Query 015219
Match_columns 411
No_of_seqs 233 out of 874
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 3E-116 7E-121 893.7 37.0 397 10-411 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 2.6E-66 5.6E-71 534.1 20.8 333 58-409 97-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 1.7E-53 3.8E-58 407.2 17.3 238 65-325 1-244 (244)
4 TIGR03469 HonB hopene-associat 94.4 2.6 5.6E-05 43.2 17.5 107 59-171 36-146 (384)
5 TIGR03472 HpnI hopanoid biosyn 88.6 19 0.0004 36.7 15.7 105 62-183 40-149 (373)
6 PRK11204 N-glycosyltransferase 88.1 13 0.00029 38.0 14.4 105 60-182 51-159 (420)
7 TIGR03111 glyc2_xrt_Gpos1 puta 85.9 30 0.00065 36.1 15.7 107 60-183 46-157 (439)
8 cd02525 Succinoglycan_BP_ExoA 85.9 12 0.00025 34.5 11.5 99 64-182 1-103 (249)
9 PRK14716 bacteriophage N4 adso 84.3 13 0.00028 39.9 12.3 102 61-173 64-173 (504)
10 cd06439 CESA_like_1 CESA_like_ 83.1 26 0.00056 32.7 12.6 104 58-183 24-132 (251)
11 PTZ00260 dolichyl-phosphate be 82.0 42 0.00092 33.8 14.4 112 59-183 66-188 (333)
12 cd06437 CESA_CaSu_A2 Cellulose 80.4 16 0.00035 33.7 10.1 103 63-180 1-107 (232)
13 PF13641 Glyco_tranf_2_3: Glyc 79.0 6.3 0.00014 36.2 6.8 113 63-193 1-120 (228)
14 PRK10063 putative glycosyl tra 78.7 54 0.0012 31.4 13.4 101 63-182 1-106 (248)
15 COG1216 Predicted glycosyltran 78.5 15 0.00033 36.1 9.7 91 62-169 2-94 (305)
16 PRK07132 DNA polymerase III su 78.4 19 0.0004 36.1 10.3 97 62-167 16-128 (299)
17 PRK14583 hmsR N-glycosyltransf 78.3 88 0.0019 32.6 15.8 94 61-172 73-169 (444)
18 cd06421 CESA_CelA_like CESA_Ce 77.6 29 0.00062 31.7 10.8 103 63-183 1-107 (234)
19 PF08660 Alg14: Oligosaccharid 75.6 25 0.00054 32.1 9.6 124 68-196 3-131 (170)
20 TIGR03030 CelA cellulose synth 74.3 83 0.0018 35.2 15.0 116 60-192 128-262 (713)
21 cd02520 Glucosylceramide_synth 73.7 52 0.0011 29.6 11.3 103 63-182 1-108 (196)
22 PF00535 Glycos_transf_2: Glyc 73.5 23 0.0005 29.7 8.4 100 67-184 2-105 (169)
23 PRK05454 glucosyltransferase M 71.6 1.5E+02 0.0033 33.2 16.2 126 57-193 118-255 (691)
24 TIGR01556 rhamnosyltran L-rham 70.7 28 0.0006 33.5 9.2 85 72-172 3-87 (281)
25 PF07521 RMMBL: RNA-metabolisi 70.5 2.8 6E-05 29.5 1.5 29 69-99 14-42 (43)
26 cd06434 GT2_HAS Hyaluronan syn 69.7 56 0.0012 29.8 10.7 92 65-174 2-93 (235)
27 cd04179 DPM_DPG-synthase_like 69.5 51 0.0011 28.7 10.0 107 68-193 2-113 (185)
28 cd04184 GT2_RfbC_Mx_like Myxoc 66.3 94 0.002 27.5 11.6 104 63-182 1-108 (202)
29 cd02511 Beta4Glucosyltransfera 64.0 87 0.0019 29.1 10.8 96 64-183 1-97 (229)
30 PRK10073 putative glycosyl tra 63.9 90 0.0019 31.3 11.5 93 62-172 5-99 (328)
31 cd02526 GT2_RfbF_like RfbF is 62.6 89 0.0019 28.5 10.6 95 68-181 2-96 (237)
32 PRK05917 DNA polymerase III su 61.9 44 0.00095 33.4 8.6 98 62-168 17-134 (290)
33 cd04192 GT_2_like_e Subfamily 61.5 1.2E+02 0.0026 27.3 11.1 98 68-182 2-104 (229)
34 PRK07276 DNA polymerase III su 60.8 53 0.0012 32.7 9.0 25 62-86 22-46 (290)
35 PRK05818 DNA polymerase III su 59.2 51 0.0011 32.5 8.4 35 134-168 93-127 (261)
36 cd04187 DPM1_like_bac Bacteria 58.9 1.2E+02 0.0027 26.4 10.9 96 68-183 2-103 (181)
37 cd06427 CESA_like_2 CESA_like_ 58.4 1E+02 0.0022 28.7 10.2 94 63-172 1-98 (241)
38 cd04186 GT_2_like_c Subfamily 56.9 1.2E+02 0.0026 25.5 10.1 84 68-172 2-88 (166)
39 PLN02726 dolichyl-phosphate be 56.6 1.7E+02 0.0037 27.3 13.5 106 60-182 6-115 (243)
40 cd06913 beta3GnTL1_like Beta 1 55.7 1.3E+02 0.0029 27.2 10.4 104 68-182 2-109 (219)
41 PRK11234 nfrB bacteriophage N4 54.5 83 0.0018 35.5 10.2 103 59-172 59-169 (727)
42 cd04196 GT_2_like_d Subfamily 52.9 1.4E+02 0.0031 26.4 10.0 97 67-182 2-101 (214)
43 cd06423 CESA_like CESA_like is 50.3 1.5E+02 0.0032 24.6 9.6 96 68-181 2-99 (180)
44 cd02510 pp-GalNAc-T pp-GalNAc- 50.2 1.9E+02 0.0041 27.9 11.0 99 67-182 2-105 (299)
45 PRK07993 DNA polymerase III su 46.7 1.3E+02 0.0027 30.6 9.3 98 62-168 22-147 (334)
46 PRK06581 DNA polymerase III su 46.2 2E+02 0.0042 28.4 10.0 98 62-168 13-128 (263)
47 PRK08058 DNA polymerase III su 45.1 1.9E+02 0.0041 29.0 10.3 97 62-167 26-148 (329)
48 PF07747 MTH865: MTH865-like f 44.5 11 0.00024 30.0 1.0 18 165-182 11-28 (75)
49 cd06442 DPM1_like DPM1_like re 44.1 2.1E+02 0.0045 25.7 9.7 96 68-182 2-100 (224)
50 PF12273 RCR: Chitin synthesis 44.1 19 0.00042 31.2 2.6 19 13-31 1-19 (130)
51 cd04185 GT_2_like_b Subfamily 43.6 2.3E+02 0.0051 25.1 11.1 90 68-172 2-93 (202)
52 cd00761 Glyco_tranf_GTA_type G 42.7 1.8E+02 0.0038 23.4 10.1 89 68-173 2-92 (156)
53 PRK05707 DNA polymerase III su 40.2 2.3E+02 0.0049 28.7 9.9 101 61-169 19-146 (328)
54 cd06433 GT_2_WfgS_like WfgS an 39.2 2.5E+02 0.0055 24.2 10.4 87 67-173 2-90 (202)
55 cd02522 GT_2_like_a GT_2_like_ 37.6 2.3E+02 0.005 25.4 8.9 91 66-182 2-94 (221)
56 COG4746 Uncharacterized protei 35.7 21 0.00045 28.5 1.3 18 166-183 17-34 (80)
57 PRK15489 nfrB bacteriophage N4 35.7 3.1E+02 0.0066 31.0 10.8 118 61-193 69-195 (703)
58 PRK11498 bcsA cellulose syntha 35.3 7.6E+02 0.017 28.6 15.3 112 61-193 258-374 (852)
59 PRK05564 DNA polymerase III su 34.8 3.5E+02 0.0075 26.7 10.3 99 61-167 23-131 (313)
60 COG1215 Glycosyltransferases, 33.0 5.3E+02 0.011 26.0 13.2 106 62-183 53-163 (439)
61 PRK06871 DNA polymerase III su 32.1 1.5E+02 0.0032 30.1 7.1 81 80-168 65-146 (325)
62 cd06420 GT2_Chondriotin_Pol_N 32.0 3.3E+02 0.0072 23.4 11.7 97 68-182 2-101 (182)
63 cd04188 DPG_synthase DPG_synth 31.1 2.6E+02 0.0056 25.1 8.1 97 68-183 2-105 (211)
64 PF13177 DNA_pol3_delta2: DNA 30.9 3.8E+02 0.0083 23.8 9.7 98 62-167 17-140 (162)
65 PRK10714 undecaprenyl phosphat 30.1 5.7E+02 0.012 25.5 13.3 108 60-185 3-115 (325)
66 cd06438 EpsO_like EpsO protein 29.7 3.9E+02 0.0084 23.4 11.0 96 68-180 2-101 (183)
67 PF11051 Mannosyl_trans3: Mann 29.4 1.9E+02 0.0041 28.3 7.2 100 67-179 4-111 (271)
68 cd00006 PTS_IIA_man PTS_IIA, P 27.8 3.6E+02 0.0077 22.7 7.8 92 67-173 3-96 (122)
69 PRK06925 flagellar motor prote 26.8 83 0.0018 30.0 4.1 30 1-30 1-33 (230)
70 PRK07414 cob(I)yrinic acid a,c 26.5 5.2E+02 0.011 23.9 11.1 107 76-193 36-153 (178)
71 cd02514 GT13_GLCNAC-TI GT13_GL 26.3 5.5E+02 0.012 26.2 10.0 98 65-174 2-113 (334)
72 PF02572 CobA_CobO_BtuR: ATP:c 25.7 3.4E+02 0.0073 25.0 7.7 107 77-193 19-134 (172)
73 cd06435 CESA_NdvC_like NdvC_li 25.7 5.1E+02 0.011 23.5 10.5 103 67-183 2-107 (236)
74 PRK08309 short chain dehydroge 25.5 5.1E+02 0.011 23.5 9.9 83 75-168 32-114 (177)
75 cd02537 GT8_Glycogenin Glycoge 24.9 5.4E+02 0.012 24.3 9.4 108 65-180 1-111 (240)
76 PRK05986 cob(I)alamin adenolsy 24.5 5.9E+02 0.013 23.8 11.3 106 77-193 38-153 (191)
77 PRK08769 DNA polymerase III su 23.8 4.9E+02 0.011 26.2 9.1 38 124-168 115-152 (319)
78 PRK00576 molybdopterin-guanine 23.7 4.8E+02 0.01 23.1 8.3 84 76-183 15-98 (178)
79 cd04195 GT2_AmsE_like GT2_AmsE 23.3 5.1E+02 0.011 22.7 11.1 89 67-173 2-95 (201)
80 PRK14952 DNA polymerase III su 22.4 7.4E+02 0.016 27.3 10.7 98 62-167 33-156 (584)
81 COG3618 Predicted metal-depend 20.6 4.6E+02 0.01 26.1 7.9 92 75-177 145-244 (279)
82 PF09837 DUF2064: Uncharacteri 20.5 5.4E+02 0.012 21.9 8.0 80 88-187 8-87 (122)
83 KOG1752 Glutaredoxin and relat 20.1 3.8E+02 0.0082 22.5 6.3 61 76-145 27-87 (104)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=3.4e-116 Score=893.72 Aligned_cols=397 Identities=56% Similarity=1.030 Sum_probs=366.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHhh---h-cCCC-------------CCCCCCCCcccc-cccc-cCCCCCCCCcEEEEEE
Q 015219 10 LDRTWLPPLISISLLSLLIILTVT---F-SHSR-------------SSSSSSDFTVSD-QILD-SRFGQPALPRLAYLIS 70 (411)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-------------~~~~~~~~~~~~-~~~~-~~~~~~~~~~iAYlIl 70 (411)
.++||++|++++++++++|+++++ + ++++ .+++.+.|++++ .+.+ ..+..++||||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~ 85 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS 85 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence 478999999999999988766443 1 1111 133344566766 3222 1234556999999999
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHH
Q 015219 71 GTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVA 150 (411)
Q Consensus 71 ~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~ 150 (411)
||++|.++++|||++||||+|+||||+|+||+..++++++..++.+|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus 86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~ 165 (421)
T PLN03183 86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA 165 (421)
T ss_pred ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEecCCcccccChhHHHHHHccCCCccceEeeecCCCCcccccccccccCCCCccCCCCcceeccccC
Q 015219 151 ILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRARPIIIDPGLYHPKKSGVFWAKEKR 230 (411)
Q Consensus 151 ~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly~~~~~~~~~~~~kR 230 (411)
.||+.+.+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++++|+++++++||+|..+++.++|.+++|
T Consensus 166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R 245 (421)
T PLN03183 166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245 (421)
T ss_pred HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence 99998899999999999999999999988888889999999999988999999999999999999988888889999999
Q ss_pred CCCCcceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCCchhhhhhhcCcccccccccCceeEEecCCCCC
Q 015219 231 SMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYYTNFLSSPEGYFHSVICNHKDYQNTTVNHDLHYIRWDSPPK 310 (411)
Q Consensus 231 ~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~p~~ll~yf~~~~~pdE~yFqTvl~Ns~~f~~t~vn~nLRyi~W~~~~~ 310 (411)
.+|.++++|+||+|++|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+++++
T Consensus 246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~ 325 (421)
T PLN03183 246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK 325 (421)
T ss_pred cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccCHHHHHHHHcCCCcEEeccCCChHHHHHHHHHHhccCCCCCCCCeeeecCCCCCCCCccccCCCCccCCCcchH
Q 015219 311 QHPMTLTLKHFDDMVRSGAPFARKFAKDDPVLNKIDENLLKRSNNRFTPGGWCVGNSAFGKDPCLVYGNPYAIKPSVNSK 390 (411)
Q Consensus 311 ~~P~~l~~~D~~~l~~S~alFARKF~~d~~vLd~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~c~~~g~~~~~~pg~~~~ 390 (411)
+||++|+++||++|++|+++|||||+.|++|||+||+++++|..++++|||||.| .||||+|||+++|||||||+
T Consensus 326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~-----~~~c~~~~~~~~~~p~~~~~ 400 (421)
T PLN03183 326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG-----KPKCSRVGDPAKIKPGPGAQ 400 (421)
T ss_pred CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC-----CCcccccCCcCccCCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999986 57999999999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCCC
Q 015219 391 TLEKLIVKLLDPEIFRSKQCK 411 (411)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~ 411 (411)
||++||++||++++||++||+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 401 RLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHHHHHHhchhccccccCC
Confidence 999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-66 Score=534.13 Aligned_cols=333 Identities=44% Similarity=0.755 Sum_probs=307.1
Q ss_pred CCCCCC-cEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeee
Q 015219 58 GQPALP-RLAYLISGTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTY 136 (411)
Q Consensus 58 ~~~~~~-~iAYlIl~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 136 (411)
..+.++ .+||+.++|+ |.++++|+|+|+|||+|.||||||++|++++|..++ +++.|++||+|++++..|+|
T Consensus 97 s~~~~~~~~a~~~~v~k-d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~------~L~~cf~NV~v~~k~~~v~~ 169 (439)
T KOG0799|consen 97 SKELKPFPAAFLRVVYK-DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQ------QLASCFPNVIVLPKRESVTY 169 (439)
T ss_pred cccccccceEEEEeecc-cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHH------HHHhcCCceEEeccccceec
Confidence 344455 5555555555 999999999999999999999999999999997766 46789999999999999999
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHccCCCccceEeeecCCCCcccccccccccCCCCc
Q 015219 137 KGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRARPIIIDPGLY 216 (411)
Q Consensus 137 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly 216 (411)
||+|+++|+|+||+.|++.+.+|||||||||+|||||||+||+++|+.+ +|.|||++++..+|+..++.++.+.+++ |
T Consensus 170 ~G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~ 247 (439)
T KOG0799|consen 170 GGHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-Y 247 (439)
T ss_pred CCchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-h
Confidence 9999999999999999999889999999999999999999999999876 6899999999999999989888888998 7
Q ss_pred cCCCCcceeccccCCCCCcceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCCchhhhhhhcCcccccccc
Q 015219 217 HPKKSGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYYTNFLSSPEGYFHSVICNHKDYQNTTV 296 (411)
Q Consensus 217 ~~~~~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~p~~ll~yf~~~~~pdE~yFqTvl~Ns~~f~~t~v 296 (411)
+.+++.+.|.. +|.++++|+||.|++|||+||+||+++ ++|+++++||+++++|||+||||++||+ |..+.+
T Consensus 248 ~~~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~ 319 (439)
T KOG0799|consen 248 FRNKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGV 319 (439)
T ss_pred heecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCc
Confidence 77788887765 899999999999999999999999995 8999999999999999999999999998 888889
Q ss_pred cCc--eeEEecCC----CCCCCCcccCHHHHHHHHcCCC-cEEeccC--CChHHHHHHHHHHhccCCCCCCCCeeeecCC
Q 015219 297 NHD--LHYIRWDS----PPKQHPMTLTLKHFDDMVRSGA-PFARKFA--KDDPVLNKIDENLLKRSNNRFTPGGWCVGNS 367 (411)
Q Consensus 297 n~n--LRyi~W~~----~~~~~P~~l~~~D~~~l~~S~a-lFARKF~--~d~~vLd~Id~~ll~r~~~~~~~g~w~~~~~ 367 (411)
+++ +||+.|+. ++++||+.++..|+..|..++. .|||||. .++++++.+|.+++++.....++|+|| ..
T Consensus 320 ~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~--~~ 397 (439)
T KOG0799|consen 320 FNDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWC--DH 397 (439)
T ss_pred ccchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCccccc--cc
Confidence 999 99999998 6788999999999999999998 9999999 489999999999999988878999999 77
Q ss_pred CCCCCCccccCCCCccCCCcchHHHHHHHHHhcCCCCccCCC
Q 015219 368 AFGKDPCLVYGNPYAIKPSVNSKTLEKLIVKLLDPEIFRSKQ 409 (411)
Q Consensus 368 ~~~~~~c~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 409 (411)
.++.++|+..++...+.|||++.|++.++..++..++|+..|
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 398 SLRTLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred ccccccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 778999999999999999999999999999999999999876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.7e-53 Score=407.23 Aligned_cols=238 Identities=34% Similarity=0.514 Sum_probs=160.1
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 65 LAYLISGTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 65 iAYlIl~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
|||||++|++|++++++|++++|+|+|.||||||+|++...++++++. ..+++||++++++..|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~------~~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKL------ISCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHH------HCT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHh------cccCCceeecccccccccCCccHHHH
Confidence 799999998899999999999999999999999999998888877753 46899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHccCCCccceEeeecCCCCcccccccccccCCCCccCCCCcce
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRARPIIIDPGLYHPKKSGVF 224 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly~~~~~~~~ 224 (411)
||.||+.|++...+|||||||||+||||+|+++|.++|+..+++.+|+++....++....|+.+...++..+.
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~------- 147 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPF------- 147 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEE-------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccc-------
Confidence 9999999999767999999999999999999999999987767789999887654432234433222221111
Q ss_pred eccccCCCCCcceeeecceeeeecHHHHHHhhhccCCchHHHHHhh-cCCCCCCCchhhhhhhcCcccccccccCceeEE
Q 015219 225 WAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYY-TNFLSSPEGYFHSVICNHKDYQNTTVNHDLHYI 303 (411)
Q Consensus 225 ~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~p~~ll~yf-~~~~~pdE~yFqTvl~Ns~~f~~t~vn~nLRyi 303 (411)
..++ ++|+|||||+|||++|+||+. |..+...+++| +++++|||.|||||++|++.|.++++|+++|||
T Consensus 148 --~~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 148 --FRKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp --EEEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred --cccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 0111 899999999999999999996 44444445555 599999999999999999889999999999999
Q ss_pred ecCCCCCCCC-----cccCHHHHHHHH
Q 015219 304 RWDSPPKQHP-----MTLTLKHFDDMV 325 (411)
Q Consensus 304 ~W~~~~~~~P-----~~l~~~D~~~l~ 325 (411)
+|++..+.|| |.+|++|+++|.
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 9994444555 556888888873
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.45 E-value=2.6 Score=43.20 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=68.7
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcc-eee
Q 015219 59 QPALPRLAYLISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKA-DLV 134 (411)
Q Consensus 59 ~~~~~~iAYlIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~-~~V 134 (411)
.+..|++..+|-+++ ..+.+.++|+.|.. |.+.=+|-+|..|++...+.++++.+..| ..++++++... ...
T Consensus 36 ~~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~ 111 (384)
T TIGR03469 36 PEAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCC
Confidence 345688999999998 67999999999853 43445678888887766555554432211 12378888632 233
Q ss_pred eeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCccc
Q 015219 135 TYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYP 171 (411)
Q Consensus 135 ~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyP 171 (411)
.|+| ...|.-.+++.+-+...+-||++.+.+.+.+
T Consensus 112 g~~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 112 GWSG--KLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred CCcc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 4554 3344445555554333347899999998876
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=88.56 E-value=19 Score=36.71 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCc--eEEeCcceeeee
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVY---HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKN--VMVIGKADLVTY 136 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~~~~V~w 136 (411)
.|++..+|-+++ ..+.+++.|+.+- .|+-.++| +|..+++...+.++++. +.+++ |+++.......|
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~------~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLR------ADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHH------HhCCCCceEEEECCCCCCC
Confidence 577999999997 5678888888774 36545544 66666655444444332 24555 555543322223
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 137 KGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 137 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
.+ -+.+..++ ++. .+.||++.+.+.+.| +.+-|.+...
T Consensus 112 ~~--K~~~l~~~----~~~-a~ge~i~~~DaD~~~--~p~~L~~lv~ 149 (373)
T TIGR03472 112 NR--KVSNLINM----LPH-ARHDILVIADSDISV--GPDYLRQVVA 149 (373)
T ss_pred Ch--HHHHHHHH----HHh-ccCCEEEEECCCCCc--ChhHHHHHHH
Confidence 22 33333333 232 257999999888776 5555555443
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.07 E-value=13 Score=38.03 Aligned_cols=105 Identities=13% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeee
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVY---HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTY 136 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 136 (411)
+..|+++.+|-+|+ ..+.+.+.++++. .|+..+ |=+|..++++..+.+++.. ..++++.++.... .
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~ei-iVvdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYEV-IAINDGSSDNTGEILDRLA------AQIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHHH------HhCCcEEEEEcCC---C
Confidence 34578999999998 6788999888874 354444 5567666666555554432 3467888876221 1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHH
Q 015219 137 KGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIF 182 (411)
Q Consensus 137 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~f 182 (411)
+| ...| +...++. .+.||++.+.+.+.|-.. .+++.+.|
T Consensus 120 ~G--ka~a----ln~g~~~-a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 120 QG--KANA----LNTGAAA-ARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred CC--HHHH----HHHHHHH-cCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 23 2222 2233333 357999999999987332 23444444
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=85.92 E-value=30 Score=36.12 Aligned_cols=107 Identities=10% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEE-EEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeee
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVY---HPMNYY-VLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVT 135 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n~y-~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 135 (411)
+..|+++.+|-+|+ ..+.+.++|+++. .|...+ +|=+|..++++..+.+++.. ..++++.++.... .
T Consensus 46 ~~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCC--C
Confidence 34578999999998 6799999998884 344333 66778877776554444322 2456776642111 1
Q ss_pred eCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHHc
Q 015219 136 YKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIFS 183 (411)
Q Consensus 136 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~fs 183 (411)
+|.+ .++..+++.. +-||++.+.+.+.|-.. .+++...|.
T Consensus 117 -~Gka------~AlN~gl~~s-~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 117 -QGKA------KALNAAIYNS-IGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred -CCHH------HHHHHHHHHc-cCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 3321 1222333332 35899999999998332 234444443
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.89 E-value=12 Score=34.51 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=60.7
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHc---CC-CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCc
Q 015219 64 RLAYLISGTKGDGARVKRVLQAVY---HP-MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGP 139 (411)
Q Consensus 64 ~iAYlIl~hk~d~~~l~RLl~aLy---hp-~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 139 (411)
+++.+|.+++ +.+.+.++|..+. .| .+.=+|=+|..++++..+.++.+ ....++|+++..... |
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~------~~~~~~v~~i~~~~~----~- 68 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEY------AAKDPRIRLIDNPKR----I- 68 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHH------HhcCCeEEEEeCCCC----C-
Confidence 4678888887 7889999988884 22 23335566776766555555443 234567888864321 2
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
...|--.+++.+ +.||++.|.+.|.+ +.+.|.+.+
T Consensus 69 -~~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 69 -QSAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred -chHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHH
Confidence 122333333322 57999999999986 555555544
No 9
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=84.31 E-value=13 Score=39.92 Aligned_cols=102 Identities=8% Similarity=0.029 Sum_probs=61.4
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeee
Q 015219 61 ALPRLAYLISGTKGDGARVKRVLQA----VYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTY 136 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~~~l~RLl~a----Lyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 136 (411)
+.|+++.+|-+|+ ..+.+.++|+. ++.|+-.++|=.|. ++++..+.+++. ...+|||+++..+. -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~-ndd~T~~~v~~l------~~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYP-NDPATLREVDRL------AARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECC-CChhHHHHHHHH------HHHCCCeEEEEeCC---C
Confidence 4789999999998 67777777764 33465455554453 444433334332 24578887653211 1
Q ss_pred CCccHHHHHHHHHHHHHh----cCCCCcEEEEecCCccccc
Q 015219 137 KGPTMIAATLHAVAILLK----QAKDWDWFINLSASDYPLM 173 (411)
Q Consensus 137 gg~S~V~AtL~~~~~lL~----~~~~wdyfi~LSgsDyPL~ 173 (411)
|+.+-..|--.+++.+.. .+.++|+++.+.+.|.|=.
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~P 173 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHP 173 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCc
Confidence 334555555455554432 2346899999999888543
No 10
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=83.12 E-value=26 Score=32.65 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEEEecCCCHHHHHHHHHHHcC---CC--CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcce
Q 015219 58 GQPALPRLAYLISGTKGDGARVKRVLQAVYH---PM--NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKAD 132 (411)
Q Consensus 58 ~~~~~~~iAYlIl~hk~d~~~l~RLl~aLyh---p~--n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~ 132 (411)
.....|+++.+|.+++ ..+.+.++|+.+.. +. ..++|..|. +++...+.++++. .. +|.++....
T Consensus 24 ~~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~-s~d~t~~~~~~~~-------~~-~v~~i~~~~ 93 (251)
T cd06439 24 DPAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDG-STDGTAEIAREYA-------DK-GVKLLRFPE 93 (251)
T ss_pred CCCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECC-CCccHHHHHHHHh-------hC-cEEEEEcCC
Confidence 3455789999999998 67889988888742 33 245555554 5544444443321 11 677764322
Q ss_pred eeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 133 LVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 133 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
. . +...|--.+++.+ .-||++++.+.+.|- .+.|...+.
T Consensus 94 ~---~--g~~~a~n~gi~~a-----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 94 R---R--GKAAALNRALALA-----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred C---C--ChHHHHHHHHHHc-----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 1 2 3444444444433 239999999999995 555555444
No 11
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=81.99 E-value=42 Score=33.77 Aligned_cols=112 Identities=11% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC----------CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEe
Q 015219 59 QPALPRLAYLISGTKGDGARVKRVLQAVYH----------PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVI 128 (411)
Q Consensus 59 ~~~~~~iAYlIl~hk~d~~~l~RLl~aLyh----------p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv 128 (411)
.++.+.+..+|-+++ ..+.+.++|+.+.. ..+.=+|=||-.|++...+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 456789999999998 67888888877642 22344677787777665555544432110 001347777
Q ss_pred CcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcc-cccChhHHHHHHc
Q 015219 129 GKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDY-PLMSQDDILHIFS 183 (411)
Q Consensus 129 ~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDy-PL~t~~~l~~~fs 183 (411)
..... .| .-.|.-.+++.+ .-||++++.+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G--~~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KG--KGGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CC--hHHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43221 12 223333333322 2378888887664 3333444555443
No 12
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=80.45 E-value=16 Score=33.74 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=58.2
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYH---PM-NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKG 138 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyh---p~-n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 138 (411)
|++..+|.+|+ ..+.|.++|++|.. |. ..-+|=+|. +++...+.+++..+..+ ....+|.++...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 46889999998 78999999999853 32 234456886 66655555554332111 112455555332221 2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHH
Q 015219 139 PTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILH 180 (411)
Q Consensus 139 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~ 180 (411)
+ ...| +...++.. +.+|++++.+.+++ ..+-|.+
T Consensus 74 ~-k~~a----~n~g~~~a-~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 Y-KAGA----LAEGMKVA-KGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred C-chHH----HHHHHHhC-CCCEEEEEcCCCCC--ChHHHHH
Confidence 2 1111 12223322 57999999998886 4444444
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=78.99 E-value=6.3 Score=36.17 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=54.1
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCc--eEEeCcceeeeeC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKN--VMVIGKADLVTYK 137 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~~~~V~wg 137 (411)
|+++.+|.+++ ..+.+.++|.++-+ ++-.++| +|..++++..+.+++..+ .+++ |+++..... .
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~~---~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPRN---P 69 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCCC---C
Confidence 56999999997 78899999999964 4444444 565454443333443322 3333 566643211 1
Q ss_pred Cc-cHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHccC-CCccceEe
Q 015219 138 GP-TMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYL-PKYLNFLE 193 (411)
Q Consensus 138 g~-S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~-~~~~NFIe 193 (411)
|. +...|.-++++. . +.||++.|.+.+.| ..+-|...+... ..+...+.
T Consensus 70 g~~~k~~a~n~~~~~----~-~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNEALAA----A-RGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHHHHHh----c-CCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 21 333444444443 2 47899999999888 444344433222 34555554
No 14
>PRK10063 putative glycosyl transferase; Provisional
Probab=78.73 E-value=54 Score=31.38 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=63.1
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC-----CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYH-----PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYK 137 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyh-----p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 137 (411)
|++..+|.+++ ..+.+.+.|+.+.. ..+.=+|-+|..|++...+.++++. ...++.++..++ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 67889999998 78889998888841 2345578899988877655454321 112577765322 2
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 138 GPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 138 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
|. -.|.-.+++.+ .-+|++.|.+.|...-...++...+
T Consensus 69 G~--~~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GI--YDAMNKGIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CH--HHHHHHHHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 32 23333344432 2489999999999876443444344
No 15
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=78.48 E-value=15 Score=36.10 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=60.9
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCCCC--EEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCc
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVYHPMN--YYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGP 139 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLyhp~n--~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 139 (411)
.++++-+|..|. ..+.+...|..|..... .++|=+|..+++...+.++.. .+++|.++.......|+|-
T Consensus 2 ~~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg 72 (305)
T COG1216 2 MPKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGG 72 (305)
T ss_pred CcceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhh
Confidence 377888999998 68888888888863332 333356888888776666531 1789999986666666553
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASD 169 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsD 169 (411)
.. .+++.++..+. + ++++-..|
T Consensus 73 ~n-----~g~~~a~~~~~--~-~~l~LN~D 94 (305)
T COG1216 73 FN-----RGIKYALAKGD--D-YVLLLNPD 94 (305)
T ss_pred hh-----HHHHHHhcCCC--c-EEEEEcCC
Confidence 33 57777876432 3 45555566
No 16
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=78.44 E-value=19 Score=36.08 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=55.6
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHH-----------cCCCCEEEEEEeCCCChHHHHHHHHhhhhhcccc---ccCce
Q 015219 62 LPRLAYLISGTKGDG--ARVKRVLQAV-----------YHPMNYYVLHLDLEASDGERLELAKYVKSEKVIR---DFKNV 125 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~--~~l~RLl~aL-----------yhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~---~~~NV 125 (411)
...+|||+.|..|-. .....+.+++ .||+|.++ +|.....-..++++...+..+... .-..|
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKDLSKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCcCCHHHHHHHHHHhccCCcccCCceE
Confidence 588999999887532 3445555665 26655444 472111111233444333333222 23466
Q ss_pred EEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 015219 126 MVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSA 167 (411)
Q Consensus 126 ~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 167 (411)
.++.+. -.|-.+..+++-..|+++++..+||+++.
T Consensus 94 vII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 94 LIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred EEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 666653 24444455566667778889999999886
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=78.32 E-value=88 Score=32.62 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeC
Q 015219 61 ALPRLAYLISGTKGDGARVKRVLQAVY---HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYK 137 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 137 (411)
..|+++.+|-+|+ +.+.+.++++++- .|+-. +|-+|..++++..+.+++.. ..++++.++... ..+
T Consensus 73 ~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~------~~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALL------AEDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHH------HhCCCEEEEEeC---CCC
Confidence 3578999999998 6778888888874 35434 56677767666555555432 245678877421 123
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 138 GPTMIAATLHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 138 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
| .. .++...++. .+.||++.+.+.+.|-
T Consensus 142 G--ka----~AlN~gl~~-a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 142 G--KA----IALRMGAAA-ARSEYLVCIDGDALLD 169 (444)
T ss_pred C--HH----HHHHHHHHh-CCCCEEEEECCCCCcC
Confidence 3 22 223333333 3689999999999873
No 18
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=77.58 E-value=29 Score=31.66 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCC-EEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYH---PMN-YYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKG 138 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyh---p~n-~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 138 (411)
|++..+|-+++.+.+.++++|+.+-. |+. .=+|=+|-.+++...+.++++. ... ++.++... ..+|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~-~~~~~~~~--~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG------VEY-GYRYLTRP--DNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh------ccc-CceEEEeC--CCCCC
Confidence 46888899997446778888888842 331 2234467766665544444321 111 44444322 23333
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 139 PTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 139 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
.. .+.-.++ +.. +.||++.|.+.|++ ..+-|.+...
T Consensus 72 ~~--~~~n~~~----~~a-~~d~i~~lD~D~~~--~~~~l~~l~~ 107 (234)
T cd06421 72 KA--GNLNNAL----AHT-TGDFVAILDADHVP--TPDFLRRTLG 107 (234)
T ss_pred cH--HHHHHHH----HhC-CCCEEEEEccccCc--CccHHHHHHH
Confidence 21 1112222 222 57999999999988 3455555443
No 19
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=75.65 E-value=25 Score=32.11 Aligned_cols=124 Identities=21% Similarity=0.280 Sum_probs=72.6
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 68 LISGTKGDGARVKRVLQAV----YHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aL----yhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
+++++.|-..+|.+|++.+ +.++.+++=.-|. .+...-.++.+......-....+..+-+.+. -.+.-++.+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~-~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK-QSRSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc-ccHHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 5667777889999999999 6554333333333 2222111222211100001223444444332 1233578888
Q ss_pred HHHHHHHHHHhcCCCCc-EEEEecCCcccccChhHHHHHHccCCCccceEeeec
Q 015219 144 ATLHAVAILLKQAKDWD-WFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTS 196 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wd-yfi~LSgsDyPL~t~~~l~~~fs~~~~~~NFIe~~~ 196 (411)
+.+.|+..+++.. -| -+-|=.|.++|+.=..-+...|.-.....-|||...
T Consensus 80 ~~~~~~~il~r~r--Pdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRER--PDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhC--CCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8999999988754 34 344567889999988888877754444568888754
No 20
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=74.25 E-value=83 Score=35.24 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHH---cCCC-CEEEEEEeCCCChH--------------HHHHHHHhhhhhccccc
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAV---YHPM-NYYVLHLDLEASDG--------------ERLELAKYVKSEKVIRD 121 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aL---yhp~-n~y~IHvD~ks~~~--------------~~~~l~~~v~~~~~~~~ 121 (411)
+..|+++.+|-+|+.+.+.++++++++ +.|. +.=++=+|-.+++. .+.++++..+ +
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~------~ 201 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR------K 201 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH------H
Confidence 345789999999986666667777665 3453 33345556655432 1334443322 2
Q ss_pred cCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccCh-hHHHHHHccCCCccceE
Q 015219 122 FKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQ-DDILHIFSYLPKYLNFL 192 (411)
Q Consensus 122 ~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~-~~l~~~fs~~~~~~NFI 192 (411)
.+|+++.+... .++-. .++..+++.. +-||++.+.+.+.|-... .++..+|.. +.+..++
T Consensus 202 -~~v~yi~r~~n--~~~KA------gnLN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 202 -LGVNYITRPRN--VHAKA------GNINNALKHT-DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred -cCcEEEECCCC--CCCCh------HHHHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 36777754322 22211 1222334433 459999999999985432 344445542 2344444
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=73.73 E-value=52 Score=29.58 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccC--ceEEeCcceeeeeC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVY---HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFK--NVMVIGKADLVTYK 137 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~--NV~vv~~~~~V~wg 137 (411)
|++..+|-+++ ..+.+.++|+.+. +|... +|=||-.+++...+.++++.+ .++ ++.++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~e-iivVdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYE-ILFCVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeE-EEEEeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 45888999998 5667888888885 24433 455666666655555544332 234 34444322222 2
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 138 GPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 138 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
+.....+ +..+++.. ..||++.+.+.+.+ +.+-|.+.+
T Consensus 71 ~~~~~~~----~n~g~~~a-~~d~i~~~D~D~~~--~~~~l~~l~ 108 (196)
T cd02520 71 INPKVNN----LIKGYEEA-RYDILVISDSDISV--PPDYLRRMV 108 (196)
T ss_pred CCHhHHH----HHHHHHhC-CCCEEEEECCCceE--ChhHHHHHH
Confidence 2222222 22233332 46999999887764 556655544
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=73.46 E-value=23 Score=29.72 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=62.0
Q ss_pred EEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 67 YLISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 67 YlIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
.+|.+++ ..+.|.++|..|-. +...+ |=+|..++++..+.++++.+ ...++.++..... ...-.
T Consensus 2 vvip~~n-~~~~l~~~l~sl~~q~~~~~ei-ivvdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~ 68 (169)
T PF00535_consen 2 VVIPTYN-EAEYLERTLESLLKQTDPDFEI-IVVDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSA 68 (169)
T ss_dssp EEEEESS--TTTHHHHHHHHHHHSGCEEEE-EEEECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHH
T ss_pred EEEEeeC-CHHHHHHHHHHHhhccCCCEEE-EEeccccccccccccccccc------ccccccccccccc-----ccccc
Confidence 3567776 57888888887752 33444 55666666666666665432 3568888864422 14444
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHHcc
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIFSY 184 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~fs~ 184 (411)
+.-.+++.+. -+|+..+.+.|++... .+++.+.+..
T Consensus 69 ~~n~~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 69 ARNRGIKHAK-----GEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred cccccccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 5555555542 3599999999999887 7777777765
No 23
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=71.64 E-value=1.5e+02 Score=33.20 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCCCCCCcEEEEEEecCCCHH----HHHHHHHHHc---CCCCEEEEEEeCCCChHH----HHHHHHhhhhhccccccCce
Q 015219 57 FGQPALPRLAYLISGTKGDGA----RVKRVLQAVY---HPMNYYVLHLDLEASDGE----RLELAKYVKSEKVIRDFKNV 125 (411)
Q Consensus 57 ~~~~~~~~iAYlIl~hk~d~~----~l~RLl~aLy---hp~n~y~IHvD~ks~~~~----~~~l~~~v~~~~~~~~~~NV 125 (411)
.+.+..++.+.+|-+|+.|++ .++..++.+. ++++..++=+|-.++++. ++.+++..+. ....++|
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~---~~~~~~i 194 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAE---LGGEGRI 194 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHh---cCCCCcE
Confidence 345667899999999997765 4555555443 445555566665555432 1222221111 1123577
Q ss_pred EEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHHccCCCccceEe
Q 015219 126 MVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIFSYLPKYLNFLE 193 (411)
Q Consensus 126 ~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~fs~~~~~~NFIe 193 (411)
++..+.... |. -.- +....+-+.+.++||++.|.+...|-.. ..++...|.. +.+.-.|.
T Consensus 195 ~yr~R~~n~---~~-KaG---Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 195 FYRRRRRNV---GR-KAG---NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred EEEECCcCC---Cc-cHH---HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 775433222 22 111 1112222234579999999998886543 3455555542 33455554
No 24
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=70.69 E-value=28 Score=33.46 Aligned_cols=85 Identities=9% Similarity=0.052 Sum_probs=55.1
Q ss_pred cCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHH
Q 015219 72 TKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAI 151 (411)
Q Consensus 72 hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~ 151 (411)
++.+.+.|+++|++|.. ++.-+|=||..++.. +.+... ....++|+++...... ..-.|-=.+++.
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~------~~~~~~i~~i~~~~N~-----G~a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNA------RLRGQKIALIHLGDNQ-----GIAGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHH------hccCCCeEEEECCCCc-----chHHHHHHHHHH
Confidence 44357899999999974 556788999886533 222221 2346789988643222 222344455666
Q ss_pred HHhcCCCCcEEEEecCCcccc
Q 015219 152 LLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 152 lL~~~~~wdyfi~LSgsDyPL 172 (411)
+++ .+.||++.|...+.|-
T Consensus 69 a~~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFR--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred HHH--CCCCEEEEECCCCCCC
Confidence 665 3689999999999986
No 25
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=70.53 E-value=2.8 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=24.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEEEeC
Q 015219 69 ISGTKGDGARVKRVLQAVYHPMNYYVLHLDL 99 (411)
Q Consensus 69 Il~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ 99 (411)
.++|. |.+.|..+++.+ .|++.++||=|.
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCCC
Confidence 46787 999999999999 799999999653
No 26
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=69.68 E-value=56 Score=29.84 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=56.3
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 65 LAYLISGTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 65 iAYlIl~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
+..+|.+|+...+.+.++|+.+......=+|=+|-.++++....+.. ....+.+.++.. ..+| ...|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~-------~~~~~~~~v~~~----~~~g--~~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQ-------TVKYGGIFVITV----PHPG--KRRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHh-------hccCCcEEEEec----CCCC--hHHH
Confidence 56788999843399999999998643333455566666554444421 123455666543 2344 3333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCcccccC
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLMS 174 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~t 174 (411)
.-.+++.+ +-||++.|.+.+.|-..
T Consensus 69 ~n~g~~~a-----~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 69 LAEGIRHV-----TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHHHHh-----CCCEEEEECCCceeChh
Confidence 33344332 57999999999998744
No 27
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=69.48 E-value=51 Score=28.74 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=60.3
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYHP----MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyhp----~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
+|.+|+ ..+.+.++|+.+..- .+.=+|=+|..+++...+.++.+.. ..+.++++..... .+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~n-----~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSRN-----FGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccCC-----CCccH
Confidence 466776 678888888888532 2444677777776666665654432 3444444432211 12334
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHcc-CCCccceEe
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSY-LPKYLNFLE 193 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~-~~~~~NFIe 193 (411)
|...+++.+ .. ||++.|.+.|.+ +.+.|...+.. ...+.+.+-
T Consensus 70 a~n~g~~~a----~g-d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAA----RG-DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHh----cC-CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 444444443 22 899999999875 55556555543 233444543
No 28
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.35 E-value=94 Score=27.50 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=57.6
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHH-HHhhhhhccccccCceEEeCcceeeeeCCc
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLEL-AKYVKSEKVIRDFKNVMVIGKADLVTYKGP 139 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l-~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 139 (411)
|++..+|.+++.+.+.+.++|+.|..- .+.-+|=+|..+++..-+++ +.+. ...+++.++.... ..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~------~~~~~~~~~~~~~-----~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYA------AQDPRIKVVFREE-----NG 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHH------hcCCCEEEEEccc-----CC
Confidence 468889999984339999999998632 23334666666655432222 2211 1235676653221 12
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHH
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIF 182 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~f 182 (411)
....|--.+++.+ .-||+..+.+.|.+-.. .+.+.+.+
T Consensus 70 g~~~a~n~g~~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 70 GISAATNSALELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CHHHHHHHHHHhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 3344444444432 35899999888876322 24444444
No 29
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=64.04 E-value=87 Score=29.12 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=57.8
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 64 RLAYLISGTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 64 ~iAYlIl~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
++..+|.+++ ..+.+.++|+.|..--.. +|=||..|++...+ +.+ ..++.|+.. .|+|++.-
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~~~e-iivvD~gStD~t~~-i~~----------~~~~~v~~~----~~~g~~~~- 62 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWAVDE-IIVVDSGSTDRTVE-IAK----------EYGAKVYQR----WWDGFGAQ- 62 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcccCE-EEEEeCCCCccHHH-HHH----------HcCCEEEEC----CCCChHHH-
Confidence 4678889988 788999999999632133 45688877765433 321 235666542 56665422
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHHc
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIFS 183 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~fs 183 (411)
.+ .++... .-||++.|.+.+.+-.. .+++.+.+.
T Consensus 63 --~n---~~~~~a-~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 63 --RN---FALELA-TNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred --HH---HHHHhC-CCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 22 222222 34699999999986433 334555554
No 30
>PRK10073 putative glycosyl transferase; Provisional
Probab=63.93 E-value=90 Score=31.27 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=60.2
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCc
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGP 139 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 139 (411)
.|.+..+|-+++ ..+.|.+.|+.|... .+.=+|=||-.|++...+.++++. ...++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~------~~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA------ENYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH------hhCCCEEEEECCC----CCh
Confidence 467999999998 578999999999632 234456667667666555555443 2467888886432 343
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
..|--.+++.+ .=+|+..|.+.|+..
T Consensus 74 --~~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 --SVARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred --HHHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 33333333332 238999999999954
No 31
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=62.57 E-value=89 Score=28.53 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=58.7
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLH 147 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~ 147 (411)
+|.++++..+.+.++|+.+... +.-+|=+|..+++.... ...+ ..+++.++.... + .| ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~-~~~~--------~~~~i~~i~~~~--n-~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIEL-RLRL--------NSEKIELIHLGE--N-LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHH-Hhhc--------cCCcEEEEECCC--c-ee--hHHhhhH
Confidence 5677874449999999999865 44566688876554322 2110 246777775322 1 22 3333334
Q ss_pred HHHHHHhcCCCCcEEEEecCCcccccChhHHHHH
Q 015219 148 AVAILLKQAKDWDWFINLSASDYPLMSQDDILHI 181 (411)
Q Consensus 148 ~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~ 181 (411)
+++.+.. .+.||+++|.+.+++ ..+.|...
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l 96 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVP--PPDMVEKL 96 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCc--CHhHHHHH
Confidence 4444433 268999999999986 46666665
No 32
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=61.87 E-value=44 Score=33.37 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=52.5
Q ss_pred CCcEEEEEEecCCCH--HH---------------HHHHHHHHcCCCCEEEEEEeCCC---ChHHHHHHHHhhhhhccccc
Q 015219 62 LPRLAYLISGTKGDG--AR---------------VKRVLQAVYHPMNYYVLHLDLEA---SDGERLELAKYVKSEKVIRD 121 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~--~~---------------l~RLl~aLyhp~n~y~IHvD~ks---~~~~~~~l~~~v~~~~~~~~ 121 (411)
.+.+|||+.|..|.. .. -.+.+....|||-++ |--|.+. +.++-.++.+.+...|...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~- 94 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYES- 94 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCC-
Confidence 578899998876522 11 123344455888443 3334332 3334334444443323211
Q ss_pred cCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 015219 122 FKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSAS 168 (411)
Q Consensus 122 ~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 168 (411)
.-.|.++. ..-.|-...-+++--.|+++++.-+||+++.+
T Consensus 95 ~~kv~ii~-------~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 95 PYKIYIIH-------EADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CceEEEEe-------chhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 22344443 34455555556666667778888888888865
No 33
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.47 E-value=1.2e+02 Score=27.26 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=52.7
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHH
Q 015219 68 LISGTKGDGARVKRVLQAVY---HPM--NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMI 142 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLy---hp~--n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 142 (411)
+|.+++ +.+.+.++|+.|. +|. ..++ =||-.+++...+.++ +.. ....++|.++.... ...+| ..
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~eii-vvdd~s~d~t~~~~~-~~~----~~~~~~v~~~~~~~-~~~~g--~~ 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEVI-LVDDHSTDGTVQILE-FAA----AKPNFQLKILNNSR-VSISG--KK 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEEE-EEcCCCCcChHHHHH-HHH----hCCCcceEEeeccC-cccch--hH
Confidence 566676 7899999999884 343 3444 455555554433333 211 12245677765322 11222 22
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 143 AATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 143 ~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
.|-- ..++.. .-||++.+.+.+.+ ..+.|.+.+
T Consensus 72 ~a~n----~g~~~~-~~d~i~~~D~D~~~--~~~~l~~l~ 104 (229)
T cd04192 72 NALT----TAIKAA-KGDWIVTTDADCVV--PSNWLLTFV 104 (229)
T ss_pred HHHH----HHHHHh-cCCEEEEECCCccc--CHHHHHHHH
Confidence 2222 222322 46999999999976 345555544
No 34
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=60.83 E-value=53 Score=32.74 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=15.1
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHH
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAV 86 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aL 86 (411)
.+.+|||+.|..|.......+.++|
T Consensus 22 rl~hAyLf~G~~G~~~~A~~~A~~l 46 (290)
T PRK07276 22 RLNHAYLFSGDFASFEMALFLAQSL 46 (290)
T ss_pred CcceeeeeeCCccHHHHHHHHHHHH
Confidence 5778899888765433333444444
No 35
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=59.23 E-value=51 Score=32.46 Aligned_cols=35 Identities=9% Similarity=0.111 Sum_probs=24.2
Q ss_pred eeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 015219 134 VTYKGPTMIAATLHAVAILLKQAKDWDWFINLSAS 168 (411)
Q Consensus 134 V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 168 (411)
+-|..-.|-.+.-+++--.|+++++..+||++|.+
T Consensus 93 II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~ 127 (261)
T PRK05818 93 IIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRN 127 (261)
T ss_pred EeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECC
Confidence 44444466666666666677788888888888854
No 36
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=58.92 E-value=1.2e+02 Score=26.40 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=50.8
Q ss_pred EEEecCCCHHHHHHHHHHHc------CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccH
Q 015219 68 LISGTKGDGARVKRVLQAVY------HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTM 141 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLy------hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 141 (411)
+|.+|+ ..+.+.++++.|. .+.-. +|=+|-.+++...+.++.+. ...+||.++... ...| .
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~e-iivvdd~s~d~t~~~~~~~~------~~~~~i~~i~~~--~n~G---~ 68 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYE-IIFVDDGSTDRTLEILRELA------ARDPRVKVIRLS--RNFG---Q 68 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeE-EEEEeCCCCccHHHHHHHHH------hhCCCEEEEEec--CCCC---c
Confidence 567776 6778887776653 12223 44467777766544444332 245688877522 1222 2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 142 IAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 142 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
..|.-.+++.+ . -||++.+.+.+. + +.+.+...+.
T Consensus 69 ~~a~n~g~~~a----~-~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 69 QAALLAGLDHA----R-GDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHHhc----C-CCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 33333333332 2 388888886544 4 3444444443
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=58.44 E-value=1e+02 Score=28.73 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=53.0
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYH---PM-NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKG 138 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyh---p~-n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 138 (411)
|.+..+|.+++ ..+.+.++|+.+.. |. +.=+|-||..+++...+.++++.. ....+|.++... ...|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-----~~~~~i~~~~~~---~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-----PSIFRVVVVPPS---QPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-----CCCeeEEEecCC---CCCc
Confidence 46888999998 67899999999853 32 223566676676665554443210 011234443321 2223
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 139 PTMIAATLHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 139 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
.+ .|-- ..++.. .-||++.+.+.|.+-
T Consensus 72 ~~--~a~n----~g~~~a-~gd~i~~~DaD~~~~ 98 (241)
T cd06427 72 KP--KACN----YALAFA-RGEYVVIYDAEDAPD 98 (241)
T ss_pred hH--HHHH----HHHHhc-CCCEEEEEcCCCCCC
Confidence 22 2222 233333 359999999988854
No 38
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.87 E-value=1.2e+02 Score=25.49 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
+|.+++ ..+.+.++++.|.. +...++| +|..+.+...+.+.+. .+++.++.... ..+...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~---------~~~~~~~~~~~-----~~g~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLREL---------FPEVRLIRNGE-----NLGFGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHh---------CCCeEEEecCC-----CcChHHH
Confidence 566776 68999999999963 2334444 6666666655555431 23566654321 1123334
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
--.+++.+ +.+|++.+.+.+++-
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~~ 88 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVVE 88 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEEC
Confidence 33444433 579999999888864
No 39
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=56.56 E-value=1.7e+02 Score=27.27 Aligned_cols=106 Identities=8% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc----CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeee
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVY----HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVT 135 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLy----hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 135 (411)
+..|++..+|-+++ ..+.+..++..+. ...+.=+|-+|-.|++...+.++++.+.. ...+|.++....
T Consensus 6 ~~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~--- 77 (243)
T PLN02726 6 EGAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG--- 77 (243)
T ss_pred CCCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC---
Confidence 34578999999997 6777777666552 23244467788877776555444332110 123566553211
Q ss_pred eCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 136 YKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 136 wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
-.|. -.|...+++.+ .-+|++.+.+.+.+ ..+.|...+
T Consensus 78 n~G~--~~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~ 115 (243)
T PLN02726 78 KLGL--GTAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFI 115 (243)
T ss_pred CCCH--HHHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHH
Confidence 1232 22333333322 35899999998873 555555444
No 40
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=55.68 E-value=1.3e+02 Score=27.25 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=57.8
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
+|.+++ ..+.|.++|+.|.. +++.=+|-+|..+++...+.++++.+.. ...+++++.....-. .+-+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSP-SPKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCC-CCccHHHH
Confidence 577787 68999999999963 3344578888888776655555543211 123555542111001 11223333
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHH
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIF 182 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~f 182 (411)
.-.+++. . .-||++.|.+.|++.-. .+.+...+
T Consensus 76 ~N~g~~~----a-~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 76 KNQAIAQ----S-SGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHHHHh----c-CCCEEEEECCCccCChhHHHHHHHHH
Confidence 3333332 2 35899999999985443 23344444
No 41
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=54.52 E-value=83 Score=35.47 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=59.2
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHH----HHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceee
Q 015219 59 QPALPRLAYLISGTKGDGARVKRVLQ----AVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLV 134 (411)
Q Consensus 59 ~~~~~~iAYlIl~hk~d~~~l~RLl~----aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 134 (411)
.+.+++++.+|=+|+ ....+.+++. +++.|+-.+++=+|.. ++.-.+.+++ +.+.+|+++++-...
T Consensus 59 ~~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~------l~~~~p~~~~v~~~~-- 128 (727)
T PRK11234 59 KPDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDA------VCARFPNVHKVVCAR-- 128 (727)
T ss_pred cCCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHH------HHHHCCCcEEEEeCC--
Confidence 345689999999998 6776666666 4567886666666533 2222233332 224578887543211
Q ss_pred eeCCccHHHHHHHHHHHHHhc----CCCCcEEEEecCCcccc
Q 015219 135 TYKGPTMIAATLHAVAILLKQ----AKDWDWFINLSASDYPL 172 (411)
Q Consensus 135 ~wgg~S~V~AtL~~~~~lL~~----~~~wdyfi~LSgsDyPL 172 (411)
-|.-+-..|--.+++.+.+. +.+++.++.+.+.|.|=
T Consensus 129 -~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~ 169 (727)
T PRK11234 129 -PGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVIS 169 (727)
T ss_pred -CCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCC
Confidence 12223444444444444321 23678888888888753
No 42
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.93 E-value=1.4e+02 Score=26.39 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChHHHHHHHHhhhhhccccccC-ceEEeCcceeeeeCCccHHH
Q 015219 67 YLISGTKGDGARVKRVLQAVYHPM--NYYVLHLDLEASDGERLELAKYVKSEKVIRDFK-NVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 67 YlIl~hk~d~~~l~RLl~aLyhp~--n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~-NV~vv~~~~~V~wgg~S~V~ 143 (411)
.+|-+++ ..+.|.+.|..+.... ..=+|=+|..+++...+.++.+.+ .++ ++.++.. -.+.+...
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~------~~~~~~~~~~~-----~~~~G~~~ 69 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID------KDPFIIILIRN-----GKNLGVAR 69 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh------cCCceEEEEeC-----CCCccHHH
Confidence 4677787 6788999998886421 233566777777766655655432 222 3444432 22334444
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
+.-.+ ++. .+.+|+++|.+.|++. .+.|.+.+
T Consensus 70 ~~n~g----~~~-~~g~~v~~ld~Dd~~~--~~~l~~~~ 101 (214)
T cd04196 70 NFESL----LQA-ADGDYVFFCDQDDIWL--PDKLERLL 101 (214)
T ss_pred HHHHH----HHh-CCCCEEEEECCCcccC--hhHHHHHH
Confidence 43333 222 3579999999998875 34444443
No 43
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=50.28 E-value=1.5e+02 Score=24.59 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYHPM--NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAAT 145 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyhp~--n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 145 (411)
+|.+++ ..+.+.++|+.+.... +.=+|=+|-.+++...+.+..+... ...++.++... ...| ...|-
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~~ 70 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGAL 70 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHHH
Confidence 466776 6799999999986431 3334446666665554444432211 11334443221 1122 33333
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHH
Q 015219 146 LHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHI 181 (411)
Q Consensus 146 L~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~ 181 (411)
-.+++.+ .-+|++.+.+.|++ +.+.|...
T Consensus 71 n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 71 NAGLRHA-----KGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHHhc-----CCCEEEEECCCCCc--ChHHHHHH
Confidence 3333332 57899999998877 44555544
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=50.19 E-value=1.9e+02 Score=27.95 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=59.6
Q ss_pred EEEEecCCCH-HHHHHHHHHHcC---CC-CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccH
Q 015219 67 YLISGTKGDG-ARVKRVLQAVYH---PM-NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTM 141 (411)
Q Consensus 67 YlIl~hk~d~-~~l~RLl~aLyh---p~-n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 141 (411)
.+|.++. .. +.+.++|..|.. +. ..=+|-||..|++.....+.+... ....++|+++..... .| .
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G--~ 71 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EG--L 71 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CC--H
Confidence 4677777 56 999999999863 21 124799999887766554433111 124578998853211 23 3
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 142 IAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 142 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
..|--.+++.+ .-||++.|.+.+.+ +.+-|...+
T Consensus 72 ~~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 72 IRARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred HHHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHH
Confidence 34433444432 34899999999887 444444433
No 45
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=46.74 E-value=1.3e+02 Score=30.57 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=56.5
Q ss_pred CCcEEEEEEecCCCHH-------------------------HHHHHHHHHcCCCCEEEEEEeCC-C--ChHHHHHHHHhh
Q 015219 62 LPRLAYLISGTKGDGA-------------------------RVKRVLQAVYHPMNYYVLHLDLE-A--SDGERLELAKYV 113 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~-------------------------~l~RLl~aLyhp~n~y~IHvD~k-s--~~~~~~~l~~~v 113 (411)
.+.+|||+.|-.|-+. .-.|++.+-.|||-++ |--+.+ . +.++-.++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHHH
Confidence 5788999887765321 1235566667888543 333322 2 233333444443
Q ss_pred hhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 015219 114 KSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSAS 168 (411)
Q Consensus 114 ~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 168 (411)
...|... .-.|.++...+ .|-.+.-+++-..|+++++.-+||+++.+
T Consensus 101 ~~~~~~g-~~kV~iI~~ae-------~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 101 YEHARLG-GAKVVWLPDAA-------LLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred hhccccC-CceEEEEcchH-------hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3223211 22455555443 56666667776777888899999999965
No 46
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=46.16 E-value=2e+02 Score=28.43 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=51.3
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHH-H--------cCCCCEEEEEEeCC-------CChHHHHHHHHhhhhhccccccC
Q 015219 62 LPRLAYLISGTKGDG--ARVKRVLQA-V--------YHPMNYYVLHLDLE-------ASDGERLELAKYVKSEKVIRDFK 123 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~--~~l~RLl~a-L--------yhp~n~y~IHvD~k-------s~~~~~~~l~~~v~~~~~~~~~~ 123 (411)
.+.+|||+.|..++. ..+..++.+ + .||+- ++|--+.+ -+.++-.++...+...|... .-
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~-~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g-~~ 90 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDY-HFIARETSATSNAKNISIEQIRKLQDFLSKTSAIS-GY 90 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCE-EEEeccccccccCCcccHHHHHHHHHHHhhCcccC-Cc
Confidence 478999999875321 222222222 2 46763 33432321 12333334554443333211 22
Q ss_pred ceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 015219 124 NVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSAS 168 (411)
Q Consensus 124 NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 168 (411)
.|.++. ..-.|-.+.-+++--.|+++++..+|++++.+
T Consensus 91 KViII~-------~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 91 KVAIIY-------SAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred EEEEEe-------chHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 344443 34455555556666667788888999999865
No 47
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=45.11 E-value=1.9e+02 Score=29.02 Aligned_cols=97 Identities=24% Similarity=0.276 Sum_probs=51.1
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHHc-----------------------CCCCEEEEEEeCCC-ChHHHHHHHHhhhh
Q 015219 62 LPRLAYLISGTKGDG--ARVKRVLQAVY-----------------------HPMNYYVLHLDLEA-SDGERLELAKYVKS 115 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~--~~l~RLl~aLy-----------------------hp~n~y~IHvD~ks-~~~~~~~l~~~v~~ 115 (411)
.+.+|||+.|..|-. .....+.+++. ||+- +++-.|.+. +.++-.++...+..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~-~~i~~~~~~i~id~ir~l~~~~~~ 104 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV-HLVAPDGQSIKKDQIRYLKEEFSK 104 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE-EEeccccccCCHHHHHHHHHHHhh
Confidence 477899999887532 33344445553 5653 334444332 22222223222222
Q ss_pred hccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 015219 116 EKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSA 167 (411)
Q Consensus 116 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 167 (411)
.|... ...|.|+.+.+ .|-....+++-..|+++++.-+||+++.
T Consensus 105 ~~~~~-~~kvviI~~a~-------~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 105 SGVES-NKKVYIIEHAD-------KMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CCccc-CceEEEeehHh-------hhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 23222 23577766532 3344444555566677778888888776
No 48
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=44.54 E-value=11 Score=30.02 Aligned_cols=18 Identities=22% Similarity=0.576 Sum_probs=15.0
Q ss_pred ecCCcccccChhHHHHHH
Q 015219 165 LSASDYPLMSQDDILHIF 182 (411)
Q Consensus 165 LSgsDyPL~t~~~l~~~f 182 (411)
+.|.|||++|+.||...|
T Consensus 11 ~~~a~FPI~s~~eL~~al 28 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPAL 28 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-
T ss_pred HhcCCCCCCCHHHHHHhC
Confidence 457899999999999877
No 49
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=44.12 E-value=2.1e+02 Score=25.71 Aligned_cols=96 Identities=13% Similarity=0.253 Sum_probs=53.9
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYHP---MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyhp---~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
+|.+++ ..+.|.++|+.+..- .+.=+|=||-.+++...+.++++. ...++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~------~~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA------KEYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH------HhCCceEEEecC---CCCChH--HH
Confidence 567777 678888988888632 233356678777665544444332 234566665321 223432 23
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
--.+++.+ . -||++.|.+.|.+ +.+.|...+
T Consensus 70 ~n~g~~~a----~-gd~i~~lD~D~~~--~~~~l~~l~ 100 (224)
T cd06442 70 YIEGFKAA----R-GDVIVVMDADLSH--PPEYIPELL 100 (224)
T ss_pred HHHHHHHc----C-CCEEEEEECCCCC--CHHHHHHHH
Confidence 33444433 2 2899999988775 344444433
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.06 E-value=19 Score=31.19 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 015219 13 TWLPPLISISLLSLLIILT 31 (411)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (411)
||++.+++.++++++|+++
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 6877666555555554443
No 51
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.62 E-value=2.3e+02 Score=25.06 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=51.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYHPM--NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAAT 145 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyhp~--n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 145 (411)
+|.+++ ..+.+.++|+.|.... ..=+|=+|..+++...+.+++.. ...++.++.... .-|....+
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~~--n~g~~~~~--- 68 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLPE--NLGGAGGF--- 68 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-------CCCceEEEECcc--ccchhhHH---
Confidence 567787 6789999999996321 22356678877776555554321 112255553221 22322222
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 146 LHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 146 L~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
=.++..++ ..+.||++.+.+.+.+-
T Consensus 69 n~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 69 YEGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred HHHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 23334443 23679999999888874
No 52
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=42.73 E-value=1.8e+02 Score=23.37 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=50.1
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYHPM--NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAAT 145 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyhp~--n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 145 (411)
+|.+++ ..+.+.++++++..-. +.-++-+|..++++....+....+ ...++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK------KDPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh------cCCCeEEE-----EecCCCChHHHH
Confidence 566666 6899999999986443 444566777776655554443221 11122222 222333444444
Q ss_pred HHHHHHHHhcCCCCcEEEEecCCccccc
Q 015219 146 LHAVAILLKQAKDWDWFINLSASDYPLM 173 (411)
Q Consensus 146 L~~~~~lL~~~~~wdyfi~LSgsDyPL~ 173 (411)
-.++..+ +.||++.+.+.+.+..
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~~ 92 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLLP 92 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccCc
Confidence 4444443 5789999988777543
No 53
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=40.20 E-value=2.3e+02 Score=28.67 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=53.8
Q ss_pred CCCcEEEEEEecCCCH--HHHHHHH-----------------------HHHcCCCCEEEEEEeCCC--ChHHHHHHHHhh
Q 015219 61 ALPRLAYLISGTKGDG--ARVKRVL-----------------------QAVYHPMNYYVLHLDLEA--SDGERLELAKYV 113 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~--~~l~RLl-----------------------~aLyhp~n~y~IHvD~ks--~~~~~~~l~~~v 113 (411)
..+.+|||+.|..|-+ .....+. .+-.||+..++-.-+++. +.++-.++...+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 3578899998877632 2222233 333477755443333222 333333344444
Q ss_pred hhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCc
Q 015219 114 KSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASD 169 (411)
Q Consensus 114 ~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsD 169 (411)
...|.. ....|.++...+ .|-.+.-+++-..|+++.+.-+||+++.+-
T Consensus 99 ~~~~~~-~~~kv~iI~~a~-------~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 99 VQTAQL-GGRKVVLIEPAE-------AMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred hhcccc-CCCeEEEECChh-------hCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 333322 234566666544 344444455555667777788999888653
No 54
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.21 E-value=2.5e+02 Score=24.21 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=50.7
Q ss_pred EEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 67 YLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 67 YlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
.+|.+++ ..+.+.++|..+... .+.=+|=+|..+++.....++++.+ . .+.+... ..+| ...|
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~------~--~~~~~~~----~~~g--~~~a 66 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED------K--ITYWISE----PDKG--IYDA 66 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh------h--cEEEEec----CCcC--HHHH
Confidence 4577787 678899999988532 1223566788777766555543211 1 2333322 2233 3334
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCccccc
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLM 173 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~ 173 (411)
.-.+++ .. +-||++.|.+.|.+..
T Consensus 67 ~n~~~~----~a-~~~~v~~ld~D~~~~~ 90 (202)
T cd06433 67 MNKGIA----LA-TGDIIGFLNSDDTLLP 90 (202)
T ss_pred HHHHHH----Hc-CCCEEEEeCCCcccCc
Confidence 333333 32 3589999999998764
No 55
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.65 E-value=2.3e+02 Score=25.36 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=52.2
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 66 AYLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 66 AYlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
..+|.+|+ ..+.+.++|+.+..- .+.-+|=+|..+.+...+.++ . .+++++... .|.+ .
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~--~ 62 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRA--R 62 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHH--H
Confidence 45777777 677888888887532 234456668877655433222 1 456666432 2322 1
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
| + ..+++.. .-+|++.+.+.++| +.+-+.+.+
T Consensus 63 a-~---n~g~~~a-~~~~i~~~D~D~~~--~~~~l~~l~ 94 (221)
T cd02522 63 Q-M---NAGAAAA-RGDWLLFLHADTRL--PPDWDAAII 94 (221)
T ss_pred H-H---HHHHHhc-cCCEEEEEcCCCCC--ChhHHHHHH
Confidence 1 2 2222322 25899999999988 455555533
No 56
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.73 E-value=21 Score=28.51 Aligned_cols=18 Identities=11% Similarity=0.578 Sum_probs=15.5
Q ss_pred cCCcccccChhHHHHHHc
Q 015219 166 SASDYPLMSQDDILHIFS 183 (411)
Q Consensus 166 SgsDyPL~t~~~l~~~fs 183 (411)
-|.|||++++.+|...|-
T Consensus 17 k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 17 KGADFPINNPEELVAALP 34 (80)
T ss_pred ccCCCCCCCHHHHHHhcc
Confidence 468999999999998763
No 57
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=35.67 E-value=3.1e+02 Score=30.97 Aligned_cols=118 Identities=8% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeee
Q 015219 61 ALPRLAYLISGTKGDGARVKRVLQA----VYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTY 136 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~~~l~RLl~a----Lyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 136 (411)
..++++.+|=+|+ ..+.+.+++.+ |+.|+-.++|-++..-. +-.+++++ +...+|++++|..++
T Consensus 69 ~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~-~T~~~~~~------~~~~~p~~~~v~~~~---- 136 (703)
T PRK15489 69 DEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRRYVIFVGTYPNDA-ETITEVER------MRRRYKRLVRVEVPH---- 136 (703)
T ss_pred CCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCCeEEEEEecCCCc-cHHHHHHH------HhccCCcEEEEEcCC----
Confidence 3469999999998 88888888886 35675443333222211 22222332 123467888765322
Q ss_pred CCc-cHHHHHHHHHHHHHh----cCCCCcEEEEecCCcccccChhHHHHHHccCCCccceEe
Q 015219 137 KGP-TMIAATLHAVAILLK----QAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLE 193 (411)
Q Consensus 137 gg~-S~V~AtL~~~~~lL~----~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~~~~~NFIe 193 (411)
+|+ +--.|-=.+++.+++ .+..++.++...+.|.|=-.+-....++. .+..+|.
T Consensus 137 ~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~---~~~~~iQ 195 (703)
T PRK15489 137 DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLL---PRKDLVQ 195 (703)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhc---CCcceee
Confidence 332 233332233333322 13457779999999997555444433332 2235665
No 58
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=35.31 E-value=7.6e+02 Score=28.58 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=61.0
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH---cCCCC-EEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeee
Q 015219 61 ALPRLAYLISGTKGDGARVKRVLQAV---YHPMN-YYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTY 136 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~~~l~RLl~aL---yhp~n-~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 136 (411)
..|+++.+|-+|+.+.+.+++.+.++ +.|.. .=++=+|..+.++.+ ++++ + .+|+++.+... -
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~-~la~---------~-~~v~yI~R~~n--~ 324 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFR-QFAQ---------E-VGVKYIARPTH--E 324 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHH-HHHH---------H-CCcEEEEeCCC--C
Confidence 45799999999985456667777664 34543 225566766655543 3321 1 25777653321 1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccCh-hHHHHHHccCCCccceEe
Q 015219 137 KGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQ-DDILHIFSYLPKYLNFLE 193 (411)
Q Consensus 137 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~-~~l~~~fs~~~~~~NFIe 193 (411)
+| - ++ ++..+++.. +-||++.+.+.+.|-... +.+..+|.. +.+.-++.
T Consensus 325 ~g--K-AG---nLN~aL~~a-~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 325 HA--K-AG---NINNALKYA-KGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred cc--h-HH---HHHHHHHhC-CCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 11 1 11 222333332 469999999999985443 333344432 23344443
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=34.79 E-value=3.5e+02 Score=26.67 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCcEEEEEEecCCC--HHHHHHHHHHH-------cCCCCEEEEEEeCCC-ChHHHHHHHHhhhhhccccccCceEEeCc
Q 015219 61 ALPRLAYLISGTKGD--GARVKRVLQAV-------YHPMNYYVLHLDLEA-SDGERLELAKYVKSEKVIRDFKNVMVIGK 130 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d--~~~l~RLl~aL-------yhp~n~y~IHvD~ks-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~ 130 (411)
...++|||+.|..|- ......+.++| .||+-..+...|.+. +.++-.++...+...|... -..|.|+..
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~-~~kv~iI~~ 101 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEG-DKKVIIIYN 101 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccC-CceEEEEec
Confidence 357889999988753 23445555555 255543444434443 2222222333333334322 345777665
Q ss_pred ceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 015219 131 ADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSA 167 (411)
Q Consensus 131 ~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 167 (411)
.+ .|-.+.-+++-..|+++++..+||+++.
T Consensus 102 ad-------~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 102 SE-------KMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred hh-------hcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 32 3333344555566677778889999883
No 60
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=32.96 E-value=5.3e+02 Score=26.04 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=62.4
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChHHHHHHHHhhhhhcccccc-CceEEeCcceeeeeC
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVY---HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDF-KNVMVIGKADLVTYK 137 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~-~NV~vv~~~~~V~wg 137 (411)
.|++..+|=+++.+.+-+++++.++. .|+..+++=.| .++++..+.+++... ++ +++.++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d-~~~d~~~~~~~~~~~------~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDD-GSTDETYEILEELGA------EYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECC-CCChhHHHHHHHHHh------hcCcceEEEec-------
Confidence 58999999999866669999998886 45445555555 445555555554332 33 46666510
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccCh-hHHHHHHc
Q 015219 138 GPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQ-DDILHIFS 183 (411)
Q Consensus 138 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~-~~l~~~fs 183 (411)
.....+-..++...++.. +.|+++.+.+...|=+.. .++...|.
T Consensus 119 -~~~~~gK~~al~~~l~~~-~~d~V~~~DaD~~~~~d~l~~~~~~f~ 163 (439)
T COG1215 119 -EKKNGGKAGALNNGLKRA-KGDVVVILDADTVPEPDALRELVSPFE 163 (439)
T ss_pred -cccCccchHHHHHHHhhc-CCCEEEEEcCCCCCChhHHHHHHhhhc
Confidence 112222334444555544 478998888777765432 33444443
No 61
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=32.13 E-value=1.5e+02 Score=30.12 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=45.4
Q ss_pred HHHHHHHcCCCCEEEEEEeCCC-ChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCC
Q 015219 80 KRVLQAVYHPMNYYVLHLDLEA-SDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKD 158 (411)
Q Consensus 80 ~RLl~aLyhp~n~y~IHvD~ks-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~ 158 (411)
.|++.+-.|||-.++-..|.+. +.++-.++.+.+...|... .-.|.|+...+ .|-.+.-+++-..|+++++
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-~~KV~iI~~a~-------~m~~~AaNaLLKtLEEPp~ 136 (325)
T PRK06871 65 CHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQG-GNKVVYIQGAE-------RLTEAAANALLKTLEEPRP 136 (325)
T ss_pred HHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccC-CceEEEEechh-------hhCHHHHHHHHHHhcCCCC
Confidence 4555566688754433323332 3444334444444333222 22455555433 5556666666677778888
Q ss_pred CcEEEEecCC
Q 015219 159 WDWFINLSAS 168 (411)
Q Consensus 159 wdyfi~LSgs 168 (411)
.-+||+++.+
T Consensus 137 ~~~fiL~t~~ 146 (325)
T PRK06871 137 NTYFLLQADL 146 (325)
T ss_pred CeEEEEEECC
Confidence 9999999865
No 62
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=31.96 E-value=3.3e+02 Score=23.40 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=52.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
+|.+++ ..+.++++|..+.. +... +|=+|-.+++...+.+..+.+. ...+.+++.... .|+....+
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~e-iivvdd~s~d~t~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~ 70 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFE-VIIADDGSTEETKELIEEFKSQ----FPIPIKHVWQED-----EGFRKAKI 70 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCE-EEEEeCCCchhHHHHHHHHHhh----cCCceEEEEcCC-----cchhHHHH
Confidence 577776 68999999999953 2233 4456776766554444433221 012334443221 12222222
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHH
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIF 182 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~f 182 (411)
--.+++.+ .-+|++.|.+.|.| +.+-|...+
T Consensus 71 ~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~~~ 101 (182)
T cd06420 71 RNKAIAAA-----KGDYLIFIDGDCIP--HPDFIADHI 101 (182)
T ss_pred HHHHHHHh-----cCCEEEEEcCCccc--CHHHHHHHH
Confidence 22333322 35899999999987 444454444
No 63
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=31.12 E-value=2.6e+02 Score=25.13 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=52.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC------CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCc-eEEeCcceeeeeCCcc
Q 015219 68 LISGTKGDGARVKRVLQAVYH------PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKN-VMVIGKADLVTYKGPT 140 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyh------p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~N-V~vv~~~~~V~wgg~S 140 (411)
+|.+++ ..+.+.++|+.+.. +.+.=+|-+|-.|++...+.++.+.+ .+++ |+++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455665 45556655555531 13444677888888776665655432 2343 35553221 23332
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 141 MIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 141 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
.|...+++.+ . -||++.|.+.+.+ +.+.|...+.
T Consensus 72 --~a~~~g~~~a----~-gd~i~~ld~D~~~--~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAA----R-GDYILFADADLAT--PFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHh----c-CCEEEEEeCCCCC--CHHHHHHHHH
Confidence 3444445443 2 3899999988873 4444544443
No 64
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=30.93 E-value=3.8e+02 Score=23.78 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCcEEEEEEecCCC--HHHHHHHHHHHcCCC-------------------CEEEEEEeCCC-----ChHHHHHHHHhhhh
Q 015219 62 LPRLAYLISGTKGD--GARVKRVLQAVYHPM-------------------NYYVLHLDLEA-----SDGERLELAKYVKS 115 (411)
Q Consensus 62 ~~~iAYlIl~hk~d--~~~l~RLl~aLyhp~-------------------n~y~IHvD~ks-----~~~~~~~l~~~v~~ 115 (411)
...+|||+.|-.|. ......+++.++-.. +.-++.++... ..++-.++...+..
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 46788999887653 345556666665221 11123333332 22332344444333
Q ss_pred hccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 015219 116 EKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSA 167 (411)
Q Consensus 116 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 167 (411)
.+.. ....|.|+...+ .|-....+++...|+++.+.-+||+++.
T Consensus 97 ~~~~-~~~KviiI~~ad-------~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 97 SPSE-GKYKVIIIDEAD-------KLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp S-TT-SSSEEEEEETGG-------GS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred HHhc-CCceEEEeehHh-------hhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 2321 223455554433 5555555666666667767777777774
No 65
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=30.06 E-value=5.7e+02 Score=25.49 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc-----CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceee
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVY-----HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLV 134 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLy-----hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 134 (411)
++.+++..+|-+++ ..+.+.++++++. .+.+.=+|=+|-.|++...+.+++..+. ...+|..+..
T Consensus 3 ~~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~---- 72 (325)
T PRK10714 3 HPIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILL---- 72 (325)
T ss_pred CCCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEe----
Confidence 34567999999998 6777777776653 1223346777877777665555443211 1234544321
Q ss_pred eeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHccC
Q 015219 135 TYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYL 185 (411)
Q Consensus 135 ~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~ 185 (411)
-.++..-.|...+++.+ +-||++.+.+.+- .+.++|.+.+...
T Consensus 73 -~~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 73 -NRNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred -CCCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 12334444444444433 3589999988776 4666666665543
No 66
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=29.72 E-value=3.9e+02 Score=23.45 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=52.9
Q ss_pred EEEecCCCHHHHHHHHHHHcC---C-CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 68 LISGTKGDGARVKRVLQAVYH---P-MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 68 lIl~hk~d~~~l~RLl~aLyh---p-~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
+|-+++ ..+.+.++|+++.. | .+.-+|=+|-.+++...+.+++. ...|.+... ..++| .-.
T Consensus 2 vIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---------~~~~~~~~~---~~~~g--k~~ 66 (183)
T cd06438 2 LIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---------GATVLERHD---PERRG--KGY 66 (183)
T ss_pred EEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---------CCeEEEeCC---CCCCC--HHH
Confidence 567777 67888899988853 3 22334556666766543332211 112333221 12333 334
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHH
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILH 180 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~ 180 (411)
|.-.+++.+.+...+.||++.+.+.+.|- .+.|..
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~~ 101 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALEE 101 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHHH
Confidence 44455555543345689999999988874 444433
No 67
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=29.43 E-value=1.9e+02 Score=28.25 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=55.0
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEE---EEEEe-CCCChHHHHHHHHhhhhhccccccCceEEeCcce--eeeeCCcc
Q 015219 67 YLISGTKGDGARVKRVLQAVYHPMNYY---VLHLD-LEASDGERLELAKYVKSEKVIRDFKNVMVIGKAD--LVTYKGPT 140 (411)
Q Consensus 67 YlIl~hk~d~~~l~RLl~aLyhp~n~y---~IHvD-~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~--~V~wgg~S 140 (411)
.+|+++........++|+.|.+-+|.. ++|-. .+-+.+.+++|.. ..+|.++.-.. .-.+.+..
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 456666656777778888887666633 34442 3345555666543 22333322000 00011110
Q ss_pred HH--HHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHH
Q 015219 141 MI--AATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDIL 179 (411)
Q Consensus 141 ~V--~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~ 179 (411)
.. .-.+..+|.+. ..++-+++|.+..+|+++.+.+-
T Consensus 74 ~~~~~~~~K~lA~l~---ssFeevllLDaD~vpl~~p~~lF 111 (271)
T PF11051_consen 74 FSKKGFQNKWLALLF---SSFEEVLLLDADNVPLVDPEKLF 111 (271)
T ss_pred cccCCchhhhhhhhh---CCcceEEEEcCCcccccCHHHHh
Confidence 11 12234444443 35899999999999999988863
No 68
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=27.76 E-value=3.6e+02 Score=22.70 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=57.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC-CEEEEEEeCCCChH-HHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHH
Q 015219 67 YLISGTKGDGARVKRVLQAVYHPM-NYYVLHLDLEASDG-ERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAA 144 (411)
Q Consensus 67 YlIl~hk~d~~~l~RLl~aLyhp~-n~y~IHvD~ks~~~-~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 144 (411)
++|.+|..=.+-+...++.+.-.+ +.+.+-+....+.+ ..+++.+.++..+ .-..|.|+.+ ...|.+..+..
T Consensus 3 ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~viil~D---l~GGSp~n~~~ 76 (122)
T cd00006 3 IIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELD---SGEGVLILTD---LFGGSPNNAAA 76 (122)
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCcEEEEEe---CCCCCHHHHHH
Confidence 578888633577888888887544 77788887765544 4566666654321 2346776643 44455555433
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCCccccc
Q 015219 145 TLHAVAILLKQAKDWDWFINLSASDYPLM 173 (411)
Q Consensus 145 tL~~~~~lL~~~~~wdyfi~LSgsDyPL~ 173 (411)
.+ +.+ . .-+..++|-+.|+.
T Consensus 77 ~~-----~~~-~---~~~~visG~nlpml 96 (122)
T cd00006 77 RL-----SME-H---PPVEVIAGVNLPML 96 (122)
T ss_pred HH-----Hhc-C---CCEEEEEccCHHHH
Confidence 22 222 1 34678999999984
No 69
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=26.85 E-value=83 Score=30.04 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=17.3
Q ss_pred CCCCCCC-CCCCccchhHHH--HHHHHHHHHHH
Q 015219 1 MKKPHIS-SSLDRTWLPPLI--SISLLSLLIIL 30 (411)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~ 30 (411)
|.+++.. .....+|+.++. +++|+++|++|
T Consensus 1 M~~k~~~~~~~~~~W~vtyaD~~TlLlafFvlL 33 (230)
T PRK06925 1 MERRKRQQSKGSPKWMVTFSDLITLILVFFILL 33 (230)
T ss_pred CCCCccCCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 6665433 445678988763 45555555444
No 70
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=26.46 E-value=5.2e+02 Score=23.92 Aligned_cols=107 Identities=7% Similarity=0.069 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCC-ChHHHHHHHHhhhhhccccccCceEEeCcce--eeeeCCcc-----HHHHHHH
Q 015219 76 GARVKRVLQAVYHPMNYYVLHLDLEA-SDGERLELAKYVKSEKVIRDFKNVMVIGKAD--LVTYKGPT-----MIAATLH 147 (411)
Q Consensus 76 ~~~l~RLl~aLyhp~n~y~IHvD~ks-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~--~V~wgg~S-----~V~AtL~ 147 (411)
...+=.-++|+=|....++|..=+.. ...|...++ ..+||.+..-.. ...+.... .+++-+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 47788889999999999999998875 345544443 346777654222 12222221 2222333
Q ss_pred HHHHHHhcCCCCcEEEE---ecCCcccccChhHHHHHHccCCCccceEe
Q 015219 148 AVAILLKQAKDWDWFIN---LSASDYPLMSQDDILHIFSYLPKYLNFLE 193 (411)
Q Consensus 148 ~~~~lL~~~~~wdyfi~---LSgsDyPL~t~~~l~~~fs~~~~~~NFIe 193 (411)
-++.++. ..+||-+|+ +.+-+|=|.+-+++.+++...|.+.+-|-
T Consensus 106 ~a~~~l~-~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evIL 153 (178)
T PRK07414 106 YTQAVVD-EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVIL 153 (178)
T ss_pred HHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEE
Confidence 3334444 368999986 67788889999999999987777666553
No 71
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.26 E-value=5.5e+02 Score=26.15 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=55.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcce--eeeeC
Q 015219 65 LAYLISGTKGDGARVKRVLQAVYHP-----MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKAD--LVTYK 137 (411)
Q Consensus 65 iAYlIl~hk~d~~~l~RLl~aLyhp-----~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~--~V~wg 137 (411)
++.+|++++ .++.++|+|++|..- ...++|-.|.... +..+.++.+. .+|.++.... ....|
T Consensus 2 ~PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~~---------~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFG---------DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhhc---------cccEEEEcccccccccC
Confidence 457889998 699999999999743 3456777777432 2223332210 1344333211 01111
Q ss_pred ------C-ccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC
Q 015219 138 ------G-PTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS 174 (411)
Q Consensus 138 ------g-~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t 174 (411)
+ ..+...-..++..++... +.+++|.|-+.+.|-..
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~-~~~~vIILEDDl~~sPd 113 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLF-GYSFVIILEDDLDIAPD 113 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhc-CCCEEEEECCCCccCHh
Confidence 2 222332333566666543 68999999998876543
No 72
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=25.73 E-value=3.4e+02 Score=24.96 Aligned_cols=107 Identities=21% Similarity=0.245 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEEeCC-CChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCcc-H--HHHHHHHHHHH
Q 015219 77 ARVKRVLQAVYHPMNYYVLHLDLE-ASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPT-M--IAATLHAVAIL 152 (411)
Q Consensus 77 ~~l~RLl~aLyhp~n~y~IHvD~k-s~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S-~--V~AtL~~~~~l 152 (411)
..+=-.++|+=|....+++..=+. ....|...+ +..+||.+..-.....|..-. . ..+.-++++.+
T Consensus 19 AAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----------~~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~a 88 (172)
T PF02572_consen 19 AALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----------KKLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEEA 88 (172)
T ss_dssp HHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----------GGGT--EEEE--TT----GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----------HhCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHHH
Confidence 667778889989999999999877 334444433 356777776433344554332 2 22333333333
Q ss_pred Hhc--CCCCcEEEE---ecCCcccccChhHHHHHHccCCCccceEe
Q 015219 153 LKQ--AKDWDWFIN---LSASDYPLMSQDDILHIFSYLPKYLNFLE 193 (411)
Q Consensus 153 L~~--~~~wdyfi~---LSgsDyPL~t~~~l~~~fs~~~~~~NFIe 193 (411)
.+. +..||-+|+ +-+-+|=|.+.+++.+++...|...+-|-
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVl 134 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVL 134 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEE
Confidence 221 468999987 66778888999999999987666666553
No 73
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=25.67 E-value=5.1e+02 Score=23.49 Aligned_cols=103 Identities=13% Similarity=0.009 Sum_probs=55.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCChHH-HHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHH
Q 015219 67 YLISGTKGDGARVKRVLQAVYHPM--NYYVLHLDLEASDGE-RLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIA 143 (411)
Q Consensus 67 YlIl~hk~d~~~l~RLl~aLyhp~--n~y~IHvD~ks~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 143 (411)
.+|-+|+.+++.|.++|+.|..-. +.=+|=+|..+++.. .+.+++..+. ...++.++.... ..|+ ...
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~--~~~ 72 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGA--KAG 72 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCC--chH
Confidence 367788744578999988885321 233566676665543 2344433221 123566653221 2233 122
Q ss_pred HHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 144 ATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 144 AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
|.-.+++.+ ..+.||++.+.+.+. .+.+.|.+...
T Consensus 73 a~n~g~~~a---~~~~d~i~~lD~D~~--~~~~~l~~l~~ 107 (236)
T cd06435 73 ALNYALERT---APDAEIIAVIDADYQ--VEPDWLKRLVP 107 (236)
T ss_pred HHHHHHHhc---CCCCCEEEEEcCCCC--cCHHHHHHHHH
Confidence 222333332 134799999988875 46677766554
No 74
>PRK08309 short chain dehydrogenase; Provisional
Probab=25.48 E-value=5.1e+02 Score=23.49 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHh
Q 015219 75 DGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLK 154 (411)
Q Consensus 75 d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 154 (411)
+.+....+...+..+.+..++.+|-....+....+...+ ..++.+.+ .|.|-....-++...+++.+=-
T Consensus 32 ~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l------~~~g~id~-----lv~~vh~~~~~~~~~~~~~~gv 100 (177)
T PRK08309 32 REVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTI------EKNGPFDL-----AVAWIHSSAKDALSVVCRELDG 100 (177)
T ss_pred CHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHH------HHcCCCeE-----EEEeccccchhhHHHHHHHHcc
Confidence 567777776666445566777788876555544444332 22344432 2455555555555555555543
Q ss_pred cCCCCcEEEEecCC
Q 015219 155 QAKDWDWFINLSAS 168 (411)
Q Consensus 155 ~~~~wdyfi~LSgs 168 (411)
.++.|.++|.|...
T Consensus 101 ~~~~~~~~h~~gs~ 114 (177)
T PRK08309 101 SSETYRLFHVLGSA 114 (177)
T ss_pred CCCCceEEEEeCCc
Confidence 45789999998433
No 75
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=24.91 E-value=5.4e+02 Score=24.31 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=57.5
Q ss_pred EEEEEEecCCC-HHHHHHHHHHHc--CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccH
Q 015219 65 LAYLISGTKGD-GARVKRVLQAVY--HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTM 141 (411)
Q Consensus 65 iAYlIl~hk~d-~~~l~RLl~aLy--hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 141 (411)
.||+-++...+ ...+.-++..|- +++..++|+++...+.+.++.|++... ..-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~------~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGW------IVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCC------EEEecCccCCcchhhhccchH
Confidence 37777766422 345555555553 455567778888778888887765310 011111121111110001112
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHH
Q 015219 142 IAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILH 180 (411)
Q Consensus 142 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~ 180 (411)
..++..=+. +.+. .++|.++.|.+.-+.+.+.++|.+
T Consensus 75 ~~~~~~kl~-~~~l-~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 75 FKDTYTKLR-LWNL-TEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHHhHHHH-hccc-cccceEEEEeCCeeEccCHHHHhC
Confidence 222221111 1122 479999999999999999888754
No 76
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=24.53 E-value=5.9e+02 Score=23.84 Aligned_cols=106 Identities=19% Similarity=0.131 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCCCCEEEEEEeCCC-ChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCC------ccHHHHHHHHH
Q 015219 77 ARVKRVLQAVYHPMNYYVLHLDLEA-SDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKG------PTMIAATLHAV 149 (411)
Q Consensus 77 ~~l~RLl~aLyhp~n~y~IHvD~ks-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg------~S~V~AtL~~~ 149 (411)
..+-.-++|+-+.....+|..=+.. ...|...++ ..+||.+..-.....|.. .......++-+
T Consensus 38 ~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a 107 (191)
T PRK05986 38 AAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEA 107 (191)
T ss_pred HHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHH
Confidence 6677778888899999999998866 445555443 246777764333333432 12233334444
Q ss_pred HHHHhcCCCCcEEEE---ecCCcccccChhHHHHHHccCCCccceEe
Q 015219 150 AILLKQAKDWDWFIN---LSASDYPLMSQDDILHIFSYLPKYLNFLE 193 (411)
Q Consensus 150 ~~lL~~~~~wdyfi~---LSgsDyPL~t~~~l~~~fs~~~~~~NFIe 193 (411)
+.++. +.+||-+|+ +-+-+|=|.+.+++.+++...|.+.+-|-
T Consensus 108 ~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVl 153 (191)
T PRK05986 108 KRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVI 153 (191)
T ss_pred HHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEE
Confidence 45554 468999986 67788889999999999987776666553
No 77
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=23.77 E-value=4.9e+02 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=22.0
Q ss_pred ceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCC
Q 015219 124 NVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSAS 168 (411)
Q Consensus 124 NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgs 168 (411)
.|.||...+ .|-.+.-+++-..|+++.+.-+||+++.+
T Consensus 115 kV~iI~~ae-------~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 115 QVVIVDPAD-------AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EEEEeccHh-------hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 455555443 34444445544556667777788888754
No 78
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=23.70 E-value=4.8e+02 Score=23.12 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhc
Q 015219 76 GARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQ 155 (411)
Q Consensus 76 ~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~ 155 (411)
-..+++.++++...-..++|-.-.. .. + ...++.++.+. ..|.+...+...+++.++..
T Consensus 15 ~~ll~~~~~~l~~~~~~iivv~~~~---~~---~-----------~~~~~~~i~d~----~~g~gpl~~~~~gl~~~~~~ 73 (178)
T PRK00576 15 TTLVEHVVGIVGQRCAPVFVMAAPG---QP---L-----------PELPAPVLRDE----LRGLGPLPATGRGLRAAAEA 73 (178)
T ss_pred cCHHHHHHHHHhhcCCEEEEECCCC---cc---c-----------ccCCCCEeccC----CCCCCcHHHHHHHHHHHHhc
Confidence 3577888888764444454444221 11 0 01245666532 23455555555566655442
Q ss_pred CCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 156 AKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 156 ~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
+.+| +++...|.|+.+.+.+...+.
T Consensus 74 --~~~~-~lv~~~DmP~i~~~~i~~L~~ 98 (178)
T PRK00576 74 --GARL-AFVCAVDMPYLTVELIDDLAR 98 (178)
T ss_pred --CCCE-EEEEeCCCCCCCHHHHHHHHH
Confidence 3566 667779999999998876554
No 79
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=23.27 E-value=5.1e+02 Score=22.68 Aligned_cols=89 Identities=13% Similarity=0.248 Sum_probs=47.3
Q ss_pred EEEEecCCC-HHHHHHHHHHHcC---CCCEEEEEEeCCC-ChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccH
Q 015219 67 YLISGTKGD-GARVKRVLQAVYH---PMNYYVLHLDLEA-SDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTM 141 (411)
Q Consensus 67 YlIl~hk~d-~~~l~RLl~aLyh---p~n~y~IHvD~ks-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 141 (411)
.+|-++..+ ++.+.++|+.+.. +...+ |=||-.+ ++...+.+..+.+ .++ +.++..... .| .
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~ei-iivdd~ss~d~t~~~~~~~~~------~~~-i~~i~~~~n---~G--~ 68 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEV-VLVKDGPVTQSLNEVLEEFKR------KLP-LKVVPLEKN---RG--L 68 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEE-EEEECCCCchhHHHHHHHHHh------cCC-eEEEEcCcc---cc--H
Confidence 356666533 4689999999963 33344 4455444 4444333433321 233 666542211 12 2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCccccc
Q 015219 142 IAATLHAVAILLKQAKDWDWFINLSASDYPLM 173 (411)
Q Consensus 142 V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~ 173 (411)
..|.-.|++ .. +-||++.|.+.|++..
T Consensus 69 ~~a~N~g~~----~a-~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 69 GKALNEGLK----HC-TYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHHHHHH----hc-CCCEEEEeCCccccCc
Confidence 223323332 22 4689999999998753
No 80
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.37 E-value=7.4e+02 Score=27.29 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=56.6
Q ss_pred CCcEEEEEEecCCCH--HHHHHHHHHHcC----------------------CCCEEEEEEeCCCC--hHHHHHHHHhhhh
Q 015219 62 LPRLAYLISGTKGDG--ARVKRVLQAVYH----------------------PMNYYVLHLDLEAS--DGERLELAKYVKS 115 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~--~~l~RLl~aLyh----------------------p~n~y~IHvD~ks~--~~~~~~l~~~v~~ 115 (411)
.+.+|||+.|..|-. -..+.+.++|+- +.+.-++-+|+.+. .++-.++...+..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~ 112 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY 112 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh
Confidence 578999999887632 334445555551 12334567788653 4444455555554
Q ss_pred hccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 015219 116 EKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSA 167 (411)
Q Consensus 116 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 167 (411)
.|... .-.|.|+.+.+..+ ....+++...|++..+.-.||+++.
T Consensus 113 ~P~~~-~~KVvIIDEah~Lt-------~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 113 APAQS-RYRIFIVDEAHMVT-------TAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred hhhcC-CceEEEEECCCcCC-------HHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 45443 33588887655443 2233444445566677888888883
No 81
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.62 E-value=4.6e+02 Score=26.12 Aligned_cols=92 Identities=22% Similarity=0.323 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHc-CCCCEEEE-EEeC---CC--ChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCcc-HHHHHH
Q 015219 75 DGARVKRVLQAVY-HPMNYYVL-HLDL---EA--SDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPT-MIAATL 146 (411)
Q Consensus 75 d~~~l~RLl~aLy-hp~n~y~I-HvD~---ks--~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S-~V~AtL 146 (411)
+++||..++..+. .|+..++| |.-. +. ....++.|... ...+||.+== ...+.+++.+ -++...
T Consensus 145 ~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~l-------a~~pNv~~Kl-SG~~~~~~~~w~~~~v~ 216 (279)
T COG3618 145 DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARL-------ARRPNVWAKL-SGVYAYSDESWTVEDVR 216 (279)
T ss_pred ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHH-------HhCCCeEEEE-eeecccccCCCCHHHHH
Confidence 4566766666553 67655544 4322 11 23345666543 3568888621 2334555555 444445
Q ss_pred HHHHHHHhcCCCCcEEEEecCCcccccChhH
Q 015219 147 HAVAILLKQAKDWDWFINLSASDYPLMSQDD 177 (411)
Q Consensus 147 ~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~ 177 (411)
--++.+++. -+||.+|. |||||..+...
T Consensus 217 p~~e~~i~~-fg~dR~vf--GSdwPv~~l~~ 244 (279)
T COG3618 217 PYVEELIEL-FGWDRFVF--GSDWPVTSLES 244 (279)
T ss_pred HHHHHHHHh-cCccceEe--cCCCCcccccC
Confidence 555566654 46888876 89999977644
No 82
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=20.53 E-value=5.4e+02 Score=21.95 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=46.6
Q ss_pred CCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecC
Q 015219 88 HPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSA 167 (411)
Q Consensus 88 hp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg 167 (411)
...-..+|-+|.........++. ....+.+..+ +|-++=+-.-++++.+ . ..++ -+.|-|
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~Q------~g~dLG~Rm~~a~~~~-~--~g~~-~vvliG 67 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDHAAFRQLW----------LPSGFSFFPQ------QGGDLGERMANAFQQA-A--RGYE-PVVLIG 67 (122)
T ss_dssp TSSSEEEEEE----TTHHHHHHH----------H-TTSEEEE--------SSSHHHHHHHHHHHH-H--TT-S-EEEEE-
T ss_pred CCCcCEEEEEcCCccHHHHhccc----------cCCCCEEeec------CCCCHHHHHHHHHHHH-H--cCCC-cEEEEc
Confidence 34566778887766554433321 1345555543 5557777777888877 3 3466 788899
Q ss_pred CcccccChhHHHHHHccCCC
Q 015219 168 SDYPLMSQDDILHIFSYLPK 187 (411)
Q Consensus 168 sDyPL~t~~~l~~~fs~~~~ 187 (411)
+|.|-.+.++|.+.|..+.+
T Consensus 68 sD~P~l~~~~l~~A~~~L~~ 87 (122)
T PF09837_consen 68 SDCPDLTPDDLEQAFEALQR 87 (122)
T ss_dssp SS-TT--HHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHhcc
Confidence 99999999999999987643
No 83
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=3.8e+02 Score=22.55 Aligned_cols=61 Identities=28% Similarity=0.294 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHH
Q 015219 76 GARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAAT 145 (411)
Q Consensus 76 ~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 145 (411)
-..+++|+.. ..-+..++=+|....-. +|++++..-.=.+.+|||+|-++ .+||.+.+.+.
T Consensus 27 c~~~k~ll~~--~~v~~~vvELD~~~~g~---eiq~~l~~~tg~~tvP~vFI~Gk----~iGG~~dl~~l 87 (104)
T KOG1752|consen 27 CHRAKELLSD--LGVNPKVVELDEDEDGS---EIQKALKKLTGQRTVPNVFIGGK----FIGGASDLMAL 87 (104)
T ss_pred HHHHHHHHHh--CCCCCEEEEccCCCCcH---HHHHHHHHhcCCCCCCEEEECCE----EEcCHHHHHHH
Confidence 4667888887 35677889999985443 34444432111246899998775 45998888653
Done!