BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>015220
MEGGGGGGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTM
TDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF
CRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP
DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK
ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE
NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL
LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI

High Scoring Gene Products

Symbol, full name Information P value
AT3G54190 protein from Arabidopsis thaliana 4.7e-183
AT2G38630 protein from Arabidopsis thaliana 1.2e-175

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  015220
        (411 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080305 - symbol:AT3G54190 "AT3G54190" species...  1776  4.7e-183  1
TAIR|locus:2064201 - symbol:AT2G38630 "AT2G38630" species...  1706  1.2e-175  1


>TAIR|locus:2080305 [details] [associations]
            symbol:AT3G54190 "AT3G54190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] InterPro:IPR017986 InterPro:IPR015943 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
            HOGENOM:HOG000238398 ProtClustDB:CLSN2689156 EMBL:AF360263
            EMBL:AY040076 EMBL:AF428345 IPI:IPI00523580 RefSeq:NP_566994.1
            UniGene:At.22584 ProteinModelPortal:Q9C5G8 IntAct:Q9C5G8
            EnsemblPlants:AT3G54190.1 GeneID:824586 KEGG:ath:AT3G54190
            TAIR:At3g54190 InParanoid:Q9C5G8 OMA:IFLYELQ PhylomeDB:Q9C5G8
            ArrayExpress:Q9C5G8 Genevestigator:Q9C5G8 Uniprot:Q9C5G8
        Length = 467

 Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
 Identities = 343/402 (85%), Positives = 371/402 (92%)

Query:     9 RRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFR 68
             RRI+ASPRPCSGRR++AKKR R     DGFVNSVKKLQRREISS++DRAF+++ AQERFR
Sbjct:     4 RRITASPRPCSGRRIVAKKRSRP----DGFVNSVKKLQRREISSRKDRAFSISTAQERFR 59

Query:    69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRI 128
             N+RL E+YDTHDPKGHC + LPFL KR+K+IEIVAARDIVFALA SGVCAAF RE+N+RI
Sbjct:    60 NMRLVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRI 119

Query:   129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188
             CFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CRSTRIEYI RG+PDAGFALFE
Sbjct:   120 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFE 179

Query:   189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248
             SESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDKNVQEIKISPGIMLL
Sbjct:   180 SESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 239

Query:   249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308
             IF +A+ HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR
Sbjct:   240 IFKRAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 299

Query:   309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNT 368
             N EL EVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNT
Sbjct:   300 NAELMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNT 359

Query:   369 NNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
             NNIYITSDQDLIISYCKAD++D   EGN G + +S ++   C
Sbjct:   360 NNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKC 401


>TAIR|locus:2064201 [details] [associations]
            symbol:AT2G38630 "AT2G38630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR017986 InterPro:IPR015943 EMBL:CP002685
            Gene3D:2.130.10.10 SUPFAM:SSF50978 UniGene:At.37270 EMBL:BT004257
            EMBL:BT005523 IPI:IPI00534024 RefSeq:NP_181397.2
            ProteinModelPortal:Q84J57 SMR:Q84J57 EnsemblPlants:AT2G38630.1
            GeneID:818445 KEGG:ath:AT2G38630 TAIR:At2g38630 eggNOG:NOG72858
            HOGENOM:HOG000238398 InParanoid:Q84J57 OMA:MMEGRRI PhylomeDB:Q84J57
            ProtClustDB:CLSN2689156 Genevestigator:Q84J57 Uniprot:Q84J57
        Length = 467

 Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
 Identities = 332/403 (82%), Positives = 365/403 (90%)

Query:     9 RRISASPRPCSG-RRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
             RRI A+PRPCSG RRV+AKKR R     DGFVNSVKKLQRREISS+ DRAF+++ AQERF
Sbjct:     5 RRIIANPRPCSGSRRVIAKKRSRP----DGFVNSVKKLQRREISSRMDRAFSISTAQERF 60

Query:    68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
             RN+RL E+YDTHDPKG+C + LP L KRSK+IEIVAARDIVFAL  SGVCA+F RETN++
Sbjct:    61 RNMRLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKK 120

Query:   128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
             +CFLNV+ DEVIRSLFYNKNNDSLITVSVYASDN+SSL+CRSTRIEYI RG+ DAGF LF
Sbjct:   121 VCFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLF 180

Query:   188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
             ESESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDKNVQEIKISPGIML
Sbjct:   181 ESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIML 240

Query:   248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
             LIF +A+ HVPLKILSIEDGT+LKSF+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct:   241 LIFKRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300

Query:   308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
             RN EL EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCN
Sbjct:   301 RNAELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCN 360

Query:   368 TNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMFVTC 409
             TNNIYITSDQDLIISYCKAD++D   EGN G + +S ++   C
Sbjct:   361 TNNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKC 403


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      411       405    0.0010  117 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  253 KB (2136 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.87u 0.11s 37.98t   Elapsed:  00:00:02
  Total cpu time:  37.87u 0.11s 37.98t   Elapsed:  00:00:02
  Start:  Fri May 10 11:05:34 2013   End:  Fri May 10 11:05:36 2013

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