Query 015220
Match_columns 411
No_of_seqs 47 out of 49
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00200 WD40 WD40 domain, foun 99.8 9E-17 1.9E-21 136.5 28.6 268 96-403 10-289 (289)
2 cd00200 WD40 WD40 domain, foun 99.7 3.8E-15 8.2E-20 126.6 27.2 189 197-410 56-254 (289)
3 PLN00181 protein SPA1-RELATED; 99.7 3.2E-15 6.9E-20 160.0 30.7 261 114-407 457-740 (793)
4 KOG0266 WD40 repeat-containing 99.7 5.1E-16 1.1E-20 157.6 20.0 187 202-410 168-369 (456)
5 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.7E-14 5.8E-19 127.9 27.5 267 107-410 3-284 (300)
6 KOG0281 Beta-TrCP (transducin 99.7 2.1E-17 4.6E-22 166.0 8.2 187 197-410 202-393 (499)
7 KOG0271 Notchless-like WD40 re 99.7 2.9E-16 6.3E-21 159.0 15.7 194 198-410 121-402 (480)
8 KOG0272 U4/U6 small nuclear ri 99.7 1.3E-15 2.8E-20 155.2 18.4 260 104-403 186-458 (459)
9 KOG0281 Beta-TrCP (transducin 99.7 1.8E-16 3.8E-21 159.5 11.7 228 140-408 198-431 (499)
10 KOG0279 G protein beta subunit 99.7 3.7E-15 8E-20 146.1 19.6 184 204-410 27-227 (315)
11 PTZ00421 coronin; Provisional 99.7 1.8E-14 3.8E-19 149.4 23.8 208 177-410 61-295 (493)
12 KOG0266 WD40 repeat-containing 99.7 1.1E-14 2.4E-19 148.0 21.5 188 202-409 212-413 (456)
13 KOG0274 Cdc4 and related F-box 99.7 1.7E-14 3.6E-19 151.5 23.2 260 105-410 218-487 (537)
14 KOG0295 WD40 repeat-containing 99.6 3.9E-15 8.5E-20 149.7 16.4 185 205-411 162-370 (406)
15 KOG0274 Cdc4 and related F-box 99.6 1.9E-14 4.1E-19 151.1 19.3 185 198-410 255-446 (537)
16 KOG0272 U4/U6 small nuclear ri 99.6 3E-15 6.5E-20 152.5 12.4 192 195-410 220-423 (459)
17 PLN00181 protein SPA1-RELATED; 99.6 2.5E-12 5.5E-17 137.9 29.5 189 198-405 581-793 (793)
18 KOG0295 WD40 repeat-containing 99.6 2.5E-14 5.5E-19 144.0 13.0 186 206-410 121-327 (406)
19 PTZ00420 coronin; Provisional 99.5 1.7E-12 3.7E-17 137.3 23.0 183 211-409 50-253 (568)
20 PTZ00420 coronin; Provisional 99.5 3.1E-12 6.7E-17 135.4 23.2 190 197-409 79-297 (568)
21 KOG0285 Pleiotropic regulator 99.5 5.2E-13 1.1E-17 134.9 14.9 194 190-408 149-351 (460)
22 KOG0271 Notchless-like WD40 re 99.5 7.8E-13 1.7E-17 134.4 15.5 183 203-410 215-444 (480)
23 PTZ00421 coronin; Provisional 99.4 1.8E-11 3.9E-16 127.2 23.3 158 235-408 77-248 (493)
24 KOG0263 Transcription initiati 99.4 4E-12 8.7E-17 136.4 17.1 183 202-408 460-652 (707)
25 KOG0306 WD40-repeat-containing 99.4 4E-11 8.8E-16 129.2 23.7 272 89-403 367-662 (888)
26 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 5.6E-10 1.2E-14 100.1 25.1 199 195-410 33-242 (300)
27 KOG0285 Pleiotropic regulator 99.4 1.1E-11 2.4E-16 125.4 14.5 163 224-410 140-312 (460)
28 KOG0319 WD40-repeat-containing 99.3 5.2E-11 1.1E-15 127.8 19.9 259 106-404 337-618 (775)
29 KOG0319 WD40-repeat-containing 99.3 6.2E-11 1.3E-15 127.3 20.1 249 120-410 308-582 (775)
30 KOG0315 G-protein beta subunit 99.3 1.6E-10 3.5E-15 113.0 16.9 183 204-407 9-247 (311)
31 KOG0265 U5 snRNP-specific prot 99.3 2.6E-10 5.5E-15 113.3 17.6 188 192-405 44-246 (338)
32 KOG0288 WD40 repeat protein Ti 99.3 5.2E-11 1.1E-15 121.8 12.8 190 198-410 225-422 (459)
33 KOG0291 WD40-repeat-containing 99.3 5.9E-10 1.3E-14 120.4 21.4 325 61-410 103-471 (893)
34 KOG0291 WD40-repeat-containing 99.2 5.2E-10 1.1E-14 120.9 20.5 182 202-409 359-554 (893)
35 KOG0282 mRNA splicing factor [ 99.2 4.4E-11 9.6E-16 123.8 11.3 191 197-410 219-467 (503)
36 KOG1446 Histone H3 (Lys4) meth 99.2 1.4E-09 2.9E-14 108.1 20.5 200 194-409 16-266 (311)
37 KOG0263 Transcription initiati 99.2 2.5E-10 5.4E-15 122.8 16.4 183 204-410 389-612 (707)
38 KOG0286 G-protein beta subunit 99.2 1.1E-09 2.5E-14 108.7 19.4 183 202-408 64-262 (343)
39 KOG0279 G protein beta subunit 99.2 1.1E-09 2.4E-14 108.1 18.5 183 203-410 73-267 (315)
40 KOG0275 Conserved WD40 repeat- 99.2 2E-11 4.4E-16 122.8 5.8 153 194-410 215-383 (508)
41 COG2319 FOG: WD40 repeat [Gene 99.2 9.5E-09 2.1E-13 89.9 21.6 185 203-409 120-318 (466)
42 KOG0313 Microtubule binding pr 99.2 5.3E-09 1.2E-13 106.5 22.3 328 36-403 35-416 (423)
43 KOG0316 Conserved WD40 repeat- 99.2 1.2E-09 2.5E-14 106.5 16.3 183 202-410 26-218 (307)
44 KOG0273 Beta-transducin family 99.1 1.5E-09 3.3E-14 112.6 17.5 182 190-410 280-487 (524)
45 KOG0286 G-protein beta subunit 99.1 3.6E-09 7.8E-14 105.2 19.2 189 188-403 138-343 (343)
46 KOG0315 G-protein beta subunit 99.1 2.3E-09 5E-14 105.0 16.9 187 203-409 93-292 (311)
47 KOG0305 Anaphase promoting com 99.1 5.4E-09 1.2E-13 109.4 20.7 256 105-406 189-462 (484)
48 KOG0313 Microtubule binding pr 99.1 1.4E-09 3.1E-14 110.5 15.8 194 190-408 145-379 (423)
49 KOG0318 WD40 repeat stress pro 99.1 7.5E-09 1.6E-13 108.7 20.1 182 207-409 162-354 (603)
50 COG2319 FOG: WD40 repeat [Gene 99.1 4.3E-08 9.3E-13 85.8 21.6 185 199-408 72-274 (466)
51 KOG0294 WD40 repeat-containing 99.1 4.2E-09 9.1E-14 105.4 16.5 197 186-407 36-283 (362)
52 KOG0308 Conserved WD40 repeat- 99.1 7.5E-10 1.6E-14 118.1 11.8 190 200-410 32-248 (735)
53 KOG0292 Vesicle coat complex C 99.0 3.9E-09 8.4E-14 115.9 15.5 182 205-409 63-284 (1202)
54 KOG0296 Angio-associated migra 99.0 5.1E-09 1.1E-13 106.1 14.6 254 112-404 125-397 (399)
55 KOG1539 WD repeat protein [Gen 99.0 1.2E-08 2.6E-13 111.2 17.6 205 185-410 386-611 (910)
56 KOG0276 Vesicle coat complex C 99.0 2.4E-08 5.3E-13 106.7 19.2 278 96-399 16-312 (794)
57 PRK11028 6-phosphogluconolacto 99.0 5.6E-07 1.2E-11 86.0 26.1 271 112-409 9-310 (330)
58 KOG0276 Vesicle coat complex C 99.0 1.2E-08 2.6E-13 109.0 16.1 190 197-410 18-220 (794)
59 KOG0306 WD40-repeat-containing 99.0 2E-08 4.3E-13 108.9 17.8 190 199-409 378-584 (888)
60 KOG0301 Phospholipase A2-activ 99.0 7.6E-09 1.7E-13 111.0 13.5 179 198-405 64-249 (745)
61 KOG0310 Conserved WD40 repeat- 98.9 1.4E-08 3.1E-13 105.5 14.9 186 203-410 78-273 (487)
62 KOG0265 U5 snRNP-specific prot 98.9 2.1E-08 4.6E-13 99.9 14.8 185 202-409 99-300 (338)
63 KOG0284 Polyadenylation factor 98.9 1.5E-08 3.4E-13 103.9 14.1 254 108-403 111-378 (464)
64 KOG0284 Polyadenylation factor 98.9 4.2E-09 9.1E-14 108.0 9.8 183 201-407 104-296 (464)
65 KOG0308 Conserved WD40 repeat- 98.9 3.4E-08 7.4E-13 105.7 16.7 216 162-387 16-277 (735)
66 KOG0646 WD40 repeat protein [G 98.9 3.5E-08 7.6E-13 102.3 16.1 228 161-410 39-312 (476)
67 KOG0267 Microtubule severing p 98.9 2.5E-09 5.3E-14 115.3 8.0 184 204-410 39-231 (825)
68 KOG0310 Conserved WD40 repeat- 98.9 1.3E-07 2.8E-12 98.4 20.0 173 196-386 114-300 (487)
69 KOG0282 mRNA splicing factor [ 98.9 5.3E-09 1.2E-13 108.6 9.3 160 222-408 201-375 (503)
70 KOG0318 WD40 repeat stress pro 98.9 1.3E-07 2.7E-12 99.7 19.2 195 193-410 59-270 (603)
71 KOG0292 Vesicle coat complex C 98.8 3.4E-08 7.3E-13 108.7 14.1 194 187-405 5-236 (1202)
72 KOG0301 Phospholipase A2-activ 98.8 2.7E-08 5.9E-13 106.9 13.1 177 205-410 25-212 (745)
73 KOG0289 mRNA splicing factor [ 98.8 4.9E-07 1.1E-11 93.7 20.4 259 99-387 225-498 (506)
74 KOG0646 WD40 repeat protein [G 98.8 3.9E-08 8.5E-13 101.9 12.2 177 211-410 14-211 (476)
75 KOG0264 Nucleosome remodeling 98.8 9.1E-08 2E-12 98.5 14.6 195 191-405 120-347 (422)
76 KOG4283 Transcription-coupled 98.8 1.6E-07 3.6E-12 94.1 15.5 190 198-408 49-279 (397)
77 KOG0303 Actin-binding protein 98.8 9E-08 2E-12 98.3 13.9 158 176-383 66-234 (472)
78 KOG0640 mRNA cleavage stimulat 98.8 9.3E-08 2E-12 96.3 13.1 193 202-411 121-341 (430)
79 KOG0645 WD40 repeat protein [G 98.7 3.2E-06 6.9E-11 83.9 22.4 191 197-406 19-226 (312)
80 KOG0277 Peroxisomal targeting 98.7 2.2E-07 4.7E-12 91.6 13.3 186 198-408 66-268 (311)
81 KOG0278 Serine/threonine kinas 98.7 1.9E-07 4.1E-12 92.0 12.8 184 197-408 105-300 (334)
82 KOG0643 Translation initiation 98.7 1.9E-06 4E-11 85.6 19.0 185 202-410 19-225 (327)
83 KOG0299 U3 snoRNP-associated p 98.7 5.2E-07 1.1E-11 93.7 15.1 187 203-407 212-412 (479)
84 KOG0305 Anaphase promoting com 98.7 4.6E-07 1E-11 95.2 15.0 176 212-410 194-381 (484)
85 KOG0643 Translation initiation 98.7 1.3E-06 2.8E-11 86.7 17.1 185 193-388 50-254 (327)
86 KOG0288 WD40 repeat protein Ti 98.6 6.1E-08 1.3E-12 99.7 7.3 186 197-409 180-375 (459)
87 KOG0772 Uncharacterized conser 98.6 4.4E-07 9.6E-12 95.7 13.6 189 202-406 176-395 (641)
88 KOG0639 Transducin-like enhanc 98.6 1.1E-07 2.5E-12 100.0 9.1 106 287-408 472-584 (705)
89 KOG1408 WD40 repeat protein [F 98.6 6.8E-07 1.5E-11 97.2 14.6 155 235-410 461-676 (1080)
90 KOG0289 mRNA splicing factor [ 98.6 1.9E-06 4.1E-11 89.6 17.2 192 192-406 217-420 (506)
91 KOG0293 WD40 repeat-containing 98.6 3.8E-07 8.2E-12 94.3 11.9 156 235-407 226-386 (519)
92 KOG0300 WD40 repeat-containing 98.6 9.9E-07 2.1E-11 89.4 14.5 178 207-406 162-387 (481)
93 PRK11028 6-phosphogluconolacto 98.6 1.5E-05 3.3E-10 76.2 21.7 187 206-405 3-205 (330)
94 PLN02919 haloacid dehalogenase 98.6 1.3E-05 2.9E-10 90.7 24.4 209 187-409 618-892 (1057)
95 KOG0299 U3 snoRNP-associated p 98.5 1E-06 2.2E-11 91.6 13.5 150 235-410 204-361 (479)
96 KOG0273 Beta-transducin family 98.5 3.6E-06 7.9E-11 88.0 17.3 183 203-410 245-445 (524)
97 KOG0278 Serine/threonine kinas 98.5 2.1E-06 4.6E-11 84.8 14.6 205 119-352 85-301 (334)
98 KOG1446 Histone H3 (Lys4) meth 98.5 2.8E-05 6.1E-10 77.9 22.5 244 97-361 16-276 (311)
99 KOG2048 WD40 repeat protein [G 98.5 2.3E-05 5E-10 84.7 22.9 179 190-387 73-267 (691)
100 KOG0302 Ribosome Assembly prot 98.5 3.2E-06 6.8E-11 86.8 15.5 182 204-406 164-379 (440)
101 KOG0293 WD40 repeat-containing 98.5 1.1E-06 2.3E-11 91.1 12.2 240 134-405 257-513 (519)
102 KOG0296 Angio-associated migra 98.5 1.9E-05 4.1E-10 80.8 19.8 186 202-410 73-268 (399)
103 KOG1407 WD40 repeat protein [F 98.4 2.4E-05 5.3E-10 77.6 17.3 197 186-408 55-264 (313)
104 PF13360 PQQ_2: PQQ-like domai 98.4 0.0001 2.2E-09 66.0 20.0 182 203-410 35-235 (238)
105 TIGR03300 assembly_YfgL outer 98.4 0.0003 6.6E-09 68.8 24.7 266 102-410 62-343 (377)
106 KOG0275 Conserved WD40 repeat- 98.4 2.3E-06 5E-11 87.0 10.2 185 204-409 274-471 (508)
107 PRK03629 tolB translocation pr 98.3 4.6E-05 1E-09 77.4 19.7 176 214-409 178-367 (429)
108 KOG1539 WD repeat protein [Gen 98.3 9.2E-05 2E-09 81.7 22.3 191 194-407 113-320 (910)
109 PRK01742 tolB translocation pr 98.3 7.1E-05 1.5E-09 75.7 18.7 182 202-409 212-407 (429)
110 PLN02919 haloacid dehalogenase 98.3 0.00026 5.7E-09 80.5 25.1 205 191-410 566-838 (1057)
111 PRK01742 tolB translocation pr 98.3 4.3E-05 9.3E-10 77.2 16.8 168 214-409 183-365 (429)
112 KOG0772 Uncharacterized conser 98.2 2.9E-05 6.2E-10 82.4 15.4 222 130-406 208-446 (641)
113 KOG0641 WD40 repeat protein [G 98.2 3.9E-05 8.5E-10 75.4 15.0 229 126-410 22-266 (350)
114 PRK04922 tolB translocation pr 98.2 0.00016 3.6E-09 73.0 20.0 177 214-410 183-373 (433)
115 KOG0267 Microtubule severing p 98.2 1.5E-06 3.3E-11 94.3 5.5 117 276-410 66-189 (825)
116 KOG0283 WD40 repeat-containing 98.2 1.1E-05 2.4E-10 87.9 12.1 181 203-406 277-482 (712)
117 KOG1274 WD40 repeat protein [G 98.2 0.00022 4.8E-09 79.3 22.0 194 165-371 68-287 (933)
118 KOG2919 Guanine nucleotide-bin 98.2 1.7E-05 3.7E-10 80.6 12.4 191 202-408 58-331 (406)
119 KOG2096 WD40 repeat protein [G 98.2 8.5E-05 1.8E-09 75.6 16.3 185 203-405 96-308 (420)
120 KOG0283 WD40 repeat-containing 98.2 3.6E-05 7.9E-10 84.1 14.7 158 190-404 404-575 (712)
121 KOG0268 Sof1-like rRNA process 98.1 1.3E-05 2.8E-10 82.2 10.4 180 207-407 81-304 (433)
122 PF10282 Lactonase: Lactonase, 98.1 0.011 2.3E-07 58.4 32.2 206 193-410 87-329 (345)
123 KOG1273 WD40 repeat protein [G 98.1 9.8E-05 2.1E-09 75.0 16.3 183 202-405 32-226 (405)
124 KOG0321 WD40 repeat-containing 98.1 4.7E-05 1E-09 82.2 14.4 176 206-387 113-339 (720)
125 KOG0650 WD40 repeat nucleolar 98.1 8.9E-05 1.9E-09 79.8 16.3 189 202-405 409-637 (733)
126 KOG0973 Histone transcription 98.1 0.00011 2.5E-09 82.2 17.5 204 184-407 60-357 (942)
127 KOG2110 Uncharacterized conser 98.1 0.00052 1.1E-08 70.5 20.5 224 143-407 10-250 (391)
128 PRK05137 tolB translocation pr 98.1 0.00068 1.5E-08 68.5 21.2 173 215-408 182-369 (435)
129 TIGR02800 propeller_TolB tol-p 98.1 0.00047 1E-08 67.6 19.5 177 215-409 170-358 (417)
130 KOG0303 Actin-binding protein 98.1 2.7E-05 5.8E-10 80.6 11.2 151 243-410 43-208 (472)
131 KOG0973 Histone transcription 98.1 5.3E-05 1.1E-09 84.8 14.2 158 203-406 23-202 (942)
132 PF00400 WD40: WD domain, G-be 98.1 8.3E-06 1.8E-10 55.2 5.0 39 350-403 1-39 (39)
133 PRK03629 tolB translocation pr 98.1 0.0006 1.3E-08 69.4 20.6 182 203-404 208-405 (429)
134 KOG1272 WD40-repeat-containing 98.0 7.2E-06 1.6E-10 85.9 5.6 180 203-406 139-324 (545)
135 KOG0316 Conserved WD40 repeat- 98.0 3.4E-05 7.3E-10 76.0 9.9 113 276-406 13-132 (307)
136 KOG0277 Peroxisomal targeting 98.0 2.2E-05 4.8E-10 77.7 8.0 103 287-406 70-179 (311)
137 PF13360 PQQ_2: PQQ-like domai 98.0 0.00073 1.6E-08 60.6 17.2 138 259-410 5-145 (238)
138 PRK04922 tolB translocation pr 98.0 0.0013 2.8E-08 66.6 20.8 185 203-407 213-413 (433)
139 KOG0270 WD40 repeat-containing 98.0 0.00026 5.7E-09 73.9 15.9 180 200-408 251-452 (463)
140 KOG1036 Mitotic spindle checkp 97.9 0.0023 5E-08 64.6 21.8 245 130-409 7-266 (323)
141 KOG0269 WD40 repeat-containing 97.9 6.3E-05 1.4E-09 82.5 11.1 178 196-388 137-333 (839)
142 KOG0269 WD40 repeat-containing 97.9 2.2E-05 4.7E-10 86.0 7.4 134 258-409 111-254 (839)
143 KOG0270 WD40 repeat-containing 97.9 0.00058 1.3E-08 71.4 17.1 227 146-405 134-404 (463)
144 PRK02889 tolB translocation pr 97.9 0.0017 3.6E-08 65.9 20.0 186 205-410 164-365 (427)
145 KOG4328 WD40 protein [Function 97.9 0.00019 4.1E-09 75.2 13.4 181 198-404 192-398 (498)
146 KOG0294 WD40 repeat-containing 97.9 8.2E-05 1.8E-09 75.3 10.1 115 277-409 40-161 (362)
147 KOG0645 WD40 repeat protein [G 97.9 0.0024 5.3E-08 63.9 19.9 180 203-405 71-261 (312)
148 KOG0647 mRNA export protein (c 97.9 0.00045 9.7E-09 69.8 14.9 173 197-384 32-217 (347)
149 TIGR02800 propeller_TolB tol-p 97.8 0.0041 8.9E-08 61.0 21.4 175 202-387 198-386 (417)
150 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.0035 7.5E-08 64.0 21.3 209 194-410 48-292 (352)
151 KOG1036 Mitotic spindle checkp 97.8 0.0011 2.3E-08 67.0 16.9 175 197-387 18-199 (323)
152 KOG1408 WD40 repeat protein [F 97.8 0.00021 4.6E-09 78.5 12.7 183 206-405 517-713 (1080)
153 PRK00178 tolB translocation pr 97.8 0.0043 9.4E-08 62.1 21.0 175 216-409 178-367 (430)
154 PRK05137 tolB translocation pr 97.8 0.0036 7.9E-08 63.3 20.6 187 203-408 211-415 (435)
155 KOG1007 WD repeat protein TSSC 97.8 0.00023 4.9E-09 71.8 11.6 193 151-403 77-287 (370)
156 KOG2055 WD40 repeat protein [G 97.8 0.00086 1.9E-08 70.6 16.0 179 206-406 226-418 (514)
157 KOG1034 Transcriptional repres 97.8 0.00087 1.9E-08 68.4 15.5 140 243-387 103-271 (385)
158 KOG0268 Sof1-like rRNA process 97.8 0.00014 3E-09 74.8 9.8 165 216-403 168-343 (433)
159 KOG1034 Transcriptional repres 97.7 0.00068 1.5E-08 69.1 14.2 190 200-405 143-383 (385)
160 KOG0650 WD40 repeat nucleolar 97.7 0.00069 1.5E-08 73.2 14.7 271 108-402 415-732 (733)
161 PRK02889 tolB translocation pr 97.7 0.0066 1.4E-07 61.6 20.9 174 203-387 205-392 (427)
162 KOG4328 WD40 protein [Function 97.7 0.00071 1.5E-08 71.1 13.9 183 197-408 239-453 (498)
163 PF02239 Cytochrom_D1: Cytochr 97.7 0.0045 9.7E-08 62.7 19.2 184 206-410 7-207 (369)
164 KOG1274 WD40 repeat protein [G 97.7 0.0014 3E-08 73.3 16.7 181 202-409 22-222 (933)
165 KOG0300 WD40 repeat-containing 97.7 0.00012 2.6E-09 74.6 7.9 129 259-405 172-344 (481)
166 PF08662 eIF2A: Eukaryotic tra 97.7 0.0024 5.1E-08 58.8 15.5 131 216-358 38-188 (194)
167 KOG4283 Transcription-coupled 97.6 0.00077 1.7E-08 68.3 12.3 174 197-406 193-377 (397)
168 PRK11138 outer membrane biogen 97.6 0.039 8.5E-07 55.0 24.1 228 102-355 66-319 (394)
169 KOG2096 WD40 repeat protein [G 97.6 0.0013 2.7E-08 67.3 13.5 173 202-384 196-392 (420)
170 PRK04792 tolB translocation pr 97.6 0.014 3E-07 60.1 21.0 196 190-408 218-427 (448)
171 TIGR03300 assembly_YfgL outer 97.5 0.067 1.4E-06 52.5 24.6 229 102-360 102-350 (377)
172 KOG2055 WD40 repeat protein [G 97.5 0.00071 1.5E-08 71.2 11.1 171 204-389 268-459 (514)
173 KOG1188 WD40 repeat protein [G 97.5 0.00091 2E-08 68.3 11.0 133 258-405 51-196 (376)
174 PRK04792 tolB translocation pr 97.5 0.013 2.9E-07 60.2 19.7 175 216-409 199-386 (448)
175 KOG1407 WD40 repeat protein [F 97.5 0.0047 1E-07 61.8 15.5 177 202-405 29-219 (313)
176 PRK00178 tolB translocation pr 97.5 0.027 5.8E-07 56.5 21.1 183 203-405 208-406 (430)
177 KOG0639 Transducin-like enhanc 97.4 0.0006 1.3E-08 72.7 9.2 181 203-397 475-665 (705)
178 KOG2111 Uncharacterized conser 97.4 0.03 6.5E-07 57.1 20.7 225 156-406 22-257 (346)
179 KOG1332 Vesicle coat complex C 97.4 0.0022 4.8E-08 63.6 12.3 157 202-362 20-209 (299)
180 PF00780 CNH: CNH domain; Int 97.4 0.04 8.8E-07 51.4 20.1 171 213-410 54-260 (275)
181 TIGR02658 TTQ_MADH_Hv methylam 97.4 0.22 4.9E-06 51.0 27.7 261 115-410 27-335 (352)
182 KOG0264 Nucleosome remodeling 97.4 0.0055 1.2E-07 64.0 15.1 185 189-404 180-403 (422)
183 KOG3881 Uncharacterized conser 97.4 0.007 1.5E-07 62.8 15.7 193 200-410 111-325 (412)
184 KOG1445 Tumor-specific antigen 97.3 0.00065 1.4E-08 74.1 8.6 144 235-407 592-752 (1012)
185 KOG0640 mRNA cleavage stimulat 97.3 0.0021 4.6E-08 65.6 11.2 179 104-349 227-426 (430)
186 KOG2048 WD40 repeat protein [G 97.3 0.023 5.1E-07 62.2 19.6 185 207-410 39-238 (691)
187 KOG0321 WD40 repeat-containing 97.3 0.00054 1.2E-08 74.3 7.2 107 293-409 115-252 (720)
188 PF08662 eIF2A: Eukaryotic tra 97.2 0.0056 1.2E-07 56.4 12.5 107 203-315 69-186 (194)
189 KOG1240 Protein kinase contain 97.2 0.015 3.2E-07 67.3 18.1 188 204-409 1060-1277(1431)
190 KOG2110 Uncharacterized conser 97.2 0.035 7.5E-07 57.5 19.2 183 206-410 17-209 (391)
191 KOG0322 G-protein beta subunit 97.2 0.0022 4.9E-08 64.1 10.3 57 333-404 264-322 (323)
192 KOG0641 WD40 repeat protein [G 97.2 0.16 3.4E-06 50.7 22.8 280 59-404 48-348 (350)
193 KOG0649 WD40 repeat protein [G 97.2 0.015 3.2E-07 58.1 15.7 185 203-409 20-239 (325)
194 KOG0307 Vesicle coat complex C 97.2 0.00087 1.9E-08 75.9 7.9 191 198-407 122-329 (1049)
195 KOG1063 RNA polymerase II elon 97.2 0.0046 9.9E-08 67.8 12.7 203 164-404 49-296 (764)
196 KOG1517 Guanine nucleotide bin 97.2 0.012 2.5E-07 67.5 16.0 188 202-406 1120-1334(1387)
197 KOG4547 WD40 repeat-containing 97.1 0.005 1.1E-07 66.0 12.6 161 205-411 5-178 (541)
198 KOG0290 Conserved WD40 repeat- 97.1 0.0025 5.5E-08 64.5 9.7 131 259-406 175-319 (364)
199 KOG0647 mRNA export protein (c 97.1 0.031 6.8E-07 56.9 16.7 245 128-404 19-280 (347)
200 KOG0307 Vesicle coat complex C 97.0 0.0018 3.9E-08 73.5 7.7 182 207-410 82-289 (1049)
201 KOG3881 Uncharacterized conser 97.0 0.015 3.3E-07 60.4 13.6 186 201-410 65-282 (412)
202 PF10282 Lactonase: Lactonase, 96.9 0.5 1.1E-05 46.7 31.0 209 190-409 34-281 (345)
203 KOG0649 WD40 repeat protein [G 96.9 0.035 7.6E-07 55.5 15.1 148 200-360 122-287 (325)
204 PRK11138 outer membrane biogen 96.8 0.4 8.6E-06 47.9 22.2 212 103-347 158-392 (394)
205 KOG4378 Nuclear protein COP1 [ 96.7 0.046 1E-06 58.8 15.4 234 139-407 37-282 (673)
206 PF02239 Cytochrom_D1: Cytochr 96.7 0.017 3.6E-07 58.7 11.8 98 294-410 10-113 (369)
207 KOG0642 Cell-cycle nuclear pro 96.7 0.0048 1E-07 66.2 8.2 109 281-407 295-428 (577)
208 KOG1517 Guanine nucleotide bin 96.7 0.045 9.8E-07 62.9 16.0 201 186-406 1058-1288(1387)
209 KOG0302 Ribosome Assembly prot 96.6 0.011 2.3E-07 61.6 9.7 100 203-309 268-379 (440)
210 KOG2106 Uncharacterized conser 96.6 0.1 2.2E-06 56.2 16.9 167 215-403 134-314 (626)
211 KOG2106 Uncharacterized conser 96.6 0.054 1.2E-06 58.3 14.7 140 197-347 159-314 (626)
212 KOG0771 Prolactin regulatory e 96.5 0.0059 1.3E-07 63.4 7.0 133 235-409 85-219 (398)
213 PRK01029 tolB translocation pr 96.5 0.47 1E-05 48.9 20.8 195 190-409 185-407 (428)
214 KOG0974 WD-repeat protein WDR6 96.5 0.052 1.1E-06 61.6 14.2 184 199-406 94-289 (967)
215 KOG1273 WD40 repeat protein [G 96.4 0.0043 9.3E-08 63.4 5.2 63 333-410 36-100 (405)
216 KOG0642 Cell-cycle nuclear pro 96.4 0.048 1E-06 58.8 13.1 183 207-409 308-565 (577)
217 KOG1009 Chromatin assembly com 96.4 0.068 1.5E-06 56.0 13.4 151 232-387 12-187 (434)
218 KOG1963 WD40 repeat protein [G 96.3 0.12 2.7E-06 57.8 16.2 195 199-408 64-284 (792)
219 KOG1587 Cytoplasmic dynein int 96.3 0.25 5.5E-06 53.6 18.1 112 276-406 394-517 (555)
220 KOG4378 Nuclear protein COP1 [ 96.3 0.042 9E-07 59.1 11.9 187 195-408 35-242 (673)
221 KOG0771 Prolactin regulatory e 96.3 0.042 9.1E-07 57.3 11.4 179 196-387 148-346 (398)
222 PRK01029 tolB translocation pr 96.2 0.65 1.4E-05 47.9 19.4 177 217-410 167-364 (428)
223 KOG1007 WD repeat protein TSSC 96.1 0.048 1.1E-06 55.5 10.9 92 212-349 190-289 (370)
224 KOG2695 WD40 repeat protein [G 96.1 0.0095 2.1E-07 61.5 5.8 118 278-410 250-381 (425)
225 PF15492 Nbas_N: Neuroblastoma 96.1 0.25 5.4E-06 49.7 15.5 207 156-406 23-260 (282)
226 KOG0644 Uncharacterized conser 96.1 0.0033 7.1E-08 70.3 2.4 89 257-351 212-302 (1113)
227 KOG2445 Nuclear pore complex c 95.8 0.47 1E-05 48.8 16.0 241 131-403 8-316 (361)
228 KOG2111 Uncharacterized conser 95.6 0.4 8.6E-06 49.3 14.8 178 212-410 23-217 (346)
229 KOG1445 Tumor-specific antigen 95.5 0.099 2.1E-06 57.8 10.7 135 257-406 55-201 (1012)
230 PF02897 Peptidase_S9_N: Proly 95.5 3 6.6E-05 41.6 23.7 202 197-410 174-409 (414)
231 KOG0974 WD-repeat protein WDR6 95.5 0.071 1.5E-06 60.6 9.9 183 192-410 10-210 (967)
232 KOG0644 Uncharacterized conser 95.5 0.015 3.2E-07 65.4 4.5 101 199-308 197-300 (1113)
233 KOG1009 Chromatin assembly com 95.4 0.16 3.4E-06 53.4 11.5 102 294-410 28-158 (434)
234 smart00320 WD40 WD40 repeats. 95.3 0.048 1.1E-06 32.5 4.7 39 350-403 2-40 (40)
235 KOG1188 WD40 repeat protein [G 95.3 0.035 7.6E-07 57.1 6.3 60 332-406 41-103 (376)
236 PF07433 DUF1513: Protein of u 95.3 2.8 6E-05 42.8 19.5 215 114-410 16-252 (305)
237 PF11768 DUF3312: Protein of u 95.0 2 4.3E-05 46.8 18.5 169 208-408 151-332 (545)
238 KOG2321 WD40 repeat protein [G 94.9 0.63 1.4E-05 51.1 14.4 189 203-409 61-306 (703)
239 KOG2919 Guanine nucleotide-bin 94.8 0.094 2E-06 54.1 7.6 116 279-407 45-190 (406)
240 KOG4547 WD40 repeat-containing 94.6 1 2.2E-05 48.9 15.1 161 213-387 39-211 (541)
241 KOG1063 RNA polymerase II elon 94.5 0.15 3.3E-06 56.4 8.8 185 205-407 419-650 (764)
242 KOG1272 WD40-repeat-containing 94.5 0.088 1.9E-06 56.2 6.8 206 108-349 144-362 (545)
243 KOG1538 Uncharacterized conser 94.4 0.21 4.5E-06 55.7 9.6 67 283-352 15-88 (1081)
244 KOG3914 WD repeat protein WDR4 94.2 0.087 1.9E-06 54.8 5.8 145 235-410 75-228 (390)
245 KOG2315 Predicted translation 94.1 3.7 8E-05 44.9 17.9 182 214-410 145-349 (566)
246 PF03178 CPSF_A: CPSF A subuni 94.1 6.2 0.00013 38.4 20.1 131 215-349 2-157 (321)
247 KOG0290 Conserved WD40 repeat- 93.8 2.3 5.1E-05 43.7 14.9 175 198-382 156-353 (364)
248 COG2706 3-carboxymuconate cycl 93.8 7.8 0.00017 40.3 18.8 178 139-329 147-345 (346)
249 PF00400 WD40: WD domain, G-be 93.7 0.14 3.1E-06 34.3 4.4 30 318-347 6-39 (39)
250 PRK04043 tolB translocation pr 93.7 9.9 0.00022 39.5 20.9 161 235-409 189-361 (419)
251 PF00780 CNH: CNH domain; Int 93.6 6.3 0.00014 36.9 23.0 236 105-361 7-268 (275)
252 KOG3914 WD repeat protein WDR4 93.4 0.97 2.1E-05 47.4 11.6 108 243-359 118-234 (390)
253 PF08450 SGL: SMP-30/Gluconola 93.0 7.4 0.00016 36.0 20.3 178 195-383 42-243 (246)
254 KOG1240 Protein kinase contain 93.0 1.1 2.5E-05 52.6 12.5 243 94-353 1047-1339(1431)
255 cd00216 PQQ_DH Dehydrogenases 92.9 14 0.0003 38.8 21.3 230 106-357 111-433 (488)
256 cd00216 PQQ_DH Dehydrogenases 92.7 15 0.00032 38.6 22.4 138 201-341 294-458 (488)
257 KOG1587 Cytoplasmic dynein int 92.4 3.4 7.3E-05 45.1 14.6 183 198-406 248-473 (555)
258 KOG2445 Nuclear pore complex c 92.2 8.7 0.00019 39.9 16.4 186 202-406 22-257 (361)
259 KOG1332 Vesicle coat complex C 92.2 1.7 3.6E-05 43.8 11.1 247 131-403 6-284 (299)
260 KOG1524 WD40 repeat-containing 92.0 4.7 0.0001 44.5 14.9 149 202-386 113-277 (737)
261 KOG1538 Uncharacterized conser 92.0 0.22 4.8E-06 55.5 5.2 51 332-388 25-76 (1081)
262 PF06977 SdiA-regulated: SdiA- 91.9 14 0.00029 36.4 20.7 147 234-383 65-239 (248)
263 KOG1963 WD40 repeat protein [G 91.9 9.2 0.0002 43.5 17.4 178 191-406 344-539 (792)
264 PRK04043 tolB translocation pr 91.7 18 0.0004 37.5 22.1 172 203-386 197-388 (419)
265 PF06433 Me-amine-dh_H: Methyl 91.7 6.1 0.00013 41.0 14.8 55 340-410 266-325 (342)
266 KOG4190 Uncharacterized conser 90.4 1 2.2E-05 49.7 8.1 138 258-410 758-911 (1034)
267 KOG2394 WD40 protein DMR-N9 [G 90.2 1.3 2.9E-05 48.3 8.8 60 333-410 303-367 (636)
268 KOG4227 WD40 repeat protein [G 90.0 4.9 0.00011 43.0 12.5 157 184-349 45-225 (609)
269 KOG2321 WD40 repeat protein [G 88.8 1.5 3.2E-05 48.3 7.9 180 140-386 137-334 (703)
270 KOG1310 WD40 repeat protein [G 88.7 0.25 5.5E-06 53.9 2.2 47 349-410 39-85 (758)
271 KOG2314 Translation initiation 87.5 13 0.00028 41.2 13.9 207 163-386 280-513 (698)
272 PF02897 Peptidase_S9_N: Proly 87.3 34 0.00074 34.3 19.6 167 184-353 217-409 (414)
273 PF05935 Arylsulfotrans: Aryls 87.1 44 0.00095 35.4 19.1 153 243-410 114-306 (477)
274 KOG4497 Uncharacterized conser 87.0 0.58 1.2E-05 48.8 3.4 194 203-408 101-353 (447)
275 KOG4190 Uncharacterized conser 86.9 0.96 2.1E-05 49.8 5.1 123 275-408 730-862 (1034)
276 KOG1310 WD40 repeat protein [G 86.9 2.8 6E-05 46.3 8.5 113 276-405 46-178 (758)
277 KOG2394 WD40 protein DMR-N9 [G 86.8 4.3 9.3E-05 44.6 9.9 74 286-362 296-376 (636)
278 KOG4532 WD40-like repeat conta 86.8 41 0.00089 34.7 16.6 188 204-408 83-285 (344)
279 COG2706 3-carboxymuconate cycl 86.5 24 0.00051 36.9 14.6 155 247-410 5-180 (346)
280 KOG0322 G-protein beta subunit 86.1 1.7 3.6E-05 44.2 6.0 92 210-307 222-322 (323)
281 KOG1354 Serine/threonine prote 86.0 1.2 2.6E-05 46.6 5.1 173 198-379 219-428 (433)
282 PF08553 VID27: VID27 cytoplas 85.7 12 0.00025 42.8 13.0 126 255-386 502-639 (794)
283 KOG1064 RAVE (regulator of V-A 85.6 2.5 5.5E-05 51.8 8.0 160 209-406 2224-2399(2439)
284 PF04053 Coatomer_WDAD: Coatom 84.7 20 0.00043 38.1 13.4 127 235-386 34-165 (443)
285 PHA02713 hypothetical protein; 83.2 72 0.0016 34.4 17.3 153 239-408 347-536 (557)
286 PF03178 CPSF_A: CPSF A subuni 83.0 46 0.00099 32.4 14.3 80 300-387 62-149 (321)
287 PRK10115 protease 2; Provision 82.2 89 0.0019 34.8 21.8 195 196-408 175-397 (686)
288 PF04053 Coatomer_WDAD: Coatom 82.2 56 0.0012 34.7 15.6 139 194-351 34-175 (443)
289 PF14761 HPS3_N: Hermansky-Pud 81.7 37 0.0008 33.3 12.9 139 203-363 27-184 (215)
290 PF11715 Nup160: Nucleoporin N 81.6 4.7 0.0001 42.3 7.5 34 367-410 216-253 (547)
291 PF07569 Hira: TUP1-like enhan 81.1 7.9 0.00017 36.9 8.1 69 182-253 1-87 (219)
292 PF08450 SGL: SMP-30/Gluconola 80.0 51 0.0011 30.6 22.7 191 195-410 2-217 (246)
293 COG5354 Uncharacterized protei 79.1 60 0.0013 35.8 14.6 160 230-406 170-349 (561)
294 COG5170 CDC55 Serine/threonine 78.7 4 8.6E-05 42.6 5.6 75 322-405 171-252 (460)
295 PF03022 MRJP: Major royal jel 78.6 68 0.0015 31.8 14.0 95 235-330 2-119 (287)
296 smart00320 WD40 WD40 repeats. 77.5 6.2 0.00014 22.9 4.2 26 322-347 11-40 (40)
297 PF11715 Nup160: Nucleoporin N 77.3 6 0.00013 41.6 6.6 28 332-359 230-259 (547)
298 KOG4714 Nucleoporin [Nuclear s 76.8 9.5 0.00021 39.0 7.4 86 275-387 218-310 (319)
299 PF00930 DPPIV_N: Dipeptidyl p 76.1 21 0.00046 35.5 9.8 137 256-409 22-170 (353)
300 PF05096 Glu_cyclase_2: Glutam 75.7 94 0.002 31.4 19.3 170 224-410 32-208 (264)
301 COG4946 Uncharacterized protei 74.1 45 0.00097 36.8 12.0 119 277-410 356-482 (668)
302 KOG1354 Serine/threonine prote 74.0 22 0.00047 37.7 9.4 168 200-404 93-300 (433)
303 PHA03098 kelch-like protein; P 73.6 1E+02 0.0022 32.2 14.4 153 194-351 335-513 (534)
304 KOG1409 Uncharacterized conser 73.4 72 0.0016 33.9 12.9 187 200-405 24-270 (404)
305 PF04841 Vps16_N: Vps16, N-ter 73.2 1.2E+02 0.0026 31.5 15.7 43 195-240 83-129 (410)
306 PF08553 VID27: VID27 cytoplas 73.0 40 0.00087 38.7 11.9 97 298-407 502-607 (794)
307 KOG2315 Predicted translation 72.6 14 0.00029 40.7 7.9 130 142-272 223-396 (566)
308 COG5354 Uncharacterized protei 72.4 18 0.0004 39.5 8.7 102 202-307 41-159 (561)
309 PF13449 Phytase-like: Esteras 71.9 72 0.0016 31.8 12.3 129 235-387 21-168 (326)
310 COG5170 CDC55 Serine/threonine 70.8 17 0.00036 38.2 7.7 110 281-407 173-311 (460)
311 KOG4649 PQQ (pyrrolo-quinoline 70.3 1E+02 0.0022 32.0 12.9 206 105-338 23-245 (354)
312 PF14783 BBS2_Mid: Ciliary BBS 68.6 86 0.0019 27.9 12.2 35 196-232 6-40 (111)
313 PF07569 Hira: TUP1-like enhan 68.5 11 0.00024 36.0 5.5 66 88-155 5-85 (219)
314 KOG2114 Vacuolar assembly/sort 68.4 1.7E+02 0.0037 34.3 15.3 111 184-296 9-141 (933)
315 TIGR03074 PQQ_membr_DH membran 68.0 1.3E+02 0.0027 34.5 14.4 162 224-410 149-349 (764)
316 KOG4227 WD40 repeat protein [G 67.6 1.9E+02 0.0042 31.5 17.4 242 138-405 58-322 (609)
317 PF10395 Utp8: Utp8 family; I 67.4 2.3E+02 0.0049 32.3 19.6 153 198-357 135-314 (670)
318 KOG2695 WD40 repeat protein [G 67.3 28 0.00061 36.8 8.5 92 176-274 285-385 (425)
319 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.2 95 0.0021 33.5 12.8 115 288-410 67-194 (527)
320 KOG1275 PAB-dependent poly(A) 66.5 21 0.00046 41.7 8.0 109 290-408 147-257 (1118)
321 PF14761 HPS3_N: Hermansky-Pud 66.3 20 0.00043 35.2 6.8 78 303-387 1-81 (215)
322 PF13970 DUF4221: Domain of un 66.3 65 0.0014 32.0 10.7 111 299-410 66-191 (333)
323 PF14655 RAB3GAP2_N: Rab3 GTPa 65.7 34 0.00075 36.3 9.0 81 275-358 302-408 (415)
324 KOG0280 Uncharacterized conser 65.5 29 0.00063 36.0 8.1 91 256-354 147-248 (339)
325 KOG2314 Translation initiation 65.0 61 0.0013 36.3 10.8 77 197-275 215-300 (698)
326 PF01436 NHL: NHL repeat; Int 64.3 15 0.00032 24.3 4.0 28 192-220 1-28 (28)
327 KOG1409 Uncharacterized conser 63.1 10 0.00022 40.0 4.4 54 339-407 173-229 (404)
328 KOG2139 WD40 repeat protein [G 62.9 2.2E+02 0.0048 30.6 14.3 164 211-387 116-302 (445)
329 KOG0882 Cyclophilin-related pe 61.2 1.1E+02 0.0024 33.6 11.7 82 318-410 139-236 (558)
330 PF15065 NCU-G1: Lysosomal tra 60.6 49 0.0011 34.5 8.8 88 134-226 10-102 (350)
331 PF06977 SdiA-regulated: SdiA- 60.3 1.8E+02 0.0039 28.7 15.1 137 195-337 67-238 (248)
332 PF15492 Nbas_N: Neuroblastoma 60.0 50 0.0011 33.7 8.6 71 327-409 3-77 (282)
333 PF05096 Glu_cyclase_2: Glutam 59.9 1.2E+02 0.0025 30.7 11.0 77 283-362 47-133 (264)
334 COG4946 Uncharacterized protei 59.7 30 0.00065 38.1 7.3 272 113-409 88-435 (668)
335 KOG0309 Conserved WD40 repeat- 59.5 8.4 0.00018 44.0 3.3 136 227-372 61-208 (1081)
336 KOG1645 RING-finger-containing 58.3 40 0.00088 36.2 7.9 108 276-387 189-309 (463)
337 PF06433 Me-amine-dh_H: Methyl 57.6 30 0.00064 36.1 6.7 76 198-274 243-329 (342)
338 KOG2079 Vacuolar assembly/sort 56.4 82 0.0018 37.6 10.4 53 202-254 139-197 (1206)
339 smart00036 CNH Domain found in 51.7 2.6E+02 0.0055 27.8 17.1 37 321-359 244-281 (302)
340 KOG1334 WD40 repeat protein [G 51.2 11 0.00023 41.2 2.4 44 351-409 133-176 (559)
341 KOG2395 Protein involved in va 50.0 1.7E+02 0.0037 32.8 11.1 124 255-386 354-492 (644)
342 COG3391 Uncharacterized conser 49.8 3E+02 0.0065 28.1 22.2 183 193-386 74-273 (381)
343 KOG1334 WD40 repeat protein [G 48.5 83 0.0018 34.7 8.4 180 193-386 140-358 (559)
344 PHA02790 Kelch-like protein; P 47.8 3.6E+02 0.0079 28.4 15.6 146 203-352 317-473 (480)
345 PF14269 Arylsulfotran_2: Aryl 47.0 1.7E+02 0.0037 29.3 10.0 34 367-410 145-178 (299)
346 PF07433 DUF1513: Protein of u 46.4 62 0.0013 33.3 6.8 57 193-249 217-273 (305)
347 PHA03098 kelch-like protein; P 44.8 3.9E+02 0.0085 28.0 20.2 194 203-408 293-514 (534)
348 PF02333 Phytase: Phytase; In 44.5 42 0.00092 35.4 5.5 68 202-302 269-340 (381)
349 KOG4497 Uncharacterized conser 42.9 1.2E+02 0.0026 32.3 8.4 129 239-383 14-151 (447)
350 TIGR02276 beta_rpt_yvtn 40-res 42.5 1E+02 0.0022 20.6 5.7 29 204-232 3-31 (42)
351 COG1520 FOG: WD40-like repeat 40.9 3.8E+02 0.0083 26.7 23.9 221 102-387 65-307 (370)
352 PF07676 PD40: WD40-like Beta 39.9 85 0.0018 21.3 4.8 29 367-402 10-38 (39)
353 KOG1912 WD40 repeat protein [G 39.5 5E+02 0.011 30.7 12.9 97 212-314 32-149 (1062)
354 KOG4649 PQQ (pyrrolo-quinoline 39.4 4.4E+02 0.0095 27.6 11.4 25 289-313 22-46 (354)
355 PHA02713 hypothetical protein; 38.8 5.4E+02 0.012 27.9 13.4 152 194-351 344-536 (557)
356 KOG4640 Anaphase-promoting com 37.8 1.2E+02 0.0025 34.4 7.7 46 355-410 48-97 (665)
357 KOG1008 Uncharacterized conser 35.7 20 0.00043 40.5 1.5 138 250-405 122-275 (783)
358 KOG0309 Conserved WD40 repeat- 34.9 59 0.0013 37.6 5.0 105 200-349 122-232 (1081)
359 PF01731 Arylesterase: Arylest 34.3 1.4E+02 0.003 25.1 6.0 57 333-405 28-84 (86)
360 PHA02790 Kelch-like protein; P 32.5 6.2E+02 0.013 26.7 19.8 153 242-408 317-473 (480)
361 TIGR02604 Piru_Ver_Nterm putat 31.5 5.6E+02 0.012 25.9 13.5 96 283-384 74-202 (367)
362 KOG1524 WD40 repeat-containing 31.4 1E+02 0.0022 34.7 5.9 101 288-403 23-132 (737)
363 KOG0882 Cyclophilin-related pe 31.2 34 0.00073 37.4 2.3 64 319-387 5-76 (558)
364 PF03088 Str_synth: Strictosid 31.0 90 0.002 26.4 4.4 39 339-382 35-73 (89)
365 KOG3630 Nuclear pore complex, 30.2 2.6E+02 0.0056 34.1 9.1 155 196-388 105-266 (1405)
366 COG0823 TolB Periplasmic compo 30.0 6.9E+02 0.015 26.5 15.0 140 235-385 194-345 (425)
367 PF05935 Arylsulfotrans: Aryls 29.8 7.1E+02 0.015 26.5 17.7 35 332-366 283-319 (477)
368 COG1499 NMD3 NMD protein affec 29.3 2.8E+02 0.006 29.2 8.5 91 265-355 230-327 (355)
369 TIGR03074 PQQ_membr_DH membran 28.3 9.7E+02 0.021 27.6 21.2 150 240-410 313-482 (764)
370 COG0823 TolB Periplasmic compo 28.3 5.2E+02 0.011 27.4 10.4 79 300-384 218-300 (425)
371 PF04435 SPK: Domain of unknow 28.1 64 0.0014 26.7 3.1 26 192-218 83-108 (109)
372 COG3823 Glutamine cyclotransfe 27.6 1.4E+02 0.0031 30.0 5.8 60 225-293 34-96 (262)
373 PF08470 NTNH_C: Nontoxic nonh 27.5 3.4E+02 0.0074 25.8 7.9 50 292-341 92-142 (165)
374 PF12894 Apc4_WD40: Anaphase-p 27.4 1.7E+02 0.0036 22.0 4.9 34 366-410 12-45 (47)
375 KOG0280 Uncharacterized conser 27.2 5.4E+02 0.012 27.1 9.9 58 333-405 179-241 (339)
376 PF08596 Lgl_C: Lethal giant l 27.0 7.6E+02 0.016 26.0 19.4 171 212-386 104-327 (395)
377 PRK05560 DNA gyrase subunit A; 26.9 1E+03 0.022 27.5 16.0 118 100-226 493-625 (805)
378 KOG1064 RAVE (regulator of V-A 26.9 4.9E+02 0.011 33.6 10.8 27 368-403 172-198 (2439)
379 PF04762 IKI3: IKI3 family; I 26.7 1.1E+03 0.024 27.7 16.0 187 94-308 425-639 (928)
380 PF04441 Pox_VERT_large: Poxvi 25.7 97 0.0021 34.9 4.6 13 370-382 235-247 (700)
381 KOG1832 HIV-1 Vpr-binding prot 25.7 82 0.0018 37.4 4.2 135 235-381 1103-1246(1516)
382 cd01205 WASP WASP-type EVH1 do 25.7 1.1E+02 0.0025 26.8 4.3 31 243-273 29-59 (105)
383 PF10210 MRP-S32: Mitochondria 25.5 57 0.0012 28.4 2.4 22 365-387 1-22 (96)
384 cd06919 Asp_decarbox Aspartate 24.9 57 0.0012 29.2 2.3 17 298-314 39-55 (111)
385 COG0853 PanD Aspartate 1-decar 24.4 57 0.0012 29.8 2.2 17 298-314 39-55 (126)
386 KOG2139 WD40 repeat protein [G 24.4 9.4E+02 0.02 26.2 12.8 146 203-348 248-430 (445)
387 PLN00145 tyrosine/nicotianamin 24.1 39 0.00084 34.8 1.3 12 1-12 1-12 (430)
388 PF05694 SBP56: 56kDa selenium 23.5 6.3E+02 0.014 27.8 10.0 96 298-405 220-342 (461)
389 PF10411 DsbC_N: Disulfide bon 23.2 59 0.0013 24.9 1.8 16 369-384 34-49 (57)
390 PF03262 Corona_6B_7B: Coronav 22.6 4.3E+02 0.0093 25.9 7.7 115 188-314 67-196 (209)
391 KOG4714 Nucleoporin [Nuclear s 21.6 1.1E+02 0.0025 31.5 3.9 75 301-379 160-248 (319)
392 cd04467 S1_aIF5A S1_aIF5A: Arc 21.5 1.5E+02 0.0032 23.5 3.8 29 292-320 6-34 (57)
393 KOG1275 PAB-dependent poly(A) 21.4 6.5E+02 0.014 30.3 10.1 154 191-352 174-345 (1118)
394 PF14583 Pectate_lyase22: Olig 21.2 1E+03 0.022 25.5 16.2 265 121-409 16-332 (386)
395 PRK05449 aspartate alpha-decar 21.0 75 0.0016 29.0 2.3 17 298-314 40-56 (126)
396 COG3386 Gluconolactonase [Carb 20.8 8.9E+02 0.019 24.6 11.6 132 200-381 42-178 (307)
397 COG1047 SlpA FKBP-type peptidy 20.7 80 0.0017 30.1 2.5 59 220-279 69-128 (174)
398 PF00930 DPPIV_N: Dipeptidyl p 20.4 8.6E+02 0.019 24.2 19.7 165 216-386 159-348 (353)
399 TIGR02604 Piru_Ver_Nterm putat 20.2 9E+02 0.02 24.4 12.4 108 300-409 47-176 (367)
400 COG0543 UbiB 2-polyprenylpheno 20.2 6.5E+02 0.014 24.3 8.7 86 225-311 21-119 (252)
401 PF14783 BBS2_Mid: Ciliary BBS 20.1 6.3E+02 0.014 22.5 9.5 65 291-361 16-83 (111)
402 PF15415 DUF4622: Protein of u 20.0 5.5E+02 0.012 26.4 8.2 96 192-295 76-190 (310)
No 1
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=9e-17 Score=136.45 Aligned_cols=268 Identities=16% Similarity=0.219 Sum_probs=195.8
Q ss_pred cceEEEeecc--ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehh
Q 015220 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (411)
Q Consensus 96 S~V~EIv~a~--dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~ 173 (411)
.+|..+-... +++++-...|....|+..+++.+..+... ...|.++-+...++.+++++. | ..++...+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~---~--~~i~i~~~--- 80 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGTYLASGSS---D--KTIRLWDL--- 80 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCCEEEEEcC---C--CeEEEEEc---
Confidence 4455555443 56777777899999999888876666544 344566666666666666442 2 12222222
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeC-CEEEEEE
Q 015220 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISP-GIMLLIF 250 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISd-G~~Lai~ 250 (411)
..++.-. -|.. .-..+-.+.|+.. ++.++....++.+++||+.+.++++.+..+ .|..+.+++ +.+++..
T Consensus 81 --~~~~~~~---~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 81 --ETGECVR---TLTG-HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred --CcccceE---EEec-cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 1111100 0110 0012233556554 677777778999999999999999998855 599999995 7777766
Q ss_pred ecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 251 q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
.. .-.+++|++.+++.+..+. .|..+|..+...++ .+++...+..+++||+.+++... +...|+..+..
T Consensus 154 ~~---~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~ 224 (289)
T cd00200 154 SQ---DGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG---TLRGHENGVNS 224 (289)
T ss_pred cC---CCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec---chhhcCCceEE
Confidence 52 2358999999999998844 77789999999999 57778889999999999988876 44467777777
Q ss_pred Eeec---eeEEEEe-cCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 329 LYEN---QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 329 Ly~s---qlFlSfs-d~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+..+ .++++.. +++|.+|++. |.++..+.+|.. .+..+.+++|+..+++++.|. +|++||
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~----------~i~iw~ 289 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-----SVTSLAWSPDGKRLASGSADG----------TIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC-----cEEEEEECCCCCEEEEecCCC----------eEEecC
Confidence 7655 5777776 9999999999 999999998887 799999999999999999987 999996
No 2
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.75 E-value=3.8e-15 Score=126.56 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=149.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
.+.|.. +++.++....++.++|||+.+.+.+.++..+ .+..+..+ ++.+++... ..-.+.+|++.+++....+
T Consensus 56 ~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 56 DVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred EEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEe
Confidence 566664 4466777778999999999998888877755 69999999 556666655 2346899999999999884
Q ss_pred eeccccCCcceeeeeeccee-EEeec-CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 274 NHLLHRNKKVDFIEQFNEKL-LVKQE-NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl-lIKQe-~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
. .|..+|..+..++++. ++-.. +..+.+||+.+++... +...|...+..+..+ +.+++. .++.|.+||
T Consensus 132 ~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 132 R---GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred c---cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce---eEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 4 7888999999999554 44444 8999999999888776 333566566666544 245445 799999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++ +.++..+..|.. .+..+..++|+.++++++.+. +|.+||+.+|+++
T Consensus 206 ~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~----------~i~i~~~~~~~~~ 254 (289)
T cd00200 206 LSTGKCLGTLRGHEN-----GVNSVAFSPDGYLLASGSEDG----------TIRVWDLRTGECV 254 (289)
T ss_pred CCCCceecchhhcCC-----ceEEEEEcCCCcEEEEEcCCC----------cEEEEEcCCceeE
Confidence 99 899999998877 788999999999999998665 9999999998864
No 3
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.73 E-value=3.2e-15 Score=159.99 Aligned_cols=261 Identities=14% Similarity=0.216 Sum_probs=184.2
Q ss_pred cccceeeecccccEEEEEeCC----CCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCccee
Q 015220 114 SGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFE 188 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s----~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~ 188 (411)
+|+|...+..+-+....++.+ +...|.++=|+...+-+++.+ .+ ..+ +.-..+.. ..++ +...|..+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg----~D-~~I--~iwd~~~~~~~~~-~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG----VN-KKI--KIFECESIIKDGR-DIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe----CC-CEE--EEEECCccccccc-ccccceEE
Confidence 677888776655555555543 677899999998776665543 22 122 22222211 1111 11112221
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEe
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I 264 (411)
-..-.....+-|+..++..|+.+..|++++|||+.+.+.+..+..+ .|..+.++ +|.+|++.... --++||++
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~ 605 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD---GSVKLWSI 605 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC---CEEEEEEC
Confidence 1111112345666667888999999999999999999999888765 79999997 57777776543 34999999
Q ss_pred cCCcEEeEeeeccccCCcceeeeee---cceeEEeecCceeeEEEcccce-EEEeeccccCCCceEEEEee--ceeEEEE
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYE--NQLFLTF 338 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~---~ekllIKQe~~~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~--sqlFlSf 338 (411)
.+|+.++++. + ...|..+..+ +..+.....++.|++||+++++ ... +..+|...+..+.. .+.++|+
T Consensus 606 ~~~~~~~~~~---~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~~~~~lvs~ 678 (793)
T PLN00181 606 NQGVSIGTIK---T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFVDSSTLVSS 678 (793)
T ss_pred CCCcEEEEEe---c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce---EecCCCCCEEEEEEeCCCEEEEE
Confidence 9999998854 2 3456666553 3456777889999999999875 344 56678887776654 3667777
Q ss_pred -ecCeEEEEecC-------CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 339 -RNRTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 339 -sd~tI~iWn~~-------Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.|++|++||++ +.++.+|++|.. .++.+..++++.+|+||+.|. +|.|||..++
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~-----~i~~v~~s~~~~~lasgs~D~----------~v~iw~~~~~ 740 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTN-----VKNFVGLSVSDGYIATGSETN----------EVFVYHKAFP 740 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCC-----CeeEEEEcCCCCEEEEEeCCC----------EEEEEECCCC
Confidence 88999999997 368899999987 788899999999999999997 9999997654
No 4
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.71 E-value=5.1e-16 Score=157.62 Aligned_cols=187 Identities=18% Similarity=0.253 Sum_probs=164.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEe-cCCcEEeEeee
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSI-EDGTVLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I-~tG~~L~t~~~ 275 (411)
-+||+.|++..+++.+++|++.+.+ +++++.++ .|.+++.| ||.+++.... -.=|+||++ ++|..+++
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~---D~tiriwd~~~~~~~~~~--- 241 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD---DKTLRIWDLKDDGRNLKT--- 241 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC---CceEEEeeccCCCeEEEE---
Confidence 4689999999999999999999998 88998755 99999999 8887666543 456899999 77799999
Q ss_pred ccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
+-+|...|..+...+.+.+|.+ .++.++|||+.++++.+ ++-+|...+.+++.+ +++++. .|++|+|||..
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 6699999999999999977766 78999999999999999 888999999999988 778888 69999999999
Q ss_pred -Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 -GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 -Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|. ++..+.+|.. +- -+..+..+|||+.|++++.|. ++++||+.+|+|.
T Consensus 319 ~~~~~~~~~~~~~~~--~~-~~~~~~fsp~~~~ll~~~~d~----------~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAEN--SA-PVTSVQFSPNGKYLLSASLDR----------TLKLWDLRSGKSV 369 (456)
T ss_pred CCceeeeecccCCCC--CC-ceeEEEECCCCcEEEEecCCC----------eEEEEEccCCcce
Confidence 66 4678888888 11 378999999999999999998 9999999999875
No 5
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.70 E-value=2.7e-14 Score=127.87 Aligned_cols=267 Identities=11% Similarity=0.134 Sum_probs=171.8
Q ss_pred eehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcc
Q 015220 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (411)
Q Consensus 107 ii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~L 186 (411)
+++.-...|...+||..|++.+..++... -++++-++.....++++ .. .++ . .+..+. ..|+. ...
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~-~~-~~~--~--v~~~d~---~~~~~---~~~ 68 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVC-AS-DSD--T--IQVIDL---ATGEV---IGT 68 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEE-EC-CCC--e--EEEEEC---CCCcE---EEe
Confidence 44445667889999999999888887532 35777777766554332 21 121 1 222221 11111 000
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
+.. -..|..+-|+....++++.+.+++.+++||+++.+.+..+. +..+..+.++ ||.++++.....+. +.+|+.
T Consensus 69 ~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--~~~~d~ 144 (300)
T TIGR03866 69 LPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNM--AHFIDT 144 (300)
T ss_pred ccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCe--EEEEeC
Confidence 111 12255667765444566677789999999999999988887 3468889999 89888887665432 556899
Q ss_pred cCCcEEeEeeeccccCCcceeeeeeccee-EEee--cCceeeEEEcccceEEE-eeccc------cCCCceEEEEe-ece
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQ--ENENLQILDVRNFELTE-VSRTE------FMTPSAFIFLY-ENQ 333 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ--e~~~LkI~dL~t~e~~~-v~~T~------f~hpsAfifLy-~sq 333 (411)
.+++.+... ... ..+..+..++++. ++.. .+..+.+||+.+++... +.-.. -..|..+.+-. .+.
T Consensus 145 ~~~~~~~~~---~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 145 KTYEIVDNV---LVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred CCCeEEEEE---EcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 999888762 222 3446678887765 3233 47889999999987654 11000 01222222222 224
Q ss_pred eEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 334 LFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|++. .++++.+||.+ |+++..+..+ ..+..+..+|||+.|++++..+ |+|.+||+.+|+++
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~---------~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLLVG------QRVWQLAFTPDEKYLLTTNGVS---------NDVSVIDVAALKVI 284 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEeC------CCcceEEECCCCCEEEEEcCCC---------CeEEEEECCCCcEE
Confidence 57766 67799999999 8877665321 1356889999999998876432 59999999999985
No 6
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.70 E-value=2.1e-17 Score=166.01 Aligned_cols=187 Identities=14% Similarity=0.245 Sum_probs=153.8
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
-+.||| .+++++.-|+|+||||-++++++|.|+++ -|.=.-..+. ++..+ .+-+-+.|||.+||+++++
T Consensus 202 ClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viisG---SSDsTvrvWDv~tge~l~t-- 272 (499)
T KOG0281|consen 202 CLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVSG---SSDSTVRVWDVNTGEPLNT-- 272 (499)
T ss_pred EEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEec---CCCceEEEEeccCCchhhH--
Confidence 355665 56788999999999999999999999998 4444333344 23222 3456789999999999999
Q ss_pred eccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cc
Q 015220 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Ge 351 (411)
++||-.-|=-+...++++.--+.++.|.+||+.+-.-+-.-+-+-+|..|+--+... ++-+|- +|+||++|+.. ||
T Consensus 273 -lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 273 -LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred -HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecccee
Confidence 999999998888888888889999999999998855443445677899999999888 555666 89999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-++++++|+- -..-.-=.|.+++|||.|. ||.+|||+.|+|+
T Consensus 352 fvRtl~gHkR-------GIAClQYr~rlvVSGSSDn----------tIRlwdi~~G~cL 393 (499)
T KOG0281|consen 352 FVRTLNGHKR-------GIACLQYRDRLVVSGSSDN----------TIRLWDIECGACL 393 (499)
T ss_pred eehhhhcccc-------cceehhccCeEEEecCCCc----------eEEEEeccccHHH
Confidence 9999999987 2344456799999999999 9999999999996
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.70 E-value=2.9e-16 Score=158.95 Aligned_cols=194 Identities=17% Similarity=0.178 Sum_probs=162.6
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
+-|-. +|+.|++++.|.|.|+||+.|-+++++.+.| =|+.|..| ||-.||...... .|.+||-++|+.+..
T Consensus 121 ~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg---~I~lwdpktg~~~g~-- 194 (480)
T KOG0271|consen 121 VQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG---SIRLWDPKTGQQIGR-- 194 (480)
T ss_pred EEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC---eEEEecCCCCCcccc--
Confidence 56766 9999999999999999999999999999977 79999999 999988876654 478999999999886
Q ss_pred eccccCCcceeeeeec-----ceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEE
Q 015220 275 HLLHRNKKVDFIEQFN-----EKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVA 344 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~-----ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~ 344 (411)
-|-||+|.|-.|.-.+ +.-++++ +++.++|||+.-|.... ++-+|..++.|+--- .+..|+ .|+||+
T Consensus 195 ~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~---~lsgHT~~VTCvrwGG~gliySgS~DrtIk 271 (480)
T KOG0271|consen 195 ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR---TLSGHTASVTCVRWGGEGLIYSGSQDRTIK 271 (480)
T ss_pred cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE---EeccCccceEEEEEcCCceEEecCCCceEE
Confidence 2679999999887554 3345555 68999999999999888 899999999998744 666677 788888
Q ss_pred EEecC-Cceeeeecccccc--CCCC-------------------------------------------------------
Q 015220 345 VWNFR-GELVTSFEDHLLW--HPDC------------------------------------------------------- 366 (411)
Q Consensus 345 iWn~~-Gel~~s~e~H~~~--~~~c------------------------------------------------------- 366 (411)
+|+-. |-+++.|.||--| |..|
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 88776 7777777777655 3333
Q ss_pred -----------------ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 -----------------NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 -----------------~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+|.|++|||+..|.|+|=|+ +|++||-.|||-+
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk----------SVkLW~g~tGk~l 402 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK----------SVKLWDGRTGKFL 402 (480)
T ss_pred cccccccchhhhhchhhheeeEEECCCccEEEEeeccc----------ceeeeeCCCcchh
Confidence 368899999999999999999 9999999999864
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=1.3e-15 Score=155.16 Aligned_cols=260 Identities=15% Similarity=0.117 Sum_probs=210.2
Q ss_pred ccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeec-CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 015220 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (411)
Q Consensus 104 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~-~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 182 (411)
..++|+--.-+|+|.+++..+.+.+|.|-.-..+|.--.||-. .+.++++.|.- + +.+--.++.|
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D---g--tvklw~~~~e--------- 251 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD---G--TVKLWKLSQE--------- 251 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC---C--ceeeeccCCC---------
Confidence 3577888889999999999999999999999999998899988 57788886542 2 2222222221
Q ss_pred CCcceee-cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 183 GFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 183 ~~~LF~~-~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
.||=+= .-+..=+=|-| -|+|+-|...+-|++-|+||+.+.+++....+| .|..|..- ||-+++++-- -..
T Consensus 252 -~~l~~l~gH~~RVs~Vaf-HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---D~~ 326 (459)
T KOG0272|consen 252 -TPLQDLEGHLARVSRVAF-HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---DSL 326 (459)
T ss_pred -cchhhhhcchhhheeeee-cCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc---cch
Confidence 222110 11122233445 479999999999999999999999988777766 89999888 9998776543 356
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---- 332 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---- 332 (411)
-.||||-||..++. |-||.|||.-++-+|.+..++. +++..|||||+.+...- |.=.|...+.=|-++
T Consensus 327 ~RvWDlRtgr~im~---L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMF---LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred hheeecccCcEEEE---ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCC
Confidence 78999999999999 7899999999999999998886 67899999999977755 777788888776655
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
..++|. -|+|+.+|+.+ +.++.+|-||.. .+=++.||+|++.|+|++.|+ |||+|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-----kV~s~Dis~d~~~i~t~s~DR----------T~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-----KVISLDISPDSQAIATSSFDR----------TIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCcc-----ceEEEEeccCCceEEEeccCc----------eeeecc
Confidence 456666 89999999999 999999999999 999999999999999999999 999995
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.68 E-value=1.8e-16 Score=159.50 Aligned_cols=228 Identities=17% Similarity=0.189 Sum_probs=175.6
Q ss_pred EEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecc-cCCCCeEEeeCCCCeEEEeecCCCeEE
Q 015220 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES-LKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (411)
Q Consensus 140 rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~-l~~PgfvEFDd~NGkiLt~~~~ds~yk 218 (411)
++++-=.+.|..|+ |+|+=+++.+=+-.. +|..-. -.|-|-|=-=+.+.|++++++.|+|++
T Consensus 198 kgVYClQYDD~kiV---------SGlrDnTikiWD~n~--------~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvr 260 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIV---------SGLRDNTIKIWDKNS--------LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVR 260 (499)
T ss_pred CceEEEEecchhhh---------cccccCceEEecccc--------HHHHHhhhcCCCcEEeeeccceEEEecCCCceEE
Confidence 34444445556665 566666665433221 222211 246677755555667999999999999
Q ss_pred EEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe
Q 015220 219 VFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (411)
Q Consensus 219 VWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK 296 (411)
|||.+|.++|-++-++ +|.-+++++|+|+--+ +. =.+.||++-.-..+.----|.||..-|+.+.-..-++.-+
T Consensus 261 vWDv~tge~l~tlihHceaVLhlrf~ng~mvtcS---kD-rsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsA 336 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCS---KD-RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA 336 (499)
T ss_pred EEeccCCchhhHHhhhcceeEEEEEeCCEEEEec---CC-ceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEe
Confidence 9999999999999877 9999999999986432 22 2589999875442221113789999999776666666778
Q ss_pred ecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEE
Q 015220 297 QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (411)
Q Consensus 297 Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I 373 (411)
+++-.||.||.-|+|.++ |+-+|....-||-++ .+-+|+ +|+|||+|+.. |.+++-||||.- -+..|
T Consensus 337 SgDRTikvW~~st~efvR---tl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-----LvRci-- 406 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVR---TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-----LVRCI-- 406 (499)
T ss_pred cCCceEEEEeccceeeeh---hhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-----hhhhe--
Confidence 999999999999999998 999999999999888 677788 99999999999 999999999987 45554
Q ss_pred cCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 374 TSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 374 s~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
-=|.+-|+||--|- +|+|||+-+|.
T Consensus 407 RFd~krIVSGaYDG----------kikvWdl~aal 431 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDG----------KIKVWDLQAAL 431 (499)
T ss_pred eecCceeeeccccc----------eEEEEeccccc
Confidence 44788999998885 99999999874
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.67 E-value=3.7e-15 Score=146.11 Aligned_cols=184 Identities=16% Similarity=0.189 Sum_probs=152.4
Q ss_pred CCeEEEeecCCCeEEEEEeeC-----ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 204 NGKVLTYSAQDSIYKVFDLKN-----YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~-----Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
|-.+|.+..-|+++-+|+|.. ...+..+++| .|+++.+| ||+|.+...-- =-+.+||+++|+....
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD---~~lrlWDl~~g~~t~~--- 100 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD---GTLRLWDLATGESTRR--- 100 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc---ceEEEEEecCCcEEEE---
Confidence 345677777799999999965 3467888875 99999999 99987665443 3589999999988887
Q ss_pred ccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~iWn 347 (411)
+-||.+.|=.++++.+.--| -+.+..|++||....-.+.+ +..++..|+.+|-.+ -++++. .|+|+++||
T Consensus 101 f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~--~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 101 FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI--HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN 178 (315)
T ss_pred EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEE--ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence 66999999999999987644 45789999999999988876 666678999998855 457777 899999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++ =++.++|-||.. ++|++.+||||-+++||.||- .+-+||+..||++
T Consensus 179 l~~~~l~~~~~gh~~-----~v~t~~vSpDGslcasGgkdg----------~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 179 LRNCQLRTTFIGHSG-----YVNTVTVSPDGSLCASGGKDG----------EAMLWDLNEGKNL 227 (315)
T ss_pred cCCcchhhccccccc-----cEEEEEECCCCCEEecCCCCc----------eEEEEEccCCcee
Confidence 99 568889999999 999999999999999999985 6666666666654
No 11
>PTZ00421 coronin; Provisional
Probab=99.66 E-value=1.8e-14 Score=149.40 Aligned_cols=208 Identities=15% Similarity=0.224 Sum_probs=152.6
Q ss_pred hCCCCCCCcceeecccCCCC---eEEeeCCCCeEEEeecCCCeEEEEEeeCc-------eEEEEeccC--ceeEEEEeC-
Q 015220 177 RGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-------TMLYSISDK--NVQEIKISP- 243 (411)
Q Consensus 177 ~gk~~~~~~LF~~~~l~~Pg---fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-------s~iysLs~~--~VqeIkISd- 243 (411)
.|++....|++.. |-| -+.|+..|+..|++++.|++++|||+.+. +++..+.++ .|..+..++
T Consensus 61 ~G~~~~~~~~l~G----H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 61 YGKLASNPPILLG----QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred cccCCCCCceEeC----CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC
Confidence 4555555556542 333 46788778889999999999999999864 367778765 799999994
Q ss_pred -CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeecccc
Q 015220 244 -GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEF 320 (411)
Q Consensus 244 -G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f 320 (411)
+.+|+.... ---|+|||+++|+.+.+ +-+|...|..+..++++-++ ...+..|+|||+++++... +..
T Consensus 137 ~~~iLaSgs~---DgtVrIWDl~tg~~~~~---l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~ 207 (493)
T PTZ00421 137 AMNVLASAGA---DMVVNVWDVERGKAVEV---IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVE 207 (493)
T ss_pred CCCEEEEEeC---CCEEEEEECCCCeEEEE---EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEe
Confidence 356666543 23489999999999888 55788999999998877544 4577899999999998776 566
Q ss_pred CCCce----EEEEeeceeEEEE-----ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 321 MTPSA----FIFLYENQLFLTF-----RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 321 ~hpsA----fifLy~sqlFlSf-----sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
+|..+ .++......+++. +|++|++||++ ..++.+.+.|.. +.+...+.++|+.+++++++.+
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~----~~~~~~~~d~d~~~L~lggkgD-- 281 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS----SALFIPFFDEDTNLLYIGSKGE-- 281 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC----CceEEEEEcCCCCEEEEEEeCC--
Confidence 66543 3333333445543 37899999998 446665553332 4566678899999999998733
Q ss_pred CccccCCceEEEeeecceeee
Q 015220 390 DPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+|++||+.+|+++
T Consensus 282 -------g~Iriwdl~~~~~~ 295 (493)
T PTZ00421 282 -------GNIRCFELMNERLT 295 (493)
T ss_pred -------CeEEEEEeeCCceE
Confidence 49999999999864
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.1e-14 Score=147.98 Aligned_cols=188 Identities=16% Similarity=0.234 Sum_probs=153.3
Q ss_pred CCCCeEEEeecCCCeEEEEEe-eCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDL-KNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL-~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
-++|+.++..+.|.++||||+ .++.++++|.++ .|..+.++ +|.+++...--+ -++||++.+|+++.. |-
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~---tvriWd~~~~~~~~~---l~ 285 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG---TVRIWDVRTGECVRK---LK 285 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC---cEEEEeccCCeEEEe---ee
Confidence 367889999999999999999 778999999988 88888888 888777766554 489999999999999 77
Q ss_pred ccCCcceeeeeecceeEEee--cCceeeEEEcccceEE---EeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEec
Q 015220 278 HRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELT---EVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNF 348 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~---~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~ 348 (411)
+|+.+|-.+...++..+|.. .+..|+|||+.+++.. ++.....-. .+.++..+ ..+++. -|+++++||+
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA--PVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC--ceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 99999999999999885554 5789999999999953 343343311 24454443 556666 7779999999
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+ |..+.++.+|..- ..|-...+. +++|.+|+||+.|. +|.+||+.||..
T Consensus 364 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~sg~~d~----------~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 364 RSGKSVGTYTGHSNL-VRCIFSPTL-STGGKLIYSGSEDG----------SVYVWDSSSGGI 413 (456)
T ss_pred cCCcceeeecccCCc-ceeEecccc-cCCCCeEEEEeCCc----------eEEEEeCCccch
Confidence 9 9999999999985 245444444 99999999999998 999999999764
No 13
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.65 E-value=1.7e-14 Score=151.48 Aligned_cols=260 Identities=16% Similarity=0.162 Sum_probs=197.4
Q ss_pred cceehhhhccccceeeecccccEEEE-EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICF-LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~-lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
.+.++.-+....=..||..+++.+-. +. ++..-|.++.|....+-||+.|.= +++.+-+..-|+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~-GH~g~V~~l~~~~~~~~lvsgS~D----------~t~rvWd~~sg~---- 282 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLV-GHFGGVWGLAFPSGGDKLVSGSTD----------KTERVWDCSTGE---- 282 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeecc-CCCCCceeEEEecCCCEEEEEecC----------CcEEeEecCCCc----
Confidence 34555555556657888887775544 43 666778999999888888887732 122222222222
Q ss_pred Ccceeeccc-CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeE
Q 015220 184 FALFESESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLK 260 (411)
Q Consensus 184 ~~LF~~~~l-~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiK 260 (411)
++-++ .|++-|-=.+..+..++++.-|.++|||+.++.+.+..+.++ .|.+|.+..+.++...+-- .||
T Consensus 283 ----C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~----~v~ 354 (537)
T KOG0274|consen 283 ----CTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDG----TVK 354 (537)
T ss_pred ----EEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCc----eEE
Confidence 12222 366666666666667777889999999999999999999944 8999999866654443322 899
Q ss_pred EEEecCCcEEeEeeeccccCCcceeeeeec-ceeEEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec-eeEEE
Q 015220 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN-QLFLT 337 (411)
Q Consensus 261 Il~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s-qlFlS 337 (411)
||++.+|+++++ |-||.-.|+-+..-+ +.++=-+-+..||+||+.+. +++. |+.+|++-+.-+.-. +.+++
T Consensus 355 VW~~~~~~cl~s---l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~~~~Lvs 428 (537)
T KOG0274|consen 355 VWDPRTGKCLKS---LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLRDNFLVS 428 (537)
T ss_pred EEEhhhceeeee---ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhh---hhcCCcccccccccccceeEe
Confidence 999999999999 889999999998877 66677778899999999999 8887 999999888665554 67777
Q ss_pred E-ecCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 F-RNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 f-sd~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. .|++|++||.. |+.++++++ |.. .+-.+... .+.+++++.+. ++++||+.+|++.
T Consensus 429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~-----~v~~l~~~--~~~il~s~~~~----------~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGECLRTLEGRHVG-----GVSALALG--KEEILCSSDDG----------SVKLWDLRSGTLI 487 (537)
T ss_pred ccccccEEEeecccCceeeeeccCCcc-----cEEEeecC--cceEEEEecCC----------eeEEEecccCchh
Confidence 7 99999999999 999999999 555 55555544 68888888886 9999999999975
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=3.9e-15 Score=149.70 Aligned_cols=185 Identities=17% Similarity=0.271 Sum_probs=153.0
Q ss_pred CeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 205 GKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
||.|+.+++|=..+.||+.+ |+++.++.++ .|+.+.+= -|-.++.-...+.. |.|+++||-.+++ +-+|+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti---k~We~~tg~cv~t---~~~h~ 235 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI---KAWECDTGYCVKT---FPGHS 235 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce---eEEecccceeEEe---ccCch
Confidence 49999999998899999999 8899988855 89999988 56555555554443 9999999999999 67999
Q ss_pred CcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEe-----------ec-----eeEEEE-ecC
Q 015220 281 KKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-----------EN-----QLFLTF-RNR 341 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-----------~s-----qlFlSf-sd~ 341 (411)
.=|..+.+..|+.++++ .+..|.+|=+.+++...+- +.-.||-..+..+ .. |.+.++ +|+
T Consensus 236 ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 236 EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99999999999999998 5568999999998443321 1122443333322 11 688888 999
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeeeC
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI 411 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~~ 411 (411)
||++||.. |..+-||-+|..| +..++|+|-|++|+|...|+ |+++||+.++.|.+
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaDDk----------tlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNW-----VRGVAFSPGGKYILSCADDK----------TLRVWDLKNLQCMK 370 (406)
T ss_pred eEEEEeccCCeEEEEEecccce-----eeeeEEcCCCeEEEEEecCC----------cEEEEEeccceeee
Confidence 99999999 9999999999996 88999999999999999998 99999999999964
No 15
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.62 E-value=1.9e-14 Score=151.08 Aligned_cols=185 Identities=15% Similarity=0.212 Sum_probs=154.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
++|+. -+..|+++.-|.+.||||+.++++..+|-.+ -|+.+.+-+-..+- ..----+|||++++|+.+++
T Consensus 255 l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~s----gs~D~tVkVW~v~n~~~l~l--- 326 (537)
T KOG0274|consen 255 LAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVS----GSRDNTVKVWDVTNGACLNL--- 326 (537)
T ss_pred EEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEee----ccCCceEEEEeccCcceEEE---
Confidence 46666 5778888999999999999999999999966 56666665555332 11112489999999999998
Q ss_pred ccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecC-C-
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-G- 350 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-G- 350 (411)
+=+|.-+|..+....+.++--+.+..+++||..+++... ++-+|.-++..|+.. +..+++ -|++|++||++ +
T Consensus 327 ~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~---sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 327 LRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLK---SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred eccccccEEEEEecCCEEEEEecCceEEEEEhhhceeee---eecCCcceEEEEEecCcceEEeeeeccceEeecCCchh
Confidence 334999999999998888888888899999999999998 999999999997654 578888 89999999999 6
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..+-+|.+|.. .++ -+...+.+|+|+++|. +|++||+++|+|+
T Consensus 404 ~c~~tl~~h~~-----~v~--~l~~~~~~Lvs~~aD~----------~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 404 KCIHTLQGHTS-----LVS--SLLLRDNFLVSSSADG----------TIKLWDAEEGECL 446 (537)
T ss_pred hhhhhhcCCcc-----ccc--ccccccceeEeccccc----------cEEEeecccCcee
Confidence 68889999999 442 2456789999999997 9999999999996
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.62 E-value=3e-15 Score=152.45 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=172.0
Q ss_pred CCeEEeeCC-CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 195 PGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 195 PgfvEFDd~-NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
-|=++|-++ +++.+++++.|++.|+|++.+-++|..|++| +|..|+.- +|.||++..--+ .-.|||++|++.+
T Consensus 220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~---tWRlWD~~tk~El 296 (459)
T KOG0272|consen 220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS---TWRLWDLETKSEL 296 (459)
T ss_pred eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc---chhhcccccchhh
Confidence 455677777 7999999999999999999999999999988 89999999 999999876554 4689999999998
Q ss_pred eEeeeccccCCcceeeeeecceeEEeecCc--eeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe~~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
.- .=||+|+|.-+.-..|+=|+..+|. -=+|||++||..+- .+-+|...++.++.+ ..++|+ +|+|++
T Consensus 297 L~---QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 297 LL---QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred Hh---hcccccccceeEecCCCceeeccCccchhheeecccCcEEE---EecccccceeeEeECCCceEEeecCCCCcEE
Confidence 86 6699999999999999999999865 56899999999998 788899999999988 778899 999999
Q ss_pred EEecCC-ceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFRG-ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~G-el~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|||+++ ..+-+.-.|.. .+..|--+| -|.+|++++-|. |+|||.-.++.|+
T Consensus 371 VWDLR~r~~ly~ipAH~n-----lVS~Vk~~p~~g~fL~TasyD~----------t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSN-----LVSQVKYSPQEGYFLVTASYDN----------TVKIWSTRTWSPL 423 (459)
T ss_pred Eeeecccccceecccccc-----hhhheEecccCCeEEEEcccCc----------ceeeecCCCcccc
Confidence 999994 46779999999 888888887 899999999998 9999999988764
No 17
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.57 E-value=2.5e-12 Score=137.87 Aligned_cols=189 Identities=11% Similarity=0.143 Sum_probs=144.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCc-EEeEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGT-VLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~-~L~t~ 273 (411)
+.|...+|..|++++.|++++|||+++.+.+.++..+ .|..+..+ +|.+|++....+ .|++|++.+++ .+.+
T Consensus 581 l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg---~I~iwD~~~~~~~~~~- 656 (793)
T PLN00181 581 IDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADH---KVYYYDLRNPKLPLCT- 656 (793)
T ss_pred EEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEECCCCCccceE-
Confidence 5788889999999999999999999999999888755 78888875 688888876554 68999999886 4555
Q ss_pred eeccccCCcceeeeeecce-eEEeecCceeeEEEcccc------eEEEeeccccCCCceEEEEeec---eeEEEE-ecCe
Q 015220 274 NHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNF------ELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRT 342 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ek-llIKQe~~~LkI~dL~t~------e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~t 342 (411)
+.+|++.|..+...++. ++..+.+..|+|||+.++ +... +..+|.....++..+ ++++++ .|++
T Consensus 657 --~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~---~~~gh~~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 657 --MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLH---SFMGHTNVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred --ecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceE---EEcCCCCCeeEEEEcCCCCEEEEEeCCCE
Confidence 56899999888776544 456678899999999864 3333 555677665555544 788888 7999
Q ss_pred EEEEecC-Cceeeeecc--c------cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 343 VAVWNFR-GELVTSFED--H------LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~--H------~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|.+|+.. +.++.++.- . ...+....++.+..++||..+++|+.|. +|+|||+.
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG----------~I~i~~~~ 793 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG----------NIKILEMV 793 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC----------cEEEEecC
Confidence 9999987 555443321 1 1111234689999999999999999886 99999973
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=2.5e-14 Score=143.95 Aligned_cols=186 Identities=15% Similarity=0.219 Sum_probs=148.2
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC-CcEEeEeeeccccCC
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNK 281 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t-G~~L~t~~~LL~h~K 281 (411)
-+.+....|.++||||+.||++..+|.++ -|++|.++ -|-.|+.-. .-+++|+|+.++ -+.+++ ++||.-
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcS---sDl~~~LWd~~~~~~c~ks---~~gh~h 194 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCS---SDLSAKLWDFDTFFRCIKS---LIGHEH 194 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecC---CccchhheeHHHHHHHHHH---hcCccc
Confidence 35666668999999999999999999877 79999999 776655533 345599999998 667777 788877
Q ss_pred cceeeee--ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceee
Q 015220 282 KVDFIEQ--FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVT 354 (411)
Q Consensus 282 ~I~FLE~--~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~ 354 (411)
-|+.+.+ .+++++=.+.++.||+|++.+|.... |.-+||+|+--+..+ .|+.|. -|.++++|-+. ++-+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~---t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK---TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEE---eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 7775544 46777888899999999999999999 999999999999988 678888 77899999999 87677
Q ss_pred eeccccc------cCCCCccceEE-EcC---CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLL------WHPDCNTNNIY-ITS---DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~------~~~~c~~n~i~-Is~---Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|.+|.- |+|+-.--+|. -++ .|+++.|+|-|+ ||||||+.||+|+
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk----------tIk~wdv~tg~cL 327 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK----------TIKIWDVSTGMCL 327 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc----------eEEEEeccCCeEE
Confidence 7788864 44443321111 011 347999999999 9999999999997
No 19
>PTZ00420 coronin; Provisional
Probab=99.52 E-value=1.7e-12 Score=137.31 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=137.1
Q ss_pred ecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeEEEEecCCcE-Ee----EeeeccccCC
Q 015220 211 SAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTV-LK----SFNHLLHRNK 281 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiKIl~I~tG~~-L~----t~~~LL~h~K 281 (411)
++..+.+++|++..-.++..+.++ .|..+..+| +.+||....-. -|+||++.++.. .. ....+-+|+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCCccccccccceEEeecCCC
Confidence 445789999999888889999876 899999994 67787775433 579999997632 11 1223668999
Q ss_pred cceeeeeeccee-EE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 282 KVDFIEQFNEKL-LV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 282 ~I~FLE~~~ekl-lI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
+|..++.+++.. ++ .+.++.|+|||+.+++... +. .|+..+..+..+ .++++. .|++|+|||++ |+++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF---QI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE---EE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999999998653 33 4678999999999998654 22 356667777655 677766 69999999999 9999
Q ss_pred eeeccccccCCCCccceEE---EcCCCCEEEEEecCCCCCccccCCceEEEeeecc-eee
Q 015220 354 TSFEDHLLWHPDCNTNNIY---ITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF-VTC 409 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~---Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t-Gk~ 409 (411)
.++.+|.+- .....++ +++|++.|+|++.|+ ...++|+|||+.+ +++
T Consensus 203 ~tl~gH~g~---~~s~~v~~~~fs~d~~~IlTtG~d~------~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 203 SSFHIHDGG---KNTKNIWIDGLGGDDNYILSTGFSK------NNMREMKLWDLKNTTSA 253 (568)
T ss_pred EEEecccCC---ceeEEEEeeeEcCCCCEEEEEEcCC------CCccEEEEEECCCCCCc
Confidence 999999872 1112222 368999999999886 2335899999984 554
No 20
>PTZ00420 coronin; Provisional
Probab=99.50 E-value=3.1e-12 Score=135.43 Aligned_cols=190 Identities=11% Similarity=0.101 Sum_probs=135.2
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc--------eEEEEeccC--ceeEEEEe-CCEEE-EEEecCCCceeeEEEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY--------TMLYSISDK--NVQEIKIS-PGIML-LIFTKASGHVPLKILSI 264 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y--------s~iysLs~~--~VqeIkIS-dG~~L-ai~q~t~~~ipiKIl~I 264 (411)
-+.|..-++..|++++.|++++|||+.+. +++..+.++ .|..+..+ ++..+ +.... . --|+|||+
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~-D--gtIrIWDl 155 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF-D--SFVNIWDI 155 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC-C--CeEEEEEC
Confidence 35676667889999999999999999863 244556654 79999999 45544 44332 2 35899999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceE----EEE----eecee
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAF----IFL----YENQL 334 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAf----ifL----y~sql 334 (411)
.+|+.+.++ .+..+|..+..++++-++. ..+..|+|||+++++... +.-+|.... +++ ...+.
T Consensus 156 ~tg~~~~~i----~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~ 228 (568)
T PTZ00420 156 ENEKRAFQI----NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNY 228 (568)
T ss_pred CCCcEEEEE----ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCE
Confidence 999988773 3457899999988776555 357899999999998876 555665432 222 23355
Q ss_pred EEE-Eec----CeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 335 FLT-FRN----RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 335 FlS-fsd----~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
++| +.| ++|+|||++ ++++.++..+..-. .....|=+++|.++++|+-|. +|.+|++.+|
T Consensus 229 IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~---~L~p~~D~~tg~l~lsGkGD~----------tIr~~e~~~~ 295 (568)
T PTZ00420 229 ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA---PLIPHYDESTGLIYLIGKGDG----------NCRYYQHSLG 295 (568)
T ss_pred EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc---ceEEeeeCCCCCEEEEEECCC----------eEEEEEccCC
Confidence 665 444 489999999 67777664433210 222334467799999999987 9999999888
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
.+
T Consensus 296 ~~ 297 (568)
T PTZ00420 296 SI 297 (568)
T ss_pred cE
Confidence 64
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.48 E-value=5.2e-13 Score=134.89 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=166.9
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
.-|.|=--|.+|..| .-++.++.|.++|||||.+.++..+|+++ .|-++++|+-+=.+++-..... +|-|||++-
T Consensus 149 gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~--VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ--VKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe--eEEEechhh
Confidence 455666677899985 56777889999999999999999999977 9999999988877777766665 699999999
Q ss_pred cEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR 341 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~ 341 (411)
++++. --||-.-|+.|.++ .+-|+-...+..+++||++++...- ++-+|...+--|.-+ ---+|+ .|.
T Consensus 226 kvIR~---YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 226 KVIRH---YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hhHHH---hccccceeEEEeccccceeEEecCCcceEEEeeecccceEE---EecCCCCcceeEEeecCCCceEEecCCc
Confidence 99998 78999999999999 6667777889999999999999998 788888887776655 334566 999
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
||++||++ |.-..++.-|.- .+..+.+-|+.-+..|+|+|. |+=|++--|+
T Consensus 300 tvrlWDl~agkt~~tlt~hkk-----svral~lhP~e~~fASas~dn-----------ik~w~~p~g~ 351 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKK-----SVRALCLHPKENLFASASPDN-----------IKQWKLPEGE 351 (460)
T ss_pred eEEEeeeccCceeEeeecccc-----eeeEEecCCchhhhhccCCcc-----------ceeccCCccc
Confidence 99999999 999999999999 899999999999999999995 6667665554
No 22
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=7.8e-13 Score=134.39 Aligned_cols=183 Identities=17% Similarity=0.231 Sum_probs=153.4
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+..+-|++++-|++.+|||.+-.++++.|++| -|.-|+-. +|.| +...+. =-||+|...+|++.++ |-||
T Consensus 215 p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli---ySgS~D-rtIkvw~a~dG~~~r~---lkGH 287 (480)
T KOG0271|consen 215 PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI---YSGSQD-RTIKVWRALDGKLCRE---LKGH 287 (480)
T ss_pred CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE---EecCCC-ceEEEEEccchhHHHh---hccc
Confidence 45678999999999999999999999999999 67777776 5653 233332 2589999999999999 7788
Q ss_pred CCcceeeeeec--------------------------------------ceeEEeecCceeeEEEcccce-EEEeecccc
Q 015220 280 NKKVDFIEQFN--------------------------------------EKLLVKQENENLQILDVRNFE-LTEVSRTEF 320 (411)
Q Consensus 280 ~K~I~FLE~~~--------------------------------------ekllIKQe~~~LkI~dL~t~e-~~~v~~T~f 320 (411)
..-|+-|+.+- |-+.=.+.+..+-+||=...+ ++. -..
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~---rmt 364 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT---RMT 364 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh---hhh
Confidence 88888888872 335666778888999866544 554 456
Q ss_pred CCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccC
Q 015220 321 MTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (411)
Q Consensus 321 ~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~ 395 (411)
+|...+.-++.| .+-+|. =|++|++|+-+ |.-+++|-||.. .+..|+-|.|-.||+|||||.
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-----~VYqvawsaDsRLlVS~SkDs-------- 431 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-----AVYQVAWSADSRLLVSGSKDS-------- 431 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-----eeEEEEeccCccEEEEcCCCc--------
Confidence 799999999999 556666 69999999999 999999999999 999999999999999999999
Q ss_pred CceEEEeeecceeee
Q 015220 396 NGKLFVSLLMFVTCK 410 (411)
Q Consensus 396 ~gtI~i~~i~tGk~~ 410 (411)
|+||||+.|-|+.
T Consensus 432 --TLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 432 --TLKVWDVRTKKLK 444 (480)
T ss_pred --eEEEEEeeeeeec
Confidence 9999999999874
No 23
>PTZ00421 coronin; Provisional
Probab=99.44 E-value=1.8e-11 Score=127.20 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=121.1
Q ss_pred ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEE----eEeeeccccCCcceeeeeecce--e-EEeecCceeeEE
Q 015220 235 NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFIEQFNEK--L-LVKQENENLQIL 305 (411)
Q Consensus 235 ~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L----~t~~~LL~h~K~I~FLE~~~ek--l-lIKQe~~~LkI~ 305 (411)
.|..+..+ |+..|++..... -|+||++.++... .....+-+|+++|..++.+++. + +-...+..|+||
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~Dg---tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDG---TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCC---EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 89999999 477777665433 5899999987431 1122377999999999999863 3 345678999999
Q ss_pred EcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 306 DVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 306 dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
|+.+++... +.-.|+..+..+..+ .+++|. .|++|+|||++ |+.+.++.+|... ....+.-.++++.|
T Consensus 154 Dl~tg~~~~---~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~i 226 (493)
T PTZ00421 154 DVERGKAVE---VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLI 226 (493)
T ss_pred ECCCCeEEE---EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeE
Confidence 999998876 666788888888765 678888 89999999999 9999999999762 23456667888999
Q ss_pred EEEecCCCCCccccCCceEEEeeeccee
Q 015220 381 ISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++.+.++ ...|+|++||+.+.+
T Consensus 227 vt~G~s~------s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 227 ITLGCSK------SQQRQIMLWDTRKMA 248 (493)
T ss_pred EEEecCC------CCCCeEEEEeCCCCC
Confidence 8876554 223699999997654
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.42 E-value=4e-12 Score=136.35 Aligned_cols=183 Identities=13% Similarity=0.203 Sum_probs=160.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.|+-+-|++|++|++.|.|+|.+.+++..-+++ -|=.+.++ -|...|+. .|.+.- .+|+-..-++++- +.|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFata--s~D~tA-rLWs~d~~~PlRi---fag 533 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATA--SHDQTA-RLWSTDHNKPLRI---FAG 533 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEec--CCCcee-eeeecccCCchhh---hcc
Confidence 567789999999999999999999998777777 56777788 78888877 444443 9999999888887 679
Q ss_pred cCCcceeeeeecceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge 351 (411)
|..+|+.+..||..-+++-+ ++..++||+.+|...++= -+|..-+++|+.+ ..+.|+ .|+.|.+||+. |.
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 99999999999999988864 678999999999998843 4699999999999 567777 99999999999 89
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++..|-+|.+ .++++-+|.||-+|+||+.|. ++.+||+..-.
T Consensus 611 ~v~~l~~Ht~-----ti~SlsFS~dg~vLasgg~Dn----------sV~lWD~~~~~ 652 (707)
T KOG0263|consen 611 LVKQLKGHTG-----TIYSLSFSRDGNVLASGGADN----------SVRLWDLTKVI 652 (707)
T ss_pred chhhhhcccC-----ceeEEEEecCCCEEEecCCCC----------eEEEEEchhhc
Confidence 9999999988 999999999999999999999 99999987543
No 25
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=4e-11 Score=129.15 Aligned_cols=272 Identities=18% Similarity=0.259 Sum_probs=199.3
Q ss_pred ccccccccceEEEeeccceehhhhcccc-ceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeee
Q 015220 89 LPFLRKRSKIIEIVAARDIVFALAQSGV-CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (411)
Q Consensus 89 l~~l~~RS~V~EIv~a~dii~~L~~sG~-c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~c 167 (411)
+.++--|+.|.-+-...|=++.++-+|= --.|++.|.+ |..-...+ .|.+-++=. +|.+|+ ..+.+-...-.-|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k--ciRTi~~~-y~l~~~Fvp-gd~~Iv-~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK--CIRTITCG-YILASKFVP-GDRYIV-LGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc--eeEEeccc-cEEEEEecC-CCceEE-EeccCCceEEEEe
Confidence 3345578888888777777776665543 3456666666 44333333 333333333 244443 3555555455667
Q ss_pred Eeee-hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce-------EEEEec-------
Q 015220 168 RSTR-IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS------- 232 (411)
Q Consensus 168 r~~~-~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-------~iysLs------- 232 (411)
.+.+ +|-|++ +.| .+. +-++ -++++=.+-.+.|+++|+||++-.. ...+|.
T Consensus 442 aS~~l~Eti~A---Hdg-aIW-si~~---------~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel 507 (888)
T KOG0306|consen 442 ASASLVETIRA---HDG-AIW-SISL---------SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL 507 (888)
T ss_pred ehhhhhhhhhc---ccc-cee-eeee---------cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence 7776 555552 111 111 1111 2455666667899999999987432 223333
Q ss_pred cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEccc
Q 015220 233 DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRN 309 (411)
Q Consensus 233 ~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t 309 (411)
.++|..+++| ||-+||++.=.+ -+||+-+.|=+-.-+ |-||+-||-.|.+++|.=+|. +.+.++|||-|.=
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKFfls---LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKFFLS---LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccC---eEEEEEecceeeeee---ecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence 3589999999 999999987654 478999998777777 999999999999999876554 4789999999999
Q ss_pred ceEEEeeccccCCCce---EEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 310 FELTEVSRTEFMTPSA---FIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsA---fifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
|++.+ ..|+|-.+ +-|+..+++|+|- +|++|+=||=. =+.+.+|.+|.. ++-.++++|+|++.||+|
T Consensus 582 GDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-----ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 582 GDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-----EVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred chhhh---hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-----eeeeeEEcCCCCeEEecc
Confidence 99999 99998877 5566777888887 99999999987 789999999999 999999999999999999
Q ss_pred cCCCCCccccCCceEEEee
Q 015220 385 KADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 385 ~d~~~~~~~~~~gtI~i~~ 403 (411)
-|+ +|.+|.
T Consensus 654 hD~----------sIRlwE 662 (888)
T KOG0306|consen 654 HDK----------SIRLWE 662 (888)
T ss_pred CCc----------eeEeee
Confidence 999 999996
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.37 E-value=5.6e-10 Score=100.12 Aligned_cols=199 Identities=14% Similarity=0.197 Sum_probs=134.5
Q ss_pred CCeEEeeCCCCeE-EEeecCCCeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 195 PGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 195 PgfvEFDd~NGki-Lt~~~~ds~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
|..+-|+. +|+. ++....++.+++||+.+.+.+.++.. ..+..+.++ +|..|++.....+ .+++|++++++.+.
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~--~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDN--LVTVIDIETRKVLA 109 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCC--eEEEEECCCCeEEe
Confidence 55577864 5654 46677899999999999998877763 467778888 7777766654333 69999999999888
Q ss_pred EeeeccccCCcceeeeeecceeE--EeecC-ceeeEEEcccceEEEeeccccCCCceEEEEeece-eEEEE-ecCeEEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKLL--VKQEN-ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTF-RNRTVAVW 346 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekll--IKQe~-~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq-lFlSf-sd~tI~iW 346 (411)
.+.. ...+.-+..++++.+ +..++ ..+..||+.+++...... .-..|..+.|-...+ ++++. .+++|.+|
T Consensus 110 ~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 110 EIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred EeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 7542 234566788877653 33443 346778999988765211 112454444433334 44565 58999999
Q ss_pred ecC-Cceeeeeccccc-cCCCCc-cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELVTSFEDHLL-WHPDCN-TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~-~~~~c~-~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+. |+.++++..+.. .++.+. -..+.++|||+.++..+.++ ++|.+||+.+|+++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---------~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---------NRVAVVDAKTYEVL 242 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC---------CeEEEEECCCCcEE
Confidence 999 888887765532 122222 22577899999876654332 38999999999864
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.36 E-value=1.1e-11 Score=125.42 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=139.8
Q ss_pred CceEEEEeccC--ceeEEEEeCC-EEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec--ceeEEeec
Q 015220 224 NYTMLYSISDK--NVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQE 298 (411)
Q Consensus 224 ~Ys~iysLs~~--~VqeIkISdG-~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe 298 (411)
+|++-..|+.+ =|..+.+-|| .+++.+..- --||||||.||++.-+ |-||..-+.=+++++ -|++-.-+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~D---rtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSAD---RTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCC---ceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecC
Confidence 57777888877 6888999854 444444322 3489999999999999 778888888888775 47788889
Q ss_pred CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEE
Q 015220 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (411)
Q Consensus 299 ~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I 373 (411)
+.-+|+|||..++.++ .+.+|=+++.+|+.- ..++|+ +|-++||||.| -..|-.|.||.+ -+..|.-
T Consensus 214 dk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-----~V~~V~~ 285 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-----PVASVMC 285 (460)
T ss_pred CCeeEEEechhhhhHH---HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-----cceeEEe
Confidence 9999999999999998 999999999999866 667777 99999999999 789999999999 8999999
Q ss_pred cCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 374 TSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 374 s~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|..--||+||-|. ||.+||+..||-.
T Consensus 286 ~~~dpqvit~S~D~----------tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 286 QPTDPQVITGSHDS----------TVRLWDLRAGKTM 312 (460)
T ss_pred ecCCCceEEecCCc----------eEEEeeeccCcee
Confidence 98888899999998 9999999999854
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=5.2e-11 Score=127.85 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=192.4
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEe----eehhhhhhCCCC
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS----TRIEYIRRGKPD 181 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~----~~~~~i~~gk~~ 181 (411)
+.+++-+.|+--+.|+.-|-. |.|=++++|+|-||---.-++-|++.| +|. |-.==|- ...-++..+--.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~--c~ii~GH~e~vlSL~~~~~g~llat~s---KD~-svilWr~~~~~~~~~~~a~~~gH 410 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSY--CQIIPGHTEAVLSLDVWSSGDLLATGS---KDK-SVILWRLNNNCSKSLCVAQANGH 410 (775)
T ss_pred ceEEEEeCCCceEEEecCCCc--eEEEeCchhheeeeeecccCcEEEEec---CCc-eEEEEEecCCcchhhhhhhhccc
Confidence 677888899999999766554 999999999999998555455555543 333 2111111 000011111110
Q ss_pred CCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCce---EEEEe--------ccCceeEEEEe-CCEEEEE
Q 015220 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSI--------SDKNVQEIKIS-PGIMLLI 249 (411)
Q Consensus 182 ~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys---~iysL--------s~~~VqeIkIS-dG~~Lai 249 (411)
. ..=|=|-+.-.-.-.+++.++|.++|+|+|...+ +.+.+ -|++|-.+.|+ +.-++|+
T Consensus 411 ~----------~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 411 T----------NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred c----------cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 1 1112233333333457888999999999998832 22233 26699999999 7777888
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
...-+. .|||++++++++++ |-||++-|=.++-.+--+ .=.+++..+|||.+.+.+..+ |.-+|.+|+.
T Consensus 481 ~SqDkt---aKiW~le~~~l~~v---LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk---T~eGH~~aVl 551 (775)
T KOG0319|consen 481 GSQDKT---AKIWDLEQLRLLGV---LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK---TFEGHTSAVL 551 (775)
T ss_pred cccccc---eeeecccCceEEEE---eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee---eecCccceeE
Confidence 877764 79999999999999 889999999998887744 556799999999999999999 9999999986
Q ss_pred ---EEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 ---FLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 ---fLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
|+..-+-|+|. +||.|.+||.. +|=++|+..|-. -+=.+..+++.+.+++|..|. .|..|
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D-----rvWaL~~~~~~~~~~tgg~Dg----------~i~~w 616 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND-----RVWALSVSPLLDMFVTGGGDG----------RIIFW 616 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc-----eeEEEeecCccceeEecCCCe----------EEEEe
Confidence 44444556666 99999999999 999999999988 788899999999999999986 99998
Q ss_pred ee
Q 015220 403 LL 404 (411)
Q Consensus 403 ~i 404 (411)
.=
T Consensus 617 kD 618 (775)
T KOG0319|consen 617 KD 618 (775)
T ss_pred ec
Confidence 53
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.34 E-value=6.2e-11 Score=127.29 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=177.7
Q ss_pred eecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecC---CCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC
Q 015220 120 FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD---NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG 196 (411)
Q Consensus 120 f~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd---~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg 196 (411)
||-.+.+..--|=..+|||--.=|.++..+-|.+++--... +++.+.|. |.+|-.+ .+-
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~GH~e---------~vl--- 369 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------IIPGHTE---------AVL--- 369 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------EEeCchh---------hee---
Confidence 34444554445556788888888999887777775522110 23333343 3333321 111
Q ss_pred eEEee-CCCCeEEEeecCCCeEEEEEeeCce----EEEEeccC--ceeEEEEe---CCEEEEEEecCCCceeeEEEEecC
Q 015220 197 FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISDK--NVQEIKIS---PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 197 fvEFD-d~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
-.| --.|--|++++-|++.++|.|.+-. ++...+.+ .|-.|.+| ...|+.++ +---||+|+|..
T Consensus 370 --SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS----~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 370 --SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS----QDCTLKLWDLPK 443 (775)
T ss_pred --eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec----CCceEEEecCCC
Confidence 122 2345788999999999999995533 33444544 78888888 23333332 235699999998
Q ss_pred CcEEeEeee------ccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeE
Q 015220 267 GTVLKSFNH------LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLF 335 (411)
Q Consensus 267 G~~L~t~~~------LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlF 335 (411)
.+....-.. -..|-|+|+.+++.++.=||+- .+.+-||||+-..+..- |+-+|...+-++-.+ |++
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~---vLsGH~RGvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG---VLSGHTRGVWCVSFSKNDQLL 520 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE---EeeCCccceEEEEecccccee
Confidence 655543222 2578999999999999988875 67899999999777776 999999999888766 889
Q ss_pred EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 336 LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 336 lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|- .|.||+||+.. ++-+.|||||-. .+=.+..=.+|..|||+++|- -||||||+|++|+
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~-----aVlra~F~~~~~qliS~~adG----------liKlWnikt~eC~ 582 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTS-----AVLRASFIRNGKQLISAGADG----------LIKLWNIKTNECE 582 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccc-----eeEeeeeeeCCcEEEeccCCC----------cEEEEeccchhhh
Confidence 999 89999999999 999999999987 444444445677889999985 9999999999996
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.27 E-value=1.6e-10 Score=113.00 Aligned_cols=183 Identities=10% Similarity=0.145 Sum_probs=138.0
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE--EeEeeeccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV--LKSFNHLLH 278 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~--L~t~~~LL~ 278 (411)
.-.+|++.+-|.|+|+|-..+..+.++|.+. +|-...|+ |+.+||..-..| |.|+||.++.+ +.+ .-+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh----vRlyD~~S~np~Pv~t---~e~ 81 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH----VRLYDLNSNNPNPVAT---FEG 81 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe----eEEEEccCCCCCceeE---Eec
Confidence 6789999999999999999999999999977 55555555 999998877665 67889999886 555 458
Q ss_pred cCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee--cee-EEEE-ecCeEEEEecCCc-
Q 015220 279 RNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE--NQL-FLTF-RNRTVAVWNFRGE- 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~--sql-FlSf-sd~tI~iWn~~Ge- 351 (411)
|+|.|-.+--.-++. +--+|+...|||||++-+.. -+|-|++.+-.+-. +|- ++++ +++-|+|||+.-+
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 889999888777776 55568899999999995544 46778888876554 332 5555 9999999998743
Q ss_pred -----------eeeeeccc----c-----------------------------ccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 352 -----------LVTSFEDH----L-----------------------------LWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 352 -----------l~~s~e~H----~-----------------------------~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.++++.=| + .-+-+-.+-..-.|||++.|+..|+|+
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc
Confidence 22222211 0 001111344567899999999999999
Q ss_pred CCCccccCCceEEEeeecce
Q 015220 388 SDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 388 ~~~~~~~~~gtI~i~~i~tG 407 (411)
|++||+..+=
T Consensus 238 ----------tv~iwn~~~~ 247 (311)
T KOG0315|consen 238 ----------TVKIWNTDDF 247 (311)
T ss_pred ----------eEEEEecCCc
Confidence 9999998764
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.26 E-value=2.6e-10 Score=113.34 Aligned_cols=188 Identities=13% Similarity=0.191 Sum_probs=150.0
Q ss_pred cCCCCe---EEeeCCCCeEEEeecCCCeEEEEE-eeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEe
Q 015220 192 LKWPGF---VEFDDVNGKVLTYSAQDSIYKVFD-LKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 192 l~~Pgf---vEFDd~NGkiLt~~~~ds~ykVWd-L~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I 264 (411)
..|+|= .+|+. +|--+++++.|..+=+|+ +.+=+---.++.+ -|+++.-. ||-+|+.. .+..+ +..||.
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~-gtDk~--v~~wD~ 119 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC-GTDKT--VRGWDA 119 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe-cCCce--EEEEec
Confidence 345554 48988 999999999999999999 4444444455555 99999998 77765443 34444 578999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeeccee-EEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
+||+..+. .-+|.+=|+.+....=++ ||.+ .+..+|+||+++++.++ |. ..+....++..+ |.+--
T Consensus 120 ~tG~~~rk---~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~---t~-~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 120 ETGKRIRK---HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK---TF-ENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ccceeeeh---hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh---cc-ccceeEEEEEecccccceeec
Confidence 99999998 447888888888766666 5554 67899999999999987 32 234445555544 77777
Q ss_pred EecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 338 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 338 fsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+-|+.|.+||++ ++.+-+++||.. -+..+++|++|..+.|-+-|. |+.+||+.
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~D-----tIt~lsls~~gs~llsnsMd~----------tvrvwd~r 246 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHAD-----TITGLSLSRYGSFLLSNSMDN----------TVRVWDVR 246 (338)
T ss_pred cccCceeeeccccCcceEEeecccC-----ceeeEEeccCCCccccccccc----------eEEEEEec
Confidence 799999999999 999999999999 999999999999999999998 99999974
No 32
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.25 E-value=5.2e-11 Score=121.79 Aligned_cols=190 Identities=13% Similarity=0.160 Sum_probs=144.1
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
++||-+| +.+++...|++.++|+...+.++-+|++| +|.++++.-++--+++ .+...-+|+|+|+.+.+.++
T Consensus 225 ~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs--gs~DRtiK~WDl~k~~C~kt--- 298 (459)
T KOG0288|consen 225 IDFDSDN-KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS--GSADRTIKLWDLQKAYCSKT--- 298 (459)
T ss_pred eeecCCC-ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee--ccccchhhhhhhhhhheecc---
Confidence 6676554 55566788999999999999999999977 9999999854432222 23446799999999999999
Q ss_pred ccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn~~ 349 (411)
.|+-++--+ |+.. ...+.+ -++||+.||.++..+.. +.-++- .+..|..+ +++-+.+|+++.+-|++
T Consensus 299 ~l~~S~cnD-I~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~---sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 299 VLPGSQCND-IVCS--ISDVISGHFDKKVRFWDIRSADKTR---SVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred ccccccccc-eEec--ceeeeecccccceEEEeccCCceee---EeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 555544333 5554 333444 46789999999999887 443343 78888877 55555599999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+--++-.-.-.++-.-|..+.+-+|||++++..||.|. +++||+.+||||-
T Consensus 372 t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg----------sv~iW~v~tgKlE 422 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG----------SVYIWSVFTGKLE 422 (459)
T ss_pred cccEEEEeeccccccccccceeEECCCCceeeeccCCC----------cEEEEEccCceEE
Confidence 66444333345556667799999999999999999996 9999999999984
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.25 E-value=5.9e-10 Score=120.42 Aligned_cols=325 Identities=15% Similarity=0.166 Sum_probs=216.4
Q ss_pred cchHH-HhhhcccceeeeccCCCCccc-cccccccccc------ceEEEeeccc--eehhhhccccceeeeccc--ccEE
Q 015220 61 TDAQE-RFRNIRLQEEYDTHDPKGHCS-MVLPFLRKRS------KIIEIVAARD--IVFALAQSGVCAAFCRET--NQRI 128 (411)
Q Consensus 61 ~~~~~-~f~~~~l~~~fd~~d~~~~~~-~~l~~l~~RS------~V~EIv~a~d--ii~~L~~sG~c~af~~~t--~~~i 128 (411)
.++|. +|=-.+....-.+|..++-.. .+.||...|. .|+-|=-..| +++.=..-=..+.|+... |-+.
T Consensus 103 ~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~ 182 (893)
T KOG0291|consen 103 KFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT 182 (893)
T ss_pred EECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce
Confidence 34444 232334444445555555554 5677744443 3444433333 233222223344555433 4458
Q ss_pred EEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCc-eeeeEeeehhhhhhCCCCCCCc----ceeecccCCCCeE-----
Q 015220 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS-SLRCRSTRIEYIRRGKPDAGFA----LFESESLKWPGFV----- 198 (411)
Q Consensus 129 c~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s-~L~cr~~~~~~i~~gk~~~~~~----LF~~~~l~~Pgfv----- 198 (411)
|.+|.-.|-||-+ |+-+++..++||| .|..- .-.|-.-|-+.-++.|=.+|.. +=..|--.||.|-
T Consensus 183 ~~l~gHkd~Vvac-fF~~~~~~l~tvs---kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 183 YALNGHKDYVVAC-FFGANSLDLYTVS---KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred EeccCCCcceEEE-EeccCcceEEEEe---cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 8888777766655 6667778899987 33311 1233322322222211111100 0001122333332
Q ss_pred EeeCCC-Ce-----------EEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 199 EFDDVN-GK-----------VLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 199 EFDd~N-Gk-----------iLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
-|-..| .+ +|+-.-..+.+..+.|-++.+|++|+ ++.|+.+.+. -|--||+.-+. .--|-||.
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--lgQLlVwe 336 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--LGQLLVWE 336 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--cceEEEEE
Confidence 233333 22 33333347888899999999996665 7799999998 77788888766 44577899
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf 338 (411)
.++..-+.. ..||...|..|+-++|+++|+- ++.|+||||.++|-++. |--.|.+++..+-.+ +..|+-
T Consensus 337 WqsEsYVlK---QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v---TFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 337 WQSESYVLK---QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV---TFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eeccceeee---ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE---EeccCCCceEEEEEEecCCEEEEe
Confidence 999888877 8899999999999999999987 78999999999999998 999999998887765 557777
Q ss_pred -ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 339 -RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|||||.||+. +-=.|||..-.. ..-..|+..|-|++.+.|..|. =-|.||+..||+++
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p----~QfscvavD~sGelV~AG~~d~---------F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEP----IQFSCVAVDPSGELVCAGAQDS---------FEIFVWSVQTGQLL 471 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCc----eeeeEEEEcCCCCEEEeeccce---------EEEEEEEeecCeee
Confidence 89999999999 999999987666 2456688889999999999885 36999999999986
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.25 E-value=5.2e-10 Score=120.86 Aligned_cols=182 Identities=13% Similarity=0.158 Sum_probs=152.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
-++|..++.+++|+-+||||.+..-|+.+-+++ .|..+..+ .|.+|+.+.=- --+..||+..+.-.+||..
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD---GtVRAwDlkRYrNfRTft~--- 432 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD---GTVRAWDLKRYRNFRTFTS--- 432 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC---CeEEeeeecccceeeeecC---
Confidence 378999999999999999999999999999988 89999999 78776554322 2478999999999999664
Q ss_pred cCCcceeeeeecc--eeEE---eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 279 RNKKVDFIEQFNE--KLLV---KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 279 h~K~I~FLE~~~e--kllI---KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
-.|+||-++..| +.++ .|++=.|.+|+++||++.. .+-+|-..+..|..+ ++++|+ .|+|||+||.-
T Consensus 433 -P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 433 -PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred -CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 389999888877 6655 4678899999999999999 899999999988877 789999 88999999988
Q ss_pred Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+. -+-+++-. . .+-++..+|||+-|.+..-|. -|.+||++.++-
T Consensus 509 ~s~~~vEtl~i~-s-----dvl~vsfrPdG~elaVaTldg----------qItf~d~~~~~q 554 (893)
T KOG0291|consen 509 SSSGTVETLEIR-S-----DVLAVSFRPDGKELAVATLDG----------QITFFDIKEAVQ 554 (893)
T ss_pred ccCceeeeEeec-c-----ceeEEEEcCCCCeEEEEEecc----------eEEEEEhhhcee
Confidence 55 55566532 2 467899999999999988774 999999987764
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.23 E-value=4.4e-11 Score=123.77 Aligned_cols=191 Identities=16% Similarity=0.233 Sum_probs=149.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
++.|-...|.-|.+++.|+.++||++.+ +.++++-.++ -|.+++.| +|.-++.. .=--++|+||.|||+++-+
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~---sfD~~lKlwDtETG~~~~~ 295 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA---SFDRFLKLWDTETGQVLSR 295 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee---ecceeeeeeccccceEEEE
Confidence 4667788999999999999999999999 9999888877 89999999 77755443 3446899999999999998
Q ss_pred eeeccccCCcceeeeeecce--eEEe-ecCceeeEEEcccceEEEeeccccCCC---ceEEEEeeceeEEEE-ecCeEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEK--LLVK-QENENLQILDVRNFELTEVSRTEFMTP---SAFIFLYENQLFLTF-RNRTVAV 345 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ek--llIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hp---sAfifLy~sqlFlSf-sd~tI~i 345 (411)
|. -.+.+..+.-+++. +++. --+.+|+.||+++||... ++.-|= ....|+..+.-|+|- .|++++|
T Consensus 296 f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdks~ri 368 (503)
T KOG0282|consen 296 FH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDKSVRI 368 (503)
T ss_pred Ee----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence 54 56888999999987 3443 467899999999999776 444443 456789999999999 6779999
Q ss_pred EecC-Cceee----------------------------------------------eeccccccCCCCccceEEEcCCCC
Q 015220 346 WNFR-GELVT----------------------------------------------SFEDHLLWHPDCNTNNIYITSDQD 378 (411)
Q Consensus 346 Wn~~-Gel~~----------------------------------------------s~e~H~~~~~~c~~n~i~Is~Dqd 378 (411)
|+.+ +-+.. .|+||.. +.|.+ .+--||||+
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v--aGys~-~v~fSpDG~ 445 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV--AGYSC-QVDFSPDGR 445 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec--cCcee-eEEEcCCCC
Confidence 9987 54332 3444433 22221 345699999
Q ss_pred EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 379 LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 379 ~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|+||..|- .++|||-.|-|++
T Consensus 446 ~l~SGdsdG----------~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 446 TLCSGDSDG----------KVNFWDWKTTKLV 467 (503)
T ss_pred eEEeecCCc----------cEEEeechhhhhh
Confidence 999999885 9999999887653
No 36
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-09 Score=108.09 Aligned_cols=200 Identities=17% Similarity=0.211 Sum_probs=142.1
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
.+--+||++ ||..|+.+.+|.+++++|..+.+++.+|..+ .++-++.-....-+++..++.---|+.++|+|-+.++
T Consensus 16 ~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 16 KINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred ceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 355689986 5666666899999999999999999999977 8888888855555666666666789999999999999
Q ss_pred EeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeec-----cccCCCceEEEEeec------------
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSR-----TEFMTPSAFIFLYEN------------ 332 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~-----T~f~hpsAfifLy~s------------ 332 (411)
- .-||.+.|..|+..|-.= |=.+.+..+++||++..+.+-.-+ -.=+.|+.-+|...+
T Consensus 95 Y---F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 95 Y---FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred E---cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 9 559999999999987544 555678899999999766554111 111244444442211
Q ss_pred -----------------------------eeEEEEecCeEEEEe-cCCceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 333 -----------------------------QLFLTFRNRTVAVWN-FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 333 -----------------------------qlFlSfsd~tI~iWn-~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
-+++|=.++.+.+-| ++|++.-+|++|..---. .=....|||+++|+|
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~--~~~a~ftPds~Fvl~ 249 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL--PLSATFTPDSKFVLS 249 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc--ceeEEECCCCcEEEE
Confidence 112222333333333 236666677766651111 125678999999999
Q ss_pred EecCCCCCccccCCceEEEeeecceee
Q 015220 383 YCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|+.|. +|+||+++||+-
T Consensus 250 gs~dg----------~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 250 GSDDG----------TIHVWNLETGKK 266 (311)
T ss_pred ecCCC----------cEEEEEcCCCcE
Confidence 99886 999999999974
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.22 E-value=2.5e-10 Score=122.78 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=141.5
Q ss_pred CCeEEEeecCCCeEEEEEeeCce--------EE-----------------------EEeccC--ceeEEEEe-CCEEEEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYT--------ML-----------------------YSISDK--NVQEIKIS-PGIMLLI 249 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys--------~i-----------------------ysLs~~--~VqeIkIS-dG~~Lai 249 (411)
++..|+.+-+|+.++||.|++-+ .+ ++|.+| -|=+.++| +.-||+.
T Consensus 389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlS 468 (707)
T KOG0263|consen 389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLS 468 (707)
T ss_pred CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceee
Confidence 34488888899999999999742 11 222222 45566666 4444444
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
... -..+.||++.|-..+.... ||.-||=++...|=+.+.++. +..=++|..-+..+-+|= =+|=+-+=
T Consensus 469 cSE---D~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif---aghlsDV~ 539 (707)
T KOG0263|consen 469 CSE---DSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF---AGHLSDVD 539 (707)
T ss_pred ccC---CcceeeeecccceeEEEec---CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh---cccccccc
Confidence 332 2568999999999999844 999999999999999988874 457788988887666632 22333333
Q ss_pred E---EeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 F---LYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 f---Ly~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
| =-.+.+.+|+ +|+|+|+||-. |.-||-|.||.. -+..++.||+|..|+||+.|. .|+||
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-----~V~al~~Sp~Gr~LaSg~ed~----------~I~iW 604 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-----PVTALAFSPCGRYLASGDEDG----------LIKIW 604 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-----ceEEEEEcCCCceEeecccCC----------cEEEE
Confidence 3 2355888999 89999999999 999999999999 999999999999999999997 99999
Q ss_pred eecceeee
Q 015220 403 LLMFVTCK 410 (411)
Q Consensus 403 ~i~tGk~~ 410 (411)
||-+|+++
T Consensus 605 Dl~~~~~v 612 (707)
T KOG0263|consen 605 DLANGSLV 612 (707)
T ss_pred EcCCCcch
Confidence 99999864
No 38
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.21 E-value=1.1e-09 Score=108.71 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=152.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC------cEEeE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG------TVLKS 272 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG------~~L~t 272 (411)
-++.|-+++.+||+-+-|||.-|.... ..|...=|+.+.+| .|.|+|-.-=.+. -.|+++.+- ++-+.
T Consensus 64 s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~---Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 64 STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK---CSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce---eEEEecccccccccceeeee
Confidence 367888999999999999999987765 44556689999999 7898887654443 346666644 22223
Q ss_pred eeeccccCCcceeeeeecceeEE-eecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
|-+|.-=+-..+-.+|.++| .+++.+.-+||+-+|+.+. ..-+|.--+..|..+ +.|+|+ .|++..+|
T Consensus 141 ---l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 141 ---LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred ---ecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEE---EecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 67888888777777788855 5689999999999999998 666899999998866 789999 99999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|.| |--+.+|++|.. -+|+|-.-|+|+-+++||.|. |.+|+||.++.
T Consensus 215 D~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~----------tcRlyDlRaD~ 262 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDA----------TCRLYDLRADQ 262 (343)
T ss_pred eccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCc----------eeEEEeecCCc
Confidence 999 888889999999 999999999999999999997 99999998864
No 39
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-09 Score=108.14 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=140.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
++|---.+.+-|++.|.|||.+.+.-+.+-+| .|.++.+| |.-.+....+-+ -||+|+.-.+..+.-.. -.+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk---Tiklwnt~g~ck~t~~~--~~~ 147 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK---TIKLWNTLGVCKYTIHE--DSH 147 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc---eeeeeeecccEEEEEec--CCC
Confidence 34555666666999999999999888777766 99999999 666666666554 48999998776655311 011
Q ss_pred CCcceeeeeecc--eeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-C
Q 015220 280 NKKVDFIEQFNE--KLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-G 350 (411)
Q Consensus 280 ~K~I~FLE~~~e--kllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-G 350 (411)
+-=|..+--+|. .-+| .+++..+|+|||.+-+... +.-+|..-+..++.| .+..++ .|+++-+||++ |
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 333445555554 3344 4588999999999998887 888999999999999 778888 99999999999 8
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+-+-+|+.-. .++++..+|.-=.|. .-.+. +|+|||+.+++|+
T Consensus 225 k~lysl~a~~------~v~sl~fspnrywL~-~at~~----------sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 225 KNLYSLEAFD------IVNSLCFSPNRYWLC-AATAT----------SIKIWDLESKAVV 267 (315)
T ss_pred ceeEeccCCC------eEeeEEecCCceeEe-eccCC----------ceEEEeccchhhh
Confidence 8888886544 599999999865554 44444 7999999999886
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2e-11 Score=122.78 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=122.6
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE----EEe------ccCceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML----YSI------SDKNVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i----ysL------s~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
||.--.| -|+|.-|++++-|+-+.|||+.+.+.= |+- -|+-|.-|..| |.-|||.+.... -||||
T Consensus 215 h~EcA~F-SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---kIKvW 290 (508)
T KOG0275|consen 215 HVECARF-SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---KIKVW 290 (508)
T ss_pred chhheee-CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---cEEEE
Confidence 4444445 478999999999999999999998743 332 35588888899 999998887665 47999
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF 338 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf 338 (411)
.|+||++|+.|.- . |...+.+|-.+ |++-+.
T Consensus 291 ri~tG~ClRrFdr--A-------------------------------------------HtkGvt~l~FSrD~SqiLS~s 325 (508)
T KOG0275|consen 291 RIETGQCLRRFDR--A-------------------------------------------HTKGVTCLSFSRDNSQILSAS 325 (508)
T ss_pred EEecchHHHHhhh--h-------------------------------------------hccCeeEEEEccCcchhhccc
Confidence 9999999987541 2 44444555433 555455
Q ss_pred ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 339 RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 339 sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|.|+||--+. |..+.-|.||.. ++|.+-.|+||.-|||+|.|- ||++||.+|++|+
T Consensus 326 fD~tvRiHGlKSGK~LKEfrGHsS-----yvn~a~ft~dG~~iisaSsDg----------tvkvW~~KtteC~ 383 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKEFRGHSS-----YVNEATFTDDGHHIISASSDG----------TVKVWHGKTTECL 383 (508)
T ss_pred ccceEEEeccccchhHHHhcCccc-----cccceEEcCCCCeEEEecCCc----------cEEEecCcchhhh
Confidence 67888888888 889999999999 899999999999999999996 9999999999996
No 41
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.18 E-value=9.5e-09 Score=89.91 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=137.8
Q ss_pred CCCe-EEEeecC-CCeEEEEEeeC-ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGK-VLTYSAQ-DSIYKVFDLKN-YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGk-iLt~~~~-ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+++. .++.... ++.+++||..+ ...+..+..+ .|..+..+ ++..++.... ....+++|++.+++.+.++.
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-- 195 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLA-- 195 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeec--
Confidence 3444 5555445 99999999998 7777666644 89999999 6654444432 67889999999999999844
Q ss_pred cccCCcceeeeeeccee-EEe--ecCceeeEEEcccceEEEeeccccCCCceE--EEEeeceeEEEE-ecCeEEEEecCC
Q 015220 277 LHRNKKVDFIEQFNEKL-LVK--QENENLQILDVRNFELTEVSRTEFMTPSAF--IFLYENQLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekl-lIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAf--ifLy~sqlFlSf-sd~tI~iWn~~G 350 (411)
+|..++..++..+++- ++. ..+..+++||+.+++.... +..+|+... .|......+++. .|+++++|+.+.
T Consensus 196 -~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 196 -GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred -cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecC
Confidence 5899999999997773 444 5889999999997777762 355565552 233333566666 999999999993
Q ss_pred c--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 351 E--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 351 e--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
. .+..+.+|.. .+..+...|+++.+++++.|. ++.+||+.+++.
T Consensus 273 ~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~~~ 318 (466)
T COG2319 273 SSSLLRTLSGHSS-----SVLSVAFSPDGKLLASGSSDG----------TVRLWDLETGKL 318 (466)
T ss_pred CCcEEEEEecCCc-----cEEEEEECCCCCEEEEeeCCC----------cEEEEEcCCCce
Confidence 3 2555577755 788889999999999988776 799999888764
No 42
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.17 E-value=5.3e-09 Score=106.49 Aligned_cols=328 Identities=17% Similarity=0.180 Sum_probs=225.4
Q ss_pred cccchhhhhhhhccccccCCcceec--------cchHHHhhhcccc------eee-eccCCCCcccccccccccccceEE
Q 015220 36 DGFVNSVKKLQRREISSKRDRAFTM--------TDAQERFRNIRLQ------EEY-DTHDPKGHCSMVLPFLRKRSKIIE 100 (411)
Q Consensus 36 ~~~~~~~~k~~~~~i~~~~~~~~~~--------~~~~~~f~~~~l~------~~f-d~~d~~~~~~~~l~~l~~RS~V~E 100 (411)
.+..+-|-||-+.|=+....+-|-. ++-.|--+..++- -|| .-+.|+...-- +-.--=|--
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~----~~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQC----FLHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcccc----ccchhhhhh
Confidence 4456778888888877666665521 3344444443332 233 33444332111 111111222
Q ss_pred EeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC
Q 015220 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (411)
Q Consensus 101 Iv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~ 180 (411)
|=.|.+.|+-=++-|+.+.+|+. |+-+-.+=...+-+-...+|+++..+--+|| +|-| +.|.=-.+.-......-.
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvs--as~D-qtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVS--ASMD-QTLRLWKWNVGENKVKAL 186 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEE--ecCC-ceEEEEEecCchhhhhHH
Confidence 33446889999999999999976 8866666555555544889999887766644 4455 444444443222211000
Q ss_pred CCCCcceeecccCCCCeEEee--CCCCeEEEeecCCCeEEEEEee-------------------------CceEEEEecc
Q 015220 181 DAGFALFESESLKWPGFVEFD--DVNGKVLTYSAQDSIYKVFDLK-------------------------NYTMLYSISD 233 (411)
Q Consensus 181 ~~~~~LF~~~~l~~PgfvEFD--d~NGkiLt~~~~ds~ykVWdL~-------------------------~Ys~iysLs~ 233 (411)
...-.|-+-||== +.+|-...+..-|.+++||+.. +-+++.+|.+
T Consensus 187 --------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 187 --------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred --------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 0111555555532 4667778888889999999921 1236777777
Q ss_pred C--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecC--ceeeEEEccc
Q 015220 234 K--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRN 309 (411)
Q Consensus 234 ~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~--~~LkI~dL~t 309 (411)
| -|++|-.+|.-.+.....-| -||.|||+||...-+ +--+|.+..+++++..-||+.++ ..|++||=++
T Consensus 259 Ht~~Vs~V~w~d~~v~yS~SwDH---TIk~WDletg~~~~~----~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 259 HTEPVSSVVWSDATVIYSVSWDH---TIKVWDLETGGLKST----LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccceeeEEEcCCCceEeecccc---eEEEEEeecccceee----eecCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 6 78888888755555555555 389999999999888 44569999999999888888854 6899999999
Q ss_pred ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEc-CCCCEEE
Q 015220 310 FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYIT-SDQDLII 381 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is-~Dqd~ii 381 (411)
+.---|..++-+|..++..|--+ ..|+|+ -|||+++||.| -.++-++.+| +++-+.+. .++.+|+
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------~DKvl~vdW~~~~~Iv 404 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------NDKVLSVDWNEGGLIV 404 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------CceEEEEeccCCceEE
Confidence 98888999999999999999876 779999 89999999999 3388899999 45666665 5677999
Q ss_pred EEecCCCCCccccCCceEEEee
Q 015220 382 SYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~ 403 (411)
||.+|+ +|.|+.
T Consensus 405 SGGaD~----------~l~i~~ 416 (423)
T KOG0313|consen 405 SGGADN----------KLRIFK 416 (423)
T ss_pred eccCcc----------eEEEec
Confidence 999999 888763
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.16 E-value=1.2e-09 Score=106.54 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=147.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+++|.-...++.|.++|.|+-.-..+|.+-+++ ||.+..+| |..=++..-. -=-+.+||.+||+.++. +=|
T Consensus 26 N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~Rr---~rg 99 (307)
T KOG0316|consen 26 NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG---DKAVQVWDVNTGKVDRR---FRG 99 (307)
T ss_pred ccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC---CceEEEEEcccCeeeee---ccc
Confidence 466777777899999999999999999777655 99999999 5554433222 23477999999999999 558
Q ss_pred cCCcceeeeeecceeEEeec--CceeeEEEccc--ceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLVKQE--NENLQILDVRN--FELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t--~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Ge 351 (411)
|-.+|+.+.--.|--.+.++ +.++++||+++ -|+++ ++......+..+..+ ..-+++ -|+++|.|+.| |.
T Consensus 100 H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ---ildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 100 HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ---ILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc---hhhhhcCceeEEEecccEEEeeccCCcEEEEEeecce
Confidence 99999988766666688776 58999999998 46777 444445677777766 445666 89999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+....-+| -+|.+-+|+||....-+|-|. |+.+-|-.|||++
T Consensus 177 l~sDy~g~-------pit~vs~s~d~nc~La~~l~s----------tlrLlDk~tGklL 218 (307)
T KOG0316|consen 177 LSSDYFGH-------PITSVSFSKDGNCSLASSLDS----------TLRLLDKETGKLL 218 (307)
T ss_pred eehhhcCC-------cceeEEecCCCCEEEEeeccc----------eeeecccchhHHH
Confidence 87766666 468999999999999999998 9999999999986
No 44
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.15 E-value=1.5e-09 Score=112.57 Aligned_cols=182 Identities=13% Similarity=0.160 Sum_probs=141.3
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEeccC--------ceeEEEEeCCEEEEEEecCCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDK--------NVQEIKISPGIMLLIFTKASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~--------~VqeIkISdG~~Lai~q~t~~~ipi 259 (411)
.+|+|- ..|--|++.+-|++..+||..+.+.. +++..- .-.++..| ..-.-|
T Consensus 280 ~slKWn-------k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts-----------~td~~i 341 (524)
T KOG0273|consen 280 FSLKWN-------KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS-----------STDGCI 341 (524)
T ss_pred EEEEEc-------CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec-----------CCCceE
Confidence 467774 35666888889999999999777654 444321 22445555 112235
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEe-------
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY------- 330 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy------- 330 (411)
.|+-|---++.++ +.||..||..|+--+-+.|+.+ .+..||||++..+-... -+..|....+-.-
T Consensus 342 ~V~kv~~~~P~~t---~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~---~l~~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 342 HVCKVGEDRPVKT---FIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH---DLQAHSKEIYTIKWSPTGPV 415 (524)
T ss_pred EEEEecCCCccee---eecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh---hhhhhccceeeEeecCCCCc
Confidence 7777877888899 5679999999999977776654 88999999998877766 5666665554432
Q ss_pred -----eceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 331 -----ENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 331 -----~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.+-..++- .|+||++||.. |-++.+|.+|+- ++..++-||||..+.||+-|+ .++||+
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-----pVysvafS~~g~ylAsGs~dg----------~V~iws 480 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-----PVYSVAFSPNGRYLASGSLDG----------CVHIWS 480 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-----ceEEEEecCCCcEEEecCCCC----------eeEecc
Confidence 22335555 99999999999 999999999999 999999999999999999998 999999
Q ss_pred ecceeee
Q 015220 404 LMFVTCK 410 (411)
Q Consensus 404 i~tGk~~ 410 (411)
+.|||+.
T Consensus 481 ~~~~~l~ 487 (524)
T KOG0273|consen 481 TKTGKLV 487 (524)
T ss_pred ccchhee
Confidence 9999974
No 45
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.14 E-value=3.6e-09 Score=105.19 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=154.9
Q ss_pred eecccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeE
Q 015220 188 ESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLK 260 (411)
Q Consensus 188 ~~~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiK 260 (411)
..+--.|-||+ +|=| |+.|||.+ .|.+.-.||+++.+.+.+..+| +|..+.++| +.-.+...+- -..|
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~S-GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD---~~ak 212 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGS-GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD---KSAK 212 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecC-CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc---ccee
Confidence 34455677886 5666 88888865 4788999999999999999998 999999996 3333333332 3579
Q ss_pred EEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCc---eEEEEeec---
Q 015220 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPS---AFIFLYEN--- 332 (411)
Q Consensus 261 Il~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hps---AfifLy~s--- 332 (411)
|||+-.|....+ +-||..+|+.+.-||++.=++. ++...++|||+...-..+ |-|+. -+..++.|
T Consensus 213 lWD~R~~~c~qt---F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~----ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 213 LWDVRSGQCVQT---FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV----YSHDSIICGITSVAFSKSG 285 (343)
T ss_pred eeeccCcceeEe---ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee----eccCcccCCceeEEEcccc
Confidence 999999999999 5699999999999999997765 778999999999776652 32222 24446655
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.|++.+ .|.++.|||.= ||.+..|.||.. -+.-+-.||||--+.+||=|. +++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-----RvScl~~s~DG~av~TgSWDs----------~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-----RVSCLGVSPDGMAVATGSWDS----------TLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCC-----eeEEEEECCCCcEEEecchhH----------heeecC
Confidence 788887 99999999987 999999999999 999999999999999999999 999994
No 46
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.13 E-value=2.3e-09 Score=104.99 Aligned_cols=187 Identities=14% Similarity=0.258 Sum_probs=137.9
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc-cC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-RN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-h~ 280 (411)
.+||-...+++|++.|||||+.-++-+..... -|-+|-+-|.|-=++.--.+ -.|.||||-+-...+. |.+ .-
T Consensus 93 ~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqs--g~irvWDl~~~~c~~~---liPe~~ 167 (311)
T KOG0315|consen 93 CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQS--GNIRVWDLGENSCTHE---LIPEDD 167 (311)
T ss_pred ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCC--CcEEEEEccCCccccc---cCCCCC
Confidence 47899999999999999999997766666555 78888888655444433332 3579999988776665 222 22
Q ss_pred CcceeeeeecceeEEee--cCceeeEEEcccceEEE--eeccccCCCc--eEEEEeec--eeEEEE-ecCeEEEEecCCc
Q 015220 281 KKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTE--VSRTEFMTPS--AFIFLYEN--QLFLTF-RNRTVAVWNFRGE 351 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~--v~~T~f~hps--AfifLy~s--qlFlSf-sd~tI~iWn~~Ge 351 (411)
-+|+.+.+.+|+-++.- ...+.-+|+|.++.-.- +|.+.|-.-+ .--|++-. +.++|- +|.|+.|||.++-
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 56888999988875555 44578999999954332 3444442211 22234432 667777 9999999999987
Q ss_pred --eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 352 --LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 352 --l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+-.++++|+.|-=|| +.|.||+.||.|+.|. +.++||+.+||-
T Consensus 248 ~kle~~l~gh~rWvWdc-----~FS~dg~YlvTassd~----------~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDC-----AFSADGEYLVTASSDH----------TARLWDLSAGKE 292 (311)
T ss_pred eeeEEEeecCCceEEee-----eeccCccEEEecCCCC----------ceeecccccCce
Confidence 445899999998888 5799999999999998 999999999984
No 47
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.4e-09 Score=109.41 Aligned_cols=256 Identities=16% Similarity=0.133 Sum_probs=185.5
Q ss_pred cceehhhhccccceeeeccccc--EEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~--~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~ 182 (411)
+.+-++|.++-. .++..+++ .+|-++ .+-|-|+=|+....-|.+ -+ ++. ++.+=+..+-|-
T Consensus 189 n~laValg~~vy--lW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~Lav--G~-~~g-------~v~iwD~~~~k~-- 251 (484)
T KOG0305|consen 189 NVLAVALGQSVY--LWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAV--GT-SDG-------TVQIWDVKEQKK-- 251 (484)
T ss_pred CeEEEEecceEE--EEecCCCceEEeEecC---CCceEEEEECCCCCEEEE--ee-cCC-------eEEEEehhhccc--
Confidence 344444443332 34445554 566666 666677777766655554 11 111 122222222110
Q ss_pred CCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE-eccC--ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISDK--NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 183 ~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys-Ls~~--~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
-+.+. ..|.+.|-==+=|+.+++++..++.+.++|++.-+.+.+ +.++ +|--.+.| ||.+||.+- +-.-
T Consensus 252 ~~~~~----~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg---nDN~ 324 (484)
T KOG0305|consen 252 TRTLR----GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG---NDNV 324 (484)
T ss_pred ccccc----CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC---Cccc
Confidence 00111 115666655556799999999999999999999887665 5544 88888888 999988764 4445
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEeec----CceeeEEEcccceEEEeeccccCCCceEEEEeec-
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQE----NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN- 332 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe----~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s- 332 (411)
+.||++.+-+++.+ +..|+.-|..|.-.|=.- |++.+ +.-|++||..+|+++. +.. +-+-+--|..+
T Consensus 325 ~~Iwd~~~~~p~~~---~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~---~vd-tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFT---FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID---SVD-TGSQVCSLIWSK 397 (484)
T ss_pred eEeccCCCccccEE---EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec---ccc-cCCceeeEEEcC
Confidence 78999988888888 779999999999988777 88875 4579999999999998 443 33444446644
Q ss_pred ---eeEEEE--ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 333 ---QLFLTF--RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 333 ---qlFlSf--sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
++..|. +++-|+||+.- -.+++.|.+|.. -+=.++.||||+.|++|..|. |+++|+++.
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~-----RVl~la~SPdg~~i~t~a~DE----------Tlrfw~~f~ 462 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS-----RVLYLALSPDGETIVTGAADE----------TLRFWNLFD 462 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeeecCCcc-----eeEEEEECCCCCEEEEecccC----------cEEeccccC
Confidence 777777 99999999998 889999999999 888999999999999999999 999999987
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.12 E-value=1.4e-09 Score=110.54 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=147.6
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec----cC--ceeEEEEe-CCEEEEEEecCCCceeeEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DK--NVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs----~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl 262 (411)
.+|+.-..+-=|+..+ .++..+.|.+++.|-.+......+.. +| -|+.|.+. +|.+++.+.--. .||||
T Consensus 145 ~~ik~v~~v~~n~~~~-~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~---~lkiW 220 (423)
T KOG0313|consen 145 GPIKSVAWVIKNSSSC-LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT---MLKIW 220 (423)
T ss_pred cceeeeEEEecCCccc-eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc---eeeec
Confidence 4555555566666655 56667889999999999987553333 33 78999966 998877665443 58999
Q ss_pred Eec-------------------------CCcEEeEeeeccccCCcceeeeeec-ceeEEeecCceeeEEEcccceEEEee
Q 015220 263 SIE-------------------------DGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVS 316 (411)
Q Consensus 263 ~I~-------------------------tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQe~~~LkI~dL~t~e~~~v~ 316 (411)
+-+ +++++.+ |-||..+|..++-.. +-++=.+=+|.||.|||-++..+-
T Consensus 221 s~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt---l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~-- 295 (423)
T KOG0313|consen 221 SVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT---LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS-- 295 (423)
T ss_pred ccCCCccccccccchhhhhhhhhhhcccccCceEE---ecccccceeeEEEcCCCceEeecccceEEEEEeeccccee--
Confidence 932 4455555 889999987776655 444777889999999999999987
Q ss_pred ccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC---Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 317 RTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR---GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 317 ~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~---Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
|++ .+.+|.++... .|++++ +|+-||+||+| |..+. +|.||..|-.-|.-+ ..+.-.++|||-|.
T Consensus 296 -~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws----p~~~~~~~S~S~D~- 368 (423)
T KOG0313|consen 296 -TLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS----PTNEFQLVSGSYDN- 368 (423)
T ss_pred -eee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC----CCCceEEEEEecCC-
Confidence 776 88888888766 889999 99999999999 55666 999999975444332 24556789999998
Q ss_pred CCccccCCceEEEeeeccee
Q 015220 389 DDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~tGk 408 (411)
+++|||..+-|
T Consensus 369 ---------t~klWDvRS~k 379 (423)
T KOG0313|consen 369 ---------TVKLWDVRSTK 379 (423)
T ss_pred ---------eEEEEEeccCC
Confidence 99999998865
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.10 E-value=7.5e-09 Score=108.69 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=157.0
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcc
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I 283 (411)
-++.+++|++..+|.=-+|++=.+.-+| .|+.+|.| ||-+.|...--. -+-|+|=.||+.+..+.---+|+--|
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg---ki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG---KIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc---cEEEEcCCCccEEEEecCCCCccccE
Confidence 3566788999999999999998888876 99999999 888766544333 25589999999999966556899999
Q ss_pred eeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCC----ceEEEEeeceeEEEE-ecCeEEEEecC-Cceeee
Q 015220 284 DFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTP----SAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 284 ~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hp----sAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s 355 (411)
..|.=+||.. +-.+.+..+||||+.++++.. |.-|-. ..+=+|..+..++|. -+|+|-+.|+. ++++..
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~~slv~---t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS---TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeeccceEE---EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 9999998754 677899999999999998887 443333 457788899999999 89999999999 999999
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.||.- ++..+..++|+++|+|||.|- .|+=||+.+|++
T Consensus 316 i~GHnK-----~ITaLtv~~d~~~i~SgsyDG----------~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 316 ISGHNK-----SITALTVSPDGKTIYSGSYDG----------HINSWDSGSGTS 354 (603)
T ss_pred eccccc-----ceeEEEEcCCCCEEEeeccCc----------eEEEEecCCccc
Confidence 999999 999999999999999999995 999999999975
No 50
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.09 E-value=4.3e-08 Score=85.81 Aligned_cols=185 Identities=18% Similarity=0.262 Sum_probs=139.8
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEeccC---ceeEEEE-e-CCE-EEEEEecCCCceeeEEEEecC-CcEE
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK---NVQEIKI-S-PGI-MLLIFTKASGHVPLKILSIED-GTVL 270 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~---~VqeIkI-S-dG~-~Lai~q~t~~~ipiKIl~I~t-G~~L 270 (411)
+|+ .++..+.....++.+.+|++.... .+..+... .+..+.. + ++. +++..... ...+++|++.+ +...
T Consensus 72 ~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 72 AFS-PDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL--DGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEC-CCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCC--CccEEEEEecCCCeEE
Confidence 344 445555555589999999999987 67666652 5777777 4 444 33322222 23899999999 8888
Q ss_pred eEeeeccccCCcceeeeeecceeEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEE-EecCe
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLT-FRNRT 342 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlS-fsd~t 342 (411)
.. +..|.+.|.-+..+++...+... +..+++||+.+++... +.-.|...+..+..+ .++++ ..|++
T Consensus 149 ~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 149 RT---LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred EE---EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE---eeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 87 77899999999999988544443 8999999999977777 555577778887766 26777 48999
Q ss_pred EEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 343 VAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 343 I~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|.+|+.+ |+.+. .+.+|.. .. ....++++.++++++.|. ++.+||+.+..
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~~ 274 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLASGSSDG----------TIRLWDLRSSS 274 (466)
T ss_pred EEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEEecCCC----------cEEEeeecCCC
Confidence 9999998 88888 6888888 32 228999999999888887 99999998665
No 51
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=4.2e-09 Score=105.44 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=148.6
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CC---EEEEEEecCCCceee
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PG---IMLLIFTKASGHVPL 259 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG---~~Lai~q~t~~~ipi 259 (411)
||.-. .|-|-+.==.++|+-+++++.|.+++|+||+.=+.+-.|.++ -|-..+.. |- ++|.-+ . ---|
T Consensus 36 lF~~~--aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s--d--DG~i 109 (362)
T KOG0294|consen 36 LFAFS--AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS--D--DGHI 109 (362)
T ss_pred ccccc--ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec--C--CCcE
Confidence 55432 355666667899999999999999999999999999988877 55555555 22 322211 1 1236
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecceeE--EeecCceeeEEEcccceEEEeecc-------ccCCCc------
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL--VKQENENLQILDVRNFELTEVSRT-------EFMTPS------ 324 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekll--IKQe~~~LkI~dL~t~e~~~v~~T-------~f~hps------ 324 (411)
.+|+...=+++++ +=+|+..|.+|.++|++-| =-.+++.|+.|||.+|+.--|.+= .| .|+
T Consensus 110 ~iw~~~~W~~~~s---lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w-~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKS---LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSW-SPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeee---ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEE-cCCCCEEEE
Confidence 7999999999999 5589999999999998764 345999999999998764332110 11 121
Q ss_pred ---------------------------eEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEE--Ec
Q 015220 325 ---------------------------AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY--IT 374 (411)
Q Consensus 325 ---------------------------AfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~--Is 374 (411)
-..|++.+.++.-+.|..|.+||-+ +.+++.|..|.. -++.+| --
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~-----RVK~i~~~~~ 260 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN-----RVKDIASYTN 260 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh-----heeeeEEEec
Confidence 2223445566666699999999999 999999999999 888886 56
Q ss_pred CCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 375 SDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 375 ~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|++.+|++.|.|- .|+|||+.+-
T Consensus 261 ~~~~~lvTaSSDG----------~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDG----------FIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCc----------eEEEEEcccc
Confidence 7899999999995 9999999875
No 52
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.07 E-value=7.5e-10 Score=118.10 Aligned_cols=190 Identities=15% Similarity=0.239 Sum_probs=148.9
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeC-ce-----EEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCC--c
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKN-YT-----MLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG--T 268 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~-Ys-----~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG--~ 268 (411)
.|.+||+.|-.++-|+++++|+... |. .+-++.+| =|.+|.++ +|--|. -..+-.-+|+|+.+-+ =
T Consensus 32 ~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlI---S~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 32 LDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLI---SASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred ccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceE---EecCCceEEEeecccCcch
Confidence 4788999898999999999999865 33 25555555 67788887 553222 1234457999999987 3
Q ss_pred EEeEeeeccccCCcceeeee-ecceeEEeec--CceeeEEEcccceE--------EEeeccccCCCceEEEEeec---ee
Q 015220 269 VLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQE--NENLQILDVRNFEL--------TEVSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 269 ~L~t~~~LL~h~K~I~FLE~-~~ekllIKQe--~~~LkI~dL~t~e~--------~~v~~T~f~hpsAfifLy~s---ql 334 (411)
++.+ +=-|+-=|..|+. -..+-+++++ +++|.+||+.++-- ..+..+.-++...+..||.| .+
T Consensus 109 c~st---ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 109 CMST---IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred hHhh---hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 4444 3456677888887 6666688886 58999999998743 22334444788999999988 46
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++++ -.+-+++||++ +..+..|-||-- |++-+.+++||..++|+|.|. ||++|||---+|+
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTd-----NVr~ll~~dDGt~~ls~sSDg----------tIrlWdLgqQrCl 248 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTD-----NVRVLLVNDDGTRLLSASSDG----------TIRLWDLGQQRCL 248 (735)
T ss_pred EEecCcccceEEeccccccceeeeecccc-----ceEEEEEcCCCCeEeecCCCc----------eEEeeecccccee
Confidence 8888 88899999999 999999999999 999999999999999999996 9999999888876
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.9e-09 Score=115.90 Aligned_cols=182 Identities=17% Similarity=0.232 Sum_probs=139.6
Q ss_pred CeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+-+.+++++|-.+|||+|++-.+||+|.+| -|-.+-.- |=++=|..++ -|+||+-++++++.. |-||
T Consensus 63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQ-----TIrIWNwqsr~~iav---ltGH 134 (1202)
T KOG0292|consen 63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQ-----TIRIWNWQSRKCIAV---LTGH 134 (1202)
T ss_pred CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCC-----eEEEEeccCCceEEE---EecC
Confidence 345578999999999999999999999977 44444332 2222222222 389999999999998 7799
Q ss_pred CCcceeeeeec-cee-EEeecCceeeEEEcccceEEEeecc--------------ccCCCceEEE------------Ee-
Q 015220 280 NKKVDFIEQFN-EKL-LVKQENENLQILDVRNFELTEVSRT--------------EFMTPSAFIF------------LY- 330 (411)
Q Consensus 280 ~K~I~FLE~~~-ekl-lIKQe~~~LkI~dL~t~e~~~v~~T--------------~f~hpsAfif------------Ly- 330 (411)
+-=|=.-.-+| |-+ .=++=+..+++||+.-=....+++. +|+.+.|++= .+
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 88877666666 333 4456789999999865333334444 8988888764 11
Q ss_pred --eceeEEEE-ecCeEEEEecCCc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 331 --ENQLFLTF-RNRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 331 --~sqlFlSf-sd~tI~iWn~~Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+..+++|+ .|+-|.+|-.+-. -+-|.-||++ |+..+..-|-||+|+|-+.|+ +|.|||.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-----nVssvlfhp~q~lIlSnsEDk----------sirVwDm 279 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-----NVSSVLFHPHQDLILSNSEDK----------SIRVWDM 279 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccC-----CcceEEecCccceeEecCCCc----------cEEEEec
Confidence 33789999 7889999998833 5679999999 999999999999999999999 9999998
Q ss_pred cceee
Q 015220 405 MFVTC 409 (411)
Q Consensus 405 ~tGk~ 409 (411)
..-++
T Consensus 280 ~kRt~ 284 (1202)
T KOG0292|consen 280 TKRTS 284 (1202)
T ss_pred ccccc
Confidence 76544
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.02 E-value=5.1e-09 Score=106.14 Aligned_cols=254 Identities=17% Similarity=0.160 Sum_probs=165.3
Q ss_pred hccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecc
Q 015220 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~ 191 (411)
--||.-.+|..-|+.--|.|--.-+++. =++.-+ ...|. .+.+++ -++=|-.+|=+ . -..+|..-.
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp--~a~il--lAG~~D-GsvWmw~ip~~--~------~~kv~~Gh~ 190 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHP--RAHIL--LAGSTD-GSVWMWQIPSQ--A------LCKVMSGHN 190 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceE-EEEecc--cccEE--EeecCC-CcEEEEECCCc--c------eeeEecCCC
Confidence 3566677777777776666653333332 223333 23444 445555 23444444321 0 011222100
Q ss_pred c-CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 192 L-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 192 l-~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
. .-- =||= ++||-+.-.-.|++++|||+++.+++..++.. +.-=+.++ +|..+... +.-.++++.+.-+
T Consensus 191 ~~ct~--G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 191 SPCTC--GEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG---NSEGVACGVNNGS 264 (399)
T ss_pred CCccc--cccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec---cCCccEEEEcccc
Confidence 0 000 0222 33888888888999999999999999999943 23334444 55544333 3456788999999
Q ss_pred CcEEeEeee----c-cccCCcceeeeeecce--e---EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee--cee
Q 015220 267 GTVLKSFNH----L-LHRNKKVDFIEQFNEK--L---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE--NQL 334 (411)
Q Consensus 267 G~~L~t~~~----L-L~h~K~I~FLE~~~ek--l---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~--sql 334 (411)
|+++.-++- + -.+...++.+|-.+.. + -+.+=+.+|-|||+.+...+ +.+.|+++++-|-- +..
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R----~~c~he~~V~~l~w~~t~~ 340 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR----HICEHEDGVTKLKWLNTDY 340 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh----eeccCCCceEEEEEcCcch
Confidence 999987661 1 1222334444443332 2 23346789999999998887 67889999886432 456
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++|. .|++|+.||-| |.++.++.||+- .+--.++|||.+++|+.|-|. +-+|++.
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-----~Il~f~ls~~~~~vvT~s~D~----------~a~VF~v 397 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQM-----GILDFALSPQKRLVVTVSDDN----------TALVFEV 397 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCch-----heeEEEEcCCCcEEEEecCCC----------eEEEEec
Confidence 6666 99999999999 999999999999 999999999999999999998 8787763
No 55
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.00 E-value=1.2e-08 Score=111.24 Aligned_cols=205 Identities=19% Similarity=0.186 Sum_probs=170.9
Q ss_pred cceeecccCCCCeEEeeCCCCe------EEEeecCCCeEEEEEeeCceE-EEEeccC-------ceeEEEEe-CCEEEEE
Q 015220 185 ALFESESLKWPGFVEFDDVNGK------VLTYSAQDSIYKVFDLKNYTM-LYSISDK-------NVQEIKIS-PGIMLLI 249 (411)
Q Consensus 185 ~LF~~~~l~~PgfvEFDd~NGk------iLt~~~~ds~ykVWdL~~Ys~-iysLs~~-------~VqeIkIS-dG~~Lai 249 (411)
-+|.++.++-|--+||+-.|.| |++.+..+...+.|++++-+. =+.|... ++..+.+| =|.|..+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I 465 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI 465 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEE
Confidence 3788899999999999988876 689999999999999999876 4555533 88999999 7888877
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfi 327 (411)
+.-. --|.++|+|.|-.-++|-.--.|+.+|--++.-+=+.++-+ -..-|+.||..++.+.. ++--..+.-.
T Consensus 466 G~S~---G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~---~l~l~~~~~~ 539 (910)
T KOG1539|consen 466 GYSK---GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK---SLRLGSSITG 539 (910)
T ss_pred eccC---CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee---eeccCCCcce
Confidence 6543 35899999999999997544578899999988887755544 55679999999999776 5555556666
Q ss_pred EEeec--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 328 FLYEN--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 328 fLy~s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.+|.. .+|... .|-.|++.|-. --.+|-|.||.. .+|....||||..|||.|.|. ||.+||
T Consensus 540 iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~----------tIr~wD 604 (910)
T KOG1539|consen 540 IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDS----------TIRTWD 604 (910)
T ss_pred eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCC----------cEEEEe
Confidence 66655 777777 66699999998 779999999999 999999999999999999998 999999
Q ss_pred ecceeee
Q 015220 404 LMFVTCK 410 (411)
Q Consensus 404 i~tGk~~ 410 (411)
|-||+|+
T Consensus 605 lpt~~lI 611 (910)
T KOG1539|consen 605 LPTGTLI 611 (910)
T ss_pred ccCccee
Confidence 9999987
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2.4e-08 Score=106.70 Aligned_cols=278 Identities=15% Similarity=0.207 Sum_probs=188.1
Q ss_pred cceEEEeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhh
Q 015220 96 SKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (411)
Q Consensus 96 S~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i 175 (411)
.|=.+.=..+..+++-+++|-...+|-+|-.+.=-+-+++- =||+--+=-+-+++++ .||| ++.|.....-+
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfiaRknWiv~----GsDD---~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFIARKNWIVT----GSDD---MQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheeeeccceEEE----ecCC---ceEEEEecccc
Confidence 33444455678899999999999998777665555555443 3455444445567766 6788 88999877666
Q ss_pred hhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe--CCEEEEEE
Q 015220 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS--PGIMLLIF 250 (411)
Q Consensus 176 ~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS--dG~~Lai~ 250 (411)
++=+.-+.-+.|=...-+|| +.-.+| ++++|=++|.||..+ ..+-++-.+| -|++|.+- |-...|..
T Consensus 88 ekV~~FeAH~DyIR~iavHP-------t~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHP-------TLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred eeeEEeeccccceeeeeecC-------CCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 55332122222223344444 333444 457899999999988 5566666655 89999988 33333322
Q ss_pred ecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce----eEEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 251 q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek----llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
.----+|||++..-.+-.| |-||.|-|+.+.-.+.+ |+=...++.+||||.+|..++. |+-+|..-+
T Consensus 160 ---sLDrTVKVWslgs~~~nfT---l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---TLeGHt~Nv 230 (794)
T KOG0276|consen 160 ---SLDRTVKVWSLGSPHPNFT---LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---TLEGHTNNV 230 (794)
T ss_pred ---eccccEEEEEcCCCCCcee---eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---Hhhcccccc
Confidence 2234589999999988888 66999999999988765 5667789999999999999999 999999877
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecC-Cceee--eecccccc--CCCCccceEEEcCC-CCEEEEEecCCCCCccccCC
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFR-GELVT--SFEDHLLW--HPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGN 396 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~--s~e~H~~~--~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~ 396 (411)
.|++.- -|++|+ .|+|+|||+-. =.+-. ++..-..| +..-..++|++--| |.+.|+-|.+.|. -.|..+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~-vsMd~~ 309 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPA-VSMDSN 309 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCc-eeecCC
Confidence 776644 789999 89999999865 11111 22222233 12234567777666 5566777777643 335566
Q ss_pred ceE
Q 015220 397 GKL 399 (411)
Q Consensus 397 gtI 399 (411)
|+|
T Consensus 310 gKI 312 (794)
T KOG0276|consen 310 GKI 312 (794)
T ss_pred ccE
Confidence 755
No 57
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.98 E-value=5.6e-07 Score=85.95 Aligned_cols=271 Identities=12% Similarity=0.120 Sum_probs=155.6
Q ss_pred hccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceee-
Q 015220 112 AQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES- 189 (411)
Q Consensus 112 ~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~- 189 (411)
.++|--.+|+..++..+-.++. ....-...|.++...+.|.+ +.+.. ..+..-.+ . ..|++. +-.+
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv-~~~~~---~~i~~~~~--~--~~g~l~----~~~~~ 76 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYV-GVRPE---FRVLSYRI--A--DDGALT----FAAES 76 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEE-EECCC---CcEEEEEE--C--CCCceE----Eeeee
Confidence 3456667887754322222222 12234556777775554433 33322 22222222 1 112210 0011
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCc----eEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Y----s~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
....+|.++-||..+..+.+.+..++.+.||++.+. +.+..+.. .....+.++ ||.+|++..-..+ .|.||+
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~--~v~v~d 154 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKED--RIRLFT 154 (330)
T ss_pred cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCC--EEEEEE
Confidence 123479999999666667777777999999999743 34444443 367788889 7888877665555 478899
Q ss_pred ecC-CcEEeEe--eeccccCCcceeeeeecc--eeEEeec-CceeeEEEcc--cceEEEeeccccC------CCceE--E
Q 015220 264 IED-GTVLKSF--NHLLHRNKKVDFIEQFNE--KLLVKQE-NENLQILDVR--NFELTEVSRTEFM------TPSAF--I 327 (411)
Q Consensus 264 I~t-G~~L~t~--~~LL~h~K~I~FLE~~~e--kllIKQe-~~~LkI~dL~--t~e~~~v~~T~f~------hpsAf--i 327 (411)
+.+ |++.... ...........-+.++++ ++++..+ ++.|.+||+. +++...+. +.-. +|.+- +
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ-TLDMMPADFSDTRWAADI 233 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE-EEecCCCcCCCCccceeE
Confidence 987 4432110 001122234566888888 5567766 9999999998 34432211 1111 22221 2
Q ss_pred EEeec--eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 328 FLYEN--QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 fLy~s--qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
.+.-+ .+|++- .+++|.+|+.+ |.. -++.+|.... .....+.++|||+.|+..+.. .|+|-+|
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~---------~~~v~v~ 301 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQK---------SHHISVY 301 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEecc--ccCCceEECCCCCEEEEEEcc---------CCcEEEE
Confidence 22222 456665 47899999996 332 3566665532 133468999999999986642 2499999
Q ss_pred ee--cceee
Q 015220 403 LL--MFVTC 409 (411)
Q Consensus 403 ~i--~tGk~ 409 (411)
++ .||++
T Consensus 302 ~~~~~~g~l 310 (330)
T PRK11028 302 EIDGETGLL 310 (330)
T ss_pred EEcCCCCcE
Confidence 77 57765
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-08 Score=108.97 Aligned_cols=190 Identities=17% Similarity=0.193 Sum_probs=146.4
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEe---cCCCceeeEEEEecCCcEEeEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT---KASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q---~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
-|.|-++.--+|++ .-.+..-+||+.|+++..++. |.++-+.-.-|++=.+ .-..-+.|.|++..|++..++|
T Consensus 18 sVd~HPtePw~la~-LynG~V~IWnyetqtmVksfe---V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 18 SVDFHPTEPWILAA-LYNGDVQIWNYETQTMVKSFE---VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred eeecCCCCceEEEe-eecCeeEEEecccceeeeeee---ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 35566665566654 457889999999999986553 3333333333333221 2235688999999999999996
Q ss_pred eeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 274 NHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
. .|.-=|..|++||-.= |-.+.+-.||+||-.++=... .|--+|.--+..++.+ ..|+|. =|+||.||
T Consensus 94 e---AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~--qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 94 E---AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE--QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred e---ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee--eEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 6 6888889999998754 667788999999998864444 2667898888888888 789999 79999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCC--CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq--d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++- ..+.-||++|.- -+|-|--=+-| -.||||+.|. +|||||..|-.|+
T Consensus 169 slgs~~~nfTl~gHek-----GVN~Vdyy~~gdkpylIsgaDD~----------tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 169 SLGSPHPNFTLEGHEK-----GVNCVDYYTGGDKPYLISGADDL----------TIKVWDYQTKSCV 220 (794)
T ss_pred EcCCCCCceeeecccc-----CcceEEeccCCCcceEEecCCCc----------eEEEeecchHHHH
Confidence 998 889999999998 77777544444 4999999999 9999999998875
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.97 E-value=2e-08 Score=108.88 Aligned_cols=190 Identities=14% Similarity=0.199 Sum_probs=150.8
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
-+|=-+..+++.+++.+.+|||+-.+.++|++++..-+...++-||--..+.-..+ --+-|+++-.+.++-+ .-.
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~--Gel~vfdlaS~~l~Et---i~A 452 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKN--GELQVFDLASASLVET---IRA 452 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccC--CceEEEEeehhhhhhh---hhc
Confidence 35556677888999999999999999999999999999999988554333322222 2467788888777777 336
Q ss_pred cCCcceeeeeeccee--EEeecCceeeEEEcccceE-----EE---e--eccccCCCceEEEEeec--eeEEEE--ecCe
Q 015220 279 RNKKVDFIEQFNEKL--LVKQENENLQILDVRNFEL-----TE---V--SRTEFMTPSAFIFLYEN--QLFLTF--RNRT 342 (411)
Q Consensus 279 h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~-----~~---v--~~T~f~hpsAfifLy~s--qlFlSf--sd~t 342 (411)
|.-.|--|...+|+- +-.+.++.+|+||..--.- .+ + .+|+ .-+.-+.++..| +-||.. =|+|
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCe
Confidence 777788888888765 8889999999999854221 11 0 0222 357788999998 555555 8999
Q ss_pred EEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 343 I~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.||-++ -...-||=||.+ -+-.+-||||..+|+.||+|+ ++|||-+-.|.|
T Consensus 532 VkVyflDtlKFflsLYGHkL-----PV~smDIS~DSklivTgSADK----------nVKiWGLdFGDC 584 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKL-----PVLSMDISPDSKLIVTGSADK----------NVKIWGLDFGDC 584 (888)
T ss_pred EEEEEecceeeeeeeccccc-----ceeEEeccCCcCeEEeccCCC----------ceEEeccccchh
Confidence 9999999 888899999999 899999999999999999999 999999999988
No 60
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.95 E-value=7.6e-09 Score=111.03 Aligned_cols=179 Identities=17% Similarity=0.212 Sum_probs=145.9
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
++|++-++--|...+.|.++-||.+-+-.++|.|.+|+=.-..+| ++.| +.+. = -.-+|||-+ |++..+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~-iSgS-W--D~TakvW~~--~~l~~~-- 135 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTL-ISGS-W--DSTAKVWRI--GELVYS-- 135 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCce-Eecc-c--ccceEEecc--hhhhcc--
Confidence 566664444466678899999999999999999999855555555 5552 2221 1 235789976 566666
Q ss_pred eccccCCcceeeeeecceeEE-eecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCC
Q 015220 275 HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~G 350 (411)
+-||+..|..+..++|..++ .+.+..||+|+= ++..+ |.-+|-.-+=.|+.- .-|+|- -|+.|+.|++.|
T Consensus 136 -l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~---tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 136 -LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLK---TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG 209 (745)
T ss_pred -cCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhh---hhccchhheeeeEEecCCCeEeecCCceEEEEeccC
Confidence 88999999999999999854 679999999986 66666 888999999888865 358888 788999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|-+..+.||.. .+.++..+.++++|+|...|. |+.||+..
T Consensus 210 e~l~~~~ghtn-----~vYsis~~~~~~~Ivs~gEDr----------tlriW~~~ 249 (745)
T KOG0301|consen 210 EVLLEMHGHTN-----FVYSISMALSDGLIVSTGEDR----------TLRIWKKD 249 (745)
T ss_pred ceeeeeeccce-----EEEEEEecCCCCeEEEecCCc----------eEEEeecC
Confidence 99999999999 899999999999999999998 99999875
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=1.4e-08 Score=105.47 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=150.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.+|+-|+++.+.+-.+|||+++=.-|+++..+ -|.+++.+ |+.||+...- -.=+|+|++.|+.+..+ +.+
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD---d~v~k~~d~s~a~v~~~---l~~ 151 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD---DKVVKYWDLSTAYVQAE---LSG 151 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC---CceEEEEEcCCcEEEEE---ecC
Confidence 47999999999999999998886667777766 89999999 7887766543 35689999999998666 899
Q ss_pred cCCcceeeeeeccee-EEeec--CceeeEEEcccceEEEeeccccCCC-ceEEEEeeceeEEEEecCeEEEEecC--Cce
Q 015220 279 RNKKVDFIEQFNEKL-LVKQE--NENLQILDVRNFELTEVSRTEFMTP-SAFIFLYENQLFLTFRNRTVAVWNFR--GEL 352 (411)
Q Consensus 279 h~K~I~FLE~~~ekl-lIKQe--~~~LkI~dL~t~e~~~v~~T~f~hp-sAfifLy~sqlFlSfsd~tI~iWn~~--Gel 352 (411)
|.-=|....+++-.= ++-++ ++++++||.++.....+.-. =++| +-++||---++++|-.-+.|+|||+- |-+
T Consensus 152 htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999999999988743 66654 69999999999743332111 2344 44556666699999999999999999 568
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++.+..|.- .+..+...+|+.-|+||+=|. .+|++|+.+=|++
T Consensus 231 l~~~~~H~K-----tVTcL~l~s~~~rLlS~sLD~----------~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 231 LTSMFNHNK-----TVTCLRLASDSTRLLSGSLDR----------HVKVFDTTNYKVV 273 (487)
T ss_pred hhhhhcccc-----eEEEEEeecCCceEeeccccc----------ceEEEEccceEEE
Confidence 888888999 899999999999999999998 9999997766653
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.93 E-value=2.1e-08 Score=99.91 Aligned_cols=185 Identities=14% Similarity=0.163 Sum_probs=136.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
-.||..+.+++.|+++++||+++.+.++....+ -|-.+-.+ +-+|+...+.. =-+||||+-+-+.++++.
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD---~t~kl~D~R~k~~~~t~~--- 172 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD---GTLKLWDIRKKEAIKTFE--- 172 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC---ceEEEEeecccchhhccc---
Confidence 368899999999999999999999999998876 44444455 44444443332 247999999877777642
Q ss_pred ccCCccee--eeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC--
Q 015220 278 HRNKKVDF--IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-- 349 (411)
Q Consensus 278 ~h~K~I~F--LE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-- 349 (411)
-+-++-. ..+..++.+..-=++-||+||+++++..- |+-+|..-++-+..+ ...+|- .|+++++|+.+
T Consensus 173 -~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 173 -NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred -cceeEEEEEecccccceeeccccCceeeeccccCcceE---EeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 1111111 23445555555567889999999999988 888999999999877 445666 99999999998
Q ss_pred --Cce-eeeeccccccCCCCccc--eEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 --GEL-VTSFEDHLLWHPDCNTN--NIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 --Gel-~~s~e~H~~~~~~c~~n--~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+++ |.-|++|.. +=+.| ...=||++..|-.||.|+ .+-+||-.+-.+
T Consensus 249 ~p~~R~v~if~g~~h---nfeknlL~cswsp~~~~i~ags~dr----------~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIH---NFEKNLLKCSWSPNGTKITAGSADR----------FVYVWDTTSRRI 300 (338)
T ss_pred CCCCceEEEeecchh---hhhhhcceeeccCCCCccccccccc----------eEEEeecccccE
Confidence 676 667777765 12222 346789999999999999 888898766443
No 63
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.92 E-value=1.5e-08 Score=103.94 Aligned_cols=254 Identities=15% Similarity=0.158 Sum_probs=185.7
Q ss_pred ehhhhccccceeeecccccEEE--EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCc
Q 015220 108 VFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic--~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~ 185 (411)
++.-++||- |..++|...= +|+-.+|..||++-+..+...+|. .|+.-.+|----+..-++.=+
T Consensus 111 Lltgs~SGE---FtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS-----gD~gG~iKyWqpnmnnVk~~~------ 176 (464)
T KOG0284|consen 111 LLTGSQSGE---FTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS-----GDKGGMIKYWQPNMNNVKIIQ------ 176 (464)
T ss_pred eEeeccccc---EEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE-----cCCCceEEecccchhhhHHhh------
Confidence 344456665 4444443222 678899999999999999999987 344344443332222221100
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEE
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~ 263 (411)
-=.++.++-=. |-. |.-..+.+.+|+++||||...+++=..|+++ +|..+.--|.+=|+.+-...+ ++|+||
T Consensus 177 ahh~eaIRdla---fSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKlWD 250 (464)
T KOG0284|consen 177 AHHAEAIRDLA---FSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKLWD 250 (464)
T ss_pred Hhhhhhhheec---cCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--eeEeec
Confidence 00124444333 333 6667777899999999999999999999988 898888887766666655555 999999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFL 336 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFl 336 (411)
=.+|++|.| |.+|+.-|=-++-.+ ..|+-.++++.+|++|+++ .|.+ +.-+|...+..+.-. .||.
T Consensus 251 prSg~cl~t---lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~----~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 251 PRSGSCLAT---LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF----TYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred CCCcchhhh---hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH----Hhhcchhhheeecccccccccee
Confidence 999999999 889988876666544 4567778999999999995 5555 667789999998654 7898
Q ss_pred EE-ecCeEEEEecCC-ceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 337 TF-RNRTVAVWNFRG-ELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 337 Sf-sd~tI~iWn~~G-el~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
|+ .|+.|-.|...+ +++-.. ..|.. .+-++.--|=|-++.+|++|+ |+++|.
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i~~AHd~-----~iwsl~~hPlGhil~tgsnd~----------t~rfw~ 378 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEIPPAHDG-----EIWSLAYHPLGHILATGSNDR----------TVRFWT 378 (464)
T ss_pred eccCCCceEEEeccccccccCCCccccc-----ceeeeeccccceeEeecCCCc----------ceeeec
Confidence 88 999999999983 344433 35555 888999999999999999999 888774
No 64
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.92 E-value=4.2e-09 Score=108.03 Aligned_cols=183 Identities=14% Similarity=0.147 Sum_probs=141.5
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeCc--eEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
=-+.||-|+..++.+.+..|+..+. +.|.+--|.-|..++.| +|+.++.++. -..||+|...---+... --
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnnVk~~---~a 177 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNNVKII---QA 177 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCC---CceEEecccchhhhHHh---hH
Confidence 3578999999999999999999664 35555556699999999 8888776654 47899998764333332 22
Q ss_pred ccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---eceeEEEE-ecCeEEEEecC-C
Q 015220 278 HRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQLFLTF-RNRTVAVWNFR-G 350 (411)
Q Consensus 278 ~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~sqlFlSf-sd~tI~iWn~~-G 350 (411)
||.-.|.-++.+ .+|-+=.++++.|+|||.+..+.-.|- -+|-.-+-+++ +..+.+|| .|++|.+||++ |
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee---ccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 444566666666 345678899999999999886554322 33444444554 55788888 89999999999 9
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+-++|+-+|.. .+-.+-.++++-+|.++|+|. +++|+||.|=
T Consensus 255 ~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD~----------~~kv~DiR~m 296 (464)
T KOG0284|consen 255 SCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKDQ----------SCKVFDIRTM 296 (464)
T ss_pred chhhhhhhccc-----eEEEEEEcCCCCeeEEccCCc----------eEEEEehhHh
Confidence 99999999999 777888999999999999999 9999999853
No 65
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=3.4e-08 Score=105.74 Aligned_cols=216 Identities=15% Similarity=0.172 Sum_probs=158.0
Q ss_pred CceeeeEeeehhhhhhCCCCCCCcceeecc---cC-C---CCeEEeeCC-------------------CCeEEEeecCCC
Q 015220 162 FSSLRCRSTRIEYIRRGKPDAGFALFESES---LK-W---PGFVEFDDV-------------------NGKVLTYSAQDS 215 (411)
Q Consensus 162 ~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~---l~-~---PgfvEFDd~-------------------NGkiLt~~~~ds 215 (411)
+..-+|..+++-....+....++.||+..+ |+ | -+.-||-++ ||+.|++++.|.
T Consensus 16 ~e~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 16 NEKQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hhhhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 344677788877777777767778888632 11 1 122233233 789999999999
Q ss_pred eEEEEEeeCc--eEEEEeccC--ceeEEEE-eCCEEEEEEecCCCceeeEEEEecCC--cEEeEee-----ecc-ccCCc
Q 015220 216 IYKVFDLKNY--TMLYSISDK--NVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDG--TVLKSFN-----HLL-HRNKK 282 (411)
Q Consensus 216 ~ykVWdL~~Y--s~iysLs~~--~VqeIkI-SdG~~Lai~q~t~~~ipiKIl~I~tG--~~L~t~~-----~LL-~h~K~ 282 (411)
|+|||+-.-. -++-+|-.| =|+-+.+ -....|+.+-+=.. -|+||+|.+| +++++|+ .+- |++-+
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~--~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR--KIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCc--cEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 9999998776 566666644 5676666 23333333333222 4799999999 7888777 344 89999
Q ss_pred ceeeeeecceeEEeecC--ceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeee
Q 015220 283 VDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 283 I~FLE~~~ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s 355 (411)
|+.++.-+-+-+|.++| .-|++||.++++.+- -+-+|..-+=.|-.+ +-.||. ||+||++||+. --=++|
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee
Confidence 99999998888777765 459999999988776 455899999888877 556777 99999999999 445568
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+.-|.- -+=+++.+|+=+.+.||..|.
T Consensus 251 ~~vH~e-----~VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 251 YIVHKE-----GVWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred EEeccC-----ceEEEeeCCCcceEEecCCCC
Confidence 888876 466667778889999998886
No 66
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.5e-08 Score=102.26 Aligned_cols=228 Identities=14% Similarity=0.138 Sum_probs=165.0
Q ss_pred CCceeeeEeeehhhhhhCCCCCCCccee----e-----cccCCCCeEE--eeCCCCeEEEeecCCCeEEEEEeeCceEEE
Q 015220 161 NFSSLRCRSTRIEYIRRGKPDAGFALFE----S-----ESLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLY 229 (411)
Q Consensus 161 ~~s~L~cr~~~~~~i~~gk~~~~~~LF~----~-----~~l~~PgfvE--FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy 229 (411)
.+..=-|.++.-+|+..+.+... .|+- . -+.+=||=|- =++++|.-|+.+.-.+.+-+|.|.+..+|+
T Consensus 39 ~a~~~sl~~l~~~yllsaq~~rp-~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~ 117 (476)
T KOG0646|consen 39 LAQAASLTALNNEYLLSAQLKRP-LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN 117 (476)
T ss_pred cccchhhhhhchhheeeecccCc-cccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH
Confidence 44444445555566665554322 1111 1 2344465553 478899999988788889999999999999
Q ss_pred EeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec-------CCcEEeEeeeccccCCcceeeeeecc----eeEE
Q 015220 230 SISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-------DGTVLKSFNHLLHRNKKVDFIEQFNE----KLLV 295 (411)
Q Consensus 230 sLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-------tG~~L~t~~~LL~h~K~I~FLE~~~e----kllI 295 (411)
.++.| .|.-+++| ||.++.++..-. -+.+|.+- |+ -.+.+.++-+|.-+|-=|++.++ +++=
T Consensus 118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg---~V~vW~l~~lv~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGSHIITGSKDG---AVLVWLLTDLVSADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred HHHhhccceeEEEEeCCCcEEEecCCCc---cEEEEEEEeecccccCC-CccceeeeccCcceeEEEEecCCCccceEEE
Confidence 99888 89999999 888877765443 45667664 22 23333346689999999998777 7789
Q ss_pred eecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEe-----------------cCCceee
Q 015220 296 KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWN-----------------FRGELVT 354 (411)
Q Consensus 296 KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn-----------------~~Gel~~ 354 (411)
.++++.+|+|||-.|.+.. |. -.|++..+++.. ..|+=-++|.|-+-+ +.|+-..
T Consensus 194 aS~D~t~k~wdlS~g~LLl---ti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 194 ASEDRTIKLWDLSLGVLLL---TI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred ecCCceEEEEEeccceeeE---EE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999999999998885 33 367777776654 333333777665544 4455677
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|.||.. .-++..++|+-||-+|+||++|. ++-|||+.+-.|+
T Consensus 270 ~~~Gh~~---~~~ITcLais~DgtlLlSGd~dg----------~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 270 VLVGHEN---ESAITCLAISTDGTLLLSGDEDG----------KVCVWDIYSKQCI 312 (476)
T ss_pred eeccccC---CcceeEEEEecCccEEEeeCCCC----------CEEEEecchHHHH
Confidence 8999987 24788899999999999999996 9999999887765
No 67
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.5e-09 Score=115.27 Aligned_cols=184 Identities=14% Similarity=0.207 Sum_probs=142.3
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
.+|.++-++.+.....|...---.+-+++.+ -|..++++....|+-.-.+.. -||+|||+.++++++ |.||..
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsasg--tiK~wDleeAk~vrt---Ltgh~~ 113 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASG--TIKVWDLEEAKIVRT---LTGHLL 113 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCC--ceeeeehhhhhhhhh---hhcccc
Confidence 3455665655555555555444444455544 788888884444433322222 589999999999999 999999
Q ss_pred cceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceee
Q 015220 282 KVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVT 354 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~ 354 (411)
++--+.-++-+-+.++ -+-+++|||.+..-+.. +..+|+..+-.+..+ ....++ .|.+++|||+. |++..
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK 190 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc
Confidence 9988887777778855 46789999999777777 888899999998877 567777 77999999998 99999
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|+.|.. .+..+-.-|-.=++-+|+.|+ |++.||++|=+++
T Consensus 191 ef~~~e~-----~v~sle~hp~e~Lla~Gs~d~----------tv~f~dletfe~I 231 (825)
T KOG0267|consen 191 EFKSHEG-----KVQSLEFHPLEVLLAPGSSDR----------TVRFWDLETFEVI 231 (825)
T ss_pred ccccccc-----cccccccCchhhhhccCCCCc----------eeeeeccceeEEe
Confidence 9999987 777776777778999999999 9999999986654
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=1.3e-07 Score=98.41 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=137.3
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC-cEE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG-TVL 270 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG-~~L 270 (411)
-++-|..-++.+|+++.+|+..|+||+.+-..++.|+++ -|-...++ +++|++++.=-+. |++||+-+- ...
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~---vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK---VRLWDTRSLTSRV 190 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce---EEEEEeccCCcee
Confidence 378899999999999999999999999996668899977 68888888 6688888765553 899999877 777
Q ss_pred eEeeeccccCCcceeeeeecceeEEee-cCceeeEEEcccceEEEeeccccC-CCceEEEEeec---eeEEEE-ecCeEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYEN---QLFLTF-RNRTVA 344 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~-hpsAfifLy~s---qlFlSf-sd~tI~ 344 (411)
.+ |-|--||+-+--.+++.+|++ +|+.+|+|||-+|-... |.++ |-.++.||... +-++|+ =|+.++
T Consensus 191 ~e----lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll---~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 191 VE----LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL---TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred EE----ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh---hhhhcccceEEEEEeecCCceEeecccccceE
Confidence 77 456789998888888555555 88999999999877666 6666 99999998754 567777 899999
Q ss_pred EEecC-Cceee--eeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 345 VWNFR-GELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 345 iWn~~-Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|+|.. =..+- ++-+- +=++++|||.+.++-|=.+
T Consensus 264 Vfd~t~~Kvv~s~~~~~p--------vLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWKYPGP--------VLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEccceEEEEeeecccc--------eeeEEecCCCceEEEeccc
Confidence 99944 33333 33333 4489999999999988544
No 69
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.89 E-value=5.3e-09 Score=108.64 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=134.0
Q ss_pred eeCceEEEEeccC--ceeEEEEeC--CEEEEEEecCCCceeeEEEEecC-CcEEeEeeeccccCCcceeeeeeccee--E
Q 015220 222 LKNYTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKL--L 294 (411)
Q Consensus 222 L~~Ys~iysLs~~--~VqeIkISd--G~~Lai~q~t~~~ipiKIl~I~t-G~~L~t~~~LL~h~K~I~FLE~~~ekl--l 294 (411)
+-+-+++.+++++ -|..+++.+ |++||. -... -=||||++=+ |.++.| .+||+|+|.-+...+++. |
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS-~gmD--~~vklW~vy~~~~~lrt---f~gH~k~Vrd~~~s~~g~~fL 274 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLS-GGMD--GLVKLWNVYDDRRCLRT---FKGHRKPVRDASFNNCGTSFL 274 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEe-cCCC--ceEEEEEEecCcceehh---hhcchhhhhhhhccccCCeee
Confidence 3355678888887 899999995 554443 3333 3478999987 999999 789999999999999988 6
Q ss_pred EeecCceeeEEEcccceEEE------eeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCC
Q 015220 295 VKQENENLQILDVRNFELTE------VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (411)
Q Consensus 295 IKQe~~~LkI~dL~t~e~~~------v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c 366 (411)
=.+=+-.||+||+-||+... ++..+.+||.- .++||++ +|++|+-||.| |++|.....|++
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~------~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg----- 343 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN------QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG----- 343 (503)
T ss_pred eeecceeeeeeccccceEEEEEecCCCceeeecCCCC------CcEEEEecCCCcEEEEeccchHHHHHHHhhhh-----
Confidence 66778999999999998765 55566666665 6899999 99999999999 999999999999
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
-+++|-.=++|.--||.|.|+ ++.||+..++-
T Consensus 344 ~i~~i~F~~~g~rFissSDdk----------s~riWe~~~~v 375 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDK----------SVRIWENRIPV 375 (503)
T ss_pred heeeeEEccCCceEeeeccCc----------cEEEEEcCCCc
Confidence 889998899999999999998 99999987763
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.88 E-value=1.3e-07 Score=99.72 Aligned_cols=195 Identities=7% Similarity=0.048 Sum_probs=157.6
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE----EeccCceeEEEEe-CCEEEE-EEecCCCceeeEEEEecC
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY----SISDKNVQEIKIS-PGIMLL-IFTKASGHVPLKILSIED 266 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy----sLs~~~VqeIkIS-dG~~La-i~q~t~~~ipiKIl~I~t 266 (411)
.||--|-==-|+|.-++++-..+.+||||-.+-+.+. +.=.-.|.+|.-+ ||+=++ +.+.... .-.++-..+
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer--fg~~F~~DS 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER--FGHVFLWDS 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc--eeEEEEecC
Confidence 3444444445789989998899999999988865442 2223477888888 776554 4555444 888999999
Q ss_pred CcEEeEeeeccccCCcceeeeeeccee---EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-e
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNEKL---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-R 339 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~ekl---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-s 339 (411)
|.-+.+ +-||++.|+...+-+..= .--++++.+-++ .|-+++...|.-.|..-+.++-++ +.|+|. +
T Consensus 137 G~SvGe---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 137 GNSVGE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred CCccce---eeccceeEeeeeccCCCceEEEeccCCCeEEEe---eCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence 999999 779999999888766643 334566666555 488888888999999988888888 889998 9
Q ss_pred cCeEEEEecC-Cceeeeec---cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVTSFE---DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e---~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|++|-+||=. ||.|.-|+ .|.+ .+-.+.-|||+.-+.+.|+|+ |+||||..|++|+
T Consensus 211 Dgki~iyDGktge~vg~l~~~~aHkG-----sIfalsWsPDs~~~~T~SaDk----------t~KIWdVs~~slv 270 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKVGELEDSDAHKG-----SIFALSWSPDSTQFLTVSADK----------TIKIWDVSTNSLV 270 (603)
T ss_pred CccEEEEcCCCccEEEEecCCCCccc-----cEEEEEECCCCceEEEecCCc----------eEEEEEeeccceE
Confidence 9999999999 99999999 8999 899999999999999999999 9999999999985
No 71
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.4e-08 Score=108.74 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=153.7
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEe
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I 264 (411)
||+.+-+=-| +-|-+..=-||+ +.+.+.+..||++=.++|-.--+| -|--|-.-+.|=|.++-+-. .-||||+.
T Consensus 5 fEskSsRvKg-lsFHP~rPwILt-slHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD--ykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKSSRVKG-LSFHPKRPWILT-SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD--YKIKVWNY 80 (1202)
T ss_pred hhcccccccc-eecCCCCCEEEE-eecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCc--cEEEEEec
Confidence 5554444322 456666666776 467899999999999999666655 67777777777777766544 55899999
Q ss_pred cCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee---ceeEEEE-
Q 015220 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE---NQLFLTF- 338 (411)
Q Consensus 265 ~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~---sqlFlSf- 338 (411)
.+-+++-| |+||--=|..+.-|+||= +=++.+..|+|||.+++.++. ++.+|---+.|... -.+-+|.
T Consensus 81 k~rrclft---L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia---vltGHnHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 81 KTRRCLFT---LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA---VLTGHNHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ccceehhh---hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE---EEecCceEEEeeccCCccceEEEec
Confidence 99999999 999999999999999996 667899999999999999999 88889888887553 3677788
Q ss_pred ecCeEEEEecCCceee------------------------------eeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 339 RNRTVAVWNFRGELVT------------------------------SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~------------------------------s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
=|.||||||..|=... -||||-- -+|-++.-|+=-+|+||+.|+
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-----GVNwaAfhpTlpliVSG~DDR- 228 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-----GVNWAAFHPTLPLIVSGADDR- 228 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-----ccceEEecCCcceEEecCCcc-
Confidence 7999999997653222 3455555 678889999999999999999
Q ss_pred CCccccCCceEEEeeec
Q 015220 389 DDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~ 405 (411)
-||+|-..
T Consensus 229 ---------qVKlWrmn 236 (1202)
T KOG0292|consen 229 ---------QVKLWRMN 236 (1202)
T ss_pred ---------eeeEEEec
Confidence 89999654
No 72
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.84 E-value=2.7e-08 Score=106.88 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=134.2
Q ss_pred CeEEEeecCCCeEEEEEeeCceEE--EEec-cCceeEEEE----eCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYTML--YSIS-DKNVQEIKI----SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys~i--ysLs-~~~VqeIkI----SdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
+.-+++.+.|+++|||+-+.-+-+ -.+. ++.+-..++ |++--|.++..-+... ||.+.++.++.+ |-
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~---v~~~~~~~P~~~---Lk 98 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII---VFKLSQAEPLYT---LK 98 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE---EEecCCCCchhh---hh
Confidence 334677777999999998764433 2333 234444433 3343344444444444 999999999999 88
Q ss_pred ccCCcceeeeeecceeEEe-ecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCCcee
Q 015220 278 HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRGELV 353 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIK-Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~Gel~ 353 (411)
||+..|=.+.+.++..+|- +=+.+.++|= .++... ++-+|++++-++..= +.|+|+ .|++|++|+= |.++
T Consensus 99 gH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~---~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l 172 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVY---SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLL 172 (745)
T ss_pred ccccceeeeecCCcCceEecccccceEEec--chhhhc---ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchh
Confidence 9999999999999999444 4578999994 345554 688899988776632 699999 9999999987 9999
Q ss_pred eeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+||.+|-. .+..+++=+|.-+ +|+++|- .|+.||+ +|+|+
T Consensus 173 ~tf~gHtD-----~VRgL~vl~~~~f-lScsNDg----------~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 173 KTFSGHTD-----CVRGLAVLDDSHF-LSCSNDG----------SIRLWDL-DGEVL 212 (745)
T ss_pred hhhccchh-----heeeeEEecCCCe-EeecCCc----------eEEEEec-cCcee
Confidence 99999998 7888998888765 5888885 9999999 99886
No 73
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.81 E-value=4.9e-07 Score=93.75 Aligned_cols=259 Identities=14% Similarity=0.157 Sum_probs=183.3
Q ss_pred EEEeeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhC
Q 015220 99 IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (411)
Q Consensus 99 ~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~g 178 (411)
..|..+.+.|+..-.---.-.||..+|+.+-.+ +++.-.|-++-||+.++.+|+.|+-.-.+ .-+.+..
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~-----vws~~~~----- 293 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKDLDTVITASADEIIR-----VWSVPLS----- 293 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccchhheeecCCcceEE-----eeccccc-----
Confidence 344555566665555555567888888876655 56666789999999999999987543111 1111110
Q ss_pred CCCCCCcceeecccCCCCeEEe--eCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-CCEEEEEEe
Q 015220 179 KPDAGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFT 251 (411)
Q Consensus 179 k~~~~~~LF~~~~l~~PgfvEF--Dd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-dG~~Lai~q 251 (411)
..| +.+..|-+=|-| -.++|+-|++...|++|-+-|+.+.+.|-..+++ ++....+- ||.++.++.
T Consensus 294 ----s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 294 ----SEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ----cCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 000 011111111221 3578999999999999999999999999888886 56666776 998877765
Q ss_pred cCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEE-eeccccCCCceEEE
Q 015220 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIF 328 (411)
Q Consensus 252 ~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfif 328 (411)
+. .-+|||++..+..... +=||..||-.|.-...+- -...++..+++|||++-+-++ +....+ .+-.=+.
T Consensus 367 ~d---~~vkiwdlks~~~~a~---Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~-~~v~s~~ 439 (506)
T KOG0289|consen 367 PD---GVVKIWDLKSQTNVAK---FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK-KEVNSLS 439 (506)
T ss_pred CC---ceEEEEEcCCcccccc---CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc-ccceeEE
Confidence 43 5699999999997776 447999999888776554 445577779999999987666 222222 1344455
Q ss_pred EeeceeEEEEecCeEEEEecC-----CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 329 LYENQLFLTFRNRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 329 Ly~sqlFlSfsd~tI~iWn~~-----Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+..+..||.....++.||-+. =..+..|.+|.+ -.+.|...++-++++|+|.|+
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg-----~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG-----LSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccccceeeehhhhccc-----ccceeeecccceEEeeccchh
Confidence 666777777778888888887 126678999997 788999999999999999998
No 74
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=3.9e-08 Score=101.89 Aligned_cols=177 Identities=16% Similarity=0.103 Sum_probs=140.5
Q ss_pred ecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee
Q 015220 211 SAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE 287 (411)
+.+..+..||||+|.+.+.+-..- ..+.-... ++-+||..|-+.+ .|.+|.+.--...+. ..--.-||..|.
T Consensus 14 S~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp--~l~vw~i~k~~~~~q---~~v~Pg~v~al~ 88 (476)
T KOG0646|consen 14 SFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRP--LLHVWEILKKDQVVQ---YIVLPGPVHALA 88 (476)
T ss_pred CCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCc--cccccccCchhhhhh---hcccccceeeee
Confidence 445667999999999988777755 33333333 6678888888888 677888875555441 111124688999
Q ss_pred eeccee-EEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC----------Cc
Q 015220 288 QFNEKL-LVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR----------GE 351 (411)
Q Consensus 288 ~~~ekl-lIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~----------Ge 351 (411)
-+|++. +++. +..+|-||-|.+|++.. +.-.|=..+.+|-.+ ..|+|+ .|+-|.+|.+- -.
T Consensus 89 s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 89 SSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred cCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 999998 6677 89999999999999998 667788999998877 678888 99999999862 34
Q ss_pred eeeeeccccccCCCCccceEEEcCCC--CEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dq--d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++.|.+|-+ .+..++|++-| -.+++.|.|. ||++||+.+|+++
T Consensus 166 p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS~D~----------t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 166 PLHIFSDHTL-----SITDLQIGSGGTNARLYTASEDR----------TIKLWDLSLGVLL 211 (476)
T ss_pred ceeeeccCcc-----eeEEEEecCCCccceEEEecCCc----------eEEEEEeccceee
Confidence 8889999999 89999999875 4578888888 9999999999986
No 75
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.80 E-value=9.1e-08 Score=98.51 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=139.5
Q ss_pred ccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEEEE----------eccCceeEEEEe-----CCEEEEEEec
Q 015220 191 SLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----------ISDKNVQEIKIS-----PGIMLLIFTK 252 (411)
Q Consensus 191 ~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys----------Ls~~~VqeIkIS-----dG~~Lai~q~ 252 (411)
.+.|||=| -+=.-|-.|++.....+.+-|||+..+.-... |.+++=..--+| .|.+| .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll----s 195 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL----S 195 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe----e
Confidence 35566643 24456778899888899999999999875543 333311122233 33322 2
Q ss_pred CCCceeeEEEEecCCcE----EeEeeeccccCCcceeeee--ecceeEE-eecCceeeEEEcccceEEEeeccccCCCce
Q 015220 253 ASGHVPLKILSIEDGTV----LKSFNHLLHRNKKVDFIEQ--FNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSA 325 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~----L~t~~~LL~h~K~I~FLE~--~~ekllI-KQe~~~LkI~dL~t~e~~~v~~T~f~hpsA 325 (411)
.+.--.+-+|+|..... +......=+|...|+=++- +++.+|. -.++..|.|||++++ .-+...+.-.|+..
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAE 274 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCc
Confidence 33445688899984433 3333445577777765443 3455533 358999999999975 44455699999999
Q ss_pred EEEEeec----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCc
Q 015220 326 FIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNG 397 (411)
Q Consensus 326 fifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~g 397 (411)
+.+|..| .+++|+ +|+||++||+| -..+-+|++|.. ++..|--||.-+.+. |.+.|.
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-----ev~~V~WSPh~etvLASSg~D~---------- 339 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED-----EVFQVEWSPHNETVLASSGTDR---------- 339 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc-----ceEEEEeCCCCCceeEecccCC----------
Confidence 9999988 889999 69999999999 568889999999 999999999988654 555555
Q ss_pred eEEEeeec
Q 015220 398 KLFVSLLM 405 (411)
Q Consensus 398 tI~i~~i~ 405 (411)
.++|||+.
T Consensus 340 rl~vWDls 347 (422)
T KOG0264|consen 340 RLNVWDLS 347 (422)
T ss_pred cEEEEecc
Confidence 99999985
No 76
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.78 E-value=1.6e-07 Score=94.06 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=142.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce------------EEEEeccCceeEEEEe--------CCEEEEEEecCCCce
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT------------MLYSISDKNVQEIKIS--------PGIMLLIFTKASGHV 257 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys------------~iysLs~~~VqeIkIS--------dG~~Lai~q~t~~~i 257 (411)
..-|.+-|+-++++++|+.+-||||++-+ ++.--.++++....|+ .|||. .+ .=-=
T Consensus 49 L~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt-ss---SFDh 124 (397)
T KOG4283|consen 49 LQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT-SS---SFDH 124 (397)
T ss_pred eeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee-cc---cccc
Confidence 35789999999999999999999999854 2222234566666666 35542 11 1123
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeeeec--cee-EEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKL-LVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekl-lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s 332 (411)
++||||-.|-|...+|+.- -.|+--+.++ -++ ||+- .+.++++-|+.+|..-- |+=+|...+.++--+
T Consensus 125 tlKVWDtnTlQ~a~~F~me----~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKME----GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVEWS 197 (397)
T ss_pred eEEEeecccceeeEEeecC----ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEEec
Confidence 7999999999999998831 2222222222 222 5554 78999999999999888 999999999999877
Q ss_pred ----eeEEEE-ecCeEEEEecC--CceeeeeccccccC---------CCCccceEEEcCCCCEEEEEecCCCCCccccCC
Q 015220 333 ----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWH---------PDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (411)
Q Consensus 333 ----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~---------~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~ 396 (411)
=++.|+ .|+.|++||.+ .--++.|..|..-. -+-.+|.++-|+||+.+.+...|+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~--------- 268 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD--------- 268 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc---------
Confidence 457788 89999999999 34677888887321 223568899999999999999999
Q ss_pred ceEEEeeeccee
Q 015220 397 GKLFVSLLMFVT 408 (411)
Q Consensus 397 gtI~i~~i~tGk 408 (411)
.|.+|+-+.|.
T Consensus 269 -r~r~wn~~~G~ 279 (397)
T KOG4283|consen 269 -RIRVWNMESGR 279 (397)
T ss_pred -ceEEeecccCc
Confidence 89999998885
No 77
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.78 E-value=9e-08 Score=98.29 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=120.0
Q ss_pred hhCCCCCCCcceee---cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEec
Q 015220 176 RRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK 252 (411)
Q Consensus 176 ~~gk~~~~~~LF~~---~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~ 252 (411)
+.|++++..|+|+. -.|- +.+|.-|.-+++++++|.+++||..-.--+...++
T Consensus 66 k~Gr~d~~~P~v~GHt~~vLD----i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------- 121 (472)
T KOG0303|consen 66 KTGRMDASYPLVCGHTAPVLD----IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------- 121 (472)
T ss_pred cccccCCCCCCccCccccccc----cccCccCCceeecCCCCceEEEEECCCcccccCcc--------------------
Confidence 67999999999986 2222 56788899999999999999999764322222222
Q ss_pred CCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee---EEeecCceeeEEEcccceEEEeeccccCCCceEEEE
Q 015220 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL 329 (411)
++.+. |-||++.|--++-|+--. +=+..++.++|||+.|||... |+. ||.-+...
T Consensus 122 ---------------epvv~---L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~ 179 (472)
T KOG0303|consen 122 ---------------EPVVE---LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSM 179 (472)
T ss_pred ---------------cceEE---EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEE
Confidence 33344 789999999999887543 445578899999999999887 777 99999888
Q ss_pred eec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 330 YEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 330 y~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
..| .+|.|- +|++|||||++ |++|..-..|.+-. ....|++ .||++.-.|
T Consensus 180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k---~~Raifl-~~g~i~tTG 234 (472)
T KOG0303|consen 180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK---PARAIFL-ASGKIFTTG 234 (472)
T ss_pred EeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC---cceeEEe-ccCceeeec
Confidence 877 778888 99999999999 99999777787732 2344554 577744444
No 78
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.76 E-value=9.3e-08 Score=96.33 Aligned_cols=193 Identities=16% Similarity=0.263 Sum_probs=149.5
Q ss_pred CCCCeEEEeecCCCeEEEEEee---------------Cc---eEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLK---------------NY---TMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~---------------~Y---s~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKI 261 (411)
.++|-.++-++.|-.+|++|.. +. -.|++|-|+ +|..+..-|.--++++.-..+ -+|+
T Consensus 121 s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~--tvKl 198 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN--TVKL 198 (430)
T ss_pred CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC--eEEE
Confidence 4678888888889999999987 11 257888887 888888885443444433333 4799
Q ss_pred EEecCCcEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEE
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFL 336 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFl 336 (411)
||+.--..-+.|+ -+--.-||..|--+ +|.+|+.-+-..+++||+.|-+.+.-++....|..|+..+.+| .+|+
T Consensus 199 FDfsK~saKrA~K-~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv 277 (430)
T KOG0640|consen 199 FDFSKTSAKRAFK-VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV 277 (430)
T ss_pred EecccHHHHHHHH-HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEE
Confidence 9987443333333 22333445555444 5667888888899999999999999888999999999999988 8999
Q ss_pred EE-ecCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeeeC
Q 015220 337 TF-RNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI 411 (411)
Q Consensus 337 Sf-sd~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~~ 411 (411)
|. .||-|++||== +.-++|+.. |-+ -++-+.-.|.+|+.|.|-.+|. ++|+|.|.||.|++
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~g----sevcSa~Ftkn~kyiLsSG~DS----------~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGG----SEVCSAVFTKNGKYILSSGKDS----------TVKLWEISTGRMLK 341 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCC----ceeeeEEEccCCeEEeecCCcc----------eeeeeeecCCceEE
Confidence 99 99999999977 667778864 444 5788899999999999999999 99999999999874
No 79
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=3.2e-06 Score=83.85 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=152.3
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeC---ceEEEEecc---CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSISD---KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~---Ys~iysLs~---~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
+|-+-...|++|+++++|+.+|+|++.. +++.-.|.+ .-|-+|+-| .|..||...=- .-.-||.=++|+-
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---ATVVIWKKEDGEF 95 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---ceEEEeecCCCce
Confidence 4555555699999999999999999994 667666653 289999999 88888876544 3456888887765
Q ss_pred EeEeeeccccCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceE---EEEeeceeEEEE-ecCeE
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAF---IFLYENQLFLTF-RNRTV 343 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAf---ifLy~sqlFlSf-sd~tI 343 (411)
..... |=||-.||-.++-+.++-+++ +.+...=||-+..++-++...-+-.|..-+ ++=.+..|++|. =|+||
T Consensus 96 ecv~~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI 174 (312)
T KOG0645|consen 96 ECVAT-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI 174 (312)
T ss_pred eEEee-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE
Confidence 55333 779999999999998887776 589999999999888888666666666544 333455888998 79999
Q ss_pred EEEecC-Cc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 344 AVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 344 ~iWn~~-Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
++|... ++ ++.+|++|-. .+=.++..++|+-++|++.|. |++||-..|
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~-----TVW~~~F~~~G~rl~s~sdD~----------tv~Iw~~~~ 226 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHEN-----TVWSLAFDNIGSRLVSCSDDG----------TVSIWRLYT 226 (312)
T ss_pred EEEeecCCCCeeEEEEecCccc-----eEEEEEecCCCceEEEecCCc----------ceEeeeecc
Confidence 999988 55 8889999988 677888999999999999997 999997543
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2.2e-07 Score=91.57 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=142.3
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|-..+.+.-+++.+..|+++|+||+.- -++|.....+ ||.++--. ++.-++++ .=---||||+-.-++-+.|
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEe
Confidence 345677888999999999999999765 4488777755 88888777 55545554 2223589999999999999
Q ss_pred eeeccccCCcceeeeeecce---eEEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec----eeEEEE-ecCeE
Q 015220 273 FNHLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTV 343 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI 343 (411)
|+ ||+.-|+-..-++-- ..=.+++..++|||++.. +.+.++ .|.+...+-.-+ .+++|+ .|++|
T Consensus 143 f~---gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~----ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 143 FN---GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE----AHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred ec---CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE----eccceeEeecccccCCcEEEecCCCceE
Confidence 55 788888755544432 244568999999999984 443332 255566665544 778999 99999
Q ss_pred EEEecC--CceeeeeccccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 344 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 344 ~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++||++ -.++--|.+|.+ .+..|.-||- -++|.|+|-|- |..|||.+.+.
T Consensus 216 r~wDir~~r~pl~eL~gh~~-----AVRkvk~Sph~~~lLaSasYDm----------T~riw~~~~~d 268 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGL-----AVRKVKFSPHHASLLASASYDM----------TVRIWDPERQD 268 (311)
T ss_pred EEEehhhccccceeecCCce-----EEEEEecCcchhhHhhhccccc----------eEEecccccch
Confidence 999999 668889999999 9999999996 57899999998 99999998653
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.70 E-value=1.9e-07 Score=92.02 Aligned_cols=184 Identities=17% Similarity=0.242 Sum_probs=140.6
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce-EEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys-~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
-|.|+.-..++|| +++++.+|||||+-=+ +.-++.++ -|..+-.+ |..+|-. ...=-+.+||..||++..
T Consensus 105 ~~af~~ds~~llt-gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS----add~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 105 AVAFSQDSNYLLT-GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS----ADDKTVRLWDHRTGTEVQ 179 (334)
T ss_pred eEEecccchhhhc-cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee----ccCCceEEEEeccCcEEE
Confidence 3678777666665 7889999999998755 66666655 66666666 6665432 222348999999999999
Q ss_pred EeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---eceeEEEE-ecCeEEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQLFLTF-RNRTVAVW 346 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~sqlFlSf-sd~tI~iW 346 (411)
++.+ +.+|..+|++.|+. +...-+..++-||..+-+..+ .. .-|.-+-..- ..+.|+.+ .|..+..+
T Consensus 180 sL~~----~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK---s~-k~P~nV~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 180 SLEF----NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK---SY-KMPCNVESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred EEec----CCCCcceeeccCCCEEEEecCceeEEecccccccee---ec-cCccccccccccCCCceEEecCcceEEEEE
Confidence 9553 57899999999987 455688999999999988776 11 1233222211 23778888 88899999
Q ss_pred ecC-Cceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~-Gel~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|++ |+-+-++ .||-+ -+-.|-.||||++-.|||.|- ||.||.---||
T Consensus 252 Dy~TgeEi~~~nkgh~g-----pVhcVrFSPdGE~yAsGSEDG----------TirlWQt~~~~ 300 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFG-----PVHCVRFSPDGELYASGSEDG----------TIRLWQTTPGK 300 (334)
T ss_pred eccCCceeeecccCCCC-----ceEEEEECCCCceeeccCCCc----------eEEEEEecCCC
Confidence 999 9988887 88988 888999999999999999995 99999877665
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.68 E-value=1.9e-06 Score=85.56 Aligned_cols=185 Identities=18% Similarity=0.169 Sum_probs=142.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+.+|-.|-+++-|++..||.--|.+-|=+..+| -|=.+-|. +.--|++...- ..+||||.+||+.+.++..
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD---~t~kLWDv~tGk~la~~k~--- 92 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD---QTAKLWDVETGKQLATWKT--- 92 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecccc---ceeEEEEcCCCcEEEEeec---
Confidence 357888899999999999999999999888888 78888888 55555555443 4589999999999998553
Q ss_pred cCCcceeeeeeccee-EEee------cCceeeEEEcc-------cceEEEeeccccCCCceEEEEeec--eeEEEE-ecC
Q 015220 279 RNKKVDFIEQFNEKL-LVKQ------ENENLQILDVR-------NFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNR 341 (411)
Q Consensus 279 h~K~I~FLE~~~ekl-lIKQ------e~~~LkI~dL~-------t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~ 341 (411)
..+|.-++-..++- .+.. -..-+-++|++ +.|++.+-.|-- +++..++.-. +..+++ .|+
T Consensus 93 -~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 93 -NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred -CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCCC
Confidence 45666666655544 4433 33468899999 456444323332 4555555433 778888 999
Q ss_pred eEEEEecC-C-ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 342 TVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 342 tI~iWn~~-G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|..||.+ | +++-+-+.|-. .+|++-.|+|.-..|.+|+|. +-|+||..|=+|+
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~-----~Ind~q~s~d~T~FiT~s~Dt----------takl~D~~tl~v~ 225 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSS-----KINDLQFSRDRTYFITGSKDT----------TAKLVDVRTLEVL 225 (327)
T ss_pred cEEEEEcccCceeeechhhhcc-----ccccccccCCcceEEecccCc----------cceeeeccceeeE
Confidence 99999999 7 57778899999 999999999999999999999 9999999886664
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.66 E-value=5.2e-07 Score=93.71 Aligned_cols=187 Identities=16% Similarity=0.192 Sum_probs=139.0
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.+||.|+.+..|.-+-|||-.+.+.++.++++ .|+...+-.|.==+.+-.+. =.+|||+++.-..+.+ +.||+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D--rsvkvw~~~~~s~vet---lyGHq 286 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD--RSVKVWSIDQLSYVET---LYGHQ 286 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC--CceEEEehhHhHHHHH---HhCCc
Confidence 57999999999999999999999999999988 77776666332111111111 2489999999999999 99999
Q ss_pred Ccceeeeeec-cee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceeeee
Q 015220 281 KKVDFIEQFN-EKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 281 K~I~FLE~~~-ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~ 356 (411)
..|.-|-.+. |.. .+--.+...++|++ .-|.+.|-+..-+.+..+.|+. .+=|+|+ .||+|.+|.+. =.++.+.
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEe
Confidence 9998886554 444 33447899999999 6666665555544555555443 3559999 78899999998 5555543
Q ss_pred -ccccccCCCC-------ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 357 -EDHLLWHPDC-------NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 357 -e~H~~~~~~c-------~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.-|-. -|+- =++.+|..|--|+++|||-+- .+++|-+..|
T Consensus 365 ~~AHgv-~~~~~~~~~~~Witsla~i~~sdL~asGS~~G----------~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGV-IPELDPVNGNFWITSLAVIPGSDLLASGSWSG----------CVRLWKIEDG 412 (479)
T ss_pred eccccc-cCCccccccccceeeeEecccCceEEecCCCC----------ceEEEEecCC
Confidence 33433 3332 478999999999999999885 9999999988
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.6e-07 Score=95.16 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=152.0
Q ss_pred cCCCeEEEEEeeCce--EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc-cCCcceeee
Q 015220 212 AQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-RNKKVDFIE 287 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~-h~K~I~FLE 287 (411)
+-..+.-+|+-.+.+ .|.++..+.|..++-+ +|..||+.... -.+.|||+++-+.+.+ +.+ |...|-.|+
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~---g~v~iwD~~~~k~~~~---~~~~h~~rvg~la 267 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD---GTVQIWDVKEQKKTRT---LRGSHASRVGSLA 267 (484)
T ss_pred EecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC---CeEEEEehhhcccccc---ccCCcCceeEEEe
Confidence 445677899999877 5566666799999999 99999998754 4689999999999998 445 999999999
Q ss_pred eecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeecccccc
Q 015220 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLW 362 (411)
Q Consensus 288 ~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~ 362 (411)
=-...+..-+.+.+|..+|++..+...- ++-+|...+--|..+ +.|.|| -|+++.|||.+ -+++-++..|..
T Consensus 268 W~~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a- 344 (484)
T KOG0305|consen 268 WNSSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA- 344 (484)
T ss_pred ccCceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-
Confidence 9988899999999999999999988762 688899999999988 779999 99999999997 789999999999
Q ss_pred CCCCccceEEEcCCCC-EEEEE--ecCCCCCccccCCceEEEeeecceeee
Q 015220 363 HPDCNTNNIYITSDQD-LIISY--CKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd-~iiS~--~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.++.++-+|=|. +|++| ++|+ +|++||..||+++
T Consensus 345 ----AVKA~awcP~q~~lLAsGGGs~D~----------~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 345 ----AVKALAWCPWQSGLLATGGGSADR----------CIKFWNTNTGARI 381 (484)
T ss_pred ----eeeEeeeCCCccCceEEcCCCccc----------EEEEEEcCCCcEe
Confidence 999999999664 56664 5565 9999999999986
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.65 E-value=1.3e-06 Score=86.67 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=131.4
Q ss_pred CCCCeEEeeCCC--CeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecC-CCceeeEEEEec-
Q 015220 193 KWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKA-SGHVPLKILSIE- 265 (411)
Q Consensus 193 ~~PgfvEFDd~N--GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t-~~~ipiKIl~I~- 265 (411)
.|-|-|=-+|.| .+-|+.+++|.+.|+||.++.++++++.-. -|..+-.| +.++|++.+.. ....-+.++++.
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 455555555443 567888999999999999999999999855 77777777 55555555544 366788999998
Q ss_pred ------CCcEEeEeeeccccCCcceeee--eecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---ee
Q 015220 266 ------DGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 266 ------tG~~L~t~~~LL~h~K~I~FLE--~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---ql 334 (411)
.-++++. ++-+-+++...- ..++.|+---|+.+|.+||+++|+...=+.++ |.+...-+--+ ..
T Consensus 130 ~~~~~~s~ep~~k---I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~--h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 130 DSSDIDSEEPYLK---IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE--HSSKINDLQFSRDRTY 204 (327)
T ss_pred ChhhhcccCceEE---ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh--hccccccccccCCcce
Confidence 3343444 233334444333 34455555569999999999999666544444 66654444433 67
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
|+|. .|.+-.+||.+ -+.+.|+. -+|-+|+++|||-.|.+|.|.--+.
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~------te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYT------TERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred EEecccCccceeeeccceeeEEEee------ecccccceecccccceEEecCCcee
Confidence 9999 89999999988 66666654 5667999999999999999876553
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.63 E-value=6.1e-08 Score=99.70 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=147.4
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-C-CEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-P-GIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-d-G~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
-|||= .|.-.|.-.+.|..++.|+.-.-+ ++-+|.+. .|+.+..- | .++||-. +--.+.||++.+++++
T Consensus 180 ~v~~l-~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas----~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 180 DVEFL-RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS----NDKNLRLWNVDSLRLR 254 (459)
T ss_pred eeEEc-cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec----CCCceeeeeccchhhh
Confidence 45663 344567778899999999987744 88888877 89999887 4 4544432 2345789999999999
Q ss_pred eEeeeccccCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEe
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn 347 (411)
++ |-||+-+|-.+-.+-+..=+ -+.+-.||+|||++..+.+ |.+..+.-+=-+..-.+|+|+ -|++||+||
T Consensus 255 ~T---LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k---t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 255 HT---LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK---TVLPGSQCNDIVCSISDVISGHFDKKVRFWD 328 (459)
T ss_pred hh---hcccccceeeehhhccccceeeccccchhhhhhhhhhheec---cccccccccceEecceeeeecccccceEEEe
Confidence 99 78999999877666555523 3456689999999988887 888666655445556789999 999999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
-+ ++++.+.+.|.. +.++-+|.||--+.|.+-|+ ++++.|+.|-+.
T Consensus 329 ~Rs~~~~~sv~~gg~------vtSl~ls~~g~~lLsssRDd----------tl~viDlRt~eI 375 (459)
T KOG0288|consen 329 IRSADKTRSVPLGGR------VTSLDLSMDGLELLSSSRDD----------TLKVIDLRTKEI 375 (459)
T ss_pred ccCCceeeEeecCcc------eeeEeeccCCeEEeeecCCC----------ceeeeecccccE
Confidence 88 889999999887 88999999999999999999 999999877543
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.62 E-value=4.4e-07 Score=95.70 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=129.9
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce-------EEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys-------~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
|++|--+++++=|-++++||++... .|.--..|.|-....| .+|+|+++-. .-.||+|= +|..+..
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DR-dG~~~~e 250 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDR-DGFEIVE 250 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC----cceeEEcc-CCceeee
Confidence 5788888889999999999999865 2222235577788888 7777777644 34577763 5555554
Q ss_pred ee----------eccccCCcceeeeeecce---eEEeecCceeeEEEcccceEEE-eeccccCCCceE---EEEeec--e
Q 015220 273 FN----------HLLHRNKKVDFIEQFNEK---LLVKQENENLQILDVRNFELTE-VSRTEFMTPSAF---IFLYEN--Q 333 (411)
Q Consensus 273 ~~----------~LL~h~K~I~FLE~~~ek---llIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAf---ifLy~s--q 333 (411)
|. .-=||-..+..-+-++.. .|-.+.+..|+|||+.+.+... |=.|.-+.+.-+ .|-+.. +
T Consensus 251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~ 330 (641)
T KOG0772|consen 251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK 330 (641)
T ss_pred eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence 43 223666667666666543 2667799999999999865443 333333333322 233333 7
Q ss_pred eEEEE-ecCeEEEEecCCceeeeecccccc--CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 334 LFLTF-RNRTVAVWNFRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~Gel~~s~e~H~~~--~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+++++ -||+|.+|+..+- ...-.=|..- .+...+..|..|+||..|.|=+.|+ |.|||||..
T Consensus 331 ~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~----------tLKvWDLrq 395 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD----------TLKVWDLRQ 395 (641)
T ss_pred hhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhccCCC----------ceeeeeccc
Confidence 78888 9999999999533 3322233333 2345899999999999999999998 999999964
No 88
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.62 E-value=1.1e-07 Score=100.00 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=82.7
Q ss_pred eeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---ee-EEEEecCeEEEEecC-Cceeeeeccc
Q 015220 287 EQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QL-FLTFRNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 287 E~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---ql-FlSfsd~tI~iWn~~-Gel~~s~e~H 359 (411)
.+++++ |++--|..++-||||..-.+.. ...+.-.--|-.+|++| ++ |..++|+.|+|||++ -.+||.|.||
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTpri-kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh 550 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRI-KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 550 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcch-hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC
Confidence 344444 4666678899999998855543 22332122345557777 44 777799999999999 6699999999
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.. -...|-||+||--|-+|.-|. |+.-||+.+|+
T Consensus 551 tD-----GascIdis~dGtklWTGGlDn----------tvRcWDlregr 584 (705)
T KOG0639|consen 551 TD-----GASCIDISKDGTKLWTGGLDN----------TVRCWDLREGR 584 (705)
T ss_pred CC-----CceeEEecCCCceeecCCCcc----------ceeehhhhhhh
Confidence 99 889999999999999999999 99999999986
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.60 E-value=6.8e-07 Score=97.21 Aligned_cols=155 Identities=15% Similarity=0.252 Sum_probs=126.2
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee---EEee--cCceeeEEEcc
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL---LVKQ--ENENLQILDVR 308 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl---lIKQ--e~~~LkI~dL~ 308 (411)
.|-.+++| ||+-||.+++-. .|.|++|+.-+.+-. .=.|-.||..||-+.+.+ |+++ .+--|-+||+.
T Consensus 461 G~R~~~vSp~gqhLAsGDr~G---nlrVy~Lq~l~~~~~---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGG---NLRVYDLQELEYTCF---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred ceEEEEECCCcceecccCccC---ceEEEEehhhhhhhh---eecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 68899999 999999999876 489999998777665 458899999999999988 6665 56789999997
Q ss_pred cc-eEEEeeccccCCCceEEE----------------------------------------------Eee------ceeE
Q 015220 309 NF-ELTEVSRTEFMTPSAFIF----------------------------------------------LYE------NQLF 335 (411)
Q Consensus 309 t~-e~~~v~~T~f~hpsAfif----------------------------------------------Ly~------sqlF 335 (411)
.. .+.. |+.+|++++.. ||- .++-
T Consensus 535 rny~l~q---tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 535 RNYDLVQ---TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cccchhh---hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 54 3444 88999888765 221 1556
Q ss_pred EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 336 LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 336 lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++. +|+.|+|+|.. |..+++|.|...-. =..=.|...|-|-.|++-|.|+ |+-++|.-+|+|.
T Consensus 612 ~t~cQDrnirif~i~sgKq~k~FKgs~~~e--G~lIKv~lDPSgiY~atScsdk----------tl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQVKSFKGSRDHE--GDLIKVILDPSGIYLATSCSDK----------TLCFVDFVSGECV 676 (1080)
T ss_pred EEEecccceEEEeccccceeeeecccccCC--CceEEEEECCCccEEEEeecCC----------ceEEEEeccchhh
Confidence 777 99999999999 99999998876611 1344678899999999999999 9999999999995
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.60 E-value=1.9e-06 Score=89.56 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=149.7
Q ss_pred cCCCCeEEeeCCC--CeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC
Q 015220 192 LKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (411)
Q Consensus 192 l~~PgfvEFDd~N--GkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG 267 (411)
..-||---||-.- .++|+ ++.|++.-+||...-+.|..++++ .|-.++..+...+++..-+.. -|.||+..+.
T Consensus 217 t~~pgi~ald~~~s~~~ilT-GG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~--~i~vws~~~~ 293 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILT-GGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADE--IIRVWSVPLS 293 (506)
T ss_pred cCCCCeeEEeecCCCCccee-cCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcc--eEEeeccccc
Confidence 3457888888665 46665 566889999999999999999988 777888886666655555544 4568998887
Q ss_pred cEEeEeeeccccCCcceeeee--ecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEe---eceeEEEE-ec
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLY---ENQLFLTF-RN 340 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~--~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy---~sqlFlSf-sd 340 (411)
..-.. .-.|..||.++-. .+||+|=++.+...--.|+.+|..+. |+.. ..--++...+ -.-||.++ .|
T Consensus 294 s~~~~---~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 294 SEPTS---SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cCccc---cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--cccceeEEeeEcCCceEEeccCCC
Confidence 74444 6688999998765 56888999999999999999987776 3331 0111222222 22568888 99
Q ss_pred CeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 341 ~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+.++|||+. ++-++.|-+|-+ .++.|..+++|=.++.+|.|. +|++||+.-
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~-----~vk~i~FsENGY~Lat~add~----------~V~lwDLRK 420 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTG-----PVKAISFSENGYWLATAADDG----------SVKLWDLRK 420 (506)
T ss_pred ceEEEEEcCCccccccCCCCCC-----ceeEEEeccCceEEEEEecCC----------eEEEEEehh
Confidence 999999999 999999999999 999999999999999999997 899999864
No 91
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=3.8e-07 Score=94.34 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=127.3
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEe-ecCceeeEEEcccce
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVK-QENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIK-Qe~~~LkI~dL~t~e 311 (411)
||=-++.| +|-.||........+..+|...---++.+| |.+|.++|-+|.-+||-- |++ .-++-+.+||+.+|+
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t---lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT---LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee---eecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 88888999 999999999998888877776666777888 889999999999999866 333 356679999999999
Q ss_pred EEE-eeccccCCCceEEEEeeceeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 312 LTE-VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 312 ~~~-v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
.+. .+.+.-+.++.....--.+-|+++ .|++|--|+++|+++-.-+|-.- ..+--++||+||+.+++-++|+
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~----~~v~dlait~Dgk~vl~v~~d~-- 376 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD----PKVHDLAITYDGKYVLLVTVDK-- 376 (519)
T ss_pred hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc----ceeEEEEEcCCCcEEEEEeccc--
Confidence 986 444434455555555556779999 89999999999999887777653 4567899999999999999999
Q ss_pred CccccCCceEEEeeecce
Q 015220 390 DPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i~tG 407 (411)
.|.+.+.+|-
T Consensus 377 --------~i~l~~~e~~ 386 (519)
T KOG0293|consen 377 --------KIRLYNREAR 386 (519)
T ss_pred --------ceeeechhhh
Confidence 7888877664
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=9.9e-07 Score=89.38 Aligned_cols=178 Identities=19% Similarity=0.260 Sum_probs=127.9
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEE------ec------------
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILS------IE------------ 265 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~------I~------------ 265 (411)
|+..-+.|.+-++|.+.+..+|.+-.++ -|-.||++ .|+++++..+... ..||. ..
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t---aHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET---AHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc---hHHHHHhhcCcCCCCCCCCCCCchh
Confidence 5555677999999999999999999988 89999999 7888887765432 12222 00
Q ss_pred ------------------CCc-EEeEeeeccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeeccccCCCc
Q 015220 266 ------------------DGT-VLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (411)
Q Consensus 266 ------------------tG~-~L~t~~~LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps 324 (411)
+|- +-..+..|-||+.+|-.-+-.-+ .+.-++=+-.-.+||+.+||... .+.+|-+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ 315 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN---ILTGHDS 315 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec---cccCcch
Confidence 221 11133346678777766554433 33567788889999999999998 7888877
Q ss_pred eEEEEe---eceeEEEE-ecCeEEEEecCCc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce
Q 015220 325 AFIFLY---ENQLFLTF-RNRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK 398 (411)
Q Consensus 325 AfifLy---~sqlFlSf-sd~tI~iWn~~Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt 398 (411)
.....- +..|.+|- +|.|+|+|||+-. -|.-|.||.- ..+-.+| + .+|-++|||.|. |
T Consensus 316 ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd----tVTS~vF-~-~dd~vVSgSDDr----------T 379 (481)
T KOG0300|consen 316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD----TVTSVVF-N-TDDRVVSGSDDR----------T 379 (481)
T ss_pred hccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc----ceeEEEE-e-cCCceeecCCCc----------e
Confidence 665443 22666666 8999999999933 4668999887 3444444 3 457799999999 9
Q ss_pred EEEeeecc
Q 015220 399 LFVSLLMF 406 (411)
Q Consensus 399 I~i~~i~t 406 (411)
|||||+..
T Consensus 380 vKvWdLrN 387 (481)
T KOG0300|consen 380 VKVWDLRN 387 (481)
T ss_pred EEEeeecc
Confidence 99999874
No 93
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.58 E-value=1.5e-05 Score=76.21 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=114.7
Q ss_pred eEEEeecCCCeEEEEEeeC-ce--EEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec-CCcEEeEeeecccc
Q 015220 206 KVLTYSAQDSIYKVFDLKN-YT--MLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHR 279 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~-Ys--~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h 279 (411)
++.+..+.++.+.+||+.+ .+ .+.++. ..+.+-+.+| ||.+|++..... --|.+|++. +|++...-...++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~~~~~~~~~- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALTFAAESPLP- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceEEeeeecCC-
Confidence 3566778899999999964 33 666664 3478889999 888888876644 446788886 6764321111122
Q ss_pred CCcceeeeeecce--eEEee-cCceeeEEEccc-ceEEEeeccc--cCCCceEEEEeec-eeEEEE-ecCeEEEEecC--
Q 015220 280 NKKVDFIEQFNEK--LLVKQ-ENENLQILDVRN-FELTEVSRTE--FMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-- 349 (411)
Q Consensus 280 ~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t-~e~~~v~~T~--f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-- 349 (411)
.....|..++++ +++.. .+..|.+||+.+ +...+...+. -.+|....+-... .+|++- .+++|.+|+++
T Consensus 80 -~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 -GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred -CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 235678888765 45544 478999999974 3222211121 1344443332222 555666 77999999997
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|.+......-..-.+......+.++|||+++.+.+.. .++|.+||+.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~---------~~~v~v~~~~ 205 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL---------NSSVDVWQLK 205 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC---------CCEEEEEEEe
Confidence 4442110000000112334679999999999887652 2599999997
No 94
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.57 E-value=1.3e-05 Score=90.72 Aligned_cols=209 Identities=12% Similarity=0.147 Sum_probs=141.6
Q ss_pred eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-------------------ceeEEEEeC-CEE
Q 015220 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------------NVQEIKISP-GIM 246 (411)
Q Consensus 187 F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-------------------~VqeIkISd-G~~ 246 (411)
|....+..|--+-||..++.+.+.....+.++++|+.+.. +.++.+. .-..+.+++ +-.
T Consensus 618 ~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~ 696 (1057)
T PLN02919 618 FEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK 696 (1057)
T ss_pred hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence 4567889999999999888899988889999999998754 4333211 224677774 444
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEee------eccc------cCCcceeeeeecce--eEEee-cCceeeEEEcccce
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFN------HLLH------RNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFE 311 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~------~LL~------h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e 311 (411)
|.+....+++ |.+|+..+|.... +. ..-+ .-....-|.+.+++ ++|.- +++.|++||+.+++
T Consensus 697 LyVad~~~~~--I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 697 VYIAMAGQHQ--IWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEEECCCCe--EEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 4455444444 6778888887642 10 0000 01223447787764 66664 67999999999876
Q ss_pred EEEee---------------------ccccCCCceEEEEeeceeEEEE-ecCeEEEEecCCceeeeecccc---------
Q 015220 312 LTEVS---------------------RTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHL--------- 360 (411)
Q Consensus 312 ~~~v~---------------------~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~--------- 360 (411)
...+. ...+.||..+.+-...++|++- .|++|++||+.+..++++-+.-
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 54321 1246688887776666899988 7889999999965555554421
Q ss_pred ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 361 ~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.-+..-.-.-|++++||+++|+-+.+. +|.+||+.||+.
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn----------~Irvid~~~~~~ 892 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNS----------LIRYLDLNKGEA 892 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCC----------EEEEEECCCCcc
Confidence 111112456799999999998865555 999999999975
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.54 E-value=1e-06 Score=91.64 Aligned_cols=150 Identities=14% Similarity=0.176 Sum_probs=119.9
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccce
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e 311 (411)
++..+.+| ||-+||++..-+-. .||+.+|+++++. +=||..+|--+..- ...++-.+.+-.+++||+.--.
T Consensus 204 eil~~avS~Dgkylatgg~d~~v---~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHV---QIWDCDTLEHVKV---FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceE---EEecCcccchhhc---ccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 88889999 99999988766543 7999999999999 45888998877654 3456889999999999999999
Q ss_pred EEEeeccccCCCceEEEEeec--eeEEEE--ecCeEEEEecCCceeeeeccccccCCCCccceE-EEcCCCCEEEEEecC
Q 015220 312 LTEVSRTEFMTPSAFIFLYEN--QLFLTF--RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKA 386 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifLy~s--qlFlSf--sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i-~Is~Dqd~iiS~~~d 386 (411)
.++ |+|+|++++..+... +-.+|. +|+|+++|+.--|---.|.+|.. .+.-+ +|++ +-.+|||.+
T Consensus 278 ~ve---tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~-----sidcv~~In~--~HfvsGSdn 347 (479)
T KOG0299|consen 278 YVE---TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEG-----SIDCVAFIND--EHFVSGSDN 347 (479)
T ss_pred HHH---HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCC-----CeeeEEEecc--cceeeccCC
Confidence 999 999999999998866 556665 99999999996554447888865 34444 4443 456788876
Q ss_pred CCCCccccCCceEEEeeecceeee
Q 015220 387 DSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 387 ~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+|-+|++.+-|-+
T Consensus 348 ----------G~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 348 ----------GSIALWSLLKKKPL 361 (479)
T ss_pred ----------ceEEEeeecccCce
Confidence 59999999876643
No 96
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.53 E-value=3.6e-06 Score=88.00 Aligned_cols=183 Identities=13% Similarity=0.141 Sum_probs=150.6
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
-+|--|++...++..|+|+. +..++.++.-+ -|-.+|-+ +|.+|+.+.-.+- +-|||.++|+..--|.+ |
T Consensus 245 ~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t---tilwd~~~g~~~q~f~~---~ 317 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT---TILWDAHTGTVKQQFEF---H 317 (524)
T ss_pred CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc---EEEEeccCceEEEeeee---c
Confidence 46899999999999999995 56677777755 78888888 8888877765554 46999999999988763 3
Q ss_pred CCc-ceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 280 NKK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 280 ~K~-I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
+.| +|.-=|.++.--.-.-+.-|.++=|.-..+.. |.-+|--.+.+|-.+ .|++|- .|+|++||+.. +.-+
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~---t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK---TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcce---eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 455 77667788888777888889999999999998 999999999999887 888888 77899999976 7777
Q ss_pred eeeccccccCCCCccceEEEcC---------CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 354 TSFEDHLLWHPDCNTNNIYITS---------DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 354 ~s~e~H~~~~~~c~~n~i~Is~---------Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-.|-.|.- ++-+|.-|| +|..|+|.+.|. |+++||++.|.|+
T Consensus 395 ~~l~~Hsk-----ei~t~~wsp~g~v~~n~~~~~~l~sas~ds----------tV~lwdv~~gv~i 445 (524)
T KOG0273|consen 395 HDLQAHSK-----EIYTIKWSPTGPVTSNPNMNLMLASASFDS----------TVKLWDVESGVPI 445 (524)
T ss_pred hhhhhhcc-----ceeeEeecCCCCccCCCcCCceEEEeecCC----------eEEEEEccCCcee
Confidence 78889984 555555555 467899999998 9999999999987
No 97
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.53 E-value=2.1e-06 Score=84.83 Aligned_cols=205 Identities=16% Similarity=0.165 Sum_probs=146.1
Q ss_pred eeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCe-
Q 015220 119 AFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF- 197 (411)
Q Consensus 119 af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgf- 197 (411)
++|..||--|--+ .+.-+||++=|....+.|.|=+- . +..++=++.+ ..-|+. |.-.|||-
T Consensus 85 vw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~----e------kllrvfdln~----p~App~--E~~ghtg~I 146 (334)
T KOG0278|consen 85 VWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQ----E------KLLRVFDLNR----PKAPPK--EISGHTGGI 146 (334)
T ss_pred hhhhhhhhhhhhh--hhhheeeeEEecccchhhhccch----H------HHhhhhhccC----CCCCch--hhcCCCCcc
Confidence 4666666533211 34558888888887777776220 0 1111112222 112332 45567775
Q ss_pred --EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 --VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 --vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
++|+-.+--||-+ +.|+++|.||-++.+...+|.=+ .|.+..+| ||.+|-+... ..||.|+..+-.+|++.
T Consensus 147 r~v~wc~eD~~iLSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG----SSVKFWDAKSFGLLKSY 221 (334)
T ss_pred eeEEEeccCceEEee-ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC----ceeEEeccccccceeec
Confidence 6899888777766 99999999999999999999844 99999999 9998888765 57999999999999986
Q ss_pred eeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
... -.|..--++|++-+.-- |+-+.--||..||+-+.- -..+|+.++++|-.+ ++|.++ .|+||++|.
T Consensus 222 k~P----~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 222 KMP----CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cCc----cccccccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 521 23444445555553333 445666789999999873 147899999999998 999999 999999999
Q ss_pred cC-Cce
Q 015220 348 FR-GEL 352 (411)
Q Consensus 348 ~~-Gel 352 (411)
.. |..
T Consensus 296 t~~~~~ 301 (334)
T KOG0278|consen 296 TTPGKT 301 (334)
T ss_pred ecCCCc
Confidence 87 543
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.8e-05 Score=77.86 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=166.2
Q ss_pred ceEEEeec--cceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh-h
Q 015220 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI-E 173 (411)
Q Consensus 97 ~V~EIv~a--~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~-~ 173 (411)
+|.+|=+. -+.+++=++.-.-+.||..+|+..|.||--..- |..+=|=.-..++|--|. +.| -.++|-++.- .
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sSt-k~d--~tIryLsl~dNk 91 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSST-KED--DTIRYLSLHDNK 91 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccC-CCC--CceEEEEeecCc
Confidence 44444444 244455566667889999999999999965333 233334444556666554 222 2355554432 2
Q ss_pred hhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEec
Q 015220 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTK 252 (411)
Q Consensus 174 ~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~ 252 (411)
|||= |..-. +.=-..+-...+ ...++.+-|+++|.|||+.-++.--|.--.=--++.. .|.++|+..+
T Consensus 92 ylRY---------F~GH~-~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 92 YLRY---------FPGHK-KRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred eEEE---------cCCCC-ceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecC
Confidence 3321 22100 000123344445 7788899999999999998776644432222234455 7888888888
Q ss_pred CCCceeeEEEEec--CCcEEeEeeeccccCCcceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccCCCceE--
Q 015220 253 ASGHVPLKILSIE--DGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFMTPSAF-- 326 (411)
Q Consensus 253 t~~~ipiKIl~I~--tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf-- 326 (411)
++ .|||+|+. +..+--+|...-+...+..-||-+|++ |||--+++.+.+.|-=+|.... |.-++|.+.
T Consensus 161 ~~---~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---tfs~~~~~~~~ 234 (311)
T KOG1446|consen 161 SE---LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---TFSGYPNAGNL 234 (311)
T ss_pred CC---eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---eEeeccCCCCc
Confidence 77 89999997 567777877666888999999999986 5888899999999999999777 444455444
Q ss_pred ----EEEeeceeEEEE-ecCeEEEEecC-Cceeeeecc-ccc
Q 015220 327 ----IFLYENQLFLTF-RNRTVAVWNFR-GELVTSFED-HLL 361 (411)
Q Consensus 327 ----ifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~-H~~ 361 (411)
.|--.++-+|++ .|++|-+||++ |..+..+.+ |..
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~ 276 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG 276 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC
Confidence 555677999999 56999999999 999999988 444
No 99
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=2.3e-05 Score=84.67 Aligned_cols=179 Identities=20% Similarity=0.215 Sum_probs=135.4
Q ss_pred cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
|.|.|- .+| -|-+.+-++.+.-|||.+.+++|.+... -+=+|.++ -+-.||++ |..+ -+..+++.+
T Consensus 73 E~L~W~-------e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig-cddG--vl~~~s~~p 141 (691)
T KOG2048|consen 73 ESLAWA-------EGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG-CDDG--VLYDFSIGP 141 (691)
T ss_pred eeEEEc-------cCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee-cCCc--eEEEEecCC
Confidence 566665 344 4667777899999999999999888744 77788888 34556666 3333 677888888
Q ss_pred CcEEeEeeeccccC-Ccceeeeeeccee--EEeecCceeeEEEcccceEEE-eeccccCCCc-------eEEEEeeceeE
Q 015220 267 GTVLKSFNHLLHRN-KKVDFIEQFNEKL--LVKQENENLQILDVRNFELTE-VSRTEFMTPS-------AFIFLYENQLF 335 (411)
Q Consensus 267 G~~L~t~~~LL~h~-K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~-v~~T~f~hps-------AfifLy~sqlF 335 (411)
|++.... .|+++ ..|=.+.-.++.. ..-+.+.-|+|||+.++.... +-.-+....+ ++.|| --...
T Consensus 142 ~~I~~~r--~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI 218 (691)
T KOG2048|consen 142 DKITYKR--SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTI 218 (691)
T ss_pred ceEEEEe--ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcE
Confidence 8888764 45665 6777777777766 556688889999999977655 2222222233 35555 22667
Q ss_pred EEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 336 LTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 336 lSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+++ |-|+|.+||.. |.|+.++.-|.. .+..++.++++|.++|+..|.
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~a-----dVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDA-----DVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhc-----ceeEEEEcCCCCeEEEccCCC
Confidence 888 99999999999 999999999999 999999999999999999998
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.50 E-value=3.2e-06 Score=86.78 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=129.7
Q ss_pred CCeEEEeecCCCeEEEEEeeCc----------------eEEEEeccCceeEEEE--eC---CEEEEEEecCCCceeeEEE
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNY----------------TMLYSISDKNVQEIKI--SP---GIMLLIFTKASGHVPLKIL 262 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Y----------------s~iysLs~~~VqeIkI--Sd---G~~Lai~q~t~~~ipiKIl 262 (411)
|..+.++-++.+-.+||||... .+||+...+...-..+ || |- |+.++|.. -|.+|
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-LlsGDc~~---~I~lw 239 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LLSGDCVK---GIHLW 239 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc-cccCcccc---ceEee
Confidence 7778888889999999999762 2444444432222222 22 21 34444433 47889
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeec-ceeEEee--cCceeeEEEcccc-eEEEeeccccCCCceEEEEeec---eeE
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQ--ENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN---QLF 335 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIKQ--e~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s---qlF 335 (411)
--.||.=...-.-+.+|++-|+=|.=++ |.=++++ -++.|+|||++++ +.-+|.. ..|++-+-.+--| .++
T Consensus 240 ~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 240 EPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREPLL 317 (440)
T ss_pred eeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCceeeEEccCCccee
Confidence 8889887776666889999999888765 3335555 7899999999998 3333433 5677777777766 457
Q ss_pred EEE-ecCeEEEEecC----CceeeeeccccccCCCCccceEEEcCCCCEEE-EEecCCCCCccccCCceEEEeeecc
Q 015220 336 LTF-RNRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 336 lSf-sd~tI~iWn~~----Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ii-S~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+|+ -||++.|||+| |.+|++|.-|.. -+.+|.-+|..+..| +++.|. .|-||||..
T Consensus 318 asG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~-----pItsieW~p~e~s~iaasg~D~----------QitiWDlsv 379 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSGQPVATFKYHKA-----PITSIEWHPHEDSVIAASGEDN----------QITIWDLSV 379 (440)
T ss_pred eecCCCceEEEEEhhhccCCCcceeEEeccC-----CeeEEEeccccCceEEeccCCC----------cEEEEEeec
Confidence 777 88899999999 789999999999 899999997655433 334455 899999864
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=1.1e-06 Score=91.11 Aligned_cols=240 Identities=15% Similarity=0.200 Sum_probs=154.9
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC--CcceeecccCCCCeEEeeCCCCeEEEee
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG--FALFESESLKWPGFVEFDDVNGKVLTYS 211 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~--~~LF~~~~l~~PgfvEFDd~NGkiLt~~ 211 (411)
...++.+++.=-.+.-++|. ..-|+=--|-|-.- |+++.=..+.| +-+|...-=-.|--.-. -|+|.-++.+
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~---wSPDdryLlaCg~~--e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W-~pDg~~~V~G 330 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIM---WSPDDRYLLACGFD--EVLSLWDVDTGDLRHLYPSGLGFSVSSCAW-CPDGFRFVTG 330 (519)
T ss_pred cceeeeeeeecccCceEEEE---ECCCCCeEEecCch--HheeeccCCcchhhhhcccCcCCCcceeEE-ccCCceeEec
Confidence 33445666655444434443 33444455556443 22333222223 34454430011111111 2677779999
Q ss_pred cCCCeEEEEEeeCceEEEEeccC---ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee
Q 015220 212 AQDSIYKVFDLKNYTMLYSISDK---NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs~~---~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE 287 (411)
++|.++--||+.. ..++.-.+. .|.+++|+ ||-.+++.. ++ --|.+++.++-...+ +.--..||-.+-
T Consensus 331 s~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d--~~i~l~~~e~~~dr~----lise~~~its~~ 402 (519)
T KOG0293|consen 331 SPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVT-VD--KKIRLYNREARVDRG----LISEEQPITSFS 402 (519)
T ss_pred CCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEe-cc--cceeeechhhhhhhc----cccccCceeEEE
Confidence 9999999999865 334444444 49999999 777665554 33 335677887766554 223346777788
Q ss_pred eeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEE-----Eeec-eeEEEE-ecCeEEEEecC-Cceeeeec
Q 015220 288 QFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-----LYEN-QLFLTF-RNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 288 ~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif-----Ly~s-qlFlSf-sd~tI~iWn~~-Gel~~s~e 357 (411)
+++++- |+-=.++-|++||+.-..+.. -.+||...+.- -+.+ ..-+|+ .|.+|.||+.. |.|+..|.
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~---kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVR---KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHH---HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 888776 666799999999999665555 78888876542 2344 556777 88999999999 99999999
Q ss_pred cccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 358 DHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
||.. .+|-|+-.|. -..+.|++.| |||+||-+.
T Consensus 480 GHs~-----~vNcVswNP~~p~m~ASasDD----------gtIRIWg~~ 513 (519)
T KOG0293|consen 480 GHSK-----TVNCVSWNPADPEMFASASDD----------GTIRIWGPS 513 (519)
T ss_pred CCcc-----eeeEEecCCCCHHHhhccCCC----------CeEEEecCC
Confidence 9998 7888877774 3456666666 499999764
No 102
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.46 E-value=1.9e-05 Score=80.76 Aligned_cols=186 Identities=10% Similarity=0.086 Sum_probs=146.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
.||-.-++.++.|.-=-||++.+...+++|+++ -|.++..| ||.+||+..=.. -++||...||....+ ++.
T Consensus 73 ~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG---~v~v~~~stg~~~~~---~~~ 146 (399)
T KOG0296|consen 73 HPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG---KVLVFKVSTGGEQWK---LDQ 146 (399)
T ss_pred CCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc---cEEEEEcccCceEEE---eec
Confidence 347778888888888889999999999999976 89999999 999999987664 479999999999999 667
Q ss_pred cCCcceeeeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEE---EeeceeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIF---LYENQLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif---Ly~sqlFlSf-sd~tI~iWn~~-Ge 351 (411)
.-.+|..|.=|+-.+++. .++..+=.|.+-++..-+ ..-+|.+-..+ ...-+..+++ .|+||++||+. |.
T Consensus 147 e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 147 EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ccCceEEEEecccccEEEeecCCCcEEEEECCCcceee---EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 778899999999777544 477889999999943332 34445554443 2234677777 99999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++....+-... +..=+.++.++-++++|+++- ...+.+.-|||++
T Consensus 224 p~~~~~~~e~~----~~~~~~~~~~~~~~~~g~~e~----------~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 224 PLHKITQAEGL----ELPCISLNLAGSTLTKGNSEG----------VACGVNNGSGKVV 268 (399)
T ss_pred eeEEecccccC----cCCccccccccceeEeccCCc----------cEEEEccccceEE
Confidence 88877744433 233467899999999999997 7777777777764
No 103
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.36 E-value=2.4e-05 Score=77.57 Aligned_cols=197 Identities=13% Similarity=0.142 Sum_probs=147.9
Q ss_pred ceeecccCCCCeEE---eeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceee
Q 015220 186 LFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 186 LF~~~~l~~PgfvE---FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipi 259 (411)
+++-+--.|-+-|| .|.++--.++.-+.|+++++||.+..+++..+.. +|+- |.-| ||...++.....- |
T Consensus 55 ~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~---i 130 (313)
T KOG1407|consen 55 RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDR---I 130 (313)
T ss_pred hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCccc---E
Confidence 44444444444444 5777877888889999999999999999977763 3443 3333 7777777766553 5
Q ss_pred EEEEecCCcEEeEeeeccccCCcceeeeeecc-ee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---ee
Q 015220 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-KL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QL 334 (411)
Q Consensus 260 KIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---ql 334 (411)
..++.-+-+++++..+ +++++=+--.++ .+ ++-.+...+.|+.--.=|+.. ++-.||+.-+|+..+ +.
T Consensus 131 t~id~r~~~~~~~~~~----~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 131 TFIDARTYKIVNEEQF----KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---SIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred EEEEecccceeehhcc----cceeeeeeecCCCCEEEEecCCceEEEEecccccccc---ccccCCcceEEEEECCCCce
Confidence 5677788888876442 233332222232 33 566677999999998888888 999999999999988 78
Q ss_pred EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 335 FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 335 FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|+++ .|-.+.+||++ ---+|.|..|.- -+.+|-.|-||+.|.|+|.|- .|.|=+.+||.
T Consensus 204 fA~GsADAlvSLWD~~ELiC~R~isRldw-----pVRTlSFS~dg~~lASaSEDh----------~IDIA~vetGd 264 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDELICERCISRLDW-----PVRTLSFSHDGRMLASASEDH----------FIDIAEVETGD 264 (313)
T ss_pred EeeccccceeeccChhHhhhheeeccccC-----ceEEEEeccCcceeeccCccc----------eEEeEecccCC
Confidence 9999 88899999999 334558888766 899999999999999999999 88888888885
No 104
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.36 E-value=0.0001 Score=66.03 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=113.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec--cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs--~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.+|++++. ..++.+..||..+.+.+-+.+ +.-.....+.++.+++.. ..+ .+-.+|++||++++++.......
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~--~~~--~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT--SDG--SLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE--TTS--EEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc--cee--eeEecccCCcceeeeeccccccc
Confidence 35555554 588899999999999884444 332222355677765555 222 78889999999999943111000
Q ss_pred C---cceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCc------------eEEEEeeceeEEEEecC-eEE
Q 015220 281 K---KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS------------AFIFLYENQLFLTFRNR-TVA 344 (411)
Q Consensus 281 K---~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps------------AfifLy~sqlFlSfsd~-tI~ 344 (411)
. ..--..+.++.+++...+..|..+|+.+|+..---.. ..|. +-..+....+|++-.++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~ 187 (238)
T PF13360_consen 110 AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVA 187 (238)
T ss_dssp CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEE
T ss_pred cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCCeEEE
Confidence 1 1112333477788888899999999999998541111 1211 22222333667766666 467
Q ss_pred EEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 345 iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+ |+. |+.+- +.... .... ....+++.++..+.+. .+-.+|+.|||.+
T Consensus 188 ~-d~~tg~~~w--~~~~~-----~~~~-~~~~~~~~l~~~~~~~----------~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 188 V-DLATGEKLW--SKPIS-----GIYS-LPSVDGGTLYVTSSDG----------RLYALDLKTGKVV 235 (238)
T ss_dssp E-ETTTTEEEE--EECSS------ECE-CEECCCTEEEEEETTT----------EEEEEETTTTEEE
T ss_pred E-ECCCCCEEE--EecCC-----CccC-CceeeCCEEEEEeCCC----------EEEEEECCCCCEE
Confidence 7 888 77443 22211 1111 1568889999988665 9999999999975
No 105
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.35 E-value=0.0003 Score=68.75 Aligned_cols=266 Identities=15% Similarity=0.083 Sum_probs=154.8
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~ 181 (411)
+.+.+.|++.+..|.-.|||..||+.+--.+... ++..+.... ++.+++.+ .+ ..|.|-.. ..|+.-
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v~--~~~v~v~~---~~--g~l~ald~-----~tG~~~ 128 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGAD--GGLVFVGT---EK--GEVIALDA-----EDGKEL 128 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEEc--CCEEEEEc---CC--CEEEEEEC-----CCCcEe
Confidence 3457899999999999999999999887666543 333344333 34444322 11 23433322 122220
Q ss_pred CCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc-e------eEEEEeCCEEEEEEecCC
Q 015220 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-V------QEIKISPGIMLLIFTKAS 254 (411)
Q Consensus 182 ~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~-V------qeIkISdG~~Lai~q~t~ 254 (411)
=.. -+.......|-. .++++++ ...++.+..||.++.+.+.+..... . ....+.+|.+++ ... +
T Consensus 129 W~~-~~~~~~~~~p~v-----~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~-~ 199 (377)
T TIGR03300 129 WRA-KLSSEVLSPPLV-----ANGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA-G 199 (377)
T ss_pred eee-ccCceeecCCEE-----ECCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC-C
Confidence 000 011122333432 1345544 4568889999999999887766431 1 122344665433 222 2
Q ss_pred CceeeEEEEecCCcEEeEeeeccccC-C------cc-eeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRN-K------KV-DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~-K------~I-~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
. .+..+|++||+.+.+...-.+.. . .+ ....+.++.+++...+..+..||+.+|+..--. ....+...
T Consensus 200 g--~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~--~~~~~~~p 275 (377)
T TIGR03300 200 G--KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR--DASSYQGP 275 (377)
T ss_pred C--EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee--ccCCccCc
Confidence 2 46788999999998754211110 0 01 112346788898888999999999999765411 12222222
Q ss_pred EEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 327 IFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 327 ifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.++..++|+.-.++.+..+|.. |+++-+.+.-.. .+ ..+..+ .++.|+.++.+. .+.++|..
T Consensus 276 -~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~---~~-~ssp~i--~g~~l~~~~~~G----------~l~~~d~~ 338 (377)
T TIGR03300 276 -AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY---RQ-LTAPAV--VGGYLVVGDFEG----------YLHWLSRE 338 (377)
T ss_pred -eEeCCEEEEECCCCeEEEEECCCCcEEEccccccC---Cc-cccCEE--ECCEEEEEeCCC----------EEEEEECC
Confidence 2556688887789999999997 988765532110 01 112222 356777776654 88889988
Q ss_pred ceeee
Q 015220 406 FVTCK 410 (411)
Q Consensus 406 tGk~~ 410 (411)
|||.+
T Consensus 339 tG~~~ 343 (377)
T TIGR03300 339 DGSFV 343 (377)
T ss_pred CCCEE
Confidence 88875
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=2.3e-06 Score=86.96 Aligned_cols=185 Identities=19% Similarity=0.220 Sum_probs=137.5
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEec---cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs---~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+.+.|+++++|+-+|||..++..+|+... .+.|-.++.| |+.-++. +..---+.|-.+..|+.|++| -||
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS---~sfD~tvRiHGlKSGK~LKEf---rGH 347 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS---ASFDQTVRIHGLKSGKCLKEF---RGH 347 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhc---ccccceEEEeccccchhHHHh---cCc
Confidence 66789999999999999999999997776 2388899999 5543332 223345788999999999994 489
Q ss_pred CCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCC-----ceEEEEeec-eeEEEE-ecCeEEEEecCC
Q 015220 280 NKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTP-----SAFIFLYEN-QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 280 ~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hp-----sAfifLy~s-qlFlSf-sd~tI~iWn~~G 350 (411)
+.=|+=.--..|+. +-++.+..+|+|+..++|+.. |...-+ -.++-+.-| +-|+.- +++||-|-|.+|
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~---Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS---TFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhh---hccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 98888766677766 556788999999999999875 332211 123333333 456666 999999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..|++|..-.--- -.-=+..+||-|+.|-+-..|. ..--++..+||+
T Consensus 425 QvVrsfsSGkREg--GdFi~~~lSpkGewiYcigED~----------vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 QVVRSFSSGKREG--GDFINAILSPKGEWIYCIGEDG----------VLYCFSVLSGKL 471 (508)
T ss_pred eEEeeeccCCccC--CceEEEEecCCCcEEEEEccCc----------EEEEEEeecCce
Confidence 9999997543310 1223567899999998877776 788888888886
No 107
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=4.6e-05 Score=77.37 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=109.9
Q ss_pred CCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
.+.+.|||+.....-+-.. ++.+...+.| ||..|+.....+...-+.+|++.+|+...-+. +-++ +.....++|
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~~---~~~~~~SPD 253 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRH---NGAPAFSPD 253 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCCC---cCCeEECCC
Confidence 4578888887765433223 3478999999 89888876655566778899999997543211 1122 234567777
Q ss_pred ee--EEe-e--cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEE--ecCCceeeeeccc
Q 015220 292 KL--LVK-Q--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVW--NFRGELVTSFEDH 359 (411)
Q Consensus 292 kl--lIK-Q--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iW--n~~Gel~~s~e~H 359 (411)
+- ++. + +...|.+||+.+++..++... +........+ .+.++- +++...|| |+.|...+.+..+
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~----~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCC----CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence 64 322 2 345799999999988875322 2222333333 343333 44556676 5554444445443
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.. ......+||||+.|+..+.+. +...|.+||+.+|+.
T Consensus 330 ~~-----~~~~~~~SpDG~~Ia~~~~~~-------g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 330 GS-----QNQDADVSSDGKFMVMVSSNG-------GQQHIAKQDLATGGV 367 (429)
T ss_pred CC-----CccCEEECCCCCEEEEEEccC-------CCceEEEEECCCCCe
Confidence 33 334678999999998766553 234788899999875
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.32 E-value=9.2e-05 Score=81.75 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=142.9
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeC-----ce--EEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecC
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YT--MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~-----Ys--~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
|-+=|++=.+=|.-|++.--++.+.||+... |. .+++++++.+..+-= |...|=-----...-+++|||+.|
T Consensus 113 ~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt 191 (910)
T KOG1539|consen 113 HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRT 191 (910)
T ss_pred ccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEecc
Confidence 3356777788899999999999999999988 44 445555555433321 222211111112446799999999
Q ss_pred CcEEeEeeeccccCCcceeeeeec--ceeEEeecCceeeEEEcccceEEEeeccccCCC-ceEEEEeec----eeEEEE-
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTP-SAFIFLYEN----QLFLTF- 338 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hp-sAfifLy~s----qlFlSf- 338 (411)
|+++++|. ++-..|-.+||.| |=+-|--++..+-|.||+.+|++ ..|-|+ ..+..|..+ -+++++
T Consensus 192 ~K~v~~f~---~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----~sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 192 GKVVYTFQ---EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----MSFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred CcEEEEec---ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----EEEEccccceeEEEeccCCCeeEEecc
Confidence 99999965 5558899999998 44556668999999999999998 567787 777777766 567788
Q ss_pred ecCeEEEEecCCceee--eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 339 RNRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
++|.+.+|||++..+- +.+-|.+ .++.+-.=+-+-++++.++|+ +.+||=.-||
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~-----sv~~~~fl~~epVl~ta~~Dn----------Slk~~vfD~~ 320 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYG-----SVTGATFLPGEPVLVTAGADN----------SLKVWVFDSG 320 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccC-----CcccceecCCCceEeeccCCC----------ceeEEEeeCC
Confidence 7799999999977554 6677877 778888889999999999999 7777755544
No 109
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=7.1e-05 Score=75.67 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=109.0
Q ss_pred CCCCeEEEeecC---CCeEEEEEeeCce--EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 202 DVNGKVLTYSAQ---DSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~---ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.++|+.|+|... +..+.+||+.+.+ .+....+ ....++.| ||..|++.....+.+-|.+|++.+|++..
T Consensus 212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~---- 286 (429)
T PRK01742 212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ---- 286 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe----
Confidence 468888887654 3579999999875 3444443 34578999 89888877655666667788998887543
Q ss_pred ccccCCcceeeeeecce--eEEee-cCceeeEEEccc--ceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecC-
Q 015220 276 LLHRNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRN--FELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR- 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t--~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~- 349 (411)
+-++...+.....++++ ++..+ .+...+||++.. ++...+ +... ...-+-...+.++......+.+||+.
T Consensus 287 lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~ 362 (429)
T PRK01742 287 LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMINGDNVVKQDLTS 362 (429)
T ss_pred eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC
Confidence 33444445556677775 34333 456788888753 433333 1111 10011111133333333456669998
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec--ceee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM--FVTC 409 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~--tGk~ 409 (411)
|+.. .+..+.. ...+..+|||+.|++++.+. .+.+|++. +|++
T Consensus 363 g~~~-~lt~~~~------~~~~~~sPdG~~i~~~s~~g----------~~~~l~~~~~~G~~ 407 (429)
T PRK01742 363 GSTE-VLSSTFL------DESPSISPNGIMIIYSSTQG----------LGKVLQLVSADGRF 407 (429)
T ss_pred CCeE-EecCCCC------CCCceECCCCCEEEEEEcCC----------CceEEEEEECCCCc
Confidence 6543 3333211 24577899999999999875 56666653 4654
No 110
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.26 E-value=0.00026 Score=80.47 Aligned_cols=205 Identities=15% Similarity=0.152 Sum_probs=135.0
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc--C--------------ceeEEEEe-CCEEEEEEecC
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--K--------------NVQEIKIS-PGIMLLIFTKA 253 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~--~--------------~VqeIkIS-dG~~Lai~q~t 253 (411)
.|.+|+=+-+|..||++.++....+.+.|||+.+ +.+..+-. + .-+.|.+. +|..|.+.+..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 5799999999999999999999999999999865 44444432 1 24778887 56667777766
Q ss_pred CCceeeEEEEecCCcEEeEeee--cc-----c--------cCCcceeeeeec--ceeEEee-cCceeeEEEcccceEEEe
Q 015220 254 SGHVPLKILSIEDGTVLKSFNH--LL-----H--------RNKKVDFIEQFN--EKLLVKQ-ENENLQILDVRNFELTEV 315 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t~~~--LL-----~--------h~K~I~FLE~~~--ekllIKQ-e~~~LkI~dL~t~e~~~v 315 (411)
+.+ |.++++.+|++. ++.- .. + -+.|. -+.+.+ +.++|.- +++.|.+||..++....+
T Consensus 645 n~~--Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 645 NHA--LREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred Cce--EEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 654 577888887642 2210 00 0 01222 356664 5667764 789999999988876543
Q ss_pred e--------------ccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC-Ccee--e-----------eecccccc---
Q 015220 316 S--------------RTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-GELV--T-----------SFEDHLLW--- 362 (411)
Q Consensus 316 ~--------------~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-Gel~--~-----------s~e~H~~~--- 362 (411)
. .+.|.+|..+.+-... .+|++= .+++|++||++ |... . .|.++.+.
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 2 1245566665554433 588887 67899999998 4421 1 11111000
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.....-..|++++||++.|+-+.+. +|.+||..||++.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~----------rIrviD~~tg~v~ 838 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNH----------KIKKLDPATKRVT 838 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCC----------EEEEEECCCCeEE
Confidence 0011235789999999988876554 9999999998764
No 111
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=4.3e-05 Score=77.20 Aligned_cols=168 Identities=10% Similarity=0.050 Sum_probs=105.7
Q ss_pred CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec
Q 015220 214 DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ 290 (411)
++.+.|||+..+.. ..|+. +.+...+.| ||..|+.....+...-|.+|++.+|+...-.. +-++.. ....++
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g~~~---~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRGHNG---APAFSP 257 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCCccC---ceeECC
Confidence 47889999988764 44554 368999999 89888877665666678999999997532111 223332 456677
Q ss_pred ce--eEEee-cCce--eeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC--Cceeeeecc
Q 015220 291 EK--LLVKQ-ENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFED 358 (411)
Q Consensus 291 ek--llIKQ-e~~~--LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~ 358 (411)
|+ ++... .+.. |-+||+.+++...+.. ++.....+..+ .++++- +++..+||+.+ |...+.+ +
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~----~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~ 332 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTS----GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G 332 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeecc----CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c
Confidence 65 33332 3444 4555888888776532 33222223322 444444 67889999876 4434433 3
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|.. .+..+||||+.|+..+.+ .|-+||+.+|++
T Consensus 333 ~~~-------~~~~~SpDG~~ia~~~~~-----------~i~~~Dl~~g~~ 365 (429)
T PRK01742 333 GRG-------YSAQISADGKTLVMINGD-----------NVVKQDLTSGST 365 (429)
T ss_pred CCC-------CCccCCCCCCEEEEEcCC-----------CEEEEECCCCCe
Confidence 332 235689999999887654 355689999875
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.23 E-value=2.9e-05 Score=82.43 Aligned_cols=222 Identities=20% Similarity=0.264 Sum_probs=140.1
Q ss_pred EEeCCCCceEEEEEeecCCCeEEEEEe------EecCCCceeeeEeee--hhhhhhCCCCCCCcceeecccCCCCeEEee
Q 015220 130 FLNVTADEVIRSLFYNKNNDSLITVSV------YASDNFSSLRCRSTR--IEYIRRGKPDAGFALFESESLKWPGFVEFD 201 (411)
Q Consensus 130 ~lN~s~~evIrsifyN~~n~slI~vSv------~~sd~~s~L~cr~~~--~~~i~~gk~~~~~~LF~~~~l~~PgfvEFD 201 (411)
.|-|...-+|+|+=|.-..+.|..||- +--|.|.-+.|--=. |.++.. -+|-.-.-+ -.||-
T Consensus 208 ~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n---TKGHia~lt-------~g~wh 277 (641)
T KOG0772|consen 208 QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN---TKGHIAELT-------CGCWH 277 (641)
T ss_pred ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc---cCCceeeee-------ccccc
Confidence 356667779999999999999999883 445666666654333 333332 122111111 24666
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccC
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRN 280 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~ 280 (411)
.-|-.+...++.|++.|+||+.+.+ ++.|-||--+ ....++|+..+.-. +|+.+...+
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k-------~q~qVik~k~--------~~g~Rv~~tsC~~nrdg~~iAagc------ 336 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTK-------SQLQVIKTKP--------AGGKRVPVTSCAWNRDGKLIAAGC------ 336 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCch-------hheeEEeecc--------CCCcccCceeeecCCCcchhhhcc------
Confidence 6788888999999999999999987 2333333321 11345555555443 455544433
Q ss_pred CcceeeeeecceeEEeecCceeeEEEcccc---eEEEeeccccC--CCceEEEEeeceeEEEE-ecCeEEEEecC--Cce
Q 015220 281 KKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFM--TPSAFIFLYENQLFLTF-RNRTVAVWNFR--GEL 352 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQe~~~LkI~dL~t~---e~~~v~~T~f~--hpsAfifLy~sqlFlSf-sd~tI~iWn~~--Gel 352 (411)
.+..|||||..+. --++|...--. .-+.+.|-|-.+.+||= -|+++++||++ -++
T Consensus 337 -----------------~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 337 -----------------LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred -----------------cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 3678999998652 22333333221 12344555555788887 89999999999 778
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|-..+|=...-| ..+...|||+++|+.|......+ ..|++-.+|-+|
T Consensus 400 L~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~~~~----~~g~L~f~d~~t 446 (641)
T KOG0772|consen 400 LNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAPNGM----TAGTLFFFDRMT 446 (641)
T ss_pred hhhhcCCCccCC---CCccccCCCceEEEecccccCCC----CCceEEEEeccc
Confidence 877777555433 23567899999999998875221 226676666555
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=3.9e-05 Score=75.40 Aligned_cols=229 Identities=13% Similarity=0.156 Sum_probs=143.9
Q ss_pred cEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee-hhhhhhCCCCCCCc---ceeecccCCCCeE--E
Q 015220 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR-IEYIRRGKPDAGFA---LFESESLKWPGFV--E 199 (411)
Q Consensus 126 ~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~-~~~i~~gk~~~~~~---LF~~~~l~~Pgfv--E 199 (411)
++.|+---++...||++=|..+-.-+-+-|-- -.++.-+-| ..++|.+---+-.| ||..-. -|-|-+ .
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~lyavgsns-----kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k-hhkgsiyc~ 95 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGGLYAVGSNS-----KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK-HHKGSIYCT 95 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCceEEeccCC-----ceEEEEccccccCcccccccccCCCeEEeeecc-ccCccEEEE
Confidence 44454334677788888777655544332211 223322222 44555543322222 333211 122222 1
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
-=-+.|+.++.++.|+++||--+++-++-. ++++ +| ++.++|++
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~--~g~d-le-----------------------~nmhdgti---------- 139 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNA--TGHD-LE-----------------------FNMHDGTI---------- 139 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccc--cCcc-ee-----------------------eeecCCce----------
Confidence 124678888989999999987776654321 1111 22 33444443
Q ss_pred CCcceeeeeeccee-EEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecC-Cc
Q 015220 280 NKKVDFIEQFNEKL-LVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 280 ~K~I~FLE~~~ekl-lIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~-Ge 351 (411)
.++-||+-...+= ++++ ++-||-|-|..+|+.+. .+-+|.--+++||.= -.|+++ +|.|||+||++ ..
T Consensus 140 -rdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~---a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 140 -RDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH---ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred -eeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce---eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc
Confidence 2344555444333 5555 45688899999999999 888999999999954 789999 99999999999 66
Q ss_pred eeeeecc--ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 352 LVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 352 l~~s~e~--H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|+++.. |-.--..-.+..|++.|.|.+|+||-+|. +--++||.-|..+
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds----------sc~lydirg~r~i 266 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS----------SCMLYDIRGGRMI 266 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC----------ceEEEEeeCCcee
Confidence 6665532 22211223678899999999999999998 8889999888764
No 114
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00016 Score=73.00 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCeEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec
Q 015220 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (411)
Q Consensus 214 ds~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ 290 (411)
.+.+.|||+.+... ..|+ ++.+...+.| ||..|+.....+...-|.+|++.+|+...-.. ..........++
T Consensus 183 ~~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~----~~g~~~~~~~Sp 257 (433)
T PRK04922 183 RYALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS----FRGINGAPSFSP 257 (433)
T ss_pred eEEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc----CCCCccCceECC
Confidence 35678899865543 3344 2368888999 88888877666666778899999998744211 111223456666
Q ss_pred ce--eEE-ee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCe--EEEEecC-Cceee-eeccc
Q 015220 291 EK--LLV-KQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRT--VAVWNFR-GELVT-SFEDH 359 (411)
Q Consensus 291 ek--llI-KQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~t--I~iWn~~-Gel~~-s~e~H 359 (411)
++ +++ .+ ++..|.+||+.+++...+.... .....+.|-... +++++- +++. |-++++. |+..+ +++++
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 65 332 23 3457999999999987653211 111122222222 333332 3444 4455666 44332 34432
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. ..++.+||||+.|+-.+.+. +...|.+||+.+|+..
T Consensus 337 ~-------~~~~~~SpDG~~Ia~~~~~~-------~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 337 Y-------NARASVSPDGKKIAMVHGSG-------GQYRIAVMDLSTGSVR 373 (433)
T ss_pred C-------ccCEEECCCCCEEEEEECCC-------CceeEEEEECCCCCeE
Confidence 2 23588999999988765432 2347999999998753
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.5e-06 Score=94.25 Aligned_cols=117 Identities=9% Similarity=0.128 Sum_probs=104.6
Q ss_pred ccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
|-+|..||+.+-...+.-||+-+ +..||+|||-.++..+ |+++|..-..-|+.+ +.|+++ .|.-+.+||-+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 66899999999999888877764 4479999999999888 999999999999876 677888 88999999999
Q ss_pred -CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
--+.-++.+|-. .++.+..||||.++.+|..|. +++|||+.-||++
T Consensus 143 k~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~----------tvki~d~~agk~~ 189 (825)
T KOG0267|consen 143 KKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDN----------TVKIWDLTAGKLS 189 (825)
T ss_pred ccCceeeecCCcc-----eeEEEeecCCCceeeccCCcc----------eeeeecccccccc
Confidence 567788999998 999999999999999999988 9999999999875
No 116
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.20 E-value=1.1e-05 Score=87.91 Aligned_cols=181 Identities=11% Similarity=0.085 Sum_probs=129.7
Q ss_pred CCCeEEEeecCCCeEEEEEeeCce----------EEEE-eccC-ceeEEEEeC------CEEEE-EEecCCCceeeEEEE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYT----------MLYS-ISDK-NVQEIKISP------GIMLL-IFTKASGHVPLKILS 263 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys----------~iys-Ls~~-~VqeIkISd------G~~La-i~q~t~~~ipiKIl~ 263 (411)
.+||-|+..++|+.+|||-...-+ ++|. +.++ ++..+..++ ..+.- ..+.+....|.|++.
T Consensus 277 ~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~ 356 (712)
T KOG0283|consen 277 HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFV 356 (712)
T ss_pred CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcccc
Confidence 689999999999999999998822 1211 1111 122222221 11111 112222466777766
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf 338 (411)
++. +++.. +.||..+|==|-=+-.+. |=.+-+...++|++.+.++.+ .|-|+.-|.|++.+ ..|+||
T Consensus 357 f~e-kP~~e---f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 357 FSE-KPFCE---FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred ccc-cchhh---hhccchhheecccccCCeeEeccccccEEeecCCCcceee----EEecCCeeEEEEecccCCCcEeec
Confidence 653 44454 779988886677676666 556689999999999999997 59999999999988 789999
Q ss_pred -ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 339 -RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
=|+++|||+.-..-|.--+|=.- -+.+|..+|||+..|-|+=.- ...+++..-
T Consensus 429 SLD~KvRiWsI~d~~Vv~W~Dl~~-----lITAvcy~PdGk~avIGt~~G----------~C~fY~t~~ 482 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVVDWNDLRD-----LITAVCYSPDGKGAVIGTFNG----------YCRFYDTEG 482 (712)
T ss_pred ccccceEEeecCcCeeEeehhhhh-----hheeEEeccCCceEEEEEecc----------EEEEEEccC
Confidence 89999999999887775555444 689999999999999998763 666666543
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=0.00022 Score=79.34 Aligned_cols=194 Identities=18% Similarity=0.261 Sum_probs=140.9
Q ss_pred eeeEeeehhhhhhCCCCCCCc--ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEE
Q 015220 165 LRCRSTRIEYIRRGKPDAGFA--LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIK 240 (411)
Q Consensus 165 L~cr~~~~~~i~~gk~~~~~~--LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIk 240 (411)
.=|-.+....+.+-+++++.+ +-. ++.-|-=+-==+.+|+-++..++|=.+||=++.+.+...++..+ .|..+.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILA--RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceee--eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence 444455555666655555432 111 11112222222578999999999999999999999988888855 899999
Q ss_pred Ee-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceee--------eeecc--eeEEeecCceeeEEEccc
Q 015220 241 IS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI--------EQFNE--KLLVKQENENLQILDVRN 309 (411)
Q Consensus 241 IS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL--------E~~~e--kllIKQe~~~LkI~dL~t 309 (411)
.. .|.|||+..+..+ ++||+|++|++.+++.- -.|.-+|+ .-+++ .+++..-++-+++|+-.+
T Consensus 146 ~~p~~~fLAvss~dG~---v~iw~~~~~~~~~tl~~---v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGK---VQIWDLQDGILSKTLTG---VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred EcCCCCEEEEEecCce---EEEEEcccchhhhhccc---CCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99 8999999999865 79999999999998553 23333333 44444 568888999999999999
Q ss_pred ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-------CceeeeeccccccCCCCccceE
Q 015220 310 FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNI 371 (411)
Q Consensus 310 ~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-------Gel~~s~e~H~~~~~~c~~n~i 371 (411)
.+..-.-++.+ +.+-|..+.-+ +..++. .||.|.|||.+ ++.++- +.|+|+|+.-++
T Consensus 220 we~~f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~----~aw~p~~n~it~ 287 (933)
T KOG1274|consen 220 WELQFKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCC----EAWKPNANAITL 287 (933)
T ss_pred ceeheeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEE----EecCCCCCeeEE
Confidence 99888777776 44448888877 556655 99999999998 333333 479999997664
No 118
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=80.57 Aligned_cols=191 Identities=13% Similarity=0.163 Sum_probs=127.5
Q ss_pred CCCCeEEEeecCCCeEEEEEeeC--ceEE--EEeccCceeEEEEe-CCEEEEE-------E-ec-------CCCceeeEE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKN--YTML--YSISDKNVQEIKIS-PGIMLLI-------F-TK-------ASGHVPLKI 261 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~--Ys~i--ysLs~~~VqeIkIS-dG~~Lai-------~-q~-------t~~~ipiKI 261 (411)
-|+|--+.+..+|.+.++|+|-. |+.= +-+.-+.+.++++- ++.++.- + || +.-.-||++
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~ 137 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHL 137 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceee
Confidence 37899999999999999999853 2211 11122245555555 3322210 0 11 223569999
Q ss_pred EEecCCcEEeEeeeccccCCcce---eeeeeccee-EEeecCceeeEEEc-ccceEEEeeccccC----CCceEEE----
Q 015220 262 LSIEDGTVLKSFNHLLHRNKKVD---FIEQFNEKL-LVKQENENLQILDV-RNFELTEVSRTEFM----TPSAFIF---- 328 (411)
Q Consensus 262 l~I~tG~~L~t~~~LL~h~K~I~---FLE~~~ekl-lIKQe~~~LkI~dL-~t~e~~~v~~T~f~----hpsAfif---- 328 (411)
||..||++-.++. -.-|.-++. .|.-++|+- |++--+..|++.|+ +.|.--.|-.|.+- ...-..+
T Consensus 138 wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~s 216 (406)
T KOG2919|consen 138 WDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFS 216 (406)
T ss_pred eeccccccccchh-hhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeecc
Confidence 9999999988755 223444443 467778776 88888999999999 55554444334331 1111111
Q ss_pred -----------------Ee-----------------ec--------eeEEEE--ecCeEEEEecC--Cceeeeecccccc
Q 015220 329 -----------------LY-----------------EN--------QLFLTF--RNRTVAVWNFR--GELVTSFEDHLLW 362 (411)
Q Consensus 329 -----------------Ly-----------------~s--------qlFlSf--sd~tI~iWn~~--Gel~~s~e~H~~~ 362 (411)
+| +. +-|+++ .|.+|..||.| +++|-.|++|..
T Consensus 217 P~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~- 295 (406)
T KOG2919|consen 217 PMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG- 295 (406)
T ss_pred CCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc-
Confidence 11 01 236677 68899999999 999999999999
Q ss_pred CCCCccce--EE-EcCCCCEEEEEecCCCCCccccCCceEEEeeecc-ee
Q 015220 363 HPDCNTNN--IY-ITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF-VT 408 (411)
Q Consensus 363 ~~~c~~n~--i~-Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t-Gk 408 (411)
+||. .| +-|+|++|+||.+|- .|++||+++ |.
T Consensus 296 ----~TNQRI~FDld~~~~~LasG~tdG----------~V~vwdlk~~gn 331 (406)
T KOG2919|consen 296 ----DTNQRILFDLDPKGEILASGDTDG----------SVRVWDLKDLGN 331 (406)
T ss_pred ----CccceEEEecCCCCceeeccCCCc----------cEEEEecCCCCC
Confidence 5553 32 689999999999985 999999988 54
No 119
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=8.5e-05 Score=75.60 Aligned_cols=185 Identities=14% Similarity=0.200 Sum_probs=119.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCce-----EE-EEeccCceeEEEEe-CCEEEEEEecCCCceee-EEEEecCCcEEeEee
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYT-----ML-YSISDKNVQEIKIS-PGIMLLIFTKASGHVPL-KILSIEDGTVLKSFN 274 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys-----~i-ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipi-KIl~I~tG~~L~t~~ 274 (411)
.|||-|+..+.|.++|||++++++ +| ..+.-+.-..|+.+ |---+.+.-...+.+++ |+-.=++|..-+++.
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v 175 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFV 175 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccc
Confidence 689999999999999999999976 23 34444466677777 32222233333344443 333345677766665
Q ss_pred ec----cc--cCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEE-EEeeceeEEEEec--CeE
Q 015220 275 HL----LH--RNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFI-FLYENQLFLTFRN--RTV 343 (411)
Q Consensus 275 ~L----L~--h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi-fLy~sqlFlSfsd--~tI 343 (411)
+. ++ |+-++.-+-+-+..- +-++++.+|-|||++ |+...--+|.- .+-.. +|--..-|+..+- --+
T Consensus 176 ~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 176 HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred cccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceeeCCCCcEEEEecCCCCc
Confidence 22 33 344444455555544 556699999999999 77665111211 11111 1222255655533 247
Q ss_pred EEEecC----Cc-----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 344 AVWNFR----GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 344 ~iWn~~----Ge-----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.||.+= |+ .+-+|.||+. .+-..+.|++-.-+++.|||- +++|||+-
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~s-----aV~~~aFsn~S~r~vtvSkDG----------~wriwdtd 308 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQS-----AVLAAAFSNSSTRAVTVSKDG----------KWRIWDTD 308 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchh-----heeeeeeCCCcceeEEEecCC----------cEEEeecc
Confidence 788753 55 4559999999 999999999999999999996 99999973
No 120
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.15 E-value=3.6e-05 Score=84.07 Aligned_cols=158 Identities=18% Similarity=0.267 Sum_probs=114.0
Q ss_pred cccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 190 ESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 190 ~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
....||+|| +|-++|.+-.++++=|+-+|+|++.+-+-. +.| ++=|.++..+ ||+..+++.-+. +..+++
T Consensus 404 ~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G---~C~fY~ 479 (712)
T KOG0283|consen 404 KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG---YCRFYD 479 (712)
T ss_pred eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEecc---EEEEEE
Confidence 345788885 899999999999999999999999887755 222 2577888888 999988887664 567888
Q ss_pred ecCCcEEeEeeeccccCCcc--------eeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeE
Q 015220 264 IEDGTVLKSFNHLLHRNKKV--------DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I--------~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlF 335 (411)
.++=++..++-..++++|++ ||.-+.++.+|+-+++++|+|||++.
T Consensus 480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-------------------------- 533 (712)
T KOG0283|consen 480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-------------------------- 533 (712)
T ss_pred ccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--------------------------
Confidence 88888888777666655543 33333344444444444444444444
Q ss_pred EEEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 336 LTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 336 lSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
=+|+.-|-|+.. .+.-.....|+||+.|||+|.|. -+.||++
T Consensus 534 --------------~~lv~KfKG~~n---~~SQ~~Asfs~Dgk~IVs~seDs----------~VYiW~~ 575 (712)
T KOG0283|consen 534 --------------KDLVHKFKGFRN---TSSQISASFSSDGKHIVSASEDS----------WVYIWKN 575 (712)
T ss_pred --------------hhhhhhhccccc---CCcceeeeEccCCCEEEEeecCc----------eEEEEeC
Confidence 445555666555 33446688999999999999888 8999997
No 121
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.15 E-value=1.3e-05 Score=82.21 Aligned_cols=180 Identities=13% Similarity=0.195 Sum_probs=129.1
Q ss_pred EEEeecCCCeEEEEEeeCceEEEEeccCc--eeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcce
Q 015220 207 VLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Ys~iysLs~~~--VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~ 284 (411)
.+++++-|+.+|+|||..=.++.++..++ |.-|.++.+-|+-++|.. -+|.|.++- .++++ .|+- ..+.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDK----tvK~wk~~~-~p~~t---ilg~-s~~~ 151 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDK----TVKQWKIDG-PPLHT---ILGK-SVYL 151 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCc----ceeeeeccC-Cccee---eecc-cccc
Confidence 46778889999999999999999999884 999999988887777765 478888765 57776 3332 2333
Q ss_pred eeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCc--eEEEEe-eceeEEEE-ecCeEEEEecC-Cceeeee---
Q 015220 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLY-ENQLFLTF-RNRTVAVWNFR-GELVTSF--- 356 (411)
Q Consensus 285 FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy-~sqlFlSf-sd~tI~iWn~~-Gel~~s~--- 356 (411)
=|--+-..=..+..|+.|-|||...-.+..= -.|+.++ .+-|=+ +..++.+. +|++|-++|++ +.+++..
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~ 229 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSS--MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT 229 (433)
T ss_pred ccccccccccccccCceeeecccccCCccce--eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee
Confidence 3333444447889999999999988777662 2344442 222222 33667777 99999999999 8877633
Q ss_pred -------------------ccccccCCCC---------------ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 357 -------------------EDHLLWHPDC---------------NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 357 -------------------e~H~~~~~~c---------------~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
|||-+|.-|- .+-.|.-||.|+-++|||=|+ ||.|+
T Consensus 230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk----------sIRIf 299 (433)
T KOG0268|consen 230 MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK----------SIRIF 299 (433)
T ss_pred ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc----------eEEEe
Confidence 3333322111 455788899999999999999 99999
Q ss_pred eecce
Q 015220 403 LLMFV 407 (411)
Q Consensus 403 ~i~tG 407 (411)
..--|
T Consensus 300 ~~~~~ 304 (433)
T KOG0268|consen 300 PVNHG 304 (433)
T ss_pred ecCCC
Confidence 76554
No 122
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.14 E-value=0.011 Score=58.35 Aligned_cols=206 Identities=11% Similarity=0.106 Sum_probs=132.6
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC-ceEEE---Eec------------cCceeEEEEe-CCEEEEEEecCCC
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLY---SIS------------DKNVQEIKIS-PGIMLLIFTKASG 255 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iy---sLs------------~~~VqeIkIS-dG~~Lai~q~t~~ 255 (411)
..|-++.+|+....+++++-.++++-|+++.. .++-. .+. ..+.+.+.++ ||.+|++.+--..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 56899999999999999999999999999988 33222 221 2277899999 8888888887777
Q ss_pred ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--eeEEe-ecCceeeEEEcc--cceEEEe--eccc---cC---C
Q 015220 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVK-QENENLQILDVR--NFELTEV--SRTE---FM---T 322 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIK-Qe~~~LkI~dL~--t~e~~~v--~~T~---f~---h 322 (411)
++.+-=++=++|++...-..-++.-.-..-|..+++ .+++. +.++.|-++++. +++...+ -.|+ +. .
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 655444444455564422234566666777888888 45444 567889999999 5544431 1122 11 2
Q ss_pred CceEEEEe-eceeEEEE-ecCeEEEEecC---CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 323 PSAFIFLY-ENQLFLTF-RNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 323 psAfifLy-~sqlFlSf-sd~tI~iWn~~---Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
|+++.+-. .+.+|++= .+++|.+++++ |.|.. .+... ...-.-..+.++|||++|+.++.+. +
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~--~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s---------~ 314 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL--VQTVP-TGGKFPRHFAFSPDGRYLYVANQDS---------N 314 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE--EEEEE-ESSSSEEEEEE-TTSSEEEEEETTT---------T
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE--EEEEe-CCCCCccEEEEeCCCCEEEEEecCC---------C
Confidence 33332221 22677777 77899999995 44432 11111 0011247899999999999988664 4
Q ss_pred eEEEeee--cceeee
Q 015220 398 KLFVSLL--MFVTCK 410 (411)
Q Consensus 398 tI~i~~i--~tGk~~ 410 (411)
+|.++++ .||++.
T Consensus 315 ~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCcEE
Confidence 8998877 688864
No 123
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=9.8e-05 Score=75.04 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=137.4
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
..+|..|+.++.++.+-+||+-|...-..|++| -|+.+.-| ||.+|+++..-. .+++||+-.|.+++.+.+
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~---si~lwDl~~gs~l~rirf--- 105 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW---SIKLWDLLKGSPLKRIRF--- 105 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc---eeEEEeccCCCceeEEEc---
Confidence 468999999999999999999999988889988 89999999 999999988776 479999999999998664
Q ss_pred cCCcceeeeeeccee---EEeecCceeeEEEcccceEEEeeccccCC--CceEEEEeec--eeEEEE-ecCeEEEEecC-
Q 015220 279 RNKKVDFIEQFNEKL---LVKQENENLQILDVRNFELTEVSRTEFMT--PSAFIFLYEN--QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 279 h~K~I~FLE~~~ekl---lIKQe~~~LkI~dL~t~e~~~v~~T~f~h--psAfifLy~s--qlFlSf-sd~tI~iWn~~- 349 (411)
..||-+..-++-+. +.-+=.+.=.+.++..+.-..+|..-.+. .+|=.-++.. ++-+|+ +.|++.|+|.+
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 35666666665544 33333333555566554444433322111 1111112222 778888 99999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
-+.+.+|.--. -.+++.|..+--|+.++--|.|+ .|..+++.
T Consensus 185 ~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDR----------vIR~ye~~ 226 (405)
T KOG1273|consen 185 LECVASFRITS----VQAIKQIIVSRKGRFLIINTSDR----------VIRTYEIS 226 (405)
T ss_pred heeeeeeeech----heeeeEEEEeccCcEEEEecCCc----------eEEEEehh
Confidence 88888876555 24899999999999999999999 88888875
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.11 E-value=4.7e-05 Score=82.20 Aligned_cols=176 Identities=12% Similarity=0.145 Sum_probs=112.4
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEE--eccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEec--------------
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYS--ISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIE-------------- 265 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iys--Ls~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~-------------- 265 (411)
-.|+.-+.|+++|+||+++.++.-. .-++ -|..+.+. |--+++++-... .++|||+-
T Consensus 113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg---~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG---EILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCC---cEEEEEEeccchhhHHHHhhhh
Confidence 3566677799999999999998744 3333 45555444 333333332222 24566653
Q ss_pred ----CC--cEEeEee----eccccCCccee---eeeecceeEEeec---CceeeEEEcccce------EEEeeccccCC-
Q 015220 266 ----DG--TVLKSFN----HLLHRNKKVDF---IEQFNEKLLVKQE---NENLQILDVRNFE------LTEVSRTEFMT- 322 (411)
Q Consensus 266 ----tG--~~L~t~~----~LL~h~K~I~F---LE~~~ekllIKQe---~~~LkI~dL~t~e------~~~v~~T~f~h- 322 (411)
+| ++.+..+ --+.+++-|+- .-.|-|..+|++. +.-||+|||++.. +..+.....-.
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence 33 1221111 13455666666 6778888878774 5699999999843 33322222210
Q ss_pred -CceEEEEe--e--ceeEEEEecCeEEEEecCCc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 323 -PSAFIFLY--E--NQLFLTFRNRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 323 -psAfifLy--~--sqlFlSfsd~tI~iWn~~Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.-.|+.|- - +.||++-.|++|-.||..+. ++..|.+|+. ....+.=-+|||+..|.||+-|.
T Consensus 270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~---~sf~vks~lSpd~~~l~SgSsd~ 339 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN---SSFYVKSELSPDDCSLLSGSSDE 339 (720)
T ss_pred ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc---ceeeeeeecCCCCceEeccCCCc
Confidence 12244433 2 37888889999999999965 7888999887 23455566899999999999998
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=8.9e-05 Score=79.83 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=136.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe---CCEEEEEEecCC--------C--------------
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS---PGIMLLIFTKAS--------G-------------- 255 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS---dG~~Lai~q~t~--------~-------------- 255 (411)
|+.|.-|++++.|++.|||-+.|.-+|+... |.+|+.|..+ +--+||+.-... .
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence 3489999999999999999999999999887 6689988887 334455544333 0
Q ss_pred ----ce---eeEEEEecCC-cEEeEeeeccccCCcceeeeeecceeEEe-----ecCceeeEEEcccceEEEeeccccCC
Q 015220 256 ----HV---PLKILSIEDG-TVLKSFNHLLHRNKKVDFIEQFNEKLLVK-----QENENLQILDVRNFELTEVSRTEFMT 322 (411)
Q Consensus 256 ----~i---piKIl~I~tG-~~L~t~~~LL~h~K~I~FLE~~~ekllIK-----Qe~~~LkI~dL~t~e~~~v~~T~f~h 322 (411)
-- -+-.|+=..- +..+..+..+.|-|+|.-|+-|..+=+++ +++..+.|++|.++...+--+--.++
T Consensus 489 ~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~ 568 (733)
T KOG0650|consen 489 APNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL 568 (733)
T ss_pred CCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCc
Confidence 00 0112322200 11112334567889999999887665554 47789999999988777522234567
Q ss_pred CceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 323 PSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 323 psAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
+.++.|=-.+-.||.-.-+.|+||||- ++||..|.--.- -+.+++|.|.||-||.|+.|+ .+-.
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~k-----wiS~msihp~GDnli~gs~d~----------k~~W 633 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSK-----WISSMSIHPNGDNLILGSYDK----------KMCW 633 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCe-----eeeeeeecCCCCeEEEecCCC----------eeEE
Confidence 777777777777777788999999999 999986655444 367999999999999999998 7766
Q ss_pred eeec
Q 015220 402 SLLM 405 (411)
Q Consensus 402 ~~i~ 405 (411)
+|+.
T Consensus 634 fDld 637 (733)
T KOG0650|consen 634 FDLD 637 (733)
T ss_pred EEcc
Confidence 6664
No 126
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.10 E-value=0.00011 Score=82.19 Aligned_cols=204 Identities=11% Similarity=0.084 Sum_probs=147.1
Q ss_pred CcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC------------------ceEEEEeccC--ceeEEEEe-
Q 015220 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------------------YTMLYSISDK--NVQEIKIS- 242 (411)
Q Consensus 184 ~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~------------------Ys~iysLs~~--~VqeIkIS- 242 (411)
..|++-..-.-+.---+=-+||+-|+++++|..+-||.+.. |+..+.+..| +|+++.-|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34555433333333333468999999999999999999993 4466666655 99999999
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEccc-----------
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRN----------- 309 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t----------- 309 (411)
|+.+|+...-.+ .+-||+..|++.++. +=+|+..|-=+-.-|-+.++++ .++.||||+..+
T Consensus 140 ~~~~lvS~s~Dn---sViiwn~~tF~~~~v---l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 140 DDSLLVSVSLDN---SVIIWNAKTFELLKV---LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CccEEEEecccc---eEEEEccccceeeee---eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 888887766544 577999999999998 6688888888888887777765 889999999544
Q ss_pred --------------------------------------ceEEEeeccccCCCceEEEEeec--------e----------
Q 015220 310 --------------------------------------FELTEVSRTEFMTPSAFIFLYEN--------Q---------- 333 (411)
Q Consensus 310 --------------------------------------~e~~~v~~T~f~hpsAfifLy~s--------q---------- 333 (411)
++.+.+..++-+|..+..++..| +
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 12223444555677777776644 3
Q ss_pred --eEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 334 --LFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 334 --lFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+..++ +|++|.||+.- --|+ |-=|.+ -+-.+.-+.=||||-.|+-+|-|- ||.+.+++-+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~l--f~~SI~DmsWspdG~~LfacS~DG----------tV~~i~Fee~ 357 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPL--FVIHNL--FNKSIVDMSWSPDGFSLFACSLDG----------TVALIHFEEK 357 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCch--hhhhhh--hcCceeeeeEcCCCCeEEEEecCC----------eEEEEEcchH
Confidence 55677 99999999994 2222 233333 123567788899999999999996 8888877643
No 127
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=0.00052 Score=70.51 Aligned_cols=224 Identities=15% Similarity=0.201 Sum_probs=167.3
Q ss_pred EeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC-----CcceeecccCCCCeEEeeCCCCeEEEeecCCCeE
Q 015220 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (411)
Q Consensus 143 fyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~-----~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~y 217 (411)
|+| .|..-...|+-.+|.|.-.+|-...- -+..+.+ --||.+--+ +++.-.|....
T Consensus 10 ~~~-~Nqd~~~lsvGs~~Gyk~~~~~~~~k----~~~~~~~~~~IvEmLFSSSLv--------------aiV~~~qpr~L 70 (391)
T KOG2110|consen 10 FIG-FNQDSTLLSVGSKDGYKIFSCSPFEK----CFSKDTEGVSIVEMLFSSSLV--------------AIVSIKQPRKL 70 (391)
T ss_pred eee-eccceeEEEccCCCceeEEecCchHH----hhcccCCCeEEEEeeccccee--------------EEEecCCCceE
Confidence 444 55566677888888877666665532 1111112 136665322 34444555788
Q ss_pred EEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE
Q 015220 218 KVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV 295 (411)
Q Consensus 218 kVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI 295 (411)
||-+.|--+-|=.+. ...|..||+- +.+++++-.. |-|+||.|=++|+|+.--=++-+-+..+-..+++=++
T Consensus 71 kv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~------IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES------IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred EEEEcccCceEEEEecCCceEEEEEccceEEEEEccc------EEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 999999888887776 5699999999 6665554432 7789999999999977433455668999999997777
Q ss_pred ee----cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEEecC--eEEEEecC-CceeeeeccccccCCC
Q 015220 296 KQ----ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTFRNR--TVAVWNFR-GELVTSFEDHLLWHPD 365 (411)
Q Consensus 296 KQ----e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSfsd~--tI~iWn~~-Gel~~s~e~H~~~~~~ 365 (411)
+= ...-+.|||+-+=+... +.-.|....-+|+.+ .+++|.|++ -|||+... |+++..|-.=.. -
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~ 218 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---P 218 (391)
T ss_pred EecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---e
Confidence 65 45679999999988887 666899999999998 789999655 78999988 999998876444 5
Q ss_pred CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 366 c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|++-++.-+||+++|.+-|.-+ ||+|+-|++-
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~Te----------TVHiFKL~~~ 250 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTE----------TVHIFKLEKV 250 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCC----------eEEEEEeccc
Confidence 8999999999999999888776 9999988753
No 128
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.00068 Score=68.53 Aligned_cols=173 Identities=14% Similarity=0.030 Sum_probs=106.7
Q ss_pred CeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 215 SIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+.+.+||+.+... ..|+. +.+...+.| ||..|+.....+...-|.+|++.+|+...- -.....+.....++|
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l----~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV----GNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe----ecCCCcccCcEECCC
Confidence 4666777755543 44543 379999999 898888877666677899999999987431 223334455666766
Q ss_pred ee--EEe-ec--CceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEE-ecC--eEEEEecCCceeeeeccc
Q 015220 292 KL--LVK-QE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNR--TVAVWNFRGELVTSFEDH 359 (411)
Q Consensus 292 kl--lIK-Qe--~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~--tI~iWn~~Gel~~s~e~H 359 (411)
+- ++. +. +..|-+||+.+++...+.. ++........+ .+.++- +++ .|-+||++|.-++.+..+
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~----~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~ 332 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD----SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG 332 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccC----CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC
Confidence 63 222 33 3457777999998876522 33222222222 333322 333 577788886655655544
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.. .......||||+.|+..+.+. +...|-+||+.+|+
T Consensus 333 ~~-----~~~~~~~SpdG~~ia~~~~~~-------~~~~i~~~d~~~~~ 369 (435)
T PRK05137 333 GG-----RYSTPVWSPRGDLIAFTKQGG-------GQFSIGVMKPDGSG 369 (435)
T ss_pred CC-----cccCeEECCCCCEEEEEEcCC-------CceEEEEEECCCCc
Confidence 33 345678999999998766432 12367788876553
No 129
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.07 E-value=0.00047 Score=67.58 Aligned_cols=177 Identities=15% Similarity=0.045 Sum_probs=108.7
Q ss_pred CeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 215 SIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+.+-++|.... ....|++. .+...+.| ||..|+.........-|.+|++.+|+...-. .+...+.....+++
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~----~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA----SFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee----cCCCCccceEECCC
Confidence 34556666433 34445544 48888899 8988888776666677999999999765432 22233444666776
Q ss_pred e--eEEe-e--cCceeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ecC--eEEEEecCCceeeeecccccc
Q 015220 292 K--LLVK-Q--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RNR--TVAVWNFRGELVTSFEDHLLW 362 (411)
Q Consensus 292 k--llIK-Q--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd~--tI~iWn~~Gel~~s~e~H~~~ 362 (411)
+ +++. . +...|.+||+.+++...+...... .....|.. .++++++. +++ .|-+|++.+.-.+.+..+..
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~- 322 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG- 322 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-
Confidence 5 3332 2 345699999999887765321110 11111222 23454443 333 57777887444444544433
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
....+.+||||+.|+..+.+. +...|.++|+.+|+.
T Consensus 323 ----~~~~~~~spdg~~i~~~~~~~-------~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 323 ----YNASPSWSPDGDLIAFVHREG-------GGFNIAVMDLDGGGE 358 (417)
T ss_pred ----CccCeEECCCCCEEEEEEccC-------CceEEEEEeCCCCCe
Confidence 345678999999999887663 446899999988754
No 130
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.07 E-value=2.7e-05 Score=80.57 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccCCcceeee--eecceeEEee--cCceeeEEEcccceEEE---
Q 015220 243 PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQ--ENENLQILDVRNFELTE--- 314 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE--~~~ekllIKQ--e~~~LkI~dL~t~e~~~--- 314 (411)
+..|||+--....--...|+-|+ +|++-+..-..=||+.+|==+. .|||.. |++ |+.+++||.+-.+-+..
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~v-IASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCV-IASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCce-eecCCCCceEEEEECCCcccccCcc
Confidence 44455555555544444444443 6766665555557777664333 355554 555 78899999886543332
Q ss_pred -eeccccCCCceEEEEe-----eceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 315 -VSRTEFMTPSAFIFLY-----ENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 315 -v~~T~f~hpsAfifLy-----~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
=-..+.+|..-+=-++ .|=|+-+++|++|-+||.. |+-+-++. |-. -+-++-.+.||.++++.|+|+
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd-----~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPD-----MVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCC-----eEEEEEeccCCceeeeecccc
Confidence 1114555555443333 3344555599999999999 99777776 666 788999999999999999999
Q ss_pred CCCccccCCceEEEeeecceeee
Q 015220 388 SDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 388 ~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+|.|||..+|+++
T Consensus 196 ----------kvRv~dpr~~~~v 208 (472)
T KOG0303|consen 196 ----------KVRVIDPRRGTVV 208 (472)
T ss_pred ----------eeEEEcCCCCcEe
Confidence 9999999999975
No 131
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.07 E-value=5.3e-05 Score=84.79 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=120.0
Q ss_pred CCCeEEEeec--CCCeEEEEEeeC-c-----------eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec
Q 015220 203 VNGKVLTYSA--QDSIYKVFDLKN-Y-----------TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 203 ~NGkiLt~~~--~ds~ykVWdL~~-Y-----------s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
++|+-++.++ .|+..+||++.. + +++-+..++ -|.=||.| ||+.||++.-. --+.||.-.
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD---~~v~iW~~~ 99 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD---RLVMIWERA 99 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc---ceEEEeeec
Confidence 5677778888 688999999876 2 234455555 78889999 99999988765 345677776
Q ss_pred CCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR 341 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~ 341 (411)
. ....+ ..|.+... .+-|.+++-.++=+|+.-+.=|..+ .+|+|. -|+
T Consensus 100 ~-~~~~~---~fgs~g~~------------------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 100 E-IGSGT---VFGSTGGA------------------------KNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred c-cCCcc---cccccccc------------------------cccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 5 22222 22222111 1335555555666788888888777 888898 899
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+|-|||-+ .++++.++||++ -++-+.+.|-|+++.|=+-|+ ||+||.+.+
T Consensus 152 sViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDr----------tikvwrt~d 202 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDR----------TLKVWRTSD 202 (942)
T ss_pred eEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCc----------eEEEEEccc
Confidence 99999999 999999999999 999999999999999999999 999999543
No 132
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.07 E-value=8.3e-06 Score=55.19 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=37.6
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
|+++++|++|.. .++.+..+|++.+++|+|.|. +|+|||
T Consensus 1 g~~~~~~~~h~~-----~i~~i~~~~~~~~~~s~~~D~----------~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-----SINSIAWSPDGNFLASGSSDG----------TIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-----SEEEEEEETTSSEEEEEETTS----------EEEEEE
T ss_pred CeEEEEEcCCCC-----cEEEEEEecccccceeeCCCC----------EEEEEC
Confidence 689999999999 999999999999999999998 999998
No 133
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.0006 Score=69.36 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=111.5
Q ss_pred CCCeEEEeec---CCCeEEEEEeeCceE--EEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSA---QDSIYKVFDLKNYTM--LYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~---~ds~ykVWdL~~Ys~--iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|.. .+..+.+||+.+.+. |.+.. ..+...+.| ||..|++.........|.+|++.+|++.. +
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----l 282 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----V 282 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----c
Confidence 6888888743 356788999988753 33332 246678999 99888876555555678999999998654 3
Q ss_pred cccCCcceeeeeeccee--EEeec-CceeeEE--EcccceEEEeeccccCCC-ceEEEEeec-eeEEEEe-c--CeEEEE
Q 015220 277 LHRNKKVDFIEQFNEKL--LVKQE-NENLQIL--DVRNFELTEVSRTEFMTP-SAFIFLYEN-QLFLTFR-N--RTVAVW 346 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekl--lIKQe-~~~LkI~--dL~t~e~~~v~~T~f~hp-sAfifLy~s-qlFlSfs-d--~tI~iW 346 (411)
..+...+.....++++- +..+. +...+|| |+.+++..++. ..++. ....+-... .+.++-. + ..|.+|
T Consensus 283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee--cCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 33334555667777654 33332 3344555 77888777652 21111 112222211 3333322 2 358889
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
|+.+.-++.+.... ...+..+||||..|+..+.+. +.+.+.++++
T Consensus 361 dl~~g~~~~Lt~~~------~~~~p~~SpDG~~i~~~s~~~-------~~~~l~~~~~ 405 (429)
T PRK03629 361 DLATGGVQVLTDTF------LDETPSIAPNGTMVIYSSSQG-------MGSVLNLVST 405 (429)
T ss_pred ECCCCCeEEeCCCC------CCCCceECCCCCEEEEEEcCC-------CceEEEEEEC
Confidence 99844455555321 223677999999999988874 2346777776
No 134
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.01 E-value=7.2e-06 Score=85.92 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=139.8
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
.||+-|+..+-.+-+--||..|.+++.+|. -|.|.+++.= +.+|+|+.|..--++| | ..|+.||- |.+.
T Consensus 139 rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvY----D-~~GtElHC----lk~~ 209 (545)
T KOG1272|consen 139 RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVY----D-NNGTELHC----LKRH 209 (545)
T ss_pred CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEe----c-CCCcEEee----hhhc
Confidence 599999999999999999999999999998 4588899887 9999999998655544 3 57999997 4455
Q ss_pred CcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceeeee
Q 015220 281 KKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 281 K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~ 356 (411)
-+|.-||-.+=-.|+.. +..=|+-.|+-+|++.-=-+|.-+......-=-.|-+.=++ ++|||.+|.+. -|++.-+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 66666666665556555 55569999999998874222322211111111123444556 99999999999 8999999
Q ss_pred ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 357 e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
--|.+ -++.|+|-++|...+....|. .+|||||.+
T Consensus 290 LcH~g-----~V~siAv~~~G~YMaTtG~Dr----------~~kIWDlR~ 324 (545)
T KOG1272|consen 290 LCHRG-----PVSSIAVDRGGRYMATTGLDR----------KVKIWDLRN 324 (545)
T ss_pred HhcCC-----CcceEEECCCCcEEeeccccc----------ceeEeeecc
Confidence 99999 999999999999999999999 999999975
No 135
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.00 E-value=3.4e-05 Score=75.97 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=95.6
Q ss_pred ccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
|=.++-+|..+.-- +.|-|-.-.+..+++||.++|.+++ |+-+|-..+.=++-+ .-|.+. .|+-+.+||..
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34455555554443 3445666778899999999999999 999999999987755 568887 99999999999
Q ss_pred -CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|..+|.|-+|.+ .+|+|...++--+++|||-|. ++.+||-.+
T Consensus 90 TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~----------s~r~wDCRS 132 (307)
T KOG0316|consen 90 TGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDS----------SVRLWDCRS 132 (307)
T ss_pred cCeeeeecccccc-----eeeEEEecCcceEEEeccccc----------eeEEEEccc
Confidence 999999999999 999999999999999999999 999998543
No 136
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=2.2e-05 Score=77.71 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=81.2
Q ss_pred eeecceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC-Cceeeeeccc
Q 015220 287 EQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 287 E~~~ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~-Gel~~s~e~H 359 (411)
|-+.+.++.+|++..|||||+-- ..++. -...|..++..+..+ +.||+. -|+||.+|+.+ +.-++||.||
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~~s~Pi~---~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTMPSKPIH---KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred CCCcceEEEEecCceEEEeccCCCCcchh---HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 44445558899999999999544 23333 455799999999987 678888 88999999999 9999999998
Q ss_pred cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 360 ~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
-. |.-..++=-.++++..|.|.|. +.++||+..
T Consensus 147 ~~----~Iy~a~~sp~~~nlfas~Sgd~----------~l~lwdvr~ 179 (311)
T KOG0277|consen 147 NS----CIYQAAFSPHIPNLFASASGDG----------TLRLWDVRS 179 (311)
T ss_pred cc----EEEEEecCCCCCCeEEEccCCc----------eEEEEEecC
Confidence 77 5544444445899999988886 999999853
No 137
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.97 E-value=0.00073 Score=60.55 Aligned_cols=138 Identities=13% Similarity=0.003 Sum_probs=91.3
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeeceeEEE
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLT 337 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~sqlFlS 337 (411)
|..||..||+.+++..+-=....++...-..++.+++.+.++.|..||..+|+..- ... -.....-..++...+|+.
T Consensus 5 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~v~v~ 82 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVVDGGRVYVG 82 (238)
T ss_dssp EEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeeecccccccc
Confidence 57899999999999753101222332233377777888899999999999998653 211 111111136667788888
Q ss_pred EecCeEEEEecC-Cceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 338 FRNRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 338 fsd~tI~iWn~~-Gel~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..++.+..+|.. |+++-+. ......++-...-...+ +++.++.++.+. .|...|+.||+.+
T Consensus 83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g----------~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV--DGDRLYVGTSSG----------KLVALDPKTGKLL 145 (238)
T ss_dssp ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE--ETTEEEEEETCS----------EEEEEETTTTEEE
T ss_pred cceeeeEecccCCcceeeeeccccccccccccccCceE--ecCEEEEEeccC----------cEEEEecCCCcEE
Confidence 889999999966 9998874 54433223112222333 388888877754 8999999999875
No 138
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0013 Score=66.57 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=108.5
Q ss_pred CCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|... +..+.+||+.+.+.. .|++ ......++| ||..|++....+...-|.+|++.+|+... +
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----l 287 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----L 287 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----C
Confidence 68888887653 456899999887643 2332 244578899 88777665545555678899999998643 2
Q ss_pred cccCCcceeeeeecce--eEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEe--eceeEEEE-ecC--eEEEE
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTF-RNR--TVAVW 346 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy--~sqlFlSf-sd~--tI~iW 346 (411)
-.+.........++++ ++..++ ...|-++|+.+++..++... ++...-..+. .+.+.++- .++ .|.+|
T Consensus 288 t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 288 TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 2222222334556654 444432 23466678888887765311 1111111111 12343332 222 69999
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+.+.-.+.+.... .......||||+.|+..+.+. +.+.|.++|+..+
T Consensus 366 d~~~g~~~~Lt~~~------~~~~p~~spdG~~i~~~s~~~-------g~~~L~~~~~~g~ 413 (433)
T PRK04922 366 DLSTGSVRTLTPGS------LDESPSFAPNGSMVLYATREG-------GRGVLAAVSTDGR 413 (433)
T ss_pred ECCCCCeEECCCCC------CCCCceECCCCCEEEEEEecC-------CceEEEEEECCCC
Confidence 99844344554321 123467999999998777653 3457888887543
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=0.00026 Score=73.87 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=114.2
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEec----------
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIE---------- 265 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~---------- 265 (411)
+.--.--||++.+.|+|+++|||.+.++-.+++++ +||.+..- ..++|+.+.-- . .++|.|..
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D-~--~V~l~D~R~~~~s~~~wk 327 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD-G--TVALKDCRDPSNSGKEWK 327 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc-c--eEEeeeccCccccCceEE
Confidence 34445569999999999999999999999999966 99988876 56666555421 1 12222322
Q ss_pred -CCcEEeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEcccc-eEEEeeccccCCCceEEEEeec----eeEEEE
Q 015220 266 -DGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYEN----QLFLTF 338 (411)
Q Consensus 266 -tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfifLy~s----qlFlSf 338 (411)
+|++.+- .-.| +.+.. ++-.++..++=+|+|+- ++.- |+-.|-..+..|..| .++.|.
T Consensus 328 ~~g~VEkv---~w~~---------~se~~f~~~tddG~v~~~D~R~~~~~vw---t~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 328 FDGEVEKV---AWDP---------HSENSFFVSTDDGTVYYFDIRNPGKPVW---TLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred eccceEEE---EecC---------CCceeEEEecCCceEEeeecCCCCCcee---EEEeccCCcceEEecCCCCcceeec
Confidence 4444443 1222 33333 34458889999999995 6666 788888888888776 567777
Q ss_pred -ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.++++.+|+|.++-=+.--.|..- .--+-..+.-||-....++...+ +-+.|||+.|+.
T Consensus 393 s~d~~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~a~~la~GG~k---------~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 393 STDKVVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDVAFTLAFGGEK---------AVLRVWDIFTNS 452 (463)
T ss_pred cccceEEEEeecCCCCccccccccc--ccceeecccCCCcceEEEecCcc---------ceEEEeecccCh
Confidence 899999999997633322223220 00011122233333333333332 269999999864
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.0023 Score=64.58 Aligned_cols=245 Identities=17% Similarity=0.157 Sum_probs=176.2
Q ss_pred EEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEE
Q 015220 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT 209 (411)
Q Consensus 130 ~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt 209 (411)
.|+..|.+-|-+|=|...++-|++.| =+ .+|.-+.++...+ ++++.-+-||-... |=| .....
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvss----WD-gslrlYdv~~~~l-~~~~~~~~plL~c~---------F~d--~~~~~ 69 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSS----WD-GSLRLYDVPANSL-KLKFKHGAPLLDCA---------FAD--ESTIV 69 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEe----cc-CcEEEEeccchhh-hhheecCCceeeee---------ccC--CceEE
Confidence 57888999999999985555555433 23 5677787777644 45667777776652 322 45566
Q ss_pred eecCCCeEEEEEeeCceEEEEeccC-ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceee
Q 015220 210 YSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL 286 (411)
.+.-|+++|+.||.+.+...-.+++ -|+-|.-+ .|.+++-+=. --||+||--+-....+ +-..|+|..|
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD----~~ik~wD~R~~~~~~~----~d~~kkVy~~ 141 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWD----KTIKFWDPRNKVVVGT----FDQGKKVYCM 141 (323)
T ss_pred EeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccC----ccEEEEeccccccccc----cccCceEEEE
Confidence 7788999999999999988888876 67777777 6665443322 2489999887555554 4556899999
Q ss_pred eeecceeEEeecCceeeEEEcccceEEEe--eccccCCCceEEEEeeceeEEEE-ecCeEEEEecCCc-----eeeeecc
Q 015220 287 EQFNEKLLVKQENENLQILDVRNFELTEV--SRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFRGE-----LVTSFED 358 (411)
Q Consensus 287 E~~~ekllIKQe~~~LkI~dL~t~e~~~v--~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~Ge-----l~~s~e~ 358 (411)
-+..+.|++.-.+.+..+|||++-+.... ...+...-..+-++-+.+=|+.. -+|-|.+=.|+-. ..=.|.=
T Consensus 142 ~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 142 DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 99999999999999999999999443321 11222333444555544556666 8888877766622 4447888
Q ss_pred ccccCCCCc----cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 359 HLLWHPDCN----TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 359 H~~~~~~c~----~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|..-..+.+ +|+|+.+|=-.++++|..|- -|++||+.+-|=
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG----------~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG----------IVNIWDLFNRKR 266 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCc----------eEEEccCcchhh
Confidence 888666655 69999999999999999885 999999988663
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.92 E-value=6.3e-05 Score=82.48 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=128.0
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEE--eccCceeEEEEeC---CEEEEEEecCCCceeeEEEEec-CCcE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKNVQEIKISP---GIMLLIFTKASGHVPLKILSIE-DGTV 269 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iys--Ls~~~VqeIkISd---G~~Lai~q~t~~~ipiKIl~I~-tG~~ 269 (411)
-=+.|-.+--.+|++++||+++|.|||+--+-..+ =..|-|-+|++|+ ..|.++ +.--++.+|||- .-+.
T Consensus 137 ~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~----~dsG~lqlWDlRqp~r~ 212 (839)
T KOG0269|consen 137 NKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI----HDSGYLQLWDLRQPDRC 212 (839)
T ss_pred eeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe----cCCceEEEeeccCchhH
Confidence 35778888889999999999999999998664432 2456899999993 345444 445689999995 4455
Q ss_pred EeEeeeccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEee--ccc------cCCCceEEEEeeceeEEEEe
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVS--RTE------FMTPSAFIFLYENQLFLTFR 339 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v~--~T~------f~hpsAfifLy~sqlFlSfs 339 (411)
.+. +-.|+-||-.+--+|..-+|+.+ +..+||||+-+++...+. .|. ..-|+--.-|++. ...-
T Consensus 213 ~~k---~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc---smv~ 286 (839)
T KOG0269|consen 213 EKK---LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC---SMVV 286 (839)
T ss_pred HHH---hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhh---hccc
Confidence 555 67899999999999988899995 589999999976654411 111 0022222222221 1236
Q ss_pred cCeEEEEecC--CceeeeeccccccCCCCccceEE-EcCCCCEEEEEecCCC
Q 015220 340 NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY-ITSDQDLIISYCKADS 388 (411)
Q Consensus 340 d~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~-Is~Dqd~iiS~~~d~~ 388 (411)
|..|.|||.+ ==|.++|+-|-. .+..|+ =+.|-+++.|++||..
T Consensus 287 dtsV~VWDvrRPYIP~~t~~eH~~-----~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYATFLEHTD-----SVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred cceEEEEeeccccccceeeeccCc-----cccceeccCCCceeeEeecCccH
Confidence 8899999999 338899999988 555544 4568889999999963
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.91 E-value=2.2e-05 Score=85.96 Aligned_cols=134 Identities=10% Similarity=0.137 Sum_probs=105.4
Q ss_pred eeEEEEecC---CcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--
Q 015220 258 PLKILSIED---GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-- 332 (411)
Q Consensus 258 piKIl~I~t---G~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-- 332 (411)
.|-+|||.- -+.+..|+--=..-..++|-...+..++=.+-+..+|+||++..+... |.|...+++==|..+
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPG 187 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc---cccccchhhhceeeccC
Confidence 367899986 444334331111223566777777788888899999999999999998 888888876655544
Q ss_pred --eeEEEE-ecCeEEEEecC-Cc-eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 333 --QLFLTF-RNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 333 --qlFlSf-sd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
..|++. .+|.+++||+| .+ ...-|.-|.+ .+-.+--.|+|.+|.+|.-|+ +|+|||-.++
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-----pV~c~nwhPnr~~lATGGRDK----------~vkiWd~t~~ 252 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-----PVLCLNWHPNREWLATGGRDK----------MVKIWDMTDS 252 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccC-----ceEEEeecCCCceeeecCCCc----------cEEEEeccCC
Confidence 778888 88899999999 55 4559999999 788888999999999999999 9999998876
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
+.
T Consensus 253 ~~ 254 (839)
T KOG0269|consen 253 RA 254 (839)
T ss_pred Cc
Confidence 54
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.89 E-value=0.00058 Score=71.36 Aligned_cols=227 Identities=18% Similarity=0.181 Sum_probs=143.6
Q ss_pred cCCCeEEEEEeEecCCCceeeeEeeehhh----hhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEE
Q 015220 146 KNNDSLITVSVYASDNFSSLRCRSTRIEY----IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (411)
Q Consensus 146 ~~n~slI~vSv~~sd~~s~L~cr~~~~~~----i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWd 221 (411)
+..|+||++--..+|. |+|.|+.-..++ +..--+-..+|| +.+-|.||- =++.-|--++-+.=+..+.|||
T Consensus 134 ~psDnlIl~ar~eddv-s~LEvYVyn~~e~nlYvHHD~ilpafPL-C~ewld~~~---~~~~~gNyvAiGtmdp~IeIWD 208 (463)
T KOG0270|consen 134 KPSDNLILCARNEDDV-SYLEVYVYNEEEENLYVHHDFILPAFPL-CIEWLDHGS---KSGGAGNYVAIGTMDPEIEIWD 208 (463)
T ss_pred ccCCcEEEEeeccCCc-eEEEEEEEcCCCcceeEecceeccCcch-hhhhhhcCC---CCCCCcceEEEeccCceeEEec
Confidence 4568999976555555 999999987553 222222233333 223333311 1444454566666788999999
Q ss_pred eeCce---EEEEeccC----ceeE--------------EEEe----CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 222 LKNYT---MLYSISDK----NVQE--------------IKIS----PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 222 L~~Ys---~iysLs~~----~Vqe--------------IkIS----dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
|-=-- +-.+|-.. .... ..++ -.++||...-- --+|+||+.+|++-.++.
T Consensus 209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD---~TV~lWD~~~g~p~~s~~-- 283 (463)
T KOG0270|consen 209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD---KTVKLWDVDTGKPKSSIT-- 283 (463)
T ss_pred cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC---ceEEEEEcCCCCcceehh--
Confidence 86433 22333311 1111 1111 22334433332 247999999999999944
Q ss_pred cccCCcceeeeeec---ceeEEeecCceeeEEEccc----ceEEE----eeccccCCCceEEEEeeceeEEEE-ecCeEE
Q 015220 277 LHRNKKVDFIEQFN---EKLLVKQENENLQILDVRN----FELTE----VSRTEFMTPSAFIFLYENQLFLTF-RNRTVA 344 (411)
Q Consensus 277 L~h~K~I~FLE~~~---ekllIKQe~~~LkI~dL~t----~e~~~----v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~ 344 (411)
+|.|+||.++.++ +.||--+-+....+.|++. +.-++ |-+-.|.|-+. ..|+.. .||+++
T Consensus 284 -~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-------~~f~~~tddG~v~ 355 (463)
T KOG0270|consen 284 -HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-------NSFFVSTDDGTVY 355 (463)
T ss_pred -hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-------eeEEEecCCceEE
Confidence 8999999999986 4556666779999999993 33333 11122222222 234444 899999
Q ss_pred EEecC--CceeeeeccccccCCCCccceEEEcCC-CCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 345 VWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 345 iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
-.|.| |+++.++.-|-. .+-.|-.++. --++.++++|+ ++|+|++.
T Consensus 356 ~~D~R~~~~~vwt~~AHd~-----~ISgl~~n~~~p~~l~t~s~d~----------~Vklw~~~ 404 (463)
T KOG0270|consen 356 YFDIRNPGKPVWTLKAHDD-----EISGLSVNIQTPGLLSTASTDK----------VVKLWKFD 404 (463)
T ss_pred eeecCCCCCceeEEEeccC-----CcceEEecCCCCcceeeccccc----------eEEEEeec
Confidence 99999 899999999988 7777766554 34677788887 99999985
No 144
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.0017 Score=65.91 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=105.5
Q ss_pred CeEEEeecCCC--eEEEEEeeCceEEEEec--cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 205 GKVLTYSAQDS--IYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 205 GkiLt~~~~ds--~ykVWdL~~Ys~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+++.-.....+ .+-+||..... ...++ .+.+...+.| ||..|++....+...-|.+|++.+|+...-.. .
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----~ 238 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----F 238 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec----C
Confidence 66554443333 44455554433 33333 3478899999 88888877666666669999999998654211 1
Q ss_pred CCcceeeeeecce--eEE-eecCceeeE--EEcccceEEEeeccccCCCceEEEEee-ceeEEEE-ecCeEEEEecC--C
Q 015220 280 NKKVDFIEQFNEK--LLV-KQENENLQI--LDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTF-RNRTVAVWNFR--G 350 (411)
Q Consensus 280 ~K~I~FLE~~~ek--llI-KQe~~~LkI--~dL~t~e~~~v~~T~f~hpsAfifLy~-sqlFlSf-sd~tI~iWn~~--G 350 (411)
.-.+.....++|+ +++ ...+.+..| +|+.+++..++.... +.-....|-.. +.++++- +++...||..+ |
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 1223456777775 333 344444455 566677766652211 11111122221 2444433 44677888764 4
Q ss_pred ceee--eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~--s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
...+ +++++. ..+..+||||+.|+..+.+. +...|.+||+.+|+..
T Consensus 318 g~~~~lt~~g~~-------~~~~~~SpDG~~Ia~~s~~~-------g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 318 GAAQRVTFTGSY-------NTSPRISPDGKLLAYISRVG-------GAFKLYVQDLATGQVT 365 (427)
T ss_pred CceEEEecCCCC-------cCceEECCCCCEEEEEEccC-------CcEEEEEEECCCCCeE
Confidence 3333 344422 22568999999998665442 1237999999998753
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.88 E-value=0.00019 Score=75.23 Aligned_cols=181 Identities=15% Similarity=0.232 Sum_probs=125.4
Q ss_pred EEeeCCCC-eEEEeecCCCeEEEEEee----CceEEEEeccC--ceeEEEEe---CCEE-EEEEecCCCceeeEEEEecC
Q 015220 198 VEFDDVNG-KVLTYSAQDSIYKVFDLK----NYTMLYSISDK--NVQEIKIS---PGIM-LLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 198 vEFDd~NG-kiLt~~~~ds~ykVWdL~----~Ys~iysLs~~--~VqeIkIS---dG~~-Lai~q~t~~~ipiKIl~I~t 266 (411)
++|-..-- +.++.+.--+.+=+||+. ++.-+|.-+.+ .|.-++.+ +.++ .+.++++ |.+-|+++
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt-----iR~~D~~~ 266 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT-----IRLQDFEG 266 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce-----eeeeeecc
Confidence 46666666 777777889999999994 45555555544 89999998 3333 3333333 55556665
Q ss_pred CcEE--eEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceE-EEeeccccCCCceEEEEeec----eeEEE
Q 015220 267 GTVL--KSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYEN----QLFLT 337 (411)
Q Consensus 267 G~~L--~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~-~~v~~T~f~hpsAfifLy~s----qlFlS 337 (411)
++-- .+.+ -..+=+.-+....|.. |+.+.=..+.+||++++.. ++ .+-.|..-+--++.+ +.|+|
T Consensus 267 ~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~---~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 267 NISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE---NLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred hhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccch---hhhhhhcccceeecCCCCchheee
Confidence 4321 1110 0111122233344443 5556545999999999766 44 445588888888888 78999
Q ss_pred E-ecCeEEEEecC---Cc--eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 338 F-RNRTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 338 f-sd~tI~iWn~~---Ge--l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
. -|+|.+|||+| |. ++-+.-.|.. .+|++|.||++-.|++-|.|. .|.|||-
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr-----sV~sAyFSPs~gtl~TT~~D~----------~IRv~ds 398 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRR-----SVNSAYFSPSGGTLLTTCQDN----------EIRVFDS 398 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceecccccc-----eeeeeEEcCCCCceEeeccCC----------ceEEeec
Confidence 8 78899999998 32 4567778998 999999999999999999999 9999985
No 146
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.87 E-value=8.2e-05 Score=75.26 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=94.8
Q ss_pred cccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEE-ecCeEEEEecC-
Q 015220 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTF-RNRTVAVWNFR- 349 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSf-sd~tI~iWn~~- 349 (411)
-.|..+|-.+++..-++-=-+.++.|+|||++++.-.- ++-.|.-.+.+|-.. .=+|++ .|+.|-+|+-.
T Consensus 40 ~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 40 SAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred cccccceeEEEecceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 45677888888877777666788999999999976665 555555555555433 247888 88999999998
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
=+++.+|-.|.. .+|-|.|-|.|++.+|-+.|. ++++|||.+|+-
T Consensus 117 W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~----------~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 117 WELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQ----------VLRTWNLVRGRV 161 (362)
T ss_pred eEEeeeeccccc-----ccceeEecCCCceEEEEcCCc----------eeeeehhhcCcc
Confidence 789999999999 899999999999999999998 999999999973
No 147
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.0024 Score=63.88 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=138.6
Q ss_pred CCCeEEEeecCCCeEEEEEeeC--ceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKN--YTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~--Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
|.|+.|++.+=|.+.-+|--.+ ++++-.|.++ ||+.|..| +|-+||+-.+-++ +=||-+.-+...--..-|-
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---VWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---VWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---EEEEEecCCCcEEEEeeec
Confidence 6899999888899999998875 6799999966 99999999 9999999999886 4567766555555555689
Q ss_pred ccCCcceeeeeec--ceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCc
Q 015220 278 HRNKKVDFIEQFN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGE 351 (411)
Q Consensus 278 ~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Ge 351 (411)
+|..+|--+.-|| +=|+=.+=++.||+|.--.++-++.-.|+.+|...+-.++.. +.+.+. .|+|++||-..
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-- 225 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-- 225 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec--
Confidence 9999999999999 444455578999999988666555556899998877777655 468888 78899999876
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+++++-..+ .+.+|.+- -++|.|+|.|. +|.++-..
T Consensus 226 --~~~~~~~sr----~~Y~v~W~--~~~IaS~ggD~----------~i~lf~~s 261 (312)
T KOG0645|consen 226 --TDLSGMHSR----ALYDVPWD--NGVIASGGGDD----------AIRLFKES 261 (312)
T ss_pred --cCcchhccc----ceEeeeec--ccceEeccCCC----------EEEEEEec
Confidence 555543321 33444444 67899999987 77766543
No 148
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.85 E-value=0.00045 Score=69.78 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=121.3
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc-eEE--EEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TML--YSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-s~i--ysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
=++|-...+-.+++++=|++.|+|++++- ..+ -..++ .-|.++.-| ||.-++++.+-+ -+|+|||++||+..
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk---~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK---QAKLWDLASGQVSQ 108 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC---ceEEEEccCCCeee
Confidence 36777766666778888999999999994 322 11222 389999999 898877777765 48999999999877
Q ss_pred EeeeccccCCcceeeeeeccee--EE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeE-EEE-ecCeEEE
Q 015220 272 SFNHLLHRNKKVDFIEQFNEKL--LV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF-LTF-RNRTVAV 345 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~ekl--lI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlF-lSf-sd~tI~i 345 (411)
-.. |..||..+.-.+... ++ -+=+..||-||.+...+.- | -..|+-+.+...-+-. +.. .++.|.+
T Consensus 109 v~~----Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~---t-~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 109 VAA----HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA---T-LQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred eee----cccceeEEEEecCCCcceeEecccccceeecccCCCCeee---e-eeccceeeehhccCceeEEEecCCcEEE
Confidence 533 445555444444333 44 4567999999999888774 3 3589999888766443 333 9999999
Q ss_pred EecCCce--eeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 346 WNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 346 Wn~~Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
+||++.+ ..+.+.-+.| -+..|++-.|+|.-.-||
T Consensus 181 ynL~n~~te~k~~~SpLk~----Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKW----QTRCVACFQDKDGFALGS 217 (347)
T ss_pred EEcCCCcchhhhhcCcccc----eeeEEEEEecCCceEeee
Confidence 9998543 3355555555 677778777777654444
No 149
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.85 E-value=0.0041 Score=61.01 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=101.8
Q ss_pred CCCCeEEEeecCC---CeEEEEEeeCceEEEEecc-CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 202 DVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 202 d~NGkiLt~~~~d---s~ykVWdL~~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
.+||+-|+|...+ ..+.+||+.+.+....... ..+..++.| ||..|++.....+...|.+|++.+|+...-
T Consensus 198 Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---- 273 (417)
T TIGR02800 198 SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---- 273 (417)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC----
Confidence 4678888876543 5899999998754332222 245668888 887666655555666788899999875442
Q ss_pred cccCCcceeeeeecc--eeEEeec---CceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEEecC---eEEEEe
Q 015220 277 LHRNKKVDFIEQFNE--KLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTFRNR---TVAVWN 347 (411)
Q Consensus 277 L~h~K~I~FLE~~~e--kllIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSfsd~---tI~iWn 347 (411)
..+.........+++ ++++.+. ...|-++|+.+++...+..... ......+- ..+.++++-.+. .|.+|+
T Consensus 274 ~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~-~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 274 TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG-YNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC-CccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 222222212233444 3444442 3367888998888766532211 11111111 122445555444 788888
Q ss_pred cCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 348 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 348 ~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+.+...+.+..+. .......+|||..|+..+.+.
T Consensus 353 ~~~~~~~~l~~~~------~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 353 LDGGGERVLTDTG------LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCeEEccCCC------CCCCceECCCCCEEEEEEeCC
Confidence 8844334333221 123457899999998888764
No 150
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.84 E-value=0.0035 Score=63.95 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=133.3
Q ss_pred CCCeEEeeCCCCeEEEeec---------CCCeEEEEEeeCceEEEEecc---------CceeEEEEe-CCEEEEEEecCC
Q 015220 194 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD---------KNVQEIKIS-PGIMLLIFTKAS 254 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~---------~ds~ykVWdL~~Ys~iysLs~---------~~VqeIkIS-dG~~Lai~q~t~ 254 (411)
.|..+ +-.-+..+.+.+. .+..+.|||.++.+.+.+|.- ..-..+.+| ||-.|++.+-+
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~- 125 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS- 125 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-
Confidence 46665 6655666667777 799999999999999988872 233488999 99988888754
Q ss_pred CceeeEEEEecCCcEEeEee----eccccCCcceeeeeecceeEEe--e-cCceeeEEEcccceEEE-eeccccCCCceE
Q 015220 255 GHVPLKILSIEDGTVLKSFN----HLLHRNKKVDFIEQFNEKLLVK--Q-ENENLQILDVRNFELTE-VSRTEFMTPSAF 326 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~----~LL~h~K~I~FLE~~~ekllIK--Q-e~~~LkI~dL~t~e~~~-v~~T~f~hpsAf 326 (411)
+---+.|.|+++++++.++. -++-...+-.|+....|+-+.+ . +.++.+ ..+-+.+. ....+|.+| +|
T Consensus 126 p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~---~~~~~vf~~~~~~v~~rP-~~ 201 (352)
T TIGR02658 126 PSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK---IKPTEVFHPEDEYLINHP-AY 201 (352)
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceE---EeeeeeecCCccccccCC-ce
Confidence 22346899999999999754 2233345556666666665444 1 111111 11111111 123566788 55
Q ss_pred EEEeeceeEEEEecCeEEEEecCCc------eeeeeccc---cccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 327 IFLYENQLFLTFRNRTVAVWNFRGE------LVTSFEDH---LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 327 ifLy~sqlFlSfsd~tI~iWn~~Ge------l~~s~e~H---~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.--....+|+|+. |+|.+=|+.|+ ..-.++.. .+|.|.=..- +++++|+..++-............+-+
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCC
Confidence 3334568899999 99999997654 22223222 3576654333 999999999988553221111122235
Q ss_pred eEEEeeecceeee
Q 015220 398 KLFVSLLMFVTCK 410 (411)
Q Consensus 398 tI~i~~i~tGk~~ 410 (411)
.|-+.|..|+|.+
T Consensus 280 ~V~ViD~~t~kvi 292 (352)
T TIGR02658 280 FLFVVDAKTGKRL 292 (352)
T ss_pred EEEEEECCCCeEE
Confidence 8999999999975
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0011 Score=66.96 Aligned_cols=175 Identities=12% Similarity=0.169 Sum_probs=128.3
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-|-|++.++.-|+++ =|++.+++|....++..++.++ -+.....-|-.=++++.-.+ -|+.+|+.||+...
T Consensus 18 ~v~f~~~~~~LLvss-WDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg---~vr~~Dln~~~~~~---- 89 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSS-WDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDG---QVRRYDLNTGNEDQ---- 89 (323)
T ss_pred eEEEcCcCCcEEEEe-ccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCc---eEEEEEecCCccee----
Confidence 478997777777766 8999999999998888777755 55555544422222222221 36899999998876
Q ss_pred ccccCCcceeeeee--cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC--
Q 015220 276 LLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR-- 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~-- 349 (411)
+.-|.++|+.||-. .++++=.+=+++||+||.++ ++....++.+..+.++..+ ..++.+ +++.+-+||++
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~----~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN----KVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccc----cccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 57789999999999 45556666789999999998 3333667788999888877 666665 99999999999
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.++...-|..+-| -+..|..=|.|+=-+++|-|-
T Consensus 166 ~~~~q~reS~lky----qtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 166 DEPFQRRESSLKY----QTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred cchhhhcccccee----EEEEEEEecCCCceEEEeecc
Confidence 7777555555554 577777777777666666553
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.81 E-value=0.00021 Score=78.48 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=139.5
Q ss_pred eEEEeecCCCeEEEEEee-CceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEE-ecCCcEEeEeeecccc
Q 015220 206 KVLTYSAQDSIYKVFDLK-NYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILS-IEDGTVLKSFNHLLHR 279 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~-~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~-I~tG~~L~t~~~LL~h 279 (411)
+.|++.+-|.-+-|+|.+ +|.++++|.++ -|-.||+- ++++=|++-++...++..+.- -.+|.+-....+-+++
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 566666669999999985 69999999987 89999987 889999999999998888765 2345444433333333
Q ss_pred CCcceeeeeecc--eeEEeecCceeeEEEcccceEEEe---eccccCCCceEEEEeeceeEEEE--ecCeEEEEecC-Cc
Q 015220 280 NKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEV---SRTEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFR-GE 351 (411)
Q Consensus 280 ~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v---~~T~f~hpsAfifLy~sqlFlSf--sd~tI~iWn~~-Ge 351 (411)
--++=||+-+. .+++.=-+.||+|+|+.+|+..+. +...-+++- =+-|.-+.+|+.- +|+|+.++||- ||
T Consensus 597 -tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI-Kv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 597 -TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI-KVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred -ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE-EEEECCCccEEEEeecCCceEEEEeccch
Confidence 23444665543 346666889999999999988872 222222221 2346667787766 89999999999 99
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
.++++.||.- -+.-+-.++|=+-|||.+-|. -|-||-+-
T Consensus 675 cvA~m~GHsE-----~VTG~kF~nDCkHlISvsgDg----------CIFvW~lp 713 (1080)
T KOG1408|consen 675 CVAQMTGHSE-----AVTGVKFLNDCKHLISVSGDG----------CIFVWKLP 713 (1080)
T ss_pred hhhhhcCcch-----heeeeeecccchhheeecCCc----------eEEEEECc
Confidence 9999999998 788899999999999999886 99999874
No 153
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.80 E-value=0.0043 Score=62.06 Aligned_cols=175 Identities=12% Similarity=0.111 Sum_probs=101.9
Q ss_pred eEEE--EEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 216 IYKV--FDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 216 ~ykV--WdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
.|++ +|+.+.....-.+ ++.+...+.| ||..|+.....+...-|-+|++.+|+...-. ...........+++
T Consensus 178 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~----~~~g~~~~~~~SpD 253 (430)
T PRK00178 178 RYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT----NFEGLNGAPAWSPD 253 (430)
T ss_pred ceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc----CCCCCcCCeEECCC
Confidence 4554 5776665433223 3478888999 8888877665556667889999999764421 11112234556666
Q ss_pred e--eEE-ee--cCceeeEEEcccceEEEeeccccCCCceEEEE-eeceeEEEE-ecC--eEEEEecC-Cceee-eecccc
Q 015220 292 K--LLV-KQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTF-RNR--TVAVWNFR-GELVT-SFEDHL 360 (411)
Q Consensus 292 k--llI-KQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL-y~sqlFlSf-sd~--tI~iWn~~-Gel~~-s~e~H~ 360 (411)
+ +++ .+ ++..|-+||+.+++..++..... ......|- ..++++++- +++ .|-+|++. |+..+ ++.++.
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 4 332 22 33468888999999887533211 11112221 122555443 333 46666776 55432 333322
Q ss_pred ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 361 ~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.....+||||+.|+-.+.+. +...|-++|+.||+.
T Consensus 333 -------~~~~~~Spdg~~i~~~~~~~-------~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 333 -------NARPRLSADGKTLVMVHRQD-------GNFHVAAQDLQRGSV 367 (430)
T ss_pred -------ccceEECCCCCEEEEEEccC-------CceEEEEEECCCCCE
Confidence 23567999999987655432 123688899998875
No 154
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.0036 Score=63.31 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|... +..+.+||+.+.+. ..|++ ..+...+.| ||-.|++........-|-+|++.+|++.. +
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----L 285 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----L 285 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----c
Confidence 68888888653 57899999988764 33442 256788899 88777766666666778888999997643 3
Q ss_pred cccCCcceeeeeecce--eEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEee----ceeEEEEe-c--CeEE
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----NQLFLTFR-N--RTVA 344 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~----sqlFlSfs-d--~tI~ 344 (411)
..+.........++|+ +...+. ...|-+||+.+++...+... +........ +.+.++-. . ..|.
T Consensus 286 t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 286 TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCCceEEE
Confidence 3333333334556654 444442 24688889988888776421 111111111 23333322 2 3688
Q ss_pred EEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 345 iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+|++.|.-.+.+..- + .+.....||||+.|+-.+.+.... +...+-+.|+.+|+
T Consensus 362 ~~d~~~~~~~~lt~~--~----~~~~p~~spDG~~i~~~~~~~~~~----~~~~L~~~dl~g~~ 415 (435)
T PRK05137 362 VMKPDGSGERILTSG--F----LVEGPTWAPNGRVIMFFRQTPGSG----GAPKLYTVDLTGRN 415 (435)
T ss_pred EEECCCCceEeccCC--C----CCCCCeECCCCCEEEEEEccCCCC----CcceEEEEECCCCc
Confidence 899886545544321 1 356778999999988655543110 11357777776554
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.78 E-value=0.00023 Score=71.80 Aligned_cols=193 Identities=18% Similarity=0.213 Sum_probs=115.2
Q ss_pred EEEEEeEecC-CCceeeeEeee-hh-hhhhCCCCCCCcc-----eeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEe
Q 015220 151 LITVSVYASD-NFSSLRCRSTR-IE-YIRRGKPDAGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (411)
Q Consensus 151 lI~vSv~~sd-~~s~L~cr~~~-~~-~i~~gk~~~~~~L-----F~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL 222 (411)
=|..++|.-. +-..|.|.++= ++ .++. ....+| ..++.+..-.-|||.+ |+.-|++-. |..+-+|+|
T Consensus 77 ~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~---S~~~tlE~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l 151 (370)
T KOG1007|consen 77 RILATVYNDTSDSGVLTGAAIWQIPEPLGQ---SNSSTLECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSL 151 (370)
T ss_pred ceEEEEEeccCCCcceeeEEEEecccccCc---cccchhhHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEc
Confidence 3566777622 22456777764 22 2211 111222 1223344456899987 999888766 888999999
Q ss_pred eCceEEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCc
Q 015220 223 KNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE 300 (411)
Q Consensus 223 ~~Ys~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~ 300 (411)
...+.+ |+++..| .++-.-+ ..|+ --|| +..+++..-.+.
T Consensus 152 ~ess~~-------vaev~ss~s~e~~~~f---------------tsg~-------WspH---------Hdgnqv~tt~d~ 193 (370)
T KOG1007|consen 152 DESSKI-------VAEVLSSESAEMRHSF---------------TSGA-------WSPH---------HDGNQVATTSDS 193 (370)
T ss_pred ccCcch-------heeeccccccccccee---------------cccc-------cCCC---------CccceEEEeCCC
Confidence 998764 3344433 2210000 0000 1111 234455566788
Q ss_pred eeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEE
Q 015220 301 NLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 301 ~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~ 372 (411)
+|+.||++| ++..+ -+..|-.-+.-|..| .+++|. -|+.|+|||.| -++|.++.+|.-|. =+-=|
T Consensus 194 tl~~~D~RT~~~~~s---I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv----W~VRf 266 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNS---IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV----WAVRF 266 (370)
T ss_pred cEEEEEccchhhhcc---hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE----EEEEe
Confidence 999999998 33333 233344555555555 456676 88999999999 77999999999872 22222
Q ss_pred EcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 373 ITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 373 Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
=..-.+||.||+.|. ++++|.
T Consensus 267 n~~hdqLiLs~~SDs----------~V~Lsc 287 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDS----------AVNLSC 287 (370)
T ss_pred cCccceEEEecCCCc----------eeEEEe
Confidence 344567888888887 677664
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.00086 Score=70.60 Aligned_cols=179 Identities=17% Similarity=0.233 Sum_probs=122.1
Q ss_pred eEEEeecCCCeEEEEEeeCce--EEEEeccC--ceeEEEEe-CCE-EEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 206 KVLTYSAQDSIYKVFDLKNYT--MLYSISDK--NVQEIKIS-PGI-MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys--~iysLs~~--~VqeIkIS-dG~-~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
-+|.-.+.|++.++|-+-.-+ .|++|-=+ -++...+. +|+ .++++.+ +=|+..|||+++++.+= ..+-|+
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r---rky~ysyDle~ak~~k~-~~~~g~ 301 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR---RKYLYSYDLETAKVTKL-KPPYGV 301 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc---ceEEEEeeccccccccc-cCCCCc
Confidence 456667889999998775533 66666533 67777777 777 5544433 34678999999998873 112222
Q ss_pred -CCcceeeeeecceeEEeecCc--eeeEEEcccceEEEeeccccCC---CceEEEEeec-eeEEEEecCeEEEEecC-Cc
Q 015220 280 -NKKVDFIEQFNEKLLVKQENE--NLQILDVRNFELTEVSRTEFMT---PSAFIFLYEN-QLFLTFRNRTVAVWNFR-GE 351 (411)
Q Consensus 280 -~K~I~FLE~~~ekllIKQe~~--~LkI~dL~t~e~~~v~~T~f~h---psAfifLy~s-qlFlSfsd~tI~iWn~~-Ge 351 (411)
+|-++--|++++.-+|+=.|+ -|-++-..|+|.+- -|-- =++|.|---+ .|+++..++.|-+||++ -.
T Consensus 302 e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~----s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 302 EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT----SFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh----eeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc
Confidence 233444555587776665554 46666667777663 2211 2334443222 77888899999999999 66
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.+.+|-|.-.- ...++.+|.+|+++.+||.. |-+||+|..+
T Consensus 378 ~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~----------GiVNIYd~~s 418 (514)
T KOG2055|consen 378 CLHRFVDDGSV----HGTSLCISLNGSYLATGSDS----------GIVNIYDGNS 418 (514)
T ss_pred eEEEEeecCcc----ceeeeeecCCCceEEeccCc----------ceEEEeccch
Confidence 77788877663 67899999999999999987 4999998543
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.77 E-value=0.00087 Score=68.42 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=113.9
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--e-EEeecCceeeEEEcccceEEEeeccc
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--L-LVKQENENLQILDVRNFELTEVSRTE 319 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--l-lIKQe~~~LkI~dL~t~e~~~v~~T~ 319 (411)
+|.-++..-+ ..-=|+|+|..+++..+. +.+|--.|+-|.-++.+ + |=.+++|.|++||+++..++.|=...
T Consensus 103 ~~~p~la~~G--~~GvIrVid~~~~~~~~~---~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 103 TGNPFLAAGG--YLGVIRVIDVVSGQCSKN---YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCeeEEeec--ceeEEEEEecchhhhccc---eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3444444444 445578999999999998 88999999999988888 3 67889999999999999999999999
Q ss_pred cCCCceEEEEeec---eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCcc-------ceEEE--cCC---------
Q 015220 320 FMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNT-------NNIYI--TSD--------- 376 (411)
Q Consensus 320 f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~-------n~i~I--s~D--------- 376 (411)
-+|...++.+..+ ..++|. .|-+|.+|.+. -+.-.-+|....|.|+-.+ .-+++ |.|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 9999999999998 446666 99999999999 7777778888888887666 33333 444
Q ss_pred ---CCEEEEEecCC
Q 015220 377 ---QDLIISYCKAD 387 (411)
Q Consensus 377 ---qd~iiS~~~d~ 387 (411)
||+|+|+|-+.
T Consensus 258 rw~gd~ilSkscen 271 (385)
T KOG1034|consen 258 RWFGDFILSKSCEN 271 (385)
T ss_pred HHHhhheeecccCc
Confidence 79999998876
No 158
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.76 E-value=0.00014 Score=74.85 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=123.1
Q ss_pred eEEEEEeeCceEEEEec--cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--
Q 015220 216 IYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-- 291 (411)
Q Consensus 216 ~ykVWdL~~Ys~iysLs--~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-- 291 (411)
.+-|||++--.++.+++ -+.+..++.+|.---++..+... =.|-|+|+-++++|+....-+.. .. |--.||
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD-rsIvLyD~R~~~Pl~KVi~~mRT-N~---IswnPeaf 242 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD-RSIVLYDLRQASPLKKVILTMRT-NT---ICWNPEAF 242 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC-CceEEEecccCCccceeeeeccc-cc---eecCcccc
Confidence 47899999999997777 56899999985543334444333 34779999999999986643332 22 333333
Q ss_pred eeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceee--eeccccccCC
Q 015220 292 KLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVT--SFEDHLLWHP 364 (411)
Q Consensus 292 kllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~--s~e~H~~~~~ 364 (411)
+-..+.|+++|-.+|++. .++.. -.++|-+|+.-++.| +=|+|+ =|+||||++.+.---| =-+..+-
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~---v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq--- 316 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLN---VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ--- 316 (433)
T ss_pred ceeeccccccceehhhhhhcccch---hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh---
Confidence 347889999999999998 44444 678899999999999 669999 7999999999933211 2333444
Q ss_pred CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 365 ~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
.+-.|.-|-|-++|||||.|- .|.+|-
T Consensus 317 --~V~~Vk~S~Dskyi~SGSdd~----------nvRlWk 343 (433)
T KOG0268|consen 317 --HVFCVKYSMDSKYIISGSDDG----------NVRLWK 343 (433)
T ss_pred --eeeEEEEeccccEEEecCCCc----------ceeeee
Confidence 455788999999999999986 899985
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.73 E-value=0.00068 Score=69.15 Aligned_cols=190 Identities=14% Similarity=0.204 Sum_probs=135.7
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-----CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCc-----
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT----- 268 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-----~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~----- 268 (411)
|...+-.-|++.+.|.++|.||.++..++-.+-+ ++|.+|-+| +|-.+|..---| .||+|+|.+-+
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKL 219 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhh
Confidence 4455666788899999999999999999977652 399999999 888877655444 48999998221
Q ss_pred --------------------EEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEc-ccceEEE-eec--------c
Q 015220 269 --------------------VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNFELTE-VSR--------T 318 (411)
Q Consensus 269 --------------------~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL-~t~e~~~-v~~--------T 318 (411)
+...|.--=.|+..||.+.-++|.+|=|+-.+-|-.|-- +=+|.+. |.+ .
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~ 299 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG 299 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeee
Confidence 111221223577999999999999999999999999977 2233311 111 1
Q ss_pred ccCCCc---eEEEEeec---eeEEEE-ecCeEEEEecC-Cce--eeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 319 EFMTPS---AFIFLYEN---QLFLTF-RNRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 319 ~f~hps---AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel--~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
.|.-|. ||+=.+.. ..++-+ +.++|-+|||+ -|+ .+|+.-|+. .-.+.....|.||-+|+.-|.|.
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~---~~tVRQ~sfS~dgs~lv~vcdd~- 375 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS---GSTVRQTSFSRDGSILVLVCDDG- 375 (385)
T ss_pred EeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc---cceeeeeeecccCcEEEEEeCCC-
Confidence 222333 45554444 445555 89999999999 444 557776665 33678889999999999999886
Q ss_pred CCccccCCceEEEeeec
Q 015220 389 DDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 389 ~~~~~~~~gtI~i~~i~ 405 (411)
+|==||-.
T Consensus 376 ---------~Vwrwdrv 383 (385)
T KOG1034|consen 376 ---------TVWRWDRV 383 (385)
T ss_pred ---------cEEEEEee
Confidence 87777743
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00069 Score=73.21 Aligned_cols=271 Identities=15% Similarity=0.179 Sum_probs=172.2
Q ss_pred ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcce
Q 015220 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF 187 (411)
++-=..-|..++|-..||+ |.=-..-|++|+||=+|...+.-|. +.+-..+ .|---.+==..|..|+..+ +|+
T Consensus 415 lasGsdDGtvriWEi~TgR--cvr~~~~d~~I~~vaw~P~~~~~vL--AvA~~~~-~~ivnp~~G~~~e~~~t~e--ll~ 487 (733)
T KOG0650|consen 415 LASGSDDGTVRIWEIATGR--CVRTVQFDSEIRSVAWNPLSDLCVL--AVAVGEC-VLIVNPIFGDRLEVGPTKE--LLA 487 (733)
T ss_pred eeecCCCCcEEEEEeecce--EEEEEeecceeEEEEecCCCCceeE--EEEecCc-eEEeCccccchhhhcchhh--hhh
Confidence 3333445788899999998 7777788999999999998876665 3333332 1211111012233322211 122
Q ss_pred eecccCCC--CeEEe-----eCCC-C-eEEEeecC---------CCeEEEEEee----CceEEEEeccCcee-EEEEeCC
Q 015220 188 ESESLKWP--GFVEF-----DDVN-G-KVLTYSAQ---------DSIYKVFDLK----NYTMLYSISDKNVQ-EIKISPG 244 (411)
Q Consensus 188 ~~~~l~~P--gfvEF-----Dd~N-G-kiLt~~~~---------ds~ykVWdL~----~Ys~iysLs~~~Vq-eIkISdG 244 (411)
+...-..| .-|-. |+.- | ++.+.+.. ++.|-.=-+- ..-.|++||....| -++-|.|
T Consensus 488 ~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG 567 (733)
T KOG0650|consen 488 SAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG 567 (733)
T ss_pred cCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCC
Confidence 22100000 00000 0000 1 12221111 2222222222 23367888866444 2444544
Q ss_pred EEE-EEEecCC------CceeeEEEEecCCcEEeEeeeccccCCcceeeeeec--ceeEEeecCceeeEEEccc-ceEEE
Q 015220 245 IML-LIFTKAS------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILDVRN-FELTE 314 (411)
Q Consensus 245 ~~L-ai~q~t~------~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~--ekllIKQe~~~LkI~dL~t-~e~~~ 314 (411)
+.. +.++++. .+.++.|+||..+++.++ |+.-.|-|.+|.+++ |++++-+-+.++--+||.- .++++
T Consensus 568 ~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKk---L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk 644 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKK---LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK 644 (733)
T ss_pred ceeEEEecCCCceEEEEeccceEEEehhHHHHHHH---HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH
Confidence 443 4455555 356899999999999999 889999999999999 9999999999999999965 57887
Q ss_pred eeccccCCCceEEEEeec---eeEEEEec-CeEEEEecC--Cc--------eeeeeccccccCCCCccceEEEcCCCCEE
Q 015220 315 VSRTEFMTPSAFIFLYEN---QLFLTFRN-RTVAVWNFR--GE--------LVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~s---qlFlSfsd-~tI~iWn~~--Ge--------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~i 380 (411)
|+--|+.|+-.|+.- .||.|++| +++-|+.=. -| +|..|.+|..-...|....+ --|.|-.+
T Consensus 645 ---~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~-wHP~qpWL 720 (733)
T KOG0650|consen 645 ---TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI-WHPRQPWL 720 (733)
T ss_pred ---HhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec-ccCCCceE
Confidence 888899999988866 78999966 888887533 33 46688999984444444333 57999999
Q ss_pred EEEecCCCCCccccCCceEEEe
Q 015220 381 ISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 381 iS~~~d~~~~~~~~~~gtI~i~ 402 (411)
+|..+|. ||.||
T Consensus 721 fsAGAd~----------tirlf 732 (733)
T KOG0650|consen 721 FSAGADG----------TIRLF 732 (733)
T ss_pred EecCCCc----------eEEee
Confidence 9999996 99988
No 161
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.0066 Score=61.62 Aligned_cols=174 Identities=14% Similarity=0.080 Sum_probs=99.1
Q ss_pred CCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|... ...+.+||+.+.+... |++ ..+.....| ||..|++........-|-++++.+|+. .. +
T Consensus 205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~---l 279 (427)
T PRK02889 205 PDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RR---L 279 (427)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EE---C
Confidence 68888887654 3468999999887533 332 255678899 888787765555555666677776663 33 2
Q ss_pred cccCCcceeeeeecce--eEEeec-CceeeEEEc--ccceEEEeeccccCCCceEEEEeeceeEEEEecC---eEEEEec
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQE-NENLQILDV--RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNR---TVAVWNF 348 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQe-~~~LkI~dL--~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~---tI~iWn~ 348 (411)
..+.........++|+ ++..+. +...+||.+ .+++...+....-........-..+.+.++-.++ .|.+||+
T Consensus 280 t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 280 TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 2332222334566665 444443 345677755 5566555421100000110011122333322222 6999999
Q ss_pred CCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 349 ~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.+.-.+.+..+. .......+|||+.|+..+.+.
T Consensus 360 ~~g~~~~lt~~~------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 360 ATGQVTALTDTT------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCeEEccCCC------CccCceECCCCCEEEEEEecC
Confidence 944344554432 235778999999999988765
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.69 E-value=0.00071 Score=71.08 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=129.6
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc--eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y--s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
=+.|-..|--.+.+.+-|+++|.=|+++- +.+|++.++ -+..+-++ +..++++.+.-. .+.+|++-++.-..
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEY 315 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccc
Confidence 35677777777777888999999999984 478888544 56777777 555666666655 88999999877643
Q ss_pred EeeeccccCCcceeeeeec---ceeEEeecCceeeEEEccc----ceEEEeeccccCCCceEEEEeec----eeEEEEec
Q 015220 272 SFNHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRN----FELTEVSRTEFMTPSAFIFLYEN----QLFLTFRN 340 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~~---ekllIKQe~~~LkI~dL~t----~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd 340 (411)
. ++.-|+|+|.-|.+.+ ..+.-++-++..+|||+++ .+++. ....|..++...|.| .|.-|..|
T Consensus 316 ~--~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l---st~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 316 E--NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL---STLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred h--hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce---ecccccceeeeeEEcCCCCceEeeccC
Confidence 3 3666778998888764 5667778899999999998 22222 344699999999998 65555599
Q ss_pred CeEEEEec----C-Cceeee------ecccc-----ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 341 RTVAVWNF----R-GELVTS------FEDHL-----LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 341 ~tI~iWn~----~-Gel~~s------~e~H~-----~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++|||||- . -+++++ ...|+ .|+|+| -+|++|--.+ .|.|+|-
T Consensus 391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-----------~li~vg~~~r----------~IDv~~~ 449 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-----------NLIVVGRYPR----------PIDVFDG 449 (498)
T ss_pred CceEEeecccccccCCccceeeccCcccccccchhheeCCCc-----------cEEEEeccCc----------ceeEEcC
Confidence 99999998 3 223332 11232 356654 4566666555 5777777
Q ss_pred ccee
Q 015220 405 MFVT 408 (411)
Q Consensus 405 ~tGk 408 (411)
..|+
T Consensus 450 ~~~q 453 (498)
T KOG4328|consen 450 NGGQ 453 (498)
T ss_pred CCCE
Confidence 7766
No 163
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.68 E-value=0.0045 Score=62.74 Aligned_cols=184 Identities=13% Similarity=0.091 Sum_probs=116.4
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEecc-CceeE-EEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQE-IKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~-~~Vqe-IkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
-.++....++.+.|.|..+.+.+-.|.. .++.. ++.| ||-.+.+.... -.+.++|+.++++++++.- -..
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd---g~vsviD~~~~~~v~~i~~----G~~ 79 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD---GTVSVIDLATGKVVATIKV----GGN 79 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT---SEEEEEETTSSSEEEEEE-----SSE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC---CeEEEEECCcccEEEEEec----CCC
Confidence 3456788899999999999999999974 46644 5667 79888887653 3799999999999999542 334
Q ss_pred ceeeeeeccee--EEe-ecCceeeEEEcccceEEEeeccccC-------CCceEEEEeeceeEE-EEec-CeEEEEecC-
Q 015220 283 VDFIEQFNEKL--LVK-QENENLQILDVRNFELTEVSRTEFM-------TPSAFIFLYENQLFL-TFRN-RTVAVWNFR- 349 (411)
Q Consensus 283 I~FLE~~~ekl--lIK-Qe~~~LkI~dL~t~e~~~v~~T~f~-------hpsAfifLy~sqlFl-Sfsd-~tI~iWn~~- 349 (411)
..-+++++|+- ++. ...+.+.|+|..+.|..+.=+|.-. ...|+++...+..|+ +..+ +.|-+=|..
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 55688888754 333 3789999999999998883333221 123555555555454 5544 555444555
Q ss_pred C-ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. .+..+..+.-. .-.-..++|||..++.+.... ..|-++|.+++|+.
T Consensus 160 ~~~~~~~~i~~g~-----~~~D~~~dpdgry~~va~~~s---------n~i~viD~~~~k~v 207 (369)
T PF02239_consen 160 PKNLKVTTIKVGR-----FPHDGGFDPDGRYFLVAANGS---------NKIAVIDTKTGKLV 207 (369)
T ss_dssp SSCEEEEEEE--T-----TEEEEEE-TTSSEEEEEEGGG---------TEEEEEETTTTEEE
T ss_pred ccccceeeecccc-----cccccccCcccceeeeccccc---------ceeEEEeeccceEE
Confidence 3 34444433222 345689999999877765443 18888888888864
No 164
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.0014 Score=73.25 Aligned_cols=181 Identities=10% Similarity=0.090 Sum_probs=132.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCce-EEEE--eccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCc---EEeEeee
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYT-MLYS--ISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT---VLKSFNH 275 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys-~iys--Ls~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~---~L~t~~~ 275 (411)
|++|+-|+.++.|+.+|+|+-.+-+ .=-+ ++.+-|..++.--+.|++-.... -++++.+..|+ +|..|.
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~----tv~~y~fps~~~~~iL~Rft- 96 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQN----TVLRYKFPSGEEDTILARFT- 96 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccc----eEEEeeCCCCCccceeeeee-
Confidence 4567788889999999999876652 1111 24556666666655655443322 35666666554 556655
Q ss_pred ccccCCcceeeeeecc--eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC
Q 015220 276 LLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 276 LL~h~K~I~FLE~~~e--kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
-|+..+...++ ++...+++--+|+.|+-.+.... ++-+|..-+..|... +++++- .||+|.||+++
T Consensus 97 -----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 97 -----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred -----ccceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 47788999888 66777889999999999998888 566688888888766 555555 89999999999
Q ss_pred -CceeeeeccccccCCCCcc-------ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 350 -GELVTSFEDHLLWHPDCNT-------NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~-------n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|.+.-++.+=.. |+. +.++-+|||-.+.-+|.|+ +|+|++..+++.
T Consensus 169 ~~~~~~tl~~v~k----~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----------~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 169 DGILSKTLTGVDK----DNEFILSRICTRLAWHPKGGTLAVPPVDN----------TVKVYSRKGWEL 222 (933)
T ss_pred cchhhhhcccCCc----cccccccceeeeeeecCCCCeEEeeccCC----------eEEEEccCCcee
Confidence 998888887655 333 3477899987788888888 999999888764
No 165
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.67 E-value=0.00012 Score=74.60 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=106.4
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEE------ccc---------------------
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILD------VRN--------------------- 309 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~d------L~t--------------------- 309 (411)
..||+||+|++|.+ .-||.--|+.|..++..+|+ +++++.--||- +-+
T Consensus 172 A~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~ 248 (481)
T KOG0300|consen 172 ARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR 248 (481)
T ss_pred eeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence 57999999999999 77999999999999999854 67888888885 111
Q ss_pred ---------ceEEEeecccc-CCCceEEE---EeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEc
Q 015220 310 ---------FELTEVSRTEF-MTPSAFIF---LYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (411)
Q Consensus 310 ---------~e~~~v~~T~f-~hpsAfif---Ly~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is 374 (411)
|-.++||-+.+ +|..-+++ |+..+--+|. .|+|--+||.. ||+|-.|.||.. +.+..---
T Consensus 249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-----ELtHcstH 323 (481)
T KOG0300|consen 249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-----ELTHCSTH 323 (481)
T ss_pred ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-----hccccccC
Confidence 22566665544 56666665 5555667777 88999999999 999999999998 88888889
Q ss_pred CCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 375 SDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 375 ~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|.|.|.+..|+|. |..+||..
T Consensus 324 ptQrLVvTsSrDt----------TFRLWDFR 344 (481)
T KOG0300|consen 324 PTQRLVVTSSRDT----------TFRLWDFR 344 (481)
T ss_pred CcceEEEEeccCc----------eeEeccch
Confidence 9999999999999 99999975
No 166
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.65 E-value=0.0024 Score=58.83 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=89.3
Q ss_pred eEEEEEeeC-ce--EEEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec
Q 015220 216 IYKVFDLKN-YT--MLYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (411)
Q Consensus 216 ~ykVWdL~~-Ys--~iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ 290 (411)
...+|.++. .. ...++..+ .|.++.-| +|..+|+.....+. -+.||+++ ++.+.++ + +.+++.|.-+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~-~v~lyd~~-~~~i~~~----~-~~~~n~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPA-KVTLYDVK-GKKIFSF----G-TQPRNTISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCc-ccEEEcCc-ccEeEee----c-CCCceEEEECC
Confidence 345666622 22 33444444 59999999 67777666554444 89999997 8888773 3 46778888888
Q ss_pred ceeEEeec-----CceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-------ecCeEEEEecCCceeee
Q 015220 291 EKLLVKQE-----NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-------RNRTVAVWNFRGELVTS 355 (411)
Q Consensus 291 ekllIKQe-----~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-------sd~tI~iWn~~Gel~~s 355 (411)
.+.++.-. ...|.+||+.+.+.+. .+.|+.+ ..++-+ +.|+|- .|+.++||+++|.++..
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~~~~-t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEHSDA-TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEEee----ccccCcE-EEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEe
Confidence 77655442 2359999999988885 3446554 344443 666665 27999999999999876
Q ss_pred ecc
Q 015220 356 FED 358 (411)
Q Consensus 356 ~e~ 358 (411)
..-
T Consensus 186 ~~~ 188 (194)
T PF08662_consen 186 KPF 188 (194)
T ss_pred cch
Confidence 543
No 167
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.60 E-value=0.00077 Score=68.30 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=118.5
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCc-eEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Y-s~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-||....+..||+..+.|+++|+||.+-- .++. ++|.++++..-...-
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~-------------------------------~lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFR-------------------------------VLDQHNTKRPPILKT 241 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeE-------------------------------EeecccCccCccccc
Confidence 38999999999999999999999998753 2333 333333332222111
Q ss_pred ccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEee-----ccccCCCceEEEEeeceeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVS-----RTEFMTPSAFIFLYENQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~-----~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn 347 (411)
.-.|..+++-++-..+.. ..+--+.++++||..+|+-.+++ +...-||.--+--.-+..|+-| -++++.+.+
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEE
Confidence 345667777777776665 55567899999999998877632 2222222222222233567767 678999999
Q ss_pred cC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCC-ceEEEeeecc
Q 015220 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN-GKLFVSLLMF 406 (411)
Q Consensus 348 ~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~-gtI~i~~i~t 406 (411)
+- |+.+|.+..|+- ++|-.+-.||=+..++|.-|-..+.|...- -..++.|.+|
T Consensus 322 ~~sgs~ir~l~~h~k-----~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~~pt~~~d~~t 377 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLK-----RINCAAYRPDFEQCFTGDMNGNIYMWSPALKSPTKISDLET 377 (397)
T ss_pred ccCceEEEeeecccc-----eeeEEeecCchhhhhccccCCccccccccccCCcccccccc
Confidence 98 999999999966 777778899999999998887655555422 3344445444
No 168
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.59 E-value=0.039 Score=55.00 Aligned_cols=228 Identities=14% Similarity=0.158 Sum_probs=127.4
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceE----------EEEEeecCCCeEEEEEeEecCCCceeeeEeee
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI----------RSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evI----------rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~ 171 (411)
+.+.+.|++...+|.-.|||..||+.+-..+...+.-+ -++.+ .++.+++.+ .-..|.|--.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~-----~~g~l~ald~- 137 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS-----EKGQVYALNA- 137 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc-----CCCEEEEEEC-
Confidence 34688999999999999999999999887766542111 01111 123333321 1123444322
Q ss_pred hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--c-----eeEEEEeCC
Q 015220 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--N-----VQEIKISPG 244 (411)
Q Consensus 172 ~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~-----VqeIkISdG 244 (411)
.-|++-=..++ .......|-.. +|++++ ...++.+--+|.+|.+.+.+.... . ...-.+.+|
T Consensus 138 ----~tG~~~W~~~~-~~~~~ssP~v~-----~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~ 206 (394)
T PRK11138 138 ----EDGEVAWQTKV-AGEALSRPVVS-----DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFG 206 (394)
T ss_pred ----CCCCCcccccC-CCceecCCEEE-----CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECC
Confidence 22333111111 11122334221 355554 445677888888888888666533 1 122233345
Q ss_pred EEEEEEecCCCceeeEEEEecCCcEEeEeeecccc-------CCcc-eeeeeecceeEEeecCceeeEEEcccceEEEee
Q 015220 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-------NKKV-DFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (411)
Q Consensus 245 ~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h-------~K~I-~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~ 316 (411)
.+++ ... +. .+.-++++||+.++++..--+. -..+ -.-.+.++.+++...+..|..+|+.+|+..=
T Consensus 207 ~v~~-~~~-~g--~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W-- 280 (394)
T PRK11138 207 GAIV-GGD-NG--RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW-- 280 (394)
T ss_pred EEEE-EcC-CC--EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE--
Confidence 4333 221 22 3556889999999875421110 0000 1122457888888888999999999986542
Q ss_pred ccccCCCceEEEEeeceeEEEEecCeEEEEecC-Cceeee
Q 015220 317 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 317 ~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s 355 (411)
...+..+.. ..++...+|+.-.++.+...|.. |+.+=+
T Consensus 281 ~~~~~~~~~-~~~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 281 KREYGSVND-FAVDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred eecCCCccC-cEEECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 123333322 23455688888889999999998 876543
No 169
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.0013 Score=67.32 Aligned_cols=173 Identities=19% Similarity=0.153 Sum_probs=127.0
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec---CCc--EEeEe
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---DGT--VLKSF 273 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---tG~--~L~t~ 273 (411)
.-|++.+.+++.|.++-+|||+ .+.|.+|.-+ .-...++| +|-|+|..-=|.. +|||-+- +|+ ..+..
T Consensus 196 A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD---VkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD---VKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred cCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC---ceEEEEEeccCcchhhhhhh
Confidence 3578999999999999999999 8899999866 45578899 9999999877654 7888874 443 23333
Q ss_pred eeccccCCcceeeeeeccee--EEeecCceeeEEEcccc-eEEEeeccccCCCceEEE--------Eeec---eeEEEEe
Q 015220 274 NHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIF--------LYEN---QLFLTFR 339 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~-e~~~v~~T~f~hpsAfif--------Ly~s---qlFlSfs 339 (411)
-.|-||+.-|-..+-+|+-- .-.+.+.+++|||..=. +.-+=|.++..-| ++.+ |.-+ ++|..-.
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcEEEeec
Confidence 34889999999999998754 66789999999997431 0001122332222 3333 2222 5565556
Q ss_pred cCeEEEEecC-Cceeeeecc-ccccCCCCccceEEEcCCCCEEEEEe
Q 015220 340 NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~s~e~-H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
-.++.+++-+ |+-+-+||+ |.. -+.+|.-++||..|+++.
T Consensus 351 gs~l~~~~se~g~~~~~~e~~h~~-----~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 351 GSDLKVFASEDGKDYPELEDIHST-----TISSISYSSDGKYIATCG 392 (420)
T ss_pred CCceEEEEcccCccchhHHHhhcC-----ceeeEEecCCCcEEeeec
Confidence 6789999998 999999987 444 688899999999999854
No 170
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.55 E-value=0.014 Score=60.07 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=111.0
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC---CCeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~---ds~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
+.+..|.| .+||+-|++... ...+.+||+.+.+.. .|+. ......+.| ||..|++........-|.+++
T Consensus 218 ~~~~~p~w----SPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 218 EPLMSPAW----SPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CcccCceE----CCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 34555666 578888887643 346788898886642 2332 234578889 888888776666777888999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeecce--eEEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf 338 (411)
+.+|+...- ..+.........++|+ +++.+ +...|-++|+.+++..++........+....-..+.++++-
T Consensus 293 l~tg~~~~l----t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 293 IATKALTRI----TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred CCCCCeEEC----ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 999986442 2222233444556664 44444 23456667888888777631111011111111122555544
Q ss_pred -ecCeEEE--EecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAV--WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~i--Wn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.++...| +|+.+.-++.+..... ......+|||+.|+-.+.+. +.+.|.++|. +|+
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~lt~~~~------d~~ps~spdG~~I~~~~~~~-------g~~~l~~~~~-~G~ 427 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQVLTSTRL------DESPSVAPNGTMVIYSTTYQ-------GKQVLAAVSI-DGR 427 (448)
T ss_pred ecCCceEEEEEECCCCCeEEccCCCC------CCCceECCCCCEEEEEEecC-------CceEEEEEEC-CCC
Confidence 3444444 6776333344443311 22346899999887655542 3345777775 454
No 171
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.54 E-value=0.067 Score=52.50 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=130.6
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC-
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP- 180 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~- 180 (411)
+...+.|++-...|.-.|||..||+.+=.... ++++.-+..+. ++.+++.+ .+ ..|.|-.. +.|+.
T Consensus 102 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~~p~v~--~~~v~v~~---~~--g~l~a~d~-----~tG~~~ 168 (377)
T TIGR03300 102 GADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSEVLSPPLVA--NGLVVVRT---ND--GRLTALDA-----ATGERL 168 (377)
T ss_pred EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc-CceeecCCEEE--CCEEEEEC---CC--CeEEEEEc-----CCCcee
Confidence 34578888888899999999999997644433 23333322221 34444422 11 23444322 22222
Q ss_pred ---CCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC------c-------eeEEEEeCC
Q 015220 181 ---DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------N-------VQEIKISPG 244 (411)
Q Consensus 181 ---~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~------~-------VqeIkISdG 244 (411)
....+-+.-.....|... +|. +.....++.+..+|+++.+.+.+..-. + .....+.++
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~-----~~~-v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~ 242 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA-----DGG-VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG 242 (377)
T ss_pred eEEccCCCceeecCCCCCEEE-----CCE-EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC
Confidence 001111111112334332 133 344455677778888888877543210 1 122334466
Q ss_pred EEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEE-EeeccccCCC
Q 015220 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT-EVSRTEFMTP 323 (411)
Q Consensus 245 ~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~-~v~~T~f~hp 323 (411)
.+++.... -.+..|+++||+++++... +. .-...+.++.+++..++..|.++|..+|+.. +.. .....
T Consensus 243 ~vy~~~~~----g~l~a~d~~tG~~~W~~~~--~~---~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~--~~~~~ 311 (377)
T TIGR03300 243 QVYAVSYQ----GRVAALDLRSGRVLWKRDA--SS---YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKND--ELKYR 311 (377)
T ss_pred EEEEEEcC----CEEEEEECCCCcEEEeecc--CC---ccCceEeCCEEEEECCCCeEEEEECCCCcEEEccc--cccCC
Confidence 65544321 2588899999999998652 11 1223467888999999999999999999764 211 11111
Q ss_pred -ceEEEEeeceeEEEEecCeEEEEecC-Cceeeeecccc
Q 015220 324 -SAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL 360 (411)
Q Consensus 324 -sAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~ 360 (411)
.+-..++...+|+.-.++.+.+||.+ |+++.++.-|-
T Consensus 312 ~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 312 QLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 11112355566666699999999998 99998876443
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.00071 Score=71.20 Aligned_cols=171 Identities=13% Similarity=0.216 Sum_probs=125.1
Q ss_pred CCe-EEEeecCCCeEEEEEeeCce-----EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 204 NGK-VLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 204 NGk-iLt~~~~ds~ykVWdL~~Ys-----~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
||. ++..++...-|-+|||.+-+ ++|-....-+.-+++| +|.|||+-- +--+|.|++-.|++.+++|++
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G---~~G~I~lLhakT~eli~s~Ki- 343 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG---NNGHIHLLHAKTKELITSFKI- 343 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc---cCceEEeehhhhhhhhheeee-
Confidence 888 77888889999999999866 4466665578889999 999888743 446788999999999999884
Q ss_pred cccCCcceeeeeecceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEE--Eeec---eeEEEE-ecCeEEEEecC
Q 015220 277 LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF--LYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 277 L~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif--Ly~s---qlFlSf-sd~tI~iWn~~ 349 (411)
=|.-+.+-|- +.++.++.+ +...+-+|||+...+.. .|..--+++- +..+ .+|+++ ..|-|-|||.+
T Consensus 344 eG~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~----rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 344 EGVVSDFTFS--SDSKELLASGGTGEVYVWNLRQNSCLH----RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ccEEeeEEEe--cCCcEEEEEcCCceEEEEecCCcceEE----EEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 4666666666 555666665 66799999999986654 2322222221 2222 578899 66799999965
Q ss_pred C-------ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCC
Q 015220 350 G-------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (411)
Q Consensus 350 G-------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~ 389 (411)
- .|++++..=- +.++++..++|.+++.-+|..+++
T Consensus 418 s~~~s~~PkPik~~dNLt-----t~Itsl~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLT-----TAITSLQFNHDAQILAIASRVKKN 459 (514)
T ss_pred hhhccCCCCchhhhhhhh-----eeeeeeeeCcchhhhhhhhhcccc
Confidence 2 2666664433 488999999999999888877654
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00091 Score=68.34 Aligned_cols=133 Identities=19% Similarity=0.259 Sum_probs=102.2
Q ss_pred eeEEEEecCCcEEeEeeeccccCCcceeeee-ecceeEEeecCceeeEEEcccceEEE-eeccccCCCceEEEEeec---
Q 015220 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYEN--- 332 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~LL~h~K~I~FLE~-~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsAfifLy~s--- 332 (411)
.++|++..||+.|..|+-.=++-..|.|+-- .+..++..+-+..+++||+++....- +.-|.. .|.+|++++.+
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~-~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ-SGTPFICLDLNCKK 129 (376)
T ss_pred eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC-CCCcceEeeccCcC
Confidence 3799999999999999988888888888876 77888889999999999999955443 333442 35899999986
Q ss_pred eeEEE-----EecCeEEEEecC--Cceeeee-ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 QLFLT-----FRNRTVAVWNFR--GELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 qlFlS-----fsd~tI~iWn~~--Gel~~s~-e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+++.. -++-.+-+||.| -.+++.+ |-|.-. .|--=|--.|-++++|||.|- -|+++|+
T Consensus 130 ~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD----VT~lrFHP~~pnlLlSGSvDG----------LvnlfD~ 195 (376)
T KOG1188|consen 130 NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD----VTQLRFHPSDPNLLLSGSVDG----------LVNLFDT 195 (376)
T ss_pred CeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----ceeEEecCCCCCeEEeecccc----------eEEeeec
Confidence 55544 477899999999 3367755 455552 222226667889999999995 8999987
Q ss_pred c
Q 015220 405 M 405 (411)
Q Consensus 405 ~ 405 (411)
+
T Consensus 196 ~ 196 (376)
T KOG1188|consen 196 K 196 (376)
T ss_pred C
Confidence 5
No 174
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.013 Score=60.20 Aligned_cols=175 Identities=14% Similarity=0.092 Sum_probs=98.4
Q ss_pred eEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce-
Q 015220 216 IYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK- 292 (411)
Q Consensus 216 ~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek- 292 (411)
.+.++|......-+-.. .+.+...+.| ||..|+.....+...-|.++++.+|+...-.. .-+. ......++|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g~---~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPGI---NGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCCC---cCCeeECCCCC
Confidence 34444765554322222 3477888999 89888877666677789999999998643211 1111 2234566665
Q ss_pred -eEE-eecCc--eeeEEEcccceEEEeeccccCCCceEEEEe-eceeEEEE-ecCeEEE--EecC-Cceee-eecccccc
Q 015220 293 -LLV-KQENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTF-RNRTVAV--WNFR-GELVT-SFEDHLLW 362 (411)
Q Consensus 293 -llI-KQe~~--~LkI~dL~t~e~~~v~~T~f~hpsAfifLy-~sqlFlSf-sd~tI~i--Wn~~-Gel~~-s~e~H~~~ 362 (411)
+++ ..++. .|-+||+.+++...+..... ......|-. .+.++++- +++...+ +|+. |+..+ +++++..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~- 352 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN- 352 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC-
Confidence 333 33333 58888999999887643211 111111211 22444443 4444444 5666 55433 3444332
Q ss_pred CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 363 ~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
....+||||+.|+-...+. +...|-++|+.+|+.
T Consensus 353 ------~~~~~SpDG~~l~~~~~~~-------g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 353 ------LGGSITPDGRSMIMVNRTN-------GKFNIARQDLETGAM 386 (448)
T ss_pred ------cCeeECCCCCEEEEEEecC-------CceEEEEEECCCCCe
Confidence 2357899999987654432 223566678888864
No 175
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.46 E-value=0.0047 Score=61.79 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=122.6
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
.-+|.-|++++-|++.+||++..-.++.++... -|-+.--. +..|...+ .- =.+.+|++-.|++...+.
T Consensus 29 n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-~d---k~ir~wd~r~~k~~~~i~ 104 (313)
T KOG1407|consen 29 NCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-GD---KTIRIWDIRSGKCTARIE 104 (313)
T ss_pred cccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-CC---ceEEEEEeccCcEEEEee
Confidence 368999999999999999999988777665521 33333332 22222211 11 247899999999999855
Q ss_pred eccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEe---ecee-EEEEecCeEEEEec
Q 015220 275 HLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQL-FLTFRNRTVAVWNF 348 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy---~sql-FlSfsd~tI~iWn~ 348 (411)
. +.+=-++--++++- .+-..+.-|...|.++.++.. ++-+ +..+.=+. -+.+ |||=..|+|.|-..
T Consensus 105 ~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~---~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 105 T----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN---EEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred c----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceee---hhcc-cceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 2 23334455555554 334467789999999988876 3321 11111111 1244 55558899999998
Q ss_pred C-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 349 ~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
- -++|.++.-|-. +-=-|.++|||+.+..|++|. .+-+||+.
T Consensus 177 psLkpv~si~AH~s-----nCicI~f~p~GryfA~GsADA----------lvSLWD~~ 219 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPS-----NCICIEFDPDGRYFATGSADA----------LVSLWDVD 219 (313)
T ss_pred cccccccccccCCc-----ceEEEEECCCCceEeeccccc----------eeeccChh
Confidence 8 889999999986 445789999999999999999 88899975
No 176
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.46 E-value=0.027 Score=56.48 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCCeEEEeecCC---CeEEEEEeeCceEEEEecc--CceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGKVLTYSAQD---SIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGkiLt~~~~d---s~ykVWdL~~Ys~iysLs~--~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+.|+|...+ ..+-+||+.+.+.- .|+. ..+.....| ||..|++........-|.++++.+|+... +
T Consensus 208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----l 282 (430)
T PRK00178 208 PDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----V 282 (430)
T ss_pred CCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----c
Confidence 678888776533 46788899887642 3332 245578899 88888876655666778899999998643 2
Q ss_pred cccCCcceeeeeecc--eeEEeec---CceeeEEEcccceEEEeeccccCCCceEEEEe--eceeEEEE-ecC--eEEEE
Q 015220 277 LHRNKKVDFIEQFNE--KLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTF-RNR--TVAVW 346 (411)
Q Consensus 277 L~h~K~I~FLE~~~e--kllIKQe---~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy--~sqlFlSf-sd~--tI~iW 346 (411)
..+........-+++ .+++.++ ...|-++|+.+++..++. .-+...+...+. .+.+.++- .++ .|.+|
T Consensus 283 t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 283 TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT--FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 222222222344544 4455443 346777789899877653 111111111111 12343333 222 58888
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
|+.+.-.+.+.. .. ......+||||+.|+-.+.+. +.+.|-+.++.
T Consensus 361 dl~tg~~~~lt~-~~-----~~~~p~~spdg~~i~~~~~~~-------g~~~l~~~~~~ 406 (430)
T PRK00178 361 DLQRGSVRILTD-TS-----LDESPSVAPNGTMLIYATRQQ-------GRGVLMLVSIN 406 (430)
T ss_pred ECCCCCEEEccC-CC-----CCCCceECCCCCEEEEEEecC-------CceEEEEEECC
Confidence 998433344432 11 122457999999998777653 23455565553
No 177
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.42 E-value=0.0006 Score=72.74 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=133.7
Q ss_pred CCCeEEEeecCCCeEEEEEeeCceEE--EEecc--CceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYTML--YSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~--~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+||+.|+-++.-+++-||||..=++= -+|+. -.-....+|+.-=|+++-++.. .|.||||++-++.+. +-|
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdG--nI~vwDLhnq~~Vrq---fqG 549 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG--NIAVWDLHNQTLVRQ---FQG 549 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCC--cEEEEEcccceeeec---ccC
Confidence 68999999999999999999987643 33332 3777888886666777777765 578999999999999 789
Q ss_pred cCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCce
Q 015220 279 RNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGEL 352 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel 352 (411)
|.--.-.|.+++++-=|=. =++.++.|||+.+.-.. -..|.+.-|. |.+. .-++.+ .|+-++|-...|--
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlq---qhdF~SQIfS-Lg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ---QHDFSSQIFS-LGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh---hhhhhhhhee-cccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999977765544 46899999999875543 3333333332 3333 345555 77888887777765
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.--+..|.. .+=++-.++=|+..+|-.||+--.-|.-.-|
T Consensus 626 kyqlhlheS-----cVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 626 KYQLHLHES-----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ceeeccccc-----EEEEEEecccCceeeecCchhhhhhccCccc
Confidence 555666665 5668889999999999999985555544433
No 178
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.41 E-value=0.03 Score=57.15 Aligned_cols=225 Identities=12% Similarity=0.119 Sum_probs=142.0
Q ss_pred eEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-
Q 015220 156 VYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK- 234 (411)
Q Consensus 156 v~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~- 234 (411)
|...+.|--.+|.. +....+.+...+. ++-.++|-.--|.-+=...++- -=+.+-.-|||=--+.++-+++=.
T Consensus 22 va~~~Gfriyn~~P--~ke~~~r~~~~~G-~~~veMLfR~N~laLVGGg~~p---ky~pNkviIWDD~k~~~i~el~f~~ 95 (346)
T KOG2111|consen 22 VATDTGFRIYNCDP--FKESASRQFIDGG-FKIVEMLFRSNYLALVGGGSRP---KYPPNKVIIWDDLKERCIIELSFNS 95 (346)
T ss_pred EEecCceEEEecCc--hhhhhhhccccCc-hhhhhHhhhhceEEEecCCCCC---CCCCceEEEEecccCcEEEEEEecc
Confidence 45556665566655 2222122223333 5555665554444332222220 012567889995556788888844
Q ss_pred ceeEEEEeCCEEEEEEecCCCceeeEEEEec-CCcEEeEeeeccccCCcceeeeeecceeEEeecC---ceeeEEEcccc
Q 015220 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNF 310 (411)
Q Consensus 235 ~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~---~~LkI~dL~t~ 310 (411)
+|..|+++...++++.. .-|.||.-. +=+.++.+.-.--+ |-+=.+-.+.++.+|+=-| ..+||.||...
T Consensus 96 ~I~~V~l~r~riVvvl~-----~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 96 EIKAVKLRRDRIVVVLE-----NKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ceeeEEEcCCeEEEEec-----CeEEEEEcCCChhheeeeecccCC-CceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 99999999555444433 236777777 56666654422111 3344555666777777644 46999999987
Q ss_pred eEEEeeccccCCCceEEEEeec---eeEEEE-ecC-eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 311 ELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 311 e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~-tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
+.- -|...-.|-+..-+++.+ .+.+|. ..| .|||||.+ |+++.-|-. + .+--++-.++.|||..+|...|
T Consensus 170 ~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--G-~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 170 KPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--G-VDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred CcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--C-CchheEEEEEeCCCccEEEEEc
Confidence 762 111344588888888888 678888 344 69999999 999987643 3 2234688899999999998766
Q ss_pred cCCCCCccccCCceEEEeeecc
Q 015220 385 KADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 385 ~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.- ||++|+.|+-
T Consensus 246 dK----------gTlHiF~l~~ 257 (346)
T KOG2111|consen 246 DK----------GTLHIFSLRD 257 (346)
T ss_pred CC----------CeEEEEEeec
Confidence 54 5999999864
No 179
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0022 Score=63.64 Aligned_cols=157 Identities=18% Similarity=0.272 Sum_probs=109.5
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCc---eEEEEeccC--ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDK--NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Y---s~iysLs~~--~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
|.-|+-|+-++.|+++|||..++- ++|-+|+++ -|=.+.-- =|-+||...-... +-||.=++|+=.+..
T Consensus 20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk---VIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK---VIIWKEENGRWTKAY 96 (299)
T ss_pred hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce---EEEEecCCCchhhhh
Confidence 456888999999999999999984 578999988 34444433 3555555433332 458999999655543
Q ss_pred eeccccCCcceeeee--eccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEEEee-----------------c
Q 015220 274 NHLLHRNKKVDFIEQ--FNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-----------------N 332 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~--~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~-----------------s 332 (411)
.+ -.|+.-|+.+.- +.-++ .-++.+.++.|++..+.--...++-.+.|+-.+..+-- .
T Consensus 97 e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 97 EH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 32 456677776653 44444 45678899999999987344444456667766655431 1
Q ss_pred eeEEEE-ecCeEEEEecC-Cc--eeeeecccccc
Q 015220 333 QLFLTF-RNRTVAVWNFR-GE--LVTSFEDHLLW 362 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Ge--l~~s~e~H~~~ 362 (411)
+.|+|+ .|++|.||.++ |+ +-++|++|..|
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchh
Confidence 559999 99999999999 44 66689999875
No 180
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.39 E-value=0.04 Score=51.41 Aligned_cols=171 Identities=16% Similarity=0.214 Sum_probs=121.0
Q ss_pred CCCeEEEEEeeCceEEE---------------Eecc-CceeEEE----EeCCEEEEEEecCCCceeeEEEEecCC-----
Q 015220 213 QDSIYKVFDLKNYTMLY---------------SISD-KNVQEIK----ISPGIMLLIFTKASGHVPLKILSIEDG----- 267 (411)
Q Consensus 213 ~ds~ykVWdL~~Ys~iy---------------sLs~-~~VqeIk----ISdG~~Lai~q~t~~~ipiKIl~I~tG----- 267 (411)
.|+.+.+++|.+..... .+.. ++++-++ ..++-+|++.... -|+||....+
T Consensus 54 sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk----~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 54 SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK----KILIYEWNDPRNSFS 129 (275)
T ss_pred cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC----EEEEEEEECCccccc
Confidence 35899999999877665 3332 3777777 2255666666655 6777777653
Q ss_pred cEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeecccc-----------CCCceEEEEeeceeEE
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-----------MTPSAFIFLYENQLFL 336 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f-----------~hpsAfifLy~sqlFl 336 (411)
+.++++... .++..|+.+++++.+...++ ..++|+.+++...+....- .+|-+..-+..++.++
T Consensus 130 ~~~ke~~lp----~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll 204 (275)
T PF00780_consen 130 KLLKEISLP----DPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLL 204 (275)
T ss_pred ceeEEEEcC----CCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEE
Confidence 567775532 78888999999999998544 9999999999988754332 1345555556556666
Q ss_pred EEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 337 TFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 337 Sfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+ |+.--+-|.+|++.+ ...+-|.. ....+.+ ....|+..+.+ +|.||++.||+++
T Consensus 205 ~~-~~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~--~~pyli~~~~~-----------~iEV~~~~~~~lv 260 (275)
T PF00780_consen 205 CY-DNIGVFVNKNGEPSR--KSTIQWSS--APQSVAY--SSPYLIAFSSN-----------SIEVRSLETGELV 260 (275)
T ss_pred Ee-cceEEEEcCCCCcCc--ccEEEcCC--chhEEEE--ECCEEEEECCC-----------EEEEEECcCCcEE
Confidence 65 556667788899888 88888966 3345555 34488877664 8999999999985
No 181
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.37 E-value=0.22 Score=51.01 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=153.7
Q ss_pred ccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC-----CCCcceee
Q 015220 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD-----AGFALFES 189 (411)
Q Consensus 115 G~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~-----~~~~LF~~ 189 (411)
|.-.++|..+++.+-.|-.+..- |-+ .++.+..|-+++.|.+----.-....+.+=|...+++- .+.|-|.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-
Confidence 77888898888888877765433 234 77777777776665332222223333333333333331 1233444
Q ss_pred cccCCCCeEEeeCCCCeEEEeecC-CCeEEEEEeeCceEEEEecc-CceeEE--------EEe-CCEEEEEEecCCCcee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD-KNVQEI--------KIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~~-ds~ykVWdL~~Ys~iysLs~-~~VqeI--------kIS-dG~~Lai~q~t~~~ip 258 (411)
...+|..+-+.+-.-..+++.-. +...-|.|+.+.+.+.+|.= ...+-+ .+| ||-++-+...+.+..
T Consensus 103 -~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~- 180 (352)
T TIGR02658 103 -VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP- 180 (352)
T ss_pred -ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce-
Confidence 56778888887655567767756 99999999999998877761 122222 223 454444333333331
Q ss_pred eEEEEecCCcEEeEeeecccc------CCcceeeeeecceeEEeecCceeeEEEccc-----ceEEEeecc----ccCCC
Q 015220 259 LKILSIEDGTVLKSFNHLLHR------NKKVDFIEQFNEKLLVKQENENLQILDVRN-----FELTEVSRT----EFMTP 323 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h------~K~I~FLE~~~ekllIKQe~~~LkI~dL~t-----~e~~~v~~T----~f~hp 323 (411)
...-...++. +.| .|...-+..+++-.| .++.+.|+.. .+.+.+-.. ..-.|
T Consensus 181 -----------~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 181 -----------KIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred -----------EEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 1111111122 334 442223444466666 9999999544 444442100 01134
Q ss_pred ceE--EEEe--eceeEEEE----------ecCeEEEEecC-Cceeeeec-cccccCCCCccceEEEcCCCC-EEEEEecC
Q 015220 324 SAF--IFLY--ENQLFLTF----------RNRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKA 386 (411)
Q Consensus 324 sAf--ifLy--~sqlFlSf----------sd~tI~iWn~~-Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d 386 (411)
... +.+. .+++|+.- ..++|.++|.. ++.++.+. ++.. -.|++|+||+ +++.-+-.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~-------~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEI-------DSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCce-------eeEEECCCCCeEEEEeCCC
Confidence 442 3333 23777742 22689999999 99988765 6655 5899999999 88877633
Q ss_pred CCCCccccCCceEEEeeecceeee
Q 015220 387 DSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 387 ~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.|+|.+.|..|||.+
T Consensus 321 ---------s~~VsViD~~t~k~i 335 (352)
T TIGR02658 321 ---------DKTLYIFDAETGKEL 335 (352)
T ss_pred ---------CCcEEEEECcCCeEE
Confidence 258999999999875
No 182
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.35 E-value=0.0055 Score=63.98 Aligned_cols=185 Identities=15% Similarity=0.181 Sum_probs=129.9
Q ss_pred ecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE----E---EEec--cCceeEEEEe---CCEEEEEEecCCCc
Q 015220 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----L---YSIS--DKNVQEIKIS---PGIMLLIFTKASGH 256 (411)
Q Consensus 189 ~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~----i---ysLs--~~~VqeIkIS---dG~~Lai~q~t~~~ 256 (411)
...|.|+=+.++ -|++.++|+++.+||++.|.. + ...+ ...|-+++.. ...|-.+.+ -
T Consensus 180 g~glsWn~~~~g------~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d----d 249 (422)
T KOG0264|consen 180 GYGLSWNRQQEG------TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD----D 249 (422)
T ss_pred ccccccccccce------eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC----C
Confidence 455777776554 477889999999999999885 1 2223 3377777776 333333322 2
Q ss_pred eeeEEEEec--CCcEEeEeeeccccCCcceeeeee--cceeEE-eecCceeeEEEccc-ceEEEeeccccCCCceEEEEe
Q 015220 257 VPLKILSIE--DGTVLKSFNHLLHRNKKVDFIEQF--NEKLLV-KQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLY 330 (411)
Q Consensus 257 ipiKIl~I~--tG~~L~t~~~LL~h~K~I~FLE~~--~ekllI-KQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy 330 (411)
-.+.|||+- +-++.++ --+|..+|..++.- +|.+|- .+.+..+.+||+|+ .++.- |.-+|..++..|-
T Consensus 250 ~~L~iwD~R~~~~~~~~~---~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHS---VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEGHEDEVFQVE 323 (422)
T ss_pred CeEEEEEcCCCCCCCccc---ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccCCCcceEEEE
Confidence 468999999 5555555 56899999999864 455533 23479999999998 33332 7778999999996
Q ss_pred ec----eeEEEE-ecCeEEEEecC--Cce-------------eeeeccccccCCCCccceEEEcCCCCE-EEEEecCCCC
Q 015220 331 EN----QLFLTF-RNRTVAVWNFR--GEL-------------VTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSD 389 (411)
Q Consensus 331 ~s----qlFlSf-sd~tI~iWn~~--Gel-------------~~s~e~H~~~~~~c~~n~i~Is~Dqd~-iiS~~~d~~~ 389 (411)
-+ .+|.|- .|+.+-|||+. |+- +=.=-||.. .++..--.|..-. |.|.+.|.
T Consensus 324 WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-----kV~DfsWnp~ePW~I~SvaeDN-- 396 (422)
T KOG0264|consen 324 WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-----KVSDFSWNPNEPWTIASVAEDN-- 396 (422)
T ss_pred eCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc-----ccccccCCCCCCeEEEEecCCc--
Confidence 55 778877 99999999998 654 345668887 5666666676654 44555554
Q ss_pred CccccCCceEEEeee
Q 015220 390 DPLAEGNGKLFVSLL 404 (411)
Q Consensus 390 ~~~~~~~gtI~i~~i 404 (411)
+..||.-
T Consensus 397 --------~LqIW~~ 403 (422)
T KOG0264|consen 397 --------ILQIWQM 403 (422)
T ss_pred --------eEEEeec
Confidence 8888864
No 183
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.007 Score=62.83 Aligned_cols=193 Identities=12% Similarity=0.138 Sum_probs=136.3
Q ss_pred eeCCCCeEEEeecCCCeEEEEEee-----CceEEEEeccCceeEEEEeCCE--EEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLK-----NYTMLYSISDKNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~-----~Ys~iysLs~~~VqeIkISdG~--~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
.=..||.+++. -.++.+.||..+ ..+++--=++-.+..++-+|+. ++|. -+..+...+|||++++++.+.+
T Consensus 111 l~~~dg~Litc-~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~-GGke~~n~lkiwdle~~~qiw~ 188 (412)
T KOG3881|consen 111 LKLADGTLITC-VSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT-GGKENINELKIWDLEQSKQIWS 188 (412)
T ss_pred hhhcCCEEEEE-ecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec-Cchhcccceeeeecccceeeee
Confidence 34567777764 678889999999 4555544456677777777333 2232 3445588999999999999988
Q ss_pred eee----ccccC-----CcceeeeeecceeE-EeecCceeeEEEcccceEEEeecccc-CCCceEEEEeec--eeEEEEe
Q 015220 273 FNH----LLHRN-----KKVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEF-MTPSAFIFLYEN--QLFLTFR 339 (411)
Q Consensus 273 ~~~----LL~h~-----K~I~FLE~~~ekll-IKQe~~~LkI~dL~t~e~~~v~~T~f-~hpsAfifLy~s--qlFlSfs 339 (411)
.+- .|+-. -.+.|+|-.+-+.| =...-|-+++||-+++.+ -|.-.-| .+|=.++.|..+ .+|+.=.
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEEEecc
Confidence 761 12222 24567776655554 456899999999996544 3333333 345555555544 3444337
Q ss_pred cCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+-+...|++ |-+.- .|.|--+ .+..|-.-|.+.+|.|++=|+ -+.|+|+.|-|++
T Consensus 268 ~g~l~~FD~r~~kl~g~~~kg~tG-----sirsih~hp~~~~las~GLDR----------yvRIhD~ktrkll 325 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLKGITG-----SIRSIHCHPTHPVLASCGLDR----------YVRIHDIKTRKLL 325 (412)
T ss_pred cchhheecccCceeeccccCCccC-----CcceEEEcCCCceEEeeccce----------eEEEeecccchhh
Confidence 8889999999 66554 5888888 899999999999999999999 9999999997765
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.35 E-value=0.00065 Score=74.05 Aligned_cols=144 Identities=18% Similarity=0.329 Sum_probs=100.4
Q ss_pred ceeEEEEe-CCEEEEEEe-cCCCceeeEEE-EecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccce
Q 015220 235 NVQEIKIS-PGIMLLIFT-KASGHVPLKIL-SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q-~t~~~ipiKIl-~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e 311 (411)
....|-++ +|=.+++++ ..-.++|=-++ .|.+|+.+..+.- .|.+ .+.|-++-++..|+||-|-.+.
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~W-----dPFD-----~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHW-----DPFD-----DERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeeccc-----CCCC-----hHHeeecccCceEEEEEeccCC
Confidence 33445555 333345544 34456665554 5889998887431 2222 4567889999999999998876
Q ss_pred EEEeeccccCCCceEEEEeec------------eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCC
Q 015220 312 LTEVSRTEFMTPSAFIFLYEN------------QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifLy~s------------qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq 377 (411)
.-++ -++|+..+-...- .++++- .|-||++||++ +.+..+|.+|.. -+=.++-||||
T Consensus 662 l~e~----~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-----qIf~~AWSpdG 732 (1012)
T KOG1445|consen 662 LPEN----EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD-----QIFGIAWSPDG 732 (1012)
T ss_pred CCcc----cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-----ceeEEEECCCC
Confidence 6552 2344444433222 334444 88899999999 999999999999 89999999999
Q ss_pred CEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 378 DLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 378 d~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+.|.+-|||. +|.+++-.++
T Consensus 733 r~~AtVcKDg----------~~rVy~Prs~ 752 (1012)
T KOG1445|consen 733 RRIATVCKDG----------TLRVYEPRSR 752 (1012)
T ss_pred cceeeeecCc----------eEEEeCCCCC
Confidence 9999999996 7776665554
No 185
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.30 E-value=0.0021 Score=65.63 Aligned_cols=179 Identities=17% Similarity=0.290 Sum_probs=130.6
Q ss_pred ccceehhhhccccceeeecccccEEEEEeCCCCce----EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCC
Q 015220 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEV----IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (411)
Q Consensus 104 a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~ev----IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk 179 (411)
.-|++++-++.-+-+.||..|-| ||+-.+|+.. |-++=||.
T Consensus 227 sGefllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V~Ys~--------------------------------- 271 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQVRYSS--------------------------------- 271 (430)
T ss_pred CCceEEEecCCCceeEEecccee--EeeecCcccccccceeEEEecC---------------------------------
Confidence 36899999999999999988887 9887777763 44444443
Q ss_pred CCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-CCEEEEEEecCC
Q 015220 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFTKAS 254 (411)
Q Consensus 180 ~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-dG~~Lai~q~t~ 254 (411)
+|++-+-.+-|+++|+||=-.-.++.++..- +|-+...+ ||-+++.+-
T Consensus 272 ------------------------t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--- 324 (430)
T KOG0640|consen 272 ------------------------TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--- 324 (430)
T ss_pred ------------------------CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---
Confidence 3444455566888999998888888888722 88888888 888876643
Q ss_pred CceeeEEEEecCCcEEeEeeecccc----CCcceeeeeecc---ee-EEeecCceeeEEEcccceEEEeeccccCCCceE
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHR----NKKVDFIEQFNE---KL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h----~K~I~FLE~~~e---kl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
.-+-+|+|-|.||..+++.. |- ..+.+.-++||. +. +....+..+--||-+|+++... ---+|-.|+
T Consensus 325 ~DS~vkLWEi~t~R~l~~Yt---GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~ 399 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKEYT---GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAV 399 (430)
T ss_pred CcceeeeeeecCCceEEEEe---cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCc
Confidence 34668999999999999733 32 233444566664 43 5566788999999999998863 223566666
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecC
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~ 349 (411)
-+.-.+ --|+|. -|..+|+|-.+
T Consensus 400 R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 400 RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eEEEeCCCCCceeeecccceeeeeeec
Confidence 666655 679999 56699999754
No 186
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.023 Score=62.16 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=124.8
Q ss_pred EEEeecCCCeEEEEEeeC-ceEEEEec---cCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 207 VLTYSAQDSIYKVFDLKN-YTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~-Ys~iysLs---~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
.|+.+..++.+.+|++.+ |=+...|. +-.|..+.-++|.=|+...-.. .|.=||++|++.++. .-.-.-.
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg---~i~EwDl~~lk~~~~---~d~~gg~ 112 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG---SITEWDLHTLKQKYN---IDSNGGA 112 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCc---eEEEEecccCceeEE---ecCCCcc
Confidence 388888899999999998 33344554 3388888888777666554433 466799999999997 3344556
Q ss_pred ceeeeeecce--eEEeecCceeeEEEcccceEEEeeccccC-CCceEEEEeec-ee--EEEE-ecCeEEEEecC-Cceee
Q 015220 283 VDFIEQFNEK--LLVKQENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYEN-QL--FLTF-RNRTVAVWNFR-GELVT 354 (411)
Q Consensus 283 I~FLE~~~ek--llIKQe~~~LkI~dL~t~e~~~v~~T~f~-hpsAfifLy~s-ql--FlSf-sd~tI~iWn~~-Gel~~ 354 (411)
|=.|.+.++. +.|.-++.-|.+.+...++++- .+.|| ..+-+..|.-+ .. .++| .|+.|++||.. |.-+-
T Consensus 113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~--~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITY--KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred eeEEEeCCccceEEeecCCceEEEEecCCceEEE--EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE
Confidence 7777777654 5788788888888888887764 23443 34677778877 22 5778 88899999999 76333
Q ss_pred ---eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 ---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 ---s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-=-|.+.-...|-+=+|..=.|+ +|+||-. +|+|+.||-.+|.++
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS----------~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS----------AGTVTFWDSIFGTLI 238 (691)
T ss_pred EeeecccccccCCceEEEEEEEeecC-cEEEecC----------CceEEEEcccCcchh
Confidence 11222222122333333333554 5777643 479999999999864
No 187
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.29 E-value=0.00054 Score=74.31 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=73.5
Q ss_pred eEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe----eceeEEEE-ecCeEEEEecCCceee-------eec-cc
Q 015220 293 LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY----ENQLFLTF-RNRTVAVWNFRGELVT-------SFE-DH 359 (411)
Q Consensus 293 llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy----~sqlFlSf-sd~tI~iWn~~Gel~~-------s~e-~H 359 (411)
|+=+++++.++.||+..++++-+. -.++|--.+=..+ ....|.|+ +|+.|.|||.+-..+- .+. .|
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred EEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 345669999999999999999843 4777765554433 33779999 9999999999922211 111 12
Q ss_pred cc---------------cCCCCccce---EEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 360 LL---------------WHPDCNTNN---IYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 360 ~~---------------~~~~c~~n~---i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.. -++.=.+-. +-...|.++|+|+++.+ |+||+|||.+-++
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D---------~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAAD---------STIKVWDLRKNYT 252 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCC---------cceEEEeeccccc
Confidence 11 122222333 56677999999999854 5999999987665
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.24 E-value=0.0056 Score=56.39 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=83.4
Q ss_pred CCCeE--EEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 203 VNGKV--LTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 203 ~NGki--Lt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
|||.- ++++..+..+.+||++ .+.++++....+..|+.| +|.+|++..-.+..--|.+||..+.+.+.++.+
T Consensus 69 P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---- 143 (194)
T PF08662_consen 69 PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---- 143 (194)
T ss_pred cCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----
Confidence 45554 4555567899999997 889999988888999999 999999987665556799999999999998553
Q ss_pred CCcceeeeeecceeEEee--------cCceeeEEEcccceEEEe
Q 015220 280 NKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNFELTEV 315 (411)
Q Consensus 280 ~K~I~FLE~~~ekllIKQ--------e~~~LkI~dL~t~e~~~v 315 (411)
..+--++=+|++.++.. .++.++||+..-....+.
T Consensus 144 -~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 144 -SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred -CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 23567888999886654 368899999975555553
No 189
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.24 E-value=0.015 Score=67.30 Aligned_cols=188 Identities=13% Similarity=0.148 Sum_probs=111.7
Q ss_pred CCeEEEeecCCCeEEEEEeeC-------ce--EEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecC--CcEEe
Q 015220 204 NGKVLTYSAQDSIYKVFDLKN-------YT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED--GTVLK 271 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~-------Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t--G~~L~ 271 (411)
.+--+++++.||++||||++- |. +-|+.....|..+.++ +|.-+|++.... -|.++.|.- ++.+.
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG---~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG---SVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC---eEEEEEccccccccce
Confidence 444567888899999999974 22 4466666788888777 666666662222 233333332 22221
Q ss_pred EeeeccccCCcc-------eeeeeecc-eeEEeecCceeeEEEcccceEEEeeccccCCCc--eEEEEeec---eeEEEE
Q 015220 272 SFNHLLHRNKKV-------DFIEQFNE-KLLVKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLYEN---QLFLTF 338 (411)
Q Consensus 272 t~~~LL~h~K~I-------~FLE~~~e-kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy~s---qlFlSf 338 (411)
-...+.+-.++- .|.....+ .++..-....|-+||+++....- ++-..|+ ++..+.++ +-++.|
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w---~lk~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW---RLKNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH---hhhcCccccceeEEEecCCceEEEEe
Confidence 111000000000 02222223 45556678889999999855443 3333332 34444444 678888
Q ss_pred -ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCC---EEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 -RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD---LIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd---~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+.|.+.+||+| +.++++-+- + ..|-++.+..-+.-. .+||++-. +++-+-+||++||-|
T Consensus 1214 ts~G~l~lWDLRF~~~i~sw~~--P--~~~~i~~v~~~~~~~~~S~~vs~~~~--------~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFRVPILSWEH--P--ARAPIRHVWLCPTYPQESVSVSAGSS--------SNNEVSTWNMETGLR 1277 (1431)
T ss_pred cCCceEEEEEeecCceeecccC--c--ccCCcceEEeeccCCCCceEEEeccc--------CCCceeeeecccCcc
Confidence 88999999999 999987541 1 126677777665543 45554432 467899999999976
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.24 E-value=0.035 Score=57.51 Aligned_cols=183 Identities=15% Similarity=0.211 Sum_probs=138.1
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcc
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I 283 (411)
..+++-+...=||+|...+....++...+ -|-|+=.|-.++.++.. ..+ ==+||++..-++.+=...+. .+|
T Consensus 17 ~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~-~qp-r~Lkv~~~Kk~~~ICe~~fp----t~I 90 (391)
T KOG2110|consen 17 STLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSI-KQP-RKLKVVHFKKKTTICEIFFP----TSI 90 (391)
T ss_pred eeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEec-CCC-ceEEEEEcccCceEEEEecC----Cce
Confidence 45666677778999999999887777655 56677777888777776 433 45899999988888775542 455
Q ss_pred eeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeece--eEEEE----ecCeEEEEecC-Cceeeee
Q 015220 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ--LFLTF----RNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 284 ~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq--lFlSf----sd~tI~iWn~~-Gel~~s~ 356 (411)
=.+-.-..-|++==|.. |-|||+.+=++..=-.|.=.+|....++..+. -|++. ..|.|.|||.. -.++.++
T Consensus 91 L~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 55555555554444444 99999999888772122224788888888774 47777 56789999999 8899999
Q ss_pred ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce-EEEeeecceeee
Q 015220 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK-LFVSLLMFVTCK 410 (411)
Q Consensus 357 e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt-I~i~~i~tGk~~ 410 (411)
+-|.+ .+-.+++++||-+|.++|.- || |.++++.+|..+
T Consensus 170 ~aH~~-----~lAalafs~~G~llATASeK----------GTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 170 NAHKG-----PLAALAFSPDGTLLATASEK----------GTVIRVFSVPEGQKL 209 (391)
T ss_pred EecCC-----ceeEEEECCCCCEEEEeccC----------ceEEEEEEcCCccEe
Confidence 99999 99999999999999999865 35 689999998754
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.23 E-value=0.0022 Score=64.13 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=54.7
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
++|.|- .|+-|||++-+ +.+++-|.-|.. -+|.++.|||-.++.++|+|. .|-+|++
T Consensus 264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfspd~~lmAaaskD~----------rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSPDCELMAAASKDA----------RISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCCCCchhhhccCCc----------eEEeeec
Confidence 789988 99999999999 999999999999 999999999999999999998 9999986
No 192
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.16 Score=50.73 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=184.0
Q ss_pred eccchHHHhhhcccceeeeccCC-CCcccccccc--cccccceEEEeeccceehhhhccccceeeecccccEEEEEeCCC
Q 015220 59 TMTDAQERFRNIRLQEEYDTHDP-KGHCSMVLPF--LRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTA 135 (411)
Q Consensus 59 ~~~~~~~~f~~~~l~~~fd~~d~-~~~~~~~l~~--l~~RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~ 135 (411)
+.-+-.+-||--+.. +.-|+ .+|-....|| |+||.|-- --|=.|.||++- ||+|.. .|+
T Consensus 48 avgsnskt~ric~yp---~l~~~r~~hea~~~pp~v~~kr~khh------------kgsiyc~~ws~~-geliat--gsn 109 (350)
T KOG0641|consen 48 AVGSNSKTFRICAYP---ALIDLRHAHEAAKQPPSVLCKRNKHH------------KGSIYCTAWSPC-GELIAT--GSN 109 (350)
T ss_pred EeccCCceEEEEccc---cccCcccccccccCCCeEEeeecccc------------CccEEEEEecCc-cCeEEe--cCC
Confidence 444445555542222 33344 2344444554 66776521 123378999865 886653 577
Q ss_pred CceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecC-C
Q 015220 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-D 214 (411)
Q Consensus 136 ~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~-d 214 (411)
|.-|+-+=||-.. |.++- . .=-..|-+..++.-.|.|=-+..|++|++.+. |
T Consensus 110 dk~ik~l~fn~dt------------------~~~~g-------~--dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 110 DKTIKVLPFNADT------------------CNATG-------H--DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred CceEEEEeccccc------------------ccccC-------c--ceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 7777666555422 22220 0 00123556677777888877788999988765 5
Q ss_pred CeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc----cCCcceeeee
Q 015220 215 SIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----RNKKVDFIEQ 288 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~----h~K~I~FLE~ 288 (411)
-.+-+=|-...+.+.-++++ +|...--=+|-|++...+.+ -|+.|+|.---...+.---++ .+.-|-.+.+
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdk---tirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDK---TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCc---eEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 55667788889999999988 66666544888888776654 478888875555444221111 1356778889
Q ss_pred ecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceeeeec-----
Q 015220 289 FNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVTSFE----- 357 (411)
Q Consensus 289 ~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~s~e----- 357 (411)
-+.+.|+++ +++.--+||++-|..++ ....|++.+-++-.+ ..+||. -|.+|++=|++|+|...|.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ 316 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA 316 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE
Confidence 999998875 78899999999999998 777888888888877 778899 7899999999999765442
Q ss_pred cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 358 ~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.|.. ..=.+---|+.=-.||-|+|+ |..+|-+
T Consensus 317 ehkd-----k~i~~rwh~~d~sfisssadk----------t~tlwa~ 348 (350)
T KOG0641|consen 317 EHKD-----KAIQCRWHPQDFSFISSSADK----------TATLWAL 348 (350)
T ss_pred eccC-----ceEEEEecCccceeeeccCcc----------eEEEecc
Confidence 3433 122222334444578899999 8888854
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.015 Score=58.11 Aligned_cols=185 Identities=14% Similarity=0.068 Sum_probs=118.5
Q ss_pred CCCeEEEeecCCCeEEEEEeeCce----------EEEEe--ccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCC-cE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNYT----------MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TV 269 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Ys----------~iysL--s~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG-~~ 269 (411)
+-+++|+....++++-|+.|+.-- .++.- .|-.|-.++.-|.++|- +....++-=.|+=+-. .-
T Consensus 20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls---~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLS---GGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheee---ccCceEEEeeehhhhhhcc
Confidence 457778888889999998887511 11111 11133344444444322 1224455445543322 11
Q ss_pred EeEeeeccccCC----------cceeeee--ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----e
Q 015220 270 LKSFNHLLHRNK----------KVDFIEQ--FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----Q 333 (411)
Q Consensus 270 L~t~~~LL~h~K----------~I~FLE~--~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----q 333 (411)
++. |+..+- +|+.|-+ ...-++.+-++.-|-.|||.+|++.. ++-+|..-+++|.-. |
T Consensus 97 ~K~---lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 97 TKR---LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred chh---hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeeeeecccCcc
Confidence 222 333333 3444443 34456888899999999999999998 999999999999974 5
Q ss_pred eEEEEecCeEEEEecC-CceeeeeccccccCCCCcc-----ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 334 LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNT-----NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 334 lFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~-----n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+|--..|+|+||||++ +.-+..+|-.. +|+|-- =.-++--|.|.++||--. ..-+|++.+-
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk--~~~~lRp~~g~wigala~~edWlvCGgGp-----------~lslwhLrss 237 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYK--NPNLLRPDWGKWIGALAVNEDWLVCGGGP-----------KLSLWHLRSS 237 (325)
T ss_pred eeecCCCccEEEEeccccceeEEecccc--ChhhcCcccCceeEEEeccCceEEecCCC-----------ceeEEeccCC
Confidence 5544499999999999 77777776433 355543 124666788899999877 4788988776
Q ss_pred ee
Q 015220 408 TC 409 (411)
Q Consensus 408 k~ 409 (411)
+|
T Consensus 238 e~ 239 (325)
T KOG0649|consen 238 ES 239 (325)
T ss_pred Cc
Confidence 65
No 194
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.00087 Score=75.92 Aligned_cols=191 Identities=14% Similarity=0.212 Sum_probs=130.2
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc----CceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~----~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
+||..--|..|++++.++.+-||||++-+.=++..+ ++|.-++- +..+=-|..-.+..-..-||||.--+.+-.+
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW-NrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW-NRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc-chhhhHHhhccCCCCCceeccccCCCccccc
Confidence 699999999999999999999999999665555522 24443332 3333233334455567889999988777765
Q ss_pred eeccccCCcceeeeeecce---eEEeecCc---eeeEEEcccce-EEEeeccccCCCceEEEEeec----eeEEEE-ecC
Q 015220 274 NHLLHRNKKVDFIEQFNEK---LLVKQENE---NLQILDVRNFE-LTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNR 341 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ek---llIKQe~~---~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~ 341 (411)
.. .+..-.+..|+=+++. +++++++. .|++||||.-. +.+ ++-.|-..++.+.-. .++||= +|+
T Consensus 201 s~-~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k---~~~~H~~GilslsWc~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 201 SD-TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK---ILEGHQRGILSLSWCPQDPRLLLSSGKDN 276 (1049)
T ss_pred cc-CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh---hhcccccceeeeccCCCCchhhhcccCCC
Confidence 53 2333556788888875 47777654 58999998843 333 566899999998865 666665 999
Q ss_pred eEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 342 tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.|-.||.+ ||.|-.|--.-.| +.+.=+-=++=.++.+.| -.|+|-|+.|.++
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~nW----~fdv~w~pr~P~~~A~as----------fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGNW----CFDVQWCPRNPSVMAAAS----------FDGKISIYSLQGT 329 (1049)
T ss_pred CeeEecCCCceEeeecCCCCcc----eeeeeecCCCcchhhhhe----------eccceeeeeeecC
Confidence 99999999 9999988876666 222111112222222222 2368888888765
No 195
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.17 E-value=0.0046 Score=67.80 Aligned_cols=203 Identities=10% Similarity=0.127 Sum_probs=131.4
Q ss_pred eeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEee-Cce-EEEEeccCceeEEEE
Q 015220 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT-MLYSISDKNVQEIKI 241 (411)
Q Consensus 164 ~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~-~Ys-~iysLs~~~VqeIkI 241 (411)
.|+.+..++++++.=+. ++ .|. .+++++.|+.++.|-|+ .|- .+|+|.++.+--+-+
T Consensus 49 ~l~GH~a~VnC~~~l~~--------s~---~~a----------~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv 107 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPT--------SE---IVA----------EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV 107 (764)
T ss_pred eccCCccceEEEEEccc--------cc---ccc----------eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE
Confidence 47778888888877332 22 122 57889999999999999 333 789999877777777
Q ss_pred eCCEEEEEEecCCCceeeEEEEecCCc--EEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccce--EEEeec
Q 015220 242 SPGIMLLIFTKASGHVPLKILSIEDGT--VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSR 317 (411)
Q Consensus 242 SdG~~Lai~q~t~~~ipiKIl~I~tG~--~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e--~~~v~~ 317 (411)
.++..++... ...--+.+|+.++.+ ++..+.+--+-=-|.-+-++-+.+.++-.-|....+.++-..+ .+..-+
T Consensus 108 ~a~~~~~~~~--~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~ 185 (764)
T KOG1063|consen 108 VARSSVMTCK--AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA 185 (764)
T ss_pred EeeeeEEEee--ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence 7777776663 444456789998777 4444332211111222223334444433333333444444433 233334
Q ss_pred cccCCCceEEEEeec-----ee-EEEE-ecCeEEEEecC-Ccee-------------------------------eeecc
Q 015220 318 TEFMTPSAFIFLYEN-----QL-FLTF-RNRTVAVWNFR-GELV-------------------------------TSFED 358 (411)
Q Consensus 318 T~f~hpsAfifLy~s-----ql-FlSf-sd~tI~iWn~~-Gel~-------------------------------~s~e~ 358 (411)
.+-+|-.|+.-|+.+ .+ +.|. +|+.||||.+. ++.. +=+-|
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G 265 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG 265 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence 677888888877754 34 5566 99999999998 4411 11228
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
|..| ++++-=+|++.-|.|.|+|+ |+-||--
T Consensus 266 HeDW-----V~sv~W~p~~~~LLSASaDk----------smiiW~p 296 (764)
T KOG1063|consen 266 HEDW-----VYSVWWHPEGLDLLSASADK----------SMIIWKP 296 (764)
T ss_pred cccc-----eEEEEEccchhhheecccCc----------ceEEEec
Confidence 8885 89999999999999999999 7777753
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.012 Score=67.49 Aligned_cols=188 Identities=10% Similarity=0.131 Sum_probs=118.4
Q ss_pred CCCCeEEEeecCCCeEEEEEe-eC----ceEE---EEeccCc----eeEEEEe----CCEEEEEEecCCCceeeEEEEec
Q 015220 202 DVNGKVLTYSAQDSIYKVFDL-KN----YTML---YSISDKN----VQEIKIS----PGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL-~~----Ys~i---ysLs~~~----VqeIkIS----dG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
+-+---|..+..|+++|||+= .+ .+++ ..|++.- =.-+-+. .|+++..+ ..--|.|||.+
T Consensus 1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG----d~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG----DVRSIRIWDAH 1195 (1387)
T ss_pred ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC----CeeEEEEEecc
Confidence 334455666778999999952 22 2222 4444330 0002222 45544333 36679999999
Q ss_pred CCcEEeEeeeccccCCcceee--eeecceeEEee-cCceeeEEEcccceEEEeeccccCCCce--EEEEeec----eeEE
Q 015220 266 DGTVLKSFNHLLHRNKKVDFI--EQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSA--FIFLYEN----QLFL 336 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FL--E~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsA--fifLy~s----qlFl 336 (411)
..++.++.- .+.+.=|-.| -+.+++++++- .+..+++||.+.-.+-..-.+.-.|... ++-|--+ .-++
T Consensus 1196 ~E~~~~diP--~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1196 KEQVVADIP--YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred cceeEeecc--cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence 999998632 2333333322 13335665555 8999999999986653322233334444 5555544 2367
Q ss_pred EE-ecCeEEEEecCC-ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 337 TF-RNRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 337 Sf-sd~tI~iWn~~G-el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
|+ .||.|++||+|+ ...+.+..-.-|.-.-....+.+-++-++|.||+. . .|+|||+.-
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q----------~ikIy~~~G 1334 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q----------LIKIYSLSG 1334 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c----------eEEEEecCh
Confidence 77 999999999998 55555555554433335778999999999999999 6 899999753
No 197
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.005 Score=65.97 Aligned_cols=161 Identities=11% Similarity=0.098 Sum_probs=107.2
Q ss_pred CeEEEeecCCCeEEEEEeeCce------EEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 205 GKVLTYSAQDSIYKVFDLKNYT------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~Ys------~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
+--+++...|+-+||||-.+-+ ++.++++- +..+... =.-...|+|..+++--+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t---------~~~~~w~-L~~~~s~~k~~~~~~~~---------- 64 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGT---------CTYTKWG-LSADYSPMKWLSLEKAK---------- 64 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCc---------ceeEEEE-EEeccchHHHHhHHHHh----------
Confidence 3456778889999999987744 34444422 2222111 11233455554444211
Q ss_pred cCCcceeeeeecceeEE--eecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cc
Q 015220 279 RNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GE 351 (411)
Q Consensus 279 h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Ge 351 (411)
-..++..+| --.+..+.+|++..||+..- .+-..|+.-+.+.--+ ..|-|. -|..+..|+++ +-
T Consensus 65 --------~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 65 --------KASLDTSMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred --------hccCCceEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccCceEecCCceeEEEEecccce
Confidence 112222222 22567899999999998872 2334688888876633 235555 89999999999 88
Q ss_pred eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeeeC
Q 015220 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCKI 411 (411)
Q Consensus 352 l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~~ 411 (411)
+.|-+..... ..-++-|||||.++.++|. +|++|||+|+|.++
T Consensus 136 ~~~~~~~~~~-----~~~sl~is~D~~~l~~as~------------~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 136 IIRIWKEQKP-----LVSSLCISPDGKILLTASR------------QIKVLDIETKEVVI 178 (541)
T ss_pred eeeeeccCCC-----ccceEEEcCCCCEEEeccc------------eEEEEEccCceEEE
Confidence 8887766666 8999999999999988764 79999999999874
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.14 E-value=0.0025 Score=64.47 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=99.0
Q ss_pred eEEEEecCCcE--EeEeeeccccCCcceeeeeeccee-EEee--cCceeeEEEcccceEEEeeccccCC-CceEEEEeec
Q 015220 259 LKILSIEDGTV--LKSFNHLLHRNKKVDFIEQFNEKL-LVKQ--ENENLQILDVRNFELTEVSRTEFMT-PSAFIFLYEN 332 (411)
Q Consensus 259 iKIl~I~tG~~--L~t~~~LL~h~K~I~FLE~~~ekl-lIKQ--e~~~LkI~dL~t~e~~~v~~T~f~h-psAfifLy~s 332 (411)
-.||+|++|.. ++| .|..|-|||+=|+-..+.. ++++ ++...++.||++-|---+ .-+... ..+.+=|.-+
T Consensus 175 CTiWdie~~~~~~vkT--QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKT--QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWN 251 (364)
T ss_pred EEEEEEeeccccceee--EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeeccC
Confidence 47999999966 444 7899999999888777555 7777 888999999998432110 012222 2345556655
Q ss_pred ----eeEEEE--ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 333 ----QLFLTF--RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 333 ----qlFlSf--sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
.+..|| -+++|-|-|.| +.++.+|.+|.+ .+|.|+--|.-.--|+-|-|+ .-.-||||
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-----~VNgIaWaPhS~~hictaGDD---------~qaliWDl 317 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-----SVNGIAWAPHSSSHICTAGDD---------CQALIWDL 317 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-----cccceEecCCCCceeeecCCc---------ceEEEEec
Confidence 567888 66799999999 889999999999 899999999988888777776 36778887
Q ss_pred cc
Q 015220 405 MF 406 (411)
Q Consensus 405 ~t 406 (411)
-+
T Consensus 318 ~q 319 (364)
T KOG0290|consen 318 QQ 319 (364)
T ss_pred cc
Confidence 53
No 199
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.07 E-value=0.031 Score=56.86 Aligned_cols=245 Identities=13% Similarity=0.110 Sum_probs=165.0
Q ss_pred EEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCC--CCCCcceeecccCCCCeEEeeCCCC
Q 015220 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DAGFALFESESLKWPGFVEFDDVNG 205 (411)
Q Consensus 128 ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~--~~~~~LF~~~~l~~PgfvEFDd~NG 205 (411)
.-+++..|+.-|-.|=+...-+-++.+| |=+ +..+|.-+.-.-.-.+|- +-..|+++.. +-| +|
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD-~tVR~wevq~~g~~~~ka~~~~~~PvL~v~---------Wsd-dg 84 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAG---SWD-GTVRIWEVQNSGQLVPKAQQSHDGPVLDVC---------WSD-DG 84 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEec---ccC-CceEEEEEecCCcccchhhhccCCCeEEEE---------Ecc-CC
Confidence 3467777888888888888666666544 333 455665543321122221 2334555432 222 34
Q ss_pred eEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEE---EEEEecCCCceeeEEEEecCCcEEeEeeeccccCC
Q 015220 206 KVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIM---LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (411)
Q Consensus 206 kiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~---Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K 281 (411)
--+...+.|+..|+|||.+.+....=.|+ -|..++.=+|+. ||+..=-+ -||-||.-.-+++++..+. -
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK---TlKfWD~R~~~pv~t~~LP----e 157 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK---TLKFWDTRSSNPVATLQLP----E 157 (347)
T ss_pred ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc---ceeecccCCCCeeeeeecc----c
Confidence 44555677999999999999655444443 888888775553 45554433 4899999999999985532 5
Q ss_pred cceeeeeecceeEEeecCceeeEEEcccceEEE---eeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceee--
Q 015220 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVT-- 354 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~---v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~-- 354 (411)
+++.+.+..+=+.++-.+..|.+|||+++.... .++-.| .-..+-+.-..+.|+-+ -+|.+.|-+.+ |.+..
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-eeeEEEEEecCCceEeeeecceEEEEecCCCCccCce
Confidence 789999999999999999999999998854332 233233 33344444455777777 89999999999 76654
Q ss_pred eeccccccCC----CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 355 SFEDHLLWHP----DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 355 s~e~H~~~~~----~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
+|.=|..-.+ -=.+|.|+.-|.-.+|+....| |++..||-
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD----------Gtf~FWDk 280 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD----------GTFSFWDK 280 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCC----------ceEEEecc
Confidence 6667774211 2257899999999999988777 49999984
No 200
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0018 Score=73.47 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=113.9
Q ss_pred EEEeecCCCeEEEEEeeCc---e---EEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 207 VLTYSAQDSIYKVFDLKNY---T---MLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL~~Y---s---~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+++-+.+|+.+.+||-..- . .|-+.++| .|..+.+. -|.+||.+.. -.-|-||||..=+.-.+.. -
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~---~geI~iWDlnn~~tP~~~~-~ 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD---DGEILIWDLNKPETPFTPG-S 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC---CCcEEEeccCCcCCCCCCC-C
Confidence 4666788999999987663 1 33444444 67777666 4555555443 3457799998733333311 0
Q ss_pred cccCCcceeeeeecce-eEEeecCc--eeeEEEcccceEEEeeccccCCCce--EEEEe-----eceeEEEE-ecC--eE
Q 015220 277 LHRNKKVDFIEQFNEK-LLVKQENE--NLQILDVRNFELTEVSRTEFMTPSA--FIFLY-----ENQLFLTF-RNR--TV 343 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek-llIKQe~~--~LkI~dL~t~e~~~v~~T~f~hpsA--fifLy-----~sqlFlSf-sd~--tI 343 (411)
.....+|-+|.=-..- +++++.+. +..||||+..+.+. ..-.|+.. ...|. -+|+.+.- .|+ .|
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii---~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII---KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc---ccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 1122333333322222 36676554 69999999986654 22223332 22233 23665555 443 89
Q ss_pred EEEecC--CceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 344 AVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 344 ~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+||+| -.+++.|++|.- -+=.+--.+ |-++++|..||. .|-+||..|||.+
T Consensus 235 qlWDlR~assP~k~~~~H~~-----GilslsWc~~D~~lllSsgkD~----------~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKILEGHQR-----GILSLSWCPQDPRLLLSSGKDN----------RIICWNPNTGEVL 289 (1049)
T ss_pred EeecccccCCchhhhccccc-----ceeeeccCCCCchhhhcccCCC----------CeeEecCCCceEe
Confidence 999999 669999999987 444444444 448999999998 9999999999975
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.015 Score=60.40 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=130.4
Q ss_pred eCCCCeEEEeecCCCeEEEEEeeCceEEEEe--------ccCceeEEEEeCCEEEEEEecCCCceeeEEEEecC-----C
Q 015220 201 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED-----G 267 (411)
Q Consensus 201 Dd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL--------s~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~t-----G 267 (411)
+|.+..+|..+..+-.+..++.......-++ ...-|...+..||-+++- -+.-.+-+|+++. .
T Consensus 65 ~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc----~~sG~l~~~~~k~~d~hss 140 (412)
T KOG3881|consen 65 VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITC----VSSGNLQVRHDKSGDLHSS 140 (412)
T ss_pred cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEE----ecCCcEEEEeccCCccccc
Confidence 8899999999978888888887776655443 233566666777765433 2334577888883 3
Q ss_pred cEEeEeeeccccCCcceeeeeeccee-EEeecCce----eeEEEcccceEEE----eeccccC--CC---ceEEEEee--
Q 015220 268 TVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENEN----LQILDVRNFELTE----VSRTEFM--TP---SAFIFLYE-- 331 (411)
Q Consensus 268 ~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~----LkI~dL~t~e~~~----v~~T~f~--hp---sAfifLy~-- 331 (411)
++++-.. --++.-|++....= +++-+|.. |+|||+..++.+- ||+-.-+ -| .+..||--
T Consensus 141 ~l~~la~-----g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~ 215 (412)
T KOG3881|consen 141 KLIKLAT-----GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP 215 (412)
T ss_pred cceeeec-----CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCC
Confidence 3443322 25677788887655 67766654 9999999975443 4332211 22 34456666
Q ss_pred ceeEEEE-ecCeEEEEecC-Cc-eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 332 NQLFLTF-RNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 332 sqlFlSf-sd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+.-|+|. +..-+|+||.+ |- ||.+|.=-.. .+..+..+|+|.+|+.|-+-. .+..+|+.+||
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g----------~l~~FD~r~~k 280 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKG----------QLAKFDLRGGK 280 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccc----------hhheecccCce
Confidence 6889999 99999999999 54 7777665544 678899999999999887665 89999999999
Q ss_pred ee
Q 015220 409 CK 410 (411)
Q Consensus 409 ~~ 410 (411)
++
T Consensus 281 l~ 282 (412)
T KOG3881|consen 281 LL 282 (412)
T ss_pred ee
Confidence 75
No 202
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.92 E-value=0.5 Score=46.74 Aligned_cols=209 Identities=13% Similarity=0.197 Sum_probs=134.2
Q ss_pred cccCCCCeEEeeCCCCeEEEeec---CCCeEEEEEeeCc----eEEEEec--cCceeEEEEe-CCEEEEEEecCCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKVLTYSA---QDSIYKVFDLKNY----TMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGkiLt~~~---~ds~ykVWdL~~Y----s~iysLs--~~~VqeIkIS-dG~~Lai~q~t~~~ipi 259 (411)
.....|.|+++|..+...-+... +++.+-.|.+.+= +.+-+.. ...-.-+.++ +|-+|++..-..+. +
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~--v 111 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS--V 111 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE--E
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe--E
Confidence 35678999999887777766666 4778888888874 3444443 4566778888 99999998877665 6
Q ss_pred EEEEecC-CcEEeEeeecc----c------cCCcceeeeeecce--eEEee-cCceeeEEEcccce--EEE---eecccc
Q 015220 260 KILSIED-GTVLKSFNHLL----H------RNKKVDFIEQFNEK--LLVKQ-ENENLQILDVRNFE--LTE---VSRTEF 320 (411)
Q Consensus 260 KIl~I~t-G~~L~t~~~LL----~------h~K~I~FLE~~~ek--llIKQ-e~~~LkI~dL~t~e--~~~---v~~T~f 320 (411)
.+++|.+ |++........ + .......+...+++ +++.. +...|.+|++.... +.. +.-...
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 8899986 66666432111 1 12334577888874 34433 78899999998765 433 233444
Q ss_pred CCCceEEEEeec-eeEEEE-ecCeEEEEecC---Ccee--eeeccc-cccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 321 MTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR---GELV--TSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 321 ~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~---Gel~--~s~e~H-~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
..|..+.|-... .+|++- .+++|.++++. |.+. .+..-. ..+...-....|.|||||++|......
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------ 265 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------ 265 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------
Confidence 567777776554 566776 88999999998 3221 111111 123344467789999999988765544
Q ss_pred ccCCceEEEeee--cceee
Q 015220 393 AEGNGKLFVSLL--MFVTC 409 (411)
Q Consensus 393 ~~~~gtI~i~~i--~tGk~ 409 (411)
..+|-++++ .+|++
T Consensus 266 ---~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 266 ---SNSISVFDLDPATGTL 281 (345)
T ss_dssp ---TTEEEEEEECTTTTTE
T ss_pred ---CCEEEEEEEecCCCce
Confidence 248889988 55654
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.035 Score=55.52 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=105.5
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
.|...+-++++. .|+++--|||++.+.-.++.++ -|..+... +|++|- . . .---++|||..|++....+
T Consensus 122 ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils-G-~--EDGtvRvWd~kt~k~v~~i-- 194 (325)
T KOG0649|consen 122 LDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS-G-A--EDGTVRVWDTKTQKHVSMI-- 194 (325)
T ss_pred eccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee-c-C--CCccEEEEeccccceeEEe--
Confidence 455556666665 7999999999999999999977 56776662 666532 1 1 1234799999999999973
Q ss_pred ccccCCcceeeeeecce----------eEEeecCceeeEEEcccceEEEeeccccCCCceEEEE--eeceeEEEEecCeE
Q 015220 276 LLHRNKKVDFIEQFNEK----------LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL--YENQLFLTFRNRTV 343 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ek----------llIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifL--y~sqlFlSfsd~tI 343 (411)
+..|.-+.+-.++++ -|+--+|.+|-+|+|++.|+++ .|.-|.-+.-+ +..+++..+.-+-+
T Consensus 195 --e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~----vfpipa~v~~v~F~~d~vl~~G~g~~v 268 (325)
T KOG0649|consen 195 --EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTC----VFPIPARVHLVDFVDDCVLIGGEGNHV 268 (325)
T ss_pred --ccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceE----EEecccceeEeeeecceEEEeccccce
Confidence 444444444444333 3566688999999999999996 35555555544 45566777789999
Q ss_pred EEEecCCceeee--ecccc
Q 015220 344 AVWNFRGELVTS--FEDHL 360 (411)
Q Consensus 344 ~iWn~~Gel~~s--~e~H~ 360 (411)
.=|.+.|+|-.. ++.|.
T Consensus 269 ~~~~l~Gvl~a~ip~~s~~ 287 (325)
T KOG0649|consen 269 QSYTLNGVLQANIPVESTA 287 (325)
T ss_pred eeeeeccEEEEeccCCccc
Confidence 999999998873 44443
No 204
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.84 E-value=0.4 Score=47.91 Aligned_cols=212 Identities=17% Similarity=0.240 Sum_probs=117.4
Q ss_pred eccceehhhhccccceeeecccccEEEEEeCCCCce-EE---E-EEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhh
Q 015220 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEV-IR---S-LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (411)
Q Consensus 103 ~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~ev-Ir---s-ifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~ 177 (411)
..++.|++-+..|.-.|||..||+.+-..+...... ++ | +.. ++.+++.+ .+ ..+.| +. +..
T Consensus 158 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~---~~--g~v~a--~d---~~~ 224 (394)
T PRK11138 158 VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGG---DN--GRVSA--VL---MEQ 224 (394)
T ss_pred EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEc---CC--CEEEE--EE---ccC
Confidence 346778888888888999999999888776532111 00 0 111 23333321 11 12222 21 122
Q ss_pred CCCCCCCcceeecc---------------cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe
Q 015220 178 GKPDAGFALFESES---------------LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242 (411)
Q Consensus 178 gk~~~~~~LF~~~~---------------l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS 242 (411)
|+. +.+... -..|-.. +|.+.+ ...++.+.-.|+++.+.+-+-.-.....+.+.
T Consensus 225 G~~-----~W~~~~~~~~~~~~~~~~~~~~~sP~v~-----~~~vy~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 293 (394)
T PRK11138 225 GQL-----IWQQRISQPTGATEIDRLVDVDTTPVVV-----GGVVYA-LAYNGNLVALDLRSGQIVWKREYGSVNDFAVD 293 (394)
T ss_pred Chh-----hheeccccCCCccchhcccccCCCcEEE-----CCEEEE-EEcCCeEEEEECCCCCEEEeecCCCccCcEEE
Confidence 221 222111 1223211 344444 33467777778888777654332233345566
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCC
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT 322 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~h 322 (411)
+|.+.+... .-.+..++++||+.+.+...+.+. ...-..+.++++++..++..|-++|..+|+..---+. .
T Consensus 294 ~~~vy~~~~----~g~l~ald~~tG~~~W~~~~~~~~--~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~---~ 364 (394)
T PRK11138 294 GGRIYLVDQ----NDRVYALDTRGGVELWSQSDLLHR--LLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKV---D 364 (394)
T ss_pred CCEEEEEcC----CCeEEEEECCCCcEEEcccccCCC--cccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc---C
Confidence 776665542 235888899999999875533222 2233346789999999999999999999997651111 1
Q ss_pred CceEE---EEeeceeEEEEecCeEEEEe
Q 015220 323 PSAFI---FLYENQLFLTFRNRTVAVWN 347 (411)
Q Consensus 323 psAfi---fLy~sqlFlSfsd~tI~iWn 347 (411)
...+. .+....+|+.-.|+++-..+
T Consensus 365 ~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 365 SSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 11111 13455777777777665543
No 205
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.74 E-value=0.046 Score=58.78 Aligned_cols=234 Identities=13% Similarity=0.167 Sum_probs=140.6
Q ss_pred EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhh-hhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeE
Q 015220 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (411)
Q Consensus 139 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i-~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~y 217 (411)
|-|+=.|++|. |.+.|. +.|.--.++|+--+...+ +-|| +.|..-|+--- ..-..-+++.++.+|.
T Consensus 37 ~~s~~w~~~n~-lvvas~-~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~----------~s~S~y~~sgG~~~~V 103 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASM-AGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVAC----------ASQSLYEISGGQSGCV 103 (673)
T ss_pred ceeeeccccce-EEEeec-CCceeEEEecccCCCCccceeec-cccchHHHHhh----------hhcceeeeccCcCcee
Confidence 78888999888 666553 445555666654443333 1122 12222222111 1112678999999999
Q ss_pred EEEEeeCceEEEEeccCc--eeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee
Q 015220 218 KVFDLKNYTMLYSISDKN--VQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (411)
Q Consensus 218 kVWdL~~Ys~iysLs~~~--VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl 293 (411)
|+|||+.--.+..|.|++ |.-|..- |..+..++..- -|.|.++.|++..-+|.+- ...-|.-+.-++.+-
T Consensus 104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG----diiih~~~t~~~tt~f~~~--sgqsvRll~ys~skr 177 (673)
T KOG4378|consen 104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG----DIIIHGTKTKQKTTTFTID--SGQSVRLLRYSPSKR 177 (673)
T ss_pred eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC----cEEEEecccCccccceecC--CCCeEEEeecccccc
Confidence 999999544556666653 2222211 22222222221 2456777787777776653 233344555555553
Q ss_pred ---EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCCc-eeeeeccccccCCCC
Q 015220 294 ---LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRGE-LVTSFEDHLLWHPDC 366 (411)
Q Consensus 294 ---lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~Ge-l~~s~e~H~~~~~~c 366 (411)
-+++.+.-.-+||+....++-=-...--.|.+=||.-.+ .||+|. -|.+|-+||.+.. .+.++.-. ||
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~P-- 252 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HP-- 252 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CC--
Confidence 578899999999999876664111222245555666555 678888 9999999999833 22233211 22
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
..+|+.+++|-+|+-|..- |.|--+|+..-
T Consensus 253 -lstvaf~~~G~~L~aG~s~----------G~~i~YD~R~~ 282 (673)
T KOG4378|consen 253 -LSTVAFSECGTYLCAGNSK----------GELIAYDMRST 282 (673)
T ss_pred -cceeeecCCceEEEeecCC----------ceEEEEecccC
Confidence 3689999999999887654 57888887643
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.74 E-value=0.017 Score=58.68 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=68.9
Q ss_pred EEeecCceeeEEEcccceEEEeeccccCCCceEEE-Eeec----eeEEEEecCeEEEEecC-CceeeeeccccccCCCCc
Q 015220 294 LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-LYEN----QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (411)
Q Consensus 294 lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif-Ly~s----qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~ 367 (411)
.+-++++.+.++|..+.+....=+|. .+.+. ++.+ .+|++-+|++|.+||+. ++++++..--. +
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~------~ 79 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG------N 79 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS------E
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC------C
Confidence 35778999999999999887632232 22232 3333 57887799999999999 99999874422 4
Q ss_pred cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 368 TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 368 ~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-..+++|+||+.++.+|-.. |++.|+|.+|.|.+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v 113 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEP---------GTVSVIDAETLEPV 113 (369)
T ss_dssp EEEEEE--TTTEEEEEEEET---------TEEEEEETTT--EE
T ss_pred cceEEEcCCCCEEEEEecCC---------CceeEeccccccce
Confidence 67899999999999887654 49999999998764
No 207
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.0048 Score=66.23 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=79.0
Q ss_pred Ccceeeeeecc--eeEEeecCceeeEEEccc--------ceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEE
Q 015220 281 KKVDFIEQFNE--KLLVKQENENLQILDVRN--------FELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVW 346 (411)
Q Consensus 281 K~I~FLE~~~e--kllIKQe~~~LkI~dL~t--------~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iW 346 (411)
.=|+.+++++. -++-++|++.|++|||++ =|++- |.-+|.--++||... +--+|+ -|++|+.|
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~---tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL---TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeE---EEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 33444444443 357789999999999943 23444 788899999998866 445555 99999999
Q ss_pred ecC--Cc---------eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 347 NFR--GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 347 n~~--Ge---------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
|+- ++ |..+|.||-. .+--++.|+.-|.|.|||.|- |+.+|+...+
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtd-----avw~l~~s~~~~~Llscs~Dg----------Tvr~w~~~~~ 428 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTD-----AVWLLALSSTKDRLLSCSSDG----------TVRLWEPTEE 428 (577)
T ss_pred ccCCCCCcccccCcchhccceecccc-----ceeeeeecccccceeeecCCc----------eEEeeccCCc
Confidence 654 22 3345566655 456789999999999999996 9999987644
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.045 Score=62.93 Aligned_cols=201 Identities=15% Similarity=0.195 Sum_probs=132.8
Q ss_pred ceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-----cCceeEEEEeCC---EEEEEEecCCCce
Q 015220 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-----DKNVQEIKISPG---IMLLIFTKASGHV 257 (411)
Q Consensus 186 LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-----~~~VqeIkISdG---~~Lai~q~t~~~i 257 (411)
-|.+....-|--+-|-.-.--+.+ ..+...++|||.+..+.+-.-+ +..|+++.+=++ -||++.... -
T Consensus 1058 ~~~~~n~~~pk~~~~hpf~p~i~~-ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d---G 1133 (1387)
T KOG1517|consen 1058 KFMTGNNQPPKTLKFHPFEPQIAA-ADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD---G 1133 (1387)
T ss_pred HHHhcCCCCCceeeecCCCceeEE-cCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC---c
Confidence 345555556777777665555544 3447889999999999884444 348888887733 344444333 3
Q ss_pred eeEEEEe-cCC---cEEeEeeeccccCCc----ce---eeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCCce
Q 015220 258 PLKILSI-EDG---TVLKSFNHLLHRNKK----VD---FIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSA 325 (411)
Q Consensus 258 piKIl~I-~tG---~~L~t~~~LL~h~K~----I~---FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hpsA 325 (411)
-|+||.= .++ ..|.|.-.-|--.++ -. --+|-.++|++.-+-..|+|||..+-.... || +++...
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP---~~s~t~ 1210 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP---YGSSTL 1210 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc---cCCCcc
Confidence 6888853 332 233332211111111 11 124566777777778999999998755443 22 224455
Q ss_pred EEEEee----ceeEEEE-ecCeEEEEecC-Cc---eeeeeccccccCCCCccceEEEcCCCCE-EEEEecCCCCCccccC
Q 015220 326 FIFLYE----NQLFLTF-RNRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSDDPLAEG 395 (411)
Q Consensus 326 fifLy~----sqlFlSf-sd~tI~iWn~~-Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~-iiS~~~d~~~~~~~~~ 395 (411)
+..|-- ..+++.| .||+||+||-| .. +++..-.|..|.| +.++-+-+.|.- |||||.|-
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~---Iv~~slq~~G~~elvSgs~~G-------- 1279 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP---IVHLSLQRQGLGELVSGSQDG-------- 1279 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc---ceeEEeecCCCcceeeeccCC--------
Confidence 555442 3566666 99999999999 32 7888899999777 899999998887 99999985
Q ss_pred CceEEEeeecc
Q 015220 396 NGKLFVSLLMF 406 (411)
Q Consensus 396 ~gtI~i~~i~t 406 (411)
.|.+||+..
T Consensus 1280 --~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1280 --DIQLLDLRM 1288 (1387)
T ss_pred --eEEEEeccc
Confidence 999999976
No 209
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.64 E-value=0.011 Score=61.58 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=75.0
Q ss_pred CCCeEEEeecCCCeEEEEEeeCc---eEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec---CCcEEeEe
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---DGTVLKSF 273 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~Y---s~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---tG~~L~t~ 273 (411)
...-++++|+.|+++||||.+.. .++.. +.+ +|-.|.-+ +--|||.+.-. -.++||||- .|++..+|
T Consensus 268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~Dd---Gt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDD---GTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred ccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCC---ceEEEEEhhhccCCCcceeE
Confidence 44568899999999999999998 45544 444 66666666 33366665433 468999986 57777886
Q ss_pred eeccccCCcceeeeee---cceeEEeecCceeeEEEccc
Q 015220 274 NHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDVRN 309 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~---~ekllIKQe~~~LkI~dL~t 309 (411)
+ .|+.||..||-+ -.-+..-.+++.|-||||..
T Consensus 344 k---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 344 K---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred E---eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 6 699999999998 45556667999999999976
No 210
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.61 E-value=0.1 Score=56.20 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=126.0
Q ss_pred CeEEEEEeeCceEEEEec--cCceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeee
Q 015220 215 SIYKVFDLKNYTMLYSIS--DKNVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysLs--~~~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~ 289 (411)
--.|+||-.+-+-|+.|- +..|--+..| .|..|+..+-.++++ +.||+-+-|+.+...+ -+.|+=|.+-|
T Consensus 134 phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~-lSVWdWqk~~~~~~vk----~sne~v~~a~F 208 (626)
T KOG2106|consen 134 PHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHM-LSVWDWQKKAKLGPVK----TSNEVVFLATF 208 (626)
T ss_pred CeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccc-cchhhchhhhccCcce----eccceEEEEEe
Confidence 357999988888787776 4477777777 777777777777665 8999999998887633 23566666655
Q ss_pred c---ceeEEeecCceeeEEEcccceEEEeeccccCCCc--eEEEEe--eceeEEEE-ecCeEEEEecCCceee-eecccc
Q 015220 290 N---EKLLVKQENENLQILDVRNFELTEVSRTEFMTPS--AFIFLY--ENQLFLTF-RNRTVAVWNFRGELVT-SFEDHL 360 (411)
Q Consensus 290 ~---ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy--~sqlFlSf-sd~tI~iWn~~Gel~~-s~e~H~ 360 (411)
+ .+++|-=+..-|--|++..+-+.+= -..|..++ -+.++. ++..-+|+ |+++|.||+..|...+ .---|-
T Consensus 209 HPtd~nliit~Gk~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ 287 (626)
T KOG2106|consen 209 HPTDPNLIITCGKGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHD 287 (626)
T ss_pred ccCCCcEEEEeCCceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecC
Confidence 4 5678888999999999999988871 13344443 444544 56889999 9999999999977554 333777
Q ss_pred ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 361 ~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+ -+-.+..-.||.++ ||.||+ .|-.||
T Consensus 288 g-----gv~~L~~lr~Gtll-SGgKDR----------ki~~Wd 314 (626)
T KOG2106|consen 288 G-----GVFSLCMLRDGTLL-SGGKDR----------KIILWD 314 (626)
T ss_pred C-----ceEEEEEecCccEe-ecCccc----------eEEecc
Confidence 7 88889999999766 599999 888887
No 211
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.59 E-value=0.054 Score=58.29 Aligned_cols=140 Identities=16% Similarity=0.289 Sum_probs=102.0
Q ss_pred eEEeeCCCCeEEEee---cCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCcee-------eEEEEec
Q 015220 197 FVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVP-------LKILSIE 265 (411)
Q Consensus 197 fvEFDd~NGkiLt~~---~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ip-------iKIl~I~ 265 (411)
-|-|-..||-.+..- +.++..-|||-+-- +...++|-| ++.++|.+-|+..-++ +--|+++
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~--------~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK--------AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhh--------hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 345555666555543 44677889998754 356677777 7778888888775544 4679999
Q ss_pred CCcEEeEeeeccccC-CcceeeeeecceeE-EeecCceeeEEEcccceEEEeeccccCCCceEEEEe--eceeEEEE-ec
Q 015220 266 DGTVLKSFNHLLHRN-KKVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTF-RN 340 (411)
Q Consensus 266 tG~~L~t~~~LL~h~-K~I~FLE~~~ekll-IKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy--~sqlFlSf-sd 340 (411)
+|-+.++-...=++. |-|..+.-.+++.. -.-.+.+|.||+..+..+.+ +.+.|+-.+.+|- -+..+||+ +|
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k---~~~aH~ggv~~L~~lr~GtllSGgKD 307 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK---QVHAHDGGVFSLCMLRDGTLLSGGKD 307 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe---EeeecCCceEEEEEecCccEeecCcc
Confidence 999998766443443 44566666666664 45578899999999988887 8889999998765 44778889 99
Q ss_pred CeEEEEe
Q 015220 341 RTVAVWN 347 (411)
Q Consensus 341 ~tI~iWn 347 (411)
++|..||
T Consensus 308 Rki~~Wd 314 (626)
T KOG2106|consen 308 RKIILWD 314 (626)
T ss_pred ceEEecc
Confidence 9999998
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.0059 Score=63.38 Aligned_cols=133 Identities=12% Similarity=0.054 Sum_probs=92.2
Q ss_pred ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE
Q 015220 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 235 ~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~ 314 (411)
++..|.-.+| -+.-..+|+.-.-++..++.|.....+. -....+|-+...++.+-|+
T Consensus 85 ~~~~vG~~~~--~~~~~~~h~~~~~~~~k~~~~~~~~~~e----~~~~~d~~~~~~a~v~~~l----------------- 141 (398)
T KOG0771|consen 85 GIILVGCDDG--APYRESVHPNGNGRARKLPSGCECFHFE----FVASSDFNAETAANVYQKL----------------- 141 (398)
T ss_pred CeeEeccCCC--cchhhhccccCCeeeeecCCcccccccc----cccccccchhhhhhHhHHH-----------------
Confidence 4444444444 3445556788888888988888754433 2244455554444333222
Q ss_pred eeccccCCCceEEEEeeceeEEEE-ecCeEEEEe-cCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcc
Q 015220 315 VSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWN-FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn-~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~ 392 (411)
..|+.-..+-|-.....+.|+ -|+++|||+ ++-..+-.+..|.. +++.+-.||||++|+|=++|
T Consensus 142 ---~~~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-----eV~DL~FS~dgk~lasig~d------ 207 (398)
T KOG0771|consen 142 ---VDFGQQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-----EVKDLDFSPDGKFLASIGAD------ 207 (398)
T ss_pred ---hhcCcceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC-----ccccceeCCCCcEEEEecCC------
Confidence 333333333333344778888 999999999 77888889999999 99999999999999999999
Q ss_pred ccCCceEEEeeecceee
Q 015220 393 AEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 393 ~~~~gtI~i~~i~tGk~ 409 (411)
+--||+..||-+
T Consensus 208 -----~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 208 -----SARVWSVNTGAA 219 (398)
T ss_pred -----ceEEEEeccCch
Confidence 578999999844
No 213
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.53 E-value=0.47 Score=48.87 Aligned_cols=195 Identities=11% Similarity=0.057 Sum_probs=102.1
Q ss_pred cccCCCCeEEeeCCCCeE--EEeec---CCCeEEEEEeeCce--EEEEeccCceeEEEEe-CCEEEEEEec--CCCceee
Q 015220 190 ESLKWPGFVEFDDVNGKV--LTYSA---QDSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTK--ASGHVPL 259 (411)
Q Consensus 190 ~~l~~PgfvEFDd~NGki--Lt~~~---~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS-dG~~Lai~q~--t~~~ipi 259 (411)
+....|.| -|+|+- ++|-+ ....+-+.++.+.+ .|-..+. .....+.| ||..||+... .+..+++
T Consensus 185 ~~~~sP~w----SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g-~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 185 SLSITPTW----MHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG-NQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred CCcccceE----ccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC-CccceEECCCCCEEEEEECCCCCcceeE
Confidence 34456655 356542 32222 23445556776654 3333333 34457888 8866665542 3456888
Q ss_pred EEEEecCC---cEEeEeeeccccCCcc-eeeeeecce--eEEee-cCceeeEE--Ecc--cceEEEeeccccCCCceEEE
Q 015220 260 KILSIEDG---TVLKSFNHLLHRNKKV-DFIEQFNEK--LLVKQ-ENENLQIL--DVR--NFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 260 KIl~I~tG---~~L~t~~~LL~h~K~I-~FLE~~~ek--llIKQ-e~~~LkI~--dL~--t~e~~~v~~T~f~hpsAfif 328 (411)
.+|++.+| +... +......+ .-...++|+ +...+ .+...+|| |+. .++...+ |. +......
T Consensus 260 ~~~~~~~g~~g~~~~----lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l--t~--~~~~~~~ 331 (428)
T PRK01029 260 QSFSLETGAIGKPRR----LLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL--TK--KYRNSSC 331 (428)
T ss_pred EEeecccCCCCcceE----eecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe--cc--CCCCccc
Confidence 88999874 3222 22211112 234667775 33333 33444555 443 2444443 21 1112222
Q ss_pred Eeec----eeEEEE-ec--CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 329 LYEN----QLFLTF-RN--RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 329 Ly~s----qlFlSf-sd--~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
...+ .+.++. .+ ..|.+||+.|.-.+.+..... ...+...||||+.|+-...+. +.+.|-+
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~-----~~~~p~wSpDG~~L~f~~~~~-------g~~~L~~ 399 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE-----NKESPSWAIDSLHLVYSAGNS-------NESELYL 399 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC-----CccceEECCCCCEEEEEECCC-------CCceEEE
Confidence 2223 333333 22 368999998444454543322 445688999999876544332 3468899
Q ss_pred eeecceee
Q 015220 402 SLLMFVTC 409 (411)
Q Consensus 402 ~~i~tGk~ 409 (411)
+|+.+|+.
T Consensus 400 vdl~~g~~ 407 (428)
T PRK01029 400 ISLITKKT 407 (428)
T ss_pred EECCCCCE
Confidence 99988875
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.45 E-value=0.052 Score=61.64 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=125.4
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCc-------eeeEEEEec-CCcEE
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGH-------VPLKILSIE-DGTVL 270 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~-------ipiKIl~I~-tG~~L 270 (411)
++=..|.++.+-... +..-+||.+...++..+-..+..- ..-..+...+...-+ --|-+|..+ |-++.
T Consensus 94 ~l~~e~k~i~l~~~~-ns~~i~d~~~~~~~~~i~~~er~~---l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 94 KLFEENKKIALVTSR-NSLLIRDSKNSSVLSKIQSDERCT---LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred chhhhcceEEEEEcC-ceEEEEecccCceehhcCCCceEE---EEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 444556676665554 457789998888776665442211 111111111111111 124456555 22222
Q ss_pred eEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccceEEEeeccccCCCceEEE--EeeceeEEEEecCeEEEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF--LYENQLFLTFRNRTVAVW 346 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfif--Ly~sqlFlSfsd~tI~iW 346 (411)
.+.||.-.|=-|--+.++. ...+++-.+++|++.+++--. .|.|+||.-+-. +..+.+.-.+.|=|.++|
T Consensus 170 ----~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW 243 (967)
T KOG0974|consen 170 ----RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPNRIITVGEDCTCRVW 243 (967)
T ss_pred ----eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccceeEEeccceEEEEE
Confidence 3678888887888866655 556699999999999987544 599999986543 344455555589999999
Q ss_pred ecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 347 NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 347 n~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.-+|+-+..+++|..- -+-.+++.+++-+++++-.|. +|++||+.+
T Consensus 244 ~~~~~~l~~y~~h~g~----~iw~~~~~~~~~~~vT~g~Ds----------~lk~~~l~~ 289 (967)
T KOG0974|consen 244 GVNGTQLEVYDEHSGK----GIWKIAVPIGVIIKVTGGNDS----------TLKLWDLNG 289 (967)
T ss_pred ecccceehhhhhhhhc----ceeEEEEcCCceEEEeeccCc----------chhhhhhhc
Confidence 9999999999999984 577899999999999999997 999999865
No 215
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.0043 Score=63.44 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=57.0
Q ss_pred eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.+++++ -||.|-||||. =.+-+.|..|.. -+.++.-|+||..|++.|.|- +|++||++.|.|+
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-----pi~sl~WS~dgr~LltsS~D~----------si~lwDl~~gs~l 100 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFRIARMLSAHVR-----PITSLCWSRDGRKLLTSSRDW----------SIKLWDLLKGSPL 100 (405)
T ss_pred ceeeeeccCCcEEEEEccccchhhhhhcccc-----ceeEEEecCCCCEeeeecCCc----------eeEEEeccCCCce
Confidence 556677 89999999999 457779999999 899999999999999999999 9999999999875
No 216
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.048 Score=58.85 Aligned_cols=183 Identities=17% Similarity=0.259 Sum_probs=127.5
Q ss_pred EEEeecCCCeEEEEEe--------eCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEec---------C
Q 015220 207 VLTYSAQDSIYKVFDL--------KNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---------D 266 (411)
Q Consensus 207 iLt~~~~ds~ykVWdL--------~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---------t 266 (411)
+|+....++++|+|+| +..++||+.-++ .|..+.++ +|..+...-.-. .|..|++. +
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg---~I~~w~~p~n~dp~ds~d 384 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG---TIRCWNLPPNQDPDDSYD 384 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc---eeeeeccCCCCCcccccC
Confidence 3455566999999999 235688999987 78888887 777655444333 36778665 1
Q ss_pred CcEEeEeeeccccCCcceeeeee--cceeEEeecCceeeEEEcccceE--EE----------eeccccC---CCceEEEE
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFEL--TE----------VSRTEFM---TPSAFIFL 329 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~--~ekllIKQe~~~LkI~dL~t~e~--~~----------v~~T~f~---hpsAfifL 329 (411)
-..+-. .++||.-.|--++.+ ++.|+.-+.+.++++|+-...++ +. |..|-+. .-..|.+.
T Consensus 385 p~vl~~--~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 385 PSVLSG--TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred cchhcc--ceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccc
Confidence 112211 488999888666665 45678888999999999988777 11 1111110 00111121
Q ss_pred ee----------------------------------c--eeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceE
Q 015220 330 YE----------------------------------N--QLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 371 (411)
Q Consensus 330 y~----------------------------------s--qlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i 371 (411)
|+ + -+-++. .|++|++.+.. |+++-+..-|.- ....+
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-----svtsl 537 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-----SVTSL 537 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc-----eecce
Confidence 11 0 223333 89999999999 999999999999 99999
Q ss_pred EEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 372 YITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 372 ~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
+|-|.|=.++||++|. ++-+|.+..-.|
T Consensus 538 ai~~ng~~l~s~s~d~----------sv~l~kld~k~~ 565 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDG----------SVRLWKLDVKTC 565 (577)
T ss_pred eecCCCceEEeecCCc----------eeehhhccchhe
Confidence 9999999999999997 888888765444
No 217
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.35 E-value=0.068 Score=55.98 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=104.4
Q ss_pred ccCceeEEEEe-CCE-EEEEEecCCCceeeEEEEecCCc---EEeEeeeccccCCcceeeeeecceeEEee--cCceeeE
Q 015220 232 SDKNVQEIKIS-PGI-MLLIFTKASGHVPLKILSIEDGT---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQI 304 (411)
Q Consensus 232 s~~~VqeIkIS-dG~-~Lai~q~t~~~ipiKIl~I~tG~---~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI 304 (411)
.++.|..+.+- ++. +||+.-..+...+-+|..-+.|+ .+.-..-|-+|.+.|+.+-..+++-++++ .+..+-|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34455555554 222 66666666554444444334444 22233357899999999999999999988 4567788
Q ss_pred EEcc--------c-----ceEEEeeccccCCCceEEEEeec--eeEE-EE-ecCeEEEEecC-CceeeeeccccccCCCC
Q 015220 305 LDVR--------N-----FELTEVSRTEFMTPSAFIFLYEN--QLFL-TF-RNRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (411)
Q Consensus 305 ~dL~--------t-----~e~~~v~~T~f~hpsAfifLy~s--qlFl-Sf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c 366 (411)
|=.. + .|.+.|.+.+-+|-+...-|+-+ ..|+ +. .|+++++||.+ |.+++.+.+|..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~----- 166 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH----- 166 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc-----
Confidence 8766 5 77788888888898888888766 3344 44 89999999999 999999999998
Q ss_pred ccceEEEcCCCCEEEEEecCC
Q 015220 367 NTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
+++-++-.|-.+.+.|=+.|.
T Consensus 167 yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccceeecchhhhhhhhhccCc
Confidence 455555555555555555444
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.12 Score=57.80 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=112.9
Q ss_pred EeeCCCC--eEEEeecCCCeEEEEEeeCceEEEEeccC-ceeEEEEeCCEEE---EEEecCCCceeeEEEEecCCcEEeE
Q 015220 199 EFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIML---LIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 199 EFDd~NG--kiLt~~~~ds~ykVWdL~~Ys~iysLs~~-~VqeIkISdG~~L---ai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
++|..+. -.+..+..+++++|||..+.+++.+.+.+ .|....+.+-++- ..+--...+.-+--..-+.++-...
T Consensus 64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~ 143 (792)
T KOG1963|consen 64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSR 143 (792)
T ss_pred eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceee
Confidence 4444444 34557889999999999999999888755 6666655533321 1111111111111111223333333
Q ss_pred eeeccccCCcceeeeee--cceeEEee--------cCceeeEEEcccceEEEeecc-ccCCCceEEEEe--ec-eeEEEE
Q 015220 273 FNHLLHRNKKVDFIEQF--NEKLLVKQ--------ENENLQILDVRNFELTEVSRT-EFMTPSAFIFLY--EN-QLFLTF 338 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~--~ekllIKQ--------e~~~LkI~dL~t~e~~~v~~T-~f~hpsAfifLy--~s-qlFlSf 338 (411)
+...--...+.||+..+ +.-+..-+ -.-++-+|++.++....++.- ---|..-+-+.+ .+ ....++
T Consensus 144 ~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~ 223 (792)
T KOG1963|consen 144 FVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAG 223 (792)
T ss_pred eEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEe
Confidence 22222223344444444 33333322 345778899988663322111 111333233333 33 455566
Q ss_pred -ecCeEEEEecCC-c----eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 339 -RNRTVAVWNFRG-E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 339 -sd~tI~iWn~~G-e----l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+||.|.+|.=-| + -.|.|-=|-. +++.+.-|+||-.|.||.... -.-+|.+.|||
T Consensus 224 d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-----~V~~L~fS~~G~~LlSGG~E~----------VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 224 DSDGRILVWRDFGSSDDSETCTLLHWHHD-----EVNSLSFSSDGAYLLSGGREG----------VLVLWQLETGK 284 (792)
T ss_pred ccCCcEEEEeccccccccccceEEEeccc-----ccceeEEecCCceEeecccce----------EEEEEeecCCC
Confidence 999999998777 2 4456666655 899999999999999999886 88899999987
No 219
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.32 E-value=0.25 Score=53.56 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=84.7
Q ss_pred ccccCCcceeeee--ecceeEEeecCceeeEEEcc-cceEEEeeccccC-CCceEEEEeec----eeEEEE-ecCeEEEE
Q 015220 276 LLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVR-NFELTEVSRTEFM-TPSAFIFLYEN----QLFLTF-RNRTVAVW 346 (411)
Q Consensus 276 LL~h~K~I~FLE~--~~ekllIKQe~~~LkI~dL~-t~e~~~v~~T~f~-hpsAfifLy~s----qlFlSf-sd~tI~iW 346 (411)
...|--+|+.+.. |..++++..++=..+||... ...+. +.|. ++.-+..++-| -+|++. .+|.|.+|
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 3455567777764 56788999999999999988 44444 3343 44447778877 789999 69999999
Q ss_pred ecC---CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 347 NFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 347 n~~---Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
||. -+++++..-+.. ..+.+.-++.|++|+.|..- |+|.|+++..
T Consensus 470 DLl~~~~~Pv~s~~~~~~-----~l~~~~~s~~g~~lavGd~~----------G~~~~~~l~~ 517 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKVCSP-----ALTRVRWSPNGKLLAVGDAN----------GTTHILKLSE 517 (555)
T ss_pred hhhccccCCccccccccc-----ccceeecCCCCcEEEEecCC----------CcEEEEEcCc
Confidence 998 447777666633 77888899999999998654 6999999853
No 220
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.32 E-value=0.042 Score=59.13 Aligned_cols=187 Identities=18% Similarity=0.223 Sum_probs=127.0
Q ss_pred CCeEEeeC--CCCeEEEeecCCCeEEEEEeeCce----EEEEeccC---ceeEEEEeCCEEEEEEecCCCceeeEEEEec
Q 015220 195 PGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYT----MLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (411)
Q Consensus 195 PgfvEFDd--~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs~~---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~ 265 (411)
||-.-|+- .|--++++.+.|+.+++|.=..-. .+..++.+ =|.-++.| |..++-+.++. +|||||+
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~--Vkiwdl~ 109 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS---LYEISGGQSGC--VKIWDLR 109 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc---eeeeccCcCce--eeehhhH
Confidence 55444432 334678888999999999865542 33444433 23333333 44444444443 6999999
Q ss_pred CCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEE--Eeec----eeEEE
Q 015220 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIF--LYEN----QLFLT 337 (411)
Q Consensus 266 tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif--Ly~s----qlFlS 337 (411)
.++.+. +|-+|+..|-.+.--+---+|++ -+.-|-|.++.++... |.|.||+...- |-++ -++.+
T Consensus 110 -~kl~hr--~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t----t~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 110 -AKLIHR--FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT----TTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred -HHHHhh--hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc----cceecCCCCeEEEeecccccceeeEe
Confidence 555554 26689988888887766666666 6788999999999887 89999976554 5555 33333
Q ss_pred E-ecCeEEEEecCCc-eee-eeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 338 F-RNRTVAVWNFRGE-LVT-SFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 338 f-sd~tI~iWn~~Ge-l~~-s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
. -+|+|.+||.+|- +.- -.+.|.. -..-|-.||-+ .+|+|-.-|+ .|+++|+.+-+
T Consensus 183 asd~G~VtlwDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG~Dk----------ki~~yD~~s~~ 242 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVGYDK----------KINIYDIRSQA 242 (673)
T ss_pred eccCCeEEEEeccCCCcccchhhhccC-----CcCcceecCCccceEEEecccc----------eEEEeeccccc
Confidence 3 6779999999976 443 5678887 55566666655 4677888888 99999987543
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.042 Score=57.27 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=111.6
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceE-EEEeccC-ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDK-NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~-iysLs~~-~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
.-|-|- .+|..|+..+.|+++|||+.-..+. ++.+.++ +|.++.+| ||.+|+.-... -..||+..||-.+.+
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d----~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD----SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC----ceEEEEeccCchhhh
Confidence 344453 5778888899999999999666664 4555555 99999999 99987765444 789999999955554
Q ss_pred eeeccccCCc-----ceeeeee-cceeEEe---ecCceeeEEEcccceE--EEeeccccCCCceEEEEeec--eeEEEE-
Q 015220 273 FNHLLHRNKK-----VDFIEQF-NEKLLVK---QENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYEN--QLFLTF- 338 (411)
Q Consensus 273 ~~~LL~h~K~-----I~FLE~~-~ekllIK---Qe~~~LkI~dL~t~e~--~~v~~T~f~hpsAfifLy~s--qlFlSf- 338 (411)
+=+..|+ +.|...- .|.++++ +.+..+..||+-.-.. +.-.++.-.--+...+++.+ .-|+..
T Consensus 223 ---~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 223 ---KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred ---cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 2112222 2222111 1333322 2334444444322111 00000000011345566666 445555
Q ss_pred -ecCeEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 339 -RNRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 339 -sd~tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.||.|.|++.. -..+- .=+-|.+ .+..+.++||-....|=|.|.
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~aH~~-----~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKEAHLG-----FVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehhhhee-----eeeeEEEcCCcCcccccccCC
Confidence 89999999988 55444 6678999 999999999999999877776
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.17 E-value=0.65 Score=47.89 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=94.1
Q ss_pred EEEEEeeCceEEEEeccC--ceeEEEEe-CCEE--EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 217 YKVFDLKNYTMLYSISDK--NVQEIKIS-PGIM--LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 217 ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~--Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
+-+.|...+.. ..|+.. ....=+.| ||.- ++.....+.+.-|-+.++.+|+...-.. +=+ .......++|
T Consensus 167 l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g---~~~~p~wSPD 241 (428)
T PRK01029 167 LWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG---NQLMPTFSPR 241 (428)
T ss_pred EEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC---CccceEECCC
Confidence 33444444443 445533 45666888 6532 2223334455667788999987544222 111 1223466777
Q ss_pred ee--EEee---cCce--eeEEEccc---ceEEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEec--C--Cceeee
Q 015220 292 KL--LVKQ---ENEN--LQILDVRN---FELTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNF--R--GELVTS 355 (411)
Q Consensus 292 kl--lIKQ---e~~~--LkI~dL~t---~e~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~--~--Gel~~s 355 (411)
+- ...+ ++.. +++||+.+ ++...+....+.......+-... ++.++- .++..++|.. . |...+.
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 53 2222 2223 34478776 45555433222232333333222 343333 5666777754 3 223444
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..+.. +......||||+.|+..+.+. +...|.+||+.+|++.
T Consensus 322 lt~~~~-----~~~~p~wSPDG~~Laf~~~~~-------g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 322 LTKKYR-----NSSCPAWSPDGKKIAFCSVIK-------GVRQICVYDLATGRDY 364 (428)
T ss_pred eccCCC-----CccceeECCCCCEEEEEEcCC-------CCcEEEEEECCCCCeE
Confidence 444433 445678999999888665442 3458999999999863
No 223
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.15 E-value=0.048 Score=55.51 Aligned_cols=92 Identities=20% Similarity=0.156 Sum_probs=67.5
Q ss_pred cCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 212 AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
.+|+++..||++|.++.++|.+-+.|-++==| +-++|
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD---------------------------------fNpnk---------- 226 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD---------------------------------FNPNK---------- 226 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeecc---------------------------------CCCCc----------
Confidence 57999999999999999999976544333111 01111
Q ss_pred eeEEee--cCceeeEEEccc-ceEEEeeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecC
Q 015220 292 KLLVKQ--ENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 292 kllIKQ--e~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~ 349 (411)
..++.. .+..++|||.++ ..+.. ++=+|.-|+-++-.+ ||.||+ +|-.|-+|.-.
T Consensus 227 q~~lvt~gDdgyvriWD~R~tk~pv~---el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 227 QHILVTCGDDGYVRIWDTRKTKFPVQ---ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred eEEEEEcCCCccEEEEeccCCCcccc---ccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 012233 567899999987 55665 788899999999877 999999 88899999754
No 224
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.12 E-value=0.0095 Score=61.53 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=87.1
Q ss_pred ccCCcceeeeeec-ceeEEee-cCceeeEEEcccc---eEEEeeccccCCCceEEEEeec-----eeEEEEecCeEEEEe
Q 015220 278 HRNKKVDFIEQFN-EKLLVKQ-ENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYEN-----QLFLTFRNRTVAVWN 347 (411)
Q Consensus 278 ~h~K~I~FLE~~~-ekllIKQ-e~~~LkI~dL~t~---e~~~v~~T~f~hpsAfifLy~s-----qlFlSfsd~tI~iWn 347 (411)
..+.+|=.+.-.. +.|++.- .+.-|-.+||+.+ ...+ .+.+.|++++.+|-+= .|..|..+++|.+||
T Consensus 250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~--a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC--AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc--eEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 3556665554444 4555544 6778889999885 3333 3778899999997654 355566999999999
Q ss_pred cC----CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 348 FR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 348 ~~----Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+| |--|++.|||...+ .-+-+-|-|..-.|+|+..|- --.||.+..|.++
T Consensus 328 ~R~~K~~~~V~qYeGHvN~~---a~l~~~v~~eeg~I~s~GdDc----------ytRiWsl~~ghLl 381 (425)
T KOG2695|consen 328 LRATKCKKSVMQYEGHVNLS---AYLPAHVKEEEGSIFSVGDDC----------YTRIWSLDSGHLL 381 (425)
T ss_pred ehhhhcccceeeeecccccc---cccccccccccceEEEccCee----------EEEEEecccCcee
Confidence 99 44599999999842 234466888999999987775 8899999999875
No 225
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.11 E-value=0.25 Score=49.72 Aligned_cols=207 Identities=15% Similarity=0.123 Sum_probs=117.0
Q ss_pred eEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc
Q 015220 156 VYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN 235 (411)
Q Consensus 156 v~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~ 235 (411)
=.+.|+|++..++.. +- . ...| +=-.|.| -+++..|++.-..++++||||-. +.||.|+...
T Consensus 23 Rsa~Ddf~si~~kcq----Vp-k---D~~P--QWRkl~W-------SpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 23 RSAKDDFSSIIGKCQ----VP-K---DPNP--QWRKLAW-------SPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred EeccCCchheeEEEe----cC-C---CCCc--hheEEEE-------CCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 346799998865543 10 1 1112 1123444 38999999999999999999998 8888888431
Q ss_pred ----eeEEEEeCCEEEEE--------------EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc-eeEEe
Q 015220 236 ----VQEIKISPGIMLLI--------------FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE-KLLVK 296 (411)
Q Consensus 236 ----VqeIkISdG~~Lai--------------~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e-kllIK 296 (411)
...-.|++-+|+-. +...=....|-+-..+..+..++|.+..+...-|....-+++ .||+-
T Consensus 85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV 164 (282)
T ss_pred ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence 11112222222222 222223333333445677888899988888888888877777 44554
Q ss_pred ecCce------------eeEEEcccceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecCCceeeeeccccccCC
Q 015220 297 QENEN------------LQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP 364 (411)
Q Consensus 297 Qe~~~------------LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~ 364 (411)
-+.++ |-.|=+.++.++..+-+.+.. .+ +....+--+|.+- -++-|..+ .-.+
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~--~~----------~~~~~~~~~~~~~--~~~~fs~~-~~~~ 229 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED--DI----------TASSKRRGLLRIP--SFKFFSRQ-GQEQ 229 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCCCcEEEccccCc--cc----------cccccccceeecc--ceeeeecc-ccCC
Confidence 43332 456666666666532222111 00 0011111222211 11112211 1112
Q ss_pred CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 365 ~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+ .+-++-|||||.+|++-..+- +|-+|+|=+
T Consensus 230 d-~i~kmSlSPdg~~La~ih~sG----------~lsLW~iPs 260 (282)
T PF15492_consen 230 D-GIFKMSLSPDGSLLACIHFSG----------SLSLWEIPS 260 (282)
T ss_pred C-ceEEEEECCCCCEEEEEEcCC----------eEEEEecCc
Confidence 2 456788999999999998884 999999854
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=96.07 E-value=0.0033 Score=70.32 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=80.8
Q ss_pred eeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCce--eeEEEcccceEEEeeccccCCCceEEEEeecee
Q 015220 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (411)
Q Consensus 257 ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~--LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sql 334 (411)
.=+|||+-+|+.++.+ .=||.-+|-=+++.-++++|+..+.- |++|=|.++++.. -+++|.-|+.+++.+--
T Consensus 212 ~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~ 285 (1113)
T KOG0644|consen 212 RLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR 285 (1113)
T ss_pred ceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc
Confidence 3489999999999999 88999999999999999999998888 9999999999998 68999999999998854
Q ss_pred EEEEecCeEEEEecCCc
Q 015220 335 FLTFRNRTVAVWNFRGE 351 (411)
Q Consensus 335 FlSfsd~tI~iWn~~Ge 351 (411)
=-|.-|+|+++||-+-+
T Consensus 286 ~sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 286 ASSSDDGTCRIWDARLE 302 (1113)
T ss_pred ccCCCCCceEecccccc
Confidence 46778999999999833
No 227
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.47 Score=48.79 Aligned_cols=241 Identities=16% Similarity=0.205 Sum_probs=138.0
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEE------eEec-CCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCC
Q 015220 131 LNVTADEVIRSLFYNKNNDSLITVS------VYAS-DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV 203 (411)
Q Consensus 131 lN~s~~evIrsifyN~~n~slI~vS------v~~s-d~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~ 203 (411)
|-..++.+|+.+-|+..-+-+-+-| +|.+ ++=+.-.|-+- -|.+ . ..+ =...-.||.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----Wrah---~-~Si-~rV~WAhPEf------ 72 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----WRAH---D-GSI-WRVVWAHPEF------ 72 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee----EEec---C-CcE-EEEEecCccc------
Confidence 4456678999999999888877633 3431 11111111110 0000 0 000 1244567877
Q ss_pred CCeEEEeecCCCeEEEEEee---------CceEEEEeccC--ceeEEEEeCCEEEEEEecCCCceeeEEEEecCC-----
Q 015220 204 NGKVLTYSAQDSIYKVFDLK---------NYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG----- 267 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~---------~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG----- 267 (411)
|+|++.++-|.+.+||-=+ .....-+|.|. .|.+|+++|-++=+.+-....--.+.|+...+=
T Consensus 73 -GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 73 -GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred -cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 9999999999999999762 23456778877 999999996544333333444444444433322
Q ss_pred -cEEeEee---eccccCCcceee-----eeecceeEEeecCc------eeeEEEcccce-EEEeeccccCCCceEEEEee
Q 015220 268 -TVLKSFN---HLLHRNKKVDFI-----EQFNEKLLVKQENE------NLQILDVRNFE-LTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 268 -~~L~t~~---~LL~h~K~I~FL-----E~~~ekllIKQe~~------~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~ 331 (411)
++++++. ..++..+...|- -.+.+.++.-.-++ +.+||--..+- .+..-+++=+|+.-+.-+.-
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 2222211 111222222111 11222233333333 77888766544 55556677789988877764
Q ss_pred c-------eeEEEE-ecCeEEEEecCC---------------------ceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 332 N-------QLFLTF-RNRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 332 s-------qlFlSf-sd~tI~iWn~~G---------------------el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
. +++.+. .|| |+||+..+ +++..|.+|.. .+=.+--.=.|-+|.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-----~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-----EVWRVRWNMTGTILSS 305 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-----ceEEEEEeeeeeEEee
Confidence 3 777787 666 99999985 24556777764 5555555556777776
Q ss_pred EecCCCCCccccCCceEEEee
Q 015220 383 YCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~ 403 (411)
-..| |.+++|-
T Consensus 306 tGdD----------G~VRLWk 316 (361)
T KOG2445|consen 306 TGDD----------GCVRLWK 316 (361)
T ss_pred cCCC----------ceeeehh
Confidence 6555 4888773
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.62 E-value=0.4 Score=49.25 Aligned_cols=178 Identities=12% Similarity=0.142 Sum_probs=129.1
Q ss_pred cCCCeEEEEEeeCceEEEEec--cC--ceeEEEEeCCEEEEEEecCC---CceeeEEEEecCCcEEeEeeeccccCCcce
Q 015220 212 AQDSIYKVFDLKNYTMLYSIS--DK--NVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs--~~--~VqeIkISdG~~Lai~q~t~---~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~ 284 (411)
+.+.=|||++..+++...+-- +. .+.|+=..-..+.+++-+.+ +..-+.|||=+-.+++.++. -++||-
T Consensus 23 a~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~----f~~~I~ 98 (346)
T KOG2111|consen 23 ATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS----FNSEIK 98 (346)
T ss_pred EecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE----ecccee
Confidence 556779999999988753333 22 34444444666677765554 44558899988888888855 468999
Q ss_pred eeeeecceeEEeecCceeeEEEccc-ceEEEeeccccCCCceEEEEeec--eeEEEE---ecCeEEEEecCCcee---ee
Q 015220 285 FIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYEN--QLFLTF---RNRTVAVWNFRGELV---TS 355 (411)
Q Consensus 285 FLE~~~ekllIKQe~~~LkI~dL~t-~e~~~v~~T~f~hpsAfifLy~s--qlFlSf---sd~tI~iWn~~Gel~---~s 355 (411)
-+-+.++.+.+-=+ ++|.+|...+ =+...+-.|.- .|...-++-.. .-+|.| .-|.|.|=+|.-.-. -.
T Consensus 99 ~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~ 176 (346)
T KOG2111|consen 99 AVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSI 176 (346)
T ss_pred eEEEcCCeEEEEec-CeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceE
Confidence 99999998876655 5899999884 34444444553 57774444433 556666 778999999984433 57
Q ss_pred eccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCce-EEEeeecceeee
Q 015220 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGK-LFVSLLMFVTCK 410 (411)
Q Consensus 356 ~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gt-I~i~~i~tGk~~ 410 (411)
.+-|.. .+.-++++-||-++.++|.-- | |.|||-.+|+.+
T Consensus 177 I~AH~s-----~Iacv~Ln~~Gt~vATaStkG----------TLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 177 INAHDS-----DIACVALNLQGTLVATASTKG----------TLIRIFDTEDGTLL 217 (346)
T ss_pred EEcccC-----ceeEEEEcCCccEEEEeccCc----------EEEEEEEcCCCcEe
Confidence 788998 999999999999999998763 5 899999999876
No 229
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.51 E-value=0.099 Score=57.80 Aligned_cols=135 Identities=14% Similarity=0.149 Sum_probs=94.8
Q ss_pred eeeEEEEec-CCcEEeEeeeccccCCcc---eeeeeecceeEEeecCceeeEEEcccceEEEeeccc--cCCCceE-EEE
Q 015220 257 VPLKILSIE-DGTVLKSFNHLLHRNKKV---DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE--FMTPSAF-IFL 329 (411)
Q Consensus 257 ipiKIl~I~-tG~~L~t~~~LL~h~K~I---~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~--f~hpsAf-ifL 329 (411)
.-+-|+-|. -|+..++..+|-+|.-.| .|.--..+-|--.+.+.+.|||-|-.|-...+++++ +++..-. -+|
T Consensus 55 ~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECL 134 (1012)
T ss_pred ceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEe
Confidence 344444444 356666666666665443 444433344456789999999999876655554432 1111111 111
Q ss_pred e---e-ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee
Q 015220 330 Y---E-NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL 404 (411)
Q Consensus 330 y---~-sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i 404 (411)
- + -.|+.+..-+++.|||.. +.....+.+|-- .+.+.--|+||.++...|||+ .|.|+|-
T Consensus 135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d-----~vQSa~WseDG~llatscKdk----------qirifDP 199 (1012)
T KOG1445|consen 135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGHTD-----KVQSADWSEDGKLLATSCKDK----------QIRIFDP 199 (1012)
T ss_pred ecccCcCceEEeccCceEEEEEcccCceeecccCCch-----hhhccccccCCceEeeecCCc----------ceEEeCC
Confidence 1 1 288999999999999999 999999999998 899999999999999999999 8888886
Q ss_pred cc
Q 015220 405 MF 406 (411)
Q Consensus 405 ~t 406 (411)
.+
T Consensus 200 Ra 201 (1012)
T KOG1445|consen 200 RA 201 (1012)
T ss_pred cc
Confidence 54
No 230
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.51 E-value=3 Score=41.64 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=119.4
Q ss_pred eEEeeCCCCeEEEeecCCC---------eEEEEEeeCc------eEEEEeccCc--eeEEEEe-CCEEEEEEecCCCc-e
Q 015220 197 FVEFDDVNGKVLTYSAQDS---------IYKVFDLKNY------TMLYSISDKN--VQEIKIS-PGIMLLIFTKASGH-V 257 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds---------~ykVWdL~~Y------s~iysLs~~~--VqeIkIS-dG~~Lai~q~t~~~-i 257 (411)
+++|-+ +|+.+.|..-+. -++||-.+=. .+||+-.++. ...+..| ||.+|++....+.. .
T Consensus 174 ~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECT-TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEE
T ss_pred eEEEeC-CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCC
Confidence 378865 666666665433 5666665532 2788888774 5788888 99999998888877 9
Q ss_pred eeEEEEecCC-cEEeEeeeccccC-CcceeeeeecceeEEee----cCceeeEEEcccceE---E-EeeccccCCCceEE
Q 015220 258 PLKILSIEDG-TVLKSFNHLLHRN-KKVDFIEQFNEKLLVKQ----ENENLQILDVRNFEL---T-EVSRTEFMTPSAFI 327 (411)
Q Consensus 258 piKIl~I~tG-~~L~t~~~LL~h~-K~I~FLE~~~ekllIKQ----e~~~LkI~dL~t~e~---~-~v~~T~f~hpsAfi 327 (411)
.+-+++++++ .....+..+..+. .-.++++-.++.++|.. .+.+|--.|+.+.+. . .+........-.-+
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~ 332 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV 332 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE
Confidence 9999999987 1111222244444 44478889999998877 446777778888662 2 22222111122222
Q ss_pred EEeeceeEEEE-ecC--eEEEEecC-CceeeeeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEe
Q 015220 328 FLYENQLFLTF-RNR--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 328 fLy~sqlFlSf-sd~--tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
.+....|+++. .++ .|.+|++. |.......-=.. ..+..+--.+++ ++.|+++.-. .-++|--+
T Consensus 333 ~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss~~-------~P~~~y~~ 401 (414)
T PF02897_consen 333 SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSSFT-------TPPTVYRY 401 (414)
T ss_dssp EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEETT-------EEEEEEEE
T ss_pred EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeCCC-------CCCEEEEE
Confidence 33344777777 443 78899999 776554332111 112222222333 4556666553 22699999
Q ss_pred eecceeee
Q 015220 403 LLMFVTCK 410 (411)
Q Consensus 403 ~i~tGk~~ 410 (411)
|+.|||+.
T Consensus 402 d~~t~~~~ 409 (414)
T PF02897_consen 402 DLATGELT 409 (414)
T ss_dssp ETTTTCEE
T ss_pred ECCCCCEE
Confidence 99999874
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=95.50 E-value=0.071 Score=60.64 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=109.8
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
+.-|+++- .+.|+ ++...|.|.|+.....|..+..-+..++..+-|+..+.. -..||.-.-+++..
T Consensus 10 l~~~~~~~-----~~lla--g~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~-------~~~v~~~~~~~v~~ 75 (967)
T KOG0974|consen 10 LNLPQLVS-----DYLLA--GSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLS-------GKIVTCAKSDEVYV 75 (967)
T ss_pred ccchhhcc-----ceeee--cCCCceEEeeCCchhHhhhhhhhcccccccccccceecc-------ceEEEEEeecceee
Confidence 34466654 56666 677788999988888777666444444442222221111 01112222122211
Q ss_pred EeeeccccCCcceeeeee------------cceeEEeecCceeeEEEcccceEEE-eeccccC--CCceEEEEeeceeEE
Q 015220 272 SFNHLLHRNKKVDFIEQF------------NEKLLVKQENENLQILDVRNFELTE-VSRTEFM--TPSAFIFLYENQLFL 336 (411)
Q Consensus 272 t~~~LL~h~K~I~FLE~~------------~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~--hpsAfifLy~sqlFl 336 (411)
. ....++++.+ +-++.+-...+.+-|||...+-... +.-+++- -+.+.+-...+++++
T Consensus 76 ~-------~~~~~~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 76 K-------EASNQIIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred c-------chhhhhhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEE
Confidence 1 0111222222 2344677788888999888754432 1112210 111222233447776
Q ss_pred EE--ecCeEEEEecCCceee-eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 337 TF--RNRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 337 Sf--sd~tI~iWn~~Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.. .-+.|-+|.+.++=.- .+.||.+ .+=.+--|.||..|+|.|.|+ ||.||+|.|++..
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG-----~iF~i~~s~dg~~i~s~SdDR----------siRlW~i~s~~~~ 210 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEG-----SIFSIVTSLDGRYIASVSDDR----------SIRLWPIDSREVL 210 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCC-----ceEEEEEccCCcEEEEEecCc----------ceeeeeccccccc
Confidence 66 7889999999977444 5999999 777778889999999999999 9999999999854
No 232
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=95.49 E-value=0.015 Score=65.39 Aligned_cols=101 Identities=17% Similarity=0.313 Sum_probs=81.4
Q ss_pred EeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeee
Q 015220 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (411)
Q Consensus 199 EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~ 275 (411)
-||- .|+-++-+.+|--.|||.+.|-.++-++.++ ++.+..+| +..|+|-... ---|.+|.++||.++.-
T Consensus 197 ~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~---D~vIrvWrl~~~~pvsv--- 269 (1113)
T KOG0644|consen 197 IFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN---DKVIRVWRLPDGAPVSV--- 269 (1113)
T ss_pred eecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc---CceEEEEecCCCchHHH---
Confidence 3555 4566666788888999999999999999988 99999999 8877665432 33489999999999987
Q ss_pred ccccCCcceeeeeecceeEEeecCceeeEEEcc
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~ 308 (411)
|.||.--|-.|+-++=- --|.+..+.|||-+
T Consensus 270 LrghtgavtaiafsP~~--sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 270 LRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR 300 (1113)
T ss_pred HhccccceeeeccCccc--cCCCCCceEecccc
Confidence 88999888877766644 44788999999998
No 233
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.43 E-value=0.16 Score=53.37 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=83.9
Q ss_pred EEee--cCceeeEEEcccce------EEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC--------C---
Q 015220 294 LVKQ--ENENLQILDVRNFE------LTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR--------G--- 350 (411)
Q Consensus 294 lIKQ--e~~~LkI~dL~t~e------~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~--------G--- 350 (411)
.++. ++++|+||=+.+++ ..+--.++-.|-.|+..+-.+ +++.|+ -+++|-+|... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 4444 78999999998844 555566788899999988877 799999 67799999987 3
Q ss_pred ---c---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ---E---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 ---e---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
| ....+-+|.- .+--++=++|+.+++|+|-|. ++-+||.-+|+++
T Consensus 108 ~~ke~w~v~k~lr~h~~-----diydL~Ws~d~~~l~s~s~dn----------s~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRD-----DIYDLAWSPDSNFLVSGSVDN----------SVRLWDVHAGQLL 158 (434)
T ss_pred hCccceEEEEEeccccc-----chhhhhccCCCceeeeeeccc----------eEEEEEeccceeE
Confidence 1 2337777887 788888999999999999999 9999999999875
No 234
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.34 E-value=0.048 Score=32.50 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=33.3
Q ss_pred CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+.+..++..|.. .++.+...+++.++++++.|. +|.+||
T Consensus 2 ~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~d~----------~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-----PVTSVAFSPDGKYLASASDDG----------TIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-----ceeEEEECCCCCEEEEecCCC----------eEEEcC
Confidence 456677878877 788999999999999999997 899986
No 235
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=95.34 E-value=0.035 Score=57.12 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=51.0
Q ss_pred ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcC--CCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 332 NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 332 sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~--Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
+-+.++.|+++|++||.. |.++..|.+|.. -+|-+.+.. -...++|+|.|- +|++|||.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG----------~Vr~wD~Rs 103 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDG----------TVRLWDIRS 103 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCC----------eEEEEEeec
Confidence 344555699999999999 999999999998 788877666 578999999985 999999976
No 236
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.29 E-value=2.8 Score=42.75 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=124.9
Q ss_pred cccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccC
Q 015220 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (411)
Q Consensus 114 sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~ 193 (411)
.+..-||-|.=|.+.-.+++...++.+.+.= . ++ -|+..+.+- - ..|+.||.+|.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~-------------~g-RHFyGHg~f---s-----~dG~~LytTEn-- 70 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWA-P-------------PG-RHFYGHGVF---S-----PDGRLLYTTEN-- 70 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-C-------------CC-CEEecCEEE---c-----CCCCEEEEecc--
Confidence 4555667777777777777777666543311 1 11 222222221 0 14566999987
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEee-CceEEEEeccC--ceeEEEEe-CCEEEEEEec---CC------------
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDK--NVQEIKIS-PGIMLLIFTK---AS------------ 254 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~-~Ys~iysLs~~--~VqeIkIS-dG~~Lai~q~---t~------------ 254 (411)
||+.--|+|. |||.. +|..+-+.+.. .=.|+.+. ||..|++.+. ||
T Consensus 71 -----d~~~g~G~Ig----------Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 71 -----DYETGRGVIG----------VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred -----ccCCCcEEEE----------EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 6666555555 56666 78888888866 55788888 8867777653 44
Q ss_pred CceeeEEEEecCCcEEeEeeec-cccCCcceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec
Q 015220 255 GHVPLKILSIEDGTVLKSFNHL-LHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~L-L~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s 332 (411)
-..+|..+|..||+++-...+. =.|+.-|.=|.+..++. ++.+--. |+... .|
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q---------g~~~~-------~~--------- 190 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ---------GDPGD-------AP--------- 190 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC---------CCCCc-------cC---------
Confidence 1335677888899988864420 23445566666666655 2222100 01000 00
Q ss_pred eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 333 QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-|.... .+..++.-...-+..+.|.+ ++-+|++++||++|..-|. +-|.+-+||..||+++
T Consensus 191 PLva~~~~g~~~~~~~~p~~~~~~l~~--------Y~gSIa~~~~g~~ia~tsP---------rGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 191 PLVALHRRGGALRLLPAPEEQWRRLNG--------YIGSIAADRDGRLIAVTSP---------RGGRVAVWDAATGRLL 252 (305)
T ss_pred CeEEEEcCCCcceeccCChHHHHhhCC--------ceEEEEEeCCCCEEEEECC---------CCCEEEEEECCCCCEe
Confidence 223333 22223333333333445544 4559999999998866553 3479999999999886
No 237
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.02 E-value=2 Score=46.84 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=107.7
Q ss_pred EEeecCCCeEEEE-Ee-----eCceEEEEeccC-ceeEEEEeCCEE-EEEEecCCCceeeE-EEEecCCcEEeEeeeccc
Q 015220 208 LTYSAQDSIYKVF-DL-----KNYTMLYSISDK-NVQEIKISPGIM-LLIFTKASGHVPLK-ILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 208 Lt~~~~ds~ykVW-dL-----~~Ys~iysLs~~-~VqeIkISdG~~-Lai~q~t~~~ipiK-Il~I~tG~~L~t~~~LL~ 278 (411)
|.-+..+.-.-|| .. .+.+++-+=.|. |+.=.+++.+.+ ++.+-.|.. -|+- -+++.....+++..+-+.
T Consensus 151 l~~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~-dPl~~~Fs~~~~~qi~tVE~s~s 229 (545)
T PF11768_consen 151 LSVNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTEN-DPLDVEFSLNQPYQIHTVEQSIS 229 (545)
T ss_pred EeeccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecC-CcEEEEccCCCCcEEEEEEEecC
Confidence 3334444455555 44 334443222222 666666664433 333333322 2222 244555555555444333
Q ss_pred cCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCceee
Q 015220 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGELVT 354 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Gel~~ 354 (411)
+++++- -.--||++..++..+|+-|..-.|+.+++.+-+ +.|+.+ .|++|.+||.+-. ++
T Consensus 230 ~~g~~~---------------~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t 293 (545)
T PF11768_consen 230 VKGEPS---------------ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VT 293 (545)
T ss_pred CCCCce---------------eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-ee
Confidence 333321 234688888888999999999999999999977 667777 9999999999833 55
Q ss_pred eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
++..+.. -.+-++..|||.+++.|+.- |-|.+||+-.+-
T Consensus 294 ~~~ka~~-----~P~~iaWHp~gai~~V~s~q----------GelQ~FD~ALsp 332 (545)
T PF11768_consen 294 LLAKAEF-----IPTLIAWHPDGAIFVVGSEQ----------GELQCFDMALSP 332 (545)
T ss_pred eeeeecc-----cceEEEEcCCCcEEEEEcCC----------ceEEEEEeecCc
Confidence 6666544 78889999999999999766 489999986543
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.91 E-value=0.63 Score=51.10 Aligned_cols=189 Identities=16% Similarity=0.160 Sum_probs=117.6
Q ss_pred CCCeEEEeecC-CCeEEEEEeeCceEE--EEeccCceeEEEEeCCEEEEEEecCCC------------------------
Q 015220 203 VNGKVLTYSAQ-DSIYKVFDLKNYTML--YSISDKNVQEIKISPGIMLLIFTKASG------------------------ 255 (411)
Q Consensus 203 ~NGkiLt~~~~-ds~ykVWdL~~Ys~i--ysLs~~~VqeIkISdG~~Lai~q~t~~------------------------ 255 (411)
++|+-+.+.+. -=-+||||+.+-++= +-+..+.|.=+-+||.--=++..++.-
T Consensus 61 ~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~ 140 (703)
T KOG2321|consen 61 PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMK 140 (703)
T ss_pred CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcccc
Confidence 45554443332 335689999997754 445566777667774332222222221
Q ss_pred -------------ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeec--CceeeEEEcccceEEE---eec
Q 015220 256 -------------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTE---VSR 317 (411)
Q Consensus 256 -------------~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~---v~~ 317 (411)
-..+-=++|+.|.-|.+|. -...+++.+.+.++..||+-+ +.....||-++.++.- ++.
T Consensus 141 y~~~scDly~~gsg~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 141 YHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccCCCccEEEeecCcceEEEEccccccccccc---cccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 1122335666666666633 234789999999999999985 5899999999987654 333
Q ss_pred cccCCCce-----EEEEeece--e-EEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEE--cCCCCEEEEEec
Q 015220 318 TEFMTPSA-----FIFLYENQ--L-FLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCK 385 (411)
Q Consensus 318 T~f~hpsA-----fifLy~sq--l-FlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~I--s~Dqd~iiS~~~ 385 (411)
+.-.||.. +.++..+. | +..+ ++|.+-|||++ -.++. -.+|..-- -++.+.- +-+|+.++|.-+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~---pi~~l~~~~~~~q~~v~S~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYEL---PIKKLDWQDTDQQNKVVSMDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCcc---ceeeecccccCCCceEEecch
Confidence 33344444 66666663 4 5555 99999999999 44433 23554411 2333332 235677877655
Q ss_pred CCCCCccccCCceEEEeeecceee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
. .++|||-.|||-
T Consensus 294 ~-----------~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 294 R-----------ILKIWDECTGKP 306 (703)
T ss_pred H-----------HhhhcccccCCc
Confidence 5 799999999984
No 239
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.81 E-value=0.094 Score=54.11 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=75.0
Q ss_pred cCCcceeee-----eecceeEEeecCceeeEEEcccc----e-----EEEeeccccCCCceEEEEe-----------ece
Q 015220 279 RNKKVDFIE-----QFNEKLLVKQENENLQILDVRNF----E-----LTEVSRTEFMTPSAFIFLY-----------ENQ 333 (411)
Q Consensus 279 h~K~I~FLE-----~~~ekllIKQe~~~LkI~dL~t~----e-----~~~v~~T~f~hpsAfifLy-----------~sq 333 (411)
.+||.+|+. .-++.+|.-++++-|.+|||-.. . ..++-.++-+..-..+..| .+.
T Consensus 45 tt~p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 45 TTKPLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cCCchhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 344555543 34567788899999999998541 1 1110001100001111111 236
Q ss_pred eEEEE-ecCeEEEEecC-Cceeeeec--cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeee-cce
Q 015220 334 LFLTF-RNRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLL-MFV 407 (411)
Q Consensus 334 lFlSf-sd~tI~iWn~~-Gel~~s~e--~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i-~tG 407 (411)
+|++- ++.-|.+||.- |+|-+|+. ||+- --...-++..||||.-|+.|.|. +|+++|+ .+|
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~d--e~taAhsL~Fs~DGeqlfaGykr-----------cirvFdt~RpG 190 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQD--EYTAAHSLQFSPDGEQLFAGYKR-----------CIRVFDTSRPG 190 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHH--hhhhheeEEecCCCCeEeecccc-----------eEEEeeccCCC
Confidence 67777 99999999999 99999775 4443 22334578899999999999998 8999999 555
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.63 E-value=1 Score=48.90 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=109.5
Q ss_pred CCCeEEEEEeeC-ceEEEEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeee--e
Q 015220 213 QDSIYKVFDLKN-YTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--Q 288 (411)
Q Consensus 213 ~ds~ykVWdL~~-Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE--~ 288 (411)
..++|.+|.|.- |+++..++-++++. .| |-.||+.+-+.. .+-+++.--|++...+.-- .|--+|+.+- +
T Consensus 39 ~t~~~~~w~L~~~~s~~k~~~~~~~~~--~s~~t~~lvlgt~~g---~v~~ys~~~g~it~~~st~-~h~~~v~~~~~~~ 112 (541)
T KOG4547|consen 39 GTCTYTKWGLSADYSPMKWLSLEKAKK--ASLDTSMLVLGTPQG---SVLLYSVAGGEITAKLSTD-KHYGNVNEILDAQ 112 (541)
T ss_pred CcceeEEEEEEeccchHHHHhHHHHhh--ccCCceEEEeecCCc---cEEEEEecCCeEEEEEecC-CCCCcceeeeccc
Confidence 378999999875 88888887665543 34 666666665544 3556777788888874411 3334444332 2
Q ss_pred ecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeecee--EEEEecCeEEEEecC-CceeeeeccccccCCC
Q 015220 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL--FLTFRNRTVAVWNFR-GELVTSFEDHLLWHPD 365 (411)
Q Consensus 289 ~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sql--FlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~ 365 (411)
--..++=-..+-++-.|++.....++. -+..+.-+.-+-+++. -|..-+++|.+||.. +|++.+|+||-.
T Consensus 113 ~~~ciyS~~ad~~v~~~~~~~~~~~~~---~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s---- 185 (541)
T KOG4547|consen 113 RLGCIYSVGADLKVVYILEKEKVIIRI---WKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGS---- 185 (541)
T ss_pred ccCceEecCCceeEEEEecccceeeee---eccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCc----
Confidence 222333333666777899999999983 4445566666666633 333357899999999 999999999999
Q ss_pred CccceEEEcCC-----CCEEEEEecCC
Q 015220 366 CNTNNIYITSD-----QDLIISYCKAD 387 (411)
Q Consensus 366 c~~n~i~Is~D-----qd~iiS~~~d~ 387 (411)
.++++..+.+ |+...|.-+..
T Consensus 186 -~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 186 -PVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred -ceEEEEEEEeccccccceeeeccccc
Confidence 9999988888 77766665543
No 241
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=94.50 E-value=0.15 Score=56.42 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=122.1
Q ss_pred CeEEEeecCCCeEEEEEeeC--ceEEEEeccC------------ceeEEEEeCC-EEE-EEEecCC---------Cceee
Q 015220 205 GKVLTYSAQDSIYKVFDLKN--YTMLYSISDK------------NVQEIKISPG-IML-LIFTKAS---------GHVPL 259 (411)
Q Consensus 205 GkiLt~~~~ds~ykVWdL~~--Ys~iysLs~~------------~VqeIkISdG-~~L-ai~q~t~---------~~ipi 259 (411)
.-..+++++++.+|||+.-- ++.++-+++. +|....+|+- ++. ..-...+ ---|.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 45678899999999998743 4455555541 5555556622 221 1211111 22233
Q ss_pred EEEEecCCcEEe------EeeeccccCCcceeeeeecceeEEee-------cCceeeEEEcccceEEEeeccccCCCceE
Q 015220 260 KILSIEDGTVLK------SFNHLLHRNKKVDFIEQFNEKLLVKQ-------ENENLQILDVRNFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 260 KIl~I~tG~~L~------t~~~LL~h~K~I~FLE~~~ekllIKQ-------e~~~LkI~dL~t~e~~~v~~T~f~hpsAf 326 (411)
-+..=.+...|- +..-|.||--+|..+.+++.+=||++ +..-|.+||..+=.... .+-+|.-.+
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTV 575 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTV 575 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEE
Confidence 333222221111 11137899999999999999999998 45569999988844444 455699888
Q ss_pred EEEeec---eeEEEE-ecCeEEEEecCCce-----eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 327 IFLYEN---QLFLTF-RNRTVAVWNFRGEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 327 ifLy~s---qlFlSf-sd~tI~iWn~~Gel-----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.-|+.| +.+||. +|+|+.+|+-.-++ ......|.- -+=.---+||+...+.+|-||
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR-----IIWdcsW~pde~~FaTaSRDK---------- 640 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR-----IIWDCSWSPDEKYFATASRDK---------- 640 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccce-----EEEEcccCcccceeEEecCCc----------
Confidence 888888 778888 99999999987322 223566655 112222489999999999999
Q ss_pred eEEEeeecce
Q 015220 398 KLFVSLLMFV 407 (411)
Q Consensus 398 tI~i~~i~tG 407 (411)
++++|-+..+
T Consensus 641 ~VkVW~~~~~ 650 (764)
T KOG1063|consen 641 KVKVWEEPDL 650 (764)
T ss_pred eEEEEeccCc
Confidence 9999988776
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.50 E-value=0.088 Score=56.17 Aligned_cols=206 Identities=20% Similarity=0.239 Sum_probs=122.4
Q ss_pred ehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecC-------CCeEEEEEeEecCCCceeeeEeeehhhhhhCCC
Q 015220 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-------NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (411)
Q Consensus 108 i~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~-------n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~ 180 (411)
+++--..|--||||-.|++++|+||.. |-||.+=|=.+ -..... +|..+. .-|+|--.-++ -.++
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LHneq~~AVAQK~y~y--vYD~~G-tElHClk~~~~---v~rL 215 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLHNEQFFAVAQKKYVY--VYDNNG-TELHCLKRHIR---VARL 215 (545)
T ss_pred EEecCCccceeeeecccceeeeeeehh--hhhhhhhhhcchHHHHhhhhceEE--EecCCC-cEEeehhhcCc---hhhh
Confidence 445567789999999999999999984 66666533221 122333 677777 67777322111 0000
Q ss_pred CCCCcceeecccCCCCeEEeeCCC-CeEEEeecC-CCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCcee
Q 015220 181 DAGFALFESESLKWPGFVEFDDVN-GKVLTYSAQ-DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVP 258 (411)
Q Consensus 181 ~~~~~LF~~~~l~~PgfvEFDd~N-GkiLt~~~~-ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ip 258 (411)
+==-..|-=.....-||.-|-|+. |+++..... -+...|-..++|.-+--+ -|..--
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~---------------------GhsnGt 274 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL---------------------GHSNGT 274 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE---------------------cCCCce
Confidence 000002222334445555554443 333332221 222222222222221111 123334
Q ss_pred eEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--ee
Q 015220 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QL 334 (411)
Q Consensus 259 iKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--ql 334 (411)
+.+|+=..-++|+. +|-|..+|..|++.+.+.+.+- -++++|||||++-.-.. |.+ +|--.--|..| .+
T Consensus 275 VSlWSP~skePLvK---iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~-tp~~a~~ls~Sqkgl 347 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVK---ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYR-TPHPASNLSLSQKGL 347 (545)
T ss_pred EEecCCCCcchHHH---HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eee-cCCCccccccccccc
Confidence 68899999999998 9999999999999999986665 57899999999977333 554 24444556666 45
Q ss_pred EEEEecCeEEEEecC
Q 015220 335 FLTFRNRTVAVWNFR 349 (411)
Q Consensus 335 FlSfsd~tI~iWn~~ 349 (411)
++...-.-+.||.=.
T Consensus 348 LA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 348 LALSYGDHVQIWKDA 362 (545)
T ss_pred eeeecCCeeeeehhh
Confidence 666677789999633
No 243
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.43 E-value=0.21 Score=55.67 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=56.7
Q ss_pred ceeeeeeccee-EEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC--Cce
Q 015220 283 VDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR--GEL 352 (411)
Q Consensus 283 I~FLE~~~ekl-lIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~--Gel 352 (411)
|+=+.--||+- ||--.++++-|||...|.... |+.+|+..+.+++++ +.|.|+ +|+.|-+|+.. |-|
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 33345555553 777788999999999999998 999999999999999 889999 99999999988 544
No 244
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.15 E-value=0.087 Score=54.85 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=95.8
Q ss_pred ceeEEEEeCCEE-EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--EEeecCceeeEEEcccce
Q 015220 235 NVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--LVKQENENLQILDVRNFE 311 (411)
Q Consensus 235 ~VqeIkISdG~~-Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--lIKQe~~~LkI~dL~t~e 311 (411)
+...++.|+-+- ++-+..+.. -.|+|+-..+-.-.+.. -|++=.-.-+ --+++.+.+.||+...+.
T Consensus 75 ~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~ai---------~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 75 RLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVPKRPTAI---------SFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred eEEEEEeCCCceEEEEEecCCC--cceeeeEeecccCccee---------eeeeccceEEEEeecCCceeeeeecccccC
Confidence 555666663332 333333222 55666655554444332 2222222212 235678888899888755
Q ss_pred EEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCCc-eee-eeccccccCCCCccceEEEcCCCCEEEEEec
Q 015220 312 LTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRGE-LVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (411)
Q Consensus 312 ~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~Ge-l~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~ 385 (411)
.. ..-+|=+-..-|+.+ +..+|- +|.+|||=.+.+- -+- =+-||.- .+.++.+.+++ +|+|++-
T Consensus 144 ~~----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-----FVS~isl~~~~-~LlS~sG 213 (390)
T KOG3914|consen 144 CE----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-----FVSTISLTDNY-LLLSGSG 213 (390)
T ss_pred cc----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-----heeeeeeccCc-eeeecCC
Confidence 55 345688888888887 667777 9999999887744 222 3457988 88999998766 4999999
Q ss_pred CCCCCccccCCceEEEeeecceeee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|+ |+.+||+.+||++
T Consensus 214 D~----------tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 214 DK----------TLRLWDITSGKLL 228 (390)
T ss_pred CC----------cEEEEecccCCcc
Confidence 98 9999999999986
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.12 E-value=3.7 Score=44.87 Aligned_cols=182 Identities=14% Similarity=0.193 Sum_probs=117.6
Q ss_pred CCeEEEEEeeCceE-EEEeccCceeEEEEeCC---EEEEEEecCCCcee--eEEEEecCCcEEeEee-eccccCCcceee
Q 015220 214 DSIYKVFDLKNYTM-LYSISDKNVQEIKISPG---IMLLIFTKASGHVP--LKILSIEDGTVLKSFN-HLLHRNKKVDFI 286 (411)
Q Consensus 214 ds~ykVWdL~~Ys~-iysLs~~~VqeIkISdG---~~Lai~q~t~~~ip--iKIl~I~tG~~L~t~~-~LL~h~K~I~FL 286 (411)
.+...+|++.+.+- .-.|....|..+.+|+| .++|++-+...-.| ++||.+.-+....... -=+=..-.|++.
T Consensus 145 ~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~ 224 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMK 224 (566)
T ss_pred cceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEE
Confidence 67788999988763 36677779999999988 88999999986665 6778777222221100 000011233332
Q ss_pred ee--ecceeEEee-----------cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE---ecCeEEEEecCC
Q 015220 287 EQ--FNEKLLVKQ-----------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF---RNRTVAVWNFRG 350 (411)
Q Consensus 287 E~--~~ekllIKQ-----------e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf---sd~tI~iWn~~G 350 (411)
== -..=|+|+| +..+|-+++.. |+...|+=+.-+-=-.|.+...+.=|... +=-++.|+|++|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 11 111234554 45677777777 66666655533322333333333334433 778999999999
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+++-.|-.- --|++|-+|-|.+|+-+.=+. --|.|-+||..+=||+
T Consensus 304 ~~v~df~eg-------pRN~~~fnp~g~ii~lAGFGN-------L~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 304 KPVFDFPEG-------PRNTAFFNPHGNIILLAGFGN-------LPGDMEVWDVPNRKLI 349 (566)
T ss_pred CEeEeCCCC-------CccceEECCCCCEEEEeecCC-------CCCceEEEeccchhhc
Confidence 999877432 458999999999998766542 2399999999998876
No 246
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.10 E-value=6.2 Score=38.41 Aligned_cols=131 Identities=19% Similarity=0.231 Sum_probs=83.5
Q ss_pred CeEEEEEeeCceEEEEe--c-cCcee---EEEEeC-----CEEEEEEecCC------Cc-eeeEEEEecCC----cEEeE
Q 015220 215 SIYKVFDLKNYTMLYSI--S-DKNVQ---EIKISP-----GIMLLIFTKAS------GH-VPLKILSIEDG----TVLKS 272 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysL--s-~~~Vq---eIkISd-----G~~Lai~q~t~------~~-ipiKIl~I~tG----~~L~t 272 (411)
+++++.|-.+++.+.++ . +|.+. .+++.+ -.+++++..-. .+ --|.++++.++ ..++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 67888888888877444 3 33444 444443 58888876633 12 66889999995 22222
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccce-EEEeeccccCCCceEEEEeec-eeEEEE-ecCeEEEEecC
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYEN-QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e-~~~v~~T~f~hpsAfifLy~s-qlFlSf-sd~tI~iWn~~ 349 (411)
. +--..+.+|..|..++++ ++..-|++|.+|++...+ +..+ ..+..|.....+... ...+.+ .-+.+-++.++
T Consensus 82 i-~~~~~~g~V~ai~~~~~~-lv~~~g~~l~v~~l~~~~~l~~~--~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 I-HSTEVKGPVTAICSFNGR-LVVAVGNKLYVYDLDNSKTLLKK--AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp E-EEEEESS-EEEEEEETTE-EEEEETTEEEEEEEETTSSEEEE--EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred E-EEEeecCcceEhhhhCCE-EEEeecCEEEEEEccCcccchhh--heecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 1 123447889999999998 666667999999999999 5543 555566666666654 333333 55677777555
No 247
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=93.83 E-value=2.3 Score=43.75 Aligned_cols=175 Identities=15% Similarity=0.221 Sum_probs=110.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCce----EEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec---CCc
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE---DGT 268 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys----~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~---tG~ 268 (411)
+..++++-+-+..++=|-|-.|||+++.. .-+-|- |++|-+|+.+ +|.=++.+-.+.. .+++|||- -.+
T Consensus 156 FDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG--SvRmFDLR~leHST 233 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADG--SVRMFDLRSLEHST 233 (364)
T ss_pred cccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCC--cEEEEEecccccce
Confidence 45667777778888889999999999972 234444 4499999998 3332222222322 34555553 333
Q ss_pred EEeE-------eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEE
Q 015220 269 VLKS-------FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFL 336 (411)
Q Consensus 269 ~L~t-------~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFl 336 (411)
++.+ +--|--.+.+.++|+ ++++.+++++|+|++.-..-.. ++=+|..-+-.++-- .|--
T Consensus 234 IIYE~p~~~~pLlRLswnkqDpnymA------Tf~~dS~~V~iLDiR~P~tpva--~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 234 IIYEDPSPSTPLLRLSWNKQDPNYMA------TFAMDSNKVVILDIRVPCTPVA--RLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred EEecCCCCCCcceeeccCcCCchHHh------hhhcCCceEEEEEecCCCccee--hhhcCcccccceEecCCCCceeee
Confidence 3332 000222333444443 6788999999999998443331 777888888887733 4555
Q ss_pred EEecCeEEEEecCCceeeeeccc-cccCCCCccceEEEcCCC-CEEEE
Q 015220 337 TFRNRTVAVWNFRGELVTSFEDH-LLWHPDCNTNNIYITSDQ-DLIIS 382 (411)
Q Consensus 337 Sfsd~tI~iWn~~Gel~~s~e~H-~~~~~~c~~n~i~Is~Dq-d~iiS 382 (411)
.+-|-...+||++--+-.+.++- +.|+-.-++|+|.-++.| |-|..
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEE
Confidence 55888999999994333344443 346677799999999554 54433
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.80 E-value=7.8 Score=40.30 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=113.4
Q ss_pred EEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEE-eecCCCeE
Q 015220 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT-YSAQDSIY 217 (411)
Q Consensus 139 IrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt-~~~~ds~y 217 (411)
+|+.-++..++-|+++. ..-| -+.+=++..|++.+-.+.+-..- .=|--+.|- +|||+.- -+-=+|++
T Consensus 147 ~H~a~~tP~~~~l~v~D--LG~D-------ri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FH-pn~k~aY~v~EL~stV 215 (346)
T COG2706 147 VHSANFTPDGRYLVVPD--LGTD-------RIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFH-PNGKYAYLVNELNSTV 215 (346)
T ss_pred cceeeeCCCCCEEEEee--cCCc-------eEEEEEcccCccccccccccCCC-CCcceEEEc-CCCcEEEEEeccCCEE
Confidence 66777777777777733 2222 12222444788766554433211 124457774 5666532 22338999
Q ss_pred EEEEeeC----ceEEEEec--------cCceeEEEEe-CCEEEEEEecCCCceeeEEEEec-CCcEEeEee-eccccCCc
Q 015220 218 KVFDLKN----YTMLYSIS--------DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFN-HLLHRNKK 282 (411)
Q Consensus 218 kVWdL~~----Ys~iysLs--------~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-tG~~L~t~~-~LL~h~K~ 282 (411)
-||.+.+ ++.|+.|. +....+|.|| ||-||-++++.|+ .|.++.+. +|..|.... ...+-+-|
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--SIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--eEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 9999998 45777776 2388999999 9999999999999 66777775 334344322 34444557
Q ss_pred ceeeeeecceeEEe--ecCceeeEE--EcccceEEEeec-cccCCCceEEEE
Q 015220 283 VDFIEQFNEKLLVK--QENENLQIL--DVRNFELTEVSR-TEFMTPSAFIFL 329 (411)
Q Consensus 283 I~FLE~~~ekllIK--Qe~~~LkI~--dL~t~e~~~v~~-T~f~hpsAfifL 329 (411)
=+|.-=..+.+||+ |++.+|.++ |=.||++.+... -.-..|-++.|+
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77777777777765 688889887 456788887544 223345566654
No 249
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=93.73 E-value=0.14 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred cccCCCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 318 TEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 318 T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
+..+|...+..+..+ +.++|. .|++|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 777888888888877 778888 889999997
No 250
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.71 E-value=9.9 Score=39.46 Aligned_cols=161 Identities=9% Similarity=0.065 Sum_probs=85.9
Q ss_pred ceeEEEEe-CCEE-EEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eEEee---cCceeeEEEc
Q 015220 235 NVQEIKIS-PGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDV 307 (411)
Q Consensus 235 ~VqeIkIS-dG~~-Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL 307 (411)
....-+.| ||.. ++.....+...-|-++++.||+...=+. .......-..++|+ +++.+ ++..|-++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 56677888 7874 5543433334467889999998654211 11112223456664 43322 3456777799
Q ss_pred ccceEEEeeccccCCCceEEEEeeceeEEEE-ecC--eEEEEecC-Cceee-eeccccccCCCCccceEEEcCCCCEEEE
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNR--TVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~--tI~iWn~~-Gel~~-s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.+++..++......+-+....=..++++++- +.+ -|-+.++. |+.-+ ++++. + + ..+||||+.|+=
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~------~-~~~SPDG~~Ia~ 335 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N------N-SSVSTYKNYIVY 335 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c------C-ceECCCCCEEEE
Confidence 9998877633221111111111123554444 333 46666777 55422 33322 1 1 378999998865
Q ss_pred EecCCCCCccccCCceEEEeeecceee
Q 015220 383 YCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 383 ~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.+... +..+..+...|-+-|+.+|+.
T Consensus 336 ~~~~~-~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 336 SSRET-NNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred EEcCC-CcccCCCCcEEEEEECCCCCe
Confidence 55432 222222235777888888864
No 251
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.61 E-value=6.3 Score=36.86 Aligned_cols=236 Identities=14% Similarity=0.183 Sum_probs=122.9
Q ss_pred cceehhhhccccceeeec-ccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCR-ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~-~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
++.+++=+..|+ -.|+. ...+..=.+...+ |..|-.-+.=+.++++| | ..|..... ..+.......
T Consensus 7 ~~~L~vGt~~Gl-~~~~~~~~~~~~~i~~~~~---I~ql~vl~~~~~llvLs----d--~~l~~~~L--~~l~~~~~~~- 73 (275)
T PF00780_consen 7 GDRLLVGTEDGL-YVYDLSDPSKPTRILKLSS---ITQLSVLPELNLLLVLS----D--GQLYVYDL--DSLEPVSTSA- 73 (275)
T ss_pred CCEEEEEECCCE-EEEEecCCccceeEeecce---EEEEEEecccCEEEEEc----C--CccEEEEc--hhhccccccc-
Confidence 455555577785 55554 2222222333333 77777777777777765 2 34444333 3332222111
Q ss_pred Ccceee--------cccCCCCeEE-eeCCCCeEEEeecCCCeEEEEEeeC----c-eEEEEec-cCceeEEEEeCCEEEE
Q 015220 184 FALFES--------ESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKN----Y-TMLYSIS-DKNVQEIKISPGIMLL 248 (411)
Q Consensus 184 ~~LF~~--------~~l~~PgfvE-FDd~NGkiLt~~~~ds~ykVWdL~~----Y-s~iysLs-~~~VqeIkISdG~~La 248 (411)
...+.+ ...+.-.|+. -...++......+..+.+.||.... + +.+.+++ .+.++.+...++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v 153 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICV 153 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEE
Confidence 001111 1122222222 2234444444456666999999876 3 5666665 5688888888555433
Q ss_pred EEecCCCceeeEEEEecCCcEEeEe---------eeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccc
Q 015220 249 IFTKASGHVPLKILSIEDGTVLKSF---------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (411)
Q Consensus 249 i~q~t~~~ipiKIl~I~tG~~L~t~---------~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~ 319 (411)
-. .--.-++|+.||+...-+ .......+|+..+.+..+..|+-- +++=++==..|++.+ ..+.
T Consensus 154 ~~-----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r-~~~i 225 (275)
T PF00780_consen 154 GT-----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSR-KSTI 225 (275)
T ss_pred Ee-----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCc-ccEE
Confidence 33 333667788877664421 112233456766666633333321 123333223444443 2222
Q ss_pred cCCCceEEEEeeceeEEEEecCeEEEEecC-Cceeeeeccccc
Q 015220 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLL 361 (411)
Q Consensus 320 f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~ 361 (411)
......-.+.+....++.+.++.|+||++. |+|+-+++.+..
T Consensus 226 ~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 226 QWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred EcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEECCCE
Confidence 222233334445677778888999999999 999998876544
No 252
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=93.36 E-value=0.97 Score=47.35 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=81.6
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE--eecCceeeEEEccc---ceEEEeec
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRN---FELTEVSR 317 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI--KQe~~~LkI~dL~t---~e~~~v~~ 317 (411)
+.--..+.+.+.....+++|+.+.|...- .|||-+-+-=+.+++|..+| +-.+++|+|-..-. .+.++.
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-- 191 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-- 191 (390)
T ss_pred ccceEEEEeecCCceeeeeecccccCcch----hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--
Confidence 44445677888888999999999866554 58998999889999888744 45889999887655 444443
Q ss_pred cccCCCceE--EEEeeceeEEEE-ecCeEEEEecC-Cceeeeeccc
Q 015220 318 TEFMTPSAF--IFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 318 T~f~hpsAf--ifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H 359 (411)
||.+-| ++|+-+++++|. .|+|+++||.. |..+.+|+=.
T Consensus 192 ---GH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 192 ---GHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred ---ccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccchh
Confidence 344333 467888999999 99999999999 9988776543
No 253
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.04 E-value=7.4 Score=36.03 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=105.6
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEec-----cCceeEEEEe-CCEEEEEEecCCCcee---eEEEE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-----DKNVQEIKIS-PGIMLLIFTKASGHVP---LKILS 263 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs-----~~~VqeIkIS-dG~~Lai~q~t~~~ip---iKIl~ 263 (411)
|.=+-++..+|+.++... ....++|+++.+ .+..+. ....-++.+. +|.+.+.......... =+||.
T Consensus 42 ~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 666667766788888543 445566988864 566662 2367788998 8886666554443333 36777
Q ss_pred ecCC-cEEeEeeeccccCCcceeeeeecce--eEE-eecCceeeEEEccc--ceEE---Eee--ccccCCCceEEEEeec
Q 015220 264 IEDG-TVLKSFNHLLHRNKKVDFIEQFNEK--LLV-KQENENLQILDVRN--FELT---EVS--RTEFMTPSAFIFLYEN 332 (411)
Q Consensus 264 I~tG-~~L~t~~~LL~h~K~I~FLE~~~ek--llI-KQe~~~LkI~dL~t--~e~~---~v~--~T~f~hpsAfifLy~s 332 (411)
+..+ +...-.. .-.-.+=|..++++ +++ -+..+.|..+|+.. ++.. .+. ....+.|..+..=..-
T Consensus 120 ~~~~~~~~~~~~----~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 120 IDPDGKVTVVAD----GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EETTSEEEEEEE----EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred ECCCCeEEEEec----CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 7766 3322221 22334567788776 443 45788899999963 2121 111 1111234555544455
Q ss_pred eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEE-cCCCCEEEEE
Q 015220 333 QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 383 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~I-s~Dqd~iiS~ 383 (411)
.||++. ..+.|.++|++|+++...+--.. ...++.. -+|++.|+--
T Consensus 196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-----~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPDGKLLREIELPVP-----RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEEETTTEEEEEETTSCEEEEEE-SSS-----SEEEEEEESTTSSEEEEE
T ss_pred CEEEEEcCCCEEEEECCCccEEEEEcCCCC-----CEEEEEEECCCCCEEEEE
Confidence 888887 79999999999999887654422 3445555 6777766543
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.97 E-value=1.1 Score=52.62 Aligned_cols=243 Identities=14% Similarity=0.132 Sum_probs=140.4
Q ss_pred cccceEEEeec--c-ceehhhhccccceeeecc-------cccEEEEEe--CCCCceEEEEEeecCCCeEEEEEeEecCC
Q 015220 94 KRSKIIEIVAA--R-DIVFALAQSGVCAAFCRE-------TNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDN 161 (411)
Q Consensus 94 ~RS~V~EIv~a--~-dii~~L~~sG~c~af~~~-------t~~~ic~lN--~s~~evIrsifyN~~n~slI~vSv~~sd~ 161 (411)
.++.|..+... + ++.+-...-|+..+|+.. +.+-.|..- .+.-++|-.++ +++++-+ | .+|+
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~---~~~~~Av-~--t~DG 1120 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG---NGDQFAV-S--TKDG 1120 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc---CCCeEEE-E--cCCC
Confidence 56777777766 3 577888888999999863 222222222 13333444433 3344443 1 4444
Q ss_pred Ccee------eeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC-
Q 015220 162 FSSL------RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK- 234 (411)
Q Consensus 162 ~s~L------~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~- 234 (411)
+=.+ .-+...+++.|.-+.....+ -++... | .+++.. -.|+|.-+.+-+-.||.+...-+..+..+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~---vv~m~a--~-~~~~~S-~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGV---VVSMHA--F-TAIVQS-HVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCc---eEEeec--c-cccccc-eeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 2111 11111122222212111111 011111 1 123333 48889999999999999998877666644
Q ss_pred ---ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-----E-Eee-cCceeeE
Q 015220 235 ---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-----L-VKQ-ENENLQI 304 (411)
Q Consensus 235 ---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-----l-IKQ-e~~~LkI 304 (411)
-|.++.++++.=.|+.--+... +-+|||-=+.+..+..+ ++..+|.=++..+=+- . --| .++.+-+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~--l~lWDLRF~~~i~sw~~--P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQ--LVLWDLRFRVPILSWEH--PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCce--EEEEEeecCceeecccC--cccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 8999999955544444444444 99999999999988665 5557776666654332 2 223 6788999
Q ss_pred EEcccceEEEeeccc-------cCCCc---------eEEEEeec---eeEEEE-ecCeEEEEecC-Ccee
Q 015220 305 LDVRNFELTEVSRTE-------FMTPS---------AFIFLYEN---QLFLTF-RNRTVAVWNFR-GELV 353 (411)
Q Consensus 305 ~dL~t~e~~~v~~T~-------f~hps---------AfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~ 353 (411)
||+.+|.+..|-.+- +..|+ +.++.... .+.+|+ +|.+||.||.. .+..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999999887732222 22333 22222222 556777 99999999987 5444
No 255
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.88 E-value=14 Score=38.78 Aligned_cols=230 Identities=14% Similarity=0.139 Sum_probs=121.6
Q ss_pred ceehhhhccccceeeecccccEEEEEeCCCCc-----eEEE-EEeecCCCeEEEEEeEecCC-----CceeeeEeeehhh
Q 015220 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE-----VIRS-LFYNKNNDSLITVSVYASDN-----FSSLRCRSTRIEY 174 (411)
Q Consensus 106 dii~~L~~sG~c~af~~~t~~~ic~lN~s~~e-----vIrs-ifyN~~n~slI~vSv~~sd~-----~s~L~cr~~~~~~ 174 (411)
+.|++-+..|...|+|..||+.+-..+..+.. +--+ ++++ +.+++ .....+. ...|.|- +
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~---~~v~v-g~~~~~~~~~~~~g~v~al-----D 181 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK---KLVII-GSSGAEFFACGVRGALRAY-----D 181 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC---CEEEE-eccccccccCCCCcEEEEE-----E
Confidence 88888889999999999999999887765542 1111 2332 23333 2111111 1222222 2
Q ss_pred hhhCCCCCCCcceeecc-----------------------cCCCCeEEeeCCCCeEEEeecCC-----------------
Q 015220 175 IRRGKPDAGFALFESES-----------------------LKWPGFVEFDDVNGKVLTYSAQD----------------- 214 (411)
Q Consensus 175 i~~gk~~~~~~LF~~~~-----------------------l~~PgfvEFDd~NGkiLt~~~~d----------------- 214 (411)
..-||. +..... -.|. -.-+|..+|.+++...+.
T Consensus 182 ~~TG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 182 VETGKL-----LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred CCCCce-----eeEeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 222222 222111 0111 145666778777765432
Q ss_pred CeEEEEEeeCceEEEEe--ccC-----------ceeEEEEeCCE-EEEEEecCCCceeeEEEEecCCcEEeEeeeccccC
Q 015220 215 SIYKVFDLKNYTMLYSI--SDK-----------NVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (411)
Q Consensus 215 s~ykVWdL~~Ys~iysL--s~~-----------~VqeIkISdG~-~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~ 280 (411)
+.+--.|++|.+.+-+. ..+ .+.++..-+|. .-+++..+.. -.+-.+|++||+++.+......
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-G~l~ald~~tG~~~W~~~~~~~-- 332 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-GFFYVLDRTTGKLISARPEVEQ-- 332 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-ceEEEEECCCCcEeeEeEeecc--
Confidence 36777888888887443 322 11222211221 1122222221 2267899999999998553201
Q ss_pred CcceeeeeecceeEE------------------eecCceeeEEEcccceEEEeeccc-------cCCCc--eEEEEeece
Q 015220 281 KKVDFIEQFNEKLLV------------------KQENENLQILDVRNFELTEVSRTE-------FMTPS--AFIFLYENQ 333 (411)
Q Consensus 281 K~I~FLE~~~ekllI------------------KQe~~~LkI~dL~t~e~~~v~~T~-------f~hps--AfifLy~sq 333 (411)
. +...++.+++ +..+..|-.+|+.+|+..=--+.. .+.|. .-..+....
T Consensus 333 -~---~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 333 -P---MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred -c---cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence 1 2223344444 334568999999998865411111 00111 112233345
Q ss_pred eEEEEecCeEEEEecC-Cceeeeec
Q 015220 334 LFLTFRNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 334 lFlSfsd~tI~iWn~~-Gel~~s~e 357 (411)
+|+.-.|+.+...|.+ |+++-+++
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEE
Confidence 5555589999999998 99887654
No 256
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.75 E-value=15 Score=38.65 Aligned_cols=138 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred eCCCCe---EEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEec--------------CCCceeeEEEE
Q 015220 201 DDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK--------------ASGHVPLKILS 263 (411)
Q Consensus 201 Dd~NGk---iLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~--------------t~~~ipiKIl~ 263 (411)
.+.+|. ++.....++.+-..|.+|.+.+.+.... ...+..+++.+.+-... +...-.+--+|
T Consensus 294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 345665 4444556888999999999999765421 12344556655443211 12234577889
Q ss_pred ecCCcEEeEeeeccccCC-----cc--eeeeeecceeEEeecCceeeEEEcccceEEE---eeccccCCCceEEEEeece
Q 015220 264 IEDGTVLKSFNHLLHRNK-----KV--DFIEQFNEKLLVKQENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYENQ 333 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K-----~I--~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~---v~~T~f~hpsAfifLy~sq 333 (411)
+.||+.+.++....++.. +. --+.+.++.+++-..+..|-.+|..||+..- ++......| +++++..+
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~g~ 450 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVNGK 450 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeCCE
Confidence 999999999775422211 11 1356778888998899999999999998764 433443333 44555668
Q ss_pred eEEEEecC
Q 015220 334 LFLTFRNR 341 (411)
Q Consensus 334 lFlSfsd~ 341 (411)
+|+...++
T Consensus 451 ~yv~~~~g 458 (488)
T cd00216 451 QYVGVMVG 458 (488)
T ss_pred EEEEEEec
Confidence 88887655
No 257
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=92.42 E-value=3.4 Score=45.12 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeCceE--EEEec------------------cCc--eeEEEEeCCEEEEEEecCCC
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------------------DKN--VQEIKISPGIMLLIFTKASG 255 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~--iysLs------------------~~~--VqeIkISdG~~Lai~q~t~~ 255 (411)
++|+.-+.-.|+-+..+|.+=+||++.... .-.|+ ..+ +..... ||.+.-- .-..-
T Consensus 248 ~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss-DG~i~~W-~~~~l 325 (555)
T KOG1587|consen 248 LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS-DGSICSW-DTDML 325 (555)
T ss_pred EEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec-CCcEeee-ecccc
Confidence 468888888899999999999999998554 22222 112 222211 6654222 22222
Q ss_pred ceeeEEEEecC--------CcEEeEeeeccccCCcceeeeeecceeEEeecCc----------e-eeEEEcccceEEEee
Q 015220 256 HVPLKILSIED--------GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE----------N-LQILDVRNFELTEVS 316 (411)
Q Consensus 256 ~ipiKIl~I~t--------G~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~----------~-LkI~dL~t~e~~~v~ 316 (411)
..|+.+.-+++ .+....+..-++..-|..||.=..++.+.+=-.+ + +.-+.++-|-.+.|.
T Consensus 326 ~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~ 405 (555)
T KOG1587|consen 326 SLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS 405 (555)
T ss_pred ccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee
Confidence 22332222221 1222233445677778888888888887771110 0 112222223333333
Q ss_pred ccccCCCceEEEEeeceeEEEEecCeEEEEecC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcccc
Q 015220 317 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (411)
Q Consensus 317 ~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~ 394 (411)
..-| ...+|+|..|-+++||.-. --++..++.|.. .+..++=||.-=.+|..-.+
T Consensus 406 ~nPF----------~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-----~v~~vaWSptrpavF~~~d~-------- 462 (555)
T KOG1587|consen 406 RNPF----------YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-----YVTDVAWSPTRPAVFATVDG-------- 462 (555)
T ss_pred cCCC----------ccceeeeeccceeEeccccCCCCcchhhhhccc-----eeeeeEEcCcCceEEEEEcC--------
Confidence 2222 1278999999999999987 458899999888 57788888887666643332
Q ss_pred CCceEEEeeecc
Q 015220 395 GNGKLFVSLLMF 406 (411)
Q Consensus 395 ~~gtI~i~~i~t 406 (411)
+|.|+||||.-
T Consensus 463 -~G~l~iWDLl~ 473 (555)
T KOG1587|consen 463 -DGNLDIWDLLQ 473 (555)
T ss_pred -CCceehhhhhc
Confidence 48999999863
No 258
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=8.7 Score=39.87 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=109.1
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC----ceeEEEEe-----CCEEEEEEecCCCceeeEEEEec-----C-
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-----PGIMLLIFTKASGHVPLKILSIE-----D- 266 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~----~VqeIkIS-----dG~~Lai~q~t~~~ipiKIl~I~-----t- 266 (411)
|..||-++.|+.|.++||||++.-+-=..+|++ +=+-+||. =|+++|.-.--. -++||-=+ .
T Consensus 22 D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr---tv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 22 DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR---TVSIWEEQEKSEEAH 98 (361)
T ss_pred cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC---ceeeeeecccccccc
Confidence 357999999999999999999876666666643 33334443 356655533222 24555431 1
Q ss_pred CcEEeEeeeccccCCcceeeeeecc--ee--EEeecCceeeEEEccc----------ceEEEeeccccCCCceEEEEeec
Q 015220 267 GTVLKSFNHLLHRNKKVDFIEQFNE--KL--LVKQENENLQILDVRN----------FELTEVSRTEFMTPSAFIFLYEN 332 (411)
Q Consensus 267 G~~L~t~~~LL~h~K~I~FLE~~~e--kl--lIKQe~~~LkI~dL~t----------~e~~~v~~T~f~hpsAfifLy~s 332 (411)
|..-..-+.|.-.+..|.=++--+- ++ --.+.+.-|+||+... .|+..|+.+.-.+..---||.-+
T Consensus 99 ~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn 178 (361)
T KOG2445|consen 99 GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWN 178 (361)
T ss_pred cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeec
Confidence 1111111112233333332332222 22 2345777888887654 56665655544333333344433
Q ss_pred ------eeEEEEecC------eEEEEecC--Cc---eeeeeccccccCCCCccceEEEcC----CCCEEEEEecCCCCCc
Q 015220 333 ------QLFLTFRNR------TVAVWNFR--GE---LVTSFEDHLLWHPDCNTNNIYITS----DQDLIISYCKADSDDP 391 (411)
Q Consensus 333 ------qlFlSfsd~------tI~iWn~~--Ge---l~~s~e~H~~~~~~c~~n~i~Is~----Dqd~iiS~~~d~~~~~ 391 (411)
++++.++|. .+.||... |. -+.+|.||-- -+..|.-.| +=.+|..+|+|
T Consensus 179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-----pI~di~wAPn~Gr~y~~lAvA~kD----- 248 (361)
T KOG2445|consen 179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-----PIRDISWAPNIGRSYHLLAVATKD----- 248 (361)
T ss_pred cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-----cceeeeeccccCCceeeEEEeecC-----
Confidence 889999888 99999998 42 3447777754 455554444 56789999999
Q ss_pred cccCCceEEEeeecc
Q 015220 392 LAEGNGKLFVSLLMF 406 (411)
Q Consensus 392 ~~~~~gtI~i~~i~t 406 (411)
| |.||++++
T Consensus 249 -----g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 -----G-VRIFKVKV 257 (361)
T ss_pred -----c-EEEEEEee
Confidence 3 88888874
No 259
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=1.7 Score=43.83 Aligned_cols=247 Identities=13% Similarity=0.112 Sum_probs=145.8
Q ss_pred EeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeee---hhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeE
Q 015220 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR---IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (411)
Q Consensus 131 lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~---~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGki 207 (411)
|-..+++.||.+-++-+-.-|-|.| ||. ..|.-.+. ..++...-..-..|.. ++.-.||-| |.+
T Consensus 6 idt~H~D~IHda~lDyygkrlATcs---SD~--tVkIf~v~~n~~s~ll~~L~Gh~GPVw-qv~wahPk~-------G~i 72 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCS---SDG--TVKIFEVRNNGQSKLLAELTGHSGPVW-KVAWAHPKF-------GTI 72 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeec---CCc--cEEEEEEcCCCCceeeeEecCCCCCee-EEeeccccc-------CcE
Confidence 3345667777776666666666644 232 12211111 0011110001112332 356678876 889
Q ss_pred EEeecCCCeEEEEEeeCce--EEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCC-cEEeEeeeccccCCc
Q 015220 208 LTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKK 282 (411)
Q Consensus 208 Lt~~~~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG-~~L~t~~~LL~h~K~ 282 (411)
|+++.=|+-..||..++.. .+|+-.+++.+--.|+ |...=++.-+..+--.|.|++..+. .-.-+ ++...|.--
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~-ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS-KIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch-hhhhccccc
Confidence 9999999999999999964 6677777755555555 5544444455556666777777654 11111 112233333
Q ss_pred ceeeeeecc---e------------eEEee-cCceeeEEEcccceEEEeeccccCCCceEEEEeec-------eeEEEE-
Q 015220 283 VDFIEQFNE---K------------LLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-------QLFLTF- 338 (411)
Q Consensus 283 I~FLE~~~e---k------------llIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-------qlFlSf- 338 (411)
|+.+-=.+. + -|+-- -++.+|||+.-++ .+++..|+=+|..++-=+|-- -..+|.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 333322222 1 12222 4678999999998 777788888999888665522 335666
Q ss_pred ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 339 RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+|+++-||.-+.|. -.-+.-++=.-.|..-.+--|..|-+|.-++-|. .+.+|-
T Consensus 231 qDg~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN----------kvtlwk 284 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN----------KVTLWK 284 (299)
T ss_pred CCCcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEEEEecCCc----------EEEEEE
Confidence 99999999998441 1111222222345677888899999998888887 777773
No 260
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=92.03 E-value=4.7 Score=44.47 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=90.7
Q ss_pred CCCCeEEEeecCCCeEEEEEeeC---------ceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~---------Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
.++|--|+..++|+.+|+|+=.. -+.+|..- +-+=..|-.+ .||...-.. .-+. -+-=|..|||-+|
T Consensus 113 ~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL-~~n~-k~i~WkAHDGiiL 190 (737)
T KOG1524|consen 113 SPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPL-AANS-KIIRWRAHDGLVL 190 (737)
T ss_pred CCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeec-cccc-ceeEEeccCcEEE
Confidence 46888999999999999998544 34555554 2244445555 444322222 2222 2234888999888
Q ss_pred eEeeeccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecCeEEEE
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNRTVAVW 346 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~tI~iW 346 (411)
.- -- ..-.=+|.+ |+-+.||||-.-.-++. --.|-.+...++.+ ++|+.+|=+|.|+=
T Consensus 191 ~~---~W-----------~~~s~lI~sgGED~kfKvWD~~G~~Lf~----S~~~ey~ITSva~npd~~~~v~S~nt~R~~ 252 (737)
T KOG1524|consen 191 SL---SW-----------STQSNIIASGGEDFRFKIWDAQGANLFT----SAAEEYAITSVAFNPEKDYLLWSYNTARFS 252 (737)
T ss_pred Ee---ec-----------CccccceeecCCceeEEeecccCccccc----CChhccceeeeeeccccceeeeeeeeeeec
Confidence 72 11 111124555 55588999988777764 22244555555544 89999999999976
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.++ |... ++.-|+||--+.+||..
T Consensus 253 ~p~~GSif----------------nlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 253 SPRVGSIF----------------NLSWSADGTQATCGTST 277 (737)
T ss_pred CCCccceE----------------EEEEcCCCceeeccccC
Confidence 666 6543 44455666555555544
No 261
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.00 E-value=0.22 Score=55.46 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=45.1
Q ss_pred ceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 332 NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 332 sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
+|+.+. -++.+-++|.+ |.++.+|.+|.. .++.|+-|.||+...||++|+.
T Consensus 25 sqL~lA-Ag~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 25 TQLILA-AGSRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred ceEEEe-cCCEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccCCCcee
Confidence 355554 56678899999 999999999999 9999999999999999999993
No 262
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.92 E-value=14 Score=36.39 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=73.8
Q ss_pred CceeEEEEe-CCEEEEEEecCCCceeeEEEEe--cCCcEE----eEeeecc--ccCCcceeeeee--cceeEEeecCcee
Q 015220 234 KNVQEIKIS-PGIMLLIFTKASGHVPLKILSI--EDGTVL----KSFNHLL--HRNKKVDFIEQF--NEKLLVKQENENL 302 (411)
Q Consensus 234 ~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I--~tG~~L----~t~~~LL--~h~K~I~FLE~~--~ekllIKQe~~~L 302 (411)
.+.-.|+.. +|.|++...+.+ -+-++++ .+..+- ..+..-+ .+++.++=|.-. +..+++.+|..+.
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~---~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQ---RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK 141 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTT---EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE
T ss_pred CCceeEEEECCCEEEEEEcCCC---cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh
Confidence 366677776 787776654444 2334444 222211 1222222 367778888864 4678999999999
Q ss_pred eEEEccc---ceEEEee--------ccccCCCceEEEEeec-eeEE-EEecCeEEEEecCCceee--eecc--ccccCCC
Q 015220 303 QILDVRN---FELTEVS--------RTEFMTPSAFIFLYEN-QLFL-TFRNRTVAVWNFRGELVT--SFED--HLLWHPD 365 (411)
Q Consensus 303 kI~dL~t---~e~~~v~--------~T~f~hpsAfifLy~s-qlFl-Sfsd~tI~iWn~~Gel~~--s~e~--H~~~~~~ 365 (411)
+||.+.. +....+. .--...||+..+=..+ ++|+ |-.++.|-..|..|.++. +|.. |-++..-
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS--
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCccccc
Confidence 9999875 2222211 1123367887775555 4433 337889999999999877 4443 3222222
Q ss_pred CccceEEEcCCCCEEEEE
Q 015220 366 CNTNNIYITSDQDLIISY 383 (411)
Q Consensus 366 c~~n~i~Is~Dqd~iiS~ 383 (411)
.---=|++.+||.+-|+.
T Consensus 222 ~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 222 PQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -SEEEEEE-TT--EEEEE
T ss_pred CCccEEEECCCCCEEEEc
Confidence 344568889999888874
No 263
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=91.90 E-value=9.2 Score=43.55 Aligned_cols=178 Identities=12% Similarity=0.102 Sum_probs=95.5
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCE-EEEEEecCCCceeeEEEEecCCcE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~-~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
.-.-|-+|++|. .-+.+++++..+++-+||+.+=+.||.+- |.+--.+||- ++-+ .-.++..--.|.-
T Consensus 344 ~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~---v~~~n~~~~~~n~~v-------~itav~~~~~gs~ 412 (792)
T KOG1963|consen 344 PQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQ---VCDENYSDGDVNIQV-------GITAVARSRFGSW 412 (792)
T ss_pred ccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEE---EEeecccCCcceeEE-------eeeeehhhccceE
Confidence 444566788887 66788999999999999999988776653 1111111111 0000 0001111111333
Q ss_pred EeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccC--CCceEEEEeec-----eeEEEE-ecC
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM--TPSAFIFLYEN-----QLFLTF-RNR 341 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~--hpsAfifLy~s-----qlFlSf-sd~ 341 (411)
+.| +|+-+|+.-.+-+-+.||.|=-...+..-+..|.-. |-.+|++.... .-++|. .|+
T Consensus 413 maT-------------~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 413 MAT-------------LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred EEE-------------eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC
Confidence 333 233333333333333344443222222111222222 33344433322 357777 899
Q ss_pred eEEEEecCCc---------eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 342 TVAVWNFRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 342 tI~iWn~~Ge---------l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.++||-+.++ =.+-.-+|+ -+..+++..-|.||-+|..+-.+ +|-|||-.|
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy---~k~~i~a~~fs~dGslla~s~~~-----------~Itiwd~~~ 539 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSY---HKTPITALCFSQDGSLLAVSFDD-----------TITIWDYDT 539 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeecc---ccCcccchhhcCCCcEEEEecCC-----------EEEEecCCC
Confidence 9999999533 122233331 23488999999999777766555 899999876
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.75 E-value=18 Score=37.53 Aligned_cols=172 Identities=9% Similarity=0.056 Sum_probs=93.3
Q ss_pred CCCe-EEEeec---CCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 203 VNGK-VLTYSA---QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 203 ~NGk-iLt~~~---~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
++|+ ++.|.. .+..+-++|+.+.+.-.-.. ...+.....| ||-.|++........-|-++++.+|+... +.
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-- 273 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-- 273 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cc--
Confidence 5565 344422 24567788888876322212 2345567788 88666666655667778888998887433 11
Q ss_pred cccCCcceeeeeecce--eEEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec------C--e
Q 015220 277 LHRNKKVDFIEQFNEK--LLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN------R--T 342 (411)
Q Consensus 277 L~h~K~I~FLE~~~ek--llIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd------~--t 342 (411)
.....-..-.-++|+ +.+-+ +...|-++|+.+|+..++. ..+.......-..+.+.++- .+ + .
T Consensus 274 -~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 274 -NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred -cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCCCcCceECCCCCEEEEEEcCCCcccCCCCcE
Confidence 111101112344444 54443 3346888899999987753 22221110111122343333 22 2 5
Q ss_pred EEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 343 I~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|.+.|+.|.-.+.|..+. .......||||+.|+-...+
T Consensus 351 I~v~d~~~g~~~~LT~~~------~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 351 LYLISTNSDYIRRLTANG------VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EEEEECCCCCeEECCCCC------CcCCeEECCCCCEEEEEEcc
Confidence 666677744456666542 12357899999987655443
No 265
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.70 E-value=6.1 Score=40.99 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=38.3
Q ss_pred cCeEEEEecC---Cceeeeec-cccccCCCCccceEEEcCCCC-EEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 340 NRTVAVWNFR---GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 340 d~tI~iWn~~---Gel~~s~e-~H~~~~~~c~~n~i~Is~Dqd-~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+..-+||-++ +.+++.++ .|. +++|.+|.|++ +|+.-+.. +|++.++|..|||.+
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~~---------~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSAG---------DGTLDVYDAATGKLV 325 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEETT---------TTEEEEEETTT--EE
T ss_pred CCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcCC---------CCeEEEEeCcCCcEE
Confidence 4456777666 77888777 343 57999999999 55444443 369999999999975
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=1 Score=49.70 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=101.0
Q ss_pred eeEEEEec-------CCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCC----ceE
Q 015220 258 PLKILSIE-------DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTP----SAF 326 (411)
Q Consensus 258 piKIl~I~-------tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hp----sAf 326 (411)
-+|+|+|. |..+..| ...|+|||+-|-...+...|++-+.-|-+||---|.+.- .-++... --+
T Consensus 758 TVKLWSik~EgD~~~tsaCQfT---Y~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~La--q~~dapk~~a~~~i 832 (1034)
T KOG4190|consen 758 TVKLWSIKPEGDEIGTSACQFT---YQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLA--QMEDAPKEGAGGNI 832 (1034)
T ss_pred eEEEEEeccccCccccceeeeE---hhhccCcccceeeeeccceeeeccCcceeecccccchhH--hhhcCcccCCCcee
Confidence 47999997 3334455 578999999999999999999999999999977666543 1122111 123
Q ss_pred EEEee--ceeEEEE--ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEE
Q 015220 327 IFLYE--NQLFLTF--RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFV 401 (411)
Q Consensus 327 ifLy~--sqlFlSf--sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i 401 (411)
-+|-. +.++..+ -..||.+.|-+ +|-++.+.---.--||--+..+++-+-|.-+.. +..+|+|-+
T Consensus 833 kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa----------~LSnGci~~ 902 (1034)
T KOG4190|consen 833 KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA----------ALSNGCIAI 902 (1034)
T ss_pred EecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH----------HhcCCcEEE
Confidence 33332 3778888 45699999999 998887766655567778888888887776643 256789999
Q ss_pred eeecceeee
Q 015220 402 SLLMFVTCK 410 (411)
Q Consensus 402 ~~i~tGk~~ 410 (411)
-|-.|||++
T Consensus 903 LDaR~G~vI 911 (1034)
T KOG4190|consen 903 LDARNGKVI 911 (1034)
T ss_pred EecCCCcee
Confidence 999999875
No 267
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=90.20 E-value=1.3 Score=48.32 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=47.2
Q ss_pred eeEEEE-ecCeEEEEecC-Cceee---eeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 333 QLFLTF-RNRTVAVWNFR-GELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~-Gel~~---s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+.+++. +|+.+||.||+ =+|+. +.=|-++ -|--||||++|+.|.+|+ -+-||.+.-+
T Consensus 303 ~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL--------CvcWSPDGKyIvtGGEDD----------LVtVwSf~er 364 (636)
T KOG2394|consen 303 KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL--------CVCWSPDGKYIVTGGEDD----------LVTVWSFEER 364 (636)
T ss_pred ceEEEEecCceEEEeeccHHHHHHHHHhhccceE--------EEEEcCCccEEEecCCcc----------eEEEEEeccc
Confidence 445555 99999999999 44554 3334444 478899999999999999 8999999888
Q ss_pred eee
Q 015220 408 TCK 410 (411)
Q Consensus 408 k~~ 410 (411)
+++
T Consensus 365 RVV 367 (636)
T KOG2394|consen 365 RVV 367 (636)
T ss_pred eEE
Confidence 764
No 268
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=89.98 E-value=4.9 Score=42.95 Aligned_cols=157 Identities=14% Similarity=0.162 Sum_probs=105.0
Q ss_pred CcceeecccCCCCeE---EeeCCCCeEEEeecCCCeEEEEEee------CceEEEEeccC---ceeEEEEe-CCEEEEEE
Q 015220 184 FALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDK---NVQEIKIS-PGIMLLIF 250 (411)
Q Consensus 184 ~~LF~~~~l~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~------~Ys~iysLs~~---~VqeIkIS-dG~~Lai~ 250 (411)
+||.+++.+.|-|-| ||-. ||+-|+++++|--.+||++. +-++|....++ +|-....- ..-+|..+
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cchhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 678888888888864 8876 59999999999999999985 34667655544 45555544 33333322
Q ss_pred ecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeec-ceeEEe-ecCceeeEEEcccce----EEEeeccccCCCc
Q 015220 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVK-QENENLQILDVRNFE----LTEVSRTEFMTPS 324 (411)
Q Consensus 251 q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~-ekllIK-Qe~~~LkI~dL~t~e----~~~v~~T~f~hps 324 (411)
..- --+.+-+|+|.+-+.-|++- -..-.|+-|-|++ +++|+- .......|||.+.+. +++.. ..|+
T Consensus 124 ~~~---~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A----N~~~ 195 (609)
T KOG4227|consen 124 ERW---GTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA----NSGK 195 (609)
T ss_pred CCc---ceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec----CCCc
Confidence 222 12446688888888876642 1123788888876 555444 467778899998754 55532 2578
Q ss_pred eEEEEeec----eeEEEE-ecCeEEEEecC
Q 015220 325 AFIFLYEN----QLFLTF-RNRTVAVWNFR 349 (411)
Q Consensus 325 AfifLy~s----qlFlSf-sd~tI~iWn~~ 349 (411)
+|+-+-.+ .|+++- +.+-+-+||.+
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeec
Confidence 88776654 566666 66677888877
No 269
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.83 E-value=1.5 Score=48.34 Aligned_cols=180 Identities=16% Similarity=0.279 Sum_probs=104.1
Q ss_pred EEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEE
Q 015220 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (411)
Q Consensus 140 rsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykV 219 (411)
|.+-||+-|-.|..| .++ .-.+-++ |.+|.+-.+ |++.+ .-=--|+-++.||= |+.+..++...+
T Consensus 137 RDm~y~~~scDly~~--gsg-----~evYRlN---LEqGrfL~P---~~~~~-~~lN~v~in~~hgL-la~Gt~~g~VEf 201 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLV--GSG-----SEVYRLN---LEQGRFLNP---FETDS-GELNVVSINEEHGL-LACGTEDGVVEF 201 (703)
T ss_pred ccccccCCCccEEEe--ecC-----cceEEEE---ccccccccc---ccccc-ccceeeeecCccce-EEecccCceEEE
Confidence 667788888777773 322 2233332 233333221 23221 00113666777774 344555999999
Q ss_pred EEeeCceEEEEeccC-------------ceeEEEEeC-CEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCccee
Q 015220 220 FDLKNYTMLYSISDK-------------NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (411)
Q Consensus 220 WdL~~Ys~iysLs~~-------------~VqeIkISd-G~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~F 285 (411)
||.++=+..-+|.-. .|..++.+| |+=++++..+.
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G------------------------------- 250 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG------------------------------- 250 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-------------------------------
Confidence 999997754444311 488888884 88777665443
Q ss_pred eeeecceeEEeecCceeeEEEcccceEEEeeccccCCCce-EEEEee--ceeEEEEecCeEEEEecC-Cceeeeeccccc
Q 015220 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSA-FIFLYE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLL 361 (411)
Q Consensus 286 LE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsA-fifLy~--sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~ 361 (411)
.+-||||+++++..|.+-...-|-- +.+... ....+|.-...++||+.. |...++.|--.
T Consensus 251 ---------------~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~- 314 (703)
T KOG2321|consen 251 ---------------SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS- 314 (703)
T ss_pred ---------------cEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC-
Confidence 2334555555555444443333321 111111 255778888899999999 99999887544
Q ss_pred cCCCCccceEEEcCCCCEEEEEecC
Q 015220 362 WHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 362 ~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.+|-+-.=|++-+++.+-.+
T Consensus 315 -----~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 315 -----DLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred -----CcCceeeecCCceEEEecCC
Confidence 45555555777777665433
No 270
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.72 E-value=0.25 Score=53.94 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 349 ~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
+-++-.-|+||.+ -+|.+.-++||++|+|||.|. -|+|||.+.-|++
T Consensus 39 rL~lE~eL~GH~G-----CVN~LeWn~dG~lL~SGSDD~----------r~ivWd~~~~Kll 85 (758)
T KOG1310|consen 39 RLDLEAELTGHTG-----CVNCLEWNADGELLASGSDDT----------RLIVWDPFEYKLL 85 (758)
T ss_pred hcchhhhhccccc-----eecceeecCCCCEEeecCCcc----------eEEeecchhccee
Confidence 3456667899999 789999999999999999998 9999998876654
No 271
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=87.47 E-value=13 Score=41.23 Aligned_cols=207 Identities=17% Similarity=0.300 Sum_probs=129.5
Q ss_pred ceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeE-EeeCCCCeEEEeecCCCeEEEEEeeCceEE--EEeccCceeEE
Q 015220 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV-EFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEI 239 (411)
Q Consensus 163 s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pgfv-EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i--ysLs~~~VqeI 239 (411)
-.=+|..- ||+-|.+-.+|+.|.+-.+.||=|- -||| |-++--.. .++-|++-..+-++ .+|.-..|+.+
T Consensus 280 e~~~l~IW---DI~tG~lkrsF~~~~~~~~~WP~frWS~Dd---Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 280 EGQQLIIW---DIATGLLKRSFPVIKSPYLKWPIFRWSHDD---KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred CCceEEEE---EccccchhcceeccCCCccccceEEeccCC---ceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence 34444444 8889999899999999999999774 3444 44433333 56777776665544 55666699999
Q ss_pred EEe-CCEEEEEEecCCCceee--EEEEecCCcEEeEeee------ccccCCcceeeeeecceeE---EeecCceeeEEEc
Q 015220 240 KIS-PGIMLLIFTKASGHVPL--KILSIEDGTVLKSFNH------LLHRNKKVDFIEQFNEKLL---VKQENENLQILDV 307 (411)
Q Consensus 240 kIS-dG~~Lai~q~t~~~ipi--KIl~I~tG~~L~t~~~------LL~h~K~I~FLE~~~ekll---IKQe~~~LkI~dL 307 (411)
.-| -+++||...+.-+.+|. .|+.+.+++.+++-++ -||=||.=++|..-.+... +|.-=.++.|.-+
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 999 67889999999999985 6799999999998662 2333333333333322221 1111234445544
Q ss_pred ccceEEEeeccccCCCceEEEEe---eceeEEEE----ecCeEEEEecC-----CceeeeeccccccCCCCccceEEEcC
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLY---ENQLFLTF----RNRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITS 375 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy---~sqlFlSf----sd~tI~iWn~~-----Gel~~s~e~H~~~~~~c~~n~i~Is~ 375 (411)
+..++=. -.-..++.|+..+ ...-|.++ ...++.+|.+. -+|+..|+.. .-|+|+.||
T Consensus 433 reKdIpv---e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-------~~N~vfwsP 502 (698)
T KOG2314|consen 433 REKDIPV---EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-------FANTVFWSP 502 (698)
T ss_pred eccCCCc---eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-------ccceEEEcC
Confidence 4433222 1122234444443 22455555 23467777665 2366666663 348999999
Q ss_pred CCCEEEEEecC
Q 015220 376 DQDLIISYCKA 386 (411)
Q Consensus 376 Dqd~iiS~~~d 386 (411)
-|++++-+-.-
T Consensus 503 kG~fvvva~l~ 513 (698)
T KOG2314|consen 503 KGRFVVVAALV 513 (698)
T ss_pred CCcEEEEEEec
Confidence 99999988765
No 272
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.28 E-value=34 Score=34.25 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=92.9
Q ss_pred CcceeecccC-CCCeEEeeCCCCeEEEeecCCCe-EEEEEeeCce------EEEEec---cCceeEEEEeCCEEEEEEec
Q 015220 184 FALFESESLK-WPGFVEFDDVNGKVLTYSAQDSI-YKVFDLKNYT------MLYSIS---DKNVQEIKISPGIMLLIFTK 252 (411)
Q Consensus 184 ~~LF~~~~l~-~PgfvEFDd~NGkiLt~~~~ds~-ykVWdL~~Ys------~iysLs---~~~VqeIkISdG~~Lai~q~ 252 (411)
..+|+...-. |--.+....-...+++......+ -.||-+.... ....|. +.....+...++.++++.+.
T Consensus 217 ~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 217 ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTND 296 (414)
T ss_dssp EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-T
T ss_pred eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCC
Confidence 3577653211 11124555444444444444433 4555444432 333333 22334555558888888877
Q ss_pred CCCceeeEEEEecCCcEEeEeeeccccCC--cceeeeeecceeEEee---cCceeeEEEcc-cceEEEeeccccCCCceE
Q 015220 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQ---ENENLQILDVR-NFELTEVSRTEFMTPSAF 326 (411)
Q Consensus 253 t~~~ipiKIl~I~tG~~L~t~~~LL~h~K--~I~FLE~~~ekllIKQ---e~~~LkI~dL~-t~e~~~v~~T~f~hpsAf 326 (411)
..+.--|--.++.+...-..-..++.+.. .++-+..+.++|++.. ....|.++|+. +.+...++....+. +
T Consensus 297 ~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~---v 373 (414)
T PF02897_consen 297 DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS---V 373 (414)
T ss_dssp T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE---E
T ss_pred CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE---E
Confidence 66766677778887774222213556555 5899999999996654 67899999999 77777766555432 2
Q ss_pred EEEe----eceeEEEEe----cCeEEEEecC-Ccee
Q 015220 327 IFLY----ENQLFLTFR----NRTVAVWNFR-GELV 353 (411)
Q Consensus 327 ifLy----~sqlFlSfs----d~tI~iWn~~-Gel~ 353 (411)
..+. .++++++++ -.++--||+. |++.
T Consensus 374 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 374 SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2222 337788773 3567777777 6643
No 273
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.13 E-value=44 Score=35.38 Aligned_cols=153 Identities=16% Similarity=0.083 Sum_probs=74.2
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE--eeccc-
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VSRTE- 319 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~--v~~T~- 319 (411)
||++++........-.+-++| .+|.+-+.....-.+... +++..++.|+.-.++.+..+|+.-....+ ++...
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~---~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS---FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYY 189 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS---EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce---eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCccc
Confidence 888777774444444444444 478888775533333222 45556555555555999999997543333 33311
Q ss_pred cCCCceEEEEeeceeEEEEe--------------cCeEEEEecCCceee--eeccccccCCC------------------
Q 015220 320 FMTPSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVT--SFEDHLLWHPD------------------ 365 (411)
Q Consensus 320 f~hpsAfifLy~sqlFlSfs--------------d~tI~iWn~~Gel~~--s~e~H~~~~~~------------------ 365 (411)
-+|= .+..+...++++... ...|-..|..|+.+. .+.+|+.-...
T Consensus 190 ~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 1121 122333334433332 334555566699888 68888832111
Q ss_pred --CccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 366 --CNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 366 --c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
--.|+|..-+ |+.+|+|.=.-+ +|-..|..|||+.
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s----------~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQS----------AVIKIDYRTGKIK 306 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-----------EEEEEE-TTS-EE
T ss_pred CccccCccEEeCCCCeEEEEcCcce----------EEEEEECCCCcEE
Confidence 2357777666 888888876665 7777778888864
No 274
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=86.99 E-value=0.58 Score=48.75 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=121.1
Q ss_pred CCC-eEEEeecCCCeEEEEEeeCceEEE-EeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEec--------------
Q 015220 203 VNG-KVLTYSAQDSIYKVFDLKNYTMLY-SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-------------- 265 (411)
Q Consensus 203 ~NG-kiLt~~~~ds~ykVWdL~~Ys~iy-sLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~-------------- 265 (411)
|+| .||+-+.=+.-+.||+|.|.+..+ .-...+++-+++- ||+|-++..+-.=.=|+.|++-+
T Consensus 101 PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 101 PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID 180 (447)
T ss_pred CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc
Confidence 567 567777778999999999988553 3345699999999 99999998887644444333222
Q ss_pred --------CCcEEeEee-------eccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEE
Q 015220 266 --------DGTVLKSFN-------HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (411)
Q Consensus 266 --------tG~~L~t~~-------~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif 328 (411)
||-.|.-.- +.-++.--+-|+|-++.+++++= -+..++|+|-.+=+.+ ++|.|+.++..
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f----~eflhl~s~~d 256 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF----GEFLHLCSYHD 256 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh----hhhccchhccC
Confidence 333333111 22345567889999998888775 4677999998887777 89999999875
Q ss_pred ----Eeec------ee---EEEE--ecCeEEEEecCC------ceeeeecccc----ccCCCCccceEEEcCCCCEEEEE
Q 015220 329 ----LYEN------QL---FLTF--RNRTVAVWNFRG------ELVTSFEDHL----LWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 329 ----Ly~s------ql---FlSf--sd~tI~iWn~~G------el~~s~e~H~----~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
+-+. |+ =|+| .|-.--+|.-.- ++-..+-.-. -=.|-|.+-.++-|+|...+..-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 2222 22 2344 333333343220 0111111111 11467888999999998776432
Q ss_pred ecCCCCCccccCCceEEEeeeccee
Q 015220 384 CKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 384 ~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+| ..+ ..+=+||+..=|
T Consensus 337 -nd----~~P---nalW~Wdlq~l~ 353 (447)
T KOG4497|consen 337 -ND----KYP---NALWLWDLQNLK 353 (447)
T ss_pred -cC----CCC---ceEEEEechhhh
Confidence 22 111 367788886544
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.86 E-value=0.96 Score=49.83 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=83.1
Q ss_pred eccccCCcceee-eeecceeEE-eecCceeeEEEccc-ceEEEee---ccccCCCceEEEEeec--eeEEEEecCeEEEE
Q 015220 275 HLLHRNKKVDFI-EQFNEKLLV-KQENENLQILDVRN-FELTEVS---RTEFMTPSAFIFLYEN--QLFLTFRNRTVAVW 346 (411)
Q Consensus 275 ~LL~h~K~I~FL-E~~~ekllI-KQe~~~LkI~dL~t-~e~~~v~---~T~f~hpsAfifLy~s--qlFlSfsd~tI~iW 346 (411)
...||+.+|..| ++.||+-+| ++.+...|+|.++. |+-+.-+ =|+-.|..-++-+..- ..++.-.|+-|-+|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlW 809 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLW 809 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceee
Confidence 457899988876 578888865 67999999999986 2222211 1566677766655443 23555589999999
Q ss_pred ecC-CceeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 347 n~~-Gel~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
|+- |.|+...++----. -..|.--+-. |--+++.||.+. .|+||+|-.+++
T Consensus 810 DPFigr~Laq~~dapk~~--a~~~ikcl~nv~~~iliAgcsae---------STVKl~DaRsce 862 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEG--AGGNIKCLENVDRHILIAGCSAE---------STVKLFDARSCE 862 (1034)
T ss_pred cccccchhHhhhcCcccC--CCceeEecccCcchheeeeccch---------hhheeeeccccc
Confidence 998 99988665432211 1233333333 788999998886 288888877664
No 276
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.85 E-value=2.8 Score=46.28 Aligned_cols=113 Identities=13% Similarity=0.143 Sum_probs=89.5
Q ss_pred ccccCCcceeeeeecceeEEeecC--ceeeEEEcccceEEEeeccccCCCce---EEEEee--ceeEEEE-ecCeEEEEe
Q 015220 276 LLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSA---FIFLYE--NQLFLTF-RNRTVAVWN 347 (411)
Q Consensus 276 LL~h~K~I~FLE~~~ekllIKQe~--~~LkI~dL~t~e~~~v~~T~f~hpsA---fifLy~--sqlFlSf-sd~tI~iWn 347 (411)
|-||+-=|+.||-.-++-|+++++ -.|-|||....++.-+-.|. |..- +-||-+ +.+.+|+ .|..|+++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 789999999999999999999865 57889999987777654443 4432 233443 4899999 999999999
Q ss_pred cCC-----------ceeeeeccccccCCCCccceEEEcCCC-CEEEEEecCCCCCccccCCceEEEeeec
Q 015220 348 FRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 348 ~~G-----------el~~s~e~H~~~~~~c~~n~i~Is~Dq-d~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+.- +..+.+..|.. -++.|+.-|++ -+.-|++.|- ||.=.||.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~-----rVKria~~p~~PhtfwsasEDG----------tirQyDiR 178 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTD-----RVKRIATAPNGPHTFWSASEDG----------TIRQYDIR 178 (758)
T ss_pred cccccccccccCccchhhhhhhhhh-----hhhheecCCCCCceEEEecCCc----------ceeeeccc
Confidence 982 35567888888 89999999999 8888888885 88777774
No 277
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=86.83 E-value=4.3 Score=44.56 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=64.9
Q ss_pred eeeecceeEEe--ecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecC-Cceeeeecc
Q 015220 286 IEQFNEKLLVK--QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFR-GELVTSFED 358 (411)
Q Consensus 286 LE~~~ekllIK--Qe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~-Gel~~s~e~ 358 (411)
..-++|+..++ +.+.-|+|.|..+=|+..|-+.+| -+++|+.-| ++.+|+ .|..|.||.|. +.+|+.=.|
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 44466766554 688899999999999999999999 689999988 778888 99999999999 999999999
Q ss_pred cccc
Q 015220 359 HLLW 362 (411)
Q Consensus 359 H~~~ 362 (411)
|..|
T Consensus 373 HkSW 376 (636)
T KOG2394|consen 373 HKSW 376 (636)
T ss_pred cccc
Confidence 9998
No 278
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=86.82 E-value=41 Score=34.73 Aligned_cols=188 Identities=12% Similarity=0.039 Sum_probs=94.3
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEE----EeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK----ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIk----ISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
+-.+|+.+++.+.+++|.+.+-+-...+.|...-.|. ++|..+=+. ..++-=-+|++.++-| ..+...|. +
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~--i~sndht~k~~~~~~~-s~~~~~h~--~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLN--IASNDHTGKTMVVSGD-SNKFAVHN--Q 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccccee--eccCCcceeEEEEecC-cccceeec--c
Confidence 3457888889999999999964433223222111111 112221000 0111112333333211 11111110 0
Q ss_pred CCcceeeeeecceeEEee--cCceeeEEEccc-c---eEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC--C
Q 015220 280 NKKVDFIEQFNEKLLVKQ--ENENLQILDVRN-F---ELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR--G 350 (411)
Q Consensus 280 ~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t-~---e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~--G 350 (411)
+--+.-+.++|+.-+... .+..+=.|-+-. + +.+.+.+|.. |..-..|=-.+..|++. +|+++.|||.| |
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-CceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 122555666666665554 222333344433 1 2233455554 44333444444778888 99999999999 6
Q ss_pred ceeeeeccccccCCCCccceEEEcCCC--CEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dq--d~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
.|.++-..... |++=.+.+.-.|+-| |||+ ..|.-+-.++-|..+|+
T Consensus 237 tpm~~~sstrp-~hnGa~R~c~Fsl~g~lDLLf----------~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 237 TPMAEISSTRP-HHNGAFRVCRFSLYGLLDLLF----------ISEHFSRVHVVDTRNYV 285 (344)
T ss_pred cchhhhcccCC-CCCCceEEEEecCCCcceEEE----------EecCcceEEEEEcccCc
Confidence 67665444443 355578888877643 3332 12444566777776664
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=86.53 E-value=24 Score=36.89 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=103.7
Q ss_pred EEEEecCC-CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecce--eE--Eee-cCceeeEEEccc--ceEEEeec-
Q 015220 247 LLIFTKAS-GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK--LL--VKQ-ENENLQILDVRN--FELTEVSR- 317 (411)
Q Consensus 247 Lai~q~t~-~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ek--ll--IKQ-e~~~LkI~dL~t--~e~~~v~~- 317 (411)
+.+...|+ ..=+|-+|++.+-+--.+...+...-..+++|++.+++ |+ .+. +...+-.|.+-. |++..+..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 44455552 12355666666444334444566777788899999988 43 333 244566666654 77766433
Q ss_pred cccCCCceEEEEeece-eEEEE--ecCeEEEEecC--Cceee--eeccccccCCCCc-----cceEEEcCCCCEEEEEec
Q 015220 318 TEFMTPSAFIFLYENQ-LFLTF--RNRTVAVWNFR--GELVT--SFEDHLLWHPDCN-----TNNIYITSDQDLIISYCK 385 (411)
Q Consensus 318 T~f~hpsAfifLy~sq-lFlSf--sd~tI~iWn~~--Gel~~--s~e~H~~~~~~c~-----~n~i~Is~Dqd~iiS~~~ 385 (411)
+.-++|-..+++.+.. .+++- ..+.|.++-++ |.|.. .+..|.+--|.-. .-.+-+||||+++++-+-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 4556776888888885 44444 78999999997 87554 7888988744422 556789999999988653
Q ss_pred CCCCCccccCCceEEEeeecceeee
Q 015220 386 ADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 386 d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++-.|.++++.-|++-
T Consensus 165 ---------G~Dri~~y~~~dg~L~ 180 (346)
T COG2706 165 ---------GTDRIFLYDLDDGKLT 180 (346)
T ss_pred ---------CCceEEEEEcccCccc
Confidence 3347999999988863
No 280
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=86.12 E-value=1.7 Score=44.24 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=73.0
Q ss_pred eecCCCeEEEEEeeCceEE------EEeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCc
Q 015220 210 YSAQDSIYKVFDLKNYTML------YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (411)
Q Consensus 210 ~~~~ds~ykVWdL~~Ys~i------ysLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~ 282 (411)
+++.+.-+-+|+|+..+.- .+|++-.|++++|. ||-+||+.-=-| -|.|++-.|+.+|.- |=-|+.-
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~---RiRVyswrtl~pLAV---LkyHsag 295 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDH---RIRVYSWRTLNPLAV---LKYHSAG 295 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCC---cEEEEEeccCCchhh---hhhhhcc
Confidence 3445777899999987533 45555599999999 999988876555 378999999999998 4457799
Q ss_pred ceeeeeecceeE--EeecCceeeEEEc
Q 015220 283 VDFIEQFNEKLL--VKQENENLQILDV 307 (411)
Q Consensus 283 I~FLE~~~ekll--IKQe~~~LkI~dL 307 (411)
|+.++-+++.-+ .++++..|-+|+|
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999444 4568889999987
No 281
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.98 E-value=1.2 Score=46.55 Aligned_cols=173 Identities=13% Similarity=0.203 Sum_probs=99.8
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEee------CceEEEEeccC------------ceeEEEEe-CCEEEEEEecCCCcee
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDK------------NVQEIKIS-PGIMLLIFTKASGHVP 258 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~------~Ys~iysLs~~------------~VqeIkIS-dG~~Lai~q~t~~~ip 258 (411)
-||-...--+++|+...+++|+=||+ .++.+++.+.+ -|++||.| +|-.+|. ..++.
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils----RDylt 294 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS----RDYLT 294 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE----eccce
Confidence 47888888999999999999999999 36677777744 58899999 7777665 46899
Q ss_pred eEEEEe-cCCcEEeEeeeccccCC------ccee------eeeeccee--EEeecCceeeEEEcccceEEEeeccccCCC
Q 015220 259 LKILSI-EDGTVLKSFNHLLHRNK------KVDF------IEQFNEKL--LVKQENENLQILDVRNFELTEVSRTEFMTP 323 (411)
Q Consensus 259 iKIl~I-~tG~~L~t~~~LL~h~K------~I~F------LE~~~ekl--lIKQe~~~LkI~dL~t~e~~~v~~T~f~hp 323 (411)
+||||+ ++.+++.+....=.-.. +-+. .-.+++.. +--+=++...++|+..|...-+ |+...+
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~--tl~asr 372 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDF--TLEASR 372 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceee--cccccc
Confidence 999999 78888876541000000 0000 12344433 3334467788999776655442 333222
Q ss_pred ceE--EEEeeceeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCE
Q 015220 324 SAF--IFLYENQLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (411)
Q Consensus 324 sAf--ifLy~sqlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~ 379 (411)
..- -.+.-...-.+. +....++|--.- =.+...=|..|||. .|.|++-....|
T Consensus 373 ~~~~~~~~~k~~~V~~~g~r~~~~~~vd~l-df~kkilh~aWhp~--en~ia~aatnnl 428 (433)
T KOG1354|consen 373 KNMKPRKVLKLRLVSSSGKRKRDEISVDAL-DFRKKILHTAWHPK--ENSIAVAATNNL 428 (433)
T ss_pred cCCcccccccceeeecCCCccccccccchh-hhhhHHHhhccCCc--cceeeeeecCce
Confidence 221 111111222222 222222221110 12345569999995 455555444433
No 282
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=85.71 E-value=12 Score=42.82 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=86.5
Q ss_pred CceeeEEEEecCCcEEeEeeeccccCCcceee-------eeecceeEEeecCceeeEEEcccceEEEee--ccccCCCce
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI-------EQFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSA 325 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL-------E~~~ekllIKQe~~~LkI~dL~t~e~~~v~--~T~f~hpsA 325 (411)
+.-.|.-+||++|+++-+... +..-+|.-+ ++.++..++-=.++.|--||.|-.....|- --.+-+..-
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~--~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKV--HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeec--CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 334577899999999887552 222222222 234677788889999999999975422231 113456667
Q ss_pred EEEEeec--eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 326 FIFLYEN--QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 326 fifLy~s--qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
|.|++++ .-++.+ .+|.||++|--|-.-.|+---++ =-+..|-+|.||+.|+.-|+-
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG----~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLG----DPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCC----CCeeEEEecCCCcEEEEeecc
Confidence 8899888 557777 88999999966754333333333 267889999999999999986
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=85.56 E-value=2.5 Score=51.77 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=98.8
Q ss_pred EeecCCCeEEEEEeeCceEEEEec---cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccC---C
Q 015220 209 TYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN---K 281 (411)
Q Consensus 209 t~~~~ds~ykVWdL~~Ys~iysLs---~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~---K 281 (411)
+.+++|+..++|----...++.-- .-.|+.++.+ .|-=..+.+... .|-+|.+. -++..+ ---|+ .
T Consensus 2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg---~l~l~q~~-pk~~~s---~qchnk~~~ 2296 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDG---DLSLWQAS-PKPYTS---WQCHNKALS 2296 (2439)
T ss_pred EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCC---ceeecccC-Ccceec---cccCCcccc
Confidence 357889999999988877775443 2366666666 333223332222 33444443 111111 11122 2
Q ss_pred cceeeeeecceeEEee---cCceeeEEEcc-cceEEEeeccccCCCceEEEEeec---eeEEEE-ecCeEEEEecCC-ce
Q 015220 282 KVDFIEQFNEKLLVKQ---ENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNRTVAVWNFRG-EL 352 (411)
Q Consensus 282 ~I~FLE~~~ekllIKQ---e~~~LkI~dL~-t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~tI~iWn~~G-el 352 (411)
+..||. ..+.=|| +|.++-+||-+ .+....|+ .-|+....++++- |+|+|+ ++|.|-+||.+- .|
T Consensus 2297 Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2297 DFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred ceeeee---hhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 334554 4444444 77899999954 46666776 4477777776654 999999 999999999984 34
Q ss_pred eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 353 ~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
.-++-. .- .++++++|+.- |.|+||++.+
T Consensus 2371 ~h~~~~--------------~~-~~~~f~~~ss~----------g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2371 RHTFQA--------------LD-TREYFVTGSSE----------GNIKIWRLSE 2399 (2439)
T ss_pred HHHhhh--------------hh-hhheeeccCcc----------cceEEEEccc
Confidence 334433 12 67888888766 5999999764
No 284
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.65 E-value=20 Score=38.08 Aligned_cols=127 Identities=12% Similarity=0.197 Sum_probs=64.6
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEE-Ecccce-
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL-DVRNFE- 311 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~-dL~t~e- 311 (411)
..+.+..+ +|.|+++....+- -|++-. +-.-+. .|.-...=|.. .+..-+..++++|+|+ |+.+..
T Consensus 34 ~p~~ls~npngr~v~V~g~geY----~iyt~~-~~r~k~----~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEY----EIYTAL-AWRNKA----FGSGLSFVWSS--RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEE----EEEETT-TTEEEE----EEE-SEEEE-T--SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCeeEEECCCCCEEEEEcCCEE----EEEEcc-CCcccc----cCceeEEEEec--CccEEEEECCCeEEEEEcCccccc
Confidence 46777777 7888888222221 122211 111111 23333333444 4444445558999995 665544
Q ss_pred -EEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 312 -LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 312 -~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.+++ |...--+....+++.-+++.|.+||.. |.++++.+-. .++.|+.|+||+++.=-|++
T Consensus 103 k~i~~-------~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-------~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 103 KSIKL-------PFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVS-------AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp ------------SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS--------E-EEEEE-TTSSEEEEE-S-
T ss_pred eEEcC-------CcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecC-------CCcEEEEECCCCEEEEEeCC
Confidence 3432 222222333677777788899999999 9999998732 36899999999999888877
No 285
>PHA02713 hypothetical protein; Provisional
Probab=83.21 E-value=72 Score=34.45 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=94.3
Q ss_pred EEEeCCEEEEEEecCCC--ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecC-----------------
Q 015220 239 IKISPGIMLLIFTKASG--HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN----------------- 299 (411)
Q Consensus 239 IkISdG~~Lai~q~t~~--~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~----------------- 299 (411)
+..-+|.+.+++-.... ...+-.+|..+.+=.. .-.++...--..+...++++++--+.
T Consensus 347 ~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 347 LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 33447887777765332 2347778888775332 21233333333466778888886532
Q ss_pred -------ceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec------CeEEEEecCC-c---eeeeeccccc
Q 015220 300 -------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN------RTVAVWNFRG-E---LVTSFEDHLL 361 (411)
Q Consensus 300 -------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd------~tI~iWn~~G-e---l~~s~e~H~~ 361 (411)
..+..||..+.+-..+++-......+-.++...+||+.+ .+ .+++.||+.- + .+.++..+..
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 358889999999888765443333333455567999998 32 3578999985 4 4455554443
Q ss_pred cCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 362 ~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
....+.+ ||.+.+.|.-+. ..++..+|+.|++
T Consensus 505 -----~~~~~~~--~~~iyv~Gg~~~--------~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 -----ALHTILH--DNTIMMLHCYES--------YMLQDTFNVYTYE 536 (557)
T ss_pred -----cceeEEE--CCEEEEEeeecc--------eeehhhcCccccc
Confidence 3444444 788888888654 2367777777765
No 286
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.00 E-value=46 Score=32.45 Aligned_cols=80 Identities=9% Similarity=0.063 Sum_probs=54.3
Q ss_pred ceeeEEEcccc-----eEEEeeccccCCCceEEEEee-ceeEEEEecCeEEEEecC-Cc-eeeeeccccccCCCCccceE
Q 015220 300 ENLQILDVRNF-----ELTEVSRTEFMTPSAFIFLYE-NQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNI 371 (411)
Q Consensus 300 ~~LkI~dL~t~-----e~~~v~~T~f~hpsAfifLy~-sqlFlSfsd~tI~iWn~~-Ge-l~~s~e~H~~~~~~c~~n~i 371 (411)
..|.++++.+. ++..+..+.+ +.++.++.. +..++...+++|.+|++. .+ +++ -.-+.. ..-.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~--~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~-~~~~~~-----~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV--KGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLK-KAFYDS-----PFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE--SS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEE-EEEE-B-----SSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEee--cCcceEhhhhCCEEEEeecCEEEEEEccCcccchh-hheecc-----eEEEE
Confidence 67999999995 6666766654 566766653 355777799999999999 55 333 222222 22455
Q ss_pred EEcCCCCEEEEEecCC
Q 015220 372 YITSDQDLIISYCKAD 387 (411)
Q Consensus 372 ~Is~Dqd~iiS~~~d~ 387 (411)
.|+.-+++|+.|...+
T Consensus 134 sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEETTEEEEEESSS
T ss_pred EEeccccEEEEEEccc
Confidence 6666688999888777
No 287
>PRK10115 protease 2; Provisional
Probab=82.17 E-value=89 Score=34.79 Aligned_cols=195 Identities=14% Similarity=0.207 Sum_probs=102.1
Q ss_pred CeEEeeCCCCeEEEeecCC----CeEEEE--EeeCc----eEEEEeccCce-eEEEEe-CCEEEEEEecCCCceeeEEEE
Q 015220 196 GFVEFDDVNGKVLTYSAQD----SIYKVF--DLKNY----TMLYSISDKNV-QEIKIS-PGIMLLIFTKASGHVPLKILS 263 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~d----s~ykVW--dL~~Y----s~iysLs~~~V-qeIkIS-dG~~Lai~q~t~~~ipiKIl~ 263 (411)
+.+.|- ++|+-+.|...+ -.++|| ++.+. .+|++=.++.. ..+..+ ||.++++....+....+-+++
T Consensus 175 ~~~~w~-~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 175 PSFVWA-NDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred eEEEEe-eCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence 457774 356666665442 125555 45554 25777444422 244555 888888888888778888888
Q ss_pred e--cCCcEEeEeeeccccCCcc-eeeeeecceeEEeec--Cc--eeeEEEccc-ceEEE-eeccccCCCceEEEEeecee
Q 015220 264 I--EDGTVLKSFNHLLHRNKKV-DFIEQFNEKLLVKQE--NE--NLQILDVRN-FELTE-VSRTEFMTPSAFIFLYENQL 334 (411)
Q Consensus 264 I--~tG~~L~t~~~LL~h~K~I-~FLE~~~ekllIKQe--~~--~LkI~dL~t-~e~~~-v~~T~f~hpsAfifLy~sql 334 (411)
. .+|+. .. ++.+..+. ...+..++.++|... .. +|-..++.+ ++... ++...-..-+.+. +..+.+
T Consensus 254 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~-~~~~~l 328 (686)
T PRK10115 254 AELADAEP-FV---FLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT-LFTDWL 328 (686)
T ss_pred CcCCCCCc-eE---EEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEE-EECCEE
Confidence 4 46663 22 33444333 345566677788773 23 444446652 32222 2221111112222 234577
Q ss_pred EEEE-ecCeEEEEec--CCceeeeec-cccccCCCCccceEEEc--CC-CCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 335 FLTF-RNRTVAVWNF--RGELVTSFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 335 FlSf-sd~tI~iWn~--~Gel~~s~e-~H~~~~~~c~~n~i~Is--~D-qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
+++. .++.-++|-+ .|..++.+. +. |.+. -.+-.+ +| ..++++++... .-+++-.+|..||
T Consensus 329 ~~~~~~~g~~~l~~~~~~~~~~~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~~ss~~-------~P~~~y~~d~~~~ 396 (686)
T PRK10115 329 VVEERQRGLTSLRQINRKTREVIGIAFDD----PAYV-TWIAYNPEPETSRLRYGYSSMT-------TPDTLFELDMDTG 396 (686)
T ss_pred EEEEEeCCEEEEEEEcCCCCceEEecCCC----CceE-eeecccCCCCCceEEEEEecCC-------CCCEEEEEECCCC
Confidence 7777 5666555544 444444443 21 1111 112234 33 45788888775 2257777777777
Q ss_pred e
Q 015220 408 T 408 (411)
Q Consensus 408 k 408 (411)
+
T Consensus 397 ~ 397 (686)
T PRK10115 397 E 397 (686)
T ss_pred c
Confidence 5
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.16 E-value=56 Score=34.73 Aligned_cols=139 Identities=12% Similarity=0.177 Sum_probs=68.7
Q ss_pred CCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
+|-.+.+++ ||+-++- +.++.|.+..-....--- .++-..-+=+++|- .|+.... + -|+|+.=-+++..+++
T Consensus 34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~--~G~g~~~vw~~~n~-yAv~~~~-~--~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKA--FGSGLSFVWSSRNR-YAVLESS-S--TIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEE--EEE-SEEEE-TSSE-EEEE-TT-S---EEEEETTEE-TT---
T ss_pred CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCcccc--cCceeEEEEecCcc-EEEEECC-C--eEEEEEcCccccceEE
Confidence 488888876 6665555 788999988833332211 12233333333555 3444442 2 2455422233333332
Q ss_pred eeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCC
Q 015220 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRG 350 (411)
Q Consensus 274 ~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~G 350 (411)
. -+...-.+|.+.+|.-.+++.|.+||+.+++.+. ..-..| +-.++-+ .-++.+ ++.++-|++.+-
T Consensus 106 ~------~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~---~i~v~~--vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 106 K------LPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIR---RIDVSA--VKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp --------SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEE---EESS-E---EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred c------CCcccceEEcCcEEEEECCCCEEEEEhhHcceee---EEecCC--CcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 2 1234566888888888888899999999998887 443333 3333433 334444 777888888876
Q ss_pred c
Q 015220 351 E 351 (411)
Q Consensus 351 e 351 (411)
+
T Consensus 175 ~ 175 (443)
T PF04053_consen 175 E 175 (443)
T ss_dssp H
T ss_pred h
Confidence 6
No 289
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.70 E-value=37 Score=33.30 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=91.9
Q ss_pred CCCeEEEeecCCCeEEEEEee--CceEEEEecc-CceeEEEEe-CCEEEEEEecCCCce---eeEE---EEec--CCcEE
Q 015220 203 VNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHV---PLKI---LSIE--DGTVL 270 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~--~Ys~iysLs~-~~VqeIkIS-dG~~Lai~q~t~~~i---piKI---l~I~--tG~~L 270 (411)
.++..++. +...++.||+|. .-+++.+.+- ..|..+.-| .|-.|++-...++.. .+.+ |... +.+++
T Consensus 27 g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 27 GPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred CCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 44566666 778889999999 4557777763 388888888 899999998888777 4444 2222 33333
Q ss_pred eEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecC-
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR- 349 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~- 349 (411)
.- -..||.-.--+-+...+. =|.+|+|- -..|..+-+=-.+.-++.++++++-+|.+.
T Consensus 106 ~v--RiaG~~v~~~~~~~~~~q-----------------leiiElPl--~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 106 RV--RIAGHRVTPSFNESSKDQ-----------------LEIIELPL--SEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EE--EEcccccccCCCCccccc-----------------eEEEEecC--CCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 31 134542222111111111 26777755 448999999999999999999999999998
Q ss_pred Cce------eeeeccccccC
Q 015220 350 GEL------VTSFEDHLLWH 363 (411)
Q Consensus 350 Gel------~~s~e~H~~~~ 363 (411)
+.. +-.||.++.++
T Consensus 165 ~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 165 QTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEEecccccEEechhhhhhe
Confidence 433 33777777653
No 290
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.64 E-value=4.7 Score=42.33 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=28.2
Q ss_pred ccceEEEcC----CCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 NTNNIYITS----DQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 ~~n~i~Is~----Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
....+.++. +++++++-|.|. +++|||+.||+|+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~----------~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDH----------TLRIWSLETGQCL 253 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTS----------EEEEEETTTTCEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCC----------eEEEEECCCCeEE
Confidence 456678888 999999999998 9999999999994
No 291
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.06 E-value=7.9 Score=36.95 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=47.9
Q ss_pred CCCcceeecccCCCC-eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEe----------------ccCceeEEEEe-C
Q 015220 182 AGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----------------SDKNVQEIKIS-P 243 (411)
Q Consensus 182 ~~~~LF~~~~l~~Pg-fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysL----------------s~~~VqeIkIS-d 243 (411)
+|+.+|-.-.|.+|- |+| .+|.-|..--.++.+.|||+++.+.+..- .+..|..+.|+ +
T Consensus 1 sGrrl~P~i~Lgs~~~~l~---~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~ 77 (219)
T PF07569_consen 1 SGRRLLPPIVLGSPVSFLE---CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN 77 (219)
T ss_pred CCccccCcEecCCceEEEE---eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC
Confidence 366677777788774 444 34555777889999999999999976443 33467777777 6
Q ss_pred CEEEEEEecC
Q 015220 244 GIMLLIFTKA 253 (411)
Q Consensus 244 G~~Lai~q~t 253 (411)
|+-|++....
T Consensus 78 G~PiV~lsng 87 (219)
T PF07569_consen 78 GVPIVTLSNG 87 (219)
T ss_pred CCEEEEEeCC
Confidence 7666555443
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=80.01 E-value=51 Score=30.55 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=113.5
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEeccCceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEe
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~ 271 (411)
|.=+-||+.+|..+......+.+..||..+.+.. ..+.+ .--+.+. +|.+++. +.... .++++.+|+...
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~-~~~~~----~~~d~~~g~~~~ 74 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVA-DSGGI----AVVDPDTGKVTV 74 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEE-ETTCE----EEEETTTTEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEE-EcCce----EEEecCCCcEEE
Confidence 3445688888999988888888888888887653 44444 5556665 5554444 43222 445999997665
Q ss_pred Eeeeccc--cCCcceeeeeeccee-EEeecC---------ceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEE
Q 015220 272 SFNHLLH--RNKKVDFIEQFNEKL-LVKQEN---------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTF 338 (411)
Q Consensus 272 t~~~LL~--h~K~I~FLE~~~ekl-lIKQe~---------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSf 338 (411)
-+...-+ .....+-+.+.+++- ++-+-+ ..|-.++.. ++...+ .+.+..|-...|-.-. .+|++=
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeecc
Confidence 4443111 345556677777774 454322 234455555 454443 3345556555554433 456555
Q ss_pred -ecCeEEEEecC--Cc-e-----eeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 339 -RNRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 339 -sd~tI~iWn~~--Ge-l-----~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
..+.|..++++ |. + +..+.+-.+ ....+++.+||.+.++..... .|.++|-. |++
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g-----~pDG~~vD~~G~l~va~~~~~----------~I~~~~p~-G~~ 216 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPG-----YPDGLAVDSDGNLWVADWGGG----------RIVVFDPD-GKL 216 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC-----EEEEEEEBTTS-EEEEEETTT----------EEEEEETT-SCE
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCc-----CCCcceEcCCCCEEEEEcCCC----------EEEEECCC-ccE
Confidence 56678778876 32 1 122222222 367899999999988766443 88888877 776
Q ss_pred e
Q 015220 410 K 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 217 ~ 217 (246)
T PF08450_consen 217 L 217 (246)
T ss_dssp E
T ss_pred E
Confidence 4
No 293
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=79.13 E-value=60 Score=35.81 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=100.4
Q ss_pred EeccCceeEEEEeCC---EEEEEEecCC--CceeeEEEEecCCcEEeEeeeccccCCcceee-eeecceeEE------ee
Q 015220 230 SISDKNVQEIKISPG---IMLLIFTKAS--GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI-EQFNEKLLV------KQ 297 (411)
Q Consensus 230 sLs~~~VqeIkISdG---~~Lai~q~t~--~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FL-E~~~ekllI------KQ 297 (411)
.|.-+.|+++.+||+ --||...+.. .---+.||.|.-++++++=++. .-..+++- ...++++++ |+
T Consensus 170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeec
Confidence 344468999999966 3345555544 4455789999999998864421 11122221 223444433 33
Q ss_pred -----cCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE---ecCeEEEEecCCceeeeeccccccCCCCccc
Q 015220 298 -----ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF---RNRTVAVWNFRGELVTSFEDHLLWHPDCNTN 369 (411)
Q Consensus 298 -----e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf---sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n 369 (411)
+-++|.|+++.-+ -+.|..-+.+-=--|-+=..+.-|.+. ..-++.+.|++|.++-. .|.-.-|
T Consensus 248 nKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~-------~Pe~~rN 319 (561)
T COG5354 248 NKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY-------FPEQKRN 319 (561)
T ss_pred ccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccceEEe-------cCCcccc
Confidence 3478899999843 334432222111223333355667776 58899999999996533 3555779
Q ss_pred eEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecc
Q 015220 370 NIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMF 406 (411)
Q Consensus 370 ~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~t 406 (411)
++..||.+..|+-..=|+ -.|.|-+||-..
T Consensus 320 T~~fsp~~r~il~agF~n-------l~gni~i~~~~~ 349 (561)
T COG5354 320 TIFFSPHERYILFAGFDN-------LQGNIEIFDPAG 349 (561)
T ss_pred cccccCcccEEEEecCCc-------cccceEEeccCC
Confidence 999999999999877775 348999998654
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=78.68 E-value=4 Score=42.62 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=49.7
Q ss_pred CCceEEEEeec---eeEEEEecCeEEEEecC-Cc---eeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCcccc
Q 015220 322 TPSAFIFLYEN---QLFLTFRNRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (411)
Q Consensus 322 hpsAfifLy~s---qlFlSfsd~tI~iWn~~-Ge---l~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~ 394 (411)
||.-.-.+-.+ +.|||-.+=.|-+||+. -+ -+....-|---..-=++++.-.+|.---.+-||..+
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk------- 243 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK------- 243 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC-------
Confidence 66555555444 88999999999999998 33 111222222212222566677777777788888887
Q ss_pred CCceEEEeeec
Q 015220 395 GNGKLFVSLLM 405 (411)
Q Consensus 395 ~~gtI~i~~i~ 405 (411)
|+|++-|+.
T Consensus 244 --G~Ikl~DlR 252 (460)
T COG5170 244 --GEIKLNDLR 252 (460)
T ss_pred --CcEEehhhh
Confidence 899998886
No 295
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=78.60 E-value=68 Score=31.79 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=62.4
Q ss_pred ceeEEEEe-CCEEEEEEecCCCc---------eeeEEEEecCCcEEeEeee---ccccCCcceeeeeec-------ceeE
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGH---------VPLKILSIEDGTVLKSFNH---LLHRNKKVDFIEQFN-------EKLL 294 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~---------ipiKIl~I~tG~~L~t~~~---LL~h~K~I~FLE~~~-------ekll 294 (411)
.|+.+.|- .|.|-++..+.-+. -=|-+|||+|+++++++.+ .+....-++-|.+.. ...+
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 47788886 88888887665222 2356789999999998773 333455666666666 3456
Q ss_pred Eeec-CceeeEEEcccceEEEeeccccCCCc--eEEEEe
Q 015220 295 VKQE-NENLQILDVRNFELTEVSRTEFMTPS--AFIFLY 330 (411)
Q Consensus 295 IKQe-~~~LkI~dL~t~e~~~v~~T~f~hps--AfifLy 330 (411)
|.-. +.-|-++|+.+++.++|... +++|. +..|..
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i 119 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTI 119 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEE
T ss_pred EeCCCcCcEEEEEccCCcEEEEecC-Ccceeccccceec
Confidence 7664 47899999999999997665 33444 455543
No 296
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=77.54 E-value=6.2 Score=22.94 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=17.2
Q ss_pred CCceEEEEeec---eeEEEE-ecCeEEEEe
Q 015220 322 TPSAFIFLYEN---QLFLTF-RNRTVAVWN 347 (411)
Q Consensus 322 hpsAfifLy~s---qlFlSf-sd~tI~iWn 347 (411)
|..++.++... +.++++ .|+++++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44455554433 566777 899999996
No 297
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.27 E-value=6 Score=41.56 Aligned_cols=28 Identities=18% Similarity=0.631 Sum_probs=22.6
Q ss_pred ceeEEEE-ecCeEEEEecC-Cceeeeeccc
Q 015220 332 NQLFLTF-RNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 332 sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H 359 (411)
..+++|. .|+++|+||+. |.++.+....
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4566677 99999999999 8887776554
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=76.75 E-value=9.5 Score=38.97 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=51.5
Q ss_pred eccccCCcce---eeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE--ecCeEEEEecC
Q 015220 275 HLLHRNKKVD---FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFR 349 (411)
Q Consensus 275 ~LL~h~K~I~---FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf--sd~tI~iWn~~ 349 (411)
+|+.|++||. |-.--+|+||..+|+..|=-||-.+ .||+. +...+..| |.
T Consensus 218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~------------------------~~l~i~~~~s~~s~W-Ls 272 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST------------------------TFLSISNQASVISSW-LS 272 (319)
T ss_pred HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC------------------------ceEEecCcccccccc-cc
Confidence 4566766654 4444578999999999998888655 22333 23466677 56
Q ss_pred CceeeeeccccccCCC--CccceEEEcCCCCEEEEEecCC
Q 015220 350 GELVTSFEDHLLWHPD--CNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 350 Gel~~s~e~H~~~~~~--c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
||++++.-+=-..-|+ =.+|+.-| =|+.+|+|+...
T Consensus 273 gD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~e 310 (319)
T KOG4714|consen 273 GDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAE 310 (319)
T ss_pred CCcccceEeeeccccccceeeeeeec--cCceEEeccccc
Confidence 8888873221111111 13444433 367888887765
No 299
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.07 E-value=21 Score=35.52 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=74.9
Q ss_pred ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEee-cCceeeEEEcccceEEEeeccccCCCceEEE----Ee
Q 015220 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF----LY 330 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQ-e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif----Ly 330 (411)
.--+-|++++||+...- .....++++...++++..|+- .+++|-++++.+++.+++ |..+.+..+.- +|
T Consensus 22 ~~~y~i~d~~~~~~~~l----~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPL----TPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEES----S-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES--ES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEEC----cCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEe--ccccceeEEcCccceec
Confidence 34577899999877663 222688999999998885444 678999999999988876 66652222211 22
Q ss_pred eceeEEEEecCeEEEEecCCceee--eeccccccCCCCccceEEEcCCCC-----EEEEEecCCCCCccccCCceEEEee
Q 015220 331 ENQLFLTFRNRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQD-----LIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 331 ~sqlFlSfsd~tI~iWn~~Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd-----~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+.++ |..+..--|.++|.-+. .+++..- -...-+..+++.. .-+-|-++- +.- ..=++.|+|
T Consensus 96 eEEv---~~~~~~~~WSpd~~~la~~~~d~~~v----~~~~~~~~~~~~~~yp~~~~~~YPk~G--~~n--p~v~l~v~~ 164 (353)
T PF00930_consen 96 EEEV---FDRRSAVWWSPDSKYLAFLRFDEREV----PEYPLPDYSPPDSQYPEVESIRYPKAG--DPN--PRVSLFVVD 164 (353)
T ss_dssp HHHT---SSSSBSEEE-TTSSEEEEEEEE-TTS-----EEEEEEESSSTESS-EEEEEE--BTT--S-----EEEEEEEE
T ss_pred cccc---cccccceEECCCCCEEEEEEECCcCC----ceEEeeccCCccccCCcccccccCCCC--CcC--CceEEEEEE
Confidence 2232 33344556777777433 5555443 1222233333322 233444433 221 224677788
Q ss_pred ecceee
Q 015220 404 LMFVTC 409 (411)
Q Consensus 404 i~tGk~ 409 (411)
+.+|+.
T Consensus 165 ~~~~~~ 170 (353)
T PF00930_consen 165 LASGKT 170 (353)
T ss_dssp SSSTCC
T ss_pred CCCCcE
Confidence 888874
No 300
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=75.74 E-value=94 Score=31.36 Aligned_cols=170 Identities=14% Similarity=0.069 Sum_probs=93.8
Q ss_pred CceEEEEeccC---ceeEEEE-eCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee-EEeec
Q 015220 224 NYTMLYSISDK---NVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQE 298 (411)
Q Consensus 224 ~Ys~iysLs~~---~VqeIkI-SdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe 298 (411)
+|+.+.+.+|+ --|-.-+ .||+ |.-+.+-..++.|..++++||+.+.... |+.+-==+=|.+.++++ .+-=.
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~--l~~~~FgEGit~~~d~l~qLTWk 108 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVP--LPPRYFGEGITILGDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEETTEEEEEESS
T ss_pred eeEEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEE--CCccccceeEEEECCEEEEEEec
Confidence 46777777766 6677777 5776 6778888899999999999999998744 33322112244455555 33337
Q ss_pred CceeeEEEcccceEEEeecccc-CCCceEEEEeeceeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCC
Q 015220 299 NENLQILDVRNFELTEVSRTEF-MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 376 (411)
Q Consensus 299 ~~~LkI~dL~t~e~~~v~~T~f-~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~D 376 (411)
++..-+||..+-+.+. +.- ..-=|=++-...+|++|=.+.++.++|+. -+.+++..=...-.|--..|-+=.= |
T Consensus 109 ~~~~f~yd~~tl~~~~---~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIG---TFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSEEEEEETTTTEEEE---EEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CCeEEEEccccceEEE---EEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 8888899999877765 211 01123334344466666666778888876 5555555444332333344433211 4
Q ss_pred CCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 377 QDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 377 qd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|.+..---..+ .|-.=|..||++.
T Consensus 185 G~IyANVW~td----------~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 185 GKIYANVWQTD----------RIVRIDPETGKVV 208 (264)
T ss_dssp TEEEEEETTSS----------EEEEEETTT-BEE
T ss_pred CEEEEEeCCCC----------eEEEEeCCCCeEE
Confidence 54433222222 5555666777653
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.09 E-value=45 Score=36.83 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=74.4
Q ss_pred cccCCcceeeee--ecceeEEeec-CceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecCeEEEEecC--
Q 015220 277 LHRNKKVDFIEQ--FNEKLLVKQE-NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-- 349 (411)
Q Consensus 277 L~h~K~I~FLE~--~~ekllIKQe-~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~tI~iWn~~-- 349 (411)
+++...|....+ .+|+..|.-. +.+|-|||..++|-.++...+ .-+-++.-+ .-++...|...++|-.+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----g~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----GNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----cceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 444444554433 4556667664 459999999999865543333 234445555 45888888888888766
Q ss_pred -CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 350 -Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|.. ++.+..-+. -+.-..|+|++..|.=+-.+. --+-+|+++|+.+||..
T Consensus 432 ngnv--~~idkS~~~---lItdf~~~~nsr~iAYafP~g------y~tq~Iklydm~~~Kiy 482 (668)
T COG4946 432 NGNV--RLIDKSEYG---LITDFDWHPNSRWIAYAFPEG------YYTQSIKLYDMDGGKIY 482 (668)
T ss_pred CCCe--eEecccccc---eeEEEEEcCCceeEEEecCcc------eeeeeEEEEecCCCeEE
Confidence 432 222222211 456788999999876433321 22359999999999963
No 302
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=74.05 E-value=22 Score=37.67 Aligned_cols=168 Identities=14% Similarity=0.234 Sum_probs=91.8
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCce--E-EEEeccC----ceeEEEEe---CCEEEEEEecCCCceeeEEEEecCCcE
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYT--M-LYSISDK----NVQEIKIS---PGIMLLIFTKASGHVPLKILSIEDGTV 269 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys--~-iysLs~~----~VqeIkIS---dG~~Lai~q~t~~~ipiKIl~I~tG~~ 269 (411)
+++.|+-...-+..|+++|+|-.+.=. . =|.+..+ .|+..++- +.-+.. ...|-+++
T Consensus 93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v------ea~prRv~------- 159 (433)
T KOG1354|consen 93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV------EASPRRVY------- 159 (433)
T ss_pred cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee------eeeeeeec-------
Confidence 567888888888899999999776521 1 1222222 22222221 000000 01122222
Q ss_pred EeEeeeccccCCcceeeeeeccee-EEeecCceeeEEEccc----ceEEEeecc------------ccCCCceEEEEeec
Q 015220 270 LKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRN----FELTEVSRT------------EFMTPSAFIFLYEN 332 (411)
Q Consensus 270 L~t~~~LL~h~K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t----~e~~~v~~T------------~f~hpsAfifLy~s 332 (411)
-=.|.=-|+.|-+-.|+. ++-..+=+|.+|||.- -.+.-|.++ +| ||.- .
T Consensus 160 ------aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEF-hp~~------c 226 (433)
T KOG1354|consen 160 ------ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEF-HPHH------C 226 (433)
T ss_pred ------cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhcc-CHhH------c
Confidence 124555677888888888 6666788999999864 222223333 33 5432 1
Q ss_pred eeEEEE-ecCeEEEEecCCc-eee----eeccccccC-------CCCccceEEEcCCCCEEEEEecCCCCCccccCCceE
Q 015220 333 QLFLTF-RNRTVAVWNFRGE-LVT----SFEDHLLWH-------PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKL 399 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~Ge-l~~----s~e~H~~~~-------~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI 399 (411)
..|+-= |.|+|++=|+|-. |+- -||.-..=. ---.+--|-.|..|.+|.|-.-- |+
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-----------tv 295 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-----------TV 295 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-----------ee
Confidence 344433 8899999999943 332 222211100 00023445567777777764333 99
Q ss_pred EEeee
Q 015220 400 FVSLL 404 (411)
Q Consensus 400 ~i~~i 404 (411)
++||+
T Consensus 296 k~wD~ 300 (433)
T KOG1354|consen 296 KLWDL 300 (433)
T ss_pred EEEec
Confidence 99998
No 303
>PHA03098 kelch-like protein; Provisional
Probab=73.61 E-value=1e+02 Score=32.25 Aligned_cols=153 Identities=11% Similarity=0.077 Sum_probs=85.1
Q ss_pred CCCeEEeeCCCCeEEEeecCC-----CeEEEEEeeCce--EEEEeccC-ceeEEEEeCCEEEEEEecCCC---ceeeEEE
Q 015220 194 WPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYT--MLYSISDK-NVQEIKISPGIMLLIFTKASG---HVPLKIL 262 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~d-----s~ykVWdL~~Ys--~iysLs~~-~VqeIkISdG~~Lai~q~t~~---~ipiKIl 262 (411)
.++.+-. +|++.+.++.+ ++..+||..+-+ .+-.+..- .-..+...+|.+.+++-...+ .-.+-.+
T Consensus 335 ~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~y 411 (534)
T PHA03098 335 NPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECF 411 (534)
T ss_pred cceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEE
Confidence 3444443 57888887764 345556665543 22222211 112223347777776653322 2446778
Q ss_pred EecCCcEEeEeeeccccCCcceeeeeecceeEEeecC---------ceeeEEEcccceEEEeeccccCCCceEEEEeece
Q 015220 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN---------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ 333 (411)
Q Consensus 263 ~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~---------~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq 333 (411)
|+.|++-..-. .++...--..+...+++++|--+. ..+.+||..+++...++........+..++...+
T Consensus 412 d~~t~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 412 SLNTNKWSKGS--PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNK 489 (534)
T ss_pred eCCCCeeeecC--CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCE
Confidence 88877543321 122222223456677888775432 2389999999998887654322222333455678
Q ss_pred eEEEEe------cCeEEEEecCCc
Q 015220 334 LFLTFR------NRTVAVWNFRGE 351 (411)
Q Consensus 334 lFlSfs------d~tI~iWn~~Ge 351 (411)
+|+.+. .+++.++|+..+
T Consensus 490 iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEEcCCcCCcccceeEEEeCCCC
Confidence 888872 257888887754
No 304
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=73.38 E-value=72 Score=33.88 Aligned_cols=187 Identities=18% Similarity=0.226 Sum_probs=105.1
Q ss_pred eeCCCCeEEE-------eecCCCeEEEEEeeC---ce------------EEEEec---------cC-ceeEEEEe---CC
Q 015220 200 FDDVNGKVLT-------YSAQDSIYKVFDLKN---YT------------MLYSIS---------DK-NVQEIKIS---PG 244 (411)
Q Consensus 200 FDd~NGkiLt-------~~~~ds~ykVWdL~~---Ys------------~iysLs---------~~-~VqeIkIS---dG 244 (411)
||++|.++|. .-+.|.+.|||==++ |. .++.-. ++ .|.|..+| +-
T Consensus 24 ~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnk 103 (404)
T KOG1409|consen 24 QDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNK 103 (404)
T ss_pred hhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhh
Confidence 6788877764 345689999995444 11 111111 11 56666666 22
Q ss_pred -EEEEEEecCCCceeeEEEEecCCcEEeEee------------ecccc------CCcceeeeeecceeEEeecCceeeEE
Q 015220 245 -IMLLIFTKASGHVPLKILSIEDGTVLKSFN------------HLLHR------NKKVDFIEQFNEKLLVKQENENLQIL 305 (411)
Q Consensus 245 -~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~------------~LL~h------~K~I~FLE~~~ekllIKQe~~~LkI~ 305 (411)
.++=.++..-.++..+|+++....++-+-. -.||| -.+.||... +-++-|.+.++-..
T Consensus 104 m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 104 MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL---YAFVGDHSGQITML 180 (404)
T ss_pred cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE---EEEecccccceEEE
Confidence 222233444477888999988766665311 11111 112233322 55666666666555
Q ss_pred EcccceEEEeeccccCCCceEEEEee---ceeEEEE-ecCeEEEEecCCceee--eeccccccCCCCccceEEEcCCCCE
Q 015220 306 DVRNFELTEVSRTEFMTPSAFIFLYE---NQLFLTF-RNRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDL 379 (411)
Q Consensus 306 dL~t~e~~~v~~T~f~hpsAfifLy~---sqlFlSf-sd~tI~iWn~~Gel~~--s~e~H~~~~~~c~~n~i~Is~Dqd~ 379 (411)
-+.-..+-.+ -|.-+|...+.++.- +++++|+ +|.++-+||.-|..-+ -+.+|.. ++..+---+--..
T Consensus 181 r~~~~~~~~i-~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~-----kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 181 KLEQNGCQLI-TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND-----KVQALSYAQHTRQ 254 (404)
T ss_pred EEeecCCceE-EEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh-----hhhhhhhhhhhee
Confidence 4433222111 156678888888874 4889999 9999999999977555 3445544 3333322222344
Q ss_pred EEEEecCCCCCccccCCceEEEeeec
Q 015220 380 IISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 380 iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
++|...| |.|-+||..
T Consensus 255 l~S~~ed----------g~i~~w~mn 270 (404)
T KOG1409|consen 255 LISCGED----------GGIVVWNMN 270 (404)
T ss_pred eeeccCC----------CeEEEEecc
Confidence 5665555 488888753
No 305
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=73.16 E-value=1.2e+02 Score=31.49 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=28.1
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec----cCceeEEE
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIK 240 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs----~~~VqeIk 240 (411)
+=.++|++ ...|+--.+|++++|+|+.... -|++. ..+|.|.+
T Consensus 83 iv~~~wt~--~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~ 129 (410)
T PF04841_consen 83 IVGMGWTD--DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECR 129 (410)
T ss_pred EEEEEECC--CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccc
Confidence 33566665 4555566799999999998666 44443 33555553
No 306
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=73.02 E-value=40 Score=38.69 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=66.1
Q ss_pred cCceeeEEEcccceEEEeeccccCCC-------ceEEEEeeceeEEEEecCeEEEEecC--CceeeeeccccccCCCCcc
Q 015220 298 ENENLQILDVRNFELTEVSRTEFMTP-------SAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNT 368 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~v~~T~f~hp-------sAfifLy~sqlFlSfsd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~ 368 (411)
+.++|--.||-+|++++-=.+..+-| +-|-=+...+.|+-.+++.+=-||+| |.-+..-+ +..|....+-
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-SKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-ccccccCCCc
Confidence 46788889999999986222222222 11111223478999999999999999 65444333 3446888888
Q ss_pred ceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 369 NNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
..++-|.+|.+.| ||++ |.|.++| ..|
T Consensus 581 s~~aTt~~G~iav-gs~~----------G~IRLyd-~~g 607 (794)
T PF08553_consen 581 SCFATTEDGYIAV-GSNK----------GDIRLYD-RLG 607 (794)
T ss_pred eEEEecCCceEEE-EeCC----------CcEEeec-ccc
Confidence 9999999998766 4544 5899998 344
No 307
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=72.61 E-value=14 Score=40.71 Aligned_cols=130 Identities=20% Similarity=0.186 Sum_probs=81.4
Q ss_pred EEeecCCCeEEEEEeEecCC-------CceeeeEeeehh-----hhhhCCCCCC-----CcceeecccCCCCeEEeeCCC
Q 015220 142 LFYNKNNDSLITVSVYASDN-------FSSLRCRSTRIE-----YIRRGKPDAG-----FALFESESLKWPGFVEFDDVN 204 (411)
Q Consensus 142 ifyN~~n~slI~vSv~~sd~-------~s~L~cr~~~~~-----~i~~gk~~~~-----~~LF~~~~l~~PgfvEFDd~N 204 (411)
+=||+.-.+|.++-...-|. =+.|+=-+|.-+ =.++|+.+.= ..=|.-+.==-|.=|-|=|.+
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence 44777777766653333333 134444444311 2245554222 112322222336666666666
Q ss_pred CeEEEeecC-----------------------CCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecC-CCc--e
Q 015220 205 GKVLTYSAQ-----------------------DSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKA-SGH--V 257 (411)
Q Consensus 205 GkiLt~~~~-----------------------ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t-~~~--i 257 (411)
|+++-..++ .+...|||..++++|-++...+=.-+.-| ||.++++...+ --+ -
T Consensus 303 ~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 303 GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecC
Confidence 665544433 78999999999999999998888888889 99999988776 222 2
Q ss_pred eeEEEEecCCcEEeE
Q 015220 258 PLKILSIEDGTVLKS 272 (411)
Q Consensus 258 piKIl~I~tG~~L~t 272 (411)
-+||||. ||.+++.
T Consensus 383 g~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 383 GIKIWHY-TGSLLHE 396 (566)
T ss_pred CeEEEEe-cCceeeh
Confidence 4899998 6777774
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=72.45 E-value=18 Score=39.55 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCC------Cce------eeEEEEecCCc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKAS------GHV------PLKILSIEDGT 268 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~------~~i------piKIl~I~tG~ 268 (411)
-++|+-|++.-+.+ +++|+-...-.+....+.+|.+.-+| .|..|.+-.... ..+ .+.|||+.+|.
T Consensus 41 SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~ 119 (561)
T COG5354 41 SPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM 119 (561)
T ss_pred cCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce
Confidence 35777776654444 78998888888899999999999999 666666544322 222 48999999999
Q ss_pred EEeEeeeccccCCc--ce-eeeeec-ceeEEeecCceeeEEEc
Q 015220 269 VLKSFNHLLHRNKK--VD-FIEQFN-EKLLVKQENENLQILDV 307 (411)
Q Consensus 269 ~L~t~~~LL~h~K~--I~-FLE~~~-ekllIKQe~~~LkI~dL 307 (411)
++.+|+ +++++ +. ++.-+- |++..-=-++.|.|+++
T Consensus 120 iv~sf~---~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 120 IVFSFN---GISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred eEeecc---ccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 999977 34444 44 444333 33322236777888886
No 309
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=71.89 E-value=72 Score=31.80 Aligned_cols=129 Identities=5% Similarity=0.144 Sum_probs=78.1
Q ss_pred ceeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceE
Q 015220 235 NVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL 312 (411)
Q Consensus 235 ~VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~ 312 (411)
.++.+... +|.++|+++...+..|-.++...-.. ....+.-+++. +.+.++..+ |+.
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~L~~~~----------G~~ 79 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDY----------DQGGIGGVTIL-DMIPLRDPD----------GQP 79 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeec----------cCCCccceEec-cceeccCCC----------CCc
Confidence 56667774 88999999988866555554433111 00011111111 111122211 222
Q ss_pred EEeeccccCCCceEEEEeeceeEEEE-ec------CeEEEEecCCceeeee---ccc-------cccCCCCccceEEEcC
Q 015220 313 TEVSRTEFMTPSAFIFLYENQLFLTF-RN------RTVAVWNFRGELVTSF---EDH-------LLWHPDCNTNNIYITS 375 (411)
Q Consensus 313 ~~v~~T~f~hpsAfifLy~sqlFlSf-sd------~tI~iWn~~Gel~~s~---e~H-------~~~~~~c~~n~i~Is~ 375 (411)
.. .....++++.+.....+|+++ .+ -.|.-.+.+|.+.+.+ ... ..+.+|=-...++++|
T Consensus 80 ~~---~~~~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 80 FP---KNGLDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred CC---cCCCChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECC
Confidence 22 233488888886666888888 66 6788888889988877 222 4566777788999999
Q ss_pred CCCEEEEEecCC
Q 015220 376 DQDLIISYCKAD 387 (411)
Q Consensus 376 Dqd~iiS~~~d~ 387 (411)
||..|+......
T Consensus 157 dG~~l~~~~E~~ 168 (326)
T PF13449_consen 157 DGRTLFAAMESP 168 (326)
T ss_pred CCCEEEEEECcc
Confidence 999777665543
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=70.79 E-value=17 Score=38.20 Aligned_cols=110 Identities=11% Similarity=0.169 Sum_probs=64.3
Q ss_pred Ccceeeeeeccee-EEeecCceeeEEEccc----ceEEEeeccc-----------cCCCceEEEEeeceeEEEE-ecCeE
Q 015220 281 KKVDFIEQFNEKL-LVKQENENLQILDVRN----FELTEVSRTE-----------FMTPSAFIFLYENQLFLTF-RNRTV 343 (411)
Q Consensus 281 K~I~FLE~~~ekl-lIKQe~~~LkI~dL~t----~e~~~v~~T~-----------f~hpsAfifLy~sqlFlSf-sd~tI 343 (411)
--|+.|-.-.|+. ++-..+=+|.+||+.- -.+.-|.++. -+||+.- .+|+-- +.|+|
T Consensus 173 yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c------n~fmYSsSkG~I 246 (460)
T COG5170 173 YHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC------NVFMYSSSKGEI 246 (460)
T ss_pred eEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc------ceEEEecCCCcE
Confidence 3456677777777 6666788899999864 2222233322 2255421 344433 88999
Q ss_pred EEEecC-Cce----eeeecccccc-------CCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 344 AVWNFR-GEL----VTSFEDHLLW-------HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 344 ~iWn~~-Gel----~~s~e~H~~~-------~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
.+-|+| ..| ...||..+.- .---.+--+-.|+.|.+|.|-.-- |++|||..--
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-----------tvkiwDvnm~ 311 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-----------TVKIWDVNMA 311 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-----------eEEEEecccc
Confidence 999999 333 2344433320 000123445667888888875544 8999997543
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.30 E-value=1e+02 Score=31.95 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=102.0
Q ss_pred cceehhhhccccceeeecccccEEEEEeC-CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC
Q 015220 105 RDIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (411)
Q Consensus 105 ~dii~~L~~sG~c~af~~~t~~~ic~lN~-s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~ 183 (411)
+-+|++-.|||.-.|-|..||+++=.-=- .--|. |-|. --||-.|-|+..-.=-| .=+..+-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~-----------sa~v-----vgdfVV~GCy~g~lYfl-~~~tGs~ 85 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIEC-----------SAIV-----VGDFVVLGCYSGGLYFL-CVKTGSQ 85 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeee-----------eeEE-----ECCEEEEEEccCcEEEE-Eecchhh
Confidence 57888999999999999999987642111 11111 1111 12333345544321111 0010111
Q ss_pred Ccceee-cccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEecc-------------CceeEEEEeCCEEEEE
Q 015220 184 FALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------------KNVQEIKISPGIMLLI 249 (411)
Q Consensus 184 ~~LF~~-~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~-------------~~VqeIkISdG~~Lai 249 (411)
.-.|+. +.++--.- .|++|-.+-...+|+++-+-|.++|.++|+..= +.=.=+++..|.+||+
T Consensus 86 ~w~f~~~~~vk~~a~---~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQ---CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred eeeeeehhhhccceE---EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 112332 22222222 455666666677899999999999999999651 1111223334444444
Q ss_pred EecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeee-ecceeEEeecCceeeEEEcccceEEEeeccccCCCc-eEE
Q 015220 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS-AFI 327 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~-~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hps-Afi 327 (411)
.-.+ ...=.+|--+-+.++-.--+-.++ .+.+ ..|+.++.=.-.-=|+|--.|+-++-+.+-.- ||+ -++
T Consensus 163 t~~~--~~~~~~w~~~~~~PiF~splcv~~-----sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s-~Ps~q~i 234 (354)
T KOG4649|consen 163 TKNP--YSSTEFWAATRFGPIFASPLCVGS-----SVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCES-RPSCQQI 234 (354)
T ss_pred ccCC--CCcceehhhhcCCccccCceeccc-----eEEEEEeccEEEEEcCCCcEEEeecCCCceecccccC-CCcceEE
Confidence 3222 112223333333333210000011 0111 23444444333337899888888877666554 677 566
Q ss_pred EEeeceeEEEE
Q 015220 328 FLYENQLFLTF 338 (411)
Q Consensus 328 fLy~sqlFlSf 338 (411)
++-...-|.+-
T Consensus 235 ~~~~~~Cf~~~ 245 (354)
T KOG4649|consen 235 SLENENCFCAP 245 (354)
T ss_pred EEecCCeEEEe
Confidence 66555555544
No 312
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=68.57 E-value=86 Score=27.86 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.1
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs 232 (411)
.+.+||......|+..++|..+|||+=. +.+++++
T Consensus 6 ~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~ 40 (111)
T PF14783_consen 6 CLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT 40 (111)
T ss_pred EEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe
Confidence 3678888888899999999999999633 4555555
No 313
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.50 E-value=11 Score=36.02 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=54.3
Q ss_pred cccccccccceEEEeeccceehhhhccccceeeecccccEEEEEeC---------------CCCceEEEEEeecCCCeEE
Q 015220 88 VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNV---------------TADEVIRSLFYNKNNDSLI 152 (411)
Q Consensus 88 ~l~~l~~RS~V~EIv~a~dii~~L~~sG~c~af~~~t~~~ic~lN~---------------s~~evIrsifyN~~n~slI 152 (411)
.+|+|.=-++|.=+-.-+.+++|++..|.+.+||-.+++ |.+.+ ....-|.++..+++..-||
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k--~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV 82 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGK--AVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIV 82 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCe--eccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence 378888889998888889999999999999999988877 55544 5667788888887777677
Q ss_pred EEE
Q 015220 153 TVS 155 (411)
Q Consensus 153 ~vS 155 (411)
+.|
T Consensus 83 ~ls 85 (219)
T PF07569_consen 83 TLS 85 (219)
T ss_pred EEe
Confidence 665
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.42 E-value=1.7e+02 Score=34.34 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=63.1
Q ss_pred CcceeecccC-CCCe----EEeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEeccC---ceeEEEEeCCEEEEEEecCC
Q 015220 184 FALFESESLK-WPGF----VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDK---NVQEIKISPGIMLLIFTKAS 254 (411)
Q Consensus 184 ~~LF~~~~l~-~Pgf----vEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~~---~VqeIkISdG~~Lai~q~t~ 254 (411)
+-||+-..+. -|.| +.=++.+|..++.+..++ +||=|...-.+ +..... .|+-+.+-+++.+++.-...
T Consensus 9 F~lFq~~~i~~~~~~~G~~isc~~s~~~~vvigt~~G--~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed 86 (933)
T KOG2114|consen 9 FSLFQWKEIPSLENFVGNAISCCSSSTGSVVIGTADG--RVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGED 86 (933)
T ss_pred eeeeeeeecCCcccCCCCceeEEcCCCceEEEeeccc--cEEEecccceeeehheecchhhhhHhhcccCceEEEEEeec
Confidence 4466654443 2222 334445555555555554 67777775433 554433 47777778886666655444
Q ss_pred ---CceeeEEEEecCC------cEEe---Eeeeccc-cCCcceeeeeecceeEEe
Q 015220 255 ---GHVPLKILSIEDG------TVLK---SFNHLLH-RNKKVDFIEQFNEKLLVK 296 (411)
Q Consensus 255 ---~~ipiKIl~I~tG------~~L~---t~~~LL~-h~K~I~FLE~~~ekllIK 296 (411)
|.+.+|||+++-- +++. -+.+..+ ..+|+-+|.++.+=.+|+
T Consensus 87 ~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv 141 (933)
T KOG2114|consen 87 EQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIV 141 (933)
T ss_pred CCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEE
Confidence 4567999999832 3331 1122333 357788888888744444
No 315
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=67.98 E-value=1.3e+02 Score=34.48 Aligned_cols=162 Identities=11% Similarity=0.113 Sum_probs=90.7
Q ss_pred CceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEe-ee-ccccCCcceeeeeecceeEEeecCce
Q 015220 224 NYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF-NH-LLHRNKKVDFIEQFNEKLLVKQENEN 301 (411)
Q Consensus 224 ~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~-~~-LL~h~K~I~FLE~~~ekllIKQe~~~ 301 (411)
-|++|-+|+.+||...++ .|..+||.....- .. .-....|+ +.++.+++-...+.
T Consensus 149 RySpL~qIn~~NV~~L~~-------------------aWt~~tGd~~~~~~~~~~~~e~TPl----vvgg~lYv~t~~~~ 205 (764)
T TIGR03074 149 RYSPLDQINPDNVGNLKV-------------------AWTYHTGDLKTPDDPGEATFQATPL----KVGDTLYLCTPHNK 205 (764)
T ss_pred ccCcccccCcccccCceE-------------------EEEEECCCccccccccccccccCCE----EECCEEEEECCCCe
Confidence 378898999888887665 3777777432100 00 00112232 34888999999999
Q ss_pred eeEEEcccceEEE-eeccccCCCceE------EEEe------------------eceeEEEEecCeEEEEecC-Cceeee
Q 015220 302 LQILDVRNFELTE-VSRTEFMTPSAF------IFLY------------------ENQLFLTFRNRTVAVWNFR-GELVTS 355 (411)
Q Consensus 302 LkI~dL~t~e~~~-v~~T~f~hpsAf------ifLy------------------~sqlFlSfsd~tI~iWn~~-Gel~~s 355 (411)
+..+|..||+..= ............ +.++ ...+|+.-.|+.+---|.+ |+++-+
T Consensus 206 V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~ 285 (764)
T TIGR03074 206 VIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCED 285 (764)
T ss_pred EEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEE
Confidence 9999999977543 211111110000 0111 2267776688888777887 998887
Q ss_pred eccc--cccCCC-Cc--------cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 356 FEDH--LLWHPD-CN--------TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 356 ~e~H--~~~~~~-c~--------~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
|..+ ..|+.+ .. +-.-.|. ++++|.|+.........+..|.|.=.|..|||++
T Consensus 286 fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~--~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 286 FGNNGTVDLTAGMGTTPPGYYYPTSPPLVA--GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred ecCCCceeeecccCcCCCcccccccCCEEE--CCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 6432 212110 01 1111222 3455556543211111134599999999999975
No 316
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=67.61 E-value=1.9e+02 Score=31.51 Aligned_cols=242 Identities=16% Similarity=0.151 Sum_probs=137.0
Q ss_pred eEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeE
Q 015220 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (411)
Q Consensus 138 vIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~y 217 (411)
+|-.|=|..|...| |-..|+ ++.+.-..+.+...|.-+.--|++----..==-.|||-.|-+ |-++..+++.
T Consensus 58 CiNAlqFS~N~~~L----~SGGDD---~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~-~~SG~~~~~V 129 (609)
T KOG4227|consen 58 CINALQFSHNDRFL----ASGGDD---MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF-LYSGERWGTV 129 (609)
T ss_pred ccceeeeccCCeEE----eecCCc---ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee-EecCCCccee
Confidence 34444444443343 335666 888888888887666544433443211000113689988865 4567779999
Q ss_pred EEEEeeCceEEEEeccCc----eeEEEEe--CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc
Q 015220 218 KVFDLKNYTMLYSISDKN----VQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 218 kVWdL~~Ys~iysLs~~~----VqeIkIS--dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e 291 (411)
..-|..+.+.||.-.+++ |--+..+ |.+|+. ..... -+-+|++-+.+-..+...+--.-|-.+..|-+++
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-~t~~~---~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-VTRAK---LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEE-EecCc---eEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999999988773 6555555 555433 33332 2456777766632222223333344445555555
Q ss_pred e---eEEeecCceeeEEEcccceEEE----------eeccccCCCceEEEEeeceeEEEEecC-eEEEEecCCce--eee
Q 015220 292 K---LLVKQENENLQILDVRNFELTE----------VSRTEFMTPSAFIFLYENQLFLTFRNR-TVAVWNFRGEL--VTS 355 (411)
Q Consensus 292 k---llIKQe~~~LkI~dL~t~e~~~----------v~~T~f~hpsAfifLy~sqlFlSfsd~-tI~iWn~~Gel--~~s 355 (411)
. |+++++.+-..+||.+.-.+-. -.+|+||.. .|--.-+-|++++-+ -=-.+|+.... |-.
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~---~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS---LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe---eeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 4 5777788888999998733211 113444321 111111446666333 33456666432 223
Q ss_pred ecccc-ccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 356 FEDHL-LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 356 ~e~H~-~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+.-.. +|---|.+++.-.--|-+ |.|||.+= -|.||-|-
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~----------~i~~WklP 322 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHW----------GIHIWKLP 322 (609)
T ss_pred ccCCCCcceeeeeeeeeeeeccee-eeccCccc----------ceEEEecC
Confidence 33222 554455556555555555 88898887 78999763
No 317
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=67.41 E-value=2.3e+02 Score=32.32 Aligned_cols=153 Identities=14% Similarity=0.327 Sum_probs=96.5
Q ss_pred EEeeCCCCeEEEeecCCCeEEEEEeeC--------------ceEEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEE
Q 015220 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN--------------YTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKI 261 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~ds~ykVWdL~~--------------Ys~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKI 261 (411)
|.|. .+++.++-.-+.|.+++||... .+.+|+ .-|.+.... +..|+.+.+..++..-.|+
T Consensus 135 Ik~~-~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys---~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL 210 (670)
T PF10395_consen 135 IKFS-SDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS---KFVNDFELENGKDLLLTVSQLSNSKLSYKL 210 (670)
T ss_pred EEEe-cCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh---hhhcccccccCCceEEEEEEcCCCcEEEEE
Confidence 5666 6777888888999999999911 112233 355666644 6677778887888899999
Q ss_pred EEe-cCCcEEeEee---eccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE-eeccccCCC---ceEEEEeec-
Q 015220 262 LSI-EDGTVLKSFN---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTP---SAFIFLYEN- 332 (411)
Q Consensus 262 l~I-~tG~~L~t~~---~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f~hp---sAfifLy~s- 332 (411)
+.| .+++...... +-..--+.-.|--+ ++.|-+=.+..|-+|++-+-+... ++-..+..+ +++.+...+
T Consensus 211 ~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~ 288 (670)
T PF10395_consen 211 ISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSP 288 (670)
T ss_pred EEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCC
Confidence 999 2333333322 11111122233333 455555588899999997755444 222322223 456665554
Q ss_pred -eeEEEEecCeEEEEecC-Cceeeeec
Q 015220 333 -QLFLTFRNRTVAVWNFR-GELVTSFE 357 (411)
Q Consensus 333 -qlFlSfsd~tI~iWn~~-Gel~~s~e 357 (411)
.++|| .+++|-+.|+. ..++.+++
T Consensus 289 nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 289 NRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 55555 57899999999 88999998
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=67.27 E-value=28 Score=36.85 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=63.5
Q ss_pred hhCCCCCCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceE---EEEeccC----cee--EEEEeCCEE
Q 015220 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDK----NVQ--EIKISPGIM 246 (411)
Q Consensus 176 ~~gk~~~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~---iysLs~~----~Vq--eIkISdG~~ 246 (411)
.+|+-....-||-.-++..=.-..|+ +.-|.++.=++.++.||++--++ +.+-.+| .-. -|+=+.|.+
T Consensus 285 nqG~~~~a~rlyh~Ssvtslq~Lq~s---~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 285 NQGNGWCAQRLYHDSSVTSLQILQFS---QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSI 361 (425)
T ss_pred ccCCCcceEEEEcCcchhhhhhhccc---cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceE
Confidence 55665555556655444443334444 45677788899999999999888 7666655 222 244458888
Q ss_pred EEEEecCCCceeeEEEEecCCcEEeEee
Q 015220 247 LLIFTKASGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 247 Lai~q~t~~~ipiKIl~I~tG~~L~t~~ 274 (411)
++++| --|..||+|++|.+|-+..
T Consensus 362 ~s~Gd----DcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 362 FSVGD----DCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred EEccC----eeEEEEEecccCceeeccC
Confidence 77554 5799999999999999854
No 319
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.22 E-value=95 Score=33.46 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=68.1
Q ss_pred eecceeEEeecCceeeEEEcccceEEE-eecccc--CCCce-------EEEEeeceeEEEEecCeEEEEecC-Cceeeee
Q 015220 288 QFNEKLLVKQENENLQILDVRNFELTE-VSRTEF--MTPSA-------FIFLYENQLFLTFRNRTVAVWNFR-GELVTSF 356 (411)
Q Consensus 288 ~~~ekllIKQe~~~LkI~dL~t~e~~~-v~~T~f--~hpsA-------fifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~ 356 (411)
+.++.+++...+..|..+|..||+..= .....- ..+.. =..++...+|+...++.+---|.. |+++-++
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 347788888888899999999986553 222111 11110 024555678887788888888887 9988655
Q ss_pred c--cccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 357 E--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 357 e--~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
. ++..... .+..-.|. ++ .+|.++... + ....|.|.-.|.+|||.+
T Consensus 147 ~~~~~~~~~~--~tssP~v~-~g-~Vivg~~~~--~--~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 147 KNGDYKAGYT--ITAAPLVV-KG-KVITGISGG--E--FGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred cccccccccc--ccCCcEEE-CC-EEEEeeccc--c--cCCCcEEEEEECCCCcee
Confidence 4 3321111 11122222 33 455554322 0 123489999999999975
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=66.46 E-value=21 Score=41.66 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=79.3
Q ss_pred cceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCc
Q 015220 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (411)
Q Consensus 290 ~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~ 367 (411)
++.++..---++|--+|+++.+..+. +.-..|.++|-=++++.|+.+ ..|+|.+-|++ -+.+-+|.-|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~--~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~------ 218 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRT--TNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG------ 218 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeee--eeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc------
Confidence 34444443445677889999887764 666677888888898999999 99999999999 788889999988
Q ss_pred cceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 368 TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 368 ~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
---.+.-.|.+||++.........+- .-=||+||+.+=+
T Consensus 219 -siSDfDv~GNlLitCG~S~R~~~l~~-D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 219 -SISDFDVQGNLLITCGYSMRRYNLAM-DPFVKVYDLRMMR 257 (1118)
T ss_pred -ceeeeeccCCeEEEeecccccccccc-cchhhhhhhhhhh
Confidence 23456678889998877753211110 0268999987644
No 321
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=66.33 E-value=20 Score=35.15 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=57.6
Q ss_pred eEEEcccceEEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecCC---ceeeeeccccccCCCCccceEEEcCCCCE
Q 015220 303 QILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (411)
Q Consensus 303 kI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~G---el~~s~e~H~~~~~~c~~n~i~Is~Dqd~ 379 (411)
++||++.-...+|-.+.. -|.++.+---.-||++-+..+|++|++.+ +++++|.-= + .+..+.-++-||.
T Consensus 1 ~v~~~H~F~sQ~v~~~~~-EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~-----~V~~l~y~~~GDY 73 (215)
T PF14761_consen 1 RVYNCHPFGSQNVVPCEQ-EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-G-----RVLQLVYSEAGDY 73 (215)
T ss_pred CeEEecccCCceeecccc-CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-h-----heeEEEeccccce
Confidence 467888877777766776 78888777556788888888999999983 366677654 3 3556677777999
Q ss_pred EEEEecCC
Q 015220 380 IISYCKAD 387 (411)
Q Consensus 380 iiS~~~d~ 387 (411)
|++==++.
T Consensus 74 lvTlE~k~ 81 (215)
T PF14761_consen 74 LVTLEEKN 81 (215)
T ss_pred EEEEEeec
Confidence 98864443
No 322
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=66.30 E-value=65 Score=31.96 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred CceeeEEEcccceEEE-eeccc-----cCCCceEEEEeeceeEEEEe--cCeEEEEecCCceeeee--ccc--cccCCCC
Q 015220 299 NENLQILDVRNFELTE-VSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSF--EDH--LLWHPDC 366 (411)
Q Consensus 299 ~~~LkI~dL~t~e~~~-v~~T~-----f~hpsAfifLy~sqlFlSfs--d~tI~iWn~~Gel~~s~--e~H--~~~~~~c 366 (411)
.+.|.++||.++++.+ ++-.. -+++.++. .....+|+... ..++-+-|.+|+.+.++ ..+ ..+...+
T Consensus 66 ~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~-~~~Dsi~l~~~~~~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~ 144 (333)
T PF13970_consen 66 SHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFF-QNLDSIFLFNSYAFPKLFLFNSQGEVLKKIDLEEEDLEFEPSEF 144 (333)
T ss_dssp --EEEEEETTTTEEEEEEE-BSSSTTB-TT---EE-ESSSTTSEEEEGGGTEEEEE-TT--EEEEEE---TTS-------
T ss_pred cceEEEEECCCCceeeeeeeeeECCCCccccccce-EcCCceEEEecCCcceEEEEcCCCeEEEEEecccCccccccccc
Confidence 4889999999999885 21111 23445454 33335555544 57799999999988844 333 2233333
Q ss_pred cc--ceEEEcCCCCEEEEEecCCCC-CccccCCceEEEeeecceeee
Q 015220 367 NT--NNIYITSDQDLIISYCKADSD-DPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 ~~--n~i~Is~Dqd~iiS~~~d~~~-~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.. ++.+..+|+.+.++-.--.+. ....+..=.+-+.|+.|+|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~ 191 (333)
T PF13970_consen 145 PSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVK 191 (333)
T ss_dssp BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EE
T ss_pred ccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEE
Confidence 33 567777888876665411111 111233324667788888764
No 323
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.70 E-value=34 Score=36.25 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=60.4
Q ss_pred eccccCCcceeeeeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEE---Eeec-----------------
Q 015220 275 HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIF---LYEN----------------- 332 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfif---Ly~s----------------- 332 (411)
-|.-...+++.|.+.|.+.|.+= .-..+-++|+.++...+|=+.+ ..|+.. +.+.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY---RdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY---RDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC---ccceEEEEEeecccccccccccccCCCCcc
Confidence 34456677889999999886655 5678999999999998864443 444443 3222
Q ss_pred eeEEEE---ecCeEEEEecC-Cceeeeecc
Q 015220 333 QLFLTF---RNRTVAVWNFR-GELVTSFED 358 (411)
Q Consensus 333 qlFlSf---sd~tI~iWn~~-Gel~~s~e~ 358 (411)
-+||.+ +-+.||||.++ |..+.+|.-
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 468877 78999999998 999998863
No 324
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=65.53 E-value=29 Score=35.96 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred ceeeEEEEecCCcEEeEeeeccccCCcce---eeeeecceeEEeecCceeeEEEcc-cceEEEeeccccCCCceEEEEee
Q 015220 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVD---FIEQFNEKLLVKQENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYE 331 (411)
Q Consensus 256 ~ipiKIl~I~tG~~L~t~~~LL~h~K~I~---FLE~~~ekllIKQe~~~LkI~dL~-t~e~~~v~~T~f~hpsAfifLy~ 331 (411)
.++.+.-.|++++-.+. |..|.= |=-+.|+=.+--.++..|..||++ .++.+. ...--|.+.+...+.
T Consensus 147 ~v~~t~~~le~vq~wk~------He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~--~n~kvH~~GV~SI~s 218 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKV------HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW--HNSKVHTSGVVSIYS 218 (339)
T ss_pred EEecceeeeeecccccc------cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee--ecceeeecceEEEec
Confidence 45677777777776552 222221 111223334566788999999999 333333 123348899999998
Q ss_pred c----eeEEEE-ecCeEEEEecC--Cceee
Q 015220 332 N----QLFLTF-RNRTVAVWNFR--GELVT 354 (411)
Q Consensus 332 s----qlFlSf-sd~tI~iWn~~--Gel~~ 354 (411)
| ...+|+ =|..|++||.| |+++.
T Consensus 219 s~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 219 SPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred CCCCCceEEEeccccceeeeehhcccCccc
Confidence 8 478899 78899999999 88764
No 325
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=64.96 E-value=61 Score=36.28 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=61.1
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe-CCEEEEEEecCCCcee--------eEEEEecCC
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVP--------LKILSIEDG 267 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS-dG~~Lai~q~t~~~ip--------iKIl~I~tG 267 (411)
||-+-..--+..+++. ++ +-.|-=.+|..+.-..|-.||=|-+| ..-.|.++.++.-..+ +-||||-||
T Consensus 215 yv~wSP~GTYL~t~Hk-~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHK-QG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEec-cc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 4444444334444443 33 67899999999999999999999999 7889999998887755 999999999
Q ss_pred cEEeEeee
Q 015220 268 TVLKSFNH 275 (411)
Q Consensus 268 ~~L~t~~~ 275 (411)
.+.++|.-
T Consensus 293 ~lkrsF~~ 300 (698)
T KOG2314|consen 293 LLKRSFPV 300 (698)
T ss_pred chhcceec
Confidence 99999874
No 326
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=64.33 E-value=15 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.8
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEEEE
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~ykVW 220 (411)
|.+|.-+-.| .+|.+.+.....+.+++|
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 999999999999988876
No 327
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=63.14 E-value=10 Score=39.95 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=43.2
Q ss_pred ecCeEEEEecC---CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecce
Q 015220 339 RNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFV 407 (411)
Q Consensus 339 sd~tI~iWn~~---Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tG 407 (411)
-.+.|..=.+. -.++++|.+|.. .+....=+|.+.+++||++|. +|-||||--+
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~-----~~~~l~Wd~~~~~LfSg~~d~----------~vi~wdigg~ 229 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTG-----EVTCLKWDPGQRLLFSGASDH----------SVIMWDIGGR 229 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCccc-----ceEEEEEcCCCcEEEeccccC----------ceEEEeccCC
Confidence 33444444443 348999999999 888999999999999999999 9999998543
No 328
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=62.94 E-value=2.2e+02 Score=30.63 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=99.4
Q ss_pred ecCCCeEEEEEeeCceE---EEEeccCceeEEEEe------------CCEEEEEEecC-CCceeeEEEEecCCcEEeEee
Q 015220 211 SAQDSIYKVFDLKNYTM---LYSISDKNVQEIKIS------------PGIMLLIFTKA-SGHVPLKILSIEDGTVLKSFN 274 (411)
Q Consensus 211 ~~~ds~ykVWdL~~Ys~---iysLs~~~VqeIkIS------------dG~~Lai~q~t-~~~ipiKIl~I~tG~~L~t~~ 274 (411)
...|.++|++|=+. +. |.+-+-.+|..+.-. .|+.+-..+++ |..-|+.-.+-+-++++..
T Consensus 116 a~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~-- 192 (445)
T KOG2139|consen 116 ATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQD-- 192 (445)
T ss_pred hccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeC--
Confidence 34577777776544 43 344444477665554 33333332222 2223333344444555554
Q ss_pred eccccCCcceeeeeecceeEEee---cCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEe
Q 015220 275 HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWN 347 (411)
Q Consensus 275 ~LL~h~K~I~FLE~~~ekllIKQ---e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn 347 (411)
=|| .+|.+|.=-+|+..+.. ++..|.|||+-++..+.+. +.-+-.|.-|--| -+|.+=-|++.++|+
T Consensus 193 --pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 193 --PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred --CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 244 89999999999985554 8899999999999988754 2344556555555 567777999999997
Q ss_pred cCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 348 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 348 ~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.+-.- |-|.-.+-.. .+.+..-||+|.+|.=.|...
T Consensus 267 e~q~w--t~erw~lgsg--rvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 267 ENQSW--TKERWILGSG--RVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred hcccc--eecceeccCC--ceeeeeecCCCCEEEEEEcCC
Confidence 76321 1111111111 567788899999876555444
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.15 E-value=1.1e+02 Score=33.61 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=54.6
Q ss_pred cccCCCceEEEEeecee---EEEE-ecCeEEEEecCCceeeeeccccccCCC----------Cc--cceEEEcCCCCEEE
Q 015220 318 TEFMTPSAFIFLYENQL---FLTF-RNRTVAVWNFRGELVTSFEDHLLWHPD----------CN--TNNIYITSDQDLII 381 (411)
Q Consensus 318 T~f~hpsAfifLy~sql---FlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~----------c~--~n~i~Is~Dqd~ii 381 (411)
+..+|-+-++.++++|- ++|. .+|-|+-|+..| .+.-.++.+.|.+- |. ...+-.||||..|-
T Consensus 139 fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred ecccccCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence 44457777777777744 6666 678899999998 44444554555433 32 23445566666665
Q ss_pred EEecCCCCCccccCCceEEEeeecceeee
Q 015220 382 SYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 382 S~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
--..|. +|.+++.+|||+.
T Consensus 218 tl~~Dr----------kVR~F~~KtGklv 236 (558)
T KOG0882|consen 218 TLNPDR----------KVRGFVFKTGKLV 236 (558)
T ss_pred ccCccc----------EEEEEEeccchhh
Confidence 555554 9999999999974
No 330
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=60.59 E-value=49 Score=34.51 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCC-----CcceeecccCCCCeEEeeCCCCeEE
Q 015220 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDDVNGKVL 208 (411)
Q Consensus 134 s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~-----~~LF~~~~l~~PgfvEFDd~NGkiL 208 (411)
++..-||-+|=.--.-+++. ++.+.+=+. -.++.+.+..+....+ .+...+..+.---.+||||+|....
T Consensus 10 g~~dTlHyvWs~~g~Ptvll--~~T~~~~s~---l~VnW~~lls~~~~~ai~v~p~~v~ys~A~vf~kL~EfnD~ndta~ 84 (350)
T PF15065_consen 10 GSNDTLHYVWSSIGAPTVLL--AHTNSPSSA---LNVNWSKLLSPNPSGAITVEPKPVQYSSALVFNKLIEFNDVNDTAN 84 (350)
T ss_pred CCCCeEEEEEecCCCCEEEE--EEcCCCccc---EEeeHHHhcCCCCCCCEEEccCCceEEEeeeeeeheeeeCCCCccc
Confidence 77888999998888889998 555555232 4577888887754333 1234445566677899999999999
Q ss_pred EeecCCCeEEEEEeeCce
Q 015220 209 TYSAQDSIYKVFDLKNYT 226 (411)
Q Consensus 209 t~~~~ds~ykVWdL~~Ys 226 (411)
...+..+-|.+.+|.++.
T Consensus 85 ~~~~~~~~~~~y~l~~f~ 102 (350)
T PF15065_consen 85 ISTPPGKFYPPYDLSNFS 102 (350)
T ss_pred ccCCCCCceeeeehhhce
Confidence 988888899999998876
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=60.31 E-value=1.8e+02 Score=28.68 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=64.9
Q ss_pred CCeEEeeCCCCeEEEeecCCCeEEEEEeeCce------EEEEec------c-CceeEEEEe--CCEEEEEEecCCCceee
Q 015220 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------MLYSIS------D-KNVQEIKIS--PGIMLLIFTKASGHVPL 259 (411)
Q Consensus 195 PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys------~iysLs------~-~~VqeIkIS--dG~~Lai~q~t~~~ipi 259 (411)
|.=|++-. ||+-++..-.++.+-++++.+.+ ..++++ + ..+--+... .+.++++ +.+-|.
T Consensus 67 ~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~----kE~~P~ 141 (248)
T PF06977_consen 67 YEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA----KERKPK 141 (248)
T ss_dssp EEEEEE-S-TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE----EESSSE
T ss_pred ceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE----eCCCCh
Confidence 33355533 34444444446677777772211 112221 2 247778887 3444444 245778
Q ss_pred EEEEecC---CcEEeEee--------eccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE---eecc------c
Q 015220 260 KILSIED---GTVLKSFN--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE---VSRT------E 319 (411)
Q Consensus 260 KIl~I~t---G~~L~t~~--------~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~---v~~T------~ 319 (411)
+|+.+.- +..+.... ..+-.-..+.|-...+.-+++-++++.|.++| .+|+... +.+. .
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~ 220 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKD 220 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS-
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccc
Confidence 8888874 33333211 01111233444555555678899999999999 7787655 3331 2
Q ss_pred cCCCceEEEEeeceeEEE
Q 015220 320 FMTPSAFIFLYENQLFLT 337 (411)
Q Consensus 320 f~hpsAfifLy~sqlFlS 337 (411)
+-+|+.+.|=....||++
T Consensus 221 ~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 221 IPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp --SEEEEEE-TT--EEEE
T ss_pred cCCccEEEECCCCCEEEE
Confidence 447888888443344443
No 332
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=60.00 E-value=50 Score=33.69 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=53.1
Q ss_pred EEEeec-eeEEEEecCeEEEEecC---CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 327 IFLYEN-QLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 327 ifLy~s-qlFlSfsd~tI~iWn~~---Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
+.+..+ ++++..+|..|+|-.-+ +..+..- ..+-.|++.=..++-|||+-+++.. +.+|+|.++
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kc--qVpkD~~PQWRkl~WSpD~tlLa~a----------~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKC--QVPKDPNPQWRKLAWSPDCTLLAYA----------ESTGTIRVF 70 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEE--ecCCCCCchheEEEECCCCcEEEEE----------cCCCeEEEE
Confidence 344444 55666699999999888 4455544 2456688888999999999999864 456899999
Q ss_pred eecceee
Q 015220 403 LLMFVTC 409 (411)
Q Consensus 403 ~i~tGk~ 409 (411)
|++..+|
T Consensus 71 dl~g~~l 77 (282)
T PF15492_consen 71 DLMGSEL 77 (282)
T ss_pred eccccee
Confidence 9997665
No 333
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=59.91 E-value=1.2e+02 Score=30.73 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=51.7
Q ss_pred ceeeeeecceeEEee----cCceeeEEEcccceEEE---eeccccCCCceEEEEeeceeE-EEEecCeEEEEecC-Ccee
Q 015220 283 VDFIEQFNEKLLVKQ----ENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYENQLF-LTFRNRTVAVWNFR-GELV 353 (411)
Q Consensus 283 I~FLE~~~ekllIKQ----e~~~LkI~dL~t~e~~~---v~~T~f~hpsAfifLy~sqlF-lSfsd~tI~iWn~~-Gel~ 353 (411)
-|=+|..+++.|+-+ +.+.|+.+|+.+|+..+ +++..| ..=+.+...++| ||-++++.-+||.+ -+++
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F---gEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF---GEGITILGDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc---ceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence 355666566677666 66799999999998654 666666 333455566775 55599999999998 8888
Q ss_pred eeecc-cccc
Q 015220 354 TSFED-HLLW 362 (411)
Q Consensus 354 ~s~e~-H~~~ 362 (411)
.+|.= ..+|
T Consensus 124 ~~~~y~~EGW 133 (264)
T PF05096_consen 124 GTFPYPGEGW 133 (264)
T ss_dssp EEEE-SSS--
T ss_pred EEEecCCcce
Confidence 86642 3666
No 334
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.66 E-value=30 Score=38.07 Aligned_cols=272 Identities=15% Similarity=0.204 Sum_probs=146.3
Q ss_pred ccccceeeec------ccccEEEEEeCCCCceEEEEEeecCC--------CeEEEEEeEecCCCceeeeE-eeehhhhhh
Q 015220 113 QSGVCAAFCR------ETNQRICFLNVTADEVIRSLFYNKNN--------DSLITVSVYASDNFSSLRCR-STRIEYIRR 177 (411)
Q Consensus 113 ~sG~c~af~~------~t~~~ic~lN~s~~evIrsifyN~~n--------~slI~vSv~~sd~~s~L~cr-~~~~~~i~~ 177 (411)
-+|.--||+| .+.--+-++|-.+.|.=|--|+-+.+ |.=|+||.-+.-|||.+.|- .+...-++-
T Consensus 88 pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~ 167 (668)
T COG4946 88 PDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKT 167 (668)
T ss_pred CCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCcee
Confidence 3455555533 22334557777777777766665443 34478899999999999884 344444444
Q ss_pred CCCCCC---CcceeecccC-------CCCeEEee-CCCCeEEEeecCCCeE-EEEEeeC--------ceEEEEeccC---
Q 015220 178 GKPDAG---FALFESESLK-------WPGFVEFD-DVNGKVLTYSAQDSIY-KVFDLKN--------YTMLYSISDK--- 234 (411)
Q Consensus 178 gk~~~~---~~LF~~~~l~-------~PgfvEFD-d~NGkiLt~~~~ds~y-kVWdL~~--------Ys~iysLs~~--- 234 (411)
.+||-| -.+|....++ -|-+-++- .+.|++-++.-...++ |+-||.+ ..-+|=|||+
T Consensus 168 e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~ 247 (668)
T COG4946 168 EPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGV 247 (668)
T ss_pred eeccCCceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCc
Confidence 555444 2344443221 12222221 2346666655555455 3456655 1234666655
Q ss_pred -ceeEEEEe--------------------CCEEEEEEecCCCceeeEEEEecCCcEEe-EeeeccccC-------Cccee
Q 015220 235 -NVQEIKIS--------------------PGIMLLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRN-------KKVDF 285 (411)
Q Consensus 235 -~VqeIkIS--------------------dG~~Lai~q~t~~~ipiKIl~I~tG~~L~-t~~~LL~h~-------K~I~F 285 (411)
|+-++-++ ||--+++ |... -|-++|=+|..+.+ .+.+.|-++ .|+.|
T Consensus 248 GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF-q~~G---dIylydP~td~lekldI~lpl~rk~k~~k~~~psky 323 (668)
T COG4946 248 GNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF-QNAG---DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY 323 (668)
T ss_pred cceEEeccCCchhhhcCCchhccccccCCCCcEEEE-ecCC---cEEEeCCCcCcceeeecCCccccccccccccCHHHh
Confidence 34333332 2322211 1111 12234444443333 111122221 23444
Q ss_pred ee----eecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec---eeEEEE-ecC-eEEEEecCCceeeee
Q 015220 286 IE----QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN---QLFLTF-RNR-TVAVWNFRGELVTSF 356 (411)
Q Consensus 286 LE----~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s---qlFlSf-sd~-tI~iWn~~Gel~~s~ 356 (411)
+| ..+|.+-+-+.|.- -|-+.+-+-.++|+ ++-.+-..-+. +-++-+ .|+ .+.|+|.+|-.+..+
T Consensus 324 ledfa~~~Gd~ia~VSRGka-Fi~~~~~~~~iqv~-----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~ 397 (668)
T COG4946 324 LEDFAVVNGDYIALVSRGKA-FIMRPWDGYSIQVG-----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI 397 (668)
T ss_pred hhhhccCCCcEEEEEecCcE-EEECCCCCeeEEcC-----CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe
Confidence 44 33444444443322 23344444444332 22222222222 446666 777 999999999999999
Q ss_pred ccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 357 e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
|.-++ ++-.+..|+||+.++.+- |+ +-|-+-||.||+.
T Consensus 398 e~~lg-----~I~av~vs~dGK~~vvaN-dr---------~el~vididngnv 435 (668)
T COG4946 398 EKDLG-----NIEAVKVSPDGKKVVVAN-DR---------FELWVIDIDNGNV 435 (668)
T ss_pred eCCcc-----ceEEEEEcCCCcEEEEEc-Cc---------eEEEEEEecCCCe
Confidence 99999 999999999999887653 32 4677778888875
No 335
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.53 E-value=8.4 Score=44.04 Aligned_cols=136 Identities=16% Similarity=0.256 Sum_probs=83.0
Q ss_pred EEEEeccCceeEEEEeCCE---EEEEEecCCCceeeEEEEec--CCcEEeEeeeccccCC---cceeeeeecceeEEeec
Q 015220 227 MLYSISDKNVQEIKISPGI---MLLIFTKASGHVPLKILSIE--DGTVLKSFNHLLHRNK---KVDFIEQFNEKLLVKQE 298 (411)
Q Consensus 227 ~iysLs~~~VqeIkISdG~---~Lai~q~t~~~ipiKIl~I~--tG~~L~t~~~LL~h~K---~I~FLE~~~ekllIKQe 298 (411)
.|.-|+.=+|.+++.|+.- .-+++...+.. -||+|- +.+-+ +|. |-||.. .|+|--|+++-+-.-+-
T Consensus 61 ~l~h~tpw~vad~qws~h~a~~~wiVsts~qka---iiwnlA~ss~~aI-ef~-lhghsraitd~n~~~q~pdVlatcsv 135 (1081)
T KOG0309|consen 61 WLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA---IIWNLAKSSSNAI-EFV-LHGHSRAITDINFNPQHPDVLATCSV 135 (1081)
T ss_pred eeeccCcchhcceecccCCCCceeEEecCcchh---hhhhhhcCCccce-EEE-EecCccceeccccCCCCCcceeeccc
Confidence 6677777788888888321 11222211111 133332 11100 111 223332 34555677777777788
Q ss_pred CceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEEecCeEEEEecC--CceeeeeccccccCCCCccceEE
Q 015220 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY 372 (411)
Q Consensus 299 ~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSfsd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~ 372 (411)
+.-.-+||+++-...--+-..|..-...+.+.+. .++++--.+-|.+|+++ |+++.++.+|.. .+|.+.
T Consensus 136 dt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-----~vn~~~ 208 (1081)
T KOG0309|consen 136 DTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-----SVNSID 208 (1081)
T ss_pred cccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccce-----eeehHH
Confidence 8889999999855544333444444555665555 67777778899999999 779999999988 777664
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.34 E-value=40 Score=36.23 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=71.0
Q ss_pred ccccCCcceee--eeecce-eEEeecCceeeEEEcccceEEEeeccccCC-CceEEE--Eeec-eeEEEEecCeEEEEec
Q 015220 276 LLHRNKKVDFI--EQFNEK-LLVKQENENLQILDVRNFELTEVSRTEFMT-PSAFIF--LYEN-QLFLTFRNRTVAVWNF 348 (411)
Q Consensus 276 LL~h~K~I~FL--E~~~ek-llIKQe~~~LkI~dL~t~e~~~v~~T~f~h-psAfif--Ly~s-qlFlSfsd~tI~iWn~ 348 (411)
+.++.+-|.=| ..++++ +.++|-+++|+|.|+.++-... +...+ +-|=.+ +.+. -||.-..+|.|-|+|.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 44444444433 455666 4899999999999999987765 33322 222222 4444 4455559999999999
Q ss_pred C-C-ceeeeeccccccCCCCcc----ceEEEcCCCCEEEEEecCC
Q 015220 349 R-G-ELVTSFEDHLLWHPDCNT----NNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 349 ~-G-el~~s~e~H~~~~~~c~~----n~i~Is~Dqd~iiS~~~d~ 387 (411)
+ - .++..|.+.+.-+|-|.+ -| .|.+-|-+++..+.+-
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n-~~f~~gglLv~~lt~l 309 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPN-KIFTSGGLLVFALTVL 309 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCcc-ccccccceEEeeehhh
Confidence 9 3 377788876666665531 12 6777788888777664
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=57.57 E-value=30 Score=36.07 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=49.6
Q ss_pred EEeeCCCCeEEEeecC---------CCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecC
Q 015220 198 VEFDDVNGKVLTYSAQ---------DSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (411)
Q Consensus 198 vEFDd~NGkiLt~~~~---------ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~t 266 (411)
+-++..+++.-+---+ -..+=|+|+++-+.++.|. ++++..|.+| |..=++..-.. ....|.|+|..|
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~t 321 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAAT 321 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcC
Confidence 4566666665442211 2346678999999999999 4588899999 55544433222 336789999999
Q ss_pred CcEEeEee
Q 015220 267 GTVLKSFN 274 (411)
Q Consensus 267 G~~L~t~~ 274 (411)
|+++++..
T Consensus 322 Gk~~~~~~ 329 (342)
T PF06433_consen 322 GKLVRSIE 329 (342)
T ss_dssp --EEEEE-
T ss_pred CcEEeehh
Confidence 99999955
No 338
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.40 E-value=82 Score=37.60 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=42.0
Q ss_pred CCCCeEEEeecCCCeEEEEEeeCceEEEEeccC------ceeEEEEeCCEEEEEEecCC
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------NVQEIKISPGIMLLIFTKAS 254 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~------~VqeIkISdG~~Lai~q~t~ 254 (411)
..||+.|+.+-++|.++|||+.+-+.+..|+.. =++-.+.|++..++..+.-.
T Consensus 139 n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 139 NQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred cCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCC
Confidence 479999999999999999999999999888865 34455566777666666555
No 339
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=51.71 E-value=2.6e+02 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.616 Sum_probs=28.9
Q ss_pred CCCceEEEEeeceeEEEEecCeEEEEecC-Cceeeeeccc
Q 015220 321 MTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDH 359 (411)
Q Consensus 321 ~hpsAfifLy~sqlFlSfsd~tI~iWn~~-Gel~~s~e~H 359 (411)
+.|.++.+. ....+.+.++-|+||++. |+++.++.++
T Consensus 244 ~~p~~~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~~~ 281 (302)
T smart00036 244 FMPESFAYH--SPYLLAFHDNGIEIRSIKTGELLQELADR 281 (302)
T ss_pred CcccEEEEE--CCEEEEEcCCcEEEEECCCCceEEEEecC
Confidence 356665543 477777889999999999 9999999874
No 340
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=51.23 E-value=11 Score=41.19 Aligned_cols=44 Identities=14% Similarity=0.044 Sum_probs=39.1
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceee
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~ 409 (411)
.|...|++|.+ -+|+|---..||.|+|||.|+ .|-+||-.+|+-
T Consensus 133 ~l~~kL~~H~G-----cVntV~FN~~Gd~l~SgSDD~----------~vv~WdW~~~~~ 176 (559)
T KOG1334|consen 133 RLQKKLNKHKG-----CVNTVHFNQRGDVLASGSDDL----------QVVVWDWVSGSP 176 (559)
T ss_pred hhhhcccCCCC-----ccceeeecccCceeeccCccc----------eEEeehhhccCc
Confidence 46668888988 789999999999999999999 999999888764
No 341
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.99 E-value=1.7e+02 Score=32.81 Aligned_cols=124 Identities=16% Similarity=0.247 Sum_probs=80.8
Q ss_pred CceeeEEEEecCCcEEeEeeeccccCCcceeeee---------ecceeEEeecCceeeEEEcccceE---EEeeccccCC
Q 015220 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ---------FNEKLLVKQENENLQILDVRNFEL---TEVSRTEFMT 322 (411)
Q Consensus 255 ~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~---------~~ekllIKQe~~~LkI~dL~t~e~---~~v~~T~f~h 322 (411)
++--|+=+|||.|+++-+-.+ + ++|....+ ..+.-||-=.++.+==||.+=... --+---.|-.
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~--~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKF--E--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred CcCcceeeecccceeeeEeec--c--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 335577899999999987552 2 23443333 345556666778888888874222 1112233445
Q ss_pred CceEEEEeec--eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 323 PSAFIFLYEN--QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 323 psAfifLy~s--qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
..-|-|.++. ..-+.+ .+|.||+|+.-|-.-.|.---++ -.++.|-.|.||+.|+.-|+.
T Consensus 430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG----~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLG----DAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccC----CceeeEEeeccCcEEEEeccc
Confidence 5667777765 344444 78899999887665444433344 278999999999999999986
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=49.82 E-value=3e+02 Score=28.10 Aligned_cols=183 Identities=12% Similarity=0.150 Sum_probs=128.4
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEec-cCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVL 270 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs-~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L 270 (411)
.+|.=+-.++...++.+.....+.+.|.|+.+++.+.++. ...-+.+.++ +|.++-+.+....-..+-+++-.|++++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 6788889999999999999999999999999999998887 5588999999 8888888888766677788999999999
Q ss_pred eEeeeccccCCcceeeeeecc--eeEEee-cCceeeEEEcccceEEEeec-----cccCCCceEEEE--eeceeEEEEec
Q 015220 271 KSFNHLLHRNKKVDFIEQFNE--KLLVKQ-ENENLQILDVRNFELTEVSR-----TEFMTPSAFIFL--YENQLFLTFRN 340 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~e--kllIKQ-e~~~LkI~dL~t~e~~~v~~-----T~f~hpsAfifL--y~sqlFlSfsd 340 (411)
.+ . ..|. .| .=+++.++ ++++.. .++.|.+.|..+...++ +. ..+.-| +.+.+ ..+..|++...
T Consensus 154 ~~-~-~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 AT-I-PVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP-AGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EE-E-ecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCC-ceEEECCCCCEEEEEecc
Confidence 98 2 2333 34 22444443 456666 78889999988887774 11 222223 34444 34468888844
Q ss_pred ---CeEEEEecC-Cceeee-eccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 341 ---RTVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 341 ---~tI~iWn~~-Gel~~s-~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
+++.+-|.. +..+.+ ..--.+ .--.+..+|||..+......
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-----~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-----APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-----CCCceeECCCCCEEEEEecC
Confidence 599999988 444443 222111 12357788888877666433
No 343
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=48.46 E-value=83 Score=34.68 Aligned_cols=180 Identities=20% Similarity=0.172 Sum_probs=115.6
Q ss_pred CCCCeE---EeeCCCCeEEEeecCCCeEEEEEeeCceEE-EEeccC-------------ceeEEEEe--CCEEEEEEecC
Q 015220 193 KWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDK-------------NVQEIKIS--PGIMLLIFTKA 253 (411)
Q Consensus 193 ~~Pgfv---EFDd~NGkiLt~~~~ds~ykVWdL~~Ys~i-ysLs~~-------------~VqeIkIS--dG~~Lai~q~t 253 (411)
+|||-| .|. -.|-+|+++++|..+-|||-...+.. .=.+++ ..+.|..| ||++=.-..
T Consensus 140 ~H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i-- 216 (559)
T KOG1334|consen 140 KHKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI-- 216 (559)
T ss_pred CCCCccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee--
Confidence 577764 454 45889999999999999999987754 333433 23344444 555322111
Q ss_pred CCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecc---eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEe
Q 015220 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE---KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY 330 (411)
Q Consensus 254 ~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e---kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy 330 (411)
++||.+..+-. +-.|.-+|+-+++-++ .++=..|+...+=+||+.+-....--+.-.++...+-||
T Consensus 217 ----------~~t~~~e~t~r-l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 217 ----------LETGYVENTKR-LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred ----------ccccceeccee-cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 34555554422 4566677776666554 345677888999999999877663336666666555554
Q ss_pred ec-------eeEEEE-ecCeEEEEecC---Cce----eee-eccccccCCCCccceEEEc-CCCCEEEEEecC
Q 015220 331 EN-------QLFLTF-RNRTVAVWNFR---GEL----VTS-FEDHLLWHPDCNTNNIYIT-SDQDLIISYCKA 386 (411)
Q Consensus 331 ~s-------qlFlSf-sd~tI~iWn~~---Gel----~~s-~e~H~~~~~~c~~n~i~Is-~Dqd~iiS~~~d 386 (411)
.- ..|.++ +|.-.++||-+ .+. +-+ .-.|+......++.-+.-| .-+++++||...
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence 21 467777 99999999977 442 223 3456665566667777777 677899998654
No 344
>PHA02790 Kelch-like protein; Provisional
Probab=47.76 E-value=3.6e+02 Score=28.44 Aligned_cols=146 Identities=11% Similarity=0.050 Sum_probs=85.1
Q ss_pred CCCeEEEeecCC--CeEEEEEeeC--ceEEEEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 203 VNGKVLTYSAQD--SIYKVFDLKN--YTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 203 ~NGkiLt~~~~d--s~ykVWdL~~--Ys~iysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
.+|++-+.++.+ ++...||..+ .+.+-.+... .-..+...+|.+.+++-.......+-.+|..+++=.. .-.+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCC
Confidence 456777766643 3344455433 2333344322 1123344488877876654443456677777664333 2223
Q ss_pred ccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec-----CeEEEEecCCc
Q 015220 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN-----RTVAVWNFRGE 351 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd-----~tI~iWn~~Ge 351 (411)
+....--.+...+++|++--+ ...+||..+++-..+++-......+-.++..++||+.| .+ ++++.||+.-+
T Consensus 395 ~~~r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVGR--NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCccccceEEEECCEEEEECC--ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 222222356778888888754 36789999998888765443333444455667999998 33 57888888744
Q ss_pred e
Q 015220 352 L 352 (411)
Q Consensus 352 l 352 (411)
-
T Consensus 473 ~ 473 (480)
T PHA02790 473 S 473 (480)
T ss_pred e
Confidence 3
No 345
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=46.98 E-value=1.7e+02 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=26.8
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
-+|+|--.+||++|||.=.-. +|-+-|-.||+.+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~----------~i~~I~~~tG~I~ 178 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTS----------TIYKIDPSTGKII 178 (299)
T ss_pred EeeeeeecCCccEEEEecccC----------EEEEEECCCCcEE
Confidence 688999999999999976665 7777777777654
No 346
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.37 E-value=62 Score=33.26 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=48.3
Q ss_pred CCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEE
Q 015220 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLI 249 (411)
Q Consensus 193 ~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai 249 (411)
.|=|-|-|++-.+.+.++++-.+++-|||..+..++-+..=.++.-+...++.|++.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~f~~s 273 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDGFLVS 273 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCceEEe
Confidence 566789999988999999999999999999999999888877888888875555443
No 347
>PHA03098 kelch-like protein; Provisional
Probab=44.79 E-value=3.9e+02 Score=27.99 Aligned_cols=194 Identities=8% Similarity=0.009 Sum_probs=97.4
Q ss_pred CCCeEEEeecCCC------eEEEEEeeCceEEEEecc----CceeEEEEeCCEEEEEEecCCC--ceeeEEEEecCCcEE
Q 015220 203 VNGKVLTYSAQDS------IYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASG--HVPLKILSIEDGTVL 270 (411)
Q Consensus 203 ~NGkiLt~~~~ds------~ykVWdL~~Ys~iysLs~----~~VqeIkISdG~~Lai~q~t~~--~ipiKIl~I~tG~~L 270 (411)
.++++.+.++.++ .+-.||..+.+- ..++. ..-..+..-+|.+.+++-...+ ...+-.|+..+++-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3456666665432 334455544332 22221 1122233336776666654322 223556777777643
Q ss_pred eEeeeccccCCcceeeeeecceeEEeec----C---ceeeEEEcccceEEEeeccccCCCceEEEEeeceeEEEE-ec--
Q 015220 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQE----N---ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-RN-- 340 (411)
Q Consensus 271 ~t~~~LL~h~K~I~FLE~~~ekllIKQe----~---~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd-- 340 (411)
... .++...--......++++++--+ + ..+..||..+++-..+++.-.....+-.+.+.+++|+.+ .+
T Consensus 372 ~~~--~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEP--PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eCC--CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 321 22222222345667788877543 1 468899999988877543221111222344566888887 32
Q ss_pred ------CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeeccee
Q 015220 341 ------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVT 408 (411)
Q Consensus 341 ------~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk 408 (411)
+.+.+||+.-+--+.+.. +. .|-.....+ .-++.+.|-|..+.. ....++-++|..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~-~~-~~r~~~~~~--~~~~~iyv~GG~~~~-----~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSS-LN-FPRINASLC--IFNNKIYVVGGDKYE-----YYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCC-CC-cccccceEE--EECCEEEEEcCCcCC-----cccceeEEEeCCCCE
Confidence 248888887332222211 00 111111122 237777776655431 113578888887764
No 348
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=44.47 E-value=42 Score=35.36 Aligned_cols=68 Identities=25% Similarity=0.422 Sum_probs=36.4
Q ss_pred CCCCeEEEeecCCCeEEEEEeeC-ceEE--EEeccC-ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecc
Q 015220 202 DVNGKVLTYSAQDSIYKVFDLKN-YTML--YSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (411)
Q Consensus 202 d~NGkiLt~~~~ds~ykVWdL~~-Ys~i--ysLs~~-~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL 277 (411)
+..|++|+++..+++|-||+-+. +..+ +.|.+. .+-.+.=+||+-+ .+ ..|
T Consensus 269 ~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i~~~~~idg~~eTDG~~v-----------------------~s--~~l 323 (381)
T PF02333_consen 269 DGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRIGDGGGIDGVSETDGIEV-----------------------VS--VPL 323 (381)
T ss_dssp CC-EEEEEEEGGGTEEEEEESSTT--EEEEEEEE--SSS----S---EEE-----------------------E---S--
T ss_pred CCCeEEEEEcCCCCeEEEEecCCCCcccceEEeccCCCccccccCCcceE-----------------------Ec--CcC
Confidence 45789999999999999999875 5433 555533 2323333466531 11 123
Q ss_pred ccCCcceeeeeecceeEEeecCcee
Q 015220 278 HRNKKVDFIEQFNEKLLVKQENENL 302 (411)
Q Consensus 278 ~h~K~I~FLE~~~ekllIKQe~~~L 302 (411)
| ..|+.+||+.|.++|+
T Consensus 324 G--------~~fp~Gl~VvqDg~n~ 340 (381)
T PF02333_consen 324 G--------PAFPQGLFVVQDGRNI 340 (381)
T ss_dssp S--------TT-TT-EEEEEESSEE
T ss_pred C--------CCCCCceEEEecCCcC
Confidence 3 3578899999988874
No 349
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=42.94 E-value=1.2e+02 Score=32.27 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=85.8
Q ss_pred EEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEE---eecCceeeEEEcccceEEE
Q 015220 239 IKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV---KQENENLQILDVRNFELTE 314 (411)
Q Consensus 239 IkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllI---KQe~~~LkI~dL~t~e~~~ 314 (411)
.++| +|..+|....- -+-|=|-+|-|++.-|.- -.+|+.||=.-|+..| .....++|+|+|.--|-++
T Consensus 14 c~fSp~g~yiAs~~~y----rlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY----RLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred eeECCCCCeeeeeeee----EEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 4566 77777765543 455566777776665432 3678889988888744 5688899999999988887
Q ss_pred eeccccCCCceEEEEeec----eeEEEE-ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEE
Q 015220 315 VSRTEFMTPSAFIFLYEN----QLFLTF-RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (411)
Q Consensus 315 v~~T~f~hpsAfifLy~s----qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~ 383 (411)
....-|......--| +|++|- =+-.|.||.+.- +---|+ =||-.+.+-++.++||++..-.
T Consensus 86 ---kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t----~~~~~~-~~pK~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 86 ---KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT----QKGYLL-PHPKTNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred ---EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc----ceeEEe-cccccCceeEEECCCCceeeee
Confidence 344344444443333 677766 566889997652 212233 3677778999999999986433
No 350
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=42.48 E-value=1e+02 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCeEEEeecCCCeEEEEEeeCceEEEEec
Q 015220 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (411)
Q Consensus 204 NGkiLt~~~~ds~ykVWdL~~Ys~iysLs 232 (411)
++++.+++..++++-++|.++++.+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 45578888889999999999998887766
No 351
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.91 E-value=3.8e+02 Score=26.73 Aligned_cols=221 Identities=16% Similarity=0.118 Sum_probs=121.0
Q ss_pred eeccceehhhhccccceeeecccccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCC
Q 015220 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (411)
Q Consensus 102 v~a~dii~~L~~sG~c~af~~~t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~ 181 (411)
+.+++.|++.+..|...|+|..||+.+ .+. .+.-
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~---------------W~~---~~~~---------------------------- 98 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVK---------------WSY---PLLG---------------------------- 98 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEE---------------ecc---cCcC----------------------------
Confidence 556788888888898888888888854 100 0000
Q ss_pred CCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCc---e-eEEEEeCCEEEEEEecCCCce
Q 015220 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN---V-QEIKISPGIMLLIFTKASGHV 257 (411)
Q Consensus 182 ~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~---V-qeIkISdG~~Lai~q~t~~~i 257 (411)
....+.-|-++. +|++++.. .++.|-++|..+.+++.+-+... + ....+.+|.++... ..-
T Consensus 99 ------~~~~~~~~~~~~----~G~i~~g~-~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s----~~g 163 (370)
T COG1520 99 ------AVAQLSGPILGS----DGKIYVGS-WDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT----DDG 163 (370)
T ss_pred ------cceeccCceEEe----CCeEEEec-ccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec----CCC
Confidence 123334444444 67755533 34467777777777664444333 2 22233355544333 223
Q ss_pred eeEEEEecCCcEEeEeeec-----cccCCcceeeeeecceeEEeec--CceeeEEEcccceEEEe---eccccCC----C
Q 015220 258 PLKILSIEDGTVLKSFNHL-----LHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEV---SRTEFMT----P 323 (411)
Q Consensus 258 piKIl~I~tG~~L~t~~~L-----L~h~K~I~FLE~~~ekllIKQe--~~~LkI~dL~t~e~~~v---~~T~f~h----p 323 (411)
-+--++-.||+.+++.... .....++ +..+.+++... +..+--.|..+|+..-- ..+.... +
T Consensus 164 ~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~ 239 (370)
T COG1520 164 HLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTT 239 (370)
T ss_pred eEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccccc
Confidence 3455777788887764432 2233333 77888888888 56799999988877651 1222211 1
Q ss_pred ceE--EEEeec-eeEEEEecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCC
Q 015220 324 SAF--IFLYEN-QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 324 sAf--ifLy~s-qlFlSfsd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
.++ --++.. .++....++.+---|.+ |+++=+++-...-...-....=++..||...+......
T Consensus 240 ~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~ 307 (370)
T COG1520 240 PAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDND 307 (370)
T ss_pred ccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccc
Confidence 111 114444 44555566755555555 88887777651100011111222225888888766554
No 352
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=39.93 E-value=85 Score=21.26 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=19.0
Q ss_pred ccceEEEcCCCCEEEEEecCCCCCccccCCceEEEe
Q 015220 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVS 402 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~ 402 (411)
..-..++||||+.|+=.+... . .|.-+||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~------~-~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRN------D-RGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT---------SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCC------C-CCCcCEE
Confidence 455789999999988777654 1 4566665
No 353
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=39.49 E-value=5e+02 Score=30.72 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=69.9
Q ss_pred cCCCeEEEEEeeCceEEEEeccC--ceeEEEEe--CC-----------EEEEEEecCCCceeeEEEEecCCcEEeEeeec
Q 015220 212 AQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS--PG-----------IMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkIS--dG-----------~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~L 276 (411)
+.-+.+-|=|-.+|+.|++|+.+ .|-.||-+ +- ..||..+. +. -|.|||..++-..-. +
T Consensus 32 gshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~-~G--rIil~d~~~~s~~~~---l 105 (1062)
T KOG1912|consen 32 GSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI-SG--RIILVDFVLASVINW---L 105 (1062)
T ss_pred ecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc-cC--cEEEEEehhhhhhhh---h
Confidence 45566778899999999999987 77777765 22 22333332 22 256788888887777 6
Q ss_pred cccCCcceeee------eecceeEEeecCceeeEEEcccceEEE
Q 015220 277 LHRNKKVDFIE------QFNEKLLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 277 L~h~K~I~FLE------~~~ekllIKQe~~~LkI~dL~t~e~~~ 314 (411)
-+|++++|=|- .+.+-++...+.+.|.+||--||+.+-
T Consensus 106 ~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 106 SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee
Confidence 78899987543 344567788899999999999998764
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.42 E-value=4.4e+02 Score=27.59 Aligned_cols=25 Identities=8% Similarity=0.064 Sum_probs=20.7
Q ss_pred ecceeEEeecCceeeEEEcccceEE
Q 015220 289 FNEKLLVKQENENLQILDVRNFELT 313 (411)
Q Consensus 289 ~~ekllIKQe~~~LkI~dL~t~e~~ 313 (411)
+--.++|.+.+++.+..|-++|..+
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~ 46 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLI 46 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEE
Confidence 3356789999999999999998765
No 355
>PHA02713 hypothetical protein; Provisional
Probab=38.84 E-value=5.4e+02 Score=27.91 Aligned_cols=152 Identities=7% Similarity=0.031 Sum_probs=87.7
Q ss_pred CCCeEEeeCCCCeEEEeecCC-----CeEEEEEeeCc--eEEEEeccC--ceeEEEEeCCEEEEEEecCCC---------
Q 015220 194 WPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNY--TMLYSISDK--NVQEIKISPGIMLLIFTKASG--------- 255 (411)
Q Consensus 194 ~PgfvEFDd~NGkiLt~~~~d-----s~ykVWdL~~Y--s~iysLs~~--~VqeIkISdG~~Lai~q~t~~--------- 255 (411)
.++-+.. +|++-+.++.+ ++..+||.++- +.+-.+... .. .+..-+|.+.+++-.+..
T Consensus 344 ~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 344 RFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred ceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccc
Confidence 4455544 47888877764 34666776653 333333322 22 223347887777654321
Q ss_pred -----------ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecC-------ceeeEEEccc-ceEEEee
Q 015220 256 -----------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN-------ENLQILDVRN-FELTEVS 316 (411)
Q Consensus 256 -----------~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~-------~~LkI~dL~t-~e~~~v~ 316 (411)
..-+-.+|.++.+=.. .-.++...----+...+++|++--+. ..+..||..+ .+-..++
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~--v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWET--LPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEee--cCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 1225567777765432 22232222223578889999887542 2467899999 6777765
Q ss_pred ccccCCCceEEEEeeceeEEEE-ecC--eEEEEecC-Cc
Q 015220 317 RTEFMTPSAFIFLYENQLFLTF-RNR--TVAVWNFR-GE 351 (411)
Q Consensus 317 ~T~f~hpsAfifLy~sqlFlSf-sd~--tI~iWn~~-Ge 351 (411)
+--..-..+=..+...+||+.+ -++ +++.+|+. .+
T Consensus 498 ~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 498 TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccCcccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 4443333344445566999998 455 78888887 44
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=37.84 E-value=1.2e+02 Score=34.36 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=34.5
Q ss_pred eeccccccC---CCCccc-eEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 355 SFEDHLLWH---PDCNTN-NIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 355 s~e~H~~~~---~~c~~n-~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
.++-|.+|+ |+=++. ++.--|||.+|+-|-+|. ||.|-|.++|..+
T Consensus 48 R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG----------~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 48 RLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG----------TIRLHDVEKGGRL 97 (665)
T ss_pred EeccceeEeccCCCCccceeeeecCCCCEEEEEecCC----------eEEEEEccCCCce
Confidence 555555552 333444 667789999999999996 9999999999754
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=35.71 E-value=20 Score=40.50 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=75.8
Q ss_pred EecCCCceeeEEEEecCC--cE----EeEeeeccccCCcceeeeeecceeEEeecCc-eeeEEEcccceEEEeeccccCC
Q 015220 250 FTKASGHVPLKILSIEDG--TV----LKSFNHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNFELTEVSRTEFMT 322 (411)
Q Consensus 250 ~q~t~~~ipiKIl~I~tG--~~----L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~-~LkI~dL~t~e~~~v~~T~f~h 322 (411)
...-.+..|++||+|+++ -+ +.....+.+.+ -+=-+ -.++++++--.. ++.|.|++-.--.+ ..+ .
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqn-s~cwl--rd~klvlaGm~sr~~~ifdlRqs~~~~---~sv-n 194 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQN-SVCWL--RDTKLVLAGMTSRSVHIFDLRQSLDSV---SSV-N 194 (783)
T ss_pred hhhhcccCCccceecccccCCCccccccccccccCcc-ccccc--cCcchhhcccccchhhhhhhhhhhhhh---hhh-h
Confidence 344458999999999998 11 11111223332 22222 455666665444 78888888322222 111 1
Q ss_pred CceEEEEeec----eeEEEEecCeEEEEe-cC--CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccC
Q 015220 323 PSAFIFLYEN----QLFLTFRNRTVAVWN-FR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (411)
Q Consensus 323 psAfifLy~s----qlFlSfsd~tI~iWn-~~--Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~ 395 (411)
..++--+... ..|.++.++-|++|| .+ -.++.+..... |+ -|||=+-+-||.-+..-.....
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~--------N~---~~~~l~~~aycPtrtglla~l~ 263 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNE--------NK---KPKQLFALAYCPTRTGLLAVLS 263 (783)
T ss_pred hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCC--------CC---cccceeeEEeccCCcchhhhhc
Confidence 1222222222 678999999999999 55 33555433222 11 2467777888877643322222
Q ss_pred --CceEEEeeec
Q 015220 396 --NGKLFVSLLM 405 (411)
Q Consensus 396 --~gtI~i~~i~ 405 (411)
.++|...||-
T Consensus 264 RdS~tIrlydi~ 275 (783)
T KOG1008|consen 264 RDSITIRLYDIC 275 (783)
T ss_pred cCcceEEEeccc
Confidence 2788888774
No 358
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=34.91 E-value=59 Score=37.63 Aligned_cols=105 Identities=16% Similarity=0.244 Sum_probs=65.4
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeC-ceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccc
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~-Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~ 278 (411)
|..-+-.||+-+.-|...--|||+. -.++|+-++- ++|......++.
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w------------------------------~s~asqVkwnyk-- 169 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW------------------------------RSAASQVKWNYK-- 169 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceeeeecc------------------------------cccCceeeeccc--
Confidence 4445666888889999999999986 3355554421 123332222221
Q ss_pred cCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-----eeEEEEecCeEEEEecC
Q 015220 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-----QLFLTFRNRTVAVWNFR 349 (411)
Q Consensus 279 h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-----qlFlSfsd~tI~iWn~~ 349 (411)
+..++.++.++.+.|||++.|..-.. ++.+|-+.+.-++.+ ++.-+-.|+||.+||-.
T Consensus 170 -----------~p~vlasshg~~i~vwd~r~gs~pl~--s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 170 -----------DPNVLASSHGNDIFVWDLRKGSTPLC--SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred -----------CcchhhhccCCceEEEeccCCCcceE--EecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 11235567788888999988654332 666666666655544 44444599999999976
No 359
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=34.26 E-value=1.4e+02 Score=25.15 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=40.3
Q ss_pred eeEEEEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 333 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 333 qlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+.++....+.|-.|+.. -+....+-.. .-|-|.+|||++.|.-.+--. ++|.++...
T Consensus 28 E~~l~~~~~~Vvyyd~~--~~~~va~g~~-----~aNGI~~s~~~k~lyVa~~~~---------~~I~vy~~~ 84 (86)
T PF01731_consen 28 ETYLGLPWGNVVYYDGK--EVKVVASGFS-----FANGIAISPDKKYLYVASSLA---------HSIHVYKRH 84 (86)
T ss_pred HHHhcCCCceEEEEeCC--EeEEeeccCC-----CCceEEEcCCCCEEEEEeccC---------CeEEEEEec
Confidence 45666677888888753 2444444455 789999999999998776553 488887754
No 360
>PHA02790 Kelch-like protein; Provisional
Probab=32.49 E-value=6.2e+02 Score=26.72 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=87.8
Q ss_pred eCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeec----CceeeEEEcccceEEEeec
Q 015220 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNFELTEVSR 317 (411)
Q Consensus 242 SdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe----~~~LkI~dL~t~e~~~v~~ 317 (411)
-+|.+.+++-... ...+..|+..+++-..- -.++....-......++++++--+ ......||..+.+-..+++
T Consensus 317 ~~~~iYviGG~~~-~~sve~ydp~~n~W~~~--~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 317 ANNKLYVVGGLPN-PTSVERWFHGDAAWVNM--PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ECCEEEEECCcCC-CCceEEEECCCCeEEEC--CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 4788777776432 24567788776654332 123332223356677888877643 2457899999988888766
Q ss_pred cccCCCceEEEEeeceeEEEEecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCc
Q 015220 318 TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNG 397 (411)
Q Consensus 318 T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~g 397 (411)
.......+-..+....||+.+ +..++||+.-+-=+.+.. +. +|-..... ..-+|.+-+.|.-+.. ....
T Consensus 394 m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~-m~-~~r~~~~~--~v~~~~IYviGG~~~~-----~~~~ 462 (480)
T PHA02790 394 TYYPHYKSCALVFGRRLFLVG--RNAEFYCESSNTWTLIDD-PI-YPRDNPEL--IIVDNKLLLIGGFYRG-----SYID 462 (480)
T ss_pred CCCccccceEEEECCEEEEEC--CceEEecCCCCcEeEcCC-CC-CCccccEE--EEECCEEEEECCcCCC-----cccc
Confidence 543222333344566899988 458899998442222221 11 12222222 2336677777764420 1124
Q ss_pred eEEEeeeccee
Q 015220 398 KLFVSLLMFVT 408 (411)
Q Consensus 398 tI~i~~i~tGk 408 (411)
++..+|..+++
T Consensus 463 ~ve~Yd~~~~~ 473 (480)
T PHA02790 463 TIEVYNNRTYS 473 (480)
T ss_pred eEEEEECCCCe
Confidence 78888887765
No 361
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=31.51 E-value=5.6e+02 Score=25.88 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=51.6
Q ss_pred ceeeeeecceeEEeecCceeeEEEccc-----ceEEEeeccccCC--------CceEEEEeeceeEEEEec---------
Q 015220 283 VDFIEQFNEKLLVKQENENLQILDVRN-----FELTEVSRTEFMT--------PSAFIFLYENQLFLTFRN--------- 340 (411)
Q Consensus 283 I~FLE~~~ekllIKQe~~~LkI~dL~t-----~e~~~v~~T~f~h--------psAfifLy~sqlFlSfsd--------- 340 (411)
..-|...++++++.+...-+++.|... ++...+ .+.|.. +..+.+---..||++..+
T Consensus 74 p~Gi~~~~~GlyV~~~~~i~~~~d~~gdg~ad~~~~~l-~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 74 VTGLAVAVGGVYVATPPDILFLRDKDGDDKADGEREVL-LSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred ccceeEecCCEEEeCCCeEEEEeCCCCCCCCCCccEEE-EEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 455788888888887665444445421 122222 133322 223333223367776642
Q ss_pred -----------CeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEEEe
Q 015220 341 -----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (411)
Q Consensus 341 -----------~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~ 384 (411)
+.|--++++|..+.-+..- ..|.+-+.++++|++.++-+
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-----~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHG-----FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCccCcccccCceEEEEecCCCeEEEEecC-----cCCCccceECCCCCEEEEcc
Confidence 2344445555444333222 24788899999999988754
No 362
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.45 E-value=1e+02 Score=34.69 Aligned_cols=101 Identities=8% Similarity=0.045 Sum_probs=72.2
Q ss_pred eecceeEEeecCceeeEEEcccceEEE--eeccccCCCceEEEEee------ceeE-EEEecCeEEEEecCCceeeeecc
Q 015220 288 QFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFLYE------NQLF-LTFRNRTVAVWNFRGELVTSFED 358 (411)
Q Consensus 288 ~~~ekllIKQe~~~LkI~dL~t~e~~~--v~~T~f~hpsAfifLy~------sqlF-lSfsd~tI~iWn~~Gel~~s~e~ 358 (411)
..+|-++....+|-+-.|+=.+.+..+ +.+.-|.-|.-+++=-- +..| ++-+||++-+-+-.|..-++.+-
T Consensus 23 ~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~rVE~sv~A 102 (737)
T KOG1524|consen 23 SSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSARVERSISA 102 (737)
T ss_pred cccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccchhhhhhhh
Confidence 466777777877777777666665555 22233445555544221 1334 44499999999999999999999
Q ss_pred ccccCCCCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 359 H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
|-+ .+-.---+|||-=|++...|- -||||.
T Consensus 103 H~~-----A~~~gRW~~dGtgLlt~GEDG----------~iKiWS 132 (737)
T KOG1524|consen 103 HAA-----AISSGRWSPDGAGLLTAGEDG----------VIKIWS 132 (737)
T ss_pred hhh-----hhhhcccCCCCceeeeecCCc----------eEEEEe
Confidence 988 555666789999999988774 999997
No 363
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.20 E-value=34 Score=37.38 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=53.7
Q ss_pred ccCCCceEEEEeec--eeEEEE-ecCeEEEEecCC----ceeeeeccccccCCCCccceEEEcCCCCEEEEEec-CC
Q 015220 319 EFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRG----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK-AD 387 (411)
Q Consensus 319 ~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~G----el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~-d~ 387 (411)
-+||...+.-+.-+ +++++. -|+.+..|...+ |.+.-|--|++ .+-.++.|-||-+..|.|. |+
T Consensus 5 symhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-----~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-----VILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred hhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-----HHHhhhccccceeEeeccCccc
Confidence 46777777665544 888898 899999999987 46668888888 9999999999999999998 77
No 364
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=30.97 E-value=90 Score=26.39 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=26.3
Q ss_pred ecCeEEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 339 RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 339 sd~tI~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.+|-+--||+...-++.+-+-+. .-|-|++|+||+.++-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~-----fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY-----FPNGVALSPDESFVLV 73 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES-----SEEEEEE-TTSSEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCC-----ccCeEEEcCCCCEEEE
Confidence 66778888888555555555454 8899999999995544
No 365
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.15 E-value=2.6e+02 Score=34.09 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=92.0
Q ss_pred CeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEe--CCEEEEEEecCCCceeeEEE-EecCCcEEeE
Q 015220 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKIL-SIEDGTVLKS 272 (411)
Q Consensus 196 gfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkIS--dG~~Lai~q~t~~~ipiKIl-~I~tG~~L~t 272 (411)
.||-|+|.---++.....+..+-+||++..+.-..+++.-+.-=+++ -+.|- +...-++-.|+... +|-++.+..-
T Consensus 105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~-~~~~wnP~vp~n~av~l~dlsl~V~ 183 (1405)
T KOG3630|consen 105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQ-LKNVWNPLVPLNSAVDLSDLSLRVK 183 (1405)
T ss_pred EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhcccccc-ccccccCCccchhhhhccccchhhh
Confidence 48888886666666677788999999999876655443333333344 22221 11122233333322 2223333221
Q ss_pred eeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec----eeEEEEecCeEEEEec
Q 015220 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN----QLFLTFRNRTVAVWNF 348 (411)
Q Consensus 273 ~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s----qlFlSfsd~tI~iWn~ 348 (411)
++-.++ -++ +-|.--.+..++.-+ |+++=+.++|+-=|.+
T Consensus 184 ---~~~~~~-----------------------~~v----------~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 184 ---STKQLA-----------------------QNV----------TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred ---hhhhhh-----------------------hhh----------cccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 111100 011 112233445556555 8888889999999999
Q ss_pred CCceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCC
Q 015220 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (411)
Q Consensus 349 ~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~ 388 (411)
.++.++...+--.+. +--+-.|-+=..++++|+|.+..+
T Consensus 228 ~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts 266 (1405)
T KOG3630|consen 228 SLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTS 266 (1405)
T ss_pred ccceeecccCCCcCC-CcceeEEEEecceeEEEEeccccc
Confidence 999988877655544 445566777789999999999874
No 366
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=30.04 E-value=6.9e+02 Score=26.50 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=82.7
Q ss_pred ceeEEEEe-CCEEEEEEecCCCc-eeeEEEEecCCcEEeEeeeccccCCcceeeeeecc--eeEEee---cCceeeEEEc
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGH-VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQ---ENENLQILDV 307 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~-ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~e--kllIKQ---e~~~LkI~dL 307 (411)
-+..=+.| +|.-++.+.-.... .-+-++++.+|+.-.-..+ -+++--. .-++| ++++.. ++..|=++|+
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P---~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAP---AFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCc---cCCCCCCEEEEEECCCCCccEEEEcC
Confidence 55556677 88877777777766 7788899999988776542 2332222 33553 443332 6677778899
Q ss_pred ccceEEEeeccccCCCceEEEEe--ecee-EEEEecCe--EEEEecCCceeeeeccccccCCCCccceEEEcCCCCEEEE
Q 015220 308 RNFELTEVSRTEFMTPSAFIFLY--ENQL-FLTFRNRT--VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (411)
Q Consensus 308 ~t~e~~~v~~T~f~hpsAfifLy--~sql-FlSfsd~t--I~iWn~~Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS 382 (411)
.++...++ |.......==++. -+.+ |.|=+.+. |-+.|+.|.=++.++-+.. ...+--+||||+.|+.
T Consensus 270 ~~~~~~~L--t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-----~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 270 DGKNLPRL--TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-----GNSNPVWSPDGDKIVF 342 (425)
T ss_pred CCCcceec--ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-----CCcCccCCCCCCEEEE
Confidence 99886663 2221111100111 1133 22224443 4455666776676666666 3337779999999988
Q ss_pred Eec
Q 015220 383 YCK 385 (411)
Q Consensus 383 ~~~ 385 (411)
-+.
T Consensus 343 ~~~ 345 (425)
T COG0823 343 ESS 345 (425)
T ss_pred Eec
Confidence 773
No 367
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=29.82 E-value=7.1e+02 Score=26.52 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=24.8
Q ss_pred ceeEEEEecC-eEEEEecC-CceeeeeccccccCCCC
Q 015220 332 NQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDC 366 (411)
Q Consensus 332 sqlFlSfsd~-tI~iWn~~-Gel~~s~e~H~~~~~~c 366 (411)
..|++|.+.. .|-..|.+ |+++=-+-+|..|.+..
T Consensus 283 d~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~ 319 (477)
T PF05935_consen 283 DSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTY 319 (477)
T ss_dssp TEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTT
T ss_pred CeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCccc
Confidence 3889999776 88888866 99999999999997763
No 368
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=29.27 E-value=2.8e+02 Score=29.16 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=62.5
Q ss_pred cCCcEEeEee--eccccCCcceeeeeec-ceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-
Q 015220 265 EDGTVLKSFN--HLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF- 338 (411)
Q Consensus 265 ~tG~~L~t~~--~LL~h~K~I~FLE~~~-ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf- 338 (411)
+||+.+..|. ..+++-+|=+.++..+ .++++..-+..++..|+.|+|..+++...+.-..-..+.+.- .-|...
T Consensus 230 ~tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~~~~~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~~~~~~~vvs 309 (355)
T COG1499 230 FTGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRSIGKGIVVLDLETGEPVEITWSVYKRNEGKVAVKEPRLKKAVVVS 309 (355)
T ss_pred CCCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEEecCceEEEecccCCccccChhhcccCcceeeeccccceEEEEEe
Confidence 4899888666 6788999999999999 555888899999999999999999777443333322222222 233333
Q ss_pred -ecCeEEEEecCCceeee
Q 015220 339 -RNRTVAVWNFRGELVTS 355 (411)
Q Consensus 339 -sd~tI~iWn~~Gel~~s 355 (411)
.-+++.+-|.+.=...+
T Consensus 310 ~~~~~~~v~d~et~e~~~ 327 (355)
T COG1499 310 RDPSAIQVLDPETYEART 327 (355)
T ss_pred cCCCceEEEecceEEEEe
Confidence 44468888775333333
No 369
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=28.27 E-value=9.7e+02 Score=27.63 Aligned_cols=150 Identities=9% Similarity=0.054 Sum_probs=76.8
Q ss_pred EEeCCEEEEEEecCC------CceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCc---eeeEEEcccc
Q 015220 240 KISPGIMLLIFTKAS------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRNF 310 (411)
Q Consensus 240 kISdG~~Lai~q~t~------~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~---~LkI~dL~t~ 310 (411)
.|.++.+++=..... ..-.|.-+|++||++++.+.. +. |..- +...++...+.++. ..--+|-.++
T Consensus 313 ~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~--g~--p~~~-~~~~~g~~~~~gg~n~W~~~s~D~~~g 387 (764)
T TIGR03074 313 LVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP--GN--PDPT-APPAPGETYTRNTPNSWSVASYDEKLG 387 (764)
T ss_pred EEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec--CC--CCcc-cCCCCCCEeccCCCCccCceEEcCCCC
Confidence 344676555433222 356789999999999998762 11 1110 11112222222222 2445566666
Q ss_pred eEEEeeccccCCCceEEE--EeeceeEEEEecCeEEEEecC-Cceeeee--ccccccCCCCccceEEE--c-CCCC---E
Q 015220 311 ELTEVSRTEFMTPSAFIF--LYENQLFLTFRNRTVAVWNFR-GELVTSF--EDHLLWHPDCNTNNIYI--T-SDQD---L 379 (411)
Q Consensus 311 e~~~v~~T~f~hpsAfif--Ly~sqlFlSfsd~tI~iWn~~-Gel~~s~--e~H~~~~~~c~~n~i~I--s-~Dqd---~ 379 (411)
..+- .|-=..|..+-. -...++| .++|---|.+ |+++=.| .-|-+|.-|..---+.+ + .||+ .
T Consensus 388 lvy~--ptGn~~pd~~g~~r~~~~n~y----~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~ 461 (764)
T TIGR03074 388 LVYL--PMGNQTPDQWGGDRTPADEKY----SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPA 461 (764)
T ss_pred eEEE--eCCCccccccCCccccCcccc----cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeE
Confidence 6554 011001100000 0000111 3445555665 6665543 45777765555444443 2 2663 7
Q ss_pred EEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 380 IISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 380 iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
++.+.|+- -+.+.|-.|||.+
T Consensus 462 v~~~~K~G----------~~~vlDr~tG~~l 482 (764)
T TIGR03074 462 LVAPTKQG----------QIYVLDRRTGEPI 482 (764)
T ss_pred EEEECCCC----------EEEEEECCCCCEE
Confidence 77777774 9999999999976
No 370
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=28.27 E-value=5.2e+02 Score=27.41 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=51.4
Q ss_pred ceeeEEEcccceEEEeeccccCCCceEEE-EeeceeEEEE-ecCeEEEEecC--CceeeeeccccccCCCCccceEEEcC
Q 015220 300 ENLQILDVRNFELTEVSRTEFMTPSAFIF-LYENQLFLTF-RNRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS 375 (411)
Q Consensus 300 ~~LkI~dL~t~e~~~v~~T~f~hpsAfif-Ly~sqlFlSf-sd~tI~iWn~~--Gel~~s~e~H~~~~~~c~~n~i~Is~ 375 (411)
..+-++|+.+++.-.+..... +-.+--| -+.+++.++- +|+...+|-.+ |.-++.|+.-.+ ....=.+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-----i~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG-----INTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-----cccCccCCC
Confidence 569999999998887654222 2233222 2345777777 88887777555 544444544444 444778999
Q ss_pred CCCEEEEEe
Q 015220 376 DQDLIISYC 384 (411)
Q Consensus 376 Dqd~iiS~~ 384 (411)
||+.|+=.|
T Consensus 292 dG~~ivf~S 300 (425)
T COG0823 292 DGSKIVFTS 300 (425)
T ss_pred CCCEEEEEe
Confidence 999998664
No 371
>PF04435 SPK: Domain of unknown function (DUF545) ; InterPro: IPR006570 SPK is a domain of unknown function found in SET and PHD domain containing proteins and protein kinases.
Probab=28.11 E-value=64 Score=26.72 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.0
Q ss_pred cCCCCeEEeeCCCCeEEEeecCCCeEE
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~ds~yk 218 (411)
|+-=|-||.|+ +|+|+.|.+.|+.++
T Consensus 83 L~~~a~v~lD~-~~rI~~Y~s~dg~l~ 108 (109)
T PF04435_consen 83 LRKHADVELDE-KGRIIKYKSKDGSLK 108 (109)
T ss_pred HHhCcEEEEcC-CCCEEEEEeCCCEEe
Confidence 44567899987 799999999999876
No 372
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.65 E-value=1.4e+02 Score=30.01 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=41.1
Q ss_pred ceEEEEeccC---ceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee
Q 015220 225 YTMLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (411)
Q Consensus 225 Ys~iysLs~~---~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl 293 (411)
|+.+.+.+++ --|-...-|| .++.+..--..+-|.+|+|.+|+++.+-++ .-=+.|+|++
T Consensus 34 ~evi~~yphDs~sfTQGL~~~~g-~i~esTG~yg~S~ir~~~L~~gq~~~s~~l--------~~~~~FgEGi 96 (262)
T COG3823 34 YEVIRTYPHDSTSFTQGLEYLDG-HILESTGLYGFSKIRVSDLTTGQEIFSEKL--------APDTVFGEGI 96 (262)
T ss_pred eEEEEeccCchhhhhcceeeeCC-EEEEeccccccceeEEEeccCceEEEEeec--------CCccccccce
Confidence 3445555544 3455556678 567777778889999999999999998543 2124566665
No 373
>PF08470 NTNH_C: Nontoxic nonhaemagglutinin C-terminal; InterPro: IPR013677 Bacteria of the Clostridium genus produce protein neurotoxins, which are complexes consisting of neurotoxin (NT), haemagglutinin (HA), nontoxic nonhaemagglutinin (NTNH), and RNA [, ]. The domain described here is found at the C terminus of the NTNH component. ; PDB: 3V0B_B 3V0A_B.
Probab=27.48 E-value=3.4e+02 Score=25.75 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=28.9
Q ss_pred eeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec-eeEEEEecC
Q 015220 292 KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFRNR 341 (411)
Q Consensus 292 kllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s-qlFlSfsd~ 341 (411)
++-|..|++.||+.|=.+.+..-+-.+-+|.|--..|-|.+ -+.||.+|+
T Consensus 92 Yidis~enNriqlvd~k~~a~k~iinNdiF~sNclt~~~n~ky~~ls~k~~ 142 (165)
T PF08470_consen 92 YIDISSENNRIQLVDNKNNAKKIIINNDIFISNCLTLSYNNKYISLSMKDE 142 (165)
T ss_dssp EEEE--TTSBEEEES-GGG---EEEE--TT-TT-BEEEETTEEEEEEEE-S
T ss_pred EEEeecCCceEEEEecCCCceEEEEEcCeeccceEEEEECCEEEEEEEccC
Confidence 34455599999999999988777455666688888887766 456776654
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=27.43 E-value=1.7e+02 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=27.9
Q ss_pred CccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeecceeee
Q 015220 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLMFVTCK 410 (411)
Q Consensus 366 c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~tGk~~ 410 (411)
..++.+.-+|+.|+|.-+..+. .|-|+-+ +|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g----------~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDG----------EVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCC----------eEEEEEC-CCcCc
Confidence 4577999999999999999885 8888887 66643
No 375
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=27.19 E-value=5.4e+02 Score=27.11 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=42.7
Q ss_pred eeEEEE-ecCeEEEEecC--Cc-eeeeeccccccCCCCccceEEEcC-CCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 333 QLFLTF-RNRTVAVWNFR--GE-LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 333 qlFlSf-sd~tI~iWn~~--Ge-l~~s~e~H~~~~~~c~~n~i~Is~-Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
++..|+ .|+.+..||.| ++ +-++-.-|-. -+-+|+=|| ++-.|+.|+-|+ .|.+||..
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-----GV~SI~ss~~~~~~I~TGsYDe----------~i~~~DtR 241 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-----GVVSIYSSPPKPTYIATGSYDE----------CIRVLDTR 241 (339)
T ss_pred ceEEecCCCceEEEEEecCCcceeeecceeeec-----ceEEEecCCCCCceEEEecccc----------ceeeeehh
Confidence 788999 78899999999 43 2233334444 455566554 567999999999 99999976
No 376
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=26.98 E-value=7.6e+02 Score=25.96 Aligned_cols=171 Identities=14% Similarity=0.186 Sum_probs=86.5
Q ss_pred cCCCeEEEEEeeCceEEEEec--c-----C---c--eeEEEEe----CC---EEEEEEecCCCceeeEEEEecCCcEEeE
Q 015220 212 AQDSIYKVFDLKNYTMLYSIS--D-----K---N--VQEIKIS----PG---IMLLIFTKASGHVPLKILSIEDGTVLKS 272 (411)
Q Consensus 212 ~~ds~ykVWdL~~Ys~iysLs--~-----~---~--VqeIkIS----dG---~~Lai~q~t~~~ipiKIl~I~tG~~L~t 272 (411)
-+++++-|-||+.=.-||.-. + . . ..|+.+. |+ ..|+++......+-+||+==..|.-...
T Consensus 104 y~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~ 183 (395)
T PF08596_consen 104 YESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQ 183 (395)
T ss_dssp ETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEE
T ss_pred ecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEE
Confidence 468899999999988887732 2 1 1 2333333 55 6666666666666666632233444444
Q ss_pred eeecc-ccCCcceeeeeec-----------------------ceeEEeecCceeeEEEcccceEEEeeccccCCCceEE-
Q 015220 273 FNHLL-HRNKKVDFIEQFN-----------------------EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFI- 327 (411)
Q Consensus 273 ~~~LL-~h~K~I~FLE~~~-----------------------ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfi- 327 (411)
+.... .+..+|-.|..++ ...+|.-..+-++|+.+-+++... ..|..|.+--
T Consensus 184 ~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~---K~~~~~~~~~~ 260 (395)
T PF08596_consen 184 FAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH---KSFDDPFLCSS 260 (395)
T ss_dssp EEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---EE-SS-EEEEE
T ss_pred EeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---eeeccccccce
Confidence 44332 4445555555442 236777788899999999988765 4444443322
Q ss_pred --EE-----eeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 328 --FL-----YENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 328 --fL-----y~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
++ .....++.+ .|++|+++.+- -+.+.++.=+... .--...+..||++||++.=-+..
T Consensus 261 ~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~-d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 261 ASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPL-DSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp EEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHTT-EE-TTS-EEEE-SSS
T ss_pred EEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcc-ccccccccEECCCCCEEEEeCcc
Confidence 22 112345555 99999999998 4444443332110 01134566779999977544443
No 377
>PRK05560 DNA gyrase subunit A; Validated
Probab=26.91 E-value=1e+03 Score=27.47 Aligned_cols=118 Identities=14% Similarity=0.278 Sum_probs=70.5
Q ss_pred EEeeccceehhhhccccceeeecc-------cccEEEEEeCCCCceEEEEEeecCCCeEEEEEeEecCCCceeeeEeeeh
Q 015220 100 EIVAARDIVFALAQSGVCAAFCRE-------TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (411)
Q Consensus 100 EIv~a~dii~~L~~sG~c~af~~~-------t~~~ic~lN~s~~evIrsifyN~~n~slI~vSv~~sd~~s~L~cr~~~~ 172 (411)
|.++.+++++.|++.|....-+.. +++-+-.+.-..+..+..++-=..++.|+++| +.=++..++.
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfT-------s~Grv~~l~v 565 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFT-------NRGRVYRLKV 565 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEe-------cCCeEEEEEh
Confidence 456778999999999987766432 22222333333455666777777788888866 3446777777
Q ss_pred hhhhhCC-CCCCCcc------eeecccCCCCeEEeeC-CCCeEEEeecCCCeEEEEEeeCce
Q 015220 173 EYIRRGK-PDAGFAL------FESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYT 226 (411)
Q Consensus 173 ~~i~~gk-~~~~~~L------F~~~~l~~PgfvEFDd-~NGkiLt~~~~ds~ykVWdL~~Ys 226 (411)
..|..++ ...|.++ -..+.+. +-+.+++ .++..++....++-+|--++..|.
T Consensus 566 ~~iP~~~~~~~G~~i~~ll~L~~~E~Iv--~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~ 625 (805)
T PRK05560 566 YEIPEASRTARGRPIVNLLPLEPGEKIT--AILPVREFDDDKYLFFATKNGTVKKTSLSEFS 625 (805)
T ss_pred hhCcCCCcCCCCeEHHHhcCCCCCceEE--EEEeccCCCCCCEEEEEeCCCEEEEEEhHHhh
Confidence 7775544 3456554 2223332 3333443 244555656677777777766664
No 378
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=26.85 E-value=4.9e+02 Score=33.63 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=22.2
Q ss_pred cceEEEcCCCCEEEEEecCCCCCccccCCceEEEee
Q 015220 368 TNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSL 403 (411)
Q Consensus 368 ~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~ 403 (411)
+.++.|||||.++.+..+++ +-+|+|+
T Consensus 172 v~~~~~SpDG~f~at~g~~d---------claKvwy 198 (2439)
T KOG1064|consen 172 VYSSTISPDGEFFATIGKRD---------CLAKVWY 198 (2439)
T ss_pred eeEEEEcCCcceEEeccccC---------cchhhhc
Confidence 56788999999999999887 4566666
No 379
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.72 E-value=1.1e+03 Score=27.75 Aligned_cols=187 Identities=12% Similarity=0.151 Sum_probs=92.7
Q ss_pred cccceEEEeeccce--ehhhhccccceeeeccccc--------EEEEEeC---------CCCceEEEEEeecCCCeEEEE
Q 015220 94 KRSKIIEIVAARDI--VFALAQSGVCAAFCRETNQ--------RICFLNV---------TADEVIRSLFYNKNNDSLITV 154 (411)
Q Consensus 94 ~RS~V~EIv~a~di--i~~L~~sG~c~af~~~t~~--------~ic~lN~---------s~~evIrsifyN~~n~slI~v 154 (411)
-.+.|.++-++.+- +++|+..|.-..|....+. ....++. .....+|.+.+-..+ .++++
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 503 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD-TLLVL 503 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC-EEEEE
Confidence 35789999998766 9999999988888743322 1122221 123345665555544 44443
Q ss_pred EeEecCCCceeeeEeeehhhhhh----CCCC-CCCcceeecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEE
Q 015220 155 SVYASDNFSSLRCRSTRIEYIRR----GKPD-AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY 229 (411)
Q Consensus 155 Sv~~sd~~s~L~cr~~~~~~i~~----gk~~-~~~~LF~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iy 229 (411)
+... ...+.+.. +.+.+... .+.. ...+..-.......+.+.+=..+|+++.+......-.+ .
T Consensus 504 ~~~~-~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~---------~ 571 (928)
T PF04762_consen 504 SDSD-SNQSKIVL--VDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQI---------V 571 (928)
T ss_pred EecC-cccceEEE--EEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcccc---------c
Confidence 3222 11111111 11111111 0000 01111111122222213333345665544443332222 1
Q ss_pred Eecc--CceeEEEEeCCE--EEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEE
Q 015220 230 SISD--KNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305 (411)
Q Consensus 230 sLs~--~~VqeIkISdG~--~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~ 305 (411)
+++. ..++-+.+.+.. .++++.-.+++.|+ +++++. +.+-...++++.|++-.-.|.|+.+
T Consensus 572 ~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~------n~~~la---------~~~tSF~v~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 572 KFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA------NSRLLA---------SNCTSFAVTDSFLLFTTTQHTLKFV 636 (928)
T ss_pred cCCCCCcEEEEEEECCccceeEEEEECCCCEEEE------CCEEEe---------cCCceEEEEcCEEEEEecCceEEEE
Confidence 1111 133444444332 45555555565554 555555 3556678899999999999999999
Q ss_pred Ecc
Q 015220 306 DVR 308 (411)
Q Consensus 306 dL~ 308 (411)
+|.
T Consensus 637 ~L~ 639 (928)
T PF04762_consen 637 HLN 639 (928)
T ss_pred ECc
Confidence 999
No 380
>PF04441 Pox_VERT_large: Poxvirus early transcription factor (VETF), large subunit ; InterPro: IPR007532 The poxvirus early transcription factor (VETF), in addition to the viral RNA polymerase, is required for efficient transcription of early genes in vitro. VETF is a heterodimeric protein that binds specifically to early gene promoters. The heterodimer is comprised of an 82 kDa (this family) subunit and a 70 kDa subunit.; GO: 0045893 positive regulation of transcription, DNA-dependent
Probab=25.69 E-value=97 Score=34.89 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=8.1
Q ss_pred eEEEcCCCCEEEE
Q 015220 370 NIYITSDQDLIIS 382 (411)
Q Consensus 370 ~i~Is~Dqd~iiS 382 (411)
+++||+|||+|+-
T Consensus 235 ~laissDg~ti~i 247 (700)
T PF04441_consen 235 SLAISSDGDTITI 247 (700)
T ss_pred cEEEecCCCEEEE
Confidence 4566777776653
No 381
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.68 E-value=82 Score=37.38 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=92.9
Q ss_pred ceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEeEeeeccccCCcceeeeeeccee--E-EeecCce-eeEEEccc
Q 015220 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL--L-VKQENEN-LQILDVRN 309 (411)
Q Consensus 235 ~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekl--l-IKQe~~~-LkI~dL~t 309 (411)
-+.-+++| +.-+||++.++. -||+++..+|..+.+.+ .|+.+|--+|.+.++= | ...-+.+ -.+|++.+
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~G---eik~~nv~sG~~e~s~n---cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAG---EIKIFNVSSGSMEESVN---CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred ceeeEEeecCCceEEeeeccc---eEEEEEccCcccccccc---ccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 45567778 666788888875 58999999999999844 8999999999998874 2 2334443 46899887
Q ss_pred -ceEEEeeccccCCCceEEEEeeceeEEEE-ecCeEEEEecC-Cceeee-eccccccCCCCccceEEEcCCCCEEE
Q 015220 310 -FELTEVSRTEFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 310 -~e~~~v~~T~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s-~e~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
+.+. --|.--+++-|-...|-=+.+ .-....+||.+ |.++-+ |++-... +-.-|-+-.||+-++|+
T Consensus 1177 ~~~~~----Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~--~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1177 TGGPR----HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS--SYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccCcc----ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh--hhhccccccCCCcceEe
Confidence 2222 334444667776665544444 55688899999 886665 7765542 11224456789888887
No 382
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=25.67 E-value=1.1e+02 Score=26.80 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=28.1
Q ss_pred CCEEEEEEecCCCceeeEEEEecCCcEEeEe
Q 015220 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (411)
Q Consensus 243 dG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~ 273 (411)
-|.+.++.+......+|+|.||.+++++++.
T Consensus 29 ~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weq 59 (105)
T cd01205 29 TGAVCLVKDNVQKSYFIRLFDIKANRIIWEQ 59 (105)
T ss_pred EEEEEEEEECCCCEEEEEEEEccCCcEEEEE
Confidence 3888899999999999999999999999983
No 383
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=25.48 E-value=57 Score=28.39 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=17.7
Q ss_pred CCccceEEEcCCCCEEEEEecCC
Q 015220 365 DCNTNNIYITSDQDLIISYCKAD 387 (411)
Q Consensus 365 ~c~~n~i~Is~Dqd~iiS~~~d~ 387 (411)
||. ..|++|+||.+||||=.+.
T Consensus 1 ~c~-~~iavT~dG~tIVcwHP~~ 22 (96)
T PF10210_consen 1 NCK-VEIAVTSDGRTIVCWHPEK 22 (96)
T ss_pred Cce-eeEEEecCCCEEEEeCCCC
Confidence 344 3689999999999997765
No 384
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=24.90 E-value=57 Score=29.19 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=16.2
Q ss_pred cCceeeEEEcccceEEE
Q 015220 298 ENENLQILDVRNFELTE 314 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~ 314 (411)
+.++++|||+.+|++++
T Consensus 39 ~~E~V~I~Nv~NG~Rf~ 55 (111)
T cd06919 39 PYEKVLVVNVNNGARFE 55 (111)
T ss_pred CCCEEEEEECCCCcEEE
Confidence 78999999999999998
No 385
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=24.41 E-value=57 Score=29.79 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=16.4
Q ss_pred cCceeeEEEcccceEEE
Q 015220 298 ENENLQILDVRNFELTE 314 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~ 314 (411)
++++++|||+.+|+++.
T Consensus 39 e~EkV~I~N~nNGaRf~ 55 (126)
T COG0853 39 ENEKVDIVNVNNGARFS 55 (126)
T ss_pred CCceEEEEECCCCcEEE
Confidence 89999999999999998
No 386
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=24.39 E-value=9.4e+02 Score=26.15 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=87.4
Q ss_pred CCCeEEEeecCCCeEEEEEeeC-ceEEE-EeccCceeEEEEe-CCEEEEEEecCCCceeeEEEEecCCcEEe--------
Q 015220 203 VNGKVLTYSAQDSIYKVFDLKN-YTMLY-SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK-------- 271 (411)
Q Consensus 203 ~NGkiLt~~~~ds~ykVWdL~~-Ys~iy-sLs~~~VqeIkIS-dG~~Lai~q~t~~~ipiKIl~I~tG~~L~-------- 271 (411)
|+|-.|-+-.-|.+++||.... .+... .+..-.||.---| +|-+|++.--..+++|=-=++=+++..+.
T Consensus 248 Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeee
Confidence 4455555556689999995544 44443 3333488888888 89999988877777765444444443331
Q ss_pred ---Eee---ecccc---CCcceeeee--ecceeEEeecCce--------eeEEEcccceEEEee---ccccCCCceEEE-
Q 015220 272 ---SFN---HLLHR---NKKVDFIEQ--FNEKLLVKQENEN--------LQILDVRNFELTEVS---RTEFMTPSAFIF- 328 (411)
Q Consensus 272 ---t~~---~LL~h---~K~I~FLE~--~~ekllIKQe~~~--------LkI~dL~t~e~~~v~---~T~f~hpsAfif- 328 (411)
++. ..-++ --|+|-|+- ++|++-+-=++.+ |.+||.++.-.++.+ -+...+|++..|
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~ 407 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG 407 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence 000 00010 135555554 5566633334444 889999998887744 455567887655
Q ss_pred -EeeceeEEEE--ecCeEEEEec
Q 015220 329 -LYENQLFLTF--RNRTVAVWNF 348 (411)
Q Consensus 329 -Ly~sqlFlSf--sd~tI~iWn~ 348 (411)
++...-||+. +.|-|.=|.+
T Consensus 408 pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 408 PLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ecccCCcEEEEEeccCceEeeee
Confidence 6655668888 5555555544
No 387
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=24.05 E-value=39 Score=34.81 Aligned_cols=12 Identities=67% Similarity=1.132 Sum_probs=9.9
Q ss_pred CCCCCCCccccc
Q 015220 1 MEGGGGGGRRIS 12 (411)
Q Consensus 1 ~~~~~~~~~~~~ 12 (411)
||||||+|+++.
T Consensus 1 ~~~~~~~~~~~~ 12 (430)
T PLN00145 1 MEGGGGGGGGGH 12 (430)
T ss_pred CCCCCCCCCCCC
Confidence 899999987654
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=23.53 E-value=6.3e+02 Score=27.75 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=43.1
Q ss_pred cCceeeEEEcccceEEEeeccccC-----CCceEEEEeec---eeEEEE--ecCeEEEEecC-Cc----eeeee--cccc
Q 015220 298 ENENLQILDVRNFELTEVSRTEFM-----TPSAFIFLYEN---QLFLTF--RNRTVAVWNFR-GE----LVTSF--EDHL 360 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~v~~T~f~-----hpsAfifLy~s---qlFlSf--sd~tI~iWn~~-Ge----l~~s~--e~H~ 360 (411)
=|+.|.+||+.++++++ |+.- -|-++=||..- .=|+.- +++-.++|... |+ -|-+. +...
T Consensus 220 yG~~l~vWD~~~r~~~Q---~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQ---TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp S--EEEEEETTTTEEEE---EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccCeEEEEECCCCcEee---EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 38999999999999997 3221 12233333321 112222 23333333322 22 23333 2233
Q ss_pred ccCC----------CCccceEEEcCCCCEEEEEecCCCCCccccCCceEEEeeec
Q 015220 361 LWHP----------DCNTNNIYITSDQDLIISYCKADSDDPLAEGNGKLFVSLLM 405 (411)
Q Consensus 361 ~~~~----------~c~~n~i~Is~Dqd~iiS~~~d~~~~~~~~~~gtI~i~~i~ 405 (411)
+|.. -.-+.-|.||-|..+|--.|=-. |.|..+||.
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~---------GdvrqYDIS 342 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH---------GDVRQYDIS 342 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTT---------TEEEEEE-S
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccC---------CcEEEEecC
Confidence 4421 13578899999999998777543 778777774
No 389
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=23.20 E-value=59 Score=24.95 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.6
Q ss_pred ceEEEcCCCCEEEEEe
Q 015220 369 NNIYITSDQDLIISYC 384 (411)
Q Consensus 369 n~i~Is~Dqd~iiS~~ 384 (411)
+.+|+|+||+.+|.|.
T Consensus 34 ~i~Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQ 49 (57)
T ss_dssp EEEEEETTSSEEEES-
T ss_pred eEEEEcCCCCEEEEeE
Confidence 5799999999999874
No 390
>PF03262 Corona_6B_7B: Coronavirus 6B/7B protein; InterPro: IPR004945 The function of the Coronavirus 6B and 7B proteins is not known.
Probab=22.56 E-value=4.3e+02 Score=25.95 Aligned_cols=115 Identities=26% Similarity=0.321 Sum_probs=60.1
Q ss_pred eecccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeC--ceEE--EEec-cCceeEE--EE----eCCEEEEEEecCCC-
Q 015220 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTML--YSIS-DKNVQEI--KI----SPGIMLLIFTKASG- 255 (411)
Q Consensus 188 ~~~~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~--Ys~i--ysLs-~~~VqeI--kI----SdG~~Lai~q~t~~- 255 (411)
+...-+||||.. .+.|.+==-||+.+ |+++ +-|+ ++.-+.| |+ +..-||-++=.+.-
T Consensus 67 eGf~CtwPGf~~-----------~a~DHiDf~fDlsnPFYsFVd~FyIs~g~~~~ri~LrlvgavpK~KrLnvGC~~sf~ 135 (209)
T PF03262_consen 67 EGFNCTWPGFQN-----------PAHDHIDFYFDLSNPFYSFVDNFYISVGEGNQRINLRLVGAVPKQKRLNVGCHTSFS 135 (209)
T ss_pred cceeccCCCccc-----------ccccceeEEEecCCchheeeeeEEEEecCCCcEEEEEEeccCChhheEeecccccee
Confidence 456678999964 36777777788888 7776 4442 3433333 22 24455555444332
Q ss_pred ---ceeeEEEEecCCcEEeEeeeccccCCcceeeeeecceeEEeecCceeeEEEcccceEEE
Q 015220 256 ---HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (411)
Q Consensus 256 ---~ipiKIl~I~tG~~L~t~~~LL~h~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~ 314 (411)
-..-+||+=.|-+.+.+=.| |.=...++|++-=|.+.==-==+.+||||||+.-+.++
T Consensus 136 v~LPfGtqiYhD~D~q~~V~Grh-l~CthR~YFVkyCP~~~hgyCF~dkLkvy~L~~~rsrk 196 (209)
T PF03262_consen 136 VDLPFGTQIYHDRDMQHPVEGRH-LECTHRVYFVKYCPYNPHGYCFNDKLKVYDLRQFRSRK 196 (209)
T ss_pred ecccccceeeecccccccccccc-ccceeEEEEEEeCCCCCCCeeecceeEEeehhhhhhch
Confidence 12223444333333333221 12233455555444333111135789999998755554
No 391
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=21.61 E-value=1.1e+02 Score=31.50 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=45.0
Q ss_pred eeeEEEcccceEEEeec-cccCCCceEEEEe----eceeEEEE-ecCeEEEEecC-Cc-eeeeeccccc------cCCCC
Q 015220 301 NLQILDVRNFELTEVSR-TEFMTPSAFIFLY----ENQLFLTF-RNRTVAVWNFR-GE-LVTSFEDHLL------WHPDC 366 (411)
Q Consensus 301 ~LkI~dL~t~e~~~v~~-T~f~hpsAfifLy----~sqlFlSf-sd~tI~iWn~~-Ge-l~~s~e~H~~------~~~~c 366 (411)
++++|+++--+...++. ++ .++.+|. -+++.+.+ .++.+-+||-| +. ++-.|.-|.. .||-|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~----~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKAL----DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred ceeeeccccccccccccccc----ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC
Confidence 46677776544333211 22 2355554 34888899 88999999999 54 5557777765 35555
Q ss_pred ccceEEEcCCCCE
Q 015220 367 NTNNIYITSDQDL 379 (411)
Q Consensus 367 ~~n~i~Is~Dqd~ 379 (411)
-.+=.--|+||.+
T Consensus 236 p~~Lft~sedGsl 248 (319)
T KOG4714|consen 236 PEHLFTCSEDGSL 248 (319)
T ss_pred chheeEecCCCcE
Confidence 5444444444443
No 392
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain. aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=21.47 E-value=1.5e+02 Score=23.49 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=25.0
Q ss_pred eeEEeecCceeeEEEcccceEEEeecccc
Q 015220 292 KLLVKQENENLQILDVRNFELTEVSRTEF 320 (411)
Q Consensus 292 kllIKQe~~~LkI~dL~t~e~~~v~~T~f 320 (411)
.++|...++.+|+.|+.|-|.++++...+
T Consensus 6 aqVisi~g~~vQlMD~eTYeT~ev~~p~~ 34 (57)
T cd04467 6 GQVLSIMGDVVQLMDLETYETFEVPIPEE 34 (57)
T ss_pred EEEEEEcCCEEEEeccccceeEEEecchh
Confidence 46788888899999999999999888754
No 393
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=21.45 E-value=6.5e+02 Score=30.25 Aligned_cols=154 Identities=12% Similarity=0.162 Sum_probs=101.7
Q ss_pred ccCCCCeEEeeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccC--ceeEEEEeCCEEEEEEecCCC-ce----eeEEEE
Q 015220 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASG-HV----PLKILS 263 (411)
Q Consensus 191 ~l~~PgfvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~--~VqeIkISdG~~Lai~q~t~~-~i----piKIl~ 263 (411)
-+.-|| |--=-.|+|.|-.+.+.+++-+=|+++.+.+-++..+ .|+++-+++..++..+---.- -. -+||||
T Consensus 174 ~v~a~~-v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 174 NVSASG-VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred eccCCc-eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhh
Confidence 344455 5555578899999999999999999999999999977 899999998886655432211 11 379999
Q ss_pred ecCCcEEeEeeeccccCCcceeeeeec---ceeEEeecCceeeEEE---cccc-eEEEeeccccCCCceEEEEeec--ee
Q 015220 264 IEDGTVLKSFNHLLHRNKKVDFIEQFN---EKLLVKQENENLQILD---VRNF-ELTEVSRTEFMTPSAFIFLYEN--QL 334 (411)
Q Consensus 264 I~tG~~L~t~~~LL~h~K~I~FLE~~~---ekllIKQe~~~LkI~d---L~t~-e~~~v~~T~f~hpsAfifLy~s--ql 334 (411)
|-+=+-|..+-.. +..||+..+| +.+.|.+-+...++.| +.+- -.+.+-++.- +....+.++ .-
T Consensus 253 LRmmral~PI~~~----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~---s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 253 LRMMRALSPIQFP----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNG---SGISAFDISSNGD 325 (1118)
T ss_pred hhhhhccCCcccc----cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCC---CcceeEEecCCCc
Confidence 9887777763332 3336666655 4568888888888888 4442 1111111221 112233333 55
Q ss_pred EEEE--ecCeEEEEecCCce
Q 015220 335 FLTF--RNRTVAVWNFRGEL 352 (411)
Q Consensus 335 FlSf--sd~tI~iWn~~Gel 352 (411)
++.| .+|-|.+|--+-.+
T Consensus 326 alafgd~~g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWADRPQP 345 (1118)
T ss_pred eEEEecccCcEeeecCCCCC
Confidence 6666 88999999855444
No 394
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=21.23 E-value=1e+03 Score=25.46 Aligned_cols=265 Identities=15% Similarity=0.174 Sum_probs=112.4
Q ss_pred ecccccEEEEEeCCCCceEEEEEeec----CCCeEEEEEeEecCCCceeeeEeeehhhhhhCCCCCCCcceeecccCCCC
Q 015220 121 CRETNQRICFLNVTADEVIRSLFYNK----NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG 196 (411)
Q Consensus 121 ~~~t~~~ic~lN~s~~evIrsifyN~----~n~slI~vSv~~sd~~s~L~cr~~~~~~i~~gk~~~~~~LF~~~~l~~Pg 196 (411)
|+.||-++--|=+.+.-.=|--|||+ .-+.|+++|.+ |+ +=+-..+.++.-..-+|-.+-. -+.
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~--dg--~~nly~lDL~t~~i~QLTdg~g--------~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF--DG--NRNLYLLDLATGEITQLTDGPG--------DNT 83 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T--TS--S-EEEEEETTT-EEEE---SS---------B-T
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc--CC--CcceEEEEcccCEEEECccCCC--------CCc
Confidence 45555555555444444444445543 24567776542 32 2233555443332222211100 012
Q ss_pred eEEeeCCCCeEEEeecCCCeEEEEEeeCce--EEEEeccCceeEEEEe---CCEEEEEEecC------------------
Q 015220 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS---PGIMLLIFTKA------------------ 253 (411)
Q Consensus 197 fvEFDd~NGkiLt~~~~ds~ykVWdL~~Ys--~iysLs~~~VqeIkIS---dG~~Lai~q~t------------------ 253 (411)
|-+|=-+.++.+.|-.+...++--||.|-+ .||.++++=+.-...+ |+..++-....
T Consensus 84 ~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 84 FGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp TT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred cceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 224444667899998888888999999977 7899998866544443 66665443322
Q ss_pred -CCceeeEEEEecCCcEEeEe--eeccccCCcceeeeeecceeEEeecC--cee--eEEEccc--ceEEEeecc------
Q 015220 254 -SGHVPLKILSIEDGTVLKSF--NHLLHRNKKVDFIEQFNEKLLVKQEN--ENL--QILDVRN--FELTEVSRT------ 318 (411)
Q Consensus 254 -~~~ipiKIl~I~tG~~L~t~--~~LL~h~K~I~FLE~~~ekllIKQe~--~~L--kI~dL~t--~e~~~v~~T------ 318 (411)
++..=|--.+|.||+.-.=+ ...|+| +||==--+..+..-.|| +.+ +||=+.+ +...+|-+.
T Consensus 164 a~p~~~i~~idl~tG~~~~v~~~~~wlgH---~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTGERKVVFEDTDWLGH---VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp C---EEEEEEETTT--EEEEEEESS-EEE---EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred hCCCceEEEEECCCCceeEEEecCccccC---cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 24455666788899875532 244555 44444445555554543 222 4555544 444433211
Q ss_pred --ccCCCceEEEEeeceeEEEE-ecCeEEEEecC-CceeeeeccccccCCCCccceEEEcCCCCEEEEEecCCCCC----
Q 015220 319 --EFMTPSAFIFLYENQLFLTF-RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD---- 390 (411)
Q Consensus 319 --~f~hpsAfifLy~sqlFlSf-sd~tI~iWn~~-Gel~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d~~~~---- 390 (411)
+|..|..-...|. .+..+ ++..|.-.|+. |+.-. + .+.. -| .....|+||+|++-=..|.+-+
T Consensus 241 gHEfw~~DG~~i~y~--~~~~~~~~~~i~~~d~~t~~~~~-~-~~~p---~~--~H~~ss~Dg~L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYD--SYTPGGQDFWIAGYDPDTGERRR-L-MEMP---WC--SHFMSSPDGKLFVGDGGDAPVDVADA 311 (386)
T ss_dssp EEEEE-TTSS-EEEE--EEETTT--EEEEEE-TTT--EEE-E-EEE----SE--EEEEE-TTSSEEEEEE----------
T ss_pred ccccccCCCCEEEEE--eecCCCCceEEEeeCCCCCCceE-E-EeCC---ce--eeeEEcCCCCEEEecCCCCCcccccc
Confidence 1222222111221 11222 35567777777 54321 1 2222 23 3788999999997655554322
Q ss_pred --ccccCCceEEEeeecceee
Q 015220 391 --PLAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 391 --~~~~~~gtI~i~~i~tGk~ 409 (411)
.+.+..--|-++|+++|+.
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp ---------EEEEEETTTTEE
T ss_pred ccceecCCcEEEEeccccCce
Confidence 2333334677888888763
No 395
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=20.99 E-value=75 Score=29.02 Aligned_cols=17 Identities=47% Similarity=0.507 Sum_probs=16.1
Q ss_pred cCceeeEEEcccceEEE
Q 015220 298 ENENLQILDVRNFELTE 314 (411)
Q Consensus 298 e~~~LkI~dL~t~e~~~ 314 (411)
+.++++|||+.+|++++
T Consensus 40 p~E~V~V~Nv~NG~Rf~ 56 (126)
T PRK05449 40 ENEKVQIVNVNNGARFE 56 (126)
T ss_pred CCCEEEEEECCCCcEEE
Confidence 68999999999999998
No 396
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.78 E-value=8.9e+02 Score=24.57 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred eeCCCCeEEEeecCCCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 200 FDd~NGkiLt~~~~ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
.|=.++++.-+.+..+..++|.+-..-..--+-+..=.=+....|..++-.+....+ -.+..+++|..+..+|
T Consensus 42 ~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~--t~~~~~~~~~~~~r~N----- 114 (307)
T COG3386 42 VDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKI--TLLAEPEDGLPLNRPN----- 114 (307)
T ss_pred EeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCcee--EEeccccCCCCcCCCC-----
Q ss_pred CCcceeeeeecceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeece-----eEEEEecCeEEEEecCCceee
Q 015220 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-----LFLTFRNRTVAVWNFRGELVT 354 (411)
Q Consensus 280 ~K~I~FLE~~~ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~sq-----lFlSfsd~tI~iWn~~Gel~~ 354 (411)
+... +|.--+.+.... .-..=--+++--.++.|..++
T Consensus 115 -------------------------------D~~v-------~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 115 -------------------------------DGVV-------DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR 156 (307)
T ss_pred -------------------------------ceeE-------cCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Q ss_pred eeccccccCCCCccceEEEcCCCCEEE
Q 015220 355 SFEDHLLWHPDCNTNNIYITSDQDLII 381 (411)
Q Consensus 355 s~e~H~~~~~~c~~n~i~Is~Dqd~ii 381 (411)
-+.+|+. ..|.|+.|||++++.
T Consensus 157 l~~~~~~-----~~NGla~SpDg~tly 178 (307)
T COG3386 157 LLDDDLT-----IPNGLAFSPDGKTLY 178 (307)
T ss_pred eecCcEE-----ecCceEECCCCCEEE
No 397
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=80 Score=30.13 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=49.6
Q ss_pred EEeeCceEEEEeccCceeEE-EEeCCEEEEEEecCCCceeeEEEEecCCcEEeEeeecccc
Q 015220 220 FDLKNYTMLYSISDKNVQEI-KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (411)
Q Consensus 220 WdL~~Ys~iysLs~~~VqeI-kISdG~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~~LL~h 279 (411)
|=.++=++++.++-.+++.. .+-.|+.+.+..+. ..+|.+|-++.-++.+..|||.|.=
T Consensus 69 fGe~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~-~~~~~~V~~V~~~~V~VDfNHpLAG 128 (174)
T COG1047 69 FGEYDPDLVQRVPRDEFQGVGELEVGMEVEAEGGD-GEIPGVVTEVSGDRVTVDFNHPLAG 128 (174)
T ss_pred cCCCChHHeEEecHHHhCcCCCCCCCcEEEEcCCC-ceeeEEEEEEcCCEEEEeCCCcCCC
Confidence 34445568888888888888 67799988887777 9999999999999999999998876
No 398
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=20.43 E-value=8.6e+02 Score=24.24 Aligned_cols=165 Identities=12% Similarity=0.146 Sum_probs=96.0
Q ss_pred eEEEEEeeCceEE-EEec------cCceeEEEEe-CC--EEEEEEecCCCceeeEEEEecCCcEEeEee----eccccCC
Q 015220 216 IYKVFDLKNYTML-YSIS------DKNVQEIKIS-PG--IMLLIFTKASGHVPLKILSIEDGTVLKSFN----HLLHRNK 281 (411)
Q Consensus 216 ~ykVWdL~~Ys~i-ysLs------~~~VqeIkIS-dG--~~Lai~q~t~~~ipiKIl~I~tG~~L~t~~----~LL~h~K 281 (411)
.+.|+|+.+.+.. ..+. +.-+..+.-+ |+ .++...++..+++-+.+++..||+.-.... .-+....
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3556777776632 1222 3366677766 54 478889999999999999999987644322 1122223
Q ss_pred cceee-eeecceeEEee--cCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ec--CeEEEE--ecC-C
Q 015220 282 KVDFI-EQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RN--RTVAVW--NFR-G 350 (411)
Q Consensus 282 ~I~FL-E~~~ekllIKQ--e~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd--~tI~iW--n~~-G 350 (411)
++.|+ .-.++.+.+-. +-..|-.+|+..+....+....|.- ...+.+... .+|++. .+ ..-.+| +++ |
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V-~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEV-TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-E-EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceee-cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 33333 22222222222 3456777888888877764444422 124455544 667777 32 234444 444 4
Q ss_pred ceeeeeccccccCCCCccceEEEcCCCCEEEEEecC
Q 015220 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (411)
Q Consensus 351 el~~s~e~H~~~~~~c~~n~i~Is~Dqd~iiS~~~d 386 (411)
.-++.|+.....| .++.+||||+.++--|..
T Consensus 318 ~~~~~LT~~~~~~-----~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 318 GEPKCLTCEDGDH-----YSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TEEEESSTTSSTT-----EEEEE-TTSSEEEEEEES
T ss_pred CCeEeccCCCCCc-----eEEEECCCCCEEEEEEcC
Confidence 4666677666643 699999999999877765
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=20.23 E-value=9e+02 Score=24.40 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=58.7
Q ss_pred ceeeEEEcccc--e--EEEeeccccCCCceEEEEeeceeEEEEecCeEEEEecCCce---------eeeeccccccCCCC
Q 015220 300 ENLQILDVRNF--E--LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---------VTSFEDHLLWHPDC 366 (411)
Q Consensus 300 ~~LkI~dL~t~--e--~~~v~~T~f~hpsAfifLy~sqlFlSfsd~tI~iWn~~Gel---------~~s~e~H~~~~~~c 366 (411)
..|.+++-.++ . ...+=......|..+.+.... +|++=..+..++.+.+|+. ++.|..... ++.=
T Consensus 47 ~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~-~~~~ 124 (367)
T TIGR02604 47 DRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQIN-NHHH 124 (367)
T ss_pred CEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCC-cccc
Confidence 47888876543 2 222223444567776664444 7877666555566776642 233433110 0011
Q ss_pred ccceEEEcCCCCEEEEEecCCC--------CCc-cccCCceEEEeeecceee
Q 015220 367 NTNNIYITSDQDLIISYCKADS--------DDP-LAEGNGKLFVSLLMFVTC 409 (411)
Q Consensus 367 ~~n~i~Is~Dqd~iiS~~~d~~--------~~~-~~~~~gtI~i~~i~tGk~ 409 (411)
..|.+.+.|||.+.||-..... .+. .....|.|--.|..++++
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~ 176 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL 176 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE
Confidence 3688999999999887663210 011 112237777777766654
No 400
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=20.19 E-value=6.5e+02 Score=24.31 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=59.6
Q ss_pred ceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEecCCc----EEeEee---------eccccCCcceeeeeecc
Q 015220 225 YTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT----VLKSFN---------HLLHRNKKVDFIEQFNE 291 (411)
Q Consensus 225 Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~tG~----~L~t~~---------~LL~h~K~I~FLE~~~e 291 (411)
-...+.+..+.++ +...+|||+++..+...+.|+.+-+..+.+ +.-... +-+.....|.+.-.++.
T Consensus 21 ~~~~l~~~~~~~~-~~~~pGQfv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~k~gd~i~v~GP~G~ 99 (252)
T COG0543 21 DTFLLRLRLPFVA-LTFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGLKEGDKIRVRGPLGN 99 (252)
T ss_pred ceEEEEEeccccc-cccCCCcEEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhccCCCEEEEEcCCCC
Confidence 3445666666666 778899999999999999999999998763 222110 22333344777777777
Q ss_pred eeEEeecCceeeEEEcccce
Q 015220 292 KLLVKQENENLQILDVRNFE 311 (411)
Q Consensus 292 kllIKQe~~~LkI~dL~t~e 311 (411)
..+...-+.++-+..=.+|-
T Consensus 100 ~~~~~~~~~~vlliagGtG~ 119 (252)
T COG0543 100 GFLREKIGKPVLLIAGGTGI 119 (252)
T ss_pred CccccccCCcEEEEecccCH
Confidence 77777666667777777754
No 401
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=20.06 E-value=6.3e+02 Score=22.52 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=42.0
Q ss_pred ceeEEeecCceeeEEEcccceEEEeeccccCCCceEEEEeec--eeEEEE-ecCeEEEEecCCceeeeeccccc
Q 015220 291 EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--QLFLTF-RNRTVAVWNFRGELVTSFEDHLL 361 (411)
Q Consensus 291 ekllIKQe~~~LkI~dL~t~e~~~v~~T~f~hpsAfifLy~s--qlFlSf-sd~tI~iWn~~Gel~~s~e~H~~ 361 (411)
..|++.+++-.|+||+=- -.. .+..-+++++.|... +.|... .||||-+|+-.-.+-|-=.+|..
T Consensus 16 ~eLlvGs~D~~IRvf~~~---e~~---~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~~~ 83 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---EIV---AEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKNQV 83 (111)
T ss_pred ceEEEecCCcEEEEEeCC---cEE---EEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCCCe
Confidence 467999999999999633 222 233334556555543 456655 99999999875555555555554
No 402
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=20.00 E-value=5.5e+02 Score=26.39 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=46.5
Q ss_pred cCCCCeEEeeCCCCeEEEeecC-----CCeEEEEEeeCceEEEEeccCceeEEEEeCCEEEEEEecCCCceeeEEEEec-
Q 015220 192 LKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE- 265 (411)
Q Consensus 192 l~~PgfvEFDd~NGkiLt~~~~-----ds~ykVWdL~~Ys~iysLs~~~VqeIkISdG~~Lai~q~t~~~ipiKIl~I~- 265 (411)
+-+|= |||| ||+.+-+++. -++|++==+.+-+.+++ + --+.|-+|+.|+--+..-..-+..-.+|+
T Consensus 76 ~LYPC--~~de-NG~~i~~s~tPLyl~aGtY~F~~iSPAka~~~---d--gk~~I~NGeYl~aTd~rytqT~st~~~I~~ 147 (310)
T PF15415_consen 76 SLYPC--QFDE-NGKYINSSSTPLYLNAGTYYFRMISPAKASNS---D--GKMNIDNGEYLYATDNRYTQTYSTPCPISK 147 (310)
T ss_pred eeeee--EEcC-CCcEEeccCCceEEecceEEEEEecccccccc---C--ceEEeCCceEEEEcCCceeEEeeeeeeeEe
Confidence 34565 7787 7777533322 45555443333222221 1 12334456655544433333333333332
Q ss_pred ----CCcEE---------eEeeeccccCCcceeeeeecceeEE
Q 015220 266 ----DGTVL---------KSFNHLLHRNKKVDFIEQFNEKLLV 295 (411)
Q Consensus 266 ----tG~~L---------~t~~~LL~h~K~I~FLE~~~ekllI 295 (411)
+-+.+ ..+.++.+-.+.|.-||++.+++=|
T Consensus 148 i~~~nvq~i~LnPii~qtaRm~Fti~~g~gv~tLe~l~aGiEI 190 (310)
T PF15415_consen 148 INENNVQYIYLNPIINQTARMQFTIHKGEGVHTLEMLQAGIEI 190 (310)
T ss_pred eccCCeeEEEeChhhhheeEEEEEEecCCceeeehhhhcccee
Confidence 11111 2455666777777777777777744
Done!