BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015219
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 39/261 (14%)
Query: 81 RVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPT 140
R+L+A+Y P N+Y +H+D +A E + + + F NV V + + V Y T
Sbjct: 101 RLLRAIYMPQNFYCIHVDRKA------EESFLAAVQGIASCFDNVFVASQLESVVYASWT 154
Query: 141 MIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGW 200
+ A L+ + L + +W + INLS D+P+ + +I+ N
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 201 KEYQRARPIIIDPGLYHPKKSGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWD 260
+E + R ++D L + +G+ K P LF GSA+ V+TR ++ + + +
Sbjct: 215 EERWKKRYAVVDGKLTN---TGIV----KAPPPLKTPLFSGSAYFVVTREYVGYVL---E 264
Query: 261 NLPRTLLMYYTNFLSSPEGYFHSVIC----------NHKDYQNTTVNHDLHYIRWDSPPK 310
N LM + SP+ + + I + Y + +N +++W
Sbjct: 265 NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKW----- 319
Query: 311 QHPMTLTLKHFDDMVRSGAPF 331
++F+ V +GAP+
Sbjct: 320 --------QYFEGDVSNGAPY 332
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 39/261 (14%)
Query: 81 RVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPT 140
R+L+A+Y P N+Y +H+D +A E + + + F NV V + + V Y T
Sbjct: 101 RLLRAIYMPQNFYCIHVDRKA------EESFLAAVQGIASCFDNVFVASQLESVVYASWT 154
Query: 141 MIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGW 200
+ A L+ + L + +W + INL D+P+ + +I+ N
Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214
Query: 201 KEYQRARPIIIDPGLYHPKKSGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWD 260
+E + R ++D L + +G+ K P LF GSA+ V+TR ++ + + +
Sbjct: 215 EERWKKRYAVVDGKLTN---TGIV----KAPPPLKTPLFSGSAYFVVTREYVGYVL---E 264
Query: 261 NLPRTLLMYYTNFLSSPEGYFHSVIC----------NHKDYQNTTVNHDLHYIRWDSPPK 310
N LM + SP+ + + I + Y + +N +++W
Sbjct: 265 NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKW----- 319
Query: 311 QHPMTLTLKHFDDMVRSGAPF 331
++F+ V +GAP+
Sbjct: 320 --------QYFEGDVSNGAPY 332
>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
Length = 923
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 134 VTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQ-DDILHIFSYLPKYLNFL 192
V ++GP M +H I+ D +W++ L++ DD+L +F P + +F
Sbjct: 16 VLFQGPAMATKKVH---IISHSHWDREWYMAYEQHHMRLINLIDDLLEVFQTDPDFHSFH 72
Query: 193 EHTSSIGWKEYQRARP 208
+I +Y + RP
Sbjct: 73 LDGQTIILDDYLKVRP 88
>pdb|1JMX|A Chain A, Crystal Structure Of A Quinohemoprotein Amine
Dehydrogenase From Pseudomonas Putida
pdb|1JMZ|A Chain A, Crystal Structure Of A Quinohemoprotein Amine
Dehydrogenase From Pseudomonas Putida With Inhibitor
Length = 494
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 149 VAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHT-------SSIGWK 201
VA+ + AK+W+ +N +P + +LP L + S W
Sbjct: 109 VALQRRPAKEWEHLVNFHLGQWPSLEYQAQARDRDWLPIALQQVVPDLAKRYPLESAAWA 168
Query: 202 EYQRARP 208
E+Q+ARP
Sbjct: 169 EWQKARP 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,355,425
Number of Sequences: 62578
Number of extensions: 532826
Number of successful extensions: 898
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 8
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)