------ccccCCceeecCCCcccceEEecCcccch
Confidence 455556666667777777777777777654 455543321 1224488877777744 678888777777
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhHHHHHHHHH
Q 015217 127 IAEFALQQIKALLKERLSGKATGGSSDKSKSDSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAPEWKKAANN 206 (411)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~~~~~~a~~ 206 (411)
+..++...+. .......++.+-+++.-.-+....+=-|++-.|..|-.....+.-++-
T Consensus 86 ftSlVLaLlq---------------------v~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msv- 143 (520)
T COG3634 86 FTSLVLALLQ---------------------VGGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSV- 143 (520)
T ss_pred HHHHHHHHHH---------------------hcCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHh-
Confidence 8887776652 122233344443444222234567777888889999888887765554
Q ss_pred hcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHH
Q 015217 207 LKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFA 262 (411)
Q Consensus 207 ~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi 262 (411)
++.++.-..+|...-.+-.+.-+|-.+|++++ +++ .--+|.++.++|..-+
T Consensus 144 lNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl---nGe--~fg~GRmtleeilaki 194 (520)
T COG3634 144 LNPRIKHTAIDGALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKI 194 (520)
T ss_pred cCCCceeEEecchhhHhHHHhccceecceEEE---cch--hhcccceeHHHHHHHh
Confidence 46678888888655555556668889999887 332 2236778888876554
No 435
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=75.67 E-value=9.6 Score=31.00 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCChhhhhh-hHHHHHHHHHhcCC-e-EEEEEeCCCch---hHHhhCcc
Q 015217 179 DLWIVEFFAPWCGHCKKL-APEWKKAANNLKGK-V-KLGHVDCDSEK---SLMSKFNV 230 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~-~~~~~~~a~~~~~~-~-~f~~v~~~~~~---~l~~~~~v 230 (411)
..++++|-..||+.|..- .+.|.+...+|... + .+.-|.++... .+++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 344554557899999997 99999999999753 5 46667766533 45556665
No 436
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=74.36 E-value=14 Score=26.56 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=51.4
Q ss_pred eEEEEEeCCCChhhhhhhHHHHHHHH-HhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCC
Q 015217 180 LWIVEFFAPWCGHCKKLAPEWKKAAN-NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGART 254 (411)
Q Consensus 180 ~~lv~f~~~~c~~c~~~~~~~~~~a~-~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (411)
..+=+|.+...+.++.....+.++-+ .+.+.+..-.||...++.+++.+++-.+|+++=..+.- .-+.-|+++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P--~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPP--VRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCC--cceeecccc
Confidence 34555666666666776666666644 55567888899999999999999999999977543322 344567664
No 437
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=74.31 E-value=4.8 Score=30.64 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=24.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~ 91 (411)
+..|+.++|+.|++....+++- ++.|-.+|..++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc------CCceEEecccCC
Confidence 3578999999999988777652 356666676544
No 438
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.99 E-value=3.1 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=24.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~ 90 (411)
+..|+.++|+.|++....+++. ++.+-.+|..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc------CCCcEEEeecc
Confidence 3579999999999998777663 34555566654
No 439
>PHA03075 glutaredoxin-like protein; Provisional
Probab=73.93 E-value=3.6 Score=31.07 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=24.7
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLK 208 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~ 208 (411)
+..+++|+.|.|+-|+.....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 457899999999999999998877665553
No 440
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=73.73 E-value=27 Score=24.10 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=41.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
+..|+.++|+.|++..-.+....-. +....+|.....++ +.-+...+|+++.=..|.... -.....|.+|+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~----l~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ----LVDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE----EEcHHHHHHHH
Confidence 4578889999999888655543322 23333333222333 345566889976421111111 13456677777
Q ss_pred HHHH
Q 015217 132 LQQI 135 (411)
Q Consensus 132 ~~~~ 135 (411)
.+.+
T Consensus 73 ~~~~ 76 (77)
T cd03040 73 KTYL 76 (77)
T ss_pred HHHc
Confidence 7653
No 441
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=73.32 E-value=20 Score=24.36 Aligned_cols=51 Identities=6% Similarity=0.035 Sum_probs=33.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-cHhHHHhcCCCcccEEE
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-HQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~ 107 (411)
+.|+.++|+.|++..-.+..... .+....+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999887655544322 34555566543 34565556677899974
No 442
>PRK09301 circadian clock protein KaiB; Provisional
Probab=72.47 E-value=16 Score=27.27 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=53.2
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHH-HhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcCCCCCcccccCCCC
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEWKKAAN-NLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGADKDSPIPYEGART 254 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~-~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~ 254 (411)
...+=+|.+...+..+.....+.++-+ .+.+.+.+-.||...++.+++.++|-.+|+++=..+.- .-+.-|+++
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P--~rriiGDls 80 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPP--VRKIIGDLS 80 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCC--cceeecccc
Confidence 355666777766766777666666644 55567888899999999999999999999976443322 345567764
No 443
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=72.45 E-value=20 Score=24.71 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=44.6
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEeccc-cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217 54 EFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDANE-HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 54 ~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
+++.++|+.|++..-.+.. ++ .+.+..++..+ ...+.+......+|++. .+|.. . .+...|.+|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~-l-----~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV-L-----TDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE-E-----ESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccchhHHHhhcccccceEEE--ECCEE-E-----eCHHHHHHHH
Confidence 4788999999887644433 33 35555666554 35677777788999986 44542 2 2566788888
Q ss_pred HHH
Q 015217 132 LQQ 134 (411)
Q Consensus 132 ~~~ 134 (411)
.+.
T Consensus 68 ~~~ 70 (75)
T PF13417_consen 68 EER 70 (75)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 444
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=72.33 E-value=4.7 Score=31.63 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=29.7
Q ss_pred ccHhHHHhcCCCcccEEEEEeCCC-----------CCcccCCCCCcchhHHHHH
Q 015217 90 EHQSLAQEYGIRGFPTIKVFVPGK-----------PPVDYQGARDVKPIAEFAL 132 (411)
Q Consensus 90 ~~~~~~~~~~i~~~P~~~~~~~g~-----------~~~~~~g~~~~~~l~~~~~ 132 (411)
=+|.+.++|+|+.+|++++..++. ......|..+.+.-.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 478999999999999999887663 1233456666554444443
No 445
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=72.15 E-value=17 Score=27.80 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEEcC
Q 015217 195 KLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVFGA 241 (411)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~~~ 241 (411)
.+.+....+.+.....-.. .+..-++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555555555442111 12233789999999999999999876
No 446
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=70.93 E-value=5.8 Score=27.05 Aligned_cols=52 Identities=6% Similarity=0.100 Sum_probs=32.7
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc----ccHhHHHhcCCCcccEEEE
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----EHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~P~~~~ 108 (411)
..|+.++|+.|++..-.+....- .+....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46888999999988876655432 2333444432 2344555556668899754
No 447
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=70.82 E-value=4.2 Score=30.63 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=24.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~ 91 (411)
+..|+.++|..|++....+.+- ++.+-.+|..++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 3679999999999988776653 345555666544
No 448
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=66.66 E-value=64 Score=28.51 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcCC----e--EEEEEeCCCc--------------------------hhH
Q 015217 178 KDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKGK----V--KLGHVDCDSE--------------------------KSL 224 (411)
Q Consensus 178 ~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~~~----~--~f~~v~~~~~--------------------------~~l 224 (411)
.+-.+++|.-+.||. |-.-...+.++......+ . .|..+|-..+ +.+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 456788888888876 655555555555555442 1 3555553221 236
Q ss_pred HhhCcccccc-------------EEEEE-cCCCCCcccccC-CCCHHHHHHHHHHHhhh
Q 015217 225 MSKFNVQGFP-------------TILVF-GADKDSPIPYEG-ARTAGAIESFALEQLET 268 (411)
Q Consensus 225 ~~~~~v~~~P-------------~i~~~-~~~~~~~~~y~g-~~~~~~i~~fi~~~~~~ 268 (411)
|++|.|..-+ +|++| -+...+.+.|.| ..+.+++.+-|.++...
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 7777664211 34444 233334788887 47889999988888753
No 449
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=66.64 E-value=25 Score=28.67 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCeEEEEEeC-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 015217 178 KDLWIVEFFA-PWCGHCKKLAPEWKKAANNLKG-KVKLGHVDCDS 220 (411)
Q Consensus 178 ~~~~lv~f~~-~~c~~c~~~~~~~~~~a~~~~~-~~~f~~v~~~~ 220 (411)
.+.++++||- .+++.|..-.-.|++...+|.. ...+.-|+.++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds 74 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS 74 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 4477788884 7889999999999999998887 35555555443
No 450
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.18 E-value=7 Score=30.79 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=24.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ 92 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~ 92 (411)
+..|+.++|+.|++....+++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 5689999999999987666543 3455556665443
No 451
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=65.21 E-value=21 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=31.6
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccH--hHHHhcCCCcccEEEE
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQ--SLAQEYGIRGFPTIKV 108 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~--~~~~~~~i~~~P~~~~ 108 (411)
..|+.++|+.|++..-.+..... .+....++..... ++-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 46888999999887766655422 2333444433222 2445567778898754
No 452
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=64.91 E-value=3.9 Score=25.43 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=11.1
Q ss_pred CchhhHHHHHHHHHHH
Q 015217 1 MRRSQLLVILTIFSFF 16 (411)
Q Consensus 1 Mk~~~l~~~~~~~~~~ 16 (411)
||+++++++++.++.+
T Consensus 3 lKKsllLlfflG~ISl 18 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISL 18 (46)
T ss_pred chHHHHHHHHHHHccc
Confidence 7888777666666554
No 453
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=63.93 E-value=4 Score=29.13 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=42.2
Q ss_pred EECCCChhhhhhhHHHHHHHHHh-CCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 55 FYAPWCGHCQALTPIWEKAATVL-KGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 55 f~~~~C~~C~~~~~~~~~~~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
|-+..-+..++....+..+.+.. .+.+.+-.||..+++++++.++|-..|+++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44444556677777777777764 457999999999999999999999999975
No 454
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.96 E-value=11 Score=31.55 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=32.1
Q ss_pred HhHHHhcCCCcccEEEEEeCCCCCcccCC--CCCcchhHHHHHHHH
Q 015217 92 QSLAQEYGIRGFPTIKVFVPGKPPVDYQG--ARDVKPIAEFALQQI 135 (411)
Q Consensus 92 ~~~~~~~~i~~~P~~~~~~~g~~~~~~~g--~~~~~~l~~~~~~~~ 135 (411)
..+++++|+.++|++.+-++|+.-..-.| ..+++.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 57899999999999999998875333334 456677777776554
No 455
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=62.50 E-value=41 Score=24.52 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=44.1
Q ss_pred eEeCChhHHHHhcCCccEEE---------eHHHHHHHHHHhhcCccEEEEecCCCchhhHHHhCCCCCCCCeEEEeecC-
Q 015217 276 TELTSQDVMEEKCGSAAICF---------YLEMLLSVAEKFKRGHYSFVWAAAGKQPDLENRVGVGGYGYPALVALNVK- 345 (411)
Q Consensus 276 ~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~f~~i~~~~~~~~~~~f~~~~~~~P~l~v~~~~- 345 (411)
.++.+.+.+..+...+..++ -...++.+|..+++. ..|...-+... . .... .-+.++++++.
T Consensus 2 kef~~~~eL~~id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~d-C~F~v~~G~~~----~--~~~~-~~~~~i~frp~~ 73 (91)
T cd03070 2 KEFRNLDELNNVDRSKRNIIGYFESKDSDEYDNFRKVANILRDD-CSFLVGFGDVT----K--PERP-PGDNIIYFPPGH 73 (91)
T ss_pred ceecCHHHHHhhCcCCceEEEEEcCCCChhHHHHHHHHHHHhhc-CeEEEEecccc----c--cccC-CCCCeEEECCCC
Confidence 45666667766555555333 237999999999998 77765544211 1 1111 12346677765
Q ss_pred CCccccCCCCC
Q 015217 346 KGVYTPLKSAF 356 (411)
Q Consensus 346 ~~~~~~~~~~~ 356 (411)
......|.|.+
T Consensus 74 ~~~~~~y~G~~ 84 (91)
T cd03070 74 NAPDMVYLGSL 84 (91)
T ss_pred CCCceEEccCC
Confidence 55556777776
No 456
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=62.03 E-value=46 Score=22.45 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=32.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-chhHHhhCccccccEEEE
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDS-EKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~-~~~l~~~~~v~~~P~i~~ 238 (411)
++|+..+|+.|....-.+.+..- .+.+..++... .+.+.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46788999999888766665432 24445555432 234555555667898864
No 457
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=61.08 E-value=7.1 Score=27.85 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=41.2
Q ss_pred EeCCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHhhCccccccEEE
Q 015217 185 FFAPWCGHCKKLAPEWKKAANNL-KGKVKLGHVDCDSEKSLMSKFNVQGFPTIL 237 (411)
Q Consensus 185 f~~~~c~~c~~~~~~~~~~a~~~-~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~ 237 (411)
|-+..-+.+.........+.... .+.+.+-.||...++.+++.++|-.+|+++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 44444455566677777777664 447999999999999999999999999876
No 458
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=61.06 E-value=29 Score=30.62 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=44.3
Q ss_pred CcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhh-hHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEEE
Q 015217 161 ESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKL-APEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILVF 239 (411)
Q Consensus 161 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~-~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~~ 239 (411)
....++..+ +....++.+++....|||.|... ++.+..++ +|.. +.......+. .-.-..+|++.+.
T Consensus 45 ~~~kvsn~d----~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALs-rfGn-~~l~~~~S~~------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 45 NFFKVSNQD----LAPNGKPEVIFIGWEGCPYCAAESWALYIALS-RFGN-FSLEYHYSDP------YDNYPNTPTLIFN 112 (249)
T ss_pred ceeeecCcc----cCCCCeeEEEEEecccCccchhhHHHHHHHHH-hcCC-eeeEEeecCc------ccCCCCCCeEEEe
Confidence 445555443 34567899999999999999665 55555544 4443 3332221111 1112468999987
Q ss_pred cCCCCCccccc
Q 015217 240 GADKDSPIPYE 250 (411)
Q Consensus 240 ~~~~~~~~~y~ 250 (411)
.......+.|.
T Consensus 113 ~~~~~s~v~f~ 123 (249)
T PF06053_consen 113 NYTPNSSVSFY 123 (249)
T ss_pred cCcCCCceEEE
Confidence 55333344443
No 459
>PRK12559 transcriptional regulator Spx; Provisional
Probab=60.86 E-value=10 Score=29.89 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=23.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~ 91 (411)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 5689999999999987666543 344555555433
No 460
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.74 E-value=21 Score=36.12 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCCCcEEeCccchHHHHhcCCCeEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCeEEEEEeCCCchhHHhhC------
Q 015217 158 DSNESIELNSSNFDELVLKSKDLWIVEFFAPWCGHCKKLAP-EW--KKAANNLKGKVKLGHVDCDSEKSLMSKF------ 228 (411)
Q Consensus 158 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~c~~c~~~~~-~~--~~~a~~~~~~~~f~~v~~~~~~~l~~~~------ 228 (411)
++.....-..+.|... ...++|.++.....||--|+-+.. .| .++|..++..+.-+.||-++-+++-+.|
T Consensus 24 nPV~W~pW~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 24 NPVDWYPWGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CCccccccCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence 3444555566777774 677899999999999999998855 45 7899999998999999987766655444
Q ss_pred -cc-ccccEEEEEcCCCCCc--cccc------CCCCHHHHHHHHHHHhh
Q 015217 229 -NV-QGFPTILVFGADKDSP--IPYE------GARTAGAIESFALEQLE 267 (411)
Q Consensus 229 -~v-~~~P~i~~~~~~~~~~--~~y~------g~~~~~~i~~fi~~~~~ 267 (411)
+. .+-|--+++.++++.. -+|- |-....+|..-|.+.|.
T Consensus 103 ~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~ 151 (667)
T COG1331 103 ITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWR 151 (667)
T ss_pred hccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHH
Confidence 33 3578888887655311 1222 11245566666666664
No 461
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=60.71 E-value=30 Score=23.36 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=28.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEE
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~ 107 (411)
..++.++|++|++..-.+....- .+....++-.......+..+-..+|++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEE
Confidence 36788899999877755544322 2333334433323333444556788874
No 462
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=60.23 E-value=33 Score=22.39 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=31.0
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch--hHHhhCccccccEEEE
Q 015217 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEK--SLMSKFNVQGFPTILV 238 (411)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~--~l~~~~~v~~~P~i~~ 238 (411)
+|+.++|+.|......+..... .+....++..... .+.+..+...+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778889999988877766532 2334444432222 2444556667897764
No 463
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=59.49 E-value=22 Score=27.11 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 65 ALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
.+.+.+..+.+.....-.. .+..=++.+.++|+|+.+|++++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555555544431111 23334799999999999999988776
No 464
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=58.20 E-value=6.9 Score=20.77 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=5.9
Q ss_pred CchhhHHHHHHH
Q 015217 1 MRRSQLLVILTI 12 (411)
Q Consensus 1 Mk~~~l~~~~~~ 12 (411)
|||+++.+++++
T Consensus 7 mKkil~~l~a~~ 18 (25)
T PF08139_consen 7 MKKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHHH
Confidence 377554444444
No 465
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=58.14 E-value=9.4 Score=28.58 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.9
Q ss_pred EEEeCCCChhhhhhhHHHHHH
Q 015217 183 VEFFAPWCGHCKKLAPEWKKA 203 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~ 203 (411)
..|+.++|+.|+.....+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 578999999999998887763
No 466
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=58.02 E-value=9.8 Score=26.02 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=32.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc----cHhHHHhcCCCcccEEE
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE----HQSLAQEYGIRGFPTIK 107 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~----~~~~~~~~~i~~~P~~~ 107 (411)
..|+.++|+.|++..-.+..... .+....++..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 47889999999877655554322 34444555432 35566555566889985
No 467
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=57.92 E-value=12 Score=28.55 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=24.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~ 91 (411)
+..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4578999999999988777663 345555666543
No 468
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=56.08 E-value=21 Score=27.40 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=23.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSE 221 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~ 221 (411)
.+|+.++|+.|+.....+.+- .+.|-.+|...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCC
Confidence 468899999999999888762 355555665443
No 469
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=56.04 E-value=64 Score=30.65 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=62.8
Q ss_pred cCCCeEEEEEECCCChhhhhhh--HHHHHHH-HHhCCCeEEEEEecc--ccHhHHHhcCCCcccEEEEEeC-CCCCcccC
Q 015217 46 NANGVVLVEFYAPWCGHCQALT--PIWEKAA-TVLKGVATVAALDAN--EHQSLAQEYGIRGFPTIKVFVP-GKPPVDYQ 119 (411)
Q Consensus 46 ~~~~~~~v~f~~~~C~~C~~~~--~~~~~~~-~~~~~~i~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~-g~~~~~~~ 119 (411)
+.++.++|.|-+-.......+. -++.... +.+-..+..++|+.. ...++..-|-+..+|+++++.. |..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4566788888888888888877 2333333 333334555566554 3346788889999999988865 66688888
Q ss_pred CCCCcchhHHHHHHHH
Q 015217 120 GARDVKPIAEFALQQI 135 (411)
Q Consensus 120 g~~~~~~l~~~~~~~~ 135 (411)
|..++++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999998888776643
No 470
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=55.63 E-value=42 Score=25.41 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=42.9
Q ss_pred EEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217 33 VQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (411)
Q Consensus 33 ~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~ 89 (411)
..++++.+. .-.-+++++||.=.|+.|+.-. -...|+++.+.++. .+.+..+-|+
T Consensus 7 ~~~~G~~v~-l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcn 62 (108)
T PF00255_consen 7 KDIDGKPVS-LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCN 62 (108)
T ss_dssp EBTTSSEEE-GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBS
T ss_pred eCCCCCEEC-HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehH
Confidence 445555555 3344789999999999999998 77799999999984 5778788776
No 471
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=53.55 E-value=71 Score=27.42 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=34.9
Q ss_pred CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhc-C---CeEEEEEeCCCc---hhHHhhCcc
Q 015217 177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLK-G---KVKLGHVDCDSE---KSLMSKFNV 230 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~-~---~~~f~~v~~~~~---~~l~~~~~v 230 (411)
..++++|+|.=+.|+. |-.....+.++.+.+. . ++.+..|.+|-+ ++..++|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4679999999888876 8777777777777766 2 354554444432 344444444
No 472
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.91 E-value=16 Score=25.28 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEEeCCCChhhhhhhHHHHHHH
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAA 204 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a 204 (411)
++|++..||.|......+..+-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 6899999999998887776543
No 473
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.85 E-value=20 Score=30.99 Aligned_cols=40 Identities=35% Similarity=0.479 Sum_probs=31.8
Q ss_pred hHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHHHHHHH
Q 015217 93 SLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFALQQIK 136 (411)
Q Consensus 93 ~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~~~~~~ 136 (411)
..+++.||+++|++++ +++ ....|..+.+.+..-+.+.+.
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHh
Confidence 5688899999999877 443 456789999988888887763
No 474
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=52.75 E-value=17 Score=24.65 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=39.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc-cHhHHHhcCCCcccEEEEEeCCCCCcccCCCCCcchhHHHH
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE-HQSLAQEYGIRGFPTIKVFVPGKPPVDYQGARDVKPIAEFA 131 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~~ 131 (411)
..|+.++|+.|++..-.+....- .+....+|... .+++.+......+|++. .+|.. -....+|.+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 57888999999988766544332 23344455443 34555555666889764 23321 13445666666
Q ss_pred HH
Q 015217 132 LQ 133 (411)
Q Consensus 132 ~~ 133 (411)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 53
No 475
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.60 E-value=1.8e+02 Score=26.01 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCC------ChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHh----cC
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPW------CGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQE----YG 99 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~----~~ 99 (411)
.....|++..-+ .+..=++++-|.+|.+. -..-+.....|++....-+|+|.+-.+|-+.++...++ +|
T Consensus 7 ~k~ysLS~~T~~-~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 7 NKRYSLSDQTKK-VLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCccCCHHHHH-HHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 344566665555 44343445555555444 23333344444444444445899999999777766555 88
Q ss_pred CCccc
Q 015217 100 IRGFP 104 (411)
Q Consensus 100 i~~~P 104 (411)
+...+
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 87733
No 476
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=51.48 E-value=76 Score=22.69 Aligned_cols=54 Identities=7% Similarity=0.192 Sum_probs=33.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc-HhHHHhcCCCcccEEEE
Q 015217 51 VLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH-QSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 51 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~-~~~~~~~~i~~~P~~~~ 108 (411)
.+..|+.+.|+.|++..-.+....- .+....++.... ..+.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4566788899999877654444321 344555555433 33555556678899763
No 477
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=51.36 E-value=18 Score=28.58 Aligned_cols=34 Identities=6% Similarity=0.155 Sum_probs=23.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEH 91 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~ 91 (411)
+..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 4578999999999977655542 355555665533
No 478
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=1.3e+02 Score=24.38 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=41.5
Q ss_pred CcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEecc
Q 015217 31 PVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG-VATVAALDAN 89 (411)
Q Consensus 31 ~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~vd~~ 89 (411)
.+..++.+.+. ...-++++++|.=+|+.|+.--++ ..|+.+.+.+++ .+.+..+-|+
T Consensus 9 ~~~~~~G~~~~-l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 9 SVKDIDGEPVS-LSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred eeeccCCCCcc-HHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEecccc
Confidence 34566666666 444579999999999999988644 477888888876 4666666665
No 479
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=49.79 E-value=1.3e+02 Score=28.74 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCeEEEEEeCCCChhhhhhh-HHHHH--HHHHhcCCeEEEEEeCCCc--hhHHhhCccccccEEEEEcCCCCCcccccC
Q 015217 177 SKDLWIVEFFAPWCGHCKKLA-PEWKK--AANNLKGKVKLGHVDCDSE--KSLMSKFNVQGFPTILVFGADKDSPIPYEG 251 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~c~~~~-~~~~~--~a~~~~~~~~f~~v~~~~~--~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g 251 (411)
.++.++|.|.+........+. -.|.. .+..+...+.-+.|+..+. ..+..-|.+..+|+++++...+.......|
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg 96 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITG 96 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeec
Confidence 456677777765554444444 23322 2333333344445554322 245566778889999999877766677788
Q ss_pred CCCHHHHHHHHHHHhh
Q 015217 252 ARTAGAIESFALEQLE 267 (411)
Q Consensus 252 ~~~~~~i~~fi~~~~~ 267 (411)
-.+.++|..-|.+.|.
T Consensus 97 ~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 97 FVTADELASSIEKVWL 112 (506)
T ss_pred cccHHHHHHHHHHHHH
Confidence 8888898887777665
No 480
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=49.48 E-value=1.2e+02 Score=23.32 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEE-eccccH-----------hHHHhcCCC--cccEEEEEe
Q 015217 47 ANGVVLVEFY-APWCGHCQALTPIWEKAATVLKG-VATVAAL-DANEHQ-----------SLAQEYGIR--GFPTIKVFV 110 (411)
Q Consensus 47 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~i~~~~v-d~~~~~-----------~~~~~~~i~--~~P~~~~~~ 110 (411)
++++++| |. +...+.-+.....+......+.. ++.++.+ +-.... .+-++|++. ++-.+.+=+
T Consensus 9 ~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGK 87 (118)
T PF13778_consen 9 KNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGK 87 (118)
T ss_pred cCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 3444443 43 34555566666677765555554 4544444 333222 788888854 444454447
Q ss_pred CCCCCcccCCCCCcchhHHHHHH
Q 015217 111 PGKPPVDYQGARDVKPIAEFALQ 133 (411)
Q Consensus 111 ~g~~~~~~~g~~~~~~l~~~~~~ 133 (411)
+|+...++..+.+.++|.+.+..
T Consensus 88 DG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 88 DGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CCcEEEecCCCCCHHHHHHHHhC
Confidence 78888899999999988887754
No 481
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.43 E-value=50 Score=26.10 Aligned_cols=75 Identities=23% Similarity=0.316 Sum_probs=52.5
Q ss_pred CeEEEEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCcccc----ccEEEEEcCCCCCcccccCCCC
Q 015217 179 DLWIVEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQG----FPTILVFGADKDSPIPYEGART 254 (411)
Q Consensus 179 ~~~lv~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~----~P~i~~~~~~~~~~~~y~g~~~ 254 (411)
..-++.|++|.|+=|......++. ..+.+-.+..++-..+.+++||.. -=|.++ + .+..+|...
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI---~---Gy~vEGHVP 92 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI---N---GYYVEGHVP 92 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE---c---CEEEeccCC
Confidence 355788999999999888766662 236677777777778888899862 233333 1 234578888
Q ss_pred HHHHHHHHHHH
Q 015217 255 AGAIESFALEQ 265 (411)
Q Consensus 255 ~~~i~~fi~~~ 265 (411)
.+.|..++.+.
T Consensus 93 a~aI~~ll~~~ 103 (149)
T COG3019 93 AEAIARLLAEK 103 (149)
T ss_pred HHHHHHHHhCC
Confidence 88988887654
No 482
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=48.28 E-value=61 Score=28.21 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCcEEeCccchhHHHhcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC----CeEEEEEecc
Q 015217 30 SPVVQLTPNNFKSKVLNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKG----VATVAALDAN 89 (411)
Q Consensus 30 ~~~~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~i~~~~vd~~ 89 (411)
.....+.+.+.. ....+.++||-+-..+|..|..-...|+.+..+++. +|.|..||-.
T Consensus 10 ~p~W~i~~~~pm--~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 10 PPPWKIGGQDPM--LNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCCceECCchHh--hhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 344455554433 345788999999999999999988899888877763 6889888865
No 483
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=47.09 E-value=27 Score=26.42 Aligned_cols=64 Identities=14% Similarity=0.378 Sum_probs=40.1
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHhhCccc--cccEEEEEcCCCCCcccccC
Q 015217 184 EFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQ--GFPTILVFGADKDSPIPYEG 251 (411)
Q Consensus 184 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~--~~P~i~~~~~~~~~~~~y~g 251 (411)
.||...|+-|......+.... -.+.+.|..+.......+.+.++++ ...+.++...++ ...|.|
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~G 66 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG--ERVYRG 66 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC--CEEEEc
Confidence 378999999999998887762 1245777776434445556777765 345455543233 134666
No 484
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=46.95 E-value=19 Score=27.11 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=17.0
Q ss_pred EEEeCCCChhhhhhhHHHHH
Q 015217 183 VEFFAPWCGHCKKLAPEWKK 202 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~ 202 (411)
.+|+.++|+.|+.....+.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 57889999999998877765
No 485
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=46.82 E-value=25 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=22.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccc
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANE 90 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~ 90 (411)
+..|+.|.|..|++....+++- ++.+-.+|.-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehhc
Confidence 4689999999999877666543 34555555543
No 486
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=46.71 E-value=19 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 015217 183 VEFFAPWCGHCKKLAPEWKKAANNLKGKVKLGHVDCD 219 (411)
Q Consensus 183 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~f~~v~~~ 219 (411)
.+|+.++|+.|+.....+.+- .+.|-.+|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~ 32 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIV 32 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEeccc
Confidence 478899999999999877762 3555555544
No 487
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=45.12 E-value=49 Score=29.23 Aligned_cols=60 Identities=12% Similarity=-0.057 Sum_probs=35.5
Q ss_pred hcCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCCcccEEEEEeC
Q 015217 45 LNANGVVLVEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIRGFPTIKVFVP 111 (411)
Q Consensus 45 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 111 (411)
...+|+.+++..+.||+.|....=.+-.+-..+ |++.+.-..-+ . .-.-...|++.|...
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf-Gn~~l~~~~S~-~-----~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRF-GNFSLEYHYSD-P-----YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhc-CCeeeEEeecC-c-----ccCCCCCCeEEEecC
Confidence 357899999999999999966553333333333 44422211111 1 112357899877654
No 488
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=44.64 E-value=25 Score=27.65 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.2
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 015217 182 IVEFFAPWCGHCKKLAPEWKK 202 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~ 202 (411)
+.+|+.++|+.|+.....+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457889999999998876664
No 489
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=44.63 E-value=53 Score=27.23 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=27.3
Q ss_pred CCCeEEEEEeCCCChh-hhhhhHHHHHHHHHhcC---CeEEEEEe
Q 015217 177 SKDLWIVEFFAPWCGH-CKKLAPEWKKAANNLKG---KVKLGHVD 217 (411)
Q Consensus 177 ~~~~~lv~f~~~~c~~-c~~~~~~~~~~a~~~~~---~~~f~~v~ 217 (411)
..++++|.|.-..|+. |......+.++.+.+.. ++.+..|.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~IS 95 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFIS 95 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEE
Confidence 4678899999889965 87777777777666553 34444444
No 490
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=44.48 E-value=15 Score=29.09 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=23.5
Q ss_pred ccCC-CCC-ChhHHHHHHHHHccCCCCCCCCCCCCcceecCCCCCCCCCCCcccccchhhhcc
Q 015217 350 TPLK-SAF-ELEHIVEFVKEAGRGGKGNLPLDGTPSIVKTEPWDGKDGQIIEEDEFSLDELMA 410 (411)
Q Consensus 350 ~~~~-~~~-~~~~i~~fi~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (411)
.+|+ +.+ ..=+++.||++-+.. .+..++.+.++|+|++|++.
T Consensus 38 vKYdRkeLqkRL~vE~WId~qL~e-------------------Ly~~~e~~~p~EIDIDeLLD 81 (144)
T PF05361_consen 38 VKYDRKELQKRLDVEEWIDEQLQE-------------------LYDCQEDEMPEEIDIDELLD 81 (144)
T ss_dssp SSS-SSSSCHHHHHHHHHHHHHHH-------------------CSSSSSTTS-SSSHHHHHHC
T ss_pred EEECHHHHHHHHHHHHHHHHHHHH-------------------HhcCCCCCCCCcccHHHHhc
Confidence 4455 232 335789999988654 11122233344888888874
No 491
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.25 E-value=51 Score=28.60 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=34.7
Q ss_pred hhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHHHHhhhcC
Q 015217 222 KSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFALEQLETNV 270 (411)
Q Consensus 222 ~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~~~~ 270 (411)
...+++.||+++|++++ ++ .+.-+|..+.+-+..-|.+.+....
T Consensus 174 ~~~A~e~gI~gVP~fv~---d~--~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF---DG--KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccCceEEE---cC--cEeecCCCCHHHHHHHHHHHHhccc
Confidence 34688999999999998 22 5667899999998888888776543
No 492
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=43.78 E-value=44 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=29.6
Q ss_pred chhHHhhCccccccEEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 015217 221 EKSLMSKFNVQGFPTILVFGADKDSPIPYEGARTAGAIESFAL 263 (411)
Q Consensus 221 ~~~l~~~~~v~~~P~i~~~~~~~~~~~~y~g~~~~~~i~~fi~ 263 (411)
++.+.++|+|+.+|++++....+ .-...|..+...-.+.+.
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~~--yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQG--YDIIRGNLRVGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCCC--CCEEEecccHHHHHHHHH
Confidence 78999999999999999975422 345567777655444443
No 493
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=42.53 E-value=36 Score=28.47 Aligned_cols=28 Identities=36% Similarity=0.726 Sum_probs=25.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCC
Q 015217 52 LVEFYAPWCGHCQALTPIWEKAATVLKG 79 (411)
Q Consensus 52 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 79 (411)
+.+|+-+.|+.|-...+.+.++.+.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6789999999999999999999999843
No 494
>PRK09810 entericidin A; Provisional
Probab=41.27 E-value=27 Score=21.15 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=6.7
Q ss_pred CchhhHHHHHHHH
Q 015217 1 MRRSQLLVILTIF 13 (411)
Q Consensus 1 Mk~~~l~~~~~~~ 13 (411)
||+++++++++++
T Consensus 2 Mkk~~~l~~~~~~ 14 (41)
T PRK09810 2 MKRLIVLVLLAST 14 (41)
T ss_pred hHHHHHHHHHHHH
Confidence 7775554443333
No 495
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=40.93 E-value=12 Score=22.68 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=7.5
Q ss_pred CchhhHHHHHHHH
Q 015217 1 MRRSQLLVILTIF 13 (411)
Q Consensus 1 Mk~~~l~~~~~~~ 13 (411)
||++++++++++.
T Consensus 1 MkKi~~~~i~~~~ 13 (46)
T PF02402_consen 1 MKKIIFIGIFLLT 13 (46)
T ss_pred CcEEEEeHHHHHH
Confidence 8886654444444
No 496
>COG5510 Predicted small secreted protein [Function unknown]
Probab=40.33 E-value=32 Score=20.96 Aligned_cols=9 Identities=33% Similarity=0.726 Sum_probs=4.7
Q ss_pred CchhhHHHH
Q 015217 1 MRRSQLLVI 9 (411)
Q Consensus 1 Mk~~~l~~~ 9 (411)
||+..++++
T Consensus 2 mk~t~l~i~ 10 (44)
T COG5510 2 MKKTILLIA 10 (44)
T ss_pred chHHHHHHH
Confidence 777544433
No 497
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=40.26 E-value=32 Score=29.39 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCeEEEEEeCCCchhHHhhCccccccEEEE
Q 015217 200 WKKAANNLKGKVKLGHVDCDSEKSLMSKFNVQGFPTILV 238 (411)
Q Consensus 200 ~~~~a~~~~~~~~f~~v~~~~~~~l~~~~~v~~~P~i~~ 238 (411)
+.++++.++..+.|.. ...+.++|||..+|+++-
T Consensus 158 ~~~l~~~l~~~vYfdQ-----~g~Lt~rF~I~~VPavV~ 191 (202)
T TIGR02743 158 VNELEKRLDSRIYFDQ-----HGKLTQKFGIKHVPARVS 191 (202)
T ss_pred HHHHHHHhCCceEEcC-----CchHhhccCceeeceEEE
Confidence 5677888877666643 567999999999999986
No 498
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.13 E-value=31 Score=23.25 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=31.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEecc----ccHhHHHhcCCCcccEEEE
Q 015217 53 VEFYAPWCGHCQALTPIWEKAATVLKGVATVAALDAN----EHQSLAQEYGIRGFPTIKV 108 (411)
Q Consensus 53 v~f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~P~~~~ 108 (411)
..|+.++|+.|++..-.+..... .+....++.. ..+.+.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 46888999999877655544322 2444445532 2344444444567899763
No 499
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=37.45 E-value=56 Score=24.65 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=36.5
Q ss_pred EECCCChhhhhhhHHHHHHHHHhCCCeEEEEEeccccHhHHHhcCCC--cccEEEE-EeCCC
Q 015217 55 FYAPWCGHCQALTPIWEKAATVLKGVATVAALDANEHQSLAQEYGIR--GFPTIKV-FVPGK 113 (411)
Q Consensus 55 f~~~~C~~C~~~~~~~~~~~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~P~~~~-~~~g~ 113 (411)
||--+|+-|......+.+... .+.+.++.+.-....++.+.+++. ..-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 688899999999888777721 346777666445555566777765 3333333 34554
No 500
>PRK12559 transcriptional regulator Spx; Provisional
Probab=37.38 E-value=38 Score=26.63 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=0.0
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 015217 182 IVEFFAPWCGHCKKLAPEWKK 202 (411)
Q Consensus 182 lv~f~~~~c~~c~~~~~~~~~ 202 (411)
+..|+.++|+.|+.....+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Done!