BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015220
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WY3|B Chain B, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
           Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
 pdb|2WY3|D Chain D, Structure Of The Hcmv Ul16-Micb Complex Elucidates Select
           Binding Of A Viral Immunoevasin To Diverse Nkg2d Ligands
          Length = 158

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 11/55 (20%)

Query: 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD----NFSSL 165
           G+C + C        + NVT DE+I   F  ++N+S++ + +Y +D    NFS +
Sbjct: 32  GMCISICY-------YENVTEDEIIGVAFTWQHNESVVDLWLYQNDTVIRNFSDI 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,203,285
Number of Sequences: 62578
Number of extensions: 449707
Number of successful extensions: 1475
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1475
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)