Query 015219
Match_columns 411
No_of_seqs 233 out of 874
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 4.3E-64 1.5E-68 511.6 24.3 279 60-356 81-388 (391)
2 3bcv_A Putative glycosyltransf 84.1 6.8 0.00023 34.6 10.4 93 62-172 4-98 (240)
3 1qg8_A Protein (spore coat pol 78.0 13 0.00045 33.1 10.1 108 63-183 1-114 (255)
4 4fix_A UDP-galactofuranosyl tr 77.2 14 0.00049 39.2 11.5 112 59-183 176-294 (657)
5 4hg6_A Cellulose synthase subu 72.1 52 0.0018 35.6 14.5 103 60-180 137-258 (802)
6 2z86_A Chondroitin synthase; G 71.3 34 0.0012 35.3 12.5 105 62-183 92-200 (625)
7 2d7i_A Polypeptide N-acetylgal 71.1 20 0.00067 37.2 10.5 109 60-184 109-223 (570)
8 1xhb_A Polypeptide N-acetylgal 66.6 32 0.0011 34.1 10.7 107 60-183 26-140 (472)
9 2z86_A Chondroitin synthase; G 63.9 45 0.0016 34.3 11.6 94 61-172 373-468 (625)
10 2ffu_A Ppgalnact-2, polypeptid 51.6 68 0.0023 32.2 10.1 104 60-183 63-172 (501)
11 1ezi_A CMP-N-acetylneuraminic 36.0 68 0.0023 28.2 6.5 90 77-184 30-121 (228)
12 1qwj_A Cytidine monophospho-N- 34.9 1.9E+02 0.0064 25.4 9.3 88 77-183 29-118 (229)
13 3ckj_A Putative uncharacterize 30.7 2.3E+02 0.0078 26.5 9.6 108 61-183 46-158 (329)
14 2fy7_A Beta-1,4-galactosyltran 29.5 2.9E+02 0.0099 25.7 10.0 25 62-87 64-88 (287)
15 1iio_A Conserved hypothetical 23.2 24 0.0008 27.7 0.8 17 166-182 21-37 (84)
16 2vsh_A TARI, 2-C-methyl-D-eryt 22.9 1.2E+02 0.0043 26.3 5.8 94 77-183 32-129 (236)
17 3bed_A PTS system, IIA compone 22.0 3E+02 0.01 22.6 7.7 94 63-173 4-100 (142)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=4.3e-64 Score=511.60 Aligned_cols=279 Identities=23% Similarity=0.336 Sum_probs=239.2
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCc
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVYHPMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGP 139 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLyhp~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 139 (411)
+.+|+|||+|++|+ |+++++||++++|||+|.||||+|+|++..+++.++. +..+++||+|++++..|.|||+
T Consensus 81 e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~------~~~~f~NV~v~~~~~~v~WGg~ 153 (391)
T 2gak_A 81 EVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQG------IASCFDNVFVASQLESVVYASW 153 (391)
T ss_dssp HHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHH------HHHTCTTEEECSSCCCCCTTSH
T ss_pred ccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHH------HHhcCCCEEEeccCcccccCCc
Confidence 34699999999997 9999999999999999999999999999887777653 2457999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHHHHccCCCccceEeeecCCCCccccccc--ccccCCCCcc
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILHIFSYLPKYLNFLEHTSSIGWKEYQRAR--PIIIDPGLYH 217 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~~~~~~NFIe~~~~~~wk~~~R~~--~~i~dpgly~ 217 (411)
|||+|+|+||+.||+.+.+|+|||||||+||||+|+++|.++|+.+ +|+|||++.++.+|++. |++ +.+.+++++
T Consensus 154 S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~- 230 (391)
T 2gak_A 154 TRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT- 230 (391)
T ss_dssp HHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE-
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee-
Confidence 9999999999999998779999999999999999999999999864 68999999988888653 332 223344322
Q ss_pred CCCCcceeccccCCCCCcceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCCchhhhhhhcC---------
Q 015219 218 PKKSGVFWAKEKRSMPASFKLFMGSAWVVLTRSFLEFCIWGWDNLPRTLLMYYTNFLSSPEGYFHSVICNH--------- 288 (411)
Q Consensus 218 ~~~~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~p~~ll~yf~~~~~pdE~yFqTvl~Ns--------- 288 (411)
++..++|.+|.++++|+|||||+|||+||+||++ |++++.+++||+++++|||+||||++.|.
T Consensus 231 ------~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~ 302 (391)
T 2gak_A 231 ------NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSS 302 (391)
T ss_dssp ------EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSS
T ss_pred ------eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccccc
Confidence 3345678889999999999999999999999998 66788899999999999999999998764
Q ss_pred cccccccccCceeEEecCCCCC------CCCc----------ccCHHHHHHHHcCCCcEEeccCC--ChHHHHHHHHHHh
Q 015219 289 KDYQNTTVNHDLHYIRWDSPPK------QHPM----------TLTLKHFDDMVRSGAPFARKFAK--DDPVLNKIDENLL 350 (411)
Q Consensus 289 ~~f~~t~vn~nLRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~alFARKF~~--d~~vLd~Id~~ll 350 (411)
..|.++++|+++|||+|+++.+ .||. +|+.+|++.|.+|+++|||||++ |++||+|||+.|.
T Consensus 303 ~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l~ 382 (391)
T 2gak_A 303 NKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLR 382 (391)
T ss_dssp GGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHHH
T ss_pred cccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHHh
Confidence 2455667899999999984221 2443 89999999999999999999997 7899999999999
Q ss_pred ccCCCC
Q 015219 351 KRSNNR 356 (411)
Q Consensus 351 ~r~~~~ 356 (411)
+|+..+
T Consensus 383 ~r~~~~ 388 (391)
T 2gak_A 383 RKALEN 388 (391)
T ss_dssp HHHHC-
T ss_pred hhhhcc
Confidence 887543
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=84.13 E-value=6.8 Score=34.62 Aligned_cols=93 Identities=17% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCc
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGP 139 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 139 (411)
.|++..+|.+++ ..+.|.++|+.|... .+.=+|=||-.+++...+.++++. ...++|.++...+ .|
T Consensus 4 ~p~vsViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~------~~~~~i~~i~~~n----~G- 71 (240)
T 3bcv_A 4 IPKVSVIVPIYN-VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYA------AQYPNIKVIHKKN----AG- 71 (240)
T ss_dssp CCSEEEEEEESS-CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHH------HHCSSEEEEECCC----CC-
T ss_pred CCcEEEEEecCC-CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHH------hhCCCEEEEECCC----CC-
Confidence 478999999998 578999999998532 233456678777776655555443 2467898885322 33
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
...|--.+++. . .-+|++.|.+.|++-
T Consensus 72 -~~~a~N~g~~~----a-~g~~i~~lD~Dd~~~ 98 (240)
T 3bcv_A 72 -LGMACNSGLDV----A-TGEYVAFCDSDDYVD 98 (240)
T ss_dssp -HHHHHHHHHHH----C-CSSEEEECCTTCCCC
T ss_pred -hHHHHHHHHHH----c-CCCEEEEECCCCcCC
Confidence 33333333333 2 349999999999863
No 3
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=77.98 E-value=13 Score=33.10 Aligned_cols=108 Identities=6% Similarity=0.122 Sum_probs=65.4
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceee---eeC
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLV---TYK 137 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V---~wg 137 (411)
|++..+|.+++ ..+.|.++|+.|... .+.=+|=+|-.+++...+.++++. ..++|.++.....- .+.
T Consensus 1 p~vSViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~-------~~~~i~~i~~~~~~~~~~~~ 72 (255)
T 1qg8_A 1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERTE 72 (255)
T ss_dssp CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHHS
T ss_pred CeEEEEEEcCC-CHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHh-------hcCCEEEEeccccccccccc
Confidence 67899999998 578999999998531 133467788777776555444321 25788887543100 001
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHHc
Q 015219 138 GPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIFS 183 (411)
Q Consensus 138 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~fs 183 (411)
..+...|--.+++.+ .-+|++.|.+.|++... .+.+...|.
T Consensus 73 n~G~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~~~~l~~~~~~~~ 114 (255)
T 1qg8_A 73 KTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELD 114 (255)
T ss_dssp SCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHc-----CCCEEEEeCCCCccChHHHHHHHHHHH
Confidence 233444444444432 45999999999997432 334445554
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=77.17 E-value=14 Score=39.22 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=71.0
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEeCCCChH-HHHHHHHhhhhhccccccCceEEeCcce
Q 015219 59 QPALPRLAYLISGTKGDGARVKRVLQAVYHP-----MNYYVLHLDLEASDG-ERLELAKYVKSEKVIRDFKNVMVIGKAD 132 (411)
Q Consensus 59 ~~~~~~iAYlIl~hk~d~~~l~RLl~aLyhp-----~n~y~IHvD~ks~~~-~~~~l~~~v~~~~~~~~~~NV~vv~~~~ 132 (411)
.+.+|+++.+|.+++ ..+.+.++|..|... .+.=+|-||..|++. ....+.+.++ ...++|.++...+
T Consensus 176 ~~~~pkVSVVIptYN-~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~-----~~~~~I~vI~~~N 249 (657)
T 4fix_A 176 APGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA-----RLGSRLSIHDQPN 249 (657)
T ss_dssp CCSCCCEEEECCBSS-CHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH-----HHGGGEEEEECCC
T ss_pred CCCCCeEEEEEEecC-CHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH-----hcCCCEEEEECCC
Confidence 345689999999998 689999999999642 233478899887642 1112222221 1246899886432
Q ss_pred eeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCccccc-ChhHHHHHHc
Q 015219 133 LVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLM-SQDDILHIFS 183 (411)
Q Consensus 133 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~-t~~~l~~~fs 183 (411)
.| .-.|--.+++.+.... +.||+++|.+.+.+-. ..+.+++++.
T Consensus 250 ----~G--~a~a~N~Gl~~A~g~~-~~dyIlfLD~D~~~~pd~L~~ll~~l~ 294 (657)
T 4fix_A 250 ----LG--GSGGYSRVMYEALKNT-DCQQILFMDDDIRLEPDSILRVLAMHR 294 (657)
T ss_dssp ----CH--HHHHHHHHHHHHHHHC-CCSEEEEECSSEEECTHHHHHHHHHHH
T ss_pred ----CC--HHHHHHHHHHHHHhcC-CCCEEEEECCCCccChhHHHHHHHHHH
Confidence 12 2334556777776643 6899999998887652 2334445454
No 5
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=72.07 E-value=52 Score=35.63 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc---CCCC-EEEEEEeCCCChHH---------------HHHHHHhhhhhcccc
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVY---HPMN-YYVLHLDLEASDGE---------------RLELAKYVKSEKVIR 120 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLy---hp~n-~y~IHvD~ks~~~~---------------~~~l~~~v~~~~~~~ 120 (411)
+..|++..+|-+++.+.+.++++|+.+. .|+. .-+|=+|..+++.. +..++++.+
T Consensus 137 ~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~------ 210 (802)
T 4hg6_A 137 EELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCR------ 210 (802)
T ss_dssp TTCCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHH------
T ss_pred cCCCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHH------
Confidence 3457999999999855555688888883 3432 34566676665443 222322211
Q ss_pred ccCceEEeCcceeeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccChhHHHH
Q 015219 121 DFKNVMVIGKADLVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMSQDDILH 180 (411)
Q Consensus 121 ~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t~~~l~~ 180 (411)
..++.++.... .++| ... ++..+++.. +-||++.+.+.|.+ +.+.+.+
T Consensus 211 -~~~v~~i~~~~--~~~G--Ka~----alN~gl~~a-~gd~Il~lDaD~~~--~pd~L~~ 258 (802)
T 4hg6_A 211 -ELGVVYSTRER--NEHA--KAG----NMSAALERL-KGELVVVFDADHVP--SRDFLAR 258 (802)
T ss_dssp -HHTCEEEECSS--CCSH--HHH----HHHHHHHHC-CCSEEEECCTTEEE--CTTHHHH
T ss_pred -hcCcEEEEecC--CCCc--chH----HHHHHHHhc-CCCEEEEECCCCCc--ChHHHHH
Confidence 23566554322 2222 222 233444443 57999999999987 3444433
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=71.29 E-value=34 Score=35.27 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=65.0
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC---CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCC
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVYHP---MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKG 138 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLyhp---~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 138 (411)
.|++..+|.+++ ..+.+.++|..|..- .+.=+|=||..+++...+.++++ ....+|.++... -.|
T Consensus 92 ~p~vsviIp~~n-~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~-------~~~~~i~~i~~~----~~~ 159 (625)
T 2z86_A 92 IDGLSIVIPTYN-RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREF-------ESLLNIKYVRQK----DYG 159 (625)
T ss_dssp CCCEEEEEEESS-CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTT-------TTTSCEEEEEEC----CCS
T ss_pred CCcEEEEEecCC-cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHh-------hhcCCeEEEEeC----CCC
Confidence 378999999998 689999999999532 23335666666666554444432 223567777532 224
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccccC-hhHHHHHHc
Q 015219 139 PTMIAATLHAVAILLKQAKDWDWFINLSASDYPLMS-QDDILHIFS 183 (411)
Q Consensus 139 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~t-~~~l~~~fs 183 (411)
.+...|.-.+++.+ .-||++.|.+.+.+-.. .+.+...|.
T Consensus 160 ~g~~~a~N~g~~~a-----~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 160 YQLCAVRNLGLRAA-----KYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp CCHHHHHHHHHHHC-----CSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred cchhHHHHHHHHhC-----CcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 34555544444433 46899999999998322 234444444
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=71.09 E-value=20 Score=37.18 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHc--CCCC--EEEEEEeCCCChHH-HHHHHHhhhhhccccccCceEEeCcceee
Q 015219 60 PALPRLAYLISGTKGDGARVKRVLQAVY--HPMN--YYVLHLDLEASDGE-RLELAKYVKSEKVIRDFKNVMVIGKADLV 134 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~~l~RLl~aLy--hp~n--~y~IHvD~ks~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 134 (411)
+..|++..+|.+|+...+.|.+.|..+. .+.+ .=+|=||-.|++.. .+.++++++ .+++|+++....
T Consensus 109 ~~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~------~~~~v~vi~~~~-- 180 (570)
T 2d7i_A 109 ETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA------LFPSVRILRTKK-- 180 (570)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHT------TSTTEEEEECSS--
T ss_pred CCCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHH------hCCeEEEEECCC--
Confidence 3468999999999843488999988884 2323 13577787777666 666665432 457899885322
Q ss_pred eeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCccccc-ChhHHHHHHcc
Q 015219 135 TYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLM-SQDDILHIFSY 184 (411)
Q Consensus 135 ~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~-t~~~l~~~fs~ 184 (411)
......|-..+++.+ .-||++.|.+.|.+-. -.+.+++.+..
T Consensus 181 ---n~G~~~A~N~G~~~A-----~gd~i~fLD~D~~~~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 181 ---REGLIRTRMLGASVA-----TGDVITFLDSHCEANVNWLPPLLDRIAR 223 (570)
T ss_dssp ---CCCHHHHHHHHHHHC-----CSSEEEECCSSEEECTTCSHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhc-----CCCEEEEEcCCccccccHHHHHHHHHHh
Confidence 234566666666543 2489999999988732 23445555543
No 8
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=66.62 E-value=32 Score=34.12 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=67.7
Q ss_pred CCCCcEEEEEEecCCCH-HHHHHHHHHHcC--CCC--EEEEEEeCCCChH-HHHHHHHhhhhhccccccC-ceEEeCcce
Q 015219 60 PALPRLAYLISGTKGDG-ARVKRVLQAVYH--PMN--YYVLHLDLEASDG-ERLELAKYVKSEKVIRDFK-NVMVIGKAD 132 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~-~~l~RLl~aLyh--p~n--~y~IHvD~ks~~~-~~~~l~~~v~~~~~~~~~~-NV~vv~~~~ 132 (411)
+..|++..+|.+|+ .. +.|.++|..|.. +.+ .=+|=||-.|++. ..+.++++++ .++ +|.++....
T Consensus 26 ~~~p~vSVIIp~yN-~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~------~~~~~v~vi~~~~ 98 (472)
T 1xhb_A 26 DNLPTTSVVIVFHN-EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK------KLKVPVHVIRMEQ 98 (472)
T ss_dssp SCCCCEEEEEEESS-CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH------SSSSCEEEEECSS
T ss_pred cCCCCeEEEEEeCC-CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH------HCCCcEEEEECCC
Confidence 34689999999998 55 899999998852 223 2367788777763 5555555432 456 788885332
Q ss_pred eeeeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCccccc-ChhHHHHHHc
Q 015219 133 LVTYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLM-SQDDILHIFS 183 (411)
Q Consensus 133 ~V~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~-t~~~l~~~fs 183 (411)
. .....|-..+++.+ .-||++.|.+.|.+-. -.+.+++.+.
T Consensus 99 n-----~G~~~a~N~g~~~A-----~gd~i~flD~D~~~~p~~L~~ll~~~~ 140 (472)
T 1xhb_A 99 R-----SGLIRARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIK 140 (472)
T ss_dssp C-----CCHHHHHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred C-----CChHHHHHHHHHhc-----cCCeEEEECCCeEeCccHHHHHHHHHH
Confidence 1 23455555555443 3589999999988542 2344555554
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=63.93 E-value=45 Score=34.34 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCC
Q 015219 61 ALPRLAYLISGTKGDGARVKRVLQAVYHP--MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKG 138 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~~~l~RLl~aLyhp--~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 138 (411)
..|+++.+|.+++ ..+.+.+.|+.+... .+.=+|-+|..|++...+.++++. ...++|.++... -.|
T Consensus 373 ~~~~vsiii~~yn-~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~------~~~~~i~~~~~~----n~G 441 (625)
T 2z86_A 373 RVPLVSIYIPAYN-CSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHY------ANHPRVRFISQK----NKG 441 (625)
T ss_dssp SSCSEEEEEEESS-CTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHH------TTCTTEEEEEEC----CCC
T ss_pred cCCeEEEEEeCCC-CHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHH------hhCCcEEEEeCC----CCC
Confidence 3578999999998 578999999988521 233355667666665555554432 245788888532 233
Q ss_pred ccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc
Q 015219 139 PTMIAATLHAVAILLKQAKDWDWFINLSASDYPL 172 (411)
Q Consensus 139 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL 172 (411)
...|.-.+++.+ .-||++.|.+.|++.
T Consensus 442 --~~~a~n~g~~~a-----~g~~i~~ld~D~~~~ 468 (625)
T 2z86_A 442 --IGSASNTAVRLC-----RGFYIGQLDSDDFLE 468 (625)
T ss_dssp --HHHHHHHHHHHC-----CSSEEEECCTTCEEC
T ss_pred --HHHHHHHHHHhc-----CCCEEEEECCCcccC
Confidence 333433344332 348999999999863
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=51.63 E-value=68 Score=32.15 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCCCcEEEEEEecCCCHH-HHHHHHHHHc--CCCC--EEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceee
Q 015219 60 PALPRLAYLISGTKGDGA-RVKRVLQAVY--HPMN--YYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLV 134 (411)
Q Consensus 60 ~~~~~iAYlIl~hk~d~~-~l~RLl~aLy--hp~n--~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 134 (411)
+..|++..+|.+|+ ..+ .|.+.|..+. .+.+ .=+|=||-.|++....++ ...+++|+++....
T Consensus 63 ~~~p~vSVIIp~yN-~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------~~~~~~v~vi~~~~-- 130 (501)
T 2ffu_A 63 VDLPATSVVITFHN-EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------LGKIEKVRVLRNDR-- 130 (501)
T ss_dssp SSCCCEEEEEEESS-CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG---------GGGBTTEEEEECSS--
T ss_pred cCCCCEEEEEEeCc-CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH---------HhcCCCEEEEECCC--
Confidence 34678999999998 455 8888888874 2223 236777877766542221 23567899885321
Q ss_pred eeCCccHHHHHHHHHHHHHhcCCCCcEEEEecCCccccc-ChhHHHHHHc
Q 015219 135 TYKGPTMIAATLHAVAILLKQAKDWDWFINLSASDYPLM-SQDDILHIFS 183 (411)
Q Consensus 135 ~wgg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~-t~~~l~~~fs 183 (411)
......|-..+++.+ .-||++.|.+.|.+-. -.+.+++.+.
T Consensus 131 ---n~G~~~A~N~G~~~A-----~gd~i~flD~D~~~~p~~L~~ll~~~~ 172 (501)
T 2ffu_A 131 ---REGLMRSRVRGADAA-----QAKVLTFLDSHCECNEHWLEPLLERVA 172 (501)
T ss_dssp ---CCHHHHHHHHHHHHC-----CSSEEEECCSSEEECTTCHHHHHHHHH
T ss_pred ---CcCHHHHHHHHHHhc-----CCCEEEEECCCcccCccHHHHHHHHHH
Confidence 224555655555543 3589999999887632 1234444443
No 11
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=35.99 E-value=68 Score=28.20 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=50.5
Q ss_pred HHHHHHHHHHc-CC-CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHh
Q 015219 77 ARVKRVLQAVY-HP-MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLK 154 (411)
Q Consensus 77 ~~l~RLl~aLy-hp-~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 154 (411)
..+.+.++++. ++ -..++|-.+. + + ++.+++ .+ ++.++........++.+...+..++++.+ .
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~---~-~---i~~~~~------~~-~~~~~~~~~~~~~~~~g~~~sv~~~l~~~-~ 94 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDG---G-L---IAEEAK------NF-GVEVVLRPAELASDTASSISGVIHALETI-G 94 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESC---H-H---HHHHHH------HT-TCEEEECCC------CHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCC---H-H---HHHHHH------Hc-CCEEEeCchHHcCCCCChHHHHHHHHHHh-C
Confidence 57777777775 23 2566666652 1 1 222221 12 24444333334456777888877777766 2
Q ss_pred cCCCCcEEEEecCCcccccChhHHHHHHcc
Q 015219 155 QAKDWDWFINLSASDYPLMSQDDILHIFSY 184 (411)
Q Consensus 155 ~~~~wdyfi~LSgsDyPL~t~~~l~~~fs~ 184 (411)
.+.|+++.+. .|-|+.+.+.|.+.+..
T Consensus 95 --~~~d~vlv~~-~D~P~~~~~~i~~l~~~ 121 (228)
T 1ezi_A 95 --SNSGTVTLLQ-PTSPLRTGAHIREAFSL 121 (228)
T ss_dssp --CCSEEEEECC-TTCTTCCHHHHHHHHTT
T ss_pred --CCCCEEEEEc-CCCCcCCHHHHHHHHHH
Confidence 3467776555 69999999998887653
No 12
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=34.92 E-value=1.9e+02 Score=25.41 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHHHHHc-CCC-CEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHh
Q 015219 77 ARVKRVLQAVY-HPM-NYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLK 154 (411)
Q Consensus 77 ~~l~RLl~aLy-hp~-n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 154 (411)
+.+.+.++++. .+. ..++|-.|. +. ++++++ .+ ++.++.......-++.+...+..++++.+
T Consensus 29 pli~~~i~~~~~~~~~~~ivv~~~~---~~----i~~~~~------~~-g~~~~~~~~~~~~~~~~~~~~v~~al~~~-- 92 (229)
T 1qwj_A 29 PLIGWVLRAALDAGVFQSVWVSTDH---DE----IENVAK------QF-GAQVHRRSSETSKDSSTSLDAIVEFLNYH-- 92 (229)
T ss_dssp EHHHHHHHHHHHHTCCSEEEEEESC---HH----HHHHHH------HT-TCEEEECCGGGSSTTCCHHHHHHHHHTTC--
T ss_pred EHHHHHHHHHHhCCCcCEEEEECCh---HH----HHHHHH------Hc-CCEEEeChhhhcCCCCcHHHHHHHHHHhc--
Confidence 56777777764 232 456666642 21 222221 12 34443222111123334444444444332
Q ss_pred cCCCCcEEEEecCCcccccChhHHHHHHc
Q 015219 155 QAKDWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 155 ~~~~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
.+.|+++.+. .|-|+.+.+.|.+.+.
T Consensus 93 --~~~d~vlv~~-~D~Pli~~~~i~~l~~ 118 (229)
T 1qwj_A 93 --NEVDIVGNIQ-ATSPCLHPTDLQKVAE 118 (229)
T ss_dssp --TTCSEEEEEC-TTCTTCCHHHHHHHHH
T ss_pred --CCCCEEEEec-CCCCcCCHHHHHHHHH
Confidence 2468887775 5999998888776554
No 13
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=30.69 E-value=2.3e+02 Score=26.47 Aligned_cols=108 Identities=10% Similarity=0.030 Sum_probs=61.6
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeC
Q 015219 61 ALPRLAYLISGTKGDGARVKRVLQAVYH---PMNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYK 137 (411)
Q Consensus 61 ~~~~iAYlIl~hk~d~~~l~RLl~aLyh---p~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 137 (411)
..|++..+|-+++ ..+.|.++|..+.. +...=+|=||..|++...+.++++.. ....++.++.. . -.-.
T Consensus 46 ~~~~vSViIp~yN-~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~-----~~~~~~~~~~~-~-~~n~ 117 (329)
T 3ckj_A 46 AGRTISVVLPALD-EEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGA-----RVVSREQALPE-V-PIRP 117 (329)
T ss_dssp TTCCEEEEEEESS-CTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTC-----EEEEHHHHCTT-S-CCCC
T ss_pred cCCcEEEEEeeCC-CHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhh-----hhccceeeecc-C-CCCC
Confidence 4589999999998 67889999988853 43233455887777665544443210 00112222210 0 1113
Q ss_pred CccHHHHHHHHHHHHHhcCCCCcEEEEecCCcccc--cChhHHHHHHc
Q 015219 138 GPTMIAATLHAVAILLKQAKDWDWFINLSASDYPL--MSQDDILHIFS 183 (411)
Q Consensus 138 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL--~t~~~l~~~fs 183 (411)
| ...|.-.+++.+ .-||++.|.+.|..+ -..+.+.+.+.
T Consensus 118 G--~~~a~n~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~ 158 (329)
T 3ckj_A 118 G--KGEALWRSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLL 158 (329)
T ss_dssp S--HHHHHHHHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHH
T ss_pred C--HHHHHHHHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHH
Confidence 3 344444444432 348999999999833 33456666653
No 14
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=29.47 E-value=2.9e+02 Score=25.68 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc
Q 015219 62 LPRLAYLISGTKGDGARVKRVLQAVY 87 (411)
Q Consensus 62 ~~~iAYlIl~hk~d~~~l~RLl~aLy 87 (411)
.++++.+|.+++ ..+.|.++|..|.
T Consensus 64 ~~~VSIIIP~yN-~~~~L~~~L~sl~ 88 (287)
T 2fy7_A 64 PHKVAIIIPFRN-RQEHLKYWLYYLH 88 (287)
T ss_dssp SCEEEEEEEESS-CHHHHHHHHHHHH
T ss_pred CCcEEEEEeeCC-CHHHHHHHHHHHH
Confidence 579999999998 7999999999886
No 15
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=23.18 E-value=24 Score=27.66 Aligned_cols=17 Identities=18% Similarity=0.669 Sum_probs=14.8
Q ss_pred cCCcccccChhHHHHHH
Q 015219 166 SASDYPLMSQDDILHIF 182 (411)
Q Consensus 166 SgsDyPL~t~~~l~~~f 182 (411)
.|.+||++|+.||...|
T Consensus 21 ~~a~FPI~s~~EL~~Al 37 (84)
T 1iio_A 21 AGADFPINSPEELMAAL 37 (84)
T ss_dssp TTSSSTTBHHHHHHHHC
T ss_pred cCCCCCCCCHHHHHHhC
Confidence 35799999999999876
No 16
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=22.91 E-value=1.2e+02 Score=26.30 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcC-C-CCEEEEEEeCCCChHHHHHHHHhhhhhccccccCceEEeCcceeeeeCCccHHHHHHHHHHHHHh
Q 015219 77 ARVKRVLQAVYH-P-MNYYVLHLDLEASDGERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGPTMIAATLHAVAILLK 154 (411)
Q Consensus 77 ~~l~RLl~aLyh-p-~n~y~IHvD~ks~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 154 (411)
..+.+.++++.. + -..++|-++.+. +..++.+++...+. ...++ ...-+|-++..+...+++.+-+
T Consensus 32 pli~~~l~~l~~~~~~~~i~vv~~~~~----~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~i~~~l~~~~~ 99 (236)
T 2vsh_A 32 PILIHTIEKFVLEPSIEKIVVGVHGDW----VSHAEDLVDKYLPL-YKERI-------IITKGGADRNTSIKNIIEAIDA 99 (236)
T ss_dssp EHHHHHHHHHHTCTTCCCEEEEECGGG----HHHHHHHHHHHCGG-GGGGE-------EEEECCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCeEEEEeCHHH----HHHHHHHHHhcccc-ccCce-------EEECCCCchHHHHHHHHHHHHh
Confidence 678888888863 2 245566665432 12233332211100 00122 2234566778888887776643
Q ss_pred cCC--CCcEEEEecCCcccccChhHHHHHHc
Q 015219 155 QAK--DWDWFINLSASDYPLMSQDDILHIFS 183 (411)
Q Consensus 155 ~~~--~wdyfi~LSgsDyPL~t~~~l~~~fs 183 (411)
... +.++++.+ ..|.|+.+.+.+...+.
T Consensus 100 ~~~~~~~~~vlv~-~~D~P~~~~~~i~~l~~ 129 (236)
T 2vsh_A 100 YRPLTPEDIVVTH-DSVRPFITLRMIQDNIQ 129 (236)
T ss_dssp HSCCCTTCEEEEE-ETTCTTCCHHHHHHHHH
T ss_pred hccCCCCCEEEEe-cCCcccCCHHHHHHHHH
Confidence 212 34665554 57999999988877654
No 17
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=21.98 E-value=3e+02 Score=22.64 Aligned_cols=94 Identities=10% Similarity=0.128 Sum_probs=57.2
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC-CCEEEEEEeCCCCh-HHHHHHHHhhhhhccccccCceEEeCcceeeeeCCc-
Q 015219 63 PRLAYLISGTKGDGARVKRVLQAVYHP-MNYYVLHLDLEASD-GERLELAKYVKSEKVIRDFKNVMVIGKADLVTYKGP- 139 (411)
Q Consensus 63 ~~iAYlIl~hk~d~~~l~RLl~aLyhp-~n~y~IHvD~ks~~-~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~- 139 (411)
|++..+|.+|..=.+-+...++.+..+ .+...|-+....+. ...++++++++... . ..|.|+.+ -|||.
T Consensus 4 M~i~iiivsHG~~A~gl~~~~~~i~G~~~~i~ai~~~~~~~~~~~~~~i~~~i~~~~---~-~gvliLtD----l~GGSp 75 (142)
T 3bed_A 4 MXPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAG---N-VPTLVLAD----LXGGTP 75 (142)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHHHC---S-CCEEEEES----STTSHH
T ss_pred CcccEEEEcChHHHHHHHHHHHHHcCCCCCEEEEEecCCCCHHHHHHHHHHHHHhcC---C-CCEEEEEE----CCCCHH
Confidence 667899999974457888888888765 55556666554433 35566766665322 3 56777643 23442
Q ss_pred cHHHHHHHHHHHHHhcCCCCcEEEEecCCccccc
Q 015219 140 TMIAATLHAVAILLKQAKDWDWFINLSASDYPLM 173 (411)
Q Consensus 140 S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPL~ 173 (411)
..++. .++.. -.-+..++|-..|+.
T Consensus 76 ~n~a~------~~~~~---~~~v~vi~GvNlpml 100 (142)
T 3bed_A 76 CNVAM------MAMGT---YPQLRVVAGLNLAMA 100 (142)
T ss_dssp HHHHH------HHTTT---CTTEEEEESCCHHHH
T ss_pred HHHHH------HHhcc---CCCEEEEeCCCHHHH
Confidence 33311 22222 135789999999974
Done!