Query 015221
Match_columns 411
No_of_seqs 451 out of 3970
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0541 Ffh Signal recognition 100.0 2E-103 4E-108 774.5 41.7 394 2-396 1-394 (451)
2 KOG0780 Signal recognition par 100.0 6.2E-90 1.3E-94 663.6 36.9 396 1-400 1-396 (483)
3 TIGR01425 SRP54_euk signal rec 100.0 4E-87 8.7E-92 673.5 41.5 393 2-394 1-395 (429)
4 PRK10867 signal recognition pa 100.0 1.1E-82 2.4E-87 645.0 41.9 388 2-394 1-389 (433)
5 TIGR00959 ffh signal recogniti 100.0 3E-81 6.5E-86 634.3 42.3 391 3-394 1-393 (428)
6 PRK00771 signal recognition pa 100.0 3.3E-80 7.2E-85 628.2 41.0 385 6-394 1-385 (437)
7 COG0552 FtsY Signal recognitio 100.0 2.3E-49 4.9E-54 380.9 28.9 290 3-296 34-340 (340)
8 PRK14974 cell division protein 100.0 3.7E-46 8.1E-51 367.7 32.7 295 2-297 1-336 (336)
9 PRK10416 signal recognition pa 100.0 9.2E-44 2E-48 349.6 33.1 285 5-297 26-316 (318)
10 TIGR00064 ftsY signal recognit 100.0 4.7E-43 1E-47 338.1 29.8 264 28-295 3-272 (272)
11 PF00448 SRP54: SRP54-type pro 100.0 4.1E-41 8.8E-46 309.8 21.3 196 101-296 1-196 (196)
12 KOG0781 Signal recognition par 100.0 7E-39 1.5E-43 316.6 22.5 287 8-294 278-585 (587)
13 PRK11889 flhF flagellar biosyn 100.0 4E-35 8.8E-40 290.1 28.0 258 27-297 175-435 (436)
14 PRK12723 flagellar biosynthesi 100.0 1.9E-34 4.1E-39 289.4 31.4 258 30-301 109-373 (388)
15 PRK12726 flagellar biosynthesi 100.0 8.8E-35 1.9E-39 287.0 28.4 254 33-298 145-401 (407)
16 PRK12724 flagellar biosynthesi 100.0 4E-34 8.6E-39 286.5 30.0 264 21-295 146-415 (432)
17 PRK14723 flhF flagellar biosyn 100.0 3.2E-34 7E-39 305.1 29.7 252 30-298 125-382 (767)
18 PRK06995 flhF flagellar biosyn 100.0 1.3E-32 2.9E-37 281.6 29.0 274 4-298 173-450 (484)
19 PRK05703 flhF flagellar biosyn 100.0 1.8E-32 4E-37 279.4 28.9 256 25-298 156-416 (424)
20 PRK06731 flhF flagellar biosyn 100.0 6.5E-32 1.4E-36 259.2 24.0 259 25-297 8-269 (270)
21 COG1419 FlhF Flagellar GTP-bin 100.0 3E-31 6.5E-36 262.4 23.5 191 101-298 203-397 (407)
22 PRK14722 flhF flagellar biosyn 100.0 1.4E-30 3.1E-35 259.5 27.2 252 33-298 77-340 (374)
23 PRK14721 flhF flagellar biosyn 100.0 3.1E-30 6.7E-35 260.7 27.9 248 32-298 134-385 (420)
24 PRK12727 flagellar biosynthesi 100.0 1.5E-27 3.3E-32 244.3 26.0 246 31-297 293-542 (559)
25 cd03115 SRP The signal recogni 99.9 8.2E-26 1.8E-30 203.8 20.6 173 102-274 1-173 (173)
26 COG1159 Era GTPase [General fu 99.9 5.4E-21 1.2E-25 182.1 13.5 191 100-339 5-206 (298)
27 COG0486 ThdF Predicted GTPase 99.8 1E-20 2.2E-25 189.8 13.3 197 7-255 139-339 (454)
28 TIGR03499 FlhF flagellar biosy 99.8 1.1E-18 2.4E-23 169.7 19.5 149 28-193 132-282 (282)
29 PF02978 SRP_SPB: Signal pepti 99.8 7.8E-20 1.7E-24 150.8 7.6 67 327-394 1-71 (104)
30 COG1160 Predicted GTPases [Gen 99.8 9.5E-18 2.1E-22 168.1 14.7 156 102-311 4-164 (444)
31 PRK09435 membrane ATPase/prote 99.7 6.6E-17 1.4E-21 159.7 18.8 193 98-311 53-259 (332)
32 COG1703 ArgK Putative periplas 99.7 8.2E-17 1.8E-21 153.4 16.2 194 96-311 46-253 (323)
33 TIGR00436 era GTP-binding prot 99.7 1.1E-16 2.3E-21 154.8 13.2 187 103-339 2-198 (270)
34 COG1160 Predicted GTPases [Gen 99.7 1.6E-16 3.4E-21 159.3 13.0 212 77-345 154-374 (444)
35 PRK00089 era GTPase Era; Revie 99.7 3.9E-16 8.4E-21 152.4 14.5 190 100-338 4-204 (292)
36 PF03308 ArgK: ArgK protein; 99.7 4.6E-17 1E-21 153.2 7.2 193 98-311 26-229 (266)
37 TIGR00750 lao LAO/AO transport 99.7 2.2E-15 4.9E-20 147.8 18.6 196 98-311 31-237 (300)
38 PRK05291 trmE tRNA modificatio 99.6 6.5E-16 1.4E-20 159.5 11.2 231 7-312 137-370 (449)
39 PRK15494 era GTPase Era; Provi 99.6 3.2E-15 7E-20 149.1 12.6 188 101-339 52-250 (339)
40 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1E-14 2.3E-19 150.0 12.8 211 7-274 129-342 (442)
41 PF02421 FeoB_N: Ferrous iron 99.6 4.4E-15 9.5E-20 131.5 8.6 150 103-307 2-156 (156)
42 KOG1191 Mitochondrial GTPase [ 99.6 1.3E-14 2.9E-19 145.7 13.0 241 8-311 190-449 (531)
43 TIGR03156 GTP_HflX GTP-binding 99.6 3.4E-14 7.3E-19 142.3 14.4 229 8-310 112-350 (351)
44 PRK13768 GTPase; Provisional 99.6 1.2E-13 2.7E-18 132.3 16.3 209 101-313 2-248 (253)
45 cd04163 Era Era subfamily. Er 99.5 2.1E-13 4.7E-18 119.3 14.4 161 101-310 3-167 (168)
46 COG0378 HypB Ni2+-binding GTPa 99.5 7.9E-14 1.7E-18 125.8 10.6 181 102-310 14-199 (202)
47 TIGR00073 hypB hydrogenase acc 99.5 7.8E-13 1.7E-17 122.9 15.1 182 100-311 21-206 (207)
48 cd03114 ArgK-like The function 99.5 8.4E-13 1.8E-17 116.4 12.6 136 103-251 1-148 (148)
49 TIGR03594 GTPase_EngA ribosome 99.4 1.5E-12 3.2E-17 133.8 15.4 157 103-313 1-161 (429)
50 cd02037 MRP-like MRP (Multiple 99.4 4.3E-12 9.2E-17 114.0 14.9 128 104-252 2-133 (169)
51 PF10662 PduV-EutP: Ethanolami 99.4 8.2E-13 1.8E-17 114.8 9.3 137 102-309 2-143 (143)
52 PHA02518 ParA-like protein; Pr 99.4 8.3E-12 1.8E-16 115.4 15.9 153 103-270 2-164 (211)
53 PRK10463 hydrogenase nickel in 99.4 7E-12 1.5E-16 121.3 14.8 180 100-310 103-287 (290)
54 KOG1423 Ras-like GTPase ERA [C 99.4 9.3E-13 2E-17 125.6 8.5 175 100-312 71-271 (379)
55 cd01894 EngA1 EngA1 subfamily. 99.4 7.5E-12 1.6E-16 109.2 13.7 152 105-310 1-156 (157)
56 PRK12298 obgE GTPase CgtA; Rev 99.4 2.5E-12 5.4E-17 130.4 12.1 158 103-313 161-334 (390)
57 PRK03003 GTP-binding protein D 99.4 1.6E-11 3.4E-16 128.0 18.4 166 100-312 210-382 (472)
58 PRK03003 GTP-binding protein D 99.4 5.1E-12 1.1E-16 131.6 14.6 159 101-313 38-200 (472)
59 cd02117 NifH_like This family 99.4 6.6E-12 1.4E-16 117.0 13.7 162 102-270 1-205 (212)
60 TIGR03594 GTPase_EngA ribosome 99.4 1.6E-11 3.5E-16 126.1 17.3 188 77-311 149-343 (429)
61 cd01895 EngA2 EngA2 subfamily. 99.4 1.6E-11 3.4E-16 108.6 14.8 164 101-310 2-173 (174)
62 COG3640 CooC CO dehydrogenase 99.4 1.8E-11 3.9E-16 113.4 15.1 175 103-298 2-232 (255)
63 smart00053 DYNc Dynamin, GTPas 99.4 7.8E-12 1.7E-16 118.5 12.6 153 102-264 27-216 (240)
64 PRK13849 putative crown gall t 99.3 2.7E-11 5.9E-16 114.5 16.1 141 102-252 2-152 (231)
65 PRK11058 GTPase HflX; Provisio 99.3 8.8E-12 1.9E-16 127.8 13.5 156 102-312 198-362 (426)
66 PRK00093 GTP-binding protein D 99.3 3E-11 6.5E-16 124.5 17.6 165 100-311 172-343 (435)
67 PRK00093 GTP-binding protein D 99.3 2.1E-11 4.6E-16 125.6 15.9 156 102-311 2-161 (435)
68 PRK09518 bifunctional cytidyla 99.3 2.3E-11 4.9E-16 132.7 16.7 164 101-312 450-621 (712)
69 cd04164 trmE TrmE (MnmE, ThdF, 99.3 2.3E-11 5E-16 105.9 13.1 150 103-311 3-156 (157)
70 cd03110 Fer4_NifH_child This p 99.3 6.9E-11 1.5E-15 106.9 16.2 155 104-271 2-175 (179)
71 TIGR00101 ureG urease accessor 99.3 4.4E-11 9.6E-16 110.6 14.8 184 101-311 1-195 (199)
72 cd01878 HflX HflX subfamily. 99.3 2.9E-11 6.2E-16 111.5 12.9 154 102-310 42-203 (204)
73 PRK15467 ethanolamine utilizat 99.3 1.1E-11 2.4E-16 110.3 9.7 146 103-314 3-149 (158)
74 cd00881 GTP_translation_factor 99.3 4.3E-11 9.2E-16 107.8 13.7 181 104-312 2-187 (189)
75 TIGR01007 eps_fam capsular exo 99.3 8.4E-11 1.8E-15 108.8 15.9 145 101-253 17-193 (204)
76 TIGR01969 minD_arch cell divis 99.3 4.7E-11 1E-15 113.4 14.5 142 103-253 2-173 (251)
77 PRK09866 hypothetical protein; 99.3 6.2E-11 1.3E-15 124.0 16.0 155 183-352 229-405 (741)
78 PF00009 GTP_EFTU: Elongation 99.3 8.3E-12 1.8E-16 114.0 8.4 178 101-312 3-187 (188)
79 cd02040 NifH NifH gene encodes 99.3 5.5E-11 1.2E-15 114.4 14.5 42 102-143 2-43 (270)
80 PRK09518 bifunctional cytidyla 99.3 2.8E-11 6E-16 132.0 13.7 158 102-313 276-437 (712)
81 cd01898 Obg Obg subfamily. Th 99.3 4.3E-11 9.4E-16 106.3 11.8 153 104-310 3-169 (170)
82 PRK11670 antiporter inner memb 99.3 2E-10 4.3E-15 115.8 17.7 148 100-253 106-282 (369)
83 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 1.2E-10 2.5E-15 103.2 13.6 161 103-311 2-165 (168)
84 cd02036 MinD Bacterial cell di 99.2 1.8E-10 3.8E-15 103.5 14.1 139 104-270 2-146 (179)
85 PRK13185 chlL protochlorophyll 99.2 2.1E-10 4.5E-15 110.7 15.5 159 102-270 3-201 (270)
86 PF01656 CbiA: CobQ/CobB/MinD/ 99.2 4.6E-11 1E-15 108.8 10.3 140 106-253 4-161 (195)
87 TIGR03018 pepcterm_TyrKin exop 99.2 4.1E-10 8.8E-15 104.6 16.8 140 100-248 34-207 (207)
88 CHL00175 minD septum-site dete 99.2 2E-10 4.2E-15 111.6 14.6 146 100-253 14-191 (281)
89 CHL00072 chlL photochlorophyll 99.2 2.7E-10 5.8E-15 111.4 15.2 158 104-271 3-200 (290)
90 PF07015 VirC1: VirC1 protein; 99.2 3.1E-10 6.8E-15 105.9 14.7 137 102-252 2-152 (231)
91 PRK13235 nifH nitrogenase redu 99.2 1.3E-10 2.8E-15 112.6 12.7 41 102-142 2-42 (274)
92 cd02032 Bchl_like This family 99.2 5.1E-10 1.1E-14 107.9 16.8 143 103-252 2-184 (267)
93 TIGR03029 EpsG chain length de 99.2 3.9E-10 8.5E-15 109.1 16.0 143 99-249 101-274 (274)
94 COG0370 FeoB Fe2+ transport sy 99.2 6.4E-11 1.4E-15 124.2 10.9 137 102-274 4-145 (653)
95 KOG1532 GTPase XAB1, interacts 99.2 2.2E-10 4.8E-15 108.0 13.4 241 99-349 17-305 (366)
96 PF03029 ATP_bind_1: Conserved 99.2 9.2E-11 2E-15 111.4 11.1 144 106-254 1-170 (238)
97 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 1.4E-10 3E-15 106.7 11.8 119 103-255 2-131 (196)
98 cd00880 Era_like Era (E. coli 99.2 1.8E-10 3.8E-15 99.3 11.8 157 106-310 1-162 (163)
99 TIGR03371 cellulose_yhjQ cellu 99.2 5.3E-10 1.1E-14 106.0 15.9 145 102-254 2-182 (246)
100 cd01884 EF_Tu EF-Tu subfamily. 99.2 8E-10 1.7E-14 101.9 16.4 125 102-254 3-132 (195)
101 PRK13232 nifH nitrogenase redu 99.2 2.1E-10 4.6E-15 111.0 12.8 42 102-143 2-43 (273)
102 cd01890 LepA LepA subfamily. 99.2 4.5E-10 9.7E-15 100.8 13.7 109 182-312 65-177 (179)
103 TIGR01281 DPOR_bchL light-inde 99.2 5.7E-10 1.2E-14 107.6 14.9 39 103-141 2-40 (268)
104 PRK13230 nitrogenase reductase 99.2 3E-10 6.5E-15 110.3 13.0 40 102-141 2-41 (279)
105 COG2262 HflX GTPases [General 99.2 1.8E-10 4E-15 114.5 11.6 159 100-313 191-357 (411)
106 cd02035 ArsA ArsA ATPase funct 99.2 4.3E-10 9.3E-15 105.3 13.5 146 103-253 1-183 (217)
107 cd01891 TypA_BipA TypA (tyrosi 99.2 5.6E-10 1.2E-14 102.3 14.1 115 182-313 63-193 (194)
108 cd04171 SelB SelB subfamily. 99.2 4.2E-10 9.2E-15 98.9 12.6 155 103-309 2-163 (164)
109 PF01926 MMR_HSR1: 50S ribosom 99.2 3.4E-10 7.4E-15 94.9 11.4 111 103-249 1-116 (116)
110 cd01897 NOG NOG1 is a nucleola 99.2 4.7E-10 1E-14 99.5 13.0 154 103-311 2-167 (168)
111 TIGR02528 EutP ethanolamine ut 99.2 2.5E-10 5.3E-15 98.8 10.8 138 103-308 2-141 (142)
112 COG0218 Predicted GTPase [Gene 99.2 8E-10 1.7E-14 100.6 14.4 159 102-312 25-197 (200)
113 COG1084 Predicted GTPase [Gene 99.2 1.6E-09 3.5E-14 104.9 16.9 118 101-255 168-295 (346)
114 PRK04213 GTP-binding protein; 99.2 7E-10 1.5E-14 101.9 14.0 162 101-314 9-194 (201)
115 cd02033 BchX Chlorophyllide re 99.1 6.8E-10 1.5E-14 110.0 14.7 45 99-143 29-73 (329)
116 TIGR03598 GTPase_YsxC ribosome 99.1 9E-10 1.9E-14 99.6 14.3 117 100-254 17-143 (179)
117 COG0489 Mrp ATPases involved i 99.1 1E-09 2.2E-14 105.9 15.1 147 101-254 57-233 (265)
118 PRK09554 feoB ferrous iron tra 99.1 3.7E-10 8E-15 123.4 13.4 146 102-283 4-160 (772)
119 PRK13234 nifH nitrogenase redu 99.1 4.7E-10 1E-14 109.9 12.8 43 101-143 4-46 (295)
120 cd04168 TetM_like Tet(M)-like 99.1 2.9E-09 6.3E-14 101.1 17.6 201 104-345 2-208 (237)
121 PRK11519 tyrosine kinase; Prov 99.1 1.6E-09 3.4E-14 118.5 17.8 147 99-253 524-701 (719)
122 PRK09841 cryptic autophosphory 99.1 1.4E-09 2.9E-14 119.1 17.3 148 99-254 529-707 (726)
123 cd00550 ArsA_ATPase Oxyanion-t 99.1 1.5E-09 3.4E-14 104.1 15.5 39 102-140 1-39 (254)
124 PRK12299 obgE GTPase CgtA; Rev 99.1 3.6E-10 7.8E-15 112.5 11.3 158 103-312 160-328 (335)
125 PRK10818 cell division inhibit 99.1 2.3E-09 5E-14 103.4 16.6 145 102-254 3-187 (270)
126 TIGR02016 BchX chlorophyllide 99.1 1.1E-09 2.4E-14 107.3 14.4 163 102-272 1-211 (296)
127 cd01879 FeoB Ferrous iron tran 99.1 6.7E-10 1.4E-14 97.1 11.5 113 183-311 42-156 (158)
128 PRK13233 nifH nitrogenase redu 99.1 2E-09 4.3E-14 104.2 15.8 43 102-144 3-46 (275)
129 PRK12297 obgE GTPase CgtA; Rev 99.1 7.8E-10 1.7E-14 113.1 13.4 155 103-313 160-328 (424)
130 cd03112 CobW_like The function 99.1 1.2E-09 2.6E-14 97.3 12.9 144 103-252 2-158 (158)
131 cd04165 GTPBP1_like GTPBP1-lik 99.1 6.9E-10 1.5E-14 104.5 11.8 195 104-309 2-220 (224)
132 PRK10037 cell division protein 99.1 1.9E-09 4.2E-14 103.0 15.0 141 102-254 2-177 (250)
133 TIGR01287 nifH nitrogenase iro 99.1 9.6E-10 2.1E-14 106.4 12.7 42 102-143 1-42 (275)
134 cd04170 EF-G_bact Elongation f 99.1 7.3E-09 1.6E-13 100.0 18.7 155 181-346 61-240 (268)
135 smart00178 SAR Sar1p-like memb 99.1 1.7E-09 3.8E-14 98.3 13.2 159 102-310 18-183 (184)
136 cd01886 EF-G Elongation factor 99.1 1.8E-09 3.9E-14 104.5 14.0 211 104-345 2-241 (270)
137 TIGR01968 minD_bact septum sit 99.1 2.2E-09 4.7E-14 102.5 14.4 143 102-253 2-176 (261)
138 cd04166 CysN_ATPS CysN_ATPS su 99.1 1.9E-09 4.2E-14 100.1 13.5 68 181-254 74-144 (208)
139 PRK13236 nitrogenase reductase 99.1 2.2E-09 4.7E-14 105.3 14.5 42 101-142 6-47 (296)
140 cd02038 FleN-like FleN is a me 99.1 1.7E-09 3.6E-14 94.2 12.1 106 104-255 2-112 (139)
141 PRK12296 obgE GTPase CgtA; Rev 99.1 5.6E-10 1.2E-14 115.7 10.6 152 102-311 160-339 (500)
142 PRK13869 plasmid-partitioning 99.1 3.6E-09 7.8E-14 108.1 16.4 42 101-142 121-163 (405)
143 TIGR03815 CpaE_hom_Actino heli 99.1 1.2E-08 2.6E-13 101.1 19.8 161 100-271 92-284 (322)
144 cd01881 Obg_like The Obg-like 99.1 5.2E-10 1.1E-14 99.6 9.1 152 106-310 1-175 (176)
145 PRK00454 engB GTP-binding prot 99.1 3.4E-09 7.3E-14 96.6 14.4 159 101-312 24-194 (196)
146 cd04160 Arfrp1 Arfrp1 subfamil 99.1 1.4E-09 3.1E-14 96.3 11.4 111 182-309 48-166 (167)
147 cd04156 ARLTS1 ARLTS1 subfamil 99.1 2.4E-09 5.2E-14 94.1 12.8 151 104-309 2-159 (160)
148 cd04154 Arl2 Arl2 subfamily. 99.1 1.5E-09 3.2E-14 97.3 11.7 150 102-308 15-171 (173)
149 TIGR01005 eps_transp_fam exopo 99.1 2.4E-09 5.2E-14 117.8 15.7 148 99-254 544-722 (754)
150 PHA02519 plasmid partition pro 99.1 2.3E-09 5E-14 108.8 14.3 44 99-142 104-149 (387)
151 cd01889 SelB_euk SelB subfamil 99.1 2.2E-09 4.9E-14 98.1 12.7 115 182-312 66-186 (192)
152 PF06564 YhjQ: YhjQ protein; 99.0 7.2E-09 1.6E-13 98.1 16.2 147 102-259 2-182 (243)
153 TIGR02729 Obg_CgtA Obg family 99.0 1.2E-09 2.6E-14 108.5 11.3 154 103-311 159-328 (329)
154 PRK13705 plasmid-partitioning 99.0 6.5E-09 1.4E-13 105.6 16.8 45 99-143 104-150 (388)
155 cd03111 CpaE_like This protein 99.0 2.9E-09 6.2E-14 88.5 11.7 74 104-226 2-77 (106)
156 cd04155 Arl3 Arl3 subfamily. 99.0 3.1E-09 6.6E-14 94.8 12.4 151 101-309 14-172 (173)
157 cd04159 Arl10_like Arl10-like 99.0 3.6E-09 7.8E-14 91.8 12.4 149 104-309 2-158 (159)
158 cd02042 ParA ParA and ParB of 99.0 3.4E-09 7.4E-14 87.1 11.2 72 103-225 1-73 (104)
159 cd01888 eIF2_gamma eIF2-gamma 99.0 4.3E-09 9.4E-14 97.4 13.1 111 184-313 83-200 (203)
160 cd01864 Rab19 Rab19 subfamily. 99.0 2.1E-09 4.5E-14 95.3 10.4 103 184-310 52-164 (165)
161 cd04157 Arl6 Arl6 subfamily. 99.0 4.8E-09 1E-13 92.2 12.6 148 104-309 2-161 (162)
162 cd04169 RF3 RF3 subfamily. Pe 99.0 5.9E-09 1.3E-13 100.8 14.0 216 102-344 3-237 (267)
163 PRK13231 nitrogenase reductase 99.0 2.1E-09 4.6E-14 103.4 10.9 40 102-142 3-42 (264)
164 cd00879 Sar1 Sar1 subfamily. 99.0 4.9E-09 1.1E-13 95.2 12.6 163 101-310 19-189 (190)
165 COG1192 Soj ATPases involved i 99.0 6.1E-09 1.3E-13 99.8 13.7 42 101-142 2-45 (259)
166 TIGR03453 partition_RepA plasm 99.0 5.5E-09 1.2E-13 106.2 14.1 43 100-142 103-146 (387)
167 PF02492 cobW: CobW/HypB/UreG, 99.0 2.4E-09 5.1E-14 97.2 10.1 148 103-255 2-156 (178)
168 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 7.2E-09 1.6E-13 93.2 13.1 151 102-309 16-173 (174)
169 cd01876 YihA_EngB The YihA (En 99.0 1E-08 2.2E-13 89.8 13.6 116 185-311 46-170 (170)
170 cd04158 ARD1 ARD1 subfamily. 99.0 1.1E-08 2.3E-13 91.6 13.6 153 104-314 2-163 (169)
171 cd01853 Toc34_like Toc34-like 99.0 4.4E-09 9.5E-14 100.6 11.7 121 101-256 31-165 (249)
172 cd04145 M_R_Ras_like M-Ras/R-R 99.0 4.7E-09 1E-13 92.5 10.9 154 102-311 3-163 (164)
173 cd00878 Arf_Arl Arf (ADP-ribos 99.0 9.4E-09 2E-13 90.2 12.8 149 104-309 2-157 (158)
174 cd04104 p47_IIGP_like p47 (47- 99.0 6.2E-09 1.4E-13 95.9 12.0 117 184-314 52-186 (197)
175 smart00175 RAB Rab subfamily o 99.0 6.3E-09 1.4E-13 91.5 11.3 150 103-311 2-161 (164)
176 cd04142 RRP22 RRP22 subfamily. 99.0 5.8E-09 1.3E-13 96.3 11.4 161 103-311 2-173 (198)
177 cd00154 Rab Rab family. Rab G 99.0 4.6E-09 1E-13 91.0 10.2 147 103-308 2-158 (159)
178 smart00177 ARF ARF-like small 99.0 1.5E-08 3.2E-13 91.4 13.7 152 102-311 14-173 (175)
179 cd04149 Arf6 Arf6 subfamily. 98.9 1.8E-08 3.9E-13 90.3 14.1 150 102-309 10-167 (168)
180 TIGR00231 small_GTP small GTP- 98.9 4.5E-09 9.8E-14 90.4 9.9 155 102-308 2-160 (161)
181 cd04151 Arl1 Arl1 subfamily. 98.9 8.5E-09 1.8E-13 90.8 11.6 149 104-309 2-157 (158)
182 PF09140 MipZ: ATPase MipZ; I 98.9 5.2E-09 1.1E-13 98.4 10.5 93 103-196 2-111 (261)
183 smart00173 RAS Ras subfamily o 98.9 8.7E-09 1.9E-13 90.9 11.4 149 103-311 2-161 (164)
184 CHL00071 tufA elongation facto 98.9 8.5E-09 1.8E-13 105.6 12.8 130 100-255 11-143 (409)
185 cd01896 DRG The developmentall 98.9 9E-09 1.9E-13 97.5 12.0 89 103-227 2-91 (233)
186 PRK12736 elongation factor Tu; 98.9 1E-08 2.2E-13 104.6 13.2 170 100-312 11-201 (394)
187 cd01861 Rab6 Rab6 subfamily. 98.9 8.2E-09 1.8E-13 90.7 10.6 152 103-310 2-160 (161)
188 cd01863 Rab18 Rab18 subfamily. 98.9 1.8E-08 4E-13 88.6 12.8 149 103-310 2-160 (161)
189 cd01865 Rab3 Rab3 subfamily. 98.9 9.8E-09 2.1E-13 91.2 11.1 150 103-311 3-162 (165)
190 TIGR00437 feoB ferrous iron tr 98.9 5E-09 1.1E-13 111.8 10.8 109 183-310 40-153 (591)
191 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 7.2E-09 1.6E-13 91.9 10.1 151 102-311 3-163 (166)
192 PRK12735 elongation factor Tu; 98.9 2E-08 4.4E-13 102.4 14.6 127 100-254 11-142 (396)
193 cd04113 Rab4 Rab4 subfamily. 98.9 8E-09 1.7E-13 91.0 10.2 103 183-310 48-160 (161)
194 cd04119 RJL RJL (RabJ-Like) su 98.9 1.4E-08 3E-13 89.4 11.4 150 103-311 2-166 (168)
195 TIGR00991 3a0901s02IAP34 GTP-b 98.9 1.6E-08 3.4E-13 98.9 12.5 119 101-254 38-167 (313)
196 cd04138 H_N_K_Ras_like H-Ras/N 98.9 3.2E-08 6.9E-13 86.6 13.3 148 103-310 3-160 (162)
197 cd04161 Arl2l1_Arl13_like Arl2 98.9 1.5E-08 3.2E-13 90.6 11.4 151 104-309 2-166 (167)
198 cd01860 Rab5_related Rab5-rela 98.9 1.2E-08 2.6E-13 89.8 10.6 150 103-311 3-162 (163)
199 PRK00049 elongation factor Tu; 98.9 2.9E-08 6.3E-13 101.2 14.7 126 101-254 12-142 (396)
200 PLN03127 Elongation factor Tu; 98.9 3.3E-08 7.1E-13 102.2 15.0 127 100-254 60-191 (447)
201 cd04137 RheB Rheb (Ras Homolog 98.9 7.5E-09 1.6E-13 93.1 9.1 150 102-311 2-162 (180)
202 cd04136 Rap_like Rap-like subf 98.9 1.7E-08 3.8E-13 88.7 11.2 106 184-311 49-162 (163)
203 cd04150 Arf1_5_like Arf1-Arf5- 98.9 4.4E-08 9.6E-13 86.8 13.9 149 103-309 2-158 (159)
204 TIGR00487 IF-2 translation ini 98.9 2E-08 4.4E-13 106.9 13.7 158 100-309 86-247 (587)
205 TIGR00491 aIF-2 translation in 98.9 1.8E-08 3.8E-13 107.2 13.2 182 100-309 3-213 (590)
206 COG2894 MinD Septum formation 98.9 1.5E-08 3.3E-13 93.0 10.9 163 102-272 3-208 (272)
207 cd01893 Miro1 Miro1 subfamily. 98.9 1.8E-08 4E-13 89.6 11.4 109 183-311 46-163 (166)
208 cd00876 Ras Ras family. The R 98.9 1.4E-08 3E-13 88.7 10.4 147 104-310 2-159 (160)
209 cd04139 RalA_RalB RalA/RalB su 98.9 9.6E-09 2.1E-13 90.2 9.4 104 183-311 47-161 (164)
210 cd01883 EF1_alpha Eukaryotic e 98.9 1.3E-08 2.8E-13 95.4 10.8 67 181-253 74-150 (219)
211 cd01866 Rab2 Rab2 subfamily. 98.9 1.2E-08 2.6E-13 91.0 10.0 151 102-311 5-165 (168)
212 cd01862 Rab7 Rab7 subfamily. 98.9 1.3E-08 2.8E-13 90.3 10.1 104 184-311 49-166 (172)
213 PRK05306 infB translation init 98.9 2.1E-08 4.6E-13 109.4 13.7 159 99-309 288-449 (787)
214 CHL00189 infB translation init 98.9 2.1E-08 4.6E-13 108.6 13.2 165 99-311 242-409 (742)
215 cd04114 Rab30 Rab30 subfamily. 98.9 1.6E-08 3.5E-13 89.7 10.3 106 184-310 56-167 (169)
216 PLN03118 Rab family protein; P 98.9 2E-08 4.3E-13 93.3 11.1 151 101-311 14-176 (211)
217 cd04147 Ras_dva Ras-dva subfam 98.8 2.4E-08 5.2E-13 91.8 11.4 110 184-312 47-163 (198)
218 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.8 6E-08 1.3E-12 88.0 13.9 156 102-311 4-169 (183)
219 PRK04004 translation initiatio 98.8 2.7E-08 5.8E-13 106.1 13.2 63 185-253 72-136 (586)
220 PTZ00133 ADP-ribosylation fact 98.8 6.4E-08 1.4E-12 87.9 14.0 152 102-311 18-177 (182)
221 cd04124 RabL2 RabL2 subfamily. 98.8 2.6E-08 5.6E-13 88.2 11.1 104 183-311 48-157 (161)
222 cd04135 Tc10 TC10 subfamily. 98.8 7.8E-09 1.7E-13 92.3 7.8 120 183-310 47-172 (174)
223 cd01868 Rab11_like Rab11-like. 98.8 1.9E-08 4.1E-13 89.0 10.1 150 102-310 4-163 (165)
224 cd01867 Rab8_Rab10_Rab13_like 98.8 1.8E-08 3.8E-13 89.7 9.8 151 102-311 4-164 (167)
225 PRK05506 bifunctional sulfate 98.8 7.8E-09 1.7E-13 111.5 8.9 68 181-254 101-171 (632)
226 PRK12317 elongation factor 1-a 98.8 2.9E-08 6.3E-13 102.2 12.7 68 181-254 81-153 (425)
227 COG1341 Predicted GTPase or GT 98.8 1.9E-08 4.2E-13 100.2 10.8 121 98-224 70-211 (398)
228 smart00174 RHO Rho (Ras homolo 98.8 1E-08 2.2E-13 91.5 7.9 121 183-311 45-171 (174)
229 TIGR00485 EF-Tu translation el 98.8 6.8E-08 1.5E-12 98.5 14.7 128 100-255 11-143 (394)
230 cd00157 Rho Rho (Ras homology) 98.8 5.7E-09 1.2E-13 92.6 5.8 161 103-309 2-170 (171)
231 PLN00223 ADP-ribosylation fact 98.8 1.1E-07 2.4E-12 86.3 14.3 152 102-311 18-177 (181)
232 COG1163 DRG Predicted GTPase [ 98.8 2.2E-08 4.8E-13 96.8 9.9 104 92-231 54-158 (365)
233 cd02034 CooC The accessory pro 98.8 5.1E-08 1.1E-12 82.4 11.1 88 104-195 2-98 (116)
234 PRK05124 cysN sulfate adenylyl 98.8 1E-08 2.2E-13 106.8 8.2 66 181-254 104-174 (474)
235 cd04123 Rab21 Rab21 subfamily. 98.8 3.7E-08 8E-13 86.2 10.3 103 183-310 48-160 (162)
236 PRK00741 prfC peptide chain re 98.8 5.1E-08 1.1E-12 102.7 13.0 132 100-254 9-145 (526)
237 TIGR01394 TypA_BipA GTP-bindin 98.8 5E-08 1.1E-12 104.1 13.1 173 102-314 2-193 (594)
238 cd01885 EF2 EF2 (for archaea a 98.8 6.1E-08 1.3E-12 91.2 12.2 64 183-253 72-138 (222)
239 cd01870 RhoA_like RhoA-like su 98.8 3.1E-08 6.8E-13 88.4 9.7 166 102-310 2-173 (175)
240 PRK00007 elongation factor G; 98.8 6.3E-08 1.4E-12 105.5 13.8 130 101-254 10-141 (693)
241 TIGR01393 lepA GTP-binding pro 98.8 9E-08 1.9E-12 102.3 14.6 108 183-313 69-181 (595)
242 cd04101 RabL4 RabL4 (Rab-like4 98.8 4.3E-08 9.2E-13 86.5 10.2 104 183-311 51-163 (164)
243 cd04140 ARHI_like ARHI subfami 98.8 1.4E-07 3.1E-12 83.7 13.4 106 183-310 48-163 (165)
244 TIGR00484 EF-G translation elo 98.8 1.7E-07 3.6E-12 102.2 16.6 129 101-254 10-141 (689)
245 TIGR00475 selB selenocysteine- 98.8 2.5E-08 5.4E-13 106.4 9.9 157 103-311 2-165 (581)
246 COG0455 flhG Antiactivator of 98.8 2E-07 4.4E-12 89.6 15.2 146 101-255 2-181 (262)
247 TIGR02034 CysN sulfate adenyly 98.8 3.5E-08 7.5E-13 101.0 10.3 68 181-254 77-147 (406)
248 cd04112 Rab26 Rab26 subfamily. 98.8 8.5E-08 1.8E-12 87.6 11.8 105 183-312 49-163 (191)
249 PRK10512 selenocysteinyl-tRNA- 98.8 8.3E-08 1.8E-12 102.9 13.4 159 103-312 2-166 (614)
250 cd04110 Rab35 Rab35 subfamily. 98.8 6.4E-08 1.4E-12 89.1 11.0 155 102-311 7-166 (199)
251 TIGR00503 prfC peptide chain r 98.8 6.6E-08 1.4E-12 101.8 12.4 134 100-254 10-146 (527)
252 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 5.6E-08 1.2E-12 89.5 10.5 105 183-311 49-167 (201)
253 PRK10218 GTP-binding protein; 98.7 7.6E-08 1.7E-12 102.7 12.9 174 101-313 5-196 (607)
254 cd04175 Rap1 Rap1 subgroup. T 98.7 5.3E-08 1.1E-12 86.1 9.9 107 183-311 48-162 (164)
255 cd01983 Fer4_NifH The Fer4_Nif 98.7 1.1E-07 2.4E-12 75.8 10.8 71 103-226 1-71 (99)
256 cd04127 Rab27A Rab27a subfamil 98.7 3.7E-08 8E-13 88.5 8.8 103 183-310 62-175 (180)
257 cd04109 Rab28 Rab28 subfamily. 98.7 5.2E-08 1.1E-12 90.8 10.1 151 103-311 2-165 (215)
258 cd00882 Ras_like_GTPase Ras-li 98.7 3.8E-08 8.3E-13 83.4 8.4 105 183-308 44-156 (157)
259 cd04144 Ras2 Ras2 subfamily. 98.7 7.4E-08 1.6E-12 87.9 10.7 103 184-311 47-162 (190)
260 cd04106 Rab23_lke Rab23-like s 98.7 7.5E-08 1.6E-12 84.6 10.2 102 183-309 50-160 (162)
261 cd04130 Wrch_1 Wrch-1 subfamil 98.7 4.3E-08 9.3E-13 87.8 8.7 117 184-308 48-170 (173)
262 cd01892 Miro2 Miro2 subfamily. 98.7 3.9E-08 8.5E-13 88.1 8.4 158 101-311 4-165 (169)
263 cd00877 Ran Ran (Ras-related n 98.7 7.8E-08 1.7E-12 85.8 10.2 106 183-311 48-158 (166)
264 PRK05433 GTP-binding protein L 98.7 6.3E-08 1.4E-12 103.6 11.2 171 101-313 7-185 (600)
265 COG0003 ArsA Predicted ATPase 98.7 3E-08 6.5E-13 97.8 8.0 39 101-139 2-40 (322)
266 cd04132 Rho4_like Rho4-like su 98.7 1.2E-07 2.6E-12 85.8 11.4 104 183-311 48-166 (187)
267 PTZ00369 Ras-like protein; Pro 98.7 1.7E-07 3.6E-12 85.5 12.0 150 102-311 6-166 (189)
268 cd04125 RabA_like RabA-like su 98.7 8.3E-08 1.8E-12 87.2 9.9 150 103-311 2-161 (188)
269 cd04176 Rap2 Rap2 subgroup. T 98.7 1.5E-07 3.3E-12 83.0 11.3 106 184-311 49-162 (163)
270 cd04122 Rab14 Rab14 subfamily. 98.7 1.1E-07 2.5E-12 84.3 10.2 103 183-310 50-162 (166)
271 cd01882 BMS1 Bms1. Bms1 is an 98.7 1.5E-07 3.3E-12 88.6 11.5 109 98-255 36-148 (225)
272 PRK11537 putative GTP-binding 98.7 2.6E-07 5.6E-12 91.5 13.6 150 101-256 4-166 (318)
273 PF00025 Arf: ADP-ribosylation 98.7 1.3E-07 2.8E-12 85.5 10.4 153 100-310 13-174 (175)
274 TIGR00993 3a0901s04IAP86 chlor 98.7 1.2E-07 2.6E-12 100.1 11.4 119 101-254 118-250 (763)
275 cd04148 RGK RGK subfamily. Th 98.7 1.5E-07 3.3E-12 88.3 11.1 106 183-311 49-162 (221)
276 KOG1489 Predicted GTP-binding 98.7 1.3E-07 2.9E-12 91.2 10.5 149 104-310 199-365 (366)
277 TIGR03680 eif2g_arch translati 98.7 2.3E-07 5.1E-12 94.9 13.0 112 183-312 79-196 (406)
278 cd04177 RSR1 RSR1 subgroup. R 98.7 3.9E-07 8.4E-12 81.1 12.9 103 184-310 49-162 (168)
279 cd04116 Rab9 Rab9 subfamily. 98.7 9.7E-08 2.1E-12 84.9 9.0 152 101-310 5-169 (170)
280 PRK12739 elongation factor G; 98.7 5.1E-07 1.1E-11 98.4 16.3 131 100-254 7-139 (691)
281 cd04118 Rab24 Rab24 subfamily. 98.7 2.3E-07 5E-12 84.5 11.4 109 184-311 50-165 (193)
282 cd04134 Rho3 Rho3 subfamily. 98.6 6.9E-08 1.5E-12 88.1 7.8 120 183-311 47-173 (189)
283 cd04111 Rab39 Rab39 subfamily. 98.6 1.9E-07 4.2E-12 86.9 10.7 152 102-311 3-165 (211)
284 KOG3022 Predicted ATPase, nucl 98.6 1.8E-07 3.9E-12 88.8 10.4 165 102-272 49-253 (300)
285 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 3.8E-07 8.2E-12 82.0 11.9 104 183-311 49-163 (172)
286 TIGR02836 spore_IV_A stage IV 98.6 2.9E-07 6.3E-12 92.5 12.0 221 100-351 16-284 (492)
287 PTZ00141 elongation factor 1- 98.6 1.8E-07 3.8E-12 96.9 10.9 66 181-252 82-157 (446)
288 PF02881 SRP54_N: SRP54-type p 98.6 3.5E-07 7.7E-12 70.9 10.0 75 6-83 1-75 (75)
289 COG0523 Putative GTPases (G3E 98.6 1.8E-07 3.8E-12 92.6 10.4 148 102-256 2-161 (323)
290 cd04146 RERG_RasL11_like RERG/ 98.6 3.1E-07 6.7E-12 81.3 11.0 104 184-311 47-163 (165)
291 COG3596 Predicted GTPase [Gene 98.6 1.2E-06 2.6E-11 83.4 15.4 184 99-323 37-233 (296)
292 cd04167 Snu114p Snu114p subfam 98.6 2.8E-07 6.1E-12 85.8 11.0 65 183-253 70-136 (213)
293 PRK04000 translation initiatio 98.6 9.9E-07 2.1E-11 90.5 16.0 111 184-313 85-202 (411)
294 cd04162 Arl9_Arfrp2_like Arl9/ 98.6 7.8E-07 1.7E-11 79.2 13.1 107 104-254 2-113 (164)
295 PF00350 Dynamin_N: Dynamin fa 98.6 1.2E-07 2.5E-12 84.4 7.6 66 183-250 100-168 (168)
296 cd04115 Rab33B_Rab33A Rab33B/R 98.6 2.6E-07 5.6E-12 82.5 9.7 114 102-254 3-123 (170)
297 PRK12740 elongation factor G; 98.6 3.1E-07 6.6E-12 99.9 12.1 68 181-254 57-126 (668)
298 PF13614 AAA_31: AAA domain; P 98.6 3.1E-07 6.8E-12 80.8 9.5 115 102-224 1-151 (157)
299 TIGR00483 EF-1_alpha translati 98.6 1.8E-07 3.8E-12 96.4 9.1 67 182-254 83-155 (426)
300 PF04548 AIG1: AIG1 family; I 98.6 1.1E-07 2.5E-12 88.6 7.0 119 103-255 2-131 (212)
301 cd04126 Rab20 Rab20 subfamily. 98.6 6.2E-07 1.3E-11 84.3 11.9 107 103-254 2-114 (220)
302 cd04105 SR_beta Signal recogni 98.6 4.8E-07 1E-11 83.8 10.8 66 183-254 47-123 (203)
303 cd04117 Rab15 Rab15 subfamily. 98.5 1E-06 2.2E-11 78.0 12.2 102 184-310 49-160 (161)
304 PRK13351 elongation factor G; 98.5 9.9E-07 2.1E-11 96.2 14.5 130 101-254 8-139 (687)
305 PF02374 ArsA_ATPase: Anion-tr 98.5 8.4E-08 1.8E-12 94.4 5.5 39 102-140 2-40 (305)
306 cd01874 Cdc42 Cdc42 subfamily. 98.5 2.2E-07 4.7E-12 83.8 7.7 118 183-309 48-172 (175)
307 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 3.3E-07 7.1E-12 82.2 8.9 108 183-311 48-164 (170)
308 PLN03108 Rab family protein; P 98.5 5E-07 1.1E-11 84.0 10.1 154 102-311 7-167 (210)
309 cd01871 Rac1_like Rac1-like su 98.5 3.1E-07 6.8E-12 82.7 8.4 118 183-309 48-172 (174)
310 COG0536 Obg Predicted GTPase [ 98.5 5.5E-07 1.2E-11 87.9 10.5 157 104-312 162-333 (369)
311 PF00142 Fer4_NifH: 4Fe-4S iro 98.5 3.2E-06 7E-11 80.5 15.1 166 102-273 1-208 (273)
312 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.5 5.4E-07 1.2E-11 84.8 9.8 166 102-310 2-174 (222)
313 PLN00043 elongation factor 1-a 98.5 1.4E-06 3E-11 90.3 13.6 67 181-253 82-158 (447)
314 PLN03110 Rab GTPase; Provision 98.5 5E-07 1.1E-11 84.4 9.5 155 102-311 13-173 (216)
315 cd04120 Rab12 Rab12 subfamily. 98.5 6.6E-07 1.4E-11 82.9 9.8 108 183-311 48-162 (202)
316 PF09439 SRPRB: Signal recogni 98.5 9.5E-07 2.1E-11 80.2 10.5 114 101-254 3-126 (181)
317 cd04143 Rhes_like Rhes_like su 98.5 1.1E-06 2.3E-11 84.1 11.2 109 183-311 47-170 (247)
318 PLN03126 Elongation factor Tu; 98.5 1E-06 2.2E-11 91.8 11.9 126 101-254 81-211 (478)
319 cd01875 RhoG RhoG subfamily. 98.5 6.4E-07 1.4E-11 82.0 9.2 121 183-311 50-176 (191)
320 TIGR00347 bioD dethiobiotin sy 98.5 1.2E-06 2.7E-11 78.1 10.9 26 110-135 7-32 (166)
321 cd04128 Spg1 Spg1p. Spg1p (se 98.5 7.7E-07 1.7E-11 80.9 9.6 112 183-311 48-165 (182)
322 PLN03071 GTP-binding nuclear p 98.5 1E-06 2.2E-11 82.5 10.6 153 100-311 12-171 (219)
323 smart00382 AAA ATPases associa 98.5 2.5E-06 5.5E-11 71.6 12.0 92 102-199 3-94 (148)
324 KOG0462 Elongation factor-type 98.5 5.3E-07 1.2E-11 92.4 9.0 172 102-314 61-237 (650)
325 cd01899 Ygr210 Ygr210 subfamil 98.5 1.3E-06 2.9E-11 86.4 11.4 30 285-315 242-272 (318)
326 cd04131 Rnd Rnd subfamily. Th 98.5 9.3E-07 2E-11 80.1 9.4 120 183-309 48-173 (178)
327 KOG1533 Predicted GTPase [Gene 98.5 5.4E-07 1.2E-11 83.7 7.9 36 104-139 5-40 (290)
328 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 1.5E-06 3.3E-11 79.1 10.8 121 183-310 52-178 (182)
329 cd01858 NGP_1 NGP-1. Autoanti 98.4 4.2E-07 9E-12 80.5 6.8 31 101-137 102-132 (157)
330 KOG1145 Mitochondrial translat 98.4 1.2E-05 2.7E-10 82.7 17.5 162 98-310 150-314 (683)
331 cd04121 Rab40 Rab40 subfamily. 98.4 2.7E-06 5.8E-11 78.0 11.6 151 102-311 7-166 (189)
332 COG4917 EutP Ethanolamine util 98.4 8.2E-07 1.8E-11 74.8 7.0 139 102-310 2-144 (148)
333 cd01850 CDC_Septin CDC/Septin. 98.4 2E-06 4.3E-11 83.6 10.9 128 101-255 4-158 (276)
334 KOG0410 Predicted GTP binding 98.4 4.9E-06 1.1E-10 80.7 13.1 150 101-311 178-340 (410)
335 COG1217 TypA Predicted membran 98.4 4.5E-06 9.8E-11 84.3 13.3 175 102-314 6-197 (603)
336 PTZ00327 eukaryotic translatio 98.4 3.5E-06 7.6E-11 87.3 13.1 114 184-314 117-235 (460)
337 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 1.4E-06 3.1E-11 82.4 8.9 167 102-311 14-187 (232)
338 TIGR02475 CobW cobalamin biosy 98.4 5.8E-06 1.3E-10 82.7 13.2 118 102-225 5-135 (341)
339 PRK14493 putative bifunctional 98.3 7.3E-07 1.6E-11 86.4 6.3 89 102-196 2-100 (274)
340 cd04129 Rho2 Rho2 subfamily. 98.3 2.7E-06 5.8E-11 77.4 9.6 116 184-311 49-172 (187)
341 TIGR00490 aEF-2 translation el 98.3 3E-06 6.5E-11 92.8 11.6 66 181-253 83-151 (720)
342 COG1348 NifH Nitrogenase subun 98.3 1.9E-05 4.1E-10 73.5 14.9 166 102-272 2-208 (278)
343 COG1149 MinD superfamily P-loo 98.3 8.8E-06 1.9E-10 77.4 12.5 79 184-272 164-244 (284)
344 PTZ00416 elongation factor 2; 98.3 1.5E-06 3.4E-11 96.4 8.2 65 183-253 91-157 (836)
345 COG0480 FusA Translation elong 98.3 1.6E-05 3.6E-10 85.9 15.7 214 100-344 9-250 (697)
346 PRK12337 2-phosphoglycerate ki 98.3 2E-06 4.3E-11 88.2 8.1 107 30-142 178-292 (475)
347 PTZ00258 GTP-binding protein; 98.3 2.4E-06 5.1E-11 86.5 8.6 103 100-224 20-126 (390)
348 PRK04220 2-phosphoglycerate ki 98.3 2.7E-06 5.9E-11 83.0 8.4 101 35-141 22-128 (301)
349 cd01900 YchF YchF subfamily. 98.3 1.8E-06 3.9E-11 83.6 7.1 95 104-224 1-103 (274)
350 cd01120 RecA-like_NTPases RecA 98.3 8.4E-06 1.8E-10 71.1 10.6 91 104-194 2-96 (165)
351 PRK00090 bioD dithiobiotin syn 98.2 9E-05 1.9E-09 69.3 18.0 146 104-253 2-175 (222)
352 PRK06278 cobyrinic acid a,c-di 98.2 2.3E-05 5E-10 81.4 14.7 189 77-273 214-416 (476)
353 KOG1490 GTP-binding protein CR 98.2 4.6E-06 1E-10 84.9 9.2 139 100-274 167-322 (620)
354 COG1100 GTPase SAR1 and relate 98.2 8.3E-06 1.8E-10 75.6 10.0 114 102-255 6-126 (219)
355 PRK01077 cobyrinic acid a,c-di 98.2 7.3E-05 1.6E-09 77.7 17.9 160 102-271 4-175 (451)
356 PRK13886 conjugal transfer pro 98.2 3.7E-05 8E-10 73.0 14.3 42 102-143 3-45 (241)
357 PRK07560 elongation factor EF- 98.2 1.1E-05 2.4E-10 88.6 12.3 138 80-253 7-152 (731)
358 COG1618 Predicted nucleotide k 98.2 1.2E-05 2.5E-10 71.0 9.9 33 101-133 5-37 (179)
359 COG0532 InfB Translation initi 98.2 1.5E-05 3.3E-10 82.1 12.1 163 99-310 3-168 (509)
360 COG5256 TEF1 Translation elong 98.2 1.6E-05 3.5E-10 79.6 11.9 135 102-254 8-159 (428)
361 PRK09601 GTP-binding protein Y 98.2 5.1E-06 1.1E-10 83.3 8.5 99 102-224 3-107 (364)
362 PF08477 Miro: Miro-like prote 98.2 2.9E-06 6.2E-11 70.8 5.6 20 103-122 1-20 (119)
363 COG2229 Predicted GTPase [Gene 98.2 6E-06 1.3E-10 74.1 7.8 123 101-255 10-136 (187)
364 PLN00116 translation elongatio 98.2 4.7E-06 1E-10 92.7 8.3 65 183-253 97-163 (843)
365 PTZ00132 GTP-binding nuclear p 98.2 3.1E-05 6.7E-10 72.0 12.6 103 183-311 57-167 (215)
366 PRK04296 thymidine kinase; Pro 98.1 2.2E-05 4.8E-10 72.0 11.3 88 102-197 3-92 (190)
367 cd04178 Nucleostemin_like Nucl 98.1 3E-06 6.4E-11 76.6 5.4 31 101-137 117-147 (172)
368 smart00176 RAN Ran (Ras-relate 98.1 1E-05 2.2E-10 74.9 8.8 104 183-311 43-153 (200)
369 cd01851 GBP Guanylate-binding 98.1 1.6E-05 3.5E-10 74.9 10.2 99 100-231 6-109 (224)
370 PF00071 Ras: Ras family; Int 98.1 7.7E-06 1.7E-10 71.8 7.2 103 183-310 47-159 (162)
371 KOG2743 Cobalamin synthesis pr 98.1 3.5E-05 7.7E-10 74.1 12.0 148 100-255 56-226 (391)
372 TIGR02237 recomb_radB DNA repa 98.1 1.9E-05 4.1E-10 73.1 9.9 43 101-143 12-54 (209)
373 cd03109 DTBS Dethiobiotin synt 98.0 0.00015 3.2E-09 62.7 13.9 120 105-271 4-130 (134)
374 KOG1534 Putative transcription 98.0 2.9E-05 6.3E-10 71.3 9.7 37 103-139 5-41 (273)
375 cd04133 Rop_like Rop subfamily 98.0 1.2E-05 2.7E-10 72.7 7.3 119 183-311 48-172 (176)
376 PRK09361 radB DNA repair and r 98.0 2.8E-05 6E-10 72.9 9.8 48 101-148 23-70 (225)
377 cd01124 KaiC KaiC is a circadi 98.0 6.6E-05 1.4E-09 67.8 11.9 37 104-140 2-38 (187)
378 PRK06067 flagellar accessory p 98.0 7.8E-05 1.7E-09 70.4 12.7 39 101-139 25-63 (234)
379 cd01873 RhoBTB RhoBTB subfamil 98.0 6.9E-05 1.5E-09 69.0 12.0 113 183-309 65-193 (195)
380 TIGR03878 thermo_KaiC_2 KaiC d 98.0 0.0001 2.2E-09 71.0 13.4 57 101-157 36-92 (259)
381 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.0 3E-05 6.4E-10 70.3 8.9 156 102-315 23-188 (221)
382 PRK06526 transposase; Provisio 98.0 3.2E-05 6.9E-10 74.3 9.8 78 102-200 99-176 (254)
383 PHA02542 41 41 helicase; Provi 98.0 0.00043 9.2E-09 72.3 18.7 40 102-141 191-230 (473)
384 COG0529 CysC Adenylylsulfate k 98.0 2.3E-05 4.9E-10 70.2 7.9 46 98-143 20-65 (197)
385 PRK08533 flagellar accessory p 98.0 9.5E-05 2.1E-09 69.9 12.7 48 102-149 25-72 (230)
386 cd01849 YlqF_related_GTPase Yl 98.0 9.5E-06 2.1E-10 71.7 5.3 22 101-122 100-121 (155)
387 cd04103 Centaurin_gamma Centau 98.0 4.2E-05 9.2E-10 67.8 9.5 103 184-310 47-157 (158)
388 PRK06696 uridine kinase; Valid 98.0 1.8E-05 3.9E-10 74.3 7.3 45 99-143 20-64 (223)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.3E-05 2.8E-10 69.7 5.8 29 103-137 85-113 (141)
390 PF06414 Zeta_toxin: Zeta toxi 98.0 3.7E-05 8.1E-10 70.9 9.2 92 98-196 12-105 (199)
391 PF13401 AAA_22: AAA domain; P 98.0 3.2E-05 6.9E-10 65.6 7.9 103 101-208 4-111 (131)
392 cd01394 radB RadB. The archaea 98.0 4.9E-05 1.1E-09 70.9 9.8 39 101-139 19-57 (218)
393 cd01855 YqeH YqeH. YqeH is an 97.9 1.2E-05 2.6E-10 73.4 5.4 22 102-123 128-149 (190)
394 TIGR03574 selen_PSTK L-seryl-t 97.9 3.7E-05 8.1E-10 73.4 8.9 38 104-141 2-39 (249)
395 PRK06762 hypothetical protein; 97.9 9.8E-05 2.1E-09 65.7 11.0 38 101-141 2-39 (166)
396 TIGR03596 GTPase_YlqF ribosome 97.9 1.6E-05 3.5E-10 77.2 6.2 32 100-137 117-148 (276)
397 TIGR02012 tigrfam_recA protein 97.9 0.00012 2.5E-09 72.5 12.2 89 101-195 55-145 (321)
398 cd02027 APSK Adenosine 5'-phos 97.9 5.6E-05 1.2E-09 66.5 8.9 40 103-142 1-40 (149)
399 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.3E-05 2.8E-10 78.3 5.3 32 100-137 120-151 (287)
400 PRK00889 adenylylsulfate kinas 97.9 1.7E-05 3.7E-10 71.4 5.4 42 100-141 3-44 (175)
401 PF03205 MobB: Molybdopterin g 97.9 1.7E-05 3.8E-10 69.2 4.9 38 102-139 1-39 (140)
402 PF05049 IIGP: Interferon-indu 97.9 0.00016 3.6E-09 72.7 12.3 118 102-252 36-153 (376)
403 PRK07667 uridine kinase; Provi 97.9 2.5E-05 5.4E-10 71.8 5.9 41 100-140 16-56 (193)
404 PF13671 AAA_33: AAA domain; P 97.8 1.5E-05 3.4E-10 68.7 4.0 34 103-141 1-34 (143)
405 PF01583 APS_kinase: Adenylyls 97.8 1.6E-05 3.6E-10 70.5 4.2 43 101-143 2-44 (156)
406 TIGR00313 cobQ cobyric acid sy 97.8 0.00044 9.5E-09 72.3 15.5 34 104-137 1-35 (475)
407 COG1161 Predicted GTPases [Gen 97.8 2.1E-05 4.6E-10 78.1 5.5 31 101-137 132-162 (322)
408 KOG2749 mRNA cleavage and poly 97.8 0.00032 7E-09 69.1 13.3 159 101-264 103-288 (415)
409 PF13500 AAA_26: AAA domain; P 97.8 0.00047 1E-08 63.3 14.0 160 103-271 2-186 (199)
410 PRK05541 adenylylsulfate kinas 97.8 0.00019 4.2E-09 64.6 11.1 41 100-140 6-46 (176)
411 TIGR02655 circ_KaiC circadian 97.8 0.00012 2.7E-09 76.7 11.2 54 101-158 263-316 (484)
412 COG4108 PrfC Peptide chain rel 97.8 8.7E-05 1.9E-09 74.8 9.2 133 100-256 11-149 (528)
413 cd01121 Sms Sms (bacterial rad 97.8 0.00025 5.5E-09 71.8 12.7 98 81-193 69-168 (372)
414 PF06745 KaiC: KaiC; InterPro 97.8 0.00027 5.8E-09 66.3 11.8 100 101-224 19-124 (226)
415 cd01122 GP4d_helicase GP4d_hel 97.8 0.00038 8.3E-09 67.0 12.9 116 102-223 31-148 (271)
416 PRK05439 pantothenate kinase; 97.8 6.8E-05 1.5E-09 73.8 7.7 44 98-141 83-128 (311)
417 COG4240 Predicted kinase [Gene 97.8 0.0001 2.3E-09 68.5 8.4 45 97-141 46-91 (300)
418 TIGR00176 mobB molybdopterin-g 97.8 2.9E-05 6.2E-10 69.0 4.5 37 103-139 1-37 (155)
419 COG0481 LepA Membrane GTPase L 97.8 5.2E-05 1.1E-09 77.0 6.8 109 182-313 74-187 (603)
420 PRK09602 translation-associate 97.8 7.5E-05 1.6E-09 76.2 8.1 21 102-122 2-22 (396)
421 cd00983 recA RecA is a bacter 97.8 0.00032 7E-09 69.5 12.2 38 101-138 55-92 (325)
422 COG0050 TufB GTPases - transla 97.8 0.00051 1.1E-08 66.2 13.0 126 102-255 13-143 (394)
423 PF13245 AAA_19: Part of AAA d 97.8 6.9E-05 1.5E-09 58.4 6.0 46 102-150 11-60 (76)
424 COG5192 BMS1 GTP-binding prote 97.7 0.0003 6.6E-09 72.7 12.1 109 100-261 68-184 (1077)
425 PRK04328 hypothetical protein; 97.7 0.00075 1.6E-08 64.6 14.3 39 101-139 23-61 (249)
426 cd02029 PRK_like Phosphoribulo 97.7 0.0001 2.3E-09 70.7 8.2 41 103-143 1-41 (277)
427 PRK15453 phosphoribulokinase; 97.7 0.00015 3.3E-09 70.2 9.4 43 100-142 4-46 (290)
428 PF00735 Septin: Septin; Inte 97.7 5.2E-05 1.1E-09 73.9 6.1 41 214-255 114-157 (281)
429 cd02028 UMPK_like Uridine mono 97.7 3.3E-05 7.1E-10 70.2 4.4 39 103-141 1-39 (179)
430 cd04102 RabL3 RabL3 (Rab-like3 97.7 0.00042 9.2E-09 64.2 11.8 20 103-122 2-21 (202)
431 PF08433 KTI12: Chromatin asso 97.7 0.00026 5.6E-09 68.6 10.6 106 103-224 3-108 (270)
432 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00025 5.3E-09 67.3 10.2 39 101-139 21-59 (237)
433 PF03193 DUF258: Protein of un 97.7 3.7E-05 8.1E-10 68.5 4.2 21 102-122 36-56 (161)
434 cd03116 MobB Molybdenum is an 97.7 6.1E-05 1.3E-09 67.2 5.5 39 102-140 2-40 (159)
435 PF13481 AAA_25: AAA domain; P 97.7 0.00035 7.7E-09 63.5 10.7 48 102-149 33-90 (193)
436 KOG0073 GTP-binding ADP-ribosy 97.7 0.00025 5.4E-09 62.6 9.0 108 101-253 16-130 (185)
437 PRK05632 phosphate acetyltrans 97.7 0.001 2.3E-08 72.6 16.0 141 103-253 4-155 (684)
438 COG5019 CDC3 Septin family pro 97.7 0.00023 5.1E-09 70.5 9.9 147 98-272 20-200 (373)
439 PRK09270 nucleoside triphospha 97.7 8E-05 1.7E-09 70.2 6.4 44 98-141 30-74 (229)
440 PRK12289 GTPase RsgA; Reviewed 97.7 4.4E-05 9.5E-10 76.7 4.8 21 102-122 173-193 (352)
441 PRK05480 uridine/cytidine kina 97.7 6.4E-05 1.4E-09 69.7 5.6 41 99-141 4-44 (209)
442 PHA00729 NTP-binding motif con 97.7 0.00045 9.7E-09 64.9 11.2 25 102-126 18-42 (226)
443 TIGR00041 DTMP_kinase thymidyl 97.7 0.00041 9E-09 63.3 10.9 37 101-137 3-39 (195)
444 PF13604 AAA_30: AAA domain; P 97.7 0.00015 3.3E-09 66.8 8.0 105 102-224 19-131 (196)
445 TIGR03600 phage_DnaB phage rep 97.7 0.0028 6E-08 65.3 18.2 116 101-223 194-313 (421)
446 PRK08760 replicative DNA helic 97.7 0.0027 5.9E-08 66.4 18.1 115 101-223 229-347 (476)
447 PRK08233 hypothetical protein; 97.7 0.00013 2.9E-09 65.5 7.4 37 101-141 3-39 (182)
448 TIGR02238 recomb_DMC1 meiotic 97.7 0.00093 2E-08 66.1 13.8 45 101-145 96-147 (313)
449 COG1763 MobB Molybdopterin-gua 97.6 5.1E-05 1.1E-09 67.6 4.3 37 101-137 2-38 (161)
450 TIGR00379 cobB cobyrinic acid 97.6 0.0019 4.2E-08 67.1 16.6 157 104-271 2-172 (449)
451 PRK12288 GTPase RsgA; Reviewed 97.6 2.6E-05 5.7E-10 78.1 2.7 28 103-136 207-234 (347)
452 PRK11823 DNA repair protein Ra 97.6 0.0006 1.3E-08 70.7 12.8 98 81-193 67-166 (446)
453 TIGR03881 KaiC_arch_4 KaiC dom 97.6 0.0012 2.7E-08 61.9 13.9 39 101-139 20-58 (229)
454 PRK10751 molybdopterin-guanine 97.6 7.3E-05 1.6E-09 67.5 5.3 39 100-138 5-43 (173)
455 TIGR00416 sms DNA repair prote 97.6 0.00059 1.3E-08 70.9 12.7 98 81-193 81-180 (454)
456 cd02021 GntK Gluconate kinase 97.6 0.0004 8.6E-09 60.7 9.9 37 103-144 1-37 (150)
457 PRK07952 DNA replication prote 97.6 0.00044 9.5E-09 66.0 10.8 35 103-137 101-135 (244)
458 cd00009 AAA The AAA+ (ATPases 97.6 0.00096 2.1E-08 56.3 12.0 40 102-141 20-59 (151)
459 PTZ00035 Rad51 protein; Provis 97.6 0.001 2.2E-08 66.5 13.8 48 101-148 118-172 (337)
460 COG1797 CobB Cobyrinic acid a, 97.6 0.0011 2.3E-08 67.4 13.7 154 104-271 3-173 (451)
461 cd01131 PilT Pilus retraction 97.6 0.00096 2.1E-08 61.5 12.6 82 102-193 2-84 (198)
462 cd02025 PanK Pantothenate kina 97.6 6.3E-05 1.4E-09 70.7 4.7 39 103-141 1-41 (220)
463 TIGR03575 selen_PSTK_euk L-ser 97.6 0.00097 2.1E-08 66.6 13.3 38 104-141 2-40 (340)
464 PRK05595 replicative DNA helic 97.6 0.0037 8E-08 64.9 18.2 115 101-223 201-319 (444)
465 cd00984 DnaB_C DnaB helicase C 97.6 0.0011 2.4E-08 62.5 13.3 39 102-140 14-53 (242)
466 PRK14494 putative molybdopteri 97.6 5.7E-05 1.2E-09 71.2 4.3 36 102-137 2-37 (229)
467 PRK05973 replicative DNA helic 97.6 0.00056 1.2E-08 64.9 11.0 39 101-139 64-102 (237)
468 PF13207 AAA_17: AAA domain; P 97.6 6.2E-05 1.3E-09 63.1 4.0 32 103-139 1-32 (121)
469 PLN02796 D-glycerate 3-kinase 97.6 0.00032 6.9E-09 69.9 9.6 42 100-141 99-140 (347)
470 PRK06893 DNA replication initi 97.6 0.00028 6.1E-09 66.6 8.9 36 102-137 40-75 (229)
471 PRK12374 putative dithiobiotin 97.6 0.0036 7.8E-08 59.1 16.5 146 103-253 4-177 (231)
472 KOG2825 Putative arsenite-tran 97.6 0.00027 5.9E-09 66.6 8.5 40 102-141 20-59 (323)
473 COG1066 Sms Predicted ATP-depe 97.6 0.00033 7E-09 70.5 9.5 97 79-191 78-176 (456)
474 PRK00784 cobyric acid synthase 97.6 0.0033 7.1E-08 66.1 17.3 34 103-136 4-38 (488)
475 KOG1144 Translation initiation 97.6 0.00065 1.4E-08 72.3 11.7 123 100-252 474-604 (1064)
476 cd01393 recA_like RecA is a b 97.6 0.00032 6.9E-09 65.6 8.8 38 101-138 19-62 (226)
477 cd01856 YlqF YlqF. Proteins o 97.6 0.00014 3E-09 65.4 6.0 22 101-122 115-136 (171)
478 PRK05748 replicative DNA helic 97.6 0.006 1.3E-07 63.4 19.0 116 101-223 203-322 (448)
479 PF00485 PRK: Phosphoribulokin 97.5 7.9E-05 1.7E-09 68.4 4.3 39 103-141 1-43 (194)
480 cd02019 NK Nucleoside/nucleoti 97.5 0.00011 2.4E-09 56.0 4.3 33 103-137 1-33 (69)
481 KOG0092 GTPase Rab5/YPT51 and 97.5 0.00061 1.3E-08 61.8 9.7 156 102-316 6-171 (200)
482 cd02023 UMPK Uridine monophosp 97.5 9.2E-05 2E-09 68.0 4.4 37 103-141 1-37 (198)
483 PRK08181 transposase; Validate 97.5 0.00072 1.6E-08 65.5 10.6 77 103-200 108-184 (269)
484 TIGR00157 ribosome small subun 97.5 0.00012 2.7E-09 69.8 5.1 21 102-122 121-141 (245)
485 KOG0461 Selenocysteine-specifi 97.5 0.00052 1.1E-08 67.4 9.3 171 103-311 9-192 (522)
486 TIGR00554 panK_bact pantothena 97.5 0.00014 3.1E-09 71.0 5.6 43 99-141 60-104 (290)
487 cd01859 MJ1464 MJ1464. This f 97.5 0.0003 6.5E-09 61.9 7.1 38 77-122 85-122 (156)
488 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.0011 2.4E-08 62.1 11.2 53 101-157 16-68 (224)
489 PLN03187 meiotic recombination 97.5 0.0022 4.7E-08 64.3 13.8 48 101-148 126-180 (344)
490 PRK09354 recA recombinase A; P 97.5 0.0014 3E-08 65.5 12.4 88 101-195 60-150 (349)
491 PRK13796 GTPase YqeH; Provisio 97.5 0.00029 6.3E-09 71.2 7.7 22 102-123 161-182 (365)
492 COG2019 AdkA Archaeal adenylat 97.5 0.0004 8.6E-09 61.8 7.4 25 101-125 4-28 (189)
493 PF01695 IstB_IS21: IstB-like 97.5 0.00056 1.2E-08 62.1 8.6 77 102-199 48-124 (178)
494 PRK03846 adenylylsulfate kinas 97.5 0.00016 3.5E-09 66.6 5.2 43 100-142 23-65 (198)
495 KOG1486 GTP-binding protein DR 97.5 8.1E-05 1.8E-09 70.1 3.1 91 100-227 61-153 (364)
496 PRK12422 chromosomal replicati 97.5 0.0015 3.2E-08 67.9 12.7 36 103-138 143-178 (445)
497 TIGR00665 DnaB replicative DNA 97.5 0.022 4.8E-07 58.8 21.6 115 101-223 195-313 (434)
498 PF00004 AAA: ATPase family as 97.5 0.0003 6.6E-09 59.3 6.4 31 104-137 1-31 (132)
499 PLN00023 GTP-binding protein; 97.4 0.00063 1.4E-08 67.3 9.3 21 102-122 22-42 (334)
500 PRK08506 replicative DNA helic 97.4 0.021 4.6E-07 59.7 21.2 116 101-223 192-310 (472)
No 1
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-103 Score=774.51 Aligned_cols=394 Identities=40% Similarity=0.633 Sum_probs=380.2
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||++|+++|++++++|+|+++++|++|++.++|||++||+||||+.+|++|++++++++.+++++++++|+++++++|++
T Consensus 1 m~e~L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~e 80 (451)
T COG0541 1 MFESLSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYE 80 (451)
T ss_pred ChHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec
Q 015221 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (411)
Q Consensus 82 ~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~ 161 (411)
||+++|+++..++.+...+|.+|++||++|+||||+++|||.||+++|++|++|+||+|||+|++||++++++.++|||+
T Consensus 81 ELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 81 ELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred HHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 99999997666666667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCC
Q 015221 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (411)
Q Consensus 162 ~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~ 241 (411)
..++.+|++++++++++++..+||++|||||||++.++++|.|++.+...++||+++||+|++.||++.++++.|++.++
T Consensus 161 ~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 161 SGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHH
Q 015221 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (411)
Q Consensus 242 ~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (411)
++|+|+||+|+++++|++||+.+.+|.||+|+|+||++++|++|+|++++||++||||+.+|+|++++.+++++++++.+
T Consensus 241 itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~~~~d~e~a~~~~~ 320 (451)
T COG0541 241 ITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAEEVVDEEEAEKLAE 320 (451)
T ss_pred CceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccHHH
Q 015221 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMCFA 396 (411)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~~~ 396 (411)
++.+|+|||+||++|+++|+||||+++|++||||++ ...+....+.+|++++||+|||+|||++||+||..|+.
T Consensus 321 kl~~g~FtL~Df~~Ql~~m~kmGpl~~ll~miPG~~-~~~~~~~~~~~e~~~kr~~aIi~SMT~~Er~nP~ii~~ 394 (451)
T COG0541 321 KLKKGKFTLEDFLEQLEQMKKMGPLSKLLSMIPGMG-MKDSDKDIELDEKKLKRIEAIIDSMTPEERENPDIINA 394 (451)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCCHHHHHHhCCCCC-CCCchhhhhccHHHHHHHHHHHHcCCHHHhhCccccCh
Confidence 999999999999999999999999999999999998 23333345678999999999999999999999999973
No 2
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-90 Score=663.60 Aligned_cols=396 Identities=69% Similarity=1.049 Sum_probs=384.1
Q ss_pred CchhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHH
Q 015221 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (411)
Q Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (411)
|+++.|+.+++++|+++.....++++.++..++||+++||++||++.+|.++.+++++.+...++..++++++.+.++++
T Consensus 1 mvla~lGrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf 80 (483)
T KOG0780|consen 1 MVLAELGRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVF 80 (483)
T ss_pred CchHHhchhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 81 ~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
+||+.++++...++.+.+++|.+|+|||.+|+||||++.+||+|++++|+++++|++|+||+||++||+.++++.+||||
T Consensus 81 ~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 81 DELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred HHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 161 ~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
+.+++.||+.++.+++..++.++||+||+||+||++.+..+++||..+..++.||.++||+|++.||.+..+++.|++.+
T Consensus 161 gsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 161 GSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred ecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHH
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (411)
.+.++|+||+|+++++|+++|+.+.++.||.||||||+++||++|+|..|+|+++|+||+..|+|++++.. .++++++.
T Consensus 241 dvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~ 319 (483)
T KOG0780|consen 241 DVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELV 319 (483)
T ss_pred ccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HhhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccHHHHHHh
Q 015221 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMCFAFINN 400 (411)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~~~~~~~ 400 (411)
+++.+|+||++|||+|++.+.||||++++++|||||+ +++...+++++.++|||.++|+|||++|+++| -+|.+--+
T Consensus 320 ~kl~~gkFtlrd~y~Qfq~imkmGp~s~v~~MiPG~s--~m~~~~e~Es~~~~krm~~mmDsMt~~Elds~-~~f~~~p~ 396 (483)
T KOG0780|consen 320 EKLKQGKFTLRDFYDQFQNIMKMGPLSQVLGMIPGMS--MMSKGNEEESSAKLKRMMTMMDSMTDEELDSP-ELFVEEPS 396 (483)
T ss_pred HHHHhCCccHHHHHHHHHHHHhhCCHHHHHhhCCCcc--cCCCcchhHHHHHHHHHHHHHHhcChhhccCc-cccccCch
Confidence 9999999999999999999999999999999999998 45666677889999999999999999999999 77776433
No 3
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=4e-87 Score=673.46 Aligned_cols=393 Identities=68% Similarity=1.073 Sum_probs=371.4
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
+|++|+++|+++|++|+|++++||+++++.+++|+.+|+++||+++++++|++++++++.++++..+.+|.++++++|++
T Consensus 1 ~l~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~ 80 (429)
T TIGR01425 1 VLADLGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFK 80 (429)
T ss_pred ChhHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec
Q 015221 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (411)
Q Consensus 82 ~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~ 161 (411)
+|.+++++...++....++|.+|+++|++||||||++++||.+++++|++|++|++|+||++|++||+.++++.++|++.
T Consensus 81 ~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 81 ELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred HHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 99999998777776766778999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCC
Q 015221 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (411)
Q Consensus 162 ~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~ 241 (411)
.....||+.++.+++++++..+||+|||||||+++.+..++.|+..+.....|++++||+|++.|+++.+++..|++.++
T Consensus 161 ~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~ 240 (429)
T TIGR01425 161 SYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVD 240 (429)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccC
Confidence 78888999999999999988899999999999999999999999999999999999999999999999999999998889
Q ss_pred ceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHH
Q 015221 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (411)
Q Consensus 242 ~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (411)
++++|+||+|++.++|+++++...++.||.|+++||+++|+++|+|.+++|+++|+||+.+|+|++++.+++++++++.+
T Consensus 241 ~~g~IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmgDi~~L~ek~~~~~~~~~~~~~~~ 320 (429)
T TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMGDIEGLIDKVQDLKLDDNEKALIE 320 (429)
T ss_pred CcEEEEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCCCcHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred hhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcC--cccH
Q 015221 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQL--LFMC 394 (411)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~--~~~~ 394 (411)
++++|+||++||++|+++|+||||+++|++||||+++.+.++...+.++++|+||++||+|||++||+| |..+
T Consensus 321 k~~~~~f~l~D~~~q~~~i~kmG~~~~i~~m~Pg~~~~~~~~~~~~~~~~~~~~~~aii~SMT~~Er~~~~p~i~ 395 (429)
T TIGR01425 321 KLKEGTFTLRDMYEQFQNLLKMGPLGQILSMIPGFSTDFMSKGNEEESMAKIKKLMTIMDSMTDQELDSTDGKVF 395 (429)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCHHHHHHhCcCcchhhhhhhcccccHHHHHhHHHHHhcCCHHHHccCCCccc
Confidence 999999999999999999999999999999999998312122223568899999999999999999999 7655
No 4
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=1.1e-82 Score=644.98 Aligned_cols=388 Identities=35% Similarity=0.564 Sum_probs=368.0
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||++|+++|++++++++|++.++|+++++.+++|+.+|+++||+++++++|++++++++.++++..+++|.++++++|++
T Consensus 1 mf~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (433)
T PRK10867 1 MFESLSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVND 80 (433)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 82 ~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
+|.+++++...++....++|.+|+++|++||||||++.+||.+|+++ |++|++|++|+||+++++||+.++++.++|++
T Consensus 81 el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 81 ELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred HHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 99999987666666666678999999999999999999999999988 99999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 161 ~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
......+|..++.++++.++..+||+|||||||+.+.++.++.++..+.....|+.+++|+|++.++++.+++..|++.+
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~ 240 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEAL 240 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhC
Confidence 87777899999999999888889999999999999999999999999999999999999999999999999999999888
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHH
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (411)
+++++|+||+|++.++|.++++...+++||.|+++||+++||++|+|.+++++++|+||+.+|+|++++.+++++++++.
T Consensus 241 ~i~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l~e~~~~~~~~~~~~~~~ 320 (433)
T PRK10867 241 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEVVDEEKAEKLA 320 (433)
T ss_pred CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred HhhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+++.+|+||++||++|+++++||||+++||+||||+++ +.+ +.++++++||++||+|||++||+||..+
T Consensus 321 ~~~~~g~f~l~d~~~q~~~~~kmG~~~~~~~m~Pg~~~-~~~----~~~~~~~~~~~~ii~SMt~~Er~~p~~~ 389 (433)
T PRK10867 321 KKLKKGKFDLEDFLEQLQQMKKMGGLGSLLGMLPGMGN-MKA----QLDDKELKRIEAIINSMTPKERANPDIL 389 (433)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCCCccc-ccc----cccHHHHHHHHHHHHcCCHHHHhCcccc
Confidence 99999999999999999999999999999999999983 422 3578999999999999999999999966
No 5
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=3e-81 Score=634.33 Aligned_cols=391 Identities=35% Similarity=0.577 Sum_probs=366.8
Q ss_pred hhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHH
Q 015221 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (411)
Q Consensus 3 ~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 82 (411)
|++|+++|++++++|+|++.++|+++++.+++|+.+|+++||+++++++|++++++++.++++..+++|.++++++++++
T Consensus 1 ~~~L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~e 80 (428)
T TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80 (428)
T ss_pred CchHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCcCcchHHHHHHHhhhhcCcceec
Q 015221 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (411)
Q Consensus 83 L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~ 161 (411)
|.+++++...++.+..++|.+++++|++||||||++.+||.++. +.|++|++|++|+|||++.+||+.++.+.++|++.
T Consensus 81 L~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 81 LVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred HHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 99999876555655566789999999999999999999999987 57999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCC
Q 015221 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (411)
Q Consensus 162 ~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~ 241 (411)
.....+|.+++.++++.+...+||+|||||||+.+.++.++.++..+.....|+.+++|+|+++++++.+++..|.+.++
T Consensus 161 ~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~ 240 (428)
T TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240 (428)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCC
Confidence 77778899999999998888899999999999999999999999999999999999999999999999999999998889
Q ss_pred ceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHH
Q 015221 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (411)
Q Consensus 242 ~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (411)
++++|+||+|++.++|.++++...+++||.|+++||+++|+++|+|.+++++++|+||+.+|+|++++.+++++++++.+
T Consensus 241 i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e~~~~~~~~~~~~~~~~ 320 (428)
T TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320 (428)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCCChHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred hhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccc-cchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKG-REKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~-~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
++++|+||++||++|+++++||||+++|++||||+++ +.+.. ..+.++++++||++||+|||++||+||..+
T Consensus 321 ~~~~~~f~l~d~~~q~~~~~kmG~~~~~~~~~Pg~~~-~~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~ 393 (428)
T TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGG-VKPSLSDLELDEKQFKRIEAIISSMTPEERRNPKIL 393 (428)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHhCcCccc-cccccccccccHHHHHHHHHHHHcCCHHHHhCcccc
Confidence 9999999999999999999999999999999999984 32111 124678999999999999999999999976
No 6
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=3.3e-80 Score=628.20 Aligned_cols=385 Identities=46% Similarity=0.746 Sum_probs=359.6
Q ss_pred HHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHh
Q 015221 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCK 85 (411)
Q Consensus 6 l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 85 (411)
|+++|+++|++++|++++||+++++.+++|+.+|+++||+++++++|++++++++.+++++.++++.++++++|+++|.+
T Consensus 1 l~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 80 (437)
T PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80 (437)
T ss_pred CchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC
Q 015221 86 MLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165 (411)
Q Consensus 86 ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~ 165 (411)
++++...++... .+|.+|+++|++||||||++.+||.+|+++|++|++|++|+||+++++|++.++.+.++|++.....
T Consensus 81 ~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~ 159 (437)
T PRK00771 81 LLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN 159 (437)
T ss_pred HhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc
Confidence 998765544333 5689999999999999999999999999999999999999999999999999999999999887667
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEE
Q 015221 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (411)
Q Consensus 166 ~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~v 245 (411)
.+|..++.++++++. ++|+|||||||+++.+..+++|+..+.....||.+++|+|++.++++.+.++.|++.+++.++
T Consensus 160 ~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~l~i~gv 237 (437)
T PRK00771 160 KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGGI 237 (437)
T ss_pred cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhcCCCCEE
Confidence 789988888888875 469999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHHhhhc
Q 015221 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSE 325 (411)
Q Consensus 246 IlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~ 325 (411)
|+||+|++.++|+++++...++.||.|+|+||+++||++|+|.+++++++||||+.+|+|++++.+++++++++.+++.+
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~~~~~~~~~~~~~~~~~~~ 317 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMMK 317 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 326 GNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 326 ~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
|+||++||++|+++++||||+++|++||||+++ .+++...+.++++++||+|||+|||++||+||..+
T Consensus 318 ~~f~l~d~~~q~~~~~kmG~~~~~~~m~pg~~~-~~~~~~~~~~~~~~~~~~~ii~SMt~~Er~~p~~~ 385 (437)
T PRK00771 318 GKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGG-KLPDEALEVTEEKLKKYKAIMDSMTEEELENPEII 385 (437)
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHhCcCccc-cchhhhhcccHHHHHHHHHHHHcCCHHHHhCcccc
Confidence 999999999999999999999999999999984 33332235689999999999999999999999965
No 7
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-49 Score=380.89 Aligned_cols=290 Identities=32% Similarity=0.542 Sum_probs=251.0
Q ss_pred hhhHHHHHHHHHHHhhc------CCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-hcccccccCCChhHHH
Q 015221 3 LAQLGGSISRAIQQMSN------ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKI-VNLDDLAAGHNKRRII 75 (411)
Q Consensus 3 ~~~l~~~l~~~~~~l~~------~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (411)
|+.+.+.|....+.+.. .....++..++.++++...|+++||.++++..++++++.. ..... +...+.+
T Consensus 34 ~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~----~~~~~~v 109 (340)
T COG0552 34 FERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK----IKDEETV 109 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhccccc----CCCHHHH
Confidence 34455544444433332 2334556677788999999999999999999999999985 33222 2235677
Q ss_pred HHHHHHHHHhhcCCCCC----CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHh
Q 015221 76 QQAIFNELCKMLDPGKP----SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN 151 (411)
Q Consensus 76 ~~~v~~~L~~ll~~~~~----~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~ 151 (411)
...+.+.+.+++.+... ......++|.+|+|+|-.|+||||+++|||+||+++|++|+++++|+||+||++||+.|
T Consensus 110 ~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w 189 (340)
T COG0552 110 KEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVW 189 (340)
T ss_pred HHHHHHHHHHHhcccccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH
Confidence 78888889999886322 22233567999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcC------CCeeEEEeeCcc
Q 015221 152 ATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSI 225 (411)
Q Consensus 152 ~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~------~d~vllVvda~~ 225 (411)
++|.|+++.....+.||..++.+++++++..+||++|||||||.++...+|.||.++.+... |+++++|+||++
T Consensus 190 ~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 190 GERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred HHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 99999999886678999999999999999999999999999999999999999999988773 566999999999
Q ss_pred hhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC
Q 015221 226 GQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 226 g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g 296 (411)
||+++.+++.|++.++++|+|+||+|++++||.++++.+.+++||+|+|.||+++||.+|++..|+.++++
T Consensus 270 Gqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 270 GQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred ChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764
No 8
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=3.7e-46 Score=367.71 Aligned_cols=295 Identities=35% Similarity=0.620 Sum_probs=269.1
Q ss_pred chhhHHHHHHHHHHHhhcC------------------------------------CcCCHHhHHHHHHHHHHHHHHCCCC
Q 015221 2 VLAQLGGSISRAIQQMSNA------------------------------------TIIDEKVLNECLNEITRALLQADVQ 45 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~------------------------------------~~~~e~~i~~~l~~i~~~Ll~~dv~ 45 (411)
||+.|.++|++..+++... ..++|+++++.+++|+..|+++||+
T Consensus 1 ~f~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Ll~~dv~ 80 (336)
T PRK14974 1 MFDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLESDVA 80 (336)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccCHHHHHHhcccCHHHHHHHHHHHHHHHHHCCCC
Confidence 5888999888888886543 2289999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCC-----CCCCCCeEEEEEcCCCCcHHHHHHH
Q 015221 46 FKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFT-----PKKGKPSVIMFVGLQGSGKTTTCTK 120 (411)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~-----~~~~~~~vI~lvG~~GvGKTTl~~k 120 (411)
.+++.++++++++.+.+.++..+.++.+.+.+.++++|.++++... .+. ...++|.+|+|+|++||||||++++
T Consensus 81 ~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 81 LEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGD-LFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCc-chhhhhhhhccCCCeEEEEEcCCCCCHHHHHHH
Confidence 9999999999999988888777778888899999999999997543 111 1244688999999999999999999
Q ss_pred HHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHH
Q 015221 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAA 200 (411)
Q Consensus 121 La~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~ 200 (411)
||.++..+|++|+++++|+||+++.+|++.++.+.++|++......+|..++.++++.+...++|+|||||||+.+.+..
T Consensus 160 LA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~ 239 (336)
T PRK14974 160 LAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDAN 239 (336)
T ss_pred HHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHH
Confidence 99999999999999999999999999999999999999988777889999889999988888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEeccccccc
Q 015221 201 LFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD 280 (411)
Q Consensus 201 l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~ 280 (411)
++.+++.+.....||.+++|+|++.|++..+++..|++.+++.++|+||+|++.++|.++++...++.||.|+++||+++
T Consensus 240 lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~~Gq~v~ 319 (336)
T PRK14974 240 LMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYD 319 (336)
T ss_pred HHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEeCCCChh
Confidence 99999999988899999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccccCCcchhhhhhcCC
Q 015221 281 EFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 281 ~l~~f~p~~~vs~~~g~ 297 (411)
|+.+|+|..++++++|.
T Consensus 320 Dl~~~~~~~~v~~llg~ 336 (336)
T PRK14974 320 DLIPFDPDWFVDKLLGE 336 (336)
T ss_pred hcccCCHHHHHHHHhCC
Confidence 99999999999999873
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=9.2e-44 Score=349.62 Aligned_cols=285 Identities=32% Similarity=0.543 Sum_probs=251.6
Q ss_pred hHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHH
Q 015221 5 QLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84 (411)
Q Consensus 5 ~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~ 84 (411)
..++++...+.++.+...++++. +++++..|+++||+.+++..+++++++.....+ .++.+.+.+.++++|.
T Consensus 26 ~~~~~~~~~~~~l~~~~~~~~~~----~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~~l~~~l~ 97 (318)
T PRK10416 26 KTRENFGEGINGLFAKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKRKN----LKDPEELKELLKEELA 97 (318)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccC----CCCHHHHHHHHHHHHH
Confidence 33466777778888878889875 478999999999999999999999998765433 3455678899999999
Q ss_pred hhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCC
Q 015221 85 KMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT 164 (411)
Q Consensus 85 ~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~ 164 (411)
+++++...++....+++.+++++|++||||||++.+||.+++..|++|+++++|+||+++.+|+..++.+.+++++....
T Consensus 98 ~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 98 EILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE 177 (318)
T ss_pred HHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC
Confidence 99975444454444567899999999999999999999999999999999999999999999999999999999987777
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc------CCCeeEEEeeCcchhhHHHHHHHHhc
Q 015221 165 ESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAFKQ 238 (411)
Q Consensus 165 ~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvda~~g~~~~~~a~~f~~ 238 (411)
..+|...+.+++..+...+||+|||||||+.+.+..++++++.+...+ .|+.+++|+|++.+++...++..|.+
T Consensus 178 ~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~ 257 (318)
T PRK10416 178 GADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHE 257 (318)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence 778887777888877778999999999999999999999998877643 58899999999999999999999988
Q ss_pred cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC
Q 015221 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 239 ~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~ 297 (411)
..++.++|+||+|++.++|.++++...++.||.|+|+||+++|+++|+|..++++++|.
T Consensus 258 ~~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~~ 316 (318)
T PRK10416 258 AVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLGG 316 (318)
T ss_pred hCCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhCC
Confidence 88899999999999999999999999999999999999999999999999999999874
No 10
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=4.7e-43 Score=338.09 Aligned_cols=264 Identities=32% Similarity=0.562 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 015221 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (411)
Q Consensus 28 i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lv 107 (411)
+++.+++|+..|+++||+.+++.++.+++.+...+.+.. ..+.+.+.++++|.++++....++....+++++|+++
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~ 78 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVK----DAELLKEILKEYLKEILKETDLELIVEENKPNVILFV 78 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCC----CHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEE
Confidence 457789999999999999999999999999876554432 2456788999999999875433444445668999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEE
Q 015221 108 GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (411)
Q Consensus 108 G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~v 187 (411)
|++|+||||++++||.+++++|++|+++++|+||+++.+|++.++++.+++++......||.....+++..+..++||+|
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~V 158 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVV 158 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999988777778888888888888777899999
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHhcC------CCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHH
Q 015221 188 IVDTSGRHKQEAALFEEMRQVSEATN------PDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALS 261 (411)
Q Consensus 188 iIDTaG~~~~~~~l~~el~~i~~~~~------~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~ 261 (411)
||||||+.+.+..++.|+..+..... +|.+++|+|++.+++....+..|.+.+++.++|+||+|++.++|.+++
T Consensus 159 iIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~ 238 (272)
T TIGR00064 159 LIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILS 238 (272)
T ss_pred EEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHH
Confidence 99999999999999999998888776 999999999999999889999998888899999999999999999999
Q ss_pred HHHhcCCCeEEecccccccccccCCcchhhhhhc
Q 015221 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295 (411)
Q Consensus 262 ~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~ 295 (411)
+...++.|+.|+++||+++|+++|+|.+++++++
T Consensus 239 ~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 239 IAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred HHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 9999999999999999999999999999998764
No 11
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=4.1e-41 Score=309.81 Aligned_cols=196 Identities=42% Similarity=0.654 Sum_probs=184.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
|++|++|||+||||||+++|||++++.+|++|+++++|+||.||++||+.+++..++|++......||.+++.++++++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 68999999999999999999999999889999999999999999999999999999999998888899999999999998
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
.+++|+|||||||+.+.+.+.+++++.+.....++++++|++++.+++..+.+..|.+..++.++|+||+|++.+.|.++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 88999999999999999999999999999988999999999999999988899999888889999999999999999999
Q ss_pred HHHHhcCCCeEEecccccccccccCCcchhhhhhcC
Q 015221 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g 296 (411)
++...++.||.|+++||+++|+++|+|.+++++++|
T Consensus 161 ~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~llg 196 (196)
T PF00448_consen 161 SLAYESGLPISYITTGQRVDDLEPASPERLASRLLG 196 (196)
T ss_dssp HHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHHT
T ss_pred eHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 12
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-39 Score=316.58 Aligned_cols=287 Identities=24% Similarity=0.490 Sum_probs=259.1
Q ss_pred HHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhc
Q 015221 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (411)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll 87 (411)
+..-..|++|-|...|+|++++++++.+++.|+.-.|..+.+..+++.+...+.+..+....+....+...+.+.|+++|
T Consensus 278 g~aFg~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQIL 357 (587)
T KOG0781|consen 278 GGAFGLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQIL 357 (587)
T ss_pred hhHHHHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHc
Confidence 34556788999999999999999999999999999999999999999999999888876666677888899999999999
Q ss_pred CCCCCC-------CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc-----
Q 015221 88 DPGKPS-------FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA----- 155 (411)
Q Consensus 88 ~~~~~~-------~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~----- 155 (411)
.|...- -..+.++|.+|.|||-.||||||.++++|+||.+.+.+|+|++|||||.||++||+.+.++.
T Consensus 358 TP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~ 437 (587)
T KOG0781|consen 358 TPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHG 437 (587)
T ss_pred CCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhcc
Confidence 764331 01235689999999999999999999999999999999999999999999999999999987
Q ss_pred -CcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHH
Q 015221 156 -KIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ 234 (411)
Q Consensus 156 -~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~ 234 (411)
-|++|..+.+.|+..++++++++++.++||+|+||||||.+.+..+|..+..+.....||.+++|-.|-.|.++++++.
T Consensus 438 ~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~ 517 (587)
T KOG0781|consen 438 TMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLK 517 (587)
T ss_pred chhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccC-------CceEEEEeCCCC-CCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhh
Q 015221 235 AFKQSV-------SVGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294 (411)
Q Consensus 235 ~f~~~~-------~~~~vIlnK~D~-~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~ 294 (411)
.|++.+ .++++|+||+|. +.+.|+++++.+.+|.||.|+|.|+...||........++.+
T Consensus 518 ~fn~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~l 585 (587)
T KOG0781|consen 518 KFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATL 585 (587)
T ss_pred HHHHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHh
Confidence 888654 268999999998 557899999999999999999999999999877766665544
No 13
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4e-35 Score=290.08 Aligned_cols=258 Identities=19% Similarity=0.341 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEE
Q 015221 27 VLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMF 106 (411)
Q Consensus 27 ~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~l 106 (411)
.....++.+++.|++.||+.+++..+.+.+....... ...++ +.+.+.+.+.+...+.... .. ..++++|+|
T Consensus 175 ~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~---~~~~~-~~~~~~l~~~l~~~l~~~~---~~-~~~~~vI~L 246 (436)
T PRK11889 175 SVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENA---TMITE-EEVIEYILEDMRSHFNTEN---VF-EKEVQTIAL 246 (436)
T ss_pred ccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhccc---ccCCH-HHHHHHHHHHHHHHhcccc---cc-ccCCcEEEE
Confidence 3455678899999999999999999999887643221 12233 4456777787777776421 11 234688999
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc-CCCC
Q 015221 107 VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENCD 185 (411)
Q Consensus 107 vG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~-~~~d 185 (411)
+|++||||||++++||.++..+|++|+++++|+||+++++||+.++...++|++... ++..+ .+++..+.. .++|
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~---d~~~L-~~aL~~lk~~~~~D 322 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR---DEAAM-TRALTYFKEEARVD 322 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC---CHHHH-HHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999999987643 34443 366766654 4799
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHH
Q 015221 186 LIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVA 264 (411)
Q Consensus 186 ~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~ 264 (411)
+|||||||+.+.+...+.++.++.....|+.++||+|++.+ ++..+++..|+. ++++++|+||+|++.++|.++++..
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~-~~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC-CCCCEEEEEcccCCCCccHHHHHHH
Confidence 99999999999888999999888888889999999999765 566788899976 7899999999999999999999999
Q ss_pred hcCCCeEEecccccc-cccccCCcchhhhhhcCC
Q 015221 265 ATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 265 ~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~ 297 (411)
.+++||.|+++||++ +|+...++..+++.++|.
T Consensus 402 ~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg~ 435 (436)
T PRK11889 402 VSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 435 (436)
T ss_pred HHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 999999999999999 689999999999988875
No 14
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.9e-34 Score=289.41 Aligned_cols=258 Identities=22% Similarity=0.302 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 015221 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (411)
Q Consensus 30 ~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~ 109 (411)
+.++++.+.|+++||+.+++.++++++++.....+. .....+.+.+.+.+.+.+... .+. .....+.+|+++|+
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~----~~~~~v~~~l~~~l~~~i~~~-~~~-~~~~~~~vi~lvGp 182 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCS-GSI-IDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhc----CCHHHHHHHHHHHHHHHhhcc-Ccc-ccCCCCeEEEEECC
Confidence 457889999999999999999999998876543322 123445566667676666432 122 22245789999999
Q ss_pred CCCcHHHHHHHHHHHHHH----cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCC
Q 015221 110 QGSGKTTTCTKYAYYHQK----KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (411)
Q Consensus 110 ~GvGKTTl~~kLa~~l~~----~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d 185 (411)
+||||||++++||.++.. +|++|++|++|+||+++.+||+.+++..++|+..... +.+ ...++..+ .++|
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~~~-l~~~L~~~--~~~D 256 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---FKD-LKEEITQS--KDFD 256 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---HHH-HHHHHHHh--CCCC
Confidence 999999999999999873 5799999999999999999999999999999865432 222 23344443 5799
Q ss_pred EEEEeCCCCCcchHHHHHHHHHHHHhcC-CCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCChhhHHHHH
Q 015221 186 LIIVDTSGRHKQEAALFEEMRQVSEATN-PDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV 263 (411)
Q Consensus 186 ~viIDTaG~~~~~~~l~~el~~i~~~~~-~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~ 263 (411)
+|||||||+.+.+...+.++..+..... +..+++|+|+++++.... ....|. .+++.++|+||+|++.++|.++++.
T Consensus 257 lVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 257 LVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-PFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred EEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-CCCCCEEEEEeccCCCcchHHHHHH
Confidence 9999999999877666778877776665 448999999998865544 344443 3678999999999999999999999
Q ss_pred HhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHH
Q 015221 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWS 301 (411)
Q Consensus 264 ~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~ 301 (411)
..++.|+.|+++||++ +|+.+|+|..+++.++|+. +.
T Consensus 336 ~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~-~~ 373 (388)
T PRK12723 336 YEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYR-IS 373 (388)
T ss_pred HHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCC-cc
Confidence 9999999999999999 7999999999999999987 53
No 15
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=8.8e-35 Score=286.99 Aligned_cols=254 Identities=21% Similarity=0.337 Sum_probs=209.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 015221 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (411)
Q Consensus 33 ~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~Gv 112 (411)
+|+.+.|.+.||+.+++.++.+.+.+...... ..+. +.+...+.+.|...+.... .+. ..++.+++++|++||
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~---~~~~-~~v~~~~~~~L~~~l~~~~-~~~--~~~~~ii~lvGptGv 217 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVE---TAHL-DDITDWFVPYLSGKLAVED-SFD--LSNHRIISLIGQTGV 217 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cccH-HHHHHHHHHHhcCcEeeCC-Cce--ecCCeEEEEECCCCC
Confidence 48999999999999999999998876532211 1122 4455667777776665322 222 234688999999999
Q ss_pred cHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc-CCCCEEEEeC
Q 015221 113 GKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-ENCDLIIVDT 191 (411)
Q Consensus 113 GKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~-~~~d~viIDT 191 (411)
||||++++||.++..+|++|++|++|+||+||.+||+.++...++|++.. .+|.++ .+++..+.. .++|+|||||
T Consensus 218 GKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 218 GKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCCEEEEEC
Confidence 99999999999998899999999999999999999999999999998753 345554 566676653 5799999999
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCe
Q 015221 192 SGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (411)
Q Consensus 192 aG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi 270 (411)
||+.+.+...+.++..+.....|+.+++|++++.. ++..+.+..|. .++++++|+||+|++.++|+++++...+|.||
T Consensus 294 AGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~-~l~i~glI~TKLDET~~~G~~Lsv~~~tglPI 372 (407)
T PRK12726 294 VGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLA-EIPIDGFIITKMDETTRIGDLYTVMQETNLPV 372 (407)
T ss_pred CCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcC-cCCCCEEEEEcccCCCCccHHHHHHHHHCCCE
Confidence 99999999999999998888899999999998654 45555555554 57889999999999999999999999999999
Q ss_pred EEeccccccc-ccccCCcchhhhhhcCCC
Q 015221 271 IFIGTGEHMD-EFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 271 ~fi~~Ge~i~-~l~~f~p~~~vs~~~g~G 298 (411)
.|+++||+++ |+..+.+..++.+++|.+
T Consensus 373 sylt~GQ~VpdDi~~a~~~~Lv~~ll~~~ 401 (407)
T PRK12726 373 LYMTDGQNITENIFRPKSRWLAERFVGTD 401 (407)
T ss_pred EEEecCCCCCcccCCCCHHHHHHHHhccc
Confidence 9999999995 688999999999999976
No 16
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=4e-34 Score=286.50 Aligned_cols=264 Identities=21% Similarity=0.278 Sum_probs=211.8
Q ss_pred CcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCC-CC
Q 015221 21 TIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPK-KG 99 (411)
Q Consensus 21 ~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~-~~ 99 (411)
..|++++..+.+++++..|+++||+.+++.++++.+.+.....+.. ....+...+.+.|.+.+......+... ..
T Consensus 146 ~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~----~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~ 221 (432)
T PRK12724 146 TTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQG----RNHNVTERAVTYLEERVSVDSDLFSGTGKN 221 (432)
T ss_pred ccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhcccccc----chHHHHHHHHHHHHHhcccchhhhhhcccC
Confidence 3469999999999999999999999999999999988765433321 124466778888888775432211111 13
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH-HHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l-~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
++.+++++|++||||||++.+||.++ ...|++|+++++|+||+++.+|++.++...++|++... + .......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~---~----~~~l~~~ 294 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---D----IKKFKET 294 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH---H----HHHHHHH
Confidence 46789999999999999999999866 56799999999999999999999999999999875421 1 2233344
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc---CCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT---NPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~---~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
+...++|+|||||||+.+.+...+.++..+.... .+..+++|+|++.+++....+..+.+.++++++|+||+|++.+
T Consensus 295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADF 374 (432)
T ss_pred HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCC
Confidence 4456899999999999988888888888877664 3568999999999986655544444778999999999999999
Q ss_pred hhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhc
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLL 295 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~ 295 (411)
+|.++++...+++||.|+++||++ +|+.++.+..++..++
T Consensus 375 ~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 375 LGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred ccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 999999999999999999999999 6899888887766554
No 17
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=3.2e-34 Score=305.11 Aligned_cols=252 Identities=23% Similarity=0.321 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcC
Q 015221 30 ECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGL 109 (411)
Q Consensus 30 ~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~ 109 (411)
+...++++.|+++||+.+++.+|++++.+. .++ ..+.+.++++|.+.+..... ....-.++.+|+|+|+
T Consensus 125 ~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~---------~~~-~~~~~~l~~~L~~~l~il~~-~~~~~~~g~Vi~lVGp 193 (767)
T PRK14723 125 PLRASLFRWLLGAGFSGQLARALLERLPVG---------YDR-PAAMAWIRNELATHLPVLRD-EDALLAQGGVLALVGP 193 (767)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhc---------CCH-HHHHHHHHHHHHHHhhhccC-CCcccCCCeEEEEECC
Confidence 344779999999999999999999987553 223 33568888888886642111 1111123579999999
Q ss_pred CCCcHHHHHHHHHHHHH-HcC-CCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEE
Q 015221 110 QGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLI 187 (411)
Q Consensus 110 ~GvGKTTl~~kLa~~l~-~~g-~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~v 187 (411)
+|||||||+++||.++. .+| ++|+++++|+||+|+.+|++.+++..++|++... +|.+ +.+++..+. ++|+|
T Consensus 194 nGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~~~--~~D~V 267 (767)
T PRK14723 194 TGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAALG--DKHLV 267 (767)
T ss_pred CCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHHhc--CCCEE
Confidence 99999999999999885 556 6999999999999999999999999999987544 4544 456666553 78999
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH-HHHHHHhcc--CCceEEEEeCCCCCCChhhHHHHHH
Q 015221 188 IVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVA 264 (411)
Q Consensus 188 iIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~-~~a~~f~~~--~~~~~vIlnK~D~~~~~g~~l~~~~ 264 (411)
||||||+.+.+..+++++..+.....|+++++|+|++.+.+.. +.+..|... .+++++|+||+|++.++|.++++..
T Consensus 268 LIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 268 LIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred EEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 9999999999989999998888888899999999999875554 467888764 3689999999999999999999999
Q ss_pred hcCCCeEEecccccc-cccccCCcchhhhhhcCCC
Q 015221 265 ATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 265 ~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~G 298 (411)
.+++||.|+++||+| +|+++|+|..++.++++.+
T Consensus 348 ~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~ 382 (767)
T PRK14723 348 RHRLPVHYVSTGQKVPEHLELAQADELVDRAFATP 382 (767)
T ss_pred HHCCCeEEEecCCCChhhcccCCHHHHHHHHhccc
Confidence 999999999999999 8999999999999999854
No 18
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.3e-32 Score=281.64 Aligned_cols=274 Identities=21% Similarity=0.308 Sum_probs=207.9
Q ss_pred hhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHH
Q 015221 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (411)
Q Consensus 4 ~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L 83 (411)
+++.+.|...+.++..... ..-.+...+++..|+++||+.+++.++++++.+....+ .....+.+.+
T Consensus 173 ~~lr~~l~~~~~~l~~~~~---~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~~----------~~~~~l~~~l 239 (484)
T PRK06995 173 RSLRGMLEEQLASLAWGER---QRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDAE----------AALDWVQSAL 239 (484)
T ss_pred HHHHHHHHHHHHHHhcccc---ccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhchh----------HHHHHHHHHH
Confidence 4556666666666652111 11245568999999999999999999999987754322 2234455555
Q ss_pred HhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CCceEeccCcCcchHHHHHHHhhhhcCcceec
Q 015221 84 CKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQ-KKG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (411)
Q Consensus 84 ~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g-~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~ 161 (411)
.+.+..-... .....++.+++|+|++|||||||+++||.++. ++| ++|++|++|+||.++++||+.|++..+++++.
T Consensus 240 ~~~l~~~~~~-~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~ 318 (484)
T PRK06995 240 AKNLPVLDSE-DALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA 318 (484)
T ss_pred HHHHhhccCc-cccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec
Confidence 5544321111 11112357999999999999999999999885 455 58999999999999999999999999998876
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH-HHHHhccC
Q 015221 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSV 240 (411)
Q Consensus 162 ~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~-a~~f~~~~ 240 (411)
.....+... ......++++++|||+|+.+.+..++..+..+.....+...++|+|++.+...... +..| ...
T Consensus 319 ~~~~~Dl~~------aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f-~~~ 391 (484)
T PRK06995 319 VKDAADLRL------ALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY-RGP 391 (484)
T ss_pred cCCchhHHH------HHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh-ccC
Confidence 444433221 22334578999999999998877666666555555557789999999987666554 4455 456
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCC
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~G 298 (411)
+++++|+||+|++.++|.++++...+++||.|+++||++ +||++|++..++.++++.+
T Consensus 392 ~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~~~ 450 (484)
T PRK06995 392 GLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFCAP 450 (484)
T ss_pred CCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhcCc
Confidence 789999999999999999999999999999999999999 8999999999999999876
No 19
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=1.8e-32 Score=279.36 Aligned_cols=256 Identities=24% Similarity=0.371 Sum_probs=209.8
Q ss_pred HHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 015221 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (411)
Q Consensus 25 e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI 104 (411)
.....+.+++++..|+++||+.+++.++.+.+.+....... .+.+.+.+.|.+.+....... .. ...++
T Consensus 156 ~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~~~-~~--~~~~i 224 (424)
T PRK05703 156 VERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVEDI-LK--QGGVV 224 (424)
T ss_pred cccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccccc-cc--CCcEE
Confidence 34567788999999999999999999999998776433221 356788888998887544333 22 24689
Q ss_pred EEEcCCCCcHHHHHHHHHHHHH--HcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 105 MFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 105 ~lvG~~GvGKTTl~~kLa~~l~--~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
+|+|++||||||++.+||.++. +.|++|++|++|+||.++.+|++.++...++|++......+. ...+..+ .
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l----~~~l~~~--~ 298 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKEL----AKALEQL--R 298 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhH----HHHHHHh--C
Confidence 9999999999999999999987 457999999999999999999999999999998765443222 2233333 3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHH-hcCCCeeEEEeeCcchhhHHHH-HHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~-~~~~d~vllVvda~~g~~~~~~-a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
++|+|||||||+.+.+...+.++..+.. ...+..+++|++++.+...... ...|. .+++.++|+||+|++..+|.++
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-~~~~~~vI~TKlDet~~~G~i~ 377 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-RLPLDGLIFTKLDETSSLGSIL 377 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEecccccccccHHH
Confidence 7999999999999988888888887776 4467789999999888655554 45554 5678899999999999999999
Q ss_pred HHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCC
Q 015221 261 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~G 298 (411)
++...+++|+.|+++||++ +|++++++..++++++|..
T Consensus 378 ~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~~ 416 (424)
T PRK05703 378 SLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGGF 416 (424)
T ss_pred HHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhccc
Confidence 9999999999999999998 8999999999999998754
No 20
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=6.5e-32 Score=259.25 Aligned_cols=259 Identities=19% Similarity=0.360 Sum_probs=208.9
Q ss_pred HHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEE
Q 015221 25 EKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVI 104 (411)
Q Consensus 25 e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI 104 (411)
.+.+.+.++++++.|+++||+.+++.++.+..... .+.... ....+.+.+.+.+...+++.. ...+++.++
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~--f~~~~~---~~~~vl~~v~~~l~~~~~~~~----~~~~~~~~i 78 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVK--FENATM---ITEEVIEYILEDMSSHFNTEN----VFEKEVQTI 78 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEE--ecCCCc---cccHHHHHHhcccEEeeCCcc----cccCCCCEE
Confidence 45677788999999999999999999997744221 111110 112333444444444443221 112355789
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc-CC
Q 015221 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK-EN 183 (411)
Q Consensus 105 ~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~-~~ 183 (411)
+++|++|+||||++..|+.++..+|++++++++|++|.++++|++.++...+++++.. .++..+ .++++.+.. .+
T Consensus 79 ~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l-~~~l~~l~~~~~ 154 (270)
T PRK06731 79 ALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALTYFKEEAR 154 (270)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHH-HHHHHHHHhcCC
Confidence 9999999999999999999998889999999999999999999999999999987653 234333 456666643 47
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc-hhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSA 262 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~ 262 (411)
+|++||||||+.+.+...+.++..+....+|+.+++|+|++. +++..++++.|+. +++.++|+||+|++.++|.++++
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~~~~~~I~TKlDet~~~G~~l~~ 233 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKI 233 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-CCCCEEEEEeecCCCCccHHHHH
Confidence 999999999999988999999998888889999999999975 5678889999976 78999999999999999999999
Q ss_pred HHhcCCCeEEecccccc-cccccCCcchhhhhhcCC
Q 015221 263 VAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 263 ~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~ 297 (411)
...++.||.|+++||++ +|+..+++..++..++|.
T Consensus 234 ~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~~ 269 (270)
T PRK06731 234 PAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQT 269 (270)
T ss_pred HHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhcC
Confidence 99999999999999999 589999999999988875
No 21
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.98 E-value=3e-31 Score=262.41 Aligned_cols=191 Identities=30% Similarity=0.470 Sum_probs=167.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH--HcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~--~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
.++|++|||+|||||||++|||+.+. ...++|++|+.|+||.||.+||+.++...++|+..+.+..+ ...++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~e----l~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKE----LAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHH----HHHHHHH
Confidence 57899999999999999999999998 55789999999999999999999999999999987665332 2334444
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-hHHHHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
+. .||+|||||+|+.+.|....++++.+.....+..+++|+++++.. +..+....|. .+++.++|+||+|++...|
T Consensus 279 l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~-~~~i~~~I~TKlDET~s~G 355 (407)
T COG1419 279 LR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS-LFPIDGLIFTKLDETTSLG 355 (407)
T ss_pred hh--cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc-cCCcceeEEEcccccCchh
Confidence 43 689999999999999999999999998888888899999998764 4445666775 4688999999999999999
Q ss_pred hHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCC
Q 015221 258 GALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~G 298 (411)
...++...+++||.|+++||+| +|+....|..++++++|.-
T Consensus 356 ~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 356 NLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred HHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccc
Confidence 9999999999999999999999 6899999999999998854
No 22
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.98 E-value=1.4e-30 Score=259.50 Aligned_cols=252 Identities=21% Similarity=0.300 Sum_probs=194.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 015221 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (411)
Q Consensus 33 ~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~Gv 112 (411)
..+.+.|+++|++..++..+.+.+.+..... ++ +.....+.+.+...+...... ...-.+..+++|+||+||
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~------~~-~~~~~~~~~~l~~~l~~~~~~-~~~~~~g~ii~lvGptGv 148 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEGYD------TL-DAAADWAQSVLAANLPVLDSE-DALMERGGVFALMGPTGV 148 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhcccC------CH-HHHHHHHHHHHHhcchhhcCC-CccccCCcEEEEECCCCC
Confidence 6788999999999999999999875521111 11 122333444444433221111 111123468999999999
Q ss_pred cHHHHHHHHHHHHHH-cC-CCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q 015221 113 GKTTTCTKYAYYHQK-KG-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVD 190 (411)
Q Consensus 113 GKTTl~~kLa~~l~~-~g-~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viID 190 (411)
|||||+.+||.++.. .| ++|+++++|+||+++.+||+.+++..++|+....+..+... .+.. ..++|+||||
T Consensus 149 GKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~----~l~~--l~~~DlVLID 222 (374)
T PRK14722 149 GKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL----ALAE--LRNKHMVLID 222 (374)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH----HHHH--hcCCCEEEEc
Confidence 999999999998764 46 69999999999999999999999999999887666555422 2333 3478999999
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccC--------CceEEEEeCCCCCCChhhHHH
Q 015221 191 TSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSV--------SVGAVIVTKMDGHAKGGGALS 261 (411)
Q Consensus 191 TaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~--------~~~~vIlnK~D~~~~~g~~l~ 261 (411)
|||+.+.+..+.+++..+.....+..+++|++++.+.+... .+..|.... ++.++|+||+|++.+.|.+++
T Consensus 223 TaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~ 302 (374)
T PRK14722 223 TIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLD 302 (374)
T ss_pred CCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHH
Confidence 99999888888888877766667788999999998876654 567776542 478999999999999999999
Q ss_pred HHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCC
Q 015221 262 AVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 262 ~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~G 298 (411)
+...+++||.|+++||++ +|+....+..++.+.++.+
T Consensus 303 ~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~~~~ 340 (374)
T PRK14722 303 TVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAFCAP 340 (374)
T ss_pred HHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHhccc
Confidence 999999999999999999 5799999998888877643
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.98 E-value=3.1e-30 Score=260.66 Aligned_cols=248 Identities=19% Similarity=0.257 Sum_probs=195.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCC
Q 015221 32 LNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQG 111 (411)
Q Consensus 32 l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~G 111 (411)
...+++.|+++||+.+++..+++.+.+....+. ..+++...+.+.|... +.. . .. ..+.+++|+|++|
T Consensus 134 ~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~------~~~~~~~~l~~~l~~~-~~~--~-~~--~~g~vi~lvGpnG 201 (420)
T PRK14721 134 GMKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQ------SLKKTISLLTLNLRTI-GGD--E-II--EQGGVYALIGPTG 201 (420)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHhc-CCc--c-cc--CCCcEEEEECCCC
Confidence 377899999999999999999998876543221 1123334443333322 111 1 11 2357899999999
Q ss_pred CcHHHHHHHHHHHHHH-c-CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEE
Q 015221 112 SGKTTTCTKYAYYHQK-K-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIV 189 (411)
Q Consensus 112 vGKTTl~~kLa~~l~~-~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viI 189 (411)
||||||+++||.++.. . +.++.++.+|+||.++.+|+..+++..++|++......+. ..++.. ..++|+++|
T Consensus 202 ~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl----~~al~~--l~~~d~VLI 275 (420)
T PRK14721 202 VGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL----QLMLHE--LRGKHMVLI 275 (420)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH----HHHHHH--hcCCCEEEe
Confidence 9999999999987643 3 4789999999999999999999999999998765443332 222333 357999999
Q ss_pred eCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCC
Q 015221 190 DTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKS 268 (411)
Q Consensus 190 DTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~ 268 (411)
||+|+.+.+..+++++..+.....++.+++|++++.+..... .+..| ..+++.++|+||+|++.++|.++++...+++
T Consensus 276 DTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f-~~~~~~~~I~TKlDEt~~~G~~l~~~~~~~l 354 (420)
T PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY-QGHGIHGCIITKVDEAASLGIALDAVIRRKL 354 (420)
T ss_pred cCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh-cCCCCCEEEEEeeeCCCCccHHHHHHHHhCC
Confidence 999999988888888888766667889999999997755555 45555 4578999999999999999999999999999
Q ss_pred CeEEecccccc-cccccCCcchhhhhhcCCC
Q 015221 269 PVIFIGTGEHM-DEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 269 Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~G 298 (411)
|+.|+++|+++ +|++++++..++.++++.+
T Consensus 355 Pi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~~~ 385 (420)
T PRK14721 355 VLHYVTNGQKVPEDLHEANSRYLLHRIFKPS 385 (420)
T ss_pred CEEEEECCCCchhhhhhCCHHHHHHHHhcCc
Confidence 99999999999 7999999999999999865
No 24
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=1.5e-27 Score=244.27 Aligned_cols=246 Identities=22% Similarity=0.291 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC
Q 015221 31 CLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ 110 (411)
Q Consensus 31 ~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~ 110 (411)
.-..+.+.|++.||+.+++.++.+.+...... ......+.+.|.+.+.-..... .. ...+|+|+|++
T Consensus 293 ~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~----------~~~~~~l~~~L~~~l~v~~~~~-l~--~G~vIaLVGPt 359 (559)
T PRK12727 293 VRAQALELMDDYGFDAGLTRDVAMQIPADTEL----------HRGRGLMLGLLSKRLPVAPVDP-LE--RGGVIALVGPT 359 (559)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhcccch----------hhHHHHHHHHHHHhcCcCcccc-cc--CCCEEEEECCC
Confidence 34567799999999999999999887553211 1224566677777764322221 12 34789999999
Q ss_pred CCcHHHHHHHHHHHHHHc--CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEE
Q 015221 111 GSGKTTTCTKYAYYHQKK--GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLII 188 (411)
Q Consensus 111 GvGKTTl~~kLa~~l~~~--g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~vi 188 (411)
|+||||++.+|+.++..+ |++|.++++|+||.++.+|++.++...++++...... . .....+..+ .+||+||
T Consensus 360 GvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~---~-~L~~aL~~l--~~~DLVL 433 (559)
T PRK12727 360 GAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSA---E-SLLDLLERL--RDYKLVL 433 (559)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcH---H-HHHHHHHHh--ccCCEEE
Confidence 999999999999988765 5799999999999999999999999999887653321 1 223334433 4799999
Q ss_pred EeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcC
Q 015221 189 VDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATK 267 (411)
Q Consensus 189 IDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g 267 (411)
|||||+.+.+..++.++..+... .....++|++++.+ .+..+.++.|.. .++.++|+||+|++.+.|.++++...++
T Consensus 434 IDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~f~~-~~~~gvILTKlDEt~~lG~aLsv~~~~~ 511 (559)
T PRK12727 434 IDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRRFAH-AKPQGVVLTKLDETGRFGSALSVVVDHQ 511 (559)
T ss_pred ecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHHHHh-hCCeEEEEecCcCccchhHHHHHHHHhC
Confidence 99999998887777777665543 34568899998765 444556677765 4678999999999999999999999999
Q ss_pred CCeEEecccccc-cccccCCcchhhhhhcCC
Q 015221 268 SPVIFIGTGEHM-DEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 268 ~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~ 297 (411)
+||.|+++||++ +||+++++..+++++...
T Consensus 512 LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l 542 (559)
T PRK12727 512 MPITWVTDGQRVPDDLHRANAASLVLRLEDL 542 (559)
T ss_pred CCEEEEeCCCCchhhhhcCCHHHHHHHHHHH
Confidence 999999999999 799999999888876543
No 25
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.94 E-value=8.2e-26 Score=203.83 Aligned_cols=173 Identities=45% Similarity=0.719 Sum_probs=154.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
++++++|+||+||||++.+++..+++.|++|+++++|++|++..+++..++.+.+++++......++.++..+.+.....
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999999999999999999999999999988766667888887777777777
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHH
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALS 261 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~ 261 (411)
.++|++||||||....+...+.++..+.....++.+++|+|+..+.+..+.+..+.+..++.++|+||+|...+.|.+++
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~~~~~~~viltk~D~~~~~g~~~~ 160 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARGGAALS 160 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHhhCCCCEEEEECCcCCCCcchhhh
Confidence 89999999999998777778888877777777999999999988877778888887666789999999999999999999
Q ss_pred HHHhcCCCeEEec
Q 015221 262 AVAATKSPVIFIG 274 (411)
Q Consensus 262 ~~~~~g~Pi~fi~ 274 (411)
+...++.|+.|+|
T Consensus 161 ~~~~~~~p~~~~~ 173 (173)
T cd03115 161 IRAVTGKPIKFIG 173 (173)
T ss_pred hHHHHCcCeEeeC
Confidence 9999999999985
No 26
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=5.4e-21 Score=182.10 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=145.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|+||||||||+|+|. |.|+++|+. ++++||..+.- ..+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~------G~KisIvS~-----------k~QTTR~~I~G--I~t~-------------- 51 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALV------GQKISIVSP-----------KPQTTRNRIRG--IVTT-------------- 51 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHh------cCceEeecC-----------CcchhhhheeE--EEEc--------------
Confidence 45789999999999999999999 999999999 88888887752 2221
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHH--hcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~--~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
+++++|+|||||.+.....+...|.+... ...+|.++||+|+..+. ....+...++..-.+..+++||+|....
T Consensus 52 --~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 52 --DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred --CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 36899999999999887777777654433 33789999999998753 3333455555522356889999998665
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC-------CCchHHHHhhhcCcc
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM-------DQQPELLQKLSEGNF 328 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~-------~~~~~~~~~~~~~~f 328 (411)
.-..+... +......+|....++|++.|.| ++.|++.+.+++++ +...+..+++...|+
T Consensus 130 ~~~l~~~~-------------~~~~~~~~f~~ivpiSA~~g~n-~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEi 195 (298)
T COG1159 130 KTVLLKLI-------------AFLKKLLPFKEIVPISALKGDN-VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEI 195 (298)
T ss_pred HHHHHHHH-------------HHHHhhCCcceEEEeeccccCC-HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHH
Confidence 43223332 2233455678889999999999 99999999999854 456678889998999
Q ss_pred cHHHHHHHHHH
Q 015221 329 TLRIMYEQFQN 339 (411)
Q Consensus 329 ~~~d~~~ql~~ 339 (411)
++|.++..+++
T Consensus 196 iREk~~~~l~e 206 (298)
T COG1159 196 IREKLLLLLRE 206 (298)
T ss_pred HHHHHHHhccc
Confidence 99988887765
No 27
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1e-20 Score=189.81 Aligned_cols=197 Identities=21% Similarity=0.261 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhh
Q 015221 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (411)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~l 86 (411)
-.+.+.+++++.| .++..+++|++.|++.-..+++..||.++..+......+ ..-.+.+.++|.++
T Consensus 139 e~a~r~A~~~l~G-------~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i-------~~~l~~~~~~l~~l 204 (454)
T COG0486 139 EQAARIALRQLQG-------ALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKI-------REKLEELIAELDEL 204 (454)
T ss_pred HHHHHHHHHHcCC-------cHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHH-------HHHHHHHHHHHHHH
Confidence 3567889999999 899999999999999999999999998872222222222 22246677889999
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+.....+..++.| ..++++|+|||||||++|.|+ +++.+||+. .+.+||.-+..
T Consensus 205 l~~~~~g~ilr~G--~kvvIiG~PNvGKSSLLNaL~------~~d~AIVTd-----------I~GTTRDviee------- 258 (454)
T COG0486 205 LATAKQGKILREG--LKVVIIGRPNVGKSSLLNALL------GRDRAIVTD-----------IAGTTRDVIEE------- 258 (454)
T ss_pred HHhhhhhhhhhcC--ceEEEECCCCCcHHHHHHHHh------cCCceEecC-----------CCCCccceEEE-------
Confidence 9887777666655 559999999999999999999 999999998 44445544432
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHH-H-HHHHHhcCCCeeEEEeeCcchhhHHH--HHHHHhccCCc
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSV 242 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~e-l-~~i~~~~~~d~vllVvda~~g~~~~~--~a~~f~~~~~~ 242 (411)
.+.-+|+.+.|+||||....++..... + +......++|.+++|+|++.+.+..+ ... ......+
T Consensus 259 -----------~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~ 326 (454)
T COG0486 259 -----------DINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP 326 (454)
T ss_pred -----------EEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC
Confidence 223468999999999998776544332 1 23334458999999999987522222 222 2222345
Q ss_pred eEEEEeCCCCCCC
Q 015221 243 GAVIVTKMDGHAK 255 (411)
Q Consensus 243 ~~vIlnK~D~~~~ 255 (411)
..+|+||.|+..+
T Consensus 327 ~i~v~NK~DL~~~ 339 (454)
T COG0486 327 IIVVLNKADLVSK 339 (454)
T ss_pred EEEEEechhcccc
Confidence 7899999999765
No 28
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.81 E-value=1.1e-18 Score=169.65 Aligned_cols=149 Identities=30% Similarity=0.342 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEE
Q 015221 28 LNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFV 107 (411)
Q Consensus 28 i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lv 107 (411)
..+.+.++++.|+++||+.+++.++.+++.+.. +.+.+...+.+.|.+.++........ ..++.+++|+
T Consensus 132 ~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~----------~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vi~~v 200 (282)
T TIGR03499 132 RDPEGAKLLERLLRAGVSPELARELLEKLPERA----------DAEDAWRWLREALEKMLPVKPEEDEI-LEQGGVIALV 200 (282)
T ss_pred cCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC----------CHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEEE
Confidence 455678999999999999999999999887521 22445678889999988632222212 1246799999
Q ss_pred cCCCCcHHHHHHHHHHHHHHc-C-CCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCC
Q 015221 108 GLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (411)
Q Consensus 108 G~~GvGKTTl~~kLa~~l~~~-g-~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d 185 (411)
|++||||||++.+||.++..+ | ++|++|++|+||.++++|+..++...++|++... ++.+ ....+..+ .++|
T Consensus 201 GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~---~~~~-l~~~l~~~--~~~d 274 (282)
T TIGR03499 201 GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVAR---DPKE-LRKALDRL--RDKD 274 (282)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccC---CHHH-HHHHHHHc--cCCC
Confidence 999999999999999999876 5 9999999999999999999999999999986543 3333 24455554 3699
Q ss_pred EEEEeCCC
Q 015221 186 LIIVDTSG 193 (411)
Q Consensus 186 ~viIDTaG 193 (411)
+|||||||
T Consensus 275 ~vliDt~G 282 (282)
T TIGR03499 275 LILIDTAG 282 (282)
T ss_pred EEEEeCCC
Confidence 99999998
No 29
>PF02978 SRP_SPB: Signal peptide binding domain; InterPro: IPR004125 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the M domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 2FFH_B 3NDB_B 2V3C_C 1QZW_G 1QZX_B 3KL4_A 2JQE_A 1HQ1_A 1RY1_W 1MFQ_C ....
Probab=99.80 E-value=7.8e-20 Score=150.75 Aligned_cols=67 Identities=40% Similarity=0.697 Sum_probs=59.5
Q ss_pred cccHHHHHHHHHHHHccCChhHHhhcCCCCCccc---Ccc-ccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSEL---MPK-GREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~---~~~-~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+||++||++|+++++||||+++|++||||+++ . ++. ...+.++++++||++||+|||++||+||..+
T Consensus 1 ~F~l~Df~~Q~~~i~kmG~l~~i~~miPG~~~-~~~~~~~~~~~~~~~~~lk~~~~Ii~SMT~~Er~~p~ll 71 (104)
T PF02978_consen 1 KFTLRDFLEQLQQIKKMGPLSKIMSMIPGMGN-MMESLPSEQEEEEDEKKLKRMEAIIDSMTPEERDNPKLL 71 (104)
T ss_dssp SSCHHHHHHHHHHHHHTSTTHHHHTTSSSSSS-S-SSTTCSSSSHHHHHHHHHHHHHHTTSBHHHHHCGGGH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHCcCccc-cccccchhcchhhhHHHHHHHHHHHHCcCHHHHhCcccc
Confidence 59999999999999999999999999999985 3 333 2245679999999999999999999999987
No 30
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=9.5e-18 Score=168.06 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.+|+++|+|||||||+.|+|+ |++.+||+. .+..||..+. ..+++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D-----------~pGvTRDr~y------------------~~~~~ 48 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSD-----------TPGVTRDRIY------------------GDAEW 48 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeec-----------CCCCccCCcc------------------ceeEE
Confidence 579999999999999999999 999999998 3333333321 23345
Q ss_pred CCCCEEEEeCCCCCcch-HHHHHHHHHHH--HhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 182 ENCDLIIVDTSGRHKQE-AALFEEMRQVS--EATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~-~~l~~el~~i~--~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+..+.+|||+|....+ +.+.+.+++.. ...++|.++||+|+..|.. ....+..+...-.+..+|+||+|....
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~- 127 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA- 127 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh-
Confidence 57889999999998655 55666665433 3448999999999998743 344667776544678999999998622
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.......+.+| |.....+|+.+|.| +.+|++++.+.+
T Consensus 128 e~~~~efyslG-----------------~g~~~~ISA~Hg~G-i~dLld~v~~~l 164 (444)
T COG1160 128 EELAYEFYSLG-----------------FGEPVPISAEHGRG-IGDLLDAVLELL 164 (444)
T ss_pred hhhHHHHHhcC-----------------CCCceEeehhhccC-HHHHHHHHHhhc
Confidence 22233333333 45567899999999 999999999998
No 31
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.75 E-value=6.6e-17 Score=159.65 Aligned_cols=193 Identities=20% Similarity=0.232 Sum_probs=127.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc---hHH--H--HHHHhhhhcCcceeccC---CCCC
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA---GAF--D--QLKQNATKAKIPFYGSY---TESD 167 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~---~a~--~--qL~~~~~~~~v~~~~~~---~~~d 167 (411)
.+++.+|.|+|+|||||||++..|+.++...|++|++++.||..+ |+. + .+...+...++.+.... ....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 346789999999999999999999999999999999999998554 332 2 23333333333222212 1223
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEE
Q 015221 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 247 (411)
Q Consensus 168 ~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIl 247 (411)
......+++..+...+||++||||+|..+..... ...+|.+++|+++..|.+.........+. ...+|+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i---------~~~aD~vlvv~~p~~gd~iq~~k~gi~E~--aDIiVV 201 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETAV---------AGMVDFFLLLQLPGAGDELQGIKKGIMEL--ADLIVI 201 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhHH---------HHhCCEEEEEecCCchHHHHHHHhhhhhh--hheEEe
Confidence 4566777888888889999999999998554331 22469999998866665443322211121 147899
Q ss_pred eCCCCCCChhhHHHH--H-HhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSA--V-AATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~--~-~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|+..+.+..... . .... +.. . ....+ .|..++|+..|.| ++.|++.+.+++
T Consensus 202 NKaDl~~~~~a~~~~~el~~~L~----l~~--~---~~~~w~~pVi~vSA~~g~G-IdeL~~~I~~~~ 259 (332)
T PRK09435 202 NKADGDNKTAARRAAAEYRSALR----LLR--P---KDPGWQPPVLTCSALEGEG-IDEIWQAIEDHR 259 (332)
T ss_pred ehhcccchhHHHHHHHHHHHHHh----ccc--c---cccCCCCCEEEEECCCCCC-HHHHHHHHHHHH
Confidence 999987654322111 1 1111 000 0 00123 4677899999999 999999999986
No 32
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.73 E-value=8.2e-17 Score=153.36 Aligned_cols=194 Identities=21% Similarity=0.276 Sum_probs=132.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc---chHH--HH--HHHhhhhcCcceeccCCCCC-
Q 015221 96 PKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---AGAF--DQ--LKQNATKAKIPFYGSYTESD- 167 (411)
Q Consensus 96 ~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r---~~a~--~q--L~~~~~~~~v~~~~~~~~~d- 167 (411)
+..|++.+|.|+|.||+||||++-+|...|..+|++|++++.||.+ .|++ +. +.......++.+.+..+...
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 3466788999999999999999999999999999999999999854 3442 43 44445566776655544433
Q ss_pred --hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEE
Q 015221 168 --PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (411)
Q Consensus 168 --~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~v 245 (411)
.....++++.-++..|||+|||.|.|..+.+.+.. . -+|.+++|+-+..|.+..-.-....+. -+.+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-------~--~aDt~~~v~~pg~GD~~Q~iK~GimEi--aDi~ 194 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-------N--MADTFLVVMIPGAGDDLQGIKAGIMEI--ADII 194 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-------h--hcceEEEEecCCCCcHHHHHHhhhhhh--hhee
Confidence 33445677777788899999999999988765432 1 248888888887776544333333332 1688
Q ss_pred EEeCCCCCCChhhHHHH---HHhcCCCeEEecccccccccccCCcc-hhhhhhcCCCCHHHHHHHHHhhC
Q 015221 246 IVTKMDGHAKGGGALSA---VAATKSPVIFIGTGEHMDEFEVFDVK-PFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 246 IlnK~D~~~~~g~~l~~---~~~~g~Pi~fi~~Ge~i~~l~~f~p~-~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|+||.|. .|+.... ...... .....+-..|.|. .-.|+..|.| +++|++++.++.
T Consensus 195 vINKaD~---~~A~~a~r~l~~al~~-------~~~~~~~~~W~ppv~~t~A~~g~G-i~~L~~ai~~h~ 253 (323)
T COG1703 195 VINKADR---KGAEKAARELRSALDL-------LREVWRENGWRPPVVTTSALEGEG-IDELWDAIEDHR 253 (323)
T ss_pred eEeccCh---hhHHHHHHHHHHHHHh-------hcccccccCCCCceeEeeeccCCC-HHHHHHHHHHHH
Confidence 9999993 2232221 111110 0112222334544 5589999999 999999999997
No 33
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.70 E-value=1.1e-16 Score=154.82 Aligned_cols=187 Identities=20% Similarity=0.224 Sum_probs=120.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|+|||||||++|+|. |.++.+++. .+.+++..+. +... ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~------~~~~~~vs~-----------~~~TTr~~i~--~i~~----------------~~ 46 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH------GQKISITSP-----------KAQTTRNRIS--GIHT----------------TG 46 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCcEeecCC-----------CCCcccCcEE--EEEE----------------cC
Confidence 58999999999999999999 999988887 4444443221 1111 12
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHH-H-HHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCChhhH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQ-V-SEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~-i-~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~~g~~ 259 (411)
++.++++||||.......+...+.. . .....+|.+++|+|++....... ....+...-.+..+|+||+|...+. ..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~-~~ 125 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKD-KL 125 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHH-HH
Confidence 5678999999986543333333322 1 22347899999999986532212 2223333234568899999986432 11
Q ss_pred HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC-------CchHHHHhhhcCcccHHH
Q 015221 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD-------QQPELLQKLSEGNFTLRI 332 (411)
Q Consensus 260 l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~-------~~~~~~~~~~~~~f~~~d 332 (411)
..... .......|.+..++|+..|.| ++.|++.+.+.+++. ...+..+++...|+.++.
T Consensus 126 ~~~~~-------------~~~~~~~~~~v~~iSA~~g~g-i~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~ 191 (270)
T TIGR00436 126 LPLID-------------KYAILEDFKDIVPISALTGDN-TSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK 191 (270)
T ss_pred HHHHH-------------HHHhhcCCCceEEEecCCCCC-HHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 21111 111223455678899999999 999999999987543 344555666667777777
Q ss_pred HHHHHHH
Q 015221 333 MYEQFQN 339 (411)
Q Consensus 333 ~~~ql~~ 339 (411)
++..+++
T Consensus 192 ~~~~~~~ 198 (270)
T TIGR00436 192 IIRYTKE 198 (270)
T ss_pred HHHhccc
Confidence 7766654
No 34
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1.6e-16 Score=159.32 Aligned_cols=212 Identities=17% Similarity=0.300 Sum_probs=137.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCC-CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc
Q 015221 77 QAIFNELCKMLDPGKPSFTPKK-GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA 155 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~-~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~ 155 (411)
..+.+++.+.+. ......... ..+..|+++|.||+||||++|+|. |...+||+. ...
T Consensus 154 ~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~il------geeR~Iv~~-----------~aG---- 211 (444)
T COG1160 154 GDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAIL------GEERVIVSD-----------IAG---- 211 (444)
T ss_pred HHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhc------cCceEEecC-----------CCC----
Confidence 567788888874 111111112 257889999999999999999999 999999998 333
Q ss_pred CcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH
Q 015221 156 KIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAAF 230 (411)
Q Consensus 156 ~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvda~~g~~~~ 230 (411)
++.|+++. .+..++..|++|||||..... .+.++-.+.+.....++.+++|+|++.|....
T Consensus 212 --------TTRD~I~~------~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~q 277 (444)
T COG1160 212 --------TTRDSIDI------EFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQ 277 (444)
T ss_pred --------ccccceee------eEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHH
Confidence 44444332 233557889999999974321 12333445555556789999999999874333
Q ss_pred --HHHHHHhccCCceEEEEeCCCCCCChhhHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHH
Q 015221 231 --DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKI 307 (411)
Q Consensus 231 --~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i 307 (411)
..+....+......+|+||||+........... .....-.. .-.|.|..++|+++|.| +..|++.+
T Consensus 278 D~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~----------~l~~a~i~~iSA~~~~~-i~~l~~~i 346 (444)
T COG1160 278 DLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP----------FLDFAPIVFISALTGQG-LDKLFEAI 346 (444)
T ss_pred HHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc----------cccCCeEEEEEecCCCC-hHHHHHHH
Confidence 344444444445688999999866532222222 11111111 22488999999999999 99999999
Q ss_pred HhhCCCCCchHHHHhhhcCcccHHHHHHHHHHHHccCC
Q 015221 308 HEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGP 345 (411)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~f~~~d~~~ql~~~~~~g~ 345 (411)
.+..... .-.+.-..+-.-|++..++.|
T Consensus 347 ~~~~~~~----------~~ri~Ts~LN~~l~~a~~~~p 374 (444)
T COG1160 347 KEIYECA----------TRRISTSLLNRVLEDAVAKHP 374 (444)
T ss_pred HHHHHHh----------ccccCHHHHHHHHHHHHHhCC
Confidence 8887322 123455555566666666664
No 35
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=3.9e-16 Score=152.41 Aligned_cols=190 Identities=23% Similarity=0.279 Sum_probs=119.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+..+|+++|+|||||||++|.|. |.++++++..+. +++..+.-.. .
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~-----------tt~~~i~~i~--~--------------- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQ-----------TTRHRIRGIV--T--------------- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHh------CCceeecCCCCC-----------cccccEEEEE--E---------------
Confidence 45789999999999999999999 999999887432 2222221110 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHH--HHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
..+++++++||||.......+...+... .....+|.+++|+|++.+ .........+...-.+..+|+||+|....
T Consensus 50 -~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 50 -EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred -cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 1247899999999876554433333222 223478999999999863 22222333333222357889999998633
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC-------CchHHHHhhhcCcc
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD-------QQPELLQKLSEGNF 328 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~-------~~~~~~~~~~~~~f 328 (411)
........ +.+.+...+.+..++|+..|.| ++.|++.+.+.+++. ...+...++...++
T Consensus 129 ~~~l~~~~-------------~~l~~~~~~~~i~~iSA~~~~g-v~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~Ei 194 (292)
T PRK00089 129 KEELLPLL-------------EELSELMDFAEIVPISALKGDN-VDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEI 194 (292)
T ss_pred HHHHHHHH-------------HHHHhhCCCCeEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 22222222 1122222356677899999999 999999999987543 22334455555566
Q ss_pred cHHHHHHHHH
Q 015221 329 TLRIMYEQFQ 338 (411)
Q Consensus 329 ~~~d~~~ql~ 338 (411)
..+.++.+++
T Consensus 195 iRe~~~~~l~ 204 (292)
T PRK00089 195 IREKLLRLLG 204 (292)
T ss_pred HHHHHHhhCC
Confidence 6666666654
No 36
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.68 E-value=4.6e-17 Score=153.20 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=117.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc---chHH----HHHHHhhhhcCcceeccCCCCChHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---AGAF----DQLKQNATKAKIPFYGSYTESDPVR 170 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r---~~a~----~qL~~~~~~~~v~~~~~~~~~d~~~ 170 (411)
.++..+|.|+|+||+||||++.+|+..+.++|++|++++.||-. .||+ -.+..+....++.+.+..+......
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 34578999999999999999999999999999999999999854 3442 3344555667777666566555444
Q ss_pred H---HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEE
Q 015221 171 I---AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 247 (411)
Q Consensus 171 i---~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIl 247 (411)
+ ..+++.-++..+||+|||.|.|..+.+.+. . .-+|.+++|+-+..|.+..-.-....+. .+.+|+
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I-------~--~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--aDi~vV 174 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI-------A--DMADTVVLVLVPGLGDEIQAIKAGIMEI--ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH-------H--TTSSEEEEEEESSTCCCCCTB-TTHHHH---SEEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH-------H--HhcCeEEEEecCCCccHHHHHhhhhhhh--ccEEEE
Confidence 3 456666777789999999999998765432 2 2459999999988775432111111111 268999
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|. .|+...... ...-+ ..... .-..| .|...+|+..|.| +++|++.+.++.
T Consensus 175 NKaD~---~gA~~~~~~-l~~~l---~l~~~--~~~~W~ppV~~tsA~~~~G-i~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADR---PGADRTVRD-LRSML---HLLRE--REDGWRPPVLKTSALEGEG-IDELWEAIDEHR 229 (266)
T ss_dssp E--SH---HHHHHHHHH-HHHHH---HHCST--SCTSB--EEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred eCCCh---HHHHHHHHH-HHHHH---hhccc--cccCCCCCEEEEEeCCCCC-HHHHHHHHHHHH
Confidence 99993 222211111 00000 00010 11123 3556689999999 999999999986
No 37
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.67 E-value=2.2e-15 Score=147.81 Aligned_cols=196 Identities=19% Similarity=0.192 Sum_probs=121.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-----HH--HHHhhhhcCcceeccCCC---CC
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----DQ--LKQNATKAKIPFYGSYTE---SD 167 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-----~q--L~~~~~~~~v~~~~~~~~---~d 167 (411)
.+++.+|+++|+||+||||++.+|+.++..+|++|++++.|++.+... ++ +.......++.+....+. ..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG 110 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence 345788999999999999999999999999999999999998876421 11 222222233332222221 12
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEE
Q 015221 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 247 (411)
Q Consensus 168 ~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIl 247 (411)
......+.+..+...+||++||||||..+...+. ...+|.++++.++..+.+.......+.+ .+..+|+
T Consensus 111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i---------~~~aD~i~vv~~~~~~~el~~~~~~l~~--~~~ivv~ 179 (300)
T TIGR00750 111 LSQATRELILLLDAAGYDVIIVETVGVGQSEVDI---------ANMADTFVVVTIPGTGDDLQGIKAGLME--IADIYVV 179 (300)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH---------HHhhceEEEEecCCccHHHHHHHHHHhh--hccEEEE
Confidence 2234556666777789999999999987554322 1134777777766655544443333332 2358899
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|.....+....... ....+..+ .++ ...+ .|..++|+..|.| ++.|++.+.++.
T Consensus 180 NK~Dl~~~~~~~~~~~~-~~~~l~~l--~~~---~~~~~~~v~~iSA~~g~G-i~~L~~~i~~~~ 237 (300)
T TIGR00750 180 NKADGEGATNVTIARLM-LALALEEI--RRR---EDGWRPPVLTTSAVEGRG-IDELWDAIEEHK 237 (300)
T ss_pred EcccccchhHHHHHHHH-HHHHHhhc--ccc---ccCCCCCEEEEEccCCCC-HHHHHHHHHHHH
Confidence 99998654321110000 00000000 011 1112 2467799999999 999999998874
No 38
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=6.5e-16 Score=159.48 Aligned_cols=231 Identities=17% Similarity=0.186 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhh
Q 015221 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (411)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~l 86 (411)
..+.+.++++|+| .++..++.||..|++.-..+++..+|.++.......+.+ ..-+..+..+|.++
T Consensus 137 ~~~~~~al~~l~G-------~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i-------~~~i~~l~~~l~~l 202 (449)
T PRK05291 137 EAAARLALRQLQG-------ALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKI-------LEKLEELIAELEAL 202 (449)
T ss_pred HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHH-------HHHHHHHHHHHHHH
Confidence 4578899999999 889999999999999988888888887653221111111 12245667777777
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+........... ...|+++|.|||||||++|+|. |.++++++.- + .+++.-+..
T Consensus 203 ~~~~~~~~~~~~--~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~---~--------gtT~d~~~~------- 256 (449)
T PRK05291 203 LASARQGEILRE--GLKVVIAGRPNVGKSSLLNALL------GEERAIVTDI---A--------GTTRDVIEE------- 256 (449)
T ss_pred HHHHHHHHHhhc--CCEEEEECCCCCCHHHHHHHHh------CCCCcccCCC---C--------CcccccEEE-------
Confidence 765433322222 3569999999999999999999 8777766651 1 111111100
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHH-H-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHh-ccCCce
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFK-QSVSVG 243 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~e-l-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~-~~~~~~ 243 (411)
.+..+++.+.++||||........... + +.......+|.+++|+|++.+....+ ...+. ....+.
T Consensus 257 -----------~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~-~~~l~~~~~~pi 324 (449)
T PRK05291 257 -----------HINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEED-DEILEELKDKPV 324 (449)
T ss_pred -----------EEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhH-HHHHHhcCCCCc
Confidence 011236788999999986433222111 1 12233447899999999976532211 11111 112356
Q ss_pred EEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 244 ~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.+|+||+|....... . . ....+...+|++.|.| ++.|++++.+.+.
T Consensus 325 iiV~NK~DL~~~~~~--~--~------------------~~~~~~i~iSAktg~G-I~~L~~~L~~~l~ 370 (449)
T PRK05291 325 IVVLNKADLTGEIDL--E--E------------------ENGKPVIRISAKTGEG-IDELREAIKELAF 370 (449)
T ss_pred EEEEEhhhccccchh--h--h------------------ccCCceEEEEeeCCCC-HHHHHHHHHHHHh
Confidence 899999998543111 0 0 1123345688888888 8888888887763
No 39
>PRK15494 era GTPase Era; Provisional
Probab=99.62 E-value=3.2e-15 Score=149.07 Aligned_cols=188 Identities=21% Similarity=0.259 Sum_probs=121.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.|||||||++|+|. |.++.+++. +..+++..+. ... .
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~------~~k~~ivs~-----------k~~tTr~~~~--~~~----------------~ 96 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRII------GEKLSIVTP-----------KVQTTRSIIT--GII----------------T 96 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHh------CCceeeccC-----------CCCCccCcEE--EEE----------------E
Confidence 4579999999999999999999 888888776 3333322111 000 1
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHH--HHhcCCCeeEEEeeCcchhhHHH--HHHHHhccCCceEEEEeCCCCCCCh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvda~~g~~~~~--~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+++.++|+||||.......+...+.+. .....+|.+++|+|+..+....+ ....+...-.+..+|+||+|...+.
T Consensus 97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~ 176 (339)
T PRK15494 97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY 176 (339)
T ss_pred eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc
Confidence 2357889999999864433333333221 12347899999999876432222 2233332222446889999985431
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC-------CCCchHHHHhhhcCccc
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP-------MDQQPELLQKLSEGNFT 329 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~-------~~~~~~~~~~~~~~~f~ 329 (411)
...... .+....++.+..++|++.|.| ++.|++.+.+.++ ++...+..+++...|+.
T Consensus 177 --~~~~~~-------------~l~~~~~~~~i~~iSAktg~g-v~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eii 240 (339)
T PRK15494 177 --LNDIKA-------------FLTENHPDSLLFPISALSGKN-IDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEIT 240 (339)
T ss_pred --HHHHHH-------------HHHhcCCCcEEEEEeccCccC-HHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 111111 111222345667899999999 9999999999874 44556677888888899
Q ss_pred HHHHHHHHHH
Q 015221 330 LRIMYEQFQN 339 (411)
Q Consensus 330 ~~d~~~ql~~ 339 (411)
++.++..+++
T Consensus 241 Re~~~~~~~~ 250 (339)
T PRK15494 241 REQLFLNLQK 250 (339)
T ss_pred HHHHHhhCCc
Confidence 9988888765
No 40
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.58 E-value=1e-14 Score=149.98 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhh
Q 015221 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (411)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~l 86 (411)
....+.|+++++| .++..+..||..|++.-..+++..||.++.... ..+ ..-++.+..++.++
T Consensus 129 ~~~~~~A~~~l~G-------~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~---~~~-------~~~l~~~~~~l~~l 191 (442)
T TIGR00450 129 NKVKDIALNKLAG-------ELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQ---DSL-------NQLLLSIIAELKDI 191 (442)
T ss_pred HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHeeEECCcCCCCccH---HHH-------HHHHHHHHHHHHHH
Confidence 4578889999999 889999999999999999999999997752110 011 12235566777777
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+... ...... .+..|+++|+|||||||++|+|. +...++++. .+.+++.-+..
T Consensus 192 l~~~-~~~~~~--~g~kVvIvG~~nvGKSSLiN~L~------~~~~aivs~-----------~pgtTrd~~~~------- 244 (442)
T TIGR00450 192 LNSY-KLEKLD--DGFKLAIVGSPNVGKSSLLNALL------KQDRAIVSD-----------IKGTTRDVVEG------- 244 (442)
T ss_pred HHHH-HHHHhh--cCCEEEEECCCCCcHHHHHHHHh------CCCCcccCC-----------CCCcEEEEEEE-------
Confidence 7654 222222 23569999999999999999999 776666654 11111111100
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHH-H-HHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCce
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVG 243 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~e-l-~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~ 243 (411)
.+..+++.+.++||||.....+..... + +.......+|.+++|+|++.+....+ ........-.+.
T Consensus 245 -----------~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~pi 313 (442)
T TIGR00450 245 -----------DFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPF 313 (442)
T ss_pred -----------EEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCE
Confidence 011236778999999986543222111 1 11223347899999999976532212 222222222346
Q ss_pred EEEEeCCCCCCChhhHHHHHHhcCCCeEEec
Q 015221 244 AVIVTKMDGHAKGGGALSAVAATKSPVIFIG 274 (411)
Q Consensus 244 ~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~ 274 (411)
.+|+||+|..... ........+.|+..++
T Consensus 314 IlV~NK~Dl~~~~--~~~~~~~~~~~~~~vS 342 (442)
T TIGR00450 314 ILVLNKIDLKINS--LEFFVSSKVLNSSNLS 342 (442)
T ss_pred EEEEECccCCCcc--hhhhhhhcCCceEEEE
Confidence 7899999985431 1122233445554444
No 41
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.58 E-value=4.4e-15 Score=131.51 Aligned_cols=150 Identities=25% Similarity=0.251 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.|||||||++|+|. |.+..+-+. || .+..... + .+...
T Consensus 2 ~ialvG~PNvGKStLfN~Lt------g~~~~v~n~----pG--------~Tv~~~~--g----------------~~~~~ 45 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALT------GAKQKVGNW----PG--------TTVEKKE--G----------------IFKLG 45 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TTSEEEEES----TT--------SSSEEEE--E----------------EEEET
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCceecCC----CC--------CCeeeee--E----------------EEEec
Confidence 48999999999999999999 988554332 11 1111000 0 11123
Q ss_pred CCCEEEEeCCCCCcchHHHHHH-H-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~e-l-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
+..+.+|||||.+.......+| + +......++|.+++|+|++...........+.+.-.+..+++||+|...+.|..+
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i 125 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI 125 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE
T ss_pred CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE
Confidence 6789999999965332111111 1 2223345799999999998765555555566554456789999999877655322
Q ss_pred ---HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHH
Q 015221 261 ---SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKI 307 (411)
Q Consensus 261 ---~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i 307 (411)
.+....|.| ..++|+..|.| +++|.++|
T Consensus 126 d~~~Ls~~Lg~p------------------vi~~sa~~~~g-~~~L~~~I 156 (156)
T PF02421_consen 126 DAEKLSERLGVP------------------VIPVSARTGEG-IDELKDAI 156 (156)
T ss_dssp -HHHHHHHHTS-------------------EEEEBTTTTBT-HHHHHHHH
T ss_pred CHHHHHHHhCCC------------------EEEEEeCCCcC-HHHHHhhC
Confidence 233334544 45566777777 77776654
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.3e-14 Score=145.71 Aligned_cols=241 Identities=15% Similarity=0.184 Sum_probs=151.6
Q ss_pred HHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHH--HHHHHHHHh
Q 015221 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQ--QAIFNELCK 85 (411)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~L~~ 85 (411)
++...++..+.| ........|+..|+++...++...+|-++..-. ..+.+ +.++ ..+.+++..
T Consensus 190 ~q~~~Al~~v~g-------~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~-~~~t~-------~~~~~~~~l~d~v~s 254 (531)
T KOG1191|consen 190 SQRRAALDEVAG-------EALALCFGWRKILIEALAGLEARIDFEEERPLE-EIETV-------EIFIESLSLLDDVLS 254 (531)
T ss_pred hhhhhhhhhhcc-------hhHHhhhhHHHHHHHHHhccceeechhhcCchh-hccch-------hhhhHHHHHHHHHHH
Confidence 445566777776 343444558999999999999999996542221 11111 1111 124456666
Q ss_pred hcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC
Q 015221 86 MLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165 (411)
Q Consensus 86 ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~ 165 (411)
.+........+..+ .-|+++|+|||||||++|.|+ ..+++||+. .+.++|+-+..
T Consensus 255 ~l~~~~~~e~lq~g--l~iaIvGrPNvGKSSLlNaL~------~~drsIVSp-----------v~GTTRDaiea------ 309 (531)
T KOG1191|consen 255 HLNKADEIERLQSG--LQIAIVGRPNVGKSSLLNALS------REDRSIVSP-----------VPGTTRDAIEA------ 309 (531)
T ss_pred HHHhhhhHHHhhcC--CeEEEEcCCCCCHHHHHHHHh------cCCceEeCC-----------CCCcchhhhee------
Confidence 66543333233333 459999999999999999999 999999999 44344433332
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCc-chH--HHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc--
Q 015221 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHK-QEA--ALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-- 238 (411)
Q Consensus 166 ~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~-~~~--~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-- 238 (411)
.+.-+|+.+.++||||... .++ +.+.-.+.-.....+|.+++|+||...+ ....+++....
T Consensus 310 ------------~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~ 377 (531)
T KOG1191|consen 310 ------------QVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEG 377 (531)
T ss_pred ------------EeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhc
Confidence 1223589999999999876 222 2222234444556889999999995432 22222322221
Q ss_pred -cC---------CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 239 -SV---------SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 239 -~~---------~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
.+ ....++.||.|...+. -..++.|+.|.+. +... .|.+..++|..+++| ++.|.+.+.
T Consensus 378 ~g~~~~~~~~~~~~~i~~~nk~D~~s~~------~~~~~~~~~~~~~-~~~~---~~~i~~~vs~~tkeg-~~~L~~all 446 (531)
T KOG1191|consen 378 VGLVVIVNKMEKQRIILVANKSDLVSKI------PEMTKIPVVYPSA-EGRS---VFPIVVEVSCTTKEG-CERLSTALL 446 (531)
T ss_pred cceEEEeccccccceEEEechhhccCcc------ccccCCceecccc-ccCc---ccceEEEeeechhhh-HHHHHHHHH
Confidence 11 2245678888876652 2345678888764 3322 356667799999999 999999888
Q ss_pred hhC
Q 015221 309 EVV 311 (411)
Q Consensus 309 ~~~ 311 (411)
+.+
T Consensus 447 ~~~ 449 (531)
T KOG1191|consen 447 NIV 449 (531)
T ss_pred HHH
Confidence 766
No 43
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.57 E-value=3.4e-14 Score=142.25 Aligned_cols=229 Identities=17% Similarity=0.191 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhc
Q 015221 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (411)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll 87 (411)
.+|+-++.+|.| .++..+..++. |......+++ .+.++-........+ ..-+..+.++|.++.
T Consensus 112 ~klqv~la~l~~-------~l~r~~~~~~~-l~~~~~~i~~--~g~gE~~~~~~~~~i-------~~ri~~l~~~L~~~~ 174 (351)
T TIGR03156 112 GKLQVELAQLKY-------LLPRLVGGWTH-LSRQGGGIGT--RGPGETQLETDRRLI-------RERIAQLKKELEKVE 174 (351)
T ss_pred HHHHHHHHhccc-------hhhhhhhhHHH-HHhhcCCCCC--CCCChhHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 567788888887 55555555555 5444433322 111110000001111 122355667777666
Q ss_pred CCCCCCCCCC-CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 88 DPGKPSFTPK-KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 88 ~~~~~~~~~~-~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
.........+ ......|+++|.|||||||++|+|+ |.+ .+++.-+ .+++.-.. .
T Consensus 175 ~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~------~~~-~~v~~~~-----------~tT~d~~~--~----- 229 (351)
T TIGR03156 175 KQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALT------GAD-VYAADQL-----------FATLDPTT--R----- 229 (351)
T ss_pred HHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHh------CCc-eeeccCC-----------ccccCCEE--E-----
Confidence 5422221122 1223579999999999999999999 766 3343311 11111000 0
Q ss_pred ChHHHHHHHHHHHhc-CCCCEEEEeCCCCCc-chHHHHHHHHHH-HHhcCCCeeEEEeeCcchhhH--H----HHHHHHh
Q 015221 167 DPVRIAVEGVETFKK-ENCDLIIVDTSGRHK-QEAALFEEMRQV-SEATNPDLVIFVMDSSIGQAA--F----DQAQAFK 237 (411)
Q Consensus 167 d~~~i~~~~l~~~~~-~~~d~viIDTaG~~~-~~~~l~~el~~i-~~~~~~d~vllVvda~~g~~~--~----~~a~~f~ 237 (411)
.... ++..+.|+||||... ....+.+..+.. .....+|.+++|+|++.+... . +....+.
T Consensus 230 -----------~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~ 298 (351)
T TIGR03156 230 -----------RLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELG 298 (351)
T ss_pred -----------EEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc
Confidence 0001 256889999999832 233333333322 234578999999999864321 1 1222222
Q ss_pred ccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 238 QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 238 ~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..-.+..+|+||+|..... ...... ..+.+..++|+..|.| ++.|++.+.+.
T Consensus 299 ~~~~piIlV~NK~Dl~~~~--~v~~~~------------------~~~~~~i~iSAktg~G-I~eL~~~I~~~ 350 (351)
T TIGR03156 299 AEDIPQLLVYNKIDLLDEP--RIERLE------------------EGYPEAVFVSAKTGEG-LDLLLEAIAER 350 (351)
T ss_pred cCCCCEEEEEEeecCCChH--hHHHHH------------------hCCCCEEEEEccCCCC-HHHHHHHHHhh
Confidence 1123568999999985431 111110 0122356799999999 99999988764
No 44
>PRK13768 GTPase; Provisional
Probab=99.55 E-value=1.2e-13 Score=132.29 Aligned_cols=209 Identities=18% Similarity=0.193 Sum_probs=113.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-------HHH---HHHhhhhcCc-c---eeccCCCC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQ---LKQNATKAKI-P---FYGSYTES 166 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-------~~q---L~~~~~~~~v-~---~~~~~~~~ 166 (411)
+.++++.|++||||||++.+++.+++.+|++|++|+.||..... ... ++..-...++ | +.... .-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~-~~ 80 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASV-DL 80 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHH-HH
Confidence 35789999999999999999999999999999999999853210 001 1110011111 0 00000 00
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcch--HHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH--HHHHh-----
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ--AQAFK----- 237 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~--a~~f~----- 237 (411)
...........+...+.|++++||||..... ......+.+......++.+++|+|++.+....+. ...+.
T Consensus 81 -~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~ 159 (253)
T PRK13768 81 -LLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL 159 (253)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH
Confidence 0011122233444456799999999975432 1111112111111127899999999755332221 11110
Q ss_pred ccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEec---------------ccccccccccCCcchhhhhhcCCCCHHH
Q 015221 238 QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIG---------------TGEHMDEFEVFDVKPFVSRLLGMGDWSG 302 (411)
Q Consensus 238 ~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~---------------~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~ 302 (411)
..-.+..+|+||+|........ ........|-.+.. ..+.+.++..+.+..++|+..|.| ++.
T Consensus 160 ~~~~~~i~v~nK~D~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~g-l~~ 237 (253)
T PRK13768 160 RLGLPQIPVLNKADLLSEEELE-RILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEG-FDE 237 (253)
T ss_pred HcCCCEEEEEEhHhhcCchhHH-HHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcC-HHH
Confidence 1123468899999986653211 11111110000000 001122233445667799999999 999
Q ss_pred HHHHHHhhCCC
Q 015221 303 FMDKIHEVVPM 313 (411)
Q Consensus 303 L~e~i~~~~~~ 313 (411)
|++.+.+.++.
T Consensus 238 L~~~I~~~l~~ 248 (253)
T PRK13768 238 LYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHcCC
Confidence 99999998853
No 45
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.53 E-value=2.1e-13 Score=119.31 Aligned_cols=161 Identities=25% Similarity=0.334 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..+|+++|++||||||++++++ |.+++.++.++.. ++.... .. ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~-----------~~~~~~--~~----------------~~ 47 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQT-----------TRNRIR--GI----------------YT 47 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCc-----------eeceEE--EE----------------EE
Confidence 3579999999999999999999 8888777653221 000000 00 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHH--HHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQ--VSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~--i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
..+++++++||||...........+.. ......+|.+++|+|++.. +........+...-.+..+|+||+|+....
T Consensus 48 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 48 DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH
Confidence 125789999999986544322221211 1223467999999999865 222223333333223568999999986332
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
....... +.+....++.+...+|+..|.| ++.+++.+.+.
T Consensus 128 ~~~~~~~-------------~~~~~~~~~~~~~~~s~~~~~~-~~~l~~~l~~~ 167 (168)
T cd04163 128 EDLLPLL-------------EKLKELGPFAEIFPISALKGEN-VDELLEEIVKY 167 (168)
T ss_pred HHHHHHH-------------HHHHhccCCCceEEEEeccCCC-hHHHHHHHHhh
Confidence 2222221 1122222245567789999999 99999988765
No 46
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.51 E-value=7.9e-14 Score=125.76 Aligned_cols=181 Identities=20% Similarity=0.229 Sum_probs=130.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC-C--ChHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-S--DPVRIAVEGVET 178 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~-~--d~~~i~~~~l~~ 178 (411)
..|.+.|+|||||||++-++...|+.+ +++++|..|.|.-.-.+.++.. .+.++....++ . .+..+...++++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 789999999999999999999999987 9999999999986666666652 55565554444 2 256667777887
Q ss_pred HhcC--CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 179 FKKE--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 179 ~~~~--~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
+... ..|++||.+.|-+... ..--+..+..++|+|.+.|.+...-. .---..-+.+|+||.|+.+..
T Consensus 90 l~~~~~~~Dll~iEs~GNL~~~---------~sp~L~d~~~v~VidvteGe~~P~K~--gP~i~~aDllVInK~DLa~~v 158 (202)
T COG0378 90 LVLDFPDLDLLFIESVGNLVCP---------FSPDLGDHLRVVVIDVTEGEDIPRKG--GPGIFKADLLVINKTDLAPYV 158 (202)
T ss_pred HhhcCCcCCEEEEecCcceecc---------cCcchhhceEEEEEECCCCCCCcccC--CCceeEeeEEEEehHHhHHHh
Confidence 7544 3699999999932110 00011335789999999886543210 000011268999999998888
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
|.-++... +......+-.|..++|.+.|.| ++++++.+...
T Consensus 159 ~~dlevm~------------~da~~~np~~~ii~~n~ktg~G-~~~~~~~i~~~ 199 (202)
T COG0378 159 GADLEVMA------------RDAKEVNPEAPIIFTNLKTGEG-LDEWLRFIEPQ 199 (202)
T ss_pred CccHHHHH------------HHHHHhCCCCCEEEEeCCCCcC-HHHHHHHHHhh
Confidence 88777666 5556677778888899999999 99998887654
No 47
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.48 E-value=7.8e-13 Score=122.91 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC---CChHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE---SDPVRIAVEGV 176 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~---~d~~~i~~~~l 176 (411)
.+++|+|+|++|+||||++++++..+.. +.+++++..|+......++++..+ .++.....+ .........++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~~~~D~~~~~~~~----~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVITKFDAERLRKYG----APAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCCCcccHHHHHHcC----CcEEEEcCCCcccCChHHHHHHH
Confidence 4788999999999999999999987653 679999999987654555555432 222221111 01111223455
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
..+...++|+|||+|.|.......+ ....+..+.|+|+..+.+... ....+. ....+++||+|....
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~~~---------~~~~~~~i~Vvd~~~~d~~~~~~~~~~~---~a~iiv~NK~Dl~~~ 163 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPADF---------DLGEHMRVVLLSVTEGDDKPLKYPGMFK---EADLIVINKADLAEA 163 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCccc---------ccccCeEEEEEecCcccchhhhhHhHHh---hCCEEEEEHHHcccc
Confidence 5554457899999999943211110 123455678888876543221 222222 235889999998643
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... +.+..+.+..|...+|++.|.| ++.+++.+.++.
T Consensus 164 ~~~~~~~~~------------~~l~~~~~~~~i~~~Sa~~g~g-v~~l~~~i~~~~ 206 (207)
T TIGR00073 164 VGFDVEKMK------------ADAKKINPEAEIILMSLKTGEG-LDEWLEFLEGQV 206 (207)
T ss_pred chhhHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHHhh
Confidence 211111111 1122233456778899999999 999999987753
No 48
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.45 E-value=8.4e-13 Score=116.39 Aligned_cols=136 Identities=23% Similarity=0.288 Sum_probs=85.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHH-------HHHhhhhcCcceeccCCC---CChHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ-------LKQNATKAKIPFYGSYTE---SDPVRIA 172 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~q-------L~~~~~~~~v~~~~~~~~---~d~~~i~ 172 (411)
++.++|++||||||++.+++.++...|+++.++++|+.++..... +.......++.+...... .++....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 378999999999999999999999999999999999855432111 111111122222111111 1223334
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH--HHHHHhccCCceEEEEeCC
Q 015221 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 173 ~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~--~a~~f~~~~~~~~vIlnK~ 250 (411)
.+.++.++..+||++||||||..+... .....+|.+++|+.+..+ ++.. ....|.. -..+++||+
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~---------~~~~~Ad~~ivv~tpe~~-D~y~~~k~~~~~~---~~~~~~~k~ 147 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEV---------DIASMADTTVVVMAPGAG-DDIQAIKAGIMEI---ADIVVVNKA 147 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhh---------hHHHhCCEEEEEECCCch-hHHHHhhhhHhhh---cCEEEEeCC
Confidence 555566656689999999999763321 112256889999888743 2222 2223332 268899999
Q ss_pred C
Q 015221 251 D 251 (411)
Q Consensus 251 D 251 (411)
|
T Consensus 148 ~ 148 (148)
T cd03114 148 D 148 (148)
T ss_pred C
Confidence 8
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.44 E-value=1.5e-12 Score=133.78 Aligned_cols=157 Identities=22% Similarity=0.339 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
+|+++|.|||||||++|+|. |.+.++++..+ ..++..... .....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~------~~~~~~v~~~~-----------g~t~d~~~~------------------~~~~~ 45 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLT------GKRDAIVSDTP-----------GVTRDRKYG------------------DAEWG 45 (429)
T ss_pred CEEEECCCCCCHHHHHHHHh------CCCcceecCCC-----------CcccCceEE------------------EEEEC
Confidence 38999999999999999999 87777776511 111111110 01123
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHH--HhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCChhh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~--~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~~g~ 258 (411)
+..+.|+||||.......+..++.... ....+|.+++|+|+..+... ...+..+.+.-.+..+|+||+|.......
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~ 125 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV 125 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc
Confidence 567899999998644444434443322 23378999999999876332 23444444433457889999998543211
Q ss_pred HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 259 ~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
. ......| +.+...+|+..|.| +..+++.+.+.++.
T Consensus 126 ~-~~~~~lg-----------------~~~~~~vSa~~g~g-v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 126 A-AEFYSLG-----------------FGEPIPISAEHGRG-IGDLLDAILELLPE 161 (429)
T ss_pred H-HHHHhcC-----------------CCCeEEEeCCcCCC-hHHHHHHHHHhcCc
Confidence 1 1111111 33456788889998 99999988888754
No 50
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.42 E-value=4.3e-12 Score=114.00 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=81.8
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 104 I~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
|+++ +.+|+||||++.+||.++++.|++|++||.|++++.....+. ...........++.....
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~ 66 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR---------------GPMKMGAIKQFLTDVDWG 66 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh---------------CcchHHHHHHHHHHhhcC
Confidence 4555 666999999999999999999999999999999875432111 001112233334444446
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhc-cCCceEEEEeCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ-SVSVGAVIVTKMDG 252 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~-~~~~~~vIlnK~D~ 252 (411)
+||+||||||+..... .. .......+|.+++|+.+... .+.......+.+ ..++.++|+|+.+.
T Consensus 67 ~yD~VIiD~pp~~~~~--~~----~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 67 ELDYLVIDMPPGTGDE--HL----TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCEEEEeCCCCCcHH--HH----HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 8999999999975321 11 11112356889999887632 222223333332 24567999999985
No 51
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.41 E-value=8.2e-13 Score=114.83 Aligned_cols=137 Identities=22% Similarity=0.253 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.|+++|+.|||||||+++|- |...-.- +...+.
T Consensus 2 krimliG~~g~GKTTL~q~L~------~~~~~~~-----------------KTq~i~----------------------- 35 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALN------GEEIRYK-----------------KTQAIE----------------------- 35 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHc------CCCCCcC-----------------ccceeE-----------------------
Confidence 469999999999999999998 5432110 001111
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCCh---
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG--- 256 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~~--- 256 (411)
|.=.+|||||-.-....+...+ +..+.++|.+++|.|++.... ....+..|.. +..=|+||+|.....
T Consensus 36 --~~~~~IDTPGEyiE~~~~y~aL--i~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~---pvIGVITK~Dl~~~~~~i 108 (143)
T PF10662_consen 36 --YYDNTIDTPGEYIENPRFYHAL--IVTAQDADVVLLLQDATEPRSVFPPGFASMFNK---PVIGVITKIDLPSDDANI 108 (143)
T ss_pred --ecccEEECChhheeCHHHHHHH--HHHHhhCCEEEEEecCCCCCccCCchhhcccCC---CEEEEEECccCccchhhH
Confidence 1115699999876666666665 344558899999999987643 3345666653 234578999997332
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
..+...+...| +...+.+|+..|.| +++|.+.+++
T Consensus 109 ~~a~~~L~~aG-----------------~~~if~vS~~~~eG-i~eL~~~L~~ 143 (143)
T PF10662_consen 109 ERAKKWLKNAG-----------------VKEIFEVSAVTGEG-IEELKDYLEE 143 (143)
T ss_pred HHHHHHHHHcC-----------------CCCeEEEECCCCcC-HHHHHHHHhC
Confidence 22223344333 23346789999999 9999988764
No 52
>PHA02518 ParA-like protein; Provisional
Probab=99.40 E-value=8.3e-12 Score=115.43 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=89.5
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+|++++.. ||||||++.+||.+|+++|++|++||+|+++..+...-........++... .. ......+..+ .
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~---~~---~~~~~~l~~~-~ 74 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVR---MG---KSIRADLPKV-A 74 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCCCchhh---cc---HHHHHHHHHH-h
Confidence 68888776 899999999999999999999999999999866532111110111122111 10 1122333343 3
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-----hHHHHHH---HHhccCCceEEEEeCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQ---AFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-----~~~~~a~---~f~~~~~~~~vIlnK~D~~ 253 (411)
..||+|||||||.... + .. .....+|.+++++.++... ...+... .+....+..++|.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~~---~---~~--~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDSE---L---AR--AALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCccH---H---HH--HHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 5799999999997422 1 11 1122569999999886421 1112122 2233344567888988754
Q ss_pred CCh-hhHHHHHHhcCCCe
Q 015221 254 AKG-GGALSAVAATKSPV 270 (411)
Q Consensus 254 ~~~-g~~l~~~~~~g~Pi 270 (411)
.+. ..+...+...+.|+
T Consensus 147 ~~~~~~~~~~l~~~~~~~ 164 (211)
T PHA02518 147 TQLYREARKALAGYGLPI 164 (211)
T ss_pred chHHHHHHHHHHHcCchh
Confidence 332 23444444344443
No 53
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.39 E-value=7e-12 Score=121.29 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC----CChHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE----SDPVRIAVEG 175 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~----~d~~~i~~~~ 175 (411)
+..++.|+|+|||||||++.+|...+... .+++++..|.......+.++. .++|+....++ .+ ......+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~Da~rI~~----~g~pvvqi~tG~~Chl~-a~mv~~A 176 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLD-AQMIADA 176 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHHHHHHHHh----cCCcEEEecCCCCCcCc-HHHHHHH
Confidence 35789999999999999999999888764 589999999765543343432 34454433221 22 3445677
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh-HHHHHHHHhccCCceEEEEeCCCCCC
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~-~~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
+..+...+.|++||++.|.......+ -+..+.-+.|++.+.|.+ ....-..|.. ...+|+||+|+..
T Consensus 177 l~~L~~~~~d~liIEnvGnLvcPa~f---------dlge~~~v~vlsV~eg~dkplKyp~~f~~---ADIVVLNKiDLl~ 244 (290)
T PRK10463 177 APRLPLDDNGILFIENVGNLVCPASF---------DLGEKHKVAVLSVTEGEDKPLKYPHMFAA---ASLMLLNKVDLLP 244 (290)
T ss_pred HHHHhhcCCcEEEEECCCCccCCCcc---------chhhceeEEEEECccccccchhccchhhc---CcEEEEEhHHcCc
Confidence 77777778999999999963221111 012233457777776643 2222223322 3689999999965
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.....+.... +.+..+.++.+...+|+..|.| ++.|++++.+.
T Consensus 245 ~~~~dle~~~------------~~lr~lnp~a~I~~vSA~tGeG-ld~L~~~L~~~ 287 (290)
T PRK10463 245 YLNFDVEKCI------------ACAREVNPEIEIILISATSGEG-MDQWLNWLETQ 287 (290)
T ss_pred ccHHHHHHHH------------HHHHhhCCCCcEEEEECCCCCC-HHHHHHHHHHh
Confidence 4222232222 3445566788888899999999 99999998764
No 54
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.39 E-value=9.3e-13 Score=125.59 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+.-.|+++|.|||||||++|.+. |.||..|+. +..+++..+- +..+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mi------g~kv~~vS~-----------K~~TTr~~il--gi~t--------------- 116 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMI------GQKVSAVSR-----------KVHTTRHRIL--GIIT--------------- 116 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhh------CCccccccc-----------cccceeeeee--EEEe---------------
Confidence 45679999999999999999999 999999999 7777776543 2222
Q ss_pred hcCCCCEEEEeCCCCCcchH-----HHHHHHHHHHHh-cCCCeeEEEeeCcch-----hhHHHHHHHHhccCCceEEEEe
Q 015221 180 KKENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEA-TNPDLVIFVMDSSIG-----QAAFDQAQAFKQSVSVGAVIVT 248 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~-----~l~~el~~i~~~-~~~d~vllVvda~~g-----~~~~~~a~~f~~~~~~~~vIln 248 (411)
...+++||+||||...... ..+..+..-..+ ..+|.+++|+|++.. ...++....+.. -+..+|+|
T Consensus 117 -s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~--ips~lvmn 193 (379)
T KOG1423|consen 117 -SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK--IPSILVMN 193 (379)
T ss_pred -cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc--CCceeecc
Confidence 2368999999999753321 112222222333 368999999999832 123333444432 24688999
Q ss_pred CCCCCCChhhHHHHHHhc-CCCe---------EEecc-c-cccc---ccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 249 KMDGHAKGGGALSAVAAT-KSPV---------IFIGT-G-EHMD---EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 249 K~D~~~~~g~~l~~~~~~-g~Pi---------~fi~~-G-e~i~---~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
|+|...+--..+...... .--+ +|... + +... ..--|...+++|++.|.| +++|-+.+-...+
T Consensus 194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~G-ikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEG-IKDLKQYLMSQAP 271 (379)
T ss_pred chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccC-HHHHHHHHHhcCC
Confidence 999765433333322211 0000 01000 0 0000 011255578899999999 9999999988764
No 55
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.38 E-value=7.5e-12 Score=109.16 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=90.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCC
Q 015221 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (411)
Q Consensus 105 ~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~ 184 (411)
+++|.+||||||++++|+ +.+...++..+. .++.... . .....++
T Consensus 1 ~l~G~~~~GKssl~~~l~------~~~~~~~~~~~~-----------~t~~~~~-~-----------------~~~~~~~ 45 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT------GRRDAIVEDTPG-----------VTRDRIY-G-----------------EAEWGGR 45 (157)
T ss_pred CccCCCCCCHHHHHHHHh------CCcEEeecCCCC-----------ceeCcee-E-----------------EEEECCe
Confidence 478999999999999999 766555544211 0100000 0 0112357
Q ss_pred CEEEEeCCCCCcchHHHHHHHHHH--HHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 185 DLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 185 d~viIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
.+.++||||.......+...+... .....+|.+++|+|+..+. ........+.....+..+|+||+|....... .
T Consensus 46 ~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~ 124 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-A 124 (157)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-H
Confidence 899999999876443233333221 2234679999999997542 2222233333323456889999998654321 1
Q ss_pred HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
......+ ..+...+|++.|.| ++.+++.+.+.
T Consensus 125 ~~~~~~~-----------------~~~~~~~Sa~~~~g-v~~l~~~l~~~ 156 (157)
T cd01894 125 AEFYSLG-----------------FGEPIPISAEHGRG-IGDLLDAILEL 156 (157)
T ss_pred HHHHhcC-----------------CCCeEEEecccCCC-HHHHHHHHHhh
Confidence 1111111 12346789999999 99999988765
No 56
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.38 E-value=2.5e-12 Score=130.39 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
-|+|+|+|||||||++|+|+ +.++ .|+. .+.+|+.-+. +... ..
T Consensus 161 dValVG~PNaGKSTLln~Lt------~~k~-~vs~-----------~p~TT~~p~~--Giv~----------------~~ 204 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS------AAKP-KVAD-----------YPFTTLVPNL--GVVR----------------VD 204 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh------CCcc-cccC-----------CCCCccCcEE--EEEE----------------eC
Confidence 48999999999999999999 7776 5555 2333332221 1111 11
Q ss_pred -CCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCcc---h--hhH-HHHHHHHhc---c--CCceEEEE
Q 015221 183 -NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSI---G--QAA-FDQAQAFKQ---S--VSVGAVIV 247 (411)
Q Consensus 183 -~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~---g--~~~-~~~a~~f~~---~--~~~~~vIl 247 (411)
...++|+||||...... .+...+ +.....++.+++|+|++. . .+. ......+.. . -.+..+|+
T Consensus 205 ~~~~i~~vDtPGi~~~a~~~~~Lg~~~--l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl 282 (390)
T PRK12298 205 DERSFVVADIPGLIEGASEGAGLGIRF--LKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF 282 (390)
T ss_pred CCcEEEEEeCCCccccccchhhHHHHH--HHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence 23589999999864321 122222 223346799999999862 1 111 112222221 1 14568899
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
||+|...+. ....... .+.+...+ .+..++|+..|.| ++.|++.+.+.+++
T Consensus 283 NKiDl~~~~-el~~~l~-------------~l~~~~~~~~~Vi~ISA~tg~G-IdeLl~~I~~~L~~ 334 (390)
T PRK12298 283 NKIDLLDEE-EAEERAK-------------AIVEALGWEGPVYLISAASGLG-VKELCWDLMTFIEE 334 (390)
T ss_pred eCCccCChH-HHHHHHH-------------HHHHHhCCCCCEEEEECCCCcC-HHHHHHHHHHHhhh
Confidence 999985432 1111111 01010112 2457799999999 99999999988854
No 57
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=1.6e-11 Score=127.96 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+..|+++|.|||||||++++|. |.+..+++. .. +++.|+.. ..+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~------~~~~~~~s~-----------~~------------gtT~d~~~------~~~ 254 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA------GEERSVVDD-----------VA------------GTTVDPVD------SLI 254 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCcccccC-----------CC------------CccCCcce------EEE
Confidence 45789999999999999999999 776655554 11 11111110 011
Q ss_pred hcCCCCEEEEeCCCCCcc-----hHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~-----~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~ 252 (411)
...+..+.|+||||.... ..+.+..++.......+|.+++|+|++.+.. ....+....+.-.+..+|+||+|+
T Consensus 255 ~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl 334 (472)
T PRK03003 255 ELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDL 334 (472)
T ss_pred EECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 123567899999996321 1233333433334457899999999986632 222333333333456889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
...... ........ +.+. ...+.|..++|++.|.| ++.+++.+.+.++
T Consensus 335 ~~~~~~-~~~~~~i~---------~~l~-~~~~~~~~~~SAk~g~g-v~~lf~~i~~~~~ 382 (472)
T PRK03003 335 VDEDRR-YYLEREID---------RELA-QVPWAPRVNISAKTGRA-VDKLVPALETALE 382 (472)
T ss_pred CChhHH-HHHHHHHH---------Hhcc-cCCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 543111 00100000 1111 11345677899999999 9999999988763
No 58
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=5.1e-12 Score=131.62 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=96.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.|||||||++|+|+ |.+.++++.- ++ .++..+... ..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~------~~~~~~v~~~---~g--------vT~d~~~~~------------------~~ 82 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRIL------GRREAVVEDV---PG--------VTRDRVSYD------------------AE 82 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CcCcccccCC---CC--------CCEeeEEEE------------------EE
Confidence 3569999999999999999999 7666555541 11 111111100 01
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHH--HhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~--~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
..+..+.++||||.......+...+.... ....+|.+++|+|++.+.. ....+..+...-.+..+|+||+|.....
T Consensus 83 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~ 162 (472)
T PRK03003 83 WNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE 162 (472)
T ss_pred ECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc
Confidence 23567899999997633333333332222 2337899999999987632 2233444444335678899999975321
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.. .......| +....++|++.|.| +++|++.+.+.+++
T Consensus 163 ~~-~~~~~~~g-----------------~~~~~~iSA~~g~g-i~eL~~~i~~~l~~ 200 (472)
T PRK03003 163 AD-AAALWSLG-----------------LGEPHPVSALHGRG-VGDLLDAVLAALPE 200 (472)
T ss_pred hh-hHHHHhcC-----------------CCCeEEEEcCCCCC-cHHHHHHHHhhccc
Confidence 11 11111111 11224689999999 99999988887754
No 59
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.38 E-value=6.6e-12 Score=117.02 Aligned_cols=162 Identities=13% Similarity=0.059 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHH------------HHHH-------------hhhhcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------------QLKQ-------------NATKAK 156 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~------------qL~~-------------~~~~~~ 156 (411)
++|+++|..||||||++.+||..|++.|++|++||+||+...... -+.. .....+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFGG 80 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCCC
Confidence 368899999999999999999999999999999999998643311 0110 001124
Q ss_pred cceeccCCCCC------hH-----HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc
Q 015221 157 IPFYGSYTESD------PV-----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (411)
Q Consensus 157 v~~~~~~~~~d------~~-----~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 225 (411)
+.+...+.... +. ...+ .+..+ .+.||||||||+|......-. ..+ . ...+|.+++|++++.
T Consensus 81 l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l---~-~~~ad~vliv~~p~~ 153 (212)
T cd02117 81 VKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPI---R-EGKADEIYIVTSGEF 153 (212)
T ss_pred cEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-ccc---c-cccCcEEEEEecccH
Confidence 44433222110 00 1111 22222 457999999998866322110 001 0 114689999998763
Q ss_pred hh-----hHHHHHHHHhc--cCCceEEEEeCCCCCCChhhHHHHHHhcCCCe
Q 015221 226 GQ-----AAFDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (411)
Q Consensus 226 g~-----~~~~~a~~f~~--~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi 270 (411)
-. ...+..+.+++ ...+.++|+||++..........+....+.|+
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~v 205 (212)
T cd02117 154 MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRETELIDAFAERLGTQV 205 (212)
T ss_pred HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHHHHHHHHHHHcCCCE
Confidence 21 12233444433 23457899999996522222223344445443
No 60
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=1.6e-11 Score=126.09 Aligned_cols=188 Identities=19% Similarity=0.303 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcC
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~ 156 (411)
..+.+.+.+.+....... .....+..++++|.+|+||||++++|. |.+..+++. ...+++..
T Consensus 149 ~~ll~~i~~~l~~~~~~~-~~~~~~~~v~ivG~~~~GKSsLin~l~------~~~~~~~~~-----------~~gtt~~~ 210 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEE-EEEDGPIKIAIIGRPNVGKSTLVNALL------GEERVIVSD-----------IAGTTRDS 210 (429)
T ss_pred HHHHHHHHHhcCcccccc-cccCCceEEEEECCCCCCHHHHHHHHH------CCCeeecCC-----------CCCceECc
Confidence 345566666664322211 112234679999999999999999999 776655544 11111111
Q ss_pred cceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH-
Q 015221 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAAF- 230 (411)
Q Consensus 157 v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvda~~g~~~~- 230 (411)
+.. .+...+..+.++||||..... .+.+..++.+.....+|.+++|+|++.+....
T Consensus 211 ~~~------------------~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~ 272 (429)
T TIGR03594 211 IDI------------------PFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD 272 (429)
T ss_pred EeE------------------EEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH
Confidence 110 011235678999999964221 12222233333445789999999998763322
Q ss_pred -HHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 231 -DQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 231 -~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.......+...+..+|+||+|+............... +.+. ...+.|..++|++.|.| ++.+++.+.+
T Consensus 273 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---------~~~~-~~~~~~vi~~SA~~g~~-v~~l~~~i~~ 341 (429)
T TIGR03594 273 LRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELR---------RKLP-FLDFAPIVFISALTGQG-VDKLLDAIDE 341 (429)
T ss_pred HHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHH---------Hhcc-cCCCCceEEEeCCCCCC-HHHHHHHHHH
Confidence 2233333333456889999998622111111111100 1111 11346778899999999 9999999888
Q ss_pred hC
Q 015221 310 VV 311 (411)
Q Consensus 310 ~~ 311 (411)
.+
T Consensus 342 ~~ 343 (429)
T TIGR03594 342 VY 343 (429)
T ss_pred HH
Confidence 75
No 61
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.37 E-value=1.6e-11 Score=108.58 Aligned_cols=164 Identities=20% Similarity=0.301 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+..|+++|.+|+||||++++|. +.....+...+. .++.... ..+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~------~~~~~~~~~~~~-----------~~~~~~~------------------~~~~ 46 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALL------GEERVIVSDIAG-----------TTRDSID------------------VPFE 46 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CccceeccCCCC-----------CccCcee------------------eEEE
Confidence 4569999999999999999998 554433332110 0000000 0111
Q ss_pred cCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
..+.++.++||||..... .+....+........+|.+++|+|+..+. ............-.+..+|+||+|..
T Consensus 47 ~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 47 YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 235678999999975321 01111122233334779999999987652 22222233222224568899999986
Q ss_pred CChhhHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 254 AKGGGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 254 ~~~g~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
...+...... .... +.... ....+...+|++.|.| +..+++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~Sa~~~~~-i~~~~~~l~~~ 173 (174)
T cd01895 127 EKDSKTMKEFKKEIR---------RKLPF-LDYAPIVFISALTGQG-VDKLFDAIDEV 173 (174)
T ss_pred CccHHHHHHHHHHHH---------hhccc-ccCCceEEEeccCCCC-HHHHHHHHHHh
Confidence 5421111111 1000 00100 1235567789999999 99999988764
No 62
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.36 E-value=1.8e-11 Score=113.40 Aligned_cols=175 Identities=20% Similarity=0.195 Sum_probs=101.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcch----------------HHHHHHHhhhh-cC--------
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAG----------------AFDQLKQNATK-AK-------- 156 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~----------------a~~qL~~~~~~-~~-------- 156 (411)
+|+++|.-||||||+++.|+..+..+ |++|++||+|+ -++ ..+.++..... .+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 59999999999999999988777765 59999999998 222 12333332211 11
Q ss_pred ------------------cceeccCCC-------CChHH-HHHHHHHHHhcCCCCEEEEeC-CCCCcchHHHHHHHHHHH
Q 015221 157 ------------------IPFYGSYTE-------SDPVR-IAVEGVETFKKENCDLIIVDT-SGRHKQEAALFEEMRQVS 209 (411)
Q Consensus 157 ------------------v~~~~~~~~-------~d~~~-i~~~~l~~~~~~~~d~viIDT-aG~~~~~~~l~~el~~i~ 209 (411)
+.....+.. ..|.. .+++-++++..+.|++||+|| ||..|.... +
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg-------~- 152 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRG-------T- 152 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhccc-------c-
Confidence 000010110 01222 356667777777899999999 887544321 1
Q ss_pred HhcCCCeeEEEeeCcchh-hHHHHHHHHhcc--CCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCC
Q 015221 210 EATNPDLVIFVMDSSIGQ-AAFDQAQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFD 286 (411)
Q Consensus 210 ~~~~~d~vllVvda~~g~-~~~~~a~~f~~~--~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~ 286 (411)
.-..|.+++|+|++... .....+..+.+. ++...+|+||+|.. ...........+.++.- .-|++
T Consensus 153 -~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~--e~~~~~~~~~~~~~vlg---------~iP~d 220 (255)
T COG3640 153 -IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE--EELLRELAEELGLEVLG---------VIPYD 220 (255)
T ss_pred -ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch--hHHHHhhhhccCCeEEE---------EccCC
Confidence 12569999999998531 111222222222 24578999999976 22233333444444432 23455
Q ss_pred cchhhhhhcCCC
Q 015221 287 VKPFVSRLLGMG 298 (411)
Q Consensus 287 p~~~vs~~~g~G 298 (411)
|..+-.-+.|.-
T Consensus 221 ~~v~~~dl~G~p 232 (255)
T COG3640 221 PEVVEADLKGEP 232 (255)
T ss_pred HHHHhccccCCc
Confidence 555444444443
No 63
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=7.8e-12 Score=118.52 Aligned_cols=153 Identities=16% Similarity=0.191 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-----ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-----PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-----v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l 176 (411)
..++++|++|+||||++++|+ |.. ...++..|.+.....+.+.++.....+. ....++.++ ...+
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~------g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~---~~~~~~~~v-~~~i 96 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFV------GRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKG---KKFTDFDEV-RNEI 96 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHh------CCCccccCCCcccccceEEEccCCCCcceEEEecCC---cccCCHHHH-HHHH
Confidence 358999999999999999999 543 3455555655444333333333322221 111233222 2222
Q ss_pred HHHhc---------------------CCCCEEEEeCCCCCcc-----hHHHHHHHHHHH-Hhc--CCCeeEEEeeCcch-
Q 015221 177 ETFKK---------------------ENCDLIIVDTSGRHKQ-----EAALFEEMRQVS-EAT--NPDLVIFVMDSSIG- 226 (411)
Q Consensus 177 ~~~~~---------------------~~~d~viIDTaG~~~~-----~~~l~~el~~i~-~~~--~~d~vllVvda~~g- 226 (411)
+.+.. ...++.||||||+... ...+...+..+. ... ..+.+++|+|+..+
T Consensus 97 ~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~ 176 (240)
T smart00053 97 EAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL 176 (240)
T ss_pred HHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC
Confidence 22111 1379999999999632 233333344322 222 34589999998765
Q ss_pred --hhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHH
Q 015221 227 --QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVA 264 (411)
Q Consensus 227 --~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~ 264 (411)
++....++.+......+.+|+||+|...++..+++.+.
T Consensus 177 ~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~ 216 (240)
T smart00053 177 ANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILE 216 (240)
T ss_pred CchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHh
Confidence 34456777777665667889999999877655666554
No 64
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.35 E-value=2.7e-11 Score=114.52 Aligned_cols=141 Identities=14% Similarity=0.123 Sum_probs=84.1
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
++|++.+.. ||||||++.+||.+++++|++|++||+|+++......-.. ......+.................++.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENA-LRSNTWDPACEVYAADELPLLEAAYEDAE 80 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhh-ccccCCCccceecCCCHHHHHHHHHHHHh
Confidence 467787666 9999999999999999999999999999998754321111 01110110000111122334455555555
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-----hHHHHHHH----HhccCCceEEEEeCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQA----FKQSVSVGAVIVTKMD 251 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-----~~~~~a~~----f~~~~~~~~vIlnK~D 251 (411)
..+||++||||||.... . .. .....+|.+++++.++... ........ .+..++ ..+++|+++
T Consensus 81 ~~~yD~iiID~pp~~~~--~----~~--~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 81 LQGFDYALADTHGGSSE--L----NN--TIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred hCCCCEEEEeCCCCccH--H----HH--HHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 56799999999997632 1 11 1122568888888775321 11111111 122233 468999997
Q ss_pred C
Q 015221 252 G 252 (411)
Q Consensus 252 ~ 252 (411)
.
T Consensus 152 ~ 152 (231)
T PRK13849 152 V 152 (231)
T ss_pred c
Confidence 3
No 65
>PRK11058 GTPase HflX; Provisional
Probab=99.35 E-value=8.8e-12 Score=127.78 Aligned_cols=156 Identities=15% Similarity=0.238 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.|||||||++|+|. |.++. ++.-++ ++. |+.. ..+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt------~~~~~-v~~~~~-----------tTl------------d~~~------~~i~l 241 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRIT------EARVY-AADQLF-----------ATL------------DPTL------RRIDV 241 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCcee-eccCCC-----------CCc------------CCce------EEEEe
Confidence 469999999999999999999 77766 332111 111 1100 00001
Q ss_pred CC-CCEEEEeCCCCCc-chHHHHHHHH-HHHHhcCCCeeEEEeeCcchh--hHH----HHHHHHhccCCceEEEEeCCCC
Q 015221 182 EN-CDLIIVDTSGRHK-QEAALFEEMR-QVSEATNPDLVIFVMDSSIGQ--AAF----DQAQAFKQSVSVGAVIVTKMDG 252 (411)
Q Consensus 182 ~~-~d~viIDTaG~~~-~~~~l~~el~-~i~~~~~~d~vllVvda~~g~--~~~----~~a~~f~~~~~~~~vIlnK~D~ 252 (411)
.+ ..++++||||... ....+...+. .+.....+|.+++|+|++... ... +....+.....+..+|+||+|.
T Consensus 242 ~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL 321 (426)
T PRK11058 242 ADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDM 321 (426)
T ss_pred CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccC
Confidence 12 3779999999843 2333333332 233455789999999998653 111 1122222222356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.......... ...+ .....++|+..|.| ++.|++.+.+.+.
T Consensus 322 ~~~~~~~~~~-~~~~-----------------~~~~v~ISAktG~G-IdeL~e~I~~~l~ 362 (426)
T PRK11058 322 LDDFEPRIDR-DEEN-----------------KPIRVWLSAQTGAG-IPLLFQALTERLS 362 (426)
T ss_pred CCchhHHHHH-HhcC-----------------CCceEEEeCCCCCC-HHHHHHHHHHHhh
Confidence 5432111110 0000 11125589999999 9999999998874
No 66
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=3e-11 Score=124.47 Aligned_cols=165 Identities=19% Similarity=0.282 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+..|+++|.+|+||||++++|. |....+++.- ..+++..+... +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll------~~~~~~~~~~-----------~gtt~~~~~~~------------------~ 216 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL------GEERVIVSDI-----------AGTTRDSIDTP------------------F 216 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh------CCCceeecCC-----------CCceEEEEEEE------------------E
Confidence 35779999999999999999999 8777776651 11222221110 0
Q ss_pred hcCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~ 252 (411)
...+.++.++||||..... .+.+..++.+.....+|.+++|+|++.+.... ..+....+...+..+|+||+|.
T Consensus 217 ~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl 296 (435)
T PRK00093 217 ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDL 296 (435)
T ss_pred EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 1235778999999964211 11222233333444789999999998763322 2233332323456889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .......... +.+. ...+.|..++|++.|.| +..+++.+.+..
T Consensus 297 ~~~~-~~~~~~~~~~---------~~l~-~~~~~~i~~~SA~~~~g-v~~l~~~i~~~~ 343 (435)
T PRK00093 297 VDEK-TMEEFKKELR---------RRLP-FLDYAPIVFISALTGQG-VDKLLEAIDEAY 343 (435)
T ss_pred CCHH-HHHHHHHHHH---------Hhcc-cccCCCEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 6331 1111111100 1111 11356788899999999 999999988765
No 67
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=2.1e-11 Score=125.59 Aligned_cols=156 Identities=22% Similarity=0.357 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.+|+++|.+||||||++|+|+ |.+.++++.- ++ .++.... . ....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~------~~~~~~v~~~---~~--------~t~d~~~--~----------------~~~~ 46 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT------GKRDAIVADT---PG--------VTRDRIY--G----------------EAEW 46 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCceeeCCC---CC--------CcccceE--E----------------EEEE
Confidence 368999999999999999999 8887766651 11 1111000 0 0112
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHH--HhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~--~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
.++.+.++||||.......+...+.... ....+|.+++|+|++.+... ...+..+...-.+..+|+||+|.....
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~- 125 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE- 125 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch-
Confidence 3678999999998753333444443322 23478999999999875322 223344443334568899999964421
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.........| +.....+|+..|.| +..+++.+.+..
T Consensus 126 ~~~~~~~~lg-----------------~~~~~~iSa~~g~g-v~~l~~~I~~~~ 161 (435)
T PRK00093 126 ADAYEFYSLG-----------------LGEPYPISAEHGRG-IGDLLDAILEEL 161 (435)
T ss_pred hhHHHHHhcC-----------------CCCCEEEEeeCCCC-HHHHHHHHHhhC
Confidence 1111112122 12234577888888 888888877633
No 68
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=2.3e-11 Score=132.67 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.|||||||++|+|. +.++.+++. ...++ .++.. ..+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~------~~~~~~v~~-----------~~gtT------------~d~~~------~~~~ 494 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLT------HEERAVVND-----------LAGTT------------RDPVD------EIVE 494 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CccccccCC-----------CCCCC------------cCcce------eEEE
Confidence 4679999999999999999999 777666654 11111 11111 0111
Q ss_pred cCCCCEEEEeCCCCCcc-----hHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~-----~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
.++.++.++||||.... ..+.+..++.......+|.+++|+|++.+... ........+.-.+..+|+||+|+.
T Consensus 495 ~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 495 IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 24677899999996421 12333334444444578999999999876322 223333333334578899999985
Q ss_pred CChh-hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKGG-GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~g-~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... ..+.... . .... ...+.|..++|++.|.| ++.|++.+.+.++
T Consensus 575 ~~~~~~~~~~~~--~---------~~l~-~~~~~~ii~iSAktg~g-v~~L~~~i~~~~~ 621 (712)
T PRK09518 575 DEFRRQRLERLW--K---------TEFD-RVTWARRVNLSAKTGWH-TNRLAPAMQEALE 621 (712)
T ss_pred ChhHHHHHHHHH--H---------Hhcc-CCCCCCEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 4321 1111100 0 1111 12356667899999999 9999999988764
No 69
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.32 E-value=2.3e-11 Score=105.91 Aligned_cols=150 Identities=22% Similarity=0.251 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++|+||||+++.+. +.+...++.- ++ .+.. . .. ......
T Consensus 3 ~i~l~G~~~~GKstli~~l~------~~~~~~~~~~---~~--------~~~~-~--~~---------------~~~~~~ 47 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA------GRDRAIVSDI---AG--------TTRD-V--IE---------------ESIDIG 47 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCceEeccCC---CC--------Cccc-e--EE---------------EEEEeC
Confidence 58999999999999999998 6655444431 11 0000 0 00 001123
Q ss_pred CCCEEEEeCCCCCcchHHHHHH-H-HHHHHhcCCCeeEEEeeCcchhhHHH--HHHHHhccCCceEEEEeCCCCCCChhh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEE-M-RQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGHAKGGG 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~e-l-~~i~~~~~~d~vllVvda~~g~~~~~--~a~~f~~~~~~~~vIlnK~D~~~~~g~ 258 (411)
++++.++||||..........+ . ........+|.+++|+|++......+ .... ....+..+|+||+|.......
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~ 125 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL 125 (157)
T ss_pred CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc
Confidence 5688999999975443222111 1 11222347899999999985432222 2221 222456889999998654211
Q ss_pred HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 259 ~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.......+...+|+..|.| ++.+++.+.+.+
T Consensus 126 ---------------------~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 156 (157)
T cd04164 126 ---------------------LSLLAGKPIIAISAKTGEG-LDELKEALLELA 156 (157)
T ss_pred ---------------------ccccCCCceEEEECCCCCC-HHHHHHHHHHhh
Confidence 1111234566789999999 999999887754
No 70
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.32 E-value=6.9e-11 Score=106.94 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=85.8
Q ss_pred EEE-EcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee--ccCCCCChH--------HHH
Q 015221 104 IMF-VGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY--GSYTESDPV--------RIA 172 (411)
Q Consensus 104 I~l-vG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~--~~~~~~d~~--------~i~ 172 (411)
|++ -|.+|+||||++.+||..+ ++|++||+|+++|....-+..... ....+. ......+.. ...
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIE-EEEDFIVGGKKAVIDPELCISCGLCGKL 76 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcc-ccccceecCCceEEchhhhccccchHHH
Confidence 444 4778999999999999999 799999999998775432221111 000100 000000100 000
Q ss_pred HHHHHHH-----hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEE
Q 015221 173 VEGVETF-----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAV 245 (411)
Q Consensus 173 ~~~l~~~-----~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~v 245 (411)
...+... ....||++||||||.... ... .....+|.+++|+.+... .+.....+.+.+.-...++
T Consensus 77 ~~~~~~~~~~~~~~~~~d~viiDtpp~~~~--~~~------~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~v 148 (179)
T cd03110 77 VTEVRKHAKEIAKAEGAELIIIDGPPGIGC--PVI------ASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGV 148 (179)
T ss_pred HHHHHHHHHHhhhhcCCCEEEEECcCCCcH--HHH------HHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEE
Confidence 1112211 236899999999976532 111 112357899999988643 1222233333322123589
Q ss_pred EEeCCCCCCCh-hhHHHHHHhcCCCeE
Q 015221 246 IVTKMDGHAKG-GGALSAVAATKSPVI 271 (411)
Q Consensus 246 IlnK~D~~~~~-g~~l~~~~~~g~Pi~ 271 (411)
|+||+|..... ..........|.|+.
T Consensus 149 V~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 149 VINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 99999975432 233445566677654
No 71
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.31 E-value=4.4e-11 Score=110.60 Aligned_cols=184 Identities=18% Similarity=0.254 Sum_probs=109.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhh--hcCc-ceec-----cCCCCChHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--KAKI-PFYG-----SYTESDPVRIA 172 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~--~~~v-~~~~-----~~~~~d~~~i~ 172 (411)
|..++++|++|+||||++.++...+.. ..++.++..|.+.....+.+...+- +..+ .+.. .....+.. ..
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 78 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDAS-MN 78 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHH-HH
Confidence 457999999999999999999987765 3568889999876444443333221 0011 0000 00111221 12
Q ss_pred HHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH-HHHHhccCCceEEEEeC
Q 015221 173 VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 173 ~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~-a~~f~~~~~~~~vIlnK 249 (411)
..++..+. ..++|+++|+|.|..... .+... -.+.++.|+|+..+.+.... ...+. .-+.+|+||
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l~~-~~~~~--------l~~~~i~vvD~~~~~~~~~~~~~qi~---~ad~~~~~k 146 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNLSA-TFSPE--------LADLTIFVIDVAAGDKIPRKGGPGIT---RSDLLVINK 146 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCccc-ccchh--------hhCcEEEEEEcchhhhhhhhhHhHhh---hccEEEEEh
Confidence 33344432 247999999999953111 11001 13678999999876543221 11221 125789999
Q ss_pred CCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 250 ~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+|.....+..+.... +.+..+.+..+...+|++.|.| ++.+++.+.++.
T Consensus 147 ~d~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~el~~~i~~~~ 195 (199)
T TIGR00101 147 IDLAPMVGADLGVME------------RDAKKMRGEKPFIFTNLKTKEG-LDTVIDWIEHYA 195 (199)
T ss_pred hhccccccccHHHHH------------HHHHHhCCCCCEEEEECCCCCC-HHHHHHHHHhhc
Confidence 998643222222222 2333344556667899999999 999999998765
No 72
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.30 E-value=2.9e-11 Score=111.52 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++.+. +.++...+. ++ + +.. ........ .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~------~~~~~~~~~-~~-~----------t~~-~~~~~~~~----------------~ 86 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALT------GADVYAEDQ-LF-A----------TLD-PTTRRLRL----------------P 86 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHh------cchhccCCc-cc-e----------ecc-ceeEEEEe----------------c
Confidence 579999999999999999999 543211110 00 0 000 00000000 1
Q ss_pred CCCCEEEEeCCCCCcc-hHHHHHHHHH-HHHhcCCCeeEEEeeCcchhhH--H-HHHHHHhc---cCCceEEEEeCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQ-EAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAA--F-DQAQAFKQ---SVSVGAVIVTKMDGH 253 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~-~~~l~~el~~-i~~~~~~d~vllVvda~~g~~~--~-~~a~~f~~---~~~~~~vIlnK~D~~ 253 (411)
..+.+.++||||.... .......... +.....+|.+++|+|++.+... . .....+.. .-.+..+|+||+|..
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 1348899999997432 1222222222 2223478999999999754321 1 11122221 123568899999986
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
...... ... .....+..++|+..|.| ++.+++.+...
T Consensus 167 ~~~~~~-~~~------------------~~~~~~~~~~Sa~~~~g-i~~l~~~L~~~ 203 (204)
T cd01878 167 DDEELE-ERL------------------EAGRPDAVFISAKTGEG-LDELLEAIEEL 203 (204)
T ss_pred ChHHHH-HHh------------------hcCCCceEEEEcCCCCC-HHHHHHHHHhh
Confidence 543211 000 01133556799999999 99999988765
No 73
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.30 E-value=1.1e-11 Score=110.26 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++++|. |..+.. . ....+.+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~------~~~~~~--~---------------~~~~v~~~---------------------- 37 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQ------GNYTLA--R---------------KTQAVEFN---------------------- 37 (158)
T ss_pred EEEEECCCCCCHHHHHHHHc------CCCccC--c---------------cceEEEEC----------------------
Confidence 59999999999999999998 653210 0 00011110
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCChhhHHH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGALS 261 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~ 261 (411)
.. -++||||..........++. .....+|.+++|+|++.+..... ....+.. ..+..+++||+|..... ...
T Consensus 38 ~~--~~iDtpG~~~~~~~~~~~~~--~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~-~~~ii~v~nK~Dl~~~~--~~~ 110 (158)
T PRK15467 38 DK--GDIDTPGEYFSHPRWYHALI--TTLQDVDMLIYVHGANDPESRLPAGLLDIGV-SKRQIAVISKTDMPDAD--VAA 110 (158)
T ss_pred CC--CcccCCccccCCHHHHHHHH--HHHhcCCEEEEEEeCCCcccccCHHHHhccC-CCCeEEEEEccccCccc--HHH
Confidence 01 15899997544444444432 22347899999999986632211 1122211 13457899999974321 111
Q ss_pred HHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 262 ~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
.. +.+..+....|..++|++.|.| ++.|++.+.+..+..
T Consensus 111 ~~-------------~~~~~~~~~~p~~~~Sa~~g~g-i~~l~~~l~~~~~~~ 149 (158)
T PRK15467 111 TR-------------KLLLETGFEEPIFELNSHDPQS-VQQLVDYLASLTKQE 149 (158)
T ss_pred HH-------------HHHHHcCCCCCEEEEECCCccC-HHHHHHHHHHhchhh
Confidence 11 1111222224777899999999 999999999888543
No 74
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.30 E-value=4.3e-11 Score=107.79 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=94.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|.+||||||++++|.......++.....+....+... + .. .++.... . .......+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~-----~~~~~~~--~-----------~~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKE-E-RE-----RGITIKS--G-----------VATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHH-H-HH-----cCCCeec--c-----------eEEEeeCC
Confidence 78999999999999999995443333333332211111110 0 01 1111000 0 00011225
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCChh--hH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGG--GA 259 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~~g--~~ 259 (411)
.+++++||||......... .....+|.+++|+|+..+.. .............+..+|+||+|...... ..
T Consensus 62 ~~~~liDtpG~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~ 135 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVI------RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEV 135 (189)
T ss_pred EEEEEEeCCCcHHHHHHHH------HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHH
Confidence 7899999999753222111 11236799999999986532 22233333333345688999999864211 11
Q ss_pred HHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 260 LSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 260 l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... ...+..-.....+..... ....+..++|++.|.| ++.+++.+...++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~Sa~~g~g-i~~l~~~l~~~l~ 187 (189)
T cd00881 136 LREIKELLGLIGFISTKEEGTRN-GLLVPIVPGSALTGIG-VEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHHccccccchhhhhccc-CCcceEEEEecccCcC-HHHHHHHHHhhCC
Confidence 1111 111110000000000001 1245567799999999 9999999988774
No 75
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.30 E-value=8.4e-11 Score=108.76 Aligned_cols=145 Identities=21% Similarity=0.238 Sum_probs=89.2
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHh----------------------hhhcCc
Q 015221 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN----------------------ATKAKI 157 (411)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~----------------------~~~~~v 157 (411)
+++|++++.. |+||||++.+||..+++.|++|++||+|++++.....+... ....++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 5778888555 99999999999999999999999999999876533211100 011244
Q ss_pred ceeccCCC-CChHH-----HHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-h-hH
Q 015221 158 PFYGSYTE-SDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-Q-AA 229 (411)
Q Consensus 158 ~~~~~~~~-~d~~~-----i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~-~~ 229 (411)
.+...+.. .++.. ...+.+..+ ...||+||||||+.....+. ..+. ..+|.+++|+++... . +.
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~l~~~l~~l-~~~yD~ViiD~pp~~~~~~~-----~~~~--~~~D~vilV~~~~~~~~~~~ 168 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSNFKTLIETL-RKYFDYIIIDTPPIGTVTDA-----AIIA--RACDASILVTDAGEIKKRDV 168 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCccccchH-----HHHH--HhCCeEEEEEECCCCCHHHH
Confidence 44332221 22222 123444444 35799999999985432211 0111 135999999998633 2 22
Q ss_pred HHHHHHHhc-cCCceEEEEeCCCCC
Q 015221 230 FDQAQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 230 ~~~a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
......+.+ ..++.|+|+||+|..
T Consensus 169 ~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 169 QKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHHHHHHhCCCCEEEEEEeCcccc
Confidence 223333332 235789999999964
No 76
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.30 E-value=4.7e-11 Score=113.37 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=83.3
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-------------HHHHHHh--------hhhcCccee
Q 015221 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQN--------ATKAKIPFY 160 (411)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-------------~~qL~~~--------~~~~~v~~~ 160 (411)
+|+++ +..||||||++.+||..|+++|++|++||+|++.+.+ .+.+... ....++.+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 81 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVI 81 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEE
Confidence 57777 5559999999999999999999999999999964321 1111100 011233333
Q ss_pred ccCCCC-----ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHH
Q 015221 161 GSYTES-----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQA 233 (411)
Q Consensus 161 ~~~~~~-----d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a 233 (411)
...... ...+...+.+..+ ..+||+||||||+..... .. .....+|.+++|+++... .+.....
T Consensus 82 p~~~~~~~~~~~~~~~l~~~l~~l-~~~yD~VIiD~p~~~~~~--~~------~~l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 82 PAGVSLEGLRKADPDKLEDVLKEI-IDDTDFLLIDAPAGLERD--AV------TALAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred eCCCCHHHHhhcCHHHHHHHHHHH-HhhCCEEEEeCCCccCHH--HH------HHHHhCCeEEEEECCCCchHHHHHHHH
Confidence 322110 0112234444444 347999999999876322 11 112256889999988643 1222222
Q ss_pred HHHh-ccCCceEEEEeCCCCC
Q 015221 234 QAFK-QSVSVGAVIVTKMDGH 253 (411)
Q Consensus 234 ~~f~-~~~~~~~vIlnK~D~~ 253 (411)
.... ...++.++|+|+++..
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHhcCCceEEEEEECCCch
Confidence 2121 1234578999999864
No 77
>PRK09866 hypothetical protein; Provisional
Probab=99.29 E-value=6.2e-11 Score=124.03 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=92.8
Q ss_pred CCCEEEEeCCCCCcchHH-HHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccC--CceEEEEeCCCCCCChh
Q 015221 183 NCDLIIVDTSGRHKQEAA-LFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSV--SVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~-l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~--~~~~vIlnK~D~~~~~g 257 (411)
.++++||||||.+..... +...+.. ....+|.|+||+|+..+ .+....+....+.- .+..+|+||+|...+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~e--qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQ--QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHH--HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCccc
Confidence 478999999999865333 3333433 34477999999999764 23333444444322 26788999999854322
Q ss_pred ----hHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhCC--CCC----chHHHHhhh--
Q 015221 258 ----GALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP--MDQ----QPELLQKLS-- 324 (411)
Q Consensus 258 ----~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~--~~~----~~~~~~~~~-- 324 (411)
....... +.. ....+|...+++|++.|.| ++.|++.+..+=. +-+ +++..+...
T Consensus 307 ddkE~Lle~V~------------~~L~q~~i~f~eIfPVSAlkG~n-id~LLdeI~~~~~l~~~~~~~wv~dfa~~~~gr 373 (741)
T PRK09866 307 DDADQVRALIS------------GTLMKGCITPQQIFPVSSMWGYL-ANRARHELANNGKLPPPEQQRWVEDFAHAALGR 373 (741)
T ss_pred chHHHHHHHHH------------HHHHhcCCCCceEEEEeCCCCCC-HHHHHHHHHhCCCCCchhhhHHHHHHHHHHhcc
Confidence 1122211 000 1112466778899999999 9999999998532 111 112222211
Q ss_pred ---c-CcccHHHHHHHHHHHHccCChhHHhhc
Q 015221 325 ---E-GNFTLRIMYEQFQNILKMGPIGQVFSM 352 (411)
Q Consensus 325 ---~-~~f~~~d~~~ql~~~~~~g~~~~~~~~ 352 (411)
. .-.+.+.+.+.-..+++--.+..++.-
T Consensus 374 ~w~e~d~~d~e~l~~~A~~lwedS~~~~~i~~ 405 (741)
T PRK09866 374 RWRHADLADLEHIRHAADQLWEDSLFAQPIQA 405 (741)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHH
Confidence 1 113466777777777777766666554
No 78
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.29 E-value=8.3e-12 Score=114.00 Aligned_cols=178 Identities=18% Similarity=0.193 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhh---hcCcceeccCCCCChHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT---KAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~---~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
.+.|+++|+.|+|||||+.+|.........+-..-.. ....+....... ...+......
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~----~~~~~~~~~e~~~~~ti~~~~~~~~-------------- 64 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK----NAFLDKHPEERERGITIDLSFISFE-------------- 64 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH----HCHHHSSHHHHHCTSSSSSEEEEEE--------------
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccc----cccccccchhhhccccccccccccc--------------
Confidence 3679999999999999999999655321110000000 000000010000 0111111100
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
....++.+.||||||.. ++..++. .....+|.+++|+|+..|.. ..+........-.+..+++||+|....
T Consensus 65 -~~~~~~~i~~iDtPG~~----~f~~~~~--~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 65 -KNENNRKITLIDTPGHE----DFIKEMI--RGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK 137 (188)
T ss_dssp -BTESSEEEEEEEESSSH----HHHHHHH--HHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH
T ss_pred -ccccccceeeccccccc----ceeeccc--ceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh
Confidence 01347889999999974 3433432 22447799999999987632 222333332222237889999998721
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccc--cCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFE--VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~--~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
........... .++ +.. ... .+.|..++|++.|.| ++.|++.+.+++|
T Consensus 138 --~~~~~~~~~~~--~l~---~~~-~~~~~~~~~vi~~Sa~~g~g-i~~Ll~~l~~~~P 187 (188)
T PF00009_consen 138 --ELEEIIEEIKE--KLL---KEY-GENGEEIVPVIPISALTGDG-IDELLEALVELLP 187 (188)
T ss_dssp --HHHHHHHHHHH--HHH---HHT-TSTTTSTEEEEEEBTTTTBT-HHHHHHHHHHHS-
T ss_pred --hHHHHHHHHHH--Hhc---ccc-ccCccccceEEEEecCCCCC-HHHHHHHHHHhCc
Confidence 11111110000 000 000 011 246788899999999 9999999999876
No 79
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.28 E-value=5.5e-11 Score=114.39 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
++|+++|..||||||++.+||..|+++|+||++||+||+...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 468888999999999999999999999999999999998643
No 80
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.28 E-value=2.8e-11 Score=131.97 Aligned_cols=158 Identities=19% Similarity=0.286 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.|||||||++|+|. |.+.++++. .|| .++..+... ...
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~------~~~~~iv~~---~pG--------vT~d~~~~~------------------~~~ 320 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRIL------GRREAVVED---TPG--------VTRDRVSYD------------------AEW 320 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCceeecC---CCC--------eeEEEEEEE------------------EEE
Confidence 569999999999999999999 877777765 121 111111100 112
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHH--HHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
.+..+.++||||.......+...+... .....+|.+++|+|++.+.... ..+..+...-.+..+|+||+|......
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY 400 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh
Confidence 357789999999763222222222221 2234789999999998763322 234444444456788999999754321
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
. .......| +....++|+..|.| +.+|++.+.+.++.
T Consensus 401 ~-~~~~~~lg-----------------~~~~~~iSA~~g~G-I~eLl~~i~~~l~~ 437 (712)
T PRK09518 401 D-AAEFWKLG-----------------LGEPYPISAMHGRG-VGDLLDEALDSLKV 437 (712)
T ss_pred h-HHHHHHcC-----------------CCCeEEEECCCCCC-chHHHHHHHHhccc
Confidence 1 11111111 12234689999999 99999998887754
No 81
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.27 E-value=4.3e-11 Score=106.27 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=84.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh-cCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~-~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
|+++|++||||||++++|. +.++ .++.-++ .+. ..+..+ ...
T Consensus 3 v~ivG~~~~GKStl~~~l~------~~~~-~v~~~~~-----------~t~~~~~~~~-------------------~~~ 45 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAIS------NAKP-KIADYPF-----------TTLVPNLGVV-------------------RVD 45 (170)
T ss_pred eEEECCCCCCHHHHHHHHh------cCCc-cccCCCc-----------cccCCcceEE-------------------EcC
Confidence 8999999999999999998 6544 2222111 000 000000 012
Q ss_pred CC-CEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCcch-h--hHH-HHHHHHhcc-----CCceEEEEeC
Q 015221 183 NC-DLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG-Q--AAF-DQAQAFKQS-----VSVGAVIVTK 249 (411)
Q Consensus 183 ~~-d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~g-~--~~~-~~a~~f~~~-----~~~~~vIlnK 249 (411)
++ .+.++||||...... .+.... +.....+|.+++|+|++.. . +.. .....+... ..+..+|+||
T Consensus 46 ~~~~~~l~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 123 (170)
T cd01898 46 DGRSFVVADIPGLIEGASEGKGLGHRF--LRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred CCCeEEEEecCcccCcccccCCchHHH--HHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEc
Confidence 33 789999999742111 111111 1222357899999999865 1 111 122222211 2345789999
Q ss_pred CCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 250 ~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
+|...+... ..... +..... ...+...+|+..|.| ++.+++.+.+.
T Consensus 124 ~Dl~~~~~~-~~~~~------------~~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~i~~~ 169 (170)
T cd01898 124 IDLLDEEEL-FELLK------------ELLKEL-WGKPVFPISALTGEG-LDELLRKLAEL 169 (170)
T ss_pred hhcCCchhh-HHHHH------------HHHhhC-CCCCEEEEecCCCCC-HHHHHHHHHhh
Confidence 998554321 11111 000110 123456689999999 99999988764
No 82
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.26 E-value=2e-10 Score=115.84 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=86.6
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHH---hhhh-cC---cceeccC--------
Q 015221 100 KPSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ---NATK-AK---IPFYGSY-------- 163 (411)
Q Consensus 100 ~~~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~---~~~~-~~---v~~~~~~-------- 163 (411)
..++|+++ |..|+||||++.+||..|++.|+||++||+|+|+|....-+.. .... .+ .|+...+
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~ 185 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGY 185 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHH
Confidence 34777776 7779999999999999999999999999999999875332211 0000 00 0100000
Q ss_pred --CCCC--------hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHH
Q 015221 164 --TESD--------PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (411)
Q Consensus 164 --~~~d--------~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~ 231 (411)
...+ ......+.+....++.|||+|||||+... +..+ .+.....+|.+++|..+..- .+...
T Consensus 186 l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~g-d~~l-----~~~~l~aad~viiV~tp~~~s~~da~~ 259 (369)
T PRK11670 186 LVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTG-DIQL-----TLAQNIPVTGAVVVTTPQDIALIDAKK 259 (369)
T ss_pred hcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCc-hHHH-----HHhhhccCCeEEEEecCchhHHHHHHH
Confidence 0000 11222233322234579999999988542 2111 12223356877777766422 23333
Q ss_pred HHHHHhc-cCCceEEEEeCCCCC
Q 015221 232 QAQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 232 ~a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
....+.+ .+++.|+|.|+.+..
T Consensus 260 ~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 260 GIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred HHHHHhccCCCeEEEEEcCCccc
Confidence 3444433 356789999998753
No 83
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.25 E-value=1.2e-10 Score=103.16 Aligned_cols=161 Identities=21% Similarity=0.182 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
+|+++|.+||||||++++|. +.++..... ++ .+. ....+...... ..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~------~~~~~~~~~----~~--------~t~-~~~~~~~~~~~--------------~~ 48 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIR------KTNVAAGEA----GG--------ITQ-HIGAFEVPAEV--------------LK 48 (168)
T ss_pred EEEEEecCCCCHHHHHHHHH------hcccccccC----CC--------eEE-eeccEEEeccc--------------CC
Confidence 58999999999999999998 433322110 00 000 00000000000 13
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCChh-hH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG-GA 259 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g-~~ 259 (411)
++++.++||||..... .+.. .....+|.+++|+|++.+. ........+...-.+..+|+||+|...... ..
T Consensus 49 ~~~~~iiDtpG~~~~~-----~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 122 (168)
T cd01887 49 IPGITFIDTPGHEAFT-----NMRA-RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERV 122 (168)
T ss_pred cceEEEEeCCCcHHHH-----HHHH-HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHH
Confidence 6789999999974221 1111 1123679999999998642 222222223222234688999999853321 11
Q ss_pred HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 260 LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 260 l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.......... + ........+...+|+..|.| +..|++.+.++.
T Consensus 123 ~~~~~~~~~~------~--~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 165 (168)
T cd01887 123 KNELSELGLQ------G--EDEWGGDVQIVPTSAKTGEG-IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHhhcc------c--cccccCcCcEEEeecccCCC-HHHHHHHHHHhh
Confidence 2222111100 0 00111223556789999999 999999988764
No 84
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.23 E-value=1.8e-10 Score=103.53 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=81.4
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 104 I~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
|+++ +..|+||||++.+||.+++++|++|++||+|++.+.....+ +... ....+..+. +
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~-------~~~~---~~~~~~~~~-------~--- 61 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLIL-------GLEN---RVVYTLHDV-------L--- 61 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhc-------cccc---cCCcchhhc-------c---
Confidence 4555 56699999999999999999999999999999865432211 0000 000000000 0
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCCChh-h
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-G 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g-~ 258 (411)
.-|+|||||||..... .. .....+|.+++|+++.... ......+.+.. .....++|+|+++...... .
T Consensus 62 ~~d~viiD~p~~~~~~--~~------~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 133 (179)
T cd02036 62 AGDYILIDSPAGIERG--FI------TAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGD 133 (179)
T ss_pred cCCEEEEECCCCCcHH--HH------HHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhh
Confidence 1199999999865322 11 1123568899999886431 22222233322 2345789999999754321 2
Q ss_pred HHH-HHHhcCCCe
Q 015221 259 ALS-AVAATKSPV 270 (411)
Q Consensus 259 ~l~-~~~~~g~Pi 270 (411)
... +....+.|+
T Consensus 134 ~~~~~~~~~~~~v 146 (179)
T cd02036 134 MVEDIEEILGVPL 146 (179)
T ss_pred HHHHHHHHhCCCE
Confidence 222 333456664
No 85
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.23 E-value=2.1e-10 Score=110.70 Aligned_cols=159 Identities=19% Similarity=0.159 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-----------HHHHH--------------hhhhcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ--------------NATKAK 156 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-----------~qL~~--------------~~~~~~ 156 (411)
++|+++|..||||||++.+||.+|+++|+||++||+||+...+. +-+.. .....+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~ 82 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEGYNG 82 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeCCCC
Confidence 67888898899999999999999999999999999998753321 11110 001134
Q ss_pred cceeccCCCC-----C--hHHHHHHHHHHH-hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--
Q 015221 157 IPFYGSYTES-----D--PVRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-- 226 (411)
Q Consensus 157 v~~~~~~~~~-----d--~~~i~~~~l~~~-~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-- 226 (411)
+.+....... . ........+..+ ..++||+|||||||...... +. .....+|.+++++.+...
T Consensus 83 l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~viIDt~g~~~~~~-~~------~~l~~AD~viip~~~~~~sl 155 (270)
T PRK13185 83 VDCVEAGGPPAGTGCGGYVVGETVKLLKEHHLLDDYDVILFDVLGDVVCGG-FA------APLQYADYALIVTANDFDSI 155 (270)
T ss_pred cEEEECCCCCCCCCccchhHHHHHHHHHhcCccccCCEEEEecCCCcccCc-cc------chhhhCcEEEEEecCchhhH
Confidence 4444322110 0 001011112221 13479999999988753221 11 112356888888877432
Q ss_pred ---hhHHHHHHHH--hccCCceEEEEeCCCCCCChhhHHHHHHhcCCCe
Q 015221 227 ---QAAFDQAQAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (411)
Q Consensus 227 ---~~~~~~a~~f--~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi 270 (411)
....+..... +..+.+.++|+|+.+.. ..........+.|+
T Consensus 156 ~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~---~~~~~~~~~~g~~v 201 (270)
T PRK13185 156 FAANRIAAAIQAKAKNYKVRLAGVIANRSAGT---DLIDKFNEAVGLKV 201 (270)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEeccChH---HHHHHHHHHcCCCE
Confidence 1122222211 22344578999997732 12233444455554
No 86
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.23 E-value=4.6e-11 Score=108.76 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=83.4
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH------HHhhhh-----cCcceeccCC--CCChHHHH
Q 015221 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL------KQNATK-----AKIPFYGSYT--ESDPVRIA 172 (411)
Q Consensus 106 lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL------~~~~~~-----~~v~~~~~~~--~~d~~~i~ 172 (411)
.-+..|+||||++..||.+|+++|++|+++++|++.+....-. +..... ..+....... ........
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDPELL 83 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHHHHH
T ss_pred EcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHHHHH
Confidence 3466699999999999999999999999999999887653221 110000 0000000000 00112334
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hH---HHHHHHHhccCCceEEEE
Q 015221 173 VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AA---FDQAQAFKQSVSVGAVIV 247 (411)
Q Consensus 173 ~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~---~~~a~~f~~~~~~~~vIl 247 (411)
++.++.+....||++|||||+..... . ......+|.+++++++..-. .. .+....+....+..++|+
T Consensus 84 ~~~l~~l~~~~yD~iiiD~~~~~~~~------~--~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~ 155 (195)
T PF01656_consen 84 REILESLIKSDYDYIIIDTPPGLSDP------V--RNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVI 155 (195)
T ss_dssp HHHHHHHHHTTSSEEEEEECSSSSHH------H--HHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEE
T ss_pred HHHHHHhhhccccceeecccccccHH------H--HHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEE
Confidence 55566655556999999999876443 1 11223679999999986421 11 222223322233579999
Q ss_pred eCCCCC
Q 015221 248 TKMDGH 253 (411)
Q Consensus 248 nK~D~~ 253 (411)
||++..
T Consensus 156 N~v~~~ 161 (195)
T PF01656_consen 156 NRVDPG 161 (195)
T ss_dssp EEETSC
T ss_pred eeeCCC
Confidence 999865
No 87
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.23 E-value=4.1e-10 Score=104.64 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=85.1
Q ss_pred CCeEEEEEcCC-CCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHH------------HHH-------Hhh---hhc
Q 015221 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFD------------QLK-------QNA---TKA 155 (411)
Q Consensus 100 ~~~vI~lvG~~-GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~------------qL~-------~~~---~~~ 155 (411)
..++|+++|.. |+||||++.+||..+++ .|++|++||+|++++.... .+. ... ...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 35789999655 99999999999999986 6999999999987754321 111 100 012
Q ss_pred CcceeccCCCC-ChHH-----HHHHHHHHHhcCCC--CEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-
Q 015221 156 KIPFYGSYTES-DPVR-----IAVEGVETFKKENC--DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG- 226 (411)
Q Consensus 156 ~v~~~~~~~~~-d~~~-----i~~~~l~~~~~~~~--d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g- 226 (411)
++.+...+... .+.. ...+.+..++. .| |+||||||+...... ...+.. .+|.+++|+.+...
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~~~~~-----~~~l~~--~aD~viiV~~~~~~~ 185 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLLVFSE-----ARALAR--LVGQIVLVVEEGRTT 185 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCcchhH-----HHHHHH--hCCEEEEEEECCCCC
Confidence 34443322221 1211 22344444443 35 999999998764321 111111 35899999988632
Q ss_pred h-hHHHHHHHHhccCCceEEEEe
Q 015221 227 Q-AAFDQAQAFKQSVSVGAVIVT 248 (411)
Q Consensus 227 ~-~~~~~a~~f~~~~~~~~vIln 248 (411)
. ...+....++ ..++.|+|+|
T Consensus 186 ~~~~~~~~~~l~-~~~~~G~v~N 207 (207)
T TIGR03018 186 QEAVKEALSALE-SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeC
Confidence 2 2333344444 5677899987
No 88
>CHL00175 minD septum-site determining protein; Validated
Probab=99.22 E-value=2e-10 Score=111.61 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=85.4
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH--------------HHh----------hhh
Q 015221 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL--------------KQN----------ATK 154 (411)
Q Consensus 100 ~~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL--------------~~~----------~~~ 154 (411)
..++|+++| ..|+||||++.+||.+|++.|++|++||+|++.+.....+ ... ...
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~ 93 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRW 93 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCC
Confidence 356788885 7799999999999999999999999999999754322111 000 001
Q ss_pred cCcceeccCCCCCh----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hh
Q 015221 155 AKIPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QA 228 (411)
Q Consensus 155 ~~v~~~~~~~~~d~----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~ 228 (411)
.++.+......... .......+..+....||+||||||+..... .... + ..+|.+++|+++... .+
T Consensus 94 ~~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~--~~~~---l---~~aD~viiV~~p~~~si~~ 165 (281)
T CHL00175 94 KNLSLLAISKNRQRYNVTRKNMNMLVDSLKNRGYDYILIDCPAGIDVG--FINA---I---APAQEAIVVTTPEITAIRD 165 (281)
T ss_pred CCeEEEeCCCchhhccCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH--HHHH---H---HhcCeeEEEcCCChHHHHH
Confidence 22322222211111 112334444454337999999999875321 1111 1 245889999887643 12
Q ss_pred HHHHHHHHhcc-CCceEEEEeCCCCC
Q 015221 229 AFDQAQAFKQS-VSVGAVIVTKMDGH 253 (411)
Q Consensus 229 ~~~~a~~f~~~-~~~~~vIlnK~D~~ 253 (411)
.......+.+. ....++|+|+++..
T Consensus 166 ~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 166 ADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred HHHHHHHHHHcCCCceEEEEeccChh
Confidence 22222333321 23358899999853
No 89
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.21 E-value=2.7e-10 Score=111.41 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=88.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-----------HHHHH--------------hhhhcCcc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQ--------------NATKAKIP 158 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-----------~qL~~--------------~~~~~~v~ 158 (411)
|+++|..||||||++.+||..|++.|+||++||+||+...+. +-+.. .....++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 82 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGVD 82 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCeE
Confidence 899999999999999999999999999999999999764321 11100 00012333
Q ss_pred eeccCCCCC-------hHHHHHHHHHHHh-cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hh
Q 015221 159 FYGSYTESD-------PVRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QA 228 (411)
Q Consensus 159 ~~~~~~~~d-------~~~i~~~~l~~~~-~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~ 228 (411)
+........ ........++.+. ..+||||||||||..... .+. .....+|.+++++++... ..
T Consensus 83 lip~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~IiIDt~~~l~~~-a~~------aal~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 83 CVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDIILFDVLGDVVCG-GFA------APLNYADYCIIITDNGFDALFA 155 (290)
T ss_pred EEeCCCCCCccchhhcccHHHHHHHHHhhccccCCEEEEecCCcceec-hhh------hhhhcCCEEEEEecCCHHHHHH
Confidence 332221110 0000011122222 147999999998874322 111 112357899999887632 11
Q ss_pred ---HHHHHHHHh--ccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 229 ---AFDQAQAFK--QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 229 ---~~~~a~~f~--~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
..+.++... ..+...++|+|+.+... .........+.|+.
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~---~~~~~~~~~~~~vl 200 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSKRD---LIDKYVEACPMPVL 200 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCchh---HHHHHHHHcCCceE
Confidence 122222322 12345789999998421 22334455566643
No 90
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.21 E-value=3.1e-10 Score=105.94 Aligned_cols=137 Identities=26% Similarity=0.303 Sum_probs=86.2
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh-----cCcceeccCCCCChHHHHHHH
Q 015221 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-----AKIPFYGSYTESDPVRIAVEG 175 (411)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~-----~~v~~~~~~~~~d~~~i~~~~ 175 (411)
++|.++ ...|+||||++..||..|..+|.+|.++|+||.+|-+.+ ...+.+ .++.++.. +....+..+
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W--~~~a~~~~~~~~~~~V~~~----~e~~~l~~~ 75 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW--AENAQRPGAWPDRIEVYEA----DELTILEDA 75 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH--HHhccccCCCCCCeeEEec----cchhhHHHH
Confidence 356666 445999999999999999999999999999999987632 222211 22344331 223345566
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHH---HHHHHhc---cCCceEEEE
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD---QAQAFKQ---SVSVGAVIV 247 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~---~a~~f~~---~~~~~~vIl 247 (411)
++.+...+||||||||+|....-.. .....+|.|++.+-.+.. ..+.+ ......+ .--+..|++
T Consensus 76 ~e~a~~~~~d~VlvDleG~as~~~~--------~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~ 147 (231)
T PF07015_consen 76 YEAAEASGFDFVLVDLEGGASELND--------YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLF 147 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCCchhHH--------HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEE
Confidence 6776667899999999997643211 112256887777665532 11111 1111111 112468999
Q ss_pred eCCCC
Q 015221 248 TKMDG 252 (411)
Q Consensus 248 nK~D~ 252 (411)
|++.-
T Consensus 148 Tr~~~ 152 (231)
T PF07015_consen 148 TRVPA 152 (231)
T ss_pred ecCCc
Confidence 99974
No 91
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.21 E-value=1.3e-10 Score=112.59 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=37.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++|+|+|..||||||++.+||..|+++|+||++||+||+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~ 42 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKAD 42 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 47888899999999999999999999999999999999754
No 92
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.21 E-value=5.1e-10 Score=107.89 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-----------HHHHHH--------------hhhhcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQ--------------NATKAKI 157 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-----------~~qL~~--------------~~~~~~v 157 (411)
+|++.|..||||||++.+||..|+++|+||++||+||+...+ .+-+.. .....++
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYGGV 81 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCCCc
Confidence 588889999999999999999999999999999999864221 121210 0011244
Q ss_pred ceeccCCCCC------h-HHHHHHHHHHH-hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--h
Q 015221 158 PFYGSYTESD------P-VRIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--Q 227 (411)
Q Consensus 158 ~~~~~~~~~d------~-~~i~~~~l~~~-~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~ 227 (411)
.+........ . .......++.. ...+||+|||||||...... +. .....+|.+++++.++.. .
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~vIIDt~g~~~~~~-~~------~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 82 DCVEAGGPPAGAGCGGYVVGETVKLLKELNLFEEYDVILFDVLGDVVCGG-FA------APLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred EEEEcCCCCCCccccchHHHHHHHHHHHccccccCCEEEEeCCCCccccc-ch------hhhhhcCEEEEEecCCcccHH
Confidence 4443221100 0 00011112221 13479999999998753221 10 112356899999887632 1
Q ss_pred h---HHHHHHHH--hccCCceEEEEeCCCC
Q 015221 228 A---AFDQAQAF--KQSVSVGAVIVTKMDG 252 (411)
Q Consensus 228 ~---~~~~a~~f--~~~~~~~~vIlnK~D~ 252 (411)
. ..+..... +..+++.++|+|+++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 1 12222222 1234456899999984
No 93
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.21 E-value=3.9e-10 Score=109.10 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=88.4
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH------------HH---------hhhhcC
Q 015221 99 GKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL------------KQ---------NATKAK 156 (411)
Q Consensus 99 ~~~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL------------~~---------~~~~~~ 156 (411)
+.+++|++++ .+|+||||++.+||..+++.|++|++||+|+.+|.....+ .. .....+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~ 180 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALEN 180 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCC
Confidence 3467888885 4599999999999999999999999999998776532211 10 001124
Q ss_pred cceeccCCC-CChHHH-----HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hh
Q 015221 157 IPFYGSYTE-SDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QA 228 (411)
Q Consensus 157 v~~~~~~~~-~d~~~i-----~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~ 228 (411)
+.+...+.. .++.+. ....+..+ ...|||||||||+.....+.. .+. ..+|.+++|+.+... .+
T Consensus 181 l~~lp~g~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViiD~pp~~~~~d~~-----~~~--~~~d~vilV~~~~~t~~~~ 252 (274)
T TIGR03029 181 LSVLPAGAIPPNPQELLARPAFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQ-----IVA--TRARGTLIVSRVNETRLHE 252 (274)
T ss_pred EEEEeCcCCCCCHHHHhCcHHHHHHHHHH-HhcCCEEEEeCCCcccccHHH-----HHH--HhCCeEEEEEECCCCCHHH
Confidence 444443322 233322 23444444 357999999999875432211 111 245888999987532 23
Q ss_pred HHHHHHHHhc-cCCceEEEEeC
Q 015221 229 AFDQAQAFKQ-SVSVGAVIVTK 249 (411)
Q Consensus 229 ~~~~a~~f~~-~~~~~~vIlnK 249 (411)
.....+.+.. ..++.|+|+|+
T Consensus 253 ~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 253 LTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 3334444443 35678999996
No 94
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.20 E-value=6.4e-11 Score=124.21 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|.|||||||+.|+|+ |.+.-+-+. .|+.+.... ..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LT------G~~q~VgNw-----------------pGvTVEkke-------------g~~~~ 47 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT------GANQKVGNW-----------------PGVTVEKKE-------------GKLKY 47 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh------ccCceecCC-----------------CCeeEEEEE-------------EEEEe
Confidence 459999999999999999999 866554443 334332100 12234
Q ss_pred CCCCEEEEeCCCCCcchHHHHHH--HHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhH
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEE--MRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~e--l~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~ 259 (411)
.++++.+||.||.+.....-.+| .++....-+||.++-|+||+.-........++.+--.+..+++|++|...+.|--
T Consensus 48 ~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ 127 (653)
T COG0370 48 KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIR 127 (653)
T ss_pred cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCc
Confidence 57889999999975432211112 1233334478999999999865444443333333323478899999998876654
Q ss_pred HH---HHHhcCCCeEEec
Q 015221 260 LS---AVAATKSPVIFIG 274 (411)
Q Consensus 260 l~---~~~~~g~Pi~fi~ 274 (411)
++ ..+..|+||..+.
T Consensus 128 ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 128 IDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred ccHHHHHHHhCCCEEEEE
Confidence 43 3355677765554
No 95
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.20 E-value=2.2e-10 Score=108.02 Aligned_cols=241 Identities=20% Similarity=0.258 Sum_probs=125.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc------Ccch--HH------HHHHHhhhhcCcceeccCC
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT------FRAG--AF------DQLKQNATKAKIPFYGSYT 164 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~------~r~~--a~------~qL~~~~~~~~v~~~~~~~ 164 (411)
.+|.+|.++|-.||||||++.+|..|+..++.++.+|..|| |-.. .+ +.++.+.-..+-.+ .+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI---~T 93 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI---VT 93 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch---hh
Confidence 35678999999999999999999999999999999999997 2111 11 22232221111000 00
Q ss_pred CCChH----HHHHHHHHHHhcCCCCEEEEeCCCCCcc-----hHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH----H
Q 015221 165 ESDPV----RIAVEGVETFKKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF----D 231 (411)
Q Consensus 165 ~~d~~----~i~~~~l~~~~~~~~d~viIDTaG~~~~-----~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~ 231 (411)
.-+.. +.....+++. .+.++++||||||.... .... +..-.+..-|..+.+|+|........ +
T Consensus 94 sLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsI---Ite~lass~ptvv~YvvDt~rs~~p~tFMSN 169 (366)
T KOG1532|consen 94 SLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSI---ITETLASSFPTVVVYVVDTPRSTSPTTFMSN 169 (366)
T ss_pred hHHHHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccc---hHhhHhhcCCeEEEEEecCCcCCCchhHHHH
Confidence 00100 0011122222 23589999999996422 1222 22223344688899999975432111 1
Q ss_pred --HH-HH-HhccCCceEEEEeCCCCCCChhhHHHHHH---h----cC-CCeEEecccc-cc-cccccCCcc---hhhhhh
Q 015221 232 --QA-QA-FKQSVSVGAVIVTKMDGHAKGGGALSAVA---A----TK-SPVIFIGTGE-HM-DEFEVFDVK---PFVSRL 294 (411)
Q Consensus 232 --~a-~~-f~~~~~~~~vIlnK~D~~~~~g~~l~~~~---~----~g-~Pi~fi~~Ge-~i-~~l~~f~p~---~~vs~~ 294 (411)
.+ .. ++-.+ +..+++||+|..... -++.+.. . .. ..-.|+++-- .+ --|+.|+.. .-+|+.
T Consensus 170 MlYAcSilyktkl-p~ivvfNK~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~ 247 (366)
T KOG1532|consen 170 MLYACSILYKTKL-PFIVVFNKTDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSV 247 (366)
T ss_pred HHHHHHHHHhccC-CeEEEEecccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecc
Confidence 11 11 22233 468999999986543 2322211 0 00 0111111000 00 013344432 337999
Q ss_pred cCCCCHHHHHHHHHhhCCCCC--chHHHHhhhcCcccH--HHHHHHHHHHHccCChhHH
Q 015221 295 LGMGDWSGFMDKIHEVVPMDQ--QPELLQKLSEGNFTL--RIMYEQFQNILKMGPIGQV 349 (411)
Q Consensus 295 ~g~Gdi~~L~e~i~~~~~~~~--~~~~~~~~~~~~f~~--~d~~~ql~~~~~~g~~~~~ 349 (411)
+|.| .++++.++.+..++-. -....++.+.-+-.+ +.=..|+..++|=+....+
T Consensus 248 tG~G-~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~kdm~~~~~ 305 (366)
T KOG1532|consen 248 TGEG-FDDFFTAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMKDMHVSPL 305 (366)
T ss_pred cCCc-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHhccCcccc
Confidence 9999 9999999988774321 112223332221112 2223456666655554444
No 96
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.20 E-value=9.2e-11 Score=111.38 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=65.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc------chH-HHHH---HHhhhhcCcc-----eeccCCCCChHH
Q 015221 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR------AGA-FDQL---KQNATKAKIP-----FYGSYTESDPVR 170 (411)
Q Consensus 106 lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r------~~a-~~qL---~~~~~~~~v~-----~~~~~~~~d~~~ 170 (411)
++|++||||||++..+..|+...|+++.+|..||-- |.- +..+ ....+..++. ++....-....+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999832 211 0000 0001111110 000000000001
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcC---CCeeEEEeeCcchhhHHHHHH--------HHhcc
Q 015221 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN---PDLVIFVMDSSIGQAAFDQAQ--------AFKQS 239 (411)
Q Consensus 171 i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~---~d~vllVvda~~g~~~~~~a~--------~f~~~ 239 (411)
-..+.++.. ..+|+|+||||..... .....+..+..... +-.+++++|+..-.+...... .++-.
T Consensus 81 ~l~~~i~~~---~~~y~l~DtPGQiElf-~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~ 156 (238)
T PF03029_consen 81 WLDEEIEKY---EDDYLLFDTPGQIELF-THSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE 156 (238)
T ss_dssp HHHHHHHHH---H-SEEEEE--SSHHHH-HHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhc---CCcEEEEeCCCCEEEE-EechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC
Confidence 111222222 3499999999975322 11112334444433 346889999875433222211 12222
Q ss_pred CCceEEEEeCCCCCC
Q 015221 240 VSVGAVIVTKMDGHA 254 (411)
Q Consensus 240 ~~~~~vIlnK~D~~~ 254 (411)
-+...|+||+|...
T Consensus 157 -lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 157 -LPHVNVLSKIDLLS 170 (238)
T ss_dssp -SEEEEEE--GGGS-
T ss_pred -CCEEEeeeccCccc
Confidence 24688999999976
No 97
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.20 E-value=1.4e-10 Score=106.72 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.|||||||++|.|+ |.++.....+.. + .++ .+..+ .....
T Consensus 2 ~i~lvG~~g~GKSsl~N~il------g~~~~~~~~~~~--~--------~T~-~~~~~-----------------~~~~~ 47 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTIL------GREVFESKLSAS--S--------VTK-TCQKE-----------------SAVWD 47 (196)
T ss_pred EEEEECCCCCCHHHHHHHhh------CCCccccccCCC--C--------ccc-cccee-----------------eEEEC
Confidence 48999999999999999999 887765443210 0 000 00000 01124
Q ss_pred CCCEEEEeCCCCCcch---HHHHHHHHHHHH--hcCCCeeEEEeeCcch-hhHHHHHHHHhcc-----CCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQE---AALFEEMRQVSE--ATNPDLVIFVMDSSIG-QAAFDQAQAFKQS-----VSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~---~~l~~el~~i~~--~~~~d~vllVvda~~g-~~~~~~a~~f~~~-----~~~~~vIlnK~D 251 (411)
+..+.+|||||..... .....++..... ...+|.+++|+++... .+.....+.+.+. .....+|+|++|
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcc
Confidence 6789999999987542 234444433222 2367899999998642 2222333333322 235678999999
Q ss_pred CCCC
Q 015221 252 GHAK 255 (411)
Q Consensus 252 ~~~~ 255 (411)
....
T Consensus 128 ~l~~ 131 (196)
T cd01852 128 DLEG 131 (196)
T ss_pred ccCC
Confidence 7543
No 98
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.20 E-value=1.8e-10 Score=99.32 Aligned_cols=157 Identities=16% Similarity=0.135 Sum_probs=87.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCC
Q 015221 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCD 185 (411)
Q Consensus 106 lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d 185 (411)
++|++||||||++++|. +.....++.+.. .+........ . ....++
T Consensus 1 i~G~~gsGKstl~~~l~------~~~~~~~~~~~~-----------~~~~~~~~~~--~---------------~~~~~~ 46 (163)
T cd00880 1 LFGRTNAGKSSLLNALL------GQEVAIVSPVPG-----------TTTDPVEYVW--E---------------LGPLGP 46 (163)
T ss_pred CcCCCCCCHHHHHHHHh------CccccccCCCCC-----------cEECCeEEEE--E---------------ecCCCc
Confidence 57999999999999998 554443332111 0000000000 0 001578
Q ss_pred EEEEeCCCCCcchHHHH---HHHHHHHHhcCCCeeEEEeeCcchhhHHHH--HHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 186 LIIVDTSGRHKQEAALF---EEMRQVSEATNPDLVIFVMDSSIGQAAFDQ--AQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 186 ~viIDTaG~~~~~~~l~---~el~~i~~~~~~d~vllVvda~~g~~~~~~--a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
+.++||||......... .... .....+|.+++|+|+......... ...+.....+..+|+||+|.........
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~--~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 124 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELAR--RVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEE 124 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHH--HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHH
Confidence 99999999754322111 1111 122367999999999876433332 3333333345688999999865432211
Q ss_pred HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.... ...........|...+|+..|.| +..+++.+.+.
T Consensus 125 ~~~~-----------~~~~~~~~~~~~~~~~sa~~~~~-v~~l~~~l~~~ 162 (163)
T cd00880 125 LLEL-----------RLLILLLLLGLPVIAVSALTGEG-IDELREALIEA 162 (163)
T ss_pred HHHH-----------HHhhcccccCCceEEEeeeccCC-HHHHHHHHHhh
Confidence 1100 00111222345566789999999 99998887664
No 99
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.19 E-value=5.3e-10 Score=105.99 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=84.0
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-------------HHHHHH--------hhhhcCcce
Q 015221 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQ--------NATKAKIPF 159 (411)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-------------~~qL~~--------~~~~~~v~~ 159 (411)
++|++++ ..|+||||++.+||..++++|++|++||+|++.+.. .+.+.. .....++.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence 4677876 569999999999999999999999999999976421 111110 011234444
Q ss_pred eccCCCCC-h--------HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-hH
Q 015221 160 YGSYTESD-P--------VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AA 229 (411)
Q Consensus 160 ~~~~~~~d-~--------~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-~~ 229 (411)
...+.... . ....++.+..+....||+|||||||..... . . .....+|.+++|+.+.... ..
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~---~---~--~~l~~ad~vii~~~~~~~s~~~ 153 (246)
T TIGR03371 82 LPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPI---T---R--QALAAADLVLVVVNADAACYAT 153 (246)
T ss_pred ecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHH---H---H--HHHHhCCeEEEEeCCCHHHHHH
Confidence 43222111 1 112234445554445699999999954221 1 1 1123568999999886321 11
Q ss_pred HH-HHHHHhc---cCCceEEEEeCCCCCC
Q 015221 230 FD-QAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 230 ~~-~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
.. ....+.+ .....++|+|++|...
T Consensus 154 ~~~~~~~l~~~~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 154 LHQQALALFAGSGPRIGPHFLINQFDPAR 182 (246)
T ss_pred HHHHHHHHhhcccccccceEEeeccCcch
Confidence 11 2222222 1122579999998654
No 100
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.19 E-value=8e-10 Score=101.90 Aligned_cols=125 Identities=20% Similarity=0.170 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
..|+++|..|+|||||+++|.......|....... .|... .....++.+.... ..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~---------~E~~rg~Ti~~~~-------------~~~ 60 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAP---------EEKARGITINTAH-------------VEY 60 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCCh---------hhhhcCccEEeee-------------eEe
Confidence 35899999999999999999977655553221111 11110 0011122211100 112
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhcc-CCceEEEEeCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQS-VSVGAVIVTKMDGHA 254 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~-~~~~~vIlnK~D~~~ 254 (411)
..+++.+.+|||||.. .+..++ ......+|.+++|+|+..|.. ....+...... .+...+++||+|...
T Consensus 61 ~~~~~~i~~iDtPG~~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 61 ETANRHYAHVDCPGHA----DYIKNM--ITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred cCCCeEEEEEECcCHH----HHHHHH--HHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 2346789999999974 333333 223346799999999987632 22233333222 232457899999854
No 101
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.18 E-value=2.1e-10 Score=110.97 Aligned_cols=42 Identities=29% Similarity=0.231 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
++|+++|..||||||++.+||..|+++|+||++||+|++.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 468888999999999999999999999999999999997654
No 102
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.18 E-value=4.5e-10 Score=100.80 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=63.9
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCChh-h
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKGG-G 258 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~~g-~ 258 (411)
.++.+.|+||||...... .... ....+|.+++|+|++.+.. ...........-.+..+|+||+|...... .
T Consensus 65 ~~~~~~l~Dt~G~~~~~~----~~~~--~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~ 138 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSY----EVSR--SLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPER 138 (179)
T ss_pred CcEEEEEEECCCChhhHH----HHHH--HHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHH
Confidence 357788999999853221 2211 2236799999999986522 22222222222234688999999853211 1
Q ss_pred HHH-HHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 259 ALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 259 ~l~-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
... +....+. ++.+...+|+..|.| ++.|++.+.+.++
T Consensus 139 ~~~~~~~~~~~---------------~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (179)
T cd01890 139 VKQQIEDVLGL---------------DPSEAILVSAKTGLG-VEDLLEAIVERIP 177 (179)
T ss_pred HHHHHHHHhCC---------------CcccEEEeeccCCCC-HHHHHHHHHhhCC
Confidence 111 1111111 112345799999999 9999999987764
No 103
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.17 E-value=5.7e-10 Score=107.57 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+|++.|..||||||++.+||.+|+++|+||++||+|++.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 578889999999999999999999999999999999975
No 104
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.17 E-value=3e-10 Score=110.29 Aligned_cols=40 Identities=30% Similarity=0.280 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++|+|+|..||||||++.+||..|+++|+||++||+||+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~ 41 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA 41 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence 5789999999999999999999999999999999999974
No 105
>COG2262 HflX GTPases [General function prediction only]
Probab=99.17 E-value=1.8e-10 Score=114.46 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.-..|+++|-+|+||||+.|.|. |..+..-+- .| .-|.+.+.+..+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT------~~~~~~~d~-LF-----ATLdpttR~~~l---------------------- 236 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALT------GADVYVADQ-LF-----ATLDPTTRRIEL---------------------- 236 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHh------ccCeecccc-cc-----ccccCceeEEEe----------------------
Confidence 34679999999999999999999 544432211 00 000110111111
Q ss_pred hcCCCCEEEEeCCCCC-cchHHHHHHHH-HHHHhcCCCeeEEEeeCcchh------hHHHHHHHHhccCCceEEEEeCCC
Q 015221 180 KKENCDLIIVDTSGRH-KQEAALFEEMR-QVSEATNPDLVIFVMDSSIGQ------AAFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~-~~~~~l~~el~-~i~~~~~~d~vllVvda~~g~------~~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
.++..+++-||.|+. ..+..+.+..+ .+..+..+|.++.|+|++.+. ...+......-.-.+..+|+||+|
T Consensus 237 -~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD 315 (411)
T COG2262 237 -GDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKID 315 (411)
T ss_pred -CCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccc
Confidence 126789999999974 44556666665 355667999999999998762 111122222112246788999999
Q ss_pred CCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 252 ~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.....- .+ ..+....+ +..++|+..|.| ++.|.+.+.+.++.
T Consensus 316 ~~~~~~-~~----------------~~~~~~~~--~~v~iSA~~~~g-l~~L~~~i~~~l~~ 357 (411)
T COG2262 316 LLEDEE-IL----------------AELERGSP--NPVFISAKTGEG-LDLLRERIIELLSG 357 (411)
T ss_pred ccCchh-hh----------------hhhhhcCC--CeEEEEeccCcC-HHHHHHHHHHHhhh
Confidence 765521 11 11111111 357899999999 99999999998753
No 106
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.17 E-value=4.3e-10 Score=105.33 Aligned_cols=146 Identities=20% Similarity=0.147 Sum_probs=85.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc-------chHHHHHH---------Hhhhhc-----------
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-------AGAFDQLK---------QNATKA----------- 155 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r-------~~a~~qL~---------~~~~~~----------- 155 (411)
++++.|.+|+||||++.+||.++++.|+++.++++|+.+ ++..+.+. .+..+.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 367889999999999999999999999999999999988 34333222 010000
Q ss_pred --Ccceec-cCCCCChHHHH--HHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcC--CCeeEEEeeCcch--
Q 015221 156 --KIPFYG-SYTESDPVRIA--VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATN--PDLVIFVMDSSIG-- 226 (411)
Q Consensus 156 --~v~~~~-~~~~~d~~~i~--~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~--~d~vllVvda~~g-- 226 (411)
+..+.. .....++.+.. .+.++.+....||+||||||+.....+.+ + ...... .+.+++|+.+...
T Consensus 81 ~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l---~--~~~l~~~~~~~vllV~~p~~~s~ 155 (217)
T cd02035 81 GEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLL---V--RELLTDPERTSFRLVTLPEKLPL 155 (217)
T ss_pred chhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHH---H--HHHccCCCceEEEEEeCCCccHH
Confidence 000001 11122333322 22233344334999999999864322211 1 111122 3678899887632
Q ss_pred hhHHHHHHHHhcc-CCceEEEEeCCCCC
Q 015221 227 QAAFDQAQAFKQS-VSVGAVIVTKMDGH 253 (411)
Q Consensus 227 ~~~~~~a~~f~~~-~~~~~vIlnK~D~~ 253 (411)
.+.......+... .++.++|+|+....
T Consensus 156 ~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 156 YETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 2223333333322 45679999998753
No 107
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.17 E-value=5.6e-10 Score=102.28 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=65.3
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCC-hhh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAK-GGG 258 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~-~g~ 258 (411)
+++.+.++||||..... ..... ....+|.+++|+|++.+.. ...........-.+..+|+||+|.... ...
T Consensus 63 ~~~~~~l~DtpG~~~~~----~~~~~--~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~ 136 (194)
T cd01891 63 KDTKINIVDTPGHADFG----GEVER--VLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEE 136 (194)
T ss_pred CCEEEEEEECCCcHHHH----HHHHH--HHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 46788999999975322 22221 2236799999999986421 111222222222346789999998533 211
Q ss_pred HHH----HHH-------hcCCCeEEec--ccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 259 ALS----AVA-------ATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 259 ~l~----~~~-------~~g~Pi~fi~--~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
... ... ..+.|+.+++ +|+++.+++... .+ +..|++.+.+++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~----------~~-~~~l~~~~~~~~~~ 193 (194)
T cd01891 137 VVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPS----------ED-LEPLFDTIIEHVPA 193 (194)
T ss_pred HHHHHHHHHHHhCCccccCccCEEEeehhccccccccccch----------hh-HHHHHHHHHhcCCC
Confidence 121 111 1255666666 666665554432 33 78888888887753
No 108
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.16 E-value=4.2e-10 Score=98.90 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
+|+++|.+||||||++++|. |.+....... + .. +......+.. ....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~------~~~~~~~~~~-~--------~~-~~t~~~~~~~-----------------~~~~ 48 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALT------GIETDRLPEE-K--------KR-GITIDLGFAY-----------------LDLP 48 (164)
T ss_pred EEEEEecCCCCHHHHHHHHh------Ccccccchhh-h--------cc-CceEEeeeEE-----------------EEec
Confidence 68999999999999999998 5432211110 0 00 0000010000 0011
Q ss_pred -CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCCChhh
Q 015221 183 -NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 258 (411)
Q Consensus 183 -~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~ 258 (411)
++.+.++||||... +...+. .....+|.+++|+|++.+. ...+....+.. ..++..+|+||+|.......
T Consensus 49 ~~~~~~~~DtpG~~~----~~~~~~--~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 49 SGKRLGFIDVPGHEK----FIKNML--AGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred CCcEEEEEECCChHH----HHHHHH--hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH
Confidence 56789999999632 222221 2234689999999997632 12222221211 22356789999998643211
Q ss_pred --HHHHHHhcCCCeEEeccccccccc-ccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 259 --ALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 259 --~l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
...... +.+... ....+..++|+..|.| ++.+++.+.+
T Consensus 123 ~~~~~~~~------------~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~ 163 (164)
T cd04171 123 ELVEEEIR------------ELLAGTFLADAPIFPVSAVTGEG-IEELKEYLDE 163 (164)
T ss_pred HHHHHHHH------------HHHHhcCcCCCcEEEEeCCCCcC-HHHHHHHHhh
Confidence 111111 000000 0123556789999999 9999887754
No 109
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.16 E-value=3.4e-10 Score=94.94 Aligned_cols=111 Identities=26% Similarity=0.373 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++|+|. |.+...++.- ..+++.- .+.. ....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~------~~~~~~~~~~-----------~~~T~~~--~~~~----------------~~~~ 45 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALT------GKKLAKVSNI-----------PGTTRDP--VYGQ----------------FEYN 45 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHH------TSTSSEESSS-----------TTSSSSE--EEEE----------------EEET
T ss_pred CEEEECCCCCCHHHHHHHHh------cccccccccc-----------ccceeee--eeee----------------eeec
Confidence 38999999999999999999 7776666662 1122111 1100 0013
Q ss_pred CCCEEEEeCCCCCcchHHHH--HHHHHH-HHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeC
Q 015221 183 NCDLIIVDTSGRHKQEAALF--EEMRQV-SEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~--~el~~i-~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK 249 (411)
+..+.|+||||.......-. ...... ......|.+++|+|+.... ......+.+. ...+..+|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 56779999999875432211 122222 2234679999999987642 2233444454 44567889998
No 110
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.16 E-value=4.7e-10 Score=99.47 Aligned_cols=154 Identities=20% Similarity=0.256 Sum_probs=83.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||++++|. +.+.. +...++ .+ ..+.. . .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~------~~~~~-~~~~~~-----------~t-~~~~~-~----------------~~~~~ 45 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLT------RAKPE-VAPYPF-----------TT-KSLFV-G----------------HFDYK 45 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHh------cCCCc-cCCCCC-----------cc-cceeE-E----------------EEccC
Confidence 58999999999999999998 54431 111000 00 00000 0 00112
Q ss_pred CCCEEEEeCCCCCcch---H-HH-HHHHHHHHHhcCCCeeEEEeeCcchhh-----HHHHHHHHhcc--CCceEEEEeCC
Q 015221 183 NCDLIIVDTSGRHKQE---A-AL-FEEMRQVSEATNPDLVIFVMDSSIGQA-----AFDQAQAFKQS--VSVGAVIVTKM 250 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~---~-~l-~~el~~i~~~~~~d~vllVvda~~g~~-----~~~~a~~f~~~--~~~~~vIlnK~ 250 (411)
+..+.|+||||..... . .+ ...+..+ ...+|.+++|+|++.... .......+... ..+..+|+||+
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~--~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~ 123 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITAL--AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKI 123 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHH--HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEcc
Confidence 5789999999974211 0 00 0111111 113578999999974311 11122222222 23568899999
Q ss_pred CCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 251 D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|...... ..... ..... ...+...+|++.|.| ++++++.+.+.+
T Consensus 124 Dl~~~~~--~~~~~-------------~~~~~-~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (168)
T cd01897 124 DLLTFED--LSEIE-------------EEEEL-EGEEVLKISTLTEEG-VDEVKNKACELL 167 (168)
T ss_pred ccCchhh--HHHHH-------------Hhhhh-ccCceEEEEecccCC-HHHHHHHHHHHh
Confidence 9854321 11111 11111 123445689999999 999999887654
No 111
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.16 E-value=2.5e-10 Score=98.77 Aligned_cols=138 Identities=20% Similarity=0.261 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||+++++. +.+.. +.+ ..++.
T Consensus 2 kv~liG~~~vGKSsL~~~l~------~~~~~------~~~-----------t~~~~------------------------ 34 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQ------GEEIL------YKK-----------TQAVE------------------------ 34 (142)
T ss_pred eEEEECCCCCCHHHHHHHHc------CCccc------ccc-----------ceeEE------------------------
Confidence 48999999999999999998 54321 000 00111
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
+...++||||...........+.. ....+|.+++|+|++.+.... .....+. .+..+|+||+|+..+... .
T Consensus 35 -~~~~~iDt~G~~~~~~~~~~~~~~--~~~~ad~vilv~d~~~~~s~~~~~~~~~~~---~p~ilv~NK~Dl~~~~~~-~ 107 (142)
T TIGR02528 35 -YNDGAIDTPGEYVENRRLYSALIV--TAADADVIALVQSATDPESRFPPGFASIFV---KPVIGLVTKIDLAEADVD-I 107 (142)
T ss_pred -EcCeeecCchhhhhhHHHHHHHHH--HhhcCCEEEEEecCCCCCcCCChhHHHhcc---CCeEEEEEeeccCCcccC-H
Confidence 112689999974222222222221 244789999999997653221 1112111 256788999998543211 1
Q ss_pred HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
.... +.... ..+.+...+|+..|.| ++++++.+.
T Consensus 108 ~~~~------------~~~~~-~~~~~~~~~Sa~~~~g-i~~l~~~l~ 141 (142)
T TIGR02528 108 ERAK------------ELLET-AGAEPIFEISSVDEQG-LEALVDYLN 141 (142)
T ss_pred HHHH------------HHHHH-cCCCcEEEEecCCCCC-HHHHHHHHh
Confidence 1100 00000 0122445689999999 999888763
No 112
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.16 E-value=8e-10 Score=100.61 Aligned_cols=159 Identities=23% Similarity=0.233 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
.=|+|+|++||||||++|.|. |++ .+=++. +|| ...-+.+|..
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~------~~k~LArtSk---tPG---------rTq~iNff~~------------------ 68 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALT------NQKNLARTSK---TPG---------RTQLINFFEV------------------ 68 (200)
T ss_pred cEEEEEccCcccHHHHHHHHh------CCcceeecCC---CCC---------ccceeEEEEe------------------
Confidence 459999999999999999999 755 344554 222 2222444431
Q ss_pred cCCCCEEEEeCCCCCcc--hHHHHHHHHHH----HH-hcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCC
Q 015221 181 KENCDLIIVDTSGRHKQ--EAALFEEMRQV----SE-ATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~--~~~l~~el~~i----~~-~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D 251 (411)
+-.+.+||.||+... ..+..+..... .. ..+-..+++++|+..+.... +....+...--+..+|+||+|
T Consensus 69 --~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~D 146 (200)
T COG0218 69 --DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKAD 146 (200)
T ss_pred --cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 123789999997432 12222222211 11 11335688999998774333 344444444345688999999
Q ss_pred CCCChhhH--HHHHH-hcCCCeEEecccccccccccCCc-chhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 252 GHAKGGGA--LSAVA-ATKSPVIFIGTGEHMDEFEVFDV-KPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 252 ~~~~~g~~--l~~~~-~~g~Pi~fi~~Ge~i~~l~~f~p-~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
...++... +.... ..+.+ -+..+ ..+.|...+.| ++.|...+.+.+.
T Consensus 147 Ki~~~~~~k~l~~v~~~l~~~-------------~~~~~~~~~~ss~~k~G-i~~l~~~i~~~~~ 197 (200)
T COG0218 147 KLKKSERNKQLNKVAEELKKP-------------PPDDQWVVLFSSLKKKG-IDELKAKILEWLK 197 (200)
T ss_pred cCChhHHHHHHHHHHHHhcCC-------------CCccceEEEEecccccC-HHHHHHHHHHHhh
Confidence 98765332 22221 11111 01111 55678899999 9999999888763
No 113
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.15 E-value=1.6e-09 Score=104.93 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh-cCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~-~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.++|.++|.|||||||+++++. +.++=+.+. | .+++ ..+- ++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT------~AkpEvA~Y-P-----------FTTK~i~vG-------------------hf 210 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLT------TAKPEVAPY-P-----------FTTKGIHVG-------------------HF 210 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHh------cCCCccCCC-C-----------ccccceeEe-------------------ee
Confidence 3579999999999999999999 777765554 1 1211 1111 22
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHH--HHHHHhc-CCCeeEEEeeCc--chhhHHHHHHHHhc---cC-CceEEEEeCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEM--RQVSEAT-NPDLVIFVMDSS--IGQAAFDQAQAFKQ---SV-SVGAVIVTKM 250 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el--~~i~~~~-~~d~vllVvda~--~g~~~~~~a~~f~~---~~-~~~~vIlnK~ 250 (411)
......+-+|||||.+....+-+.++ +.+.+.. -.+.|+|++|++ +|....++..-|++ .. .+..+|+||+
T Consensus 211 e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~ 290 (346)
T COG1084 211 ERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKI 290 (346)
T ss_pred ecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 23355889999999876554333333 2333322 357899999997 45444444443332 22 3578899999
Q ss_pred CCCCC
Q 015221 251 DGHAK 255 (411)
Q Consensus 251 D~~~~ 255 (411)
|....
T Consensus 291 D~~~~ 295 (346)
T COG1084 291 DIADE 295 (346)
T ss_pred cccch
Confidence 97643
No 114
>PRK04213 GTP-binding protein; Provisional
Probab=99.15 E-value=7e-10 Score=101.92 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||++++|. |.+.. ++. .|+ .+..... .
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~------~~~~~-~~~---~~~--------~t~~~~~--------------------~- 49 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELT------GKKVR-VGK---RPG--------VTRKPNH--------------------Y- 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCCc-cCC---CCc--------eeeCceE--------------------E-
Confidence 3569999999999999999998 54421 111 111 0100000 0
Q ss_pred cCCCCEEEEeCCCCCcc---hHHHHHHHHH----HH--HhcCCCeeEEEeeCcchhh-------------HHHHHHHHhc
Q 015221 181 KENCDLIIVDTSGRHKQ---EAALFEEMRQ----VS--EATNPDLVIFVMDSSIGQA-------------AFDQAQAFKQ 238 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~---~~~l~~el~~----i~--~~~~~d~vllVvda~~g~~-------------~~~~a~~f~~ 238 (411)
...++.++||||.... .....+..+. .. .+...+.+++|+|++.... .......+..
T Consensus 50 -~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 50 -DWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred -eecceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 0116899999995321 1111111221 11 1224578899999864211 1111222222
Q ss_pred cCCceEEEEeCCCCCCChhhH-HHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 239 SVSVGAVIVTKMDGHAKGGGA-LSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 239 ~~~~~~vIlnK~D~~~~~g~~-l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
.-.+..+|+||+|........ ..+....+.. + .... ..+...+|++.| | ++.+++.+.+.+++.
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~SA~~g-g-i~~l~~~l~~~~~~~ 194 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY-------P---PWRQWQDIIAPISAKKG-G-IEELKEAIRKRLHEA 194 (201)
T ss_pred cCCCeEEEEECccccCcHHHHHHHHHHHhcCC-------c---cccccCCcEEEEecccC-C-HHHHHHHHHHhhcCc
Confidence 223468899999985432111 1222222210 0 0011 134567999999 9 999999999887543
No 115
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.15 E-value=6.8e-10 Score=109.95 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=41.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
.+.++|+++|.+|+||||++.+||.+++++|++|+++++|++++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 456899999999999999999999999999999999999998754
No 116
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.15 E-value=9e-10 Score=99.63 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=64.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
+...|+++|.+|+||||++++|. +.+ +..++. . ...+ ..+.++.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~------~~~~~~~~~~--~---------~~~t-~~~~~~~----------------- 61 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALT------NRKKLARTSK--T---------PGRT-QLINFFE----------------- 61 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh------CCCCcccccC--C---------CCcc-eEEEEEE-----------------
Confidence 44578999999999999999998 543 333222 0 0000 1111111
Q ss_pred HhcCCCCEEEEeCCCCCcch------HHHHHHHHHHHH-hcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeC
Q 015221 179 FKKENCDLIIVDTSGRHKQE------AALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~------~~l~~el~~i~~-~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK 249 (411)
. +.+++++||||..... ..+...+..... ....+.+++|+|++.+.... .....+...-.+..+++||
T Consensus 62 --~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK 138 (179)
T TIGR03598 62 --V-NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTK 138 (179)
T ss_pred --e-CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 0 1267999999964321 111111212222 22457899999997643222 2233333332346788999
Q ss_pred CCCCC
Q 015221 250 MDGHA 254 (411)
Q Consensus 250 ~D~~~ 254 (411)
+|...
T Consensus 139 ~D~~~ 143 (179)
T TIGR03598 139 ADKLK 143 (179)
T ss_pred cccCC
Confidence 99864
No 117
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.14 E-value=1e-09 Score=105.86 Aligned_cols=147 Identities=19% Similarity=0.140 Sum_probs=87.9
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhh-----------------hhcCcceecc
Q 015221 101 PSVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA-----------------TKAKIPFYGS 162 (411)
Q Consensus 101 ~~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~-----------------~~~~v~~~~~ 162 (411)
.++|+++ |.+|+||||++.+||..+++.|+||+++|+|.+.|....-+.... ...++.....
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 4556665 889999999999999999999999999999998887654433211 0001111110
Q ss_pred C----CCCChHH-----HHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHH
Q 015221 163 Y----TESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (411)
Q Consensus 163 ~----~~~d~~~-----i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~ 231 (411)
. ...++.. ...+-+..+++..|||+|||||+.....+.. +. ..-++.+++|...... .+...
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~------i~-~~~~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADAT------VL-QRIPDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHH------HH-hccCCeEEEEeCCccchHHHHHH
Confidence 0 1122211 2344456666767999999998875332211 11 1134567777665422 22222
Q ss_pred HHHHHhc-cCCceEEEEeCCCCCC
Q 015221 232 QAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 232 ~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
....+.+ ..++.|+|.|+.+...
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcc
Confidence 2333332 2467899999887633
No 118
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.14 E-value=3.7e-10 Score=123.39 Aligned_cols=146 Identities=21% Similarity=0.181 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.|||||||++|+|. |.+.- +.. ..|+.+.... ..+..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Lt------g~~~~-vgn----------------~pGvTve~k~-------------g~~~~ 47 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLT------GARQR-VGN----------------WAGVTVERKE-------------GQFST 47 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCCCc-cCC----------------CCCceEeeEE-------------EEEEc
Confidence 469999999999999999998 65442 222 0111110000 00112
Q ss_pred CCCCEEEEeCCCCCcchH-----HHHHHH-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEA-----ALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~-----~l~~el-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
+++++.++||||...... ...+.+ +.......+|.+++|+|++.............+.-.+..+++||+|...+
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 467899999999754321 111111 11112237899999999987544333333333333457899999998654
Q ss_pred hhhH---HHHHHhcCCCeEEec--ccccccccc
Q 015221 256 GGGA---LSAVAATKSPVIFIG--TGEHMDEFE 283 (411)
Q Consensus 256 ~g~~---l~~~~~~g~Pi~fi~--~Ge~i~~l~ 283 (411)
.+.. ....+..|.|+..++ +|++++++.
T Consensus 128 ~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 128 QNIRIDIDALSARLGCPVIPLVSTRGRGIEALK 160 (772)
T ss_pred cCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence 3322 223455788877776 677766543
No 119
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.14 E-value=4.7e-10 Score=109.94 Aligned_cols=43 Identities=28% Similarity=0.224 Sum_probs=39.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
.++|+|.|..|+||||++.+||..|+++|+||++||+|++...
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4678888999999999999999999999999999999996543
No 120
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.13 E-value=2.9e-09 Score=101.12 Aligned_cols=201 Identities=18% Similarity=0.138 Sum_probs=106.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc-CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~-D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
|+++|.+|+||||++++|......- .+..-++. +++. +... .....++.+.. ....+..+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i-~~~g~v~~~~~~~----D~~~-~e~~rg~ti~~-------------~~~~~~~~ 62 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAI-RKLGSVDKGTTRT----DTME-LERQRGITIFS-------------AVASFQWE 62 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCc-cccccccCCcccC----CCch-hHhhCCCceee-------------eeEEEEEC
Confidence 7899999999999999998543210 01111111 0000 0000 00011111110 00112245
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC-ChhhH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA-KGGGA 259 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~-~~g~~ 259 (411)
++.+.++||||...... +... ....+|.+++|+|++.+... ..........-.+..+++||+|... .....
T Consensus 63 ~~~i~liDTPG~~~f~~----~~~~--~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~ 136 (237)
T cd04168 63 DTKVNLIDTPGHMDFIA----EVER--SLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKV 136 (237)
T ss_pred CEEEEEEeCCCccchHH----HHHH--HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHH
Confidence 78899999999864322 2221 12256999999999876322 1122222222234578999999853 33333
Q ss_pred HH-HHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHHhhhcC-cccHHHHHHHH
Q 015221 260 LS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEG-NFTLRIMYEQF 337 (411)
Q Consensus 260 l~-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~~-~f~~~d~~~ql 337 (411)
+. +....+.++.-+.....+..+. ... .-.+.|+|.+.+.= .+++++...+ +++-++++..|
T Consensus 137 ~~~i~~~~~~~~~~~~~p~~~~~~~---------~~~--~~~~~l~e~vae~d-----d~l~e~yl~~~~~~~~el~~~l 200 (237)
T cd04168 137 YQEIKEKLSSDIVPMQKVGLAPNIC---------ETN--EIDDEFWETLAEGD-----DELLEKYLEGGPIEELELDNEL 200 (237)
T ss_pred HHHHHHHHCCCeEEEECCcEeeeee---------eee--eccHHHHHHHhcCC-----HHHHHHHhCCCCCCHHHHHHHH
Confidence 33 3344554444333211111100 000 11367777776652 3466666655 89999999999
Q ss_pred HHHHccCC
Q 015221 338 QNILKMGP 345 (411)
Q Consensus 338 ~~~~~~g~ 345 (411)
+.-...|.
T Consensus 201 ~~~~~~~~ 208 (237)
T cd04168 201 SARIAKRK 208 (237)
T ss_pred HHHHHhCC
Confidence 99888873
No 121
>PRK11519 tyrosine kinase; Provisional
Probab=99.13 E-value=1.6e-09 Score=118.48 Aligned_cols=147 Identities=19% Similarity=0.237 Sum_probs=95.3
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH------------H---------HhhhhcC
Q 015221 99 GKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL------------K---------QNATKAK 156 (411)
Q Consensus 99 ~~~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL------------~---------~~~~~~~ 156 (411)
.++++|++++ .+|+||||++.+||..++..|++|++||+|+++|.....+ . ......+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 3568899998 5699999999999999999999999999999887543222 1 1111234
Q ss_pred cceeccCC-CCChHHHH-----HHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc-chhhH
Q 015221 157 IPFYGSYT-ESDPVRIA-----VEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS-IGQAA 229 (411)
Q Consensus 157 v~~~~~~~-~~d~~~i~-----~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~-~g~~~ 229 (411)
+.+...+. ..+|.+.. ...++.++ ..||+||||||+.....+... +. ..+|.+++|+... +....
T Consensus 604 l~~lp~g~~~~~~~ell~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~-----l~--~~~d~~l~Vvr~~~t~~~~ 675 (719)
T PRK11519 604 FDLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI-----VG--RHVGTTLMVARYAVNTLKE 675 (719)
T ss_pred EEEEeCCCCCCCHHHHhhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHH-----HH--HHCCeEEEEEeCCCCCHHH
Confidence 54444332 34555532 22344443 579999999999875443221 11 2458899998864 33333
Q ss_pred HH-HHHHHhc-cCCceEEEEeCCCCC
Q 015221 230 FD-QAQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 230 ~~-~a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
.. ....+.. ..++.|+|+|+++..
T Consensus 676 ~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 676 VETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 33 2333333 356789999999753
No 122
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.13 E-value=1.4e-09 Score=119.07 Aligned_cols=148 Identities=19% Similarity=0.187 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHH---------------------hhhhcC
Q 015221 99 GKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ---------------------NATKAK 156 (411)
Q Consensus 99 ~~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~---------------------~~~~~~ 156 (411)
.++++|+++|.. |+||||++.+||..++..|+||++||+|+++|.....+.. .....+
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 356889999866 9999999999999999999999999999988765432211 001124
Q ss_pred cceeccCC-CCChHHH-----HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc-h-hh
Q 015221 157 IPFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-G-QA 228 (411)
Q Consensus 157 v~~~~~~~-~~d~~~i-----~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g-~~ 228 (411)
+.+...+. ..+|.++ ....+.+++ ..||+||||||+.....+... + +..+|.+++|+.... . .+
T Consensus 609 l~vl~~g~~~~~p~ell~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~-----l--a~~ad~~llVvr~~~t~~~~ 680 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-----V--GRSVGTSLLVARFGLNTAKE 680 (726)
T ss_pred EEEEeCCCCCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH-----H--HHhCCeEEEEEeCCCCCHHH
Confidence 45444332 2345443 233344443 479999999999876543221 1 124588888888642 2 23
Q ss_pred HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 229 AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 229 ~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.......+.. ..++.|+|+|+++...
T Consensus 681 ~~~~~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 681 VSLSMQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHHHHHhCCCceEEEEEeCcccCc
Confidence 3333444433 3456899999998643
No 123
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.12 E-value=1.5e-09 Score=104.06 Aligned_cols=39 Identities=36% Similarity=0.375 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
+++++.|.+|+||||++.++|.+++++|++|++|++|+.
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 368889999999999999999999999999999999995
No 124
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=3.6e-10 Score=112.53 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=89.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
-|+|+|.|||||||++++|. +.++. |+.-++ ++.. |....... ..
T Consensus 160 dVglVG~PNaGKSTLln~ls------~a~~~-va~ypf-----------TT~~--p~~G~v~~---------------~~ 204 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVS------AAKPK-IADYPF-----------TTLH--PNLGVVRV---------------DD 204 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHH------cCCCc-cCCCCC-----------ceeC--ceEEEEEe---------------CC
Confidence 48999999999999999998 65554 333122 1111 11110000 02
Q ss_pred CCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHH----HHHHHhcc--CCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD----QAQAFKQS--VSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~----~a~~f~~~--~~~~~vIlnK~D 251 (411)
+..++++||||...... .+-.. -+.....++.+++|+|++... +... ....+... -.+..+|+||+|
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~--flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiD 282 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHR--FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKID 282 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHH--HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcc
Confidence 45789999999854221 12111 112233568999999987431 2222 12222221 135788999999
Q ss_pred CCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 252 ~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.............. ..... -.+..++|++.|.| +++|++.+.+.+.
T Consensus 283 L~~~~~~~~~~~~~------------~~~~~--~~~i~~iSAktg~G-I~eL~~~L~~~l~ 328 (335)
T PRK12299 283 LLDEEEEREKRAAL------------ELAAL--GGPVFLISAVTGEG-LDELLRALWELLE 328 (335)
T ss_pred cCCchhHHHHHHHH------------HHHhc--CCCEEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 85432111111110 00011 13456789999999 9999999988764
No 125
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.12 E-value=2.3e-09 Score=103.40 Aligned_cols=145 Identities=13% Similarity=0.127 Sum_probs=84.5
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHH--------------HHHH---------hh-hhcC
Q 015221 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD--------------QLKQ---------NA-TKAK 156 (411)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~--------------qL~~---------~~-~~~~ 156 (411)
++|++++ ..||||||++.+||..++++|++|++||+|++.+.... .+.. .. ...+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCC
Confidence 5788885 55999999999999999999999999999996433211 0100 00 1123
Q ss_pred cceeccCCCCChH----HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHH
Q 015221 157 IPFYGSYTESDPV----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (411)
Q Consensus 157 v~~~~~~~~~d~~----~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~ 230 (411)
+.+.......+.. ....+.++.++...||++||||||...... ......+|.+++|++++... ...
T Consensus 83 ~~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~--------~~~l~~ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA--------LMALYFADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEEecCCCCcchhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHH--------HHHHHhCCeEEEEcCCCchHHHhHH
Confidence 3333322111111 112344555554579999999988763221 11123569999999987431 111
Q ss_pred HHHHHHh---c-----cCCc-eEEEEeCCCCCC
Q 015221 231 DQAQAFK---Q-----SVSV-GAVIVTKMDGHA 254 (411)
Q Consensus 231 ~~a~~f~---~-----~~~~-~~vIlnK~D~~~ 254 (411)
.....+. . ..++ .++|+|++|...
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~ 187 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGR 187 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCHhh
Confidence 2222221 1 0122 478999998643
No 126
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.11 E-value=1.1e-09 Score=107.35 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH------------HHHHHhh------hhcCccee---
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------DQLKQNA------TKAKIPFY--- 160 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~------------~qL~~~~------~~~~v~~~--- 160 (411)
++|+|+|..|+||||++.+||..|+++|+||++||+|++.+.+. +-+.... ....+.+.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~ 80 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTI 80 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeeccc
Confidence 46888899999999999999999999999999999998553221 1111100 00000100
Q ss_pred -ccC--------CCCCh-------H-HHHHHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEe
Q 015221 161 -GSY--------TESDP-------V-RIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (411)
Q Consensus 161 -~~~--------~~~d~-------~-~i~~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVv 221 (411)
... ....+ . ......++.+. ...|||+||||+|...... ....+ ....+|.+++|+
T Consensus 81 ~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g-~~~~~----a~~~Ad~viVvt 155 (296)
T TIGR02016 81 MNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGG-FATPL----ARSLAEEVIVIG 155 (296)
T ss_pred cCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccc-cccch----hhhhCCeEEEEe
Confidence 000 00000 0 11123344332 2479999999987431100 00001 001468888888
Q ss_pred eCcch-----hhHHHHHHHHhc---cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEE
Q 015221 222 DSSIG-----QAAFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (411)
Q Consensus 222 da~~g-----~~~~~~a~~f~~---~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~f 272 (411)
.+... .........+.+ ..++.++|+|+.+... ......+..+.|+.-
T Consensus 156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~---~~~~~~~~~~i~vLg 211 (296)
T TIGR02016 156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG---EAQAFAREVGIPVLA 211 (296)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc---HHHHHHHHcCCCeEE
Confidence 76522 112222333433 2457899999998632 344556667777644
No 127
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.11 E-value=6.7e-10 Score=97.14 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCCcchH-HHHHHHHH-HHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 183 NCDLIIVDTSGRHKQEA-ALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~-~l~~el~~-i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
+.++.++||||...... .....+.. ......+|.+++|+|+................-.+..+|+||+|.........
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~ 121 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKI 121 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchh
Confidence 56789999999743221 01111211 11113689999999997643323332222222235688999999854311100
Q ss_pred HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. +.+.... ..+...+|+..|.| +..+++.+....
T Consensus 122 ~~--------------~~~~~~~-~~~~~~iSa~~~~~-~~~l~~~l~~~~ 156 (158)
T cd01879 122 DL--------------DKLSELL-GVPVVPTSARKGEG-IDELKDAIAELA 156 (158)
T ss_pred hH--------------HHHHHhh-CCCeEEEEccCCCC-HHHHHHHHHHHh
Confidence 00 0010000 12456789999999 999999887764
No 128
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.11 E-value=2e-09 Score=104.23 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGA 144 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a 144 (411)
++|+|+|..||||||++.+||..|++ +|+||++||+||+...+
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t 46 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADST 46 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChH
Confidence 57888898899999999999999997 59999999999986543
No 129
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=7.8e-10 Score=113.07 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=87.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
-|+|+|.|||||||++++|+ +.++.+ +.-++ ++. .|.+..... ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt------~ak~kI-a~ypf-----------TTl--~PnlG~v~~---------------~~ 204 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVS------NAKPKI-ANYHF-----------TTL--VPNLGVVET---------------DD 204 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHH------cCCCcc-ccCCc-----------cee--ceEEEEEEE---------------eC
Confidence 58999999999999999999 666553 22111 111 011110000 01
Q ss_pred CCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCcch--hhH---HH----HHHHHhcc--CCceEEEEe
Q 015221 183 NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG--QAA---FD----QAQAFKQS--VSVGAVIVT 248 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~g--~~~---~~----~a~~f~~~--~~~~~vIln 248 (411)
+..++++||||...... .+... -+.....++.+++|+|++.. .+. .. ....+... -.+..+|+|
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~--fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQ--FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred CceEEEEECCCCcccccccchHHHH--HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence 46799999999853221 12111 12223357999999998632 111 11 12222221 235689999
Q ss_pred CCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 249 K~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
|+|+.........+....+ .+..++|++.|.| ++.|++.+.+.+.+
T Consensus 283 K~DL~~~~e~l~~l~~~l~------------------~~i~~iSA~tgeG-I~eL~~~L~~~l~~ 328 (424)
T PRK12297 283 KMDLPEAEENLEEFKEKLG------------------PKVFPISALTGQG-LDELLYAVAELLEE 328 (424)
T ss_pred CCCCcCCHHHHHHHHHHhC------------------CcEEEEeCCCCCC-HHHHHHHHHHHHHh
Confidence 9997332111111111111 2445689999999 99999998877643
No 130
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.10 E-value=1.2e-09 Score=97.33 Aligned_cols=144 Identities=21% Similarity=0.259 Sum_probs=83.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCC-------CCChHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-------ESDPVRIAVEG 175 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~-------~~d~~~i~~~~ 175 (411)
++.++|..|+||||++.+++... .|++++++..|....+-..++.. ..+.+++.... ..+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~~~~---~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQLVV---DTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHHHHh---CCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 67899999999999999998653 47889888887544332222221 12223332221 12222222222
Q ss_pred HHHH--hcCCCCEEEEeCCCCCcchHHHHHHH---HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC-CceEEEEeC
Q 015221 176 VETF--KKENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTK 249 (411)
Q Consensus 176 l~~~--~~~~~d~viIDTaG~~~~~~~l~~el---~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~-~~~~vIlnK 249 (411)
+..+ ...++|+|+|||||...... +.+.+ .........+.+++|+|+.......+....+.+++ .-+.+|+||
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p~~-~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivlnk 155 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADPGP-VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNK 155 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCHHH-HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEec
Confidence 2332 23479999999999986553 33322 12233446788999999976543332112222222 126889999
Q ss_pred CCC
Q 015221 250 MDG 252 (411)
Q Consensus 250 ~D~ 252 (411)
+|+
T Consensus 156 ~dl 158 (158)
T cd03112 156 TDL 158 (158)
T ss_pred ccC
Confidence 995
No 131
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.10 E-value=6.9e-10 Score=104.53 Aligned_cols=195 Identities=15% Similarity=0.084 Sum_probs=98.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH--------HHHHHhhhhcCcceeccCCCCChHHHHHHH
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF--------DQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~--------~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~ 175 (411)
|+++|.+|+||||+++++.......|...+....|.++...- ...-... ..+... .+...... ..+
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~-~~~~~~--~~~~~~~~---~~~ 75 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFD-SDGEVV--NYPDNHLS---ESD 75 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccC-CCCcee--cCCCCccc---ccc
Confidence 788999999999999999964444455444444443221100 0000000 000000 00000000 000
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCC
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
.+.+...++.+.+|||||.. .+...+..-.....+|.+++|+|+..+.. ....+......-.+..+|+||+|..
T Consensus 76 ~~~~~~~~~~i~liDtpG~~----~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 76 IEICEKSSKLVTFIDLAGHE----RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred ceeeeeCCcEEEEEECCCcH----HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 11223457889999999964 22222211111135899999999976532 2223333332222368899999985
Q ss_pred CChh--hHHHHH-HhcC------CCeEEeccccccc-----ccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 254 AKGG--GALSAV-AATK------SPVIFIGTGEHMD-----EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 254 ~~~g--~~l~~~-~~~g------~Pi~fi~~Ge~i~-----~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.+.. ..+... .... .|.......+-+. ......|...+|+..|.| ++.|.+.+..
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G-i~~L~~~L~~ 220 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG-LDLLHAFLNL 220 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC-HHHHHHHHHh
Confidence 4421 122211 1222 2332222111111 122345778899999999 9888877654
No 132
>PRK10037 cell division protein; Provisional
Probab=99.10 E-value=1.9e-09 Score=103.00 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=81.1
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-------------HHHHH--------hhhhcCcce
Q 015221 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ--------NATKAKIPF 159 (411)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-------------~qL~~--------~~~~~~v~~ 159 (411)
++|++++.. ||||||++.+||..|+++|+||++||+|+++.... +.+.. .....++.+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 81 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL 81 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEE
Confidence 368888665 99999999999999999999999999999763221 00000 000123333
Q ss_pred eccCCCCC-----hH------HHHHHHHHHHhc-CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh
Q 015221 160 YGSYTESD-----PV------RIAVEGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ 227 (411)
Q Consensus 160 ~~~~~~~d-----~~------~i~~~~l~~~~~-~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~ 227 (411)
........ +. ....+.+..+.. ..||++||||||..... . ......+|.+++++.+...
T Consensus 82 ip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~--~------~~al~aaD~vlvpv~~~~~- 152 (250)
T PRK10037 82 LPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPL--T------RQLLSLCDHSLAIVNVDAN- 152 (250)
T ss_pred EcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHH--H------HHHHHhCCEEEEEcCcCHH-
Confidence 33211100 00 012334444432 57999999999985321 1 1122356999999987532
Q ss_pred hHHHHHHHHhccC-CceEEEEeCCCCCC
Q 015221 228 AAFDQAQAFKQSV-SVGAVIVTKMDGHA 254 (411)
Q Consensus 228 ~~~~~a~~f~~~~-~~~~vIlnK~D~~~ 254 (411)
. ..+...... ....+++|+++...
T Consensus 153 ~---~i~~~~~~~~~~~~i~~n~~~~~~ 177 (250)
T PRK10037 153 C---HIRLHQQALPAGAHILINDLRIGS 177 (250)
T ss_pred H---HHhhhccccCCCeEEEEecCCccc
Confidence 1 222222211 12356789987433
No 133
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.09 E-value=9.6e-10 Score=106.45 Aligned_cols=42 Identities=29% Similarity=0.247 Sum_probs=38.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
++|++.|..||||||++.+||..|+++|++|++||.|++...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 368999999999999999999999999999999999987543
No 134
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.09 E-value=7.3e-09 Score=100.03 Aligned_cols=155 Identities=19% Similarity=0.272 Sum_probs=81.0
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCC-hh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAK-GG 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~-~g 257 (411)
.+++++.++||||... +..+... ....+|.+++|+|++.+.... .........-.+..+++||+|.... ..
T Consensus 61 ~~~~~i~liDtPG~~~----f~~~~~~--~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 61 WKGHKINLIDTPGYAD----FVGETRA--ALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred ECCEEEEEEECcCHHH----HHHHHHH--HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 4578999999999752 2222222 223569999999998763221 2222222222346789999998543 22
Q ss_pred hHHH-HHHhcCCCeEEe----cccccccccccCCc-chh-hhh-----hcCCC-CH--------HHHHHHHHhhCCCCCc
Q 015221 258 GALS-AVAATKSPVIFI----GTGEHMDEFEVFDV-KPF-VSR-----LLGMG-DW--------SGFMDKIHEVVPMDQQ 316 (411)
Q Consensus 258 ~~l~-~~~~~g~Pi~fi----~~Ge~i~~l~~f~p-~~~-vs~-----~~g~G-di--------~~L~e~i~~~~~~~~~ 316 (411)
..+. +....+.|+..+ ..|+++..+-.... ..+ .+. ..... +. ..|+|.+.+. +
T Consensus 135 ~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~---d-- 209 (268)
T cd04170 135 KTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAET---D-- 209 (268)
T ss_pred HHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhhC---C--
Confidence 2333 333456654433 34555432211000 000 000 00000 01 2222322222 2
Q ss_pred hHHHHhhhc-CcccHHHHHHHHHHHHccCCh
Q 015221 317 PELLQKLSE-GNFTLRIMYEQFQNILKMGPI 346 (411)
Q Consensus 317 ~~~~~~~~~-~~f~~~d~~~ql~~~~~~g~~ 346 (411)
.+++++... ++++-+++...++.....|.+
T Consensus 210 d~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~ 240 (268)
T cd04170 210 DELMEKYLEGGELTEEELHAGLRRALRAGLL 240 (268)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCE
Confidence 457777666 489999999999988888753
No 135
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.08 E-value=1.7e-09 Score=98.32 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. +.+...+.+ +..+ .+. ....
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~------~~~~~~~~~-t~~~-------------~~~-------------------~~~~ 58 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLK------NDRLAQHQP-TQHP-------------TSE-------------------ELAI 58 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHh------cCCCcccCC-cccc-------------ceE-------------------EEEE
Confidence 458999999999999999998 654432211 0000 000 0011
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
.++.+.++||||...... +. . .....+|.+++|+|++..... ......+.+ .-.+..+|+||+|...
T Consensus 59 ~~~~~~~~D~~G~~~~~~-~~---~--~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 59 GNIKFTTFDLGGHQQARR-LW---K--DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred CCEEEEEEECCCCHHHHH-HH---H--HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 357889999999753221 11 1 122367999999999754211 111111211 1235788999999743
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.. ..-.+....+.+-.....++. .. .......+|++.|.| ++++++.+.+.
T Consensus 133 ~~-~~~~i~~~l~l~~~~~~~~~~--~~-~~~~i~~~Sa~~~~g-~~~~~~wl~~~ 183 (184)
T smart00178 133 AA-SEDELRYALGLTNTTGSKGKV--GV-RPLEVFMCSVVRRMG-YGEGFKWLSQY 183 (184)
T ss_pred CC-CHHHHHHHcCCCccccccccc--CC-ceeEEEEeecccCCC-hHHHHHHHHhh
Confidence 21 111222333321100000000 01 112245689999999 99999998754
No 136
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.08 E-value=1.8e-09 Score=104.51 Aligned_cols=211 Identities=18% Similarity=0.166 Sum_probs=102.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|.+|+||||++++|......- .++.-|+.... ..+. .......++.+.. ....+.+++
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~-~~~g~v~~~~~---~~D~-~~~E~~rgiti~~-------------~~~~~~~~~ 63 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI-HKIGEVHGGGA---TMDF-MEQERERGITIQS-------------AATTCFWKD 63 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC-cccccccCCcc---ccCC-CccccCCCcCeec-------------cEEEEEECC
Confidence 7899999999999999998543211 11211211000 0000 0000111111110 011223457
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC-ChhhHH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA-KGGGAL 260 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~-~~g~~l 260 (411)
+.+.+|||||... +..+... .....|.+++|+|+..|... ..........-.+..+++||+|... .....+
T Consensus 64 ~~i~liDTPG~~d----f~~~~~~--~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~ 137 (270)
T cd01886 64 HRINIIDTPGHVD----FTIEVER--SLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVV 137 (270)
T ss_pred EEEEEEECCCcHH----HHHHHHH--HHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHH
Confidence 8999999999753 2223222 22355899999999876322 2223332222234578999999853 222223
Q ss_pred H-HHHhcCCC-eE---Eecccccc---ccccc-----CC------------cchhhhhhcCCCCHHHHHHHHHhhCCCCC
Q 015221 261 S-AVAATKSP-VI---FIGTGEHM---DEFEV-----FD------------VKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (411)
Q Consensus 261 ~-~~~~~g~P-i~---fi~~Ge~i---~~l~~-----f~------------p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~ 315 (411)
. +....+.+ +. .++.+... -++-. |. |.......... .+.|+|.+.+. +
T Consensus 138 ~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~--r~~l~e~vae~---d- 211 (270)
T cd01886 138 EQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEA--REELIETLAEF---D- 211 (270)
T ss_pred HHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHH--HHHHHHHHhcC---C-
Confidence 2 23333432 11 12222221 12110 10 00000000000 12333333222 2
Q ss_pred chHHHHhhhcC-cccHHHHHHHHHHHHccCC
Q 015221 316 QPELLQKLSEG-NFTLRIMYEQFQNILKMGP 345 (411)
Q Consensus 316 ~~~~~~~~~~~-~f~~~d~~~ql~~~~~~g~ 345 (411)
.+++++...| +++.+++++.|+.-...|.
T Consensus 212 -d~L~e~yl~~~~~~~~el~~~l~~~~~~~~ 241 (270)
T cd01886 212 -DELMEKYLEGEEITEEEIKAAIRKGTIANK 241 (270)
T ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHHcCc
Confidence 4577777765 7999999999999888873
No 137
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.08 E-value=2.2e-09 Score=102.45 Aligned_cols=143 Identities=19% Similarity=0.195 Sum_probs=83.5
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH--------------HHHHH----------HhhhhcC
Q 015221 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--------------FDQLK----------QNATKAK 156 (411)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a--------------~~qL~----------~~~~~~~ 156 (411)
++|++++ ..|+||||++.+||..++++|++|++||+|++.+.. .+.+. ......+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 81 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKN 81 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCC
Confidence 5677775 559999999999999999999999999999863211 11110 0001224
Q ss_pred cceeccCCCCCh----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHH
Q 015221 157 IPFYGSYTESDP----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF 230 (411)
Q Consensus 157 v~~~~~~~~~d~----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~ 230 (411)
+.+.......+. .....+.+..+. +.||+|||||||..... ... ....+|.+++|+.+.... ...
T Consensus 82 l~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~--~~~------~l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 82 LYLLPASQTRDKDAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESG--FRN------AVAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred eEEEeCCCchhhhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHH--HHH------HHHhCCeEEEEcCCCcHHHHHHH
Confidence 443332221110 122344455544 46999999999875321 111 123568899998886431 122
Q ss_pred HHHHHHhcc-CCceEEEEeCCCCC
Q 015221 231 DQAQAFKQS-VSVGAVIVTKMDGH 253 (411)
Q Consensus 231 ~~a~~f~~~-~~~~~vIlnK~D~~ 253 (411)
.....+... ....++|+|+++..
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCch
Confidence 222222211 23468899999853
No 138
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.08 E-value=1.9e-09 Score=100.14 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=40.4
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.++..+.|+||||... +...+ +.....+|.+++|+|++.+.... ........ ..+...+|+||+|...
T Consensus 74 ~~~~~~~liDTpG~~~----~~~~~--~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 74 TPKRKFIIADTPGHEQ----YTRNM--VTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred cCCceEEEEECCcHHH----HHHHH--HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 4577899999999632 22222 12234789999999998763211 11111111 1233456799999854
No 139
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.07 E-value=2.2e-09 Score=105.30 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=38.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
.+++.|.|..||||||++.+||..|+++|+||+++|+|++.+
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~ 47 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKAD 47 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 478999999999999999999999999999999999998553
No 140
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.07 E-value=1.7e-09 Score=94.24 Aligned_cols=106 Identities=25% Similarity=0.248 Sum_probs=72.1
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 104 IMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 104 I~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
|+++ |.+|+||||++..+|.+++.+|+++.++++|++++..
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~-------------------------------------- 43 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL-------------------------------------- 43 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------
Confidence 4444 6779999999999999999999999999999865420
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc--cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ--SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~--~~~~~~vIlnK~D~~~~ 255 (411)
.||++|||||+..... .. .....+|.+++|++++... +.......+.+ .....++|+|+++....
T Consensus 44 ~yd~VIiD~p~~~~~~--~~------~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~ 112 (139)
T cd02038 44 DYDYIIIDTGAGISDN--VL------DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKE 112 (139)
T ss_pred CCCEEEEECCCCCCHH--HH------HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHH
Confidence 1899999999865322 11 1122458999999987431 22222223322 12346899999985433
No 141
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=5.6e-10 Score=115.75 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.-|+|+|.|||||||++++|. +.++.+ +.-|+ +++. |.... +..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls------~akpkI-adypf-----------TTl~--P~lGv----------------v~~ 203 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALS------AAKPKI-ADYPF-----------TTLV--PNLGV----------------VQA 203 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHh------cCCccc-cccCc-----------cccc--ceEEE----------------EEE
Confidence 358999999999999999999 665543 22111 1111 11110 012
Q ss_pred CCCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCcch---hh---HHH----HHHHHhc----------
Q 015221 182 ENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG---QA---AFD----QAQAFKQ---------- 238 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~g---~~---~~~----~a~~f~~---------- 238 (411)
.++.++|+||||...... .+-.+ .+.....++.+++|+|++.. .+ ..+ ....+..
T Consensus 204 ~~~~f~laDtPGliegas~g~gLg~~--fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~ 281 (500)
T PRK12296 204 GDTRFTVADVPGLIPGASEGKGLGLD--FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGD 281 (500)
T ss_pred CCeEEEEEECCCCccccchhhHHHHH--HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhh
Confidence 356789999999853221 11111 12223467999999999641 11 111 1222221
Q ss_pred -cCCceEEEEeCCCCCCChhhHHHH----HHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 239 -SVSVGAVIVTKMDGHAKGGGALSA----VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 239 -~~~~~~vIlnK~D~~~~~g~~l~~----~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.-.+..+|+||+|...... .... +...+. +...+|+..|.| ++.|++.+.+.+
T Consensus 282 l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~------------------~Vf~ISA~tgeG-LdEL~~~L~ell 339 (500)
T PRK12296 282 LAERPRLVVLNKIDVPDARE-LAEFVRPELEARGW------------------PVFEVSAASREG-LRELSFALAELV 339 (500)
T ss_pred hcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCC------------------eEEEEECCCCCC-HHHHHHHHHHHH
Confidence 1245789999999853211 1111 111122 345567777777 777777666555
No 142
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.07 E-value=3.6e-09 Score=108.12 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=37.3
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
.++|+++.. .||||||++.+||.+|+.+|+||++||+||+..
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~ 163 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQAS 163 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 478888854 499999999999999999999999999999753
No 143
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.07 E-value=1.2e-08 Score=101.12 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=90.7
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-------------HHHHH-------------hh
Q 015221 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQ-------------NA 152 (411)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-------------~qL~~-------------~~ 152 (411)
..++|+++|. .|+||||++.+||..++++|++|++||.|++.++.. ..+.. ..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP 171 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC
Confidence 4578999964 599999999999999999999999999999765421 01110 00
Q ss_pred hhcCcceeccCCCC---ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--h
Q 015221 153 TKAKIPFYGSYTES---DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--Q 227 (411)
Q Consensus 153 ~~~~v~~~~~~~~~---d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~ 227 (411)
...++.+....... -........+..+ ...|||||||||+..... .. .....+|.+++|+++... .
T Consensus 172 ~~~~l~vl~~~~~~~~~~~~~~l~~~l~~l-~~~~D~VIID~p~~~~~~--~~------~~L~~AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 172 RRGGLSVLSWGRAVGAALPPAAVRAVLDAA-RRGGDLVVVDLPRRLTPA--AE------TALESADLVLVVVPADVRAVA 242 (322)
T ss_pred CcCCeEEEecCCCCcCCCCHHHHHHHHHHH-HhcCCEEEEeCCCCCCHH--HH------HHHHHCCEEEEEcCCcHHHHH
Confidence 11233333222110 1123334445444 357999999999986322 11 112256899999987642 1
Q ss_pred hHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 228 AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 228 ~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
......+.+....+...+|+|+...... ....+.+..|.|+.
T Consensus 243 ~a~r~l~~l~~~~~~~~lVv~~~~~~~~--~~~~i~~~lg~~v~ 284 (322)
T TIGR03815 243 AAARVCPELGRRNPDLRLVVRGPAPAGL--DPEEIAESLGLPLL 284 (322)
T ss_pred HHHHHHHHHhhhCCCeEEEEeCCCCCCC--CHHHHHHHhCCCce
Confidence 2222233333221224567776432211 22334445565553
No 144
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.07 E-value=5.2e-10 Score=99.61 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=82.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC-CC
Q 015221 106 FVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE-NC 184 (411)
Q Consensus 106 lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~-~~ 184 (411)
++|++||||||++++|+ |.++ .++.-+ ..+.. +.+. ..... ++
T Consensus 1 iiG~~~~GKStll~~l~------~~~~-~~~~~~-----------~~t~~--~~~~----------------~~~~~~~~ 44 (176)
T cd01881 1 LVGLPNVGKSTLLNALT------NAKP-KVANYP-----------FTTLE--PNLG----------------VVEVPDGA 44 (176)
T ss_pred CCCCCCCcHHHHHHHHh------cCCc-cccCCC-----------ceeec--Ccce----------------EEEcCCCC
Confidence 57999999999999999 7654 222200 00000 0000 00112 67
Q ss_pred CEEEEeCCCCCcch---HHHHHHHHHHHHhcCCCeeEEEeeCcchh-----hHHH-------HHHHHhc-------cCCc
Q 015221 185 DLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFD-------QAQAFKQ-------SVSV 242 (411)
Q Consensus 185 d~viIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvda~~g~-----~~~~-------~a~~f~~-------~~~~ 242 (411)
.+.++||||..... ..+...+ ......+|.+++|+|++... ...+ ....... ...+
T Consensus 45 ~~~i~DtpG~~~~~~~~~~~~~~~--~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 45 RIQVADIPGLIEGASEGRGLGNQF--LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred eEEEEeccccchhhhcCCCccHHH--HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 88999999974211 1111111 12233579999999997542 1111 1111111 1235
Q ss_pred eEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 243 ~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..+|+||+|............. ........+...+|+..|.| ++.+++.+...
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~--------------~~~~~~~~~~~~~Sa~~~~g-l~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVR--------------ELALEEGAEVVPISAKTEEG-LDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHH--------------HHhcCCCCCEEEEehhhhcC-HHHHHHHHHhh
Confidence 6888999998654321111000 01111233456789999999 99999887654
No 145
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.06 E-value=3.4e-09 Score=96.62 Aligned_cols=159 Identities=21% Similarity=0.181 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
...|+++|.+||||||++++|+ +.+ +.-++.. ++ .+ ..+.++.
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~------~~~~~~~~~~~---~~--------~t-~~~~~~~------------------ 67 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALT------NRKNLARTSKT---PG--------RT-QLINFFE------------------ 67 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHh------CCCCcccccCC---CC--------ce-eEEEEEe------------------
Confidence 3569999999999999999999 543 3222220 00 00 1111111
Q ss_pred hcCCCCEEEEeCCCCCcc--h----HHHHHHHHHH-HHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCC
Q 015221 180 KKENCDLIIVDTSGRHKQ--E----AALFEEMRQV-SEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~--~----~~l~~el~~i-~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~ 250 (411)
.+.++.|+||||.... . ......+... ......+.+++|+|++.+.... .....+...-.+..+++||+
T Consensus 68 --~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~ 145 (196)
T PRK00454 68 --VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKA 145 (196)
T ss_pred --cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECc
Confidence 1367899999996321 1 1111111111 1112345678888876543222 22233332222357889999
Q ss_pred CCCCChhhH--HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 251 DGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 251 D~~~~~g~~--l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
|....+... ..... +.+... ..+..++|++.|.| ++.+++.+.+.+.
T Consensus 146 Dl~~~~~~~~~~~~i~------------~~l~~~--~~~~~~~Sa~~~~g-i~~l~~~i~~~~~ 194 (196)
T PRK00454 146 DKLKKGERKKQLKKVR------------KALKFG--DDEVILFSSLKKQG-IDELRAAIAKWLA 194 (196)
T ss_pred ccCCHHHHHHHHHHHH------------HHHHhc--CCceEEEEcCCCCC-HHHHHHHHHHHhc
Confidence 986432111 11111 000000 23445789999999 9999999988764
No 146
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.06 E-value=1.4e-09 Score=96.31 Aligned_cols=111 Identities=15% Similarity=0.038 Sum_probs=60.9
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
+++.+.++||||...... ... .....++.+++|+|++....... ....+.. .-.+..+|+||+|...
T Consensus 48 ~~~~~~l~Dt~G~~~~~~----~~~--~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 48 GNARLKFWDLGGQESLRS----LWD--KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred CCEEEEEEECCCChhhHH----HHH--HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 367889999999753221 111 12346799999999975432211 1121111 1135688999999744
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.... -......... ...+. ...+...+|++.|.| ++++++++.+
T Consensus 122 ~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~ 166 (167)
T cd04160 122 ALSV-EEIKEVFQDK---------AEEIGRRDCLVLPVSALEGTG-VREGIEWLVE 166 (167)
T ss_pred CCCH-HHHHHHhccc---------cccccCCceEEEEeeCCCCcC-HHHHHHHHhc
Confidence 3211 1111111100 00111 112456689999999 9999988754
No 147
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.06 E-value=2.4e-09 Score=94.13 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=81.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|++||||||+++++. +.+.. .. .|. .+..+..... ..+
T Consensus 2 i~i~G~~~~GKTsl~~~~~------~~~~~--~~---~~t-----------~~~~~~~~~~----------------~~~ 43 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLK------HAELV--TT---IPT-----------VGFNVEMLQL----------------EKH 43 (160)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCcc--cc---cCc-----------cCcceEEEEe----------------CCc
Confidence 7899999999999999998 54431 11 010 0111100000 124
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHH-Hhc---cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA-FKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~-f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.+.||||....... .. .....+|.+++|+|++....... .... +.. .-.+..+|+||+|.....
T Consensus 44 ~~l~i~D~~G~~~~~~~----~~--~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 117 (160)
T cd04156 44 LSLTVWDVGGQEKMRTV----WK--CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL 117 (160)
T ss_pred eEEEEEECCCCHhHHHH----HH--HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc
Confidence 67899999997432211 11 11236799999999986532111 1111 111 123568899999984321
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
. ...+....+. +.... ....+...+|++.|.| ++++++++.+
T Consensus 118 ~-~~~i~~~~~~--------~~~~~-~~~~~~~~~Sa~~~~g-v~~~~~~i~~ 159 (160)
T cd04156 118 T-AEEITRRFKL--------KKYCS-DRDWYVQPCSAVTGEG-LAEAFRKLAS 159 (160)
T ss_pred C-HHHHHHHcCC--------cccCC-CCcEEEEecccccCCC-hHHHHHHHhc
Confidence 1 1111111110 11100 0111345589999999 9999998753
No 148
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.06 E-value=1.5e-09 Score=97.33 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|. +..+.- +.+ ..+..+.. ...
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~------~~~~~~-----~~~-----------t~g~~~~~-----------------~~~ 55 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLL------GEDIDT-----ISP-----------TLGFQIKT-----------------LEY 55 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHc------cCCCCC-----cCC-----------ccccceEE-----------------EEE
Confidence 568999999999999999998 542211 111 01111000 011
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHH-hc---cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAF-KQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f-~~---~~~~~~vIlnK~D~~~ 254 (411)
+++.+.++||||...... + .. .....+|.+++|+|++....... ..... .. .-.+..+|+||+|...
T Consensus 56 ~~~~l~l~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 56 EGYKLNIWDVGGQKTLRP-Y---WR--NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred CCEEEEEEECCCCHHHHH-H---HH--HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 257789999999743211 1 11 11236799999999986522111 11111 11 1235688999999854
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
.. ..-......+. .++. ....+...+|+..|.| ++++++++.
T Consensus 130 ~~-~~~~~~~~~~~--------~~~~--~~~~~~~~~Sa~~g~g-i~~l~~~l~ 171 (173)
T cd04154 130 AL-SEEEIREALEL--------DKIS--SHHWRIQPCSAVTGEG-LLQGIDWLV 171 (173)
T ss_pred CC-CHHHHHHHhCc--------cccC--CCceEEEeccCCCCcC-HHHHHHHHh
Confidence 31 11111111100 0000 1122456689999999 999998874
No 149
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.06 E-value=2.4e-09 Score=117.78 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHH---------------------hhhhcC
Q 015221 99 GKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ---------------------NATKAK 156 (411)
Q Consensus 99 ~~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~---------------------~~~~~~ 156 (411)
.++++|+|++.. |+||||++.+||..+++.|++|++||+|+++|.....+.. .....+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 456788888554 9999999999999999999999999999998765433211 011234
Q ss_pred cceeccCC-CCChHHH-----HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc-hh-h
Q 015221 157 IPFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQ-A 228 (411)
Q Consensus 157 v~~~~~~~-~~d~~~i-----~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g~-~ 228 (411)
+.+...+. ..+|.+. ....+..++ +.||+||||||+.....+.. .+. ..+|.+++|+.+.. .. .
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~-----~l~--~~~D~vl~v~~~~~~~~~~ 695 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMR-----AAA--RLAIIMLLVTAYDRVVVEC 695 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHH-----Hhh--hhCCeEEEEEEeCceeHHH
Confidence 44444332 2233333 233344443 57999999999987533211 111 14588888887642 22 2
Q ss_pred HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 229 AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 229 ~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
..+....+.. ..++.|+|+|++|...
T Consensus 696 ~~~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 696 GRADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHHHhcCCceEEEEecCCChhh
Confidence 2222333322 2356799999999643
No 150
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.06 E-value=2.3e-09 Score=108.78 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=38.3
Q ss_pred CCCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEecc-CcCcc
Q 015221 99 GKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRA 142 (411)
Q Consensus 99 ~~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~-D~~r~ 142 (411)
.++.+|+++... ||||||++.+||.+|+.+|+||++||+ ||+..
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~n 149 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGT 149 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCC
Confidence 346788888555 999999999999999999999999996 98654
No 151
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.05 E-value=2.2e-09 Score=98.12 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCChhh-
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGGG- 258 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~~g~- 258 (411)
.++.+.++||||.. .+.... +.....+|.+++|+|++.+... .+........-.+..+|+||+|.......
T Consensus 66 ~~~~~~i~DtpG~~----~~~~~~--~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~ 139 (192)
T cd01889 66 ENLQITLVDCPGHA----SLIRTI--IGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERE 139 (192)
T ss_pred cCceEEEEECCCcH----HHHHHH--HHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHH
Confidence 36889999999973 222222 1222357899999999865321 11111111111245789999998643211
Q ss_pred -HHHHHH-hcCCCeEEeccccccccc-ccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 259 -ALSAVA-ATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 259 -~l~~~~-~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
...... ..+ +.+.+. ....+..++|++.|.| +++|.+.+.+.++
T Consensus 140 ~~~~~~~~~l~---------~~~~~~~~~~~~vi~iSa~~g~g-i~~L~~~l~~~~~ 186 (192)
T cd01889 140 RKIEKMKKKLQ---------KTLEKTRFKNSPIIPVSAKPGGG-EAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHH---------HHHHhcCcCCCCEEEEeccCCCC-HHHHHHHHHhccc
Confidence 111111 000 001000 1124567799999999 9999999988774
No 152
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.05 E-value=7.2e-09 Score=98.11 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=88.7
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcC-------------cchHH--------HHHHHhhhhcCcce
Q 015221 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTF-------------RAGAF--------DQLKQNATKAKIPF 159 (411)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~-------------r~~a~--------~qL~~~~~~~~v~~ 159 (411)
++|+|+|+. |+||||++++||..|++.|++|.+||.||. +.|-. .+-..+....|+.|
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 579999999 999999999999999999999999999971 11111 11111223346655
Q ss_pred eccCCCCCh-----------HHHHHHHHHHHh-cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh
Q 015221 160 YGSYTESDP-----------VRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ 227 (411)
Q Consensus 160 ~~~~~~~d~-----------~~i~~~~l~~~~-~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~ 227 (411)
.+-+..... ..-..+.+..+. ...+++||+|||...... .+... ..+|.++.|+-+-...
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~------~~~al--~~aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPY------TRQAL--AAADLVLVVVNPDAAS 153 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHH------HHHHH--HhCCeEEEEeCCCHHH
Confidence 442221111 111234455555 467999999998864321 11111 2458888888775431
Q ss_pred hHHHHHHHHhccCCceEEEEeCCCCCCChhhH
Q 015221 228 AAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 228 ~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~ 259 (411)
-..-..+.+.. -..+|+|+.|..++-+..
T Consensus 154 ~~~L~q~~l~~---~~~~liNq~~~~s~l~~D 182 (243)
T PF06564_consen 154 HARLHQRALPA---GHRFLINQYDPASQLQRD 182 (243)
T ss_pred HHHHHHhcccC---CcEEEEeccCccchHHHH
Confidence 11101111111 258899999987765433
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.04 E-value=1.2e-09 Score=108.55 Aligned_cols=154 Identities=17% Similarity=0.265 Sum_probs=86.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
-|+|+|.|||||||++++|. +.++. |+.-+| ++. .|..... ...
T Consensus 159 dV~lvG~pnaGKSTLl~~lt------~~~~~-va~y~f-----------TT~--~p~ig~v----------------~~~ 202 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVS------AAKPK-IADYPF-----------TTL--VPNLGVV----------------RVD 202 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHh------cCCcc-ccCCCC-----------Ccc--CCEEEEE----------------EeC
Confidence 48999999999999999998 55443 333111 111 1111100 011
Q ss_pred -CCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCcch-----hhHHH----HHHHHhcc--CCceEEEE
Q 015221 183 -NCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSSIG-----QAAFD----QAQAFKQS--VSVGAVIV 247 (411)
Q Consensus 183 -~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~g-----~~~~~----~a~~f~~~--~~~~~vIl 247 (411)
...+.|+||||...... .+.... +.....++.+++|+|++.. .+... ....+... -.+..+|+
T Consensus 203 ~~~~~~i~D~PGli~~a~~~~gLg~~f--lrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~ 280 (329)
T TIGR02729 203 DGRSFVIADIPGLIEGASEGAGLGHRF--LKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVL 280 (329)
T ss_pred CceEEEEEeCCCcccCCcccccHHHHH--HHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEE
Confidence 36789999999853221 121111 1222356899999998743 11111 12222211 23568899
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEeccccccc-ccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|..... ....... .+. .+ -.+..++|++.|.| +++|++.+.+.+
T Consensus 281 NK~DL~~~~-~~~~~~~-------------~l~~~~--~~~vi~iSAktg~G-I~eL~~~I~~~l 328 (329)
T TIGR02729 281 NKIDLLDEE-ELAELLK-------------ELKKAL--GKPVFPISALTGEG-LDELLYALAELL 328 (329)
T ss_pred eCccCCChH-HHHHHHH-------------HHHHHc--CCcEEEEEccCCcC-HHHHHHHHHHHh
Confidence 999985442 1111111 110 11 12456789999999 999999987764
No 154
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.04 E-value=6.5e-09 Score=105.62 Aligned_cols=45 Identities=27% Similarity=0.186 Sum_probs=38.9
Q ss_pred CCCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEecc-CcCcch
Q 015221 99 GKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAG 143 (411)
Q Consensus 99 ~~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~-D~~r~~ 143 (411)
.++++|++++.. ||||||++.+||..|+.+|+||++||+ ||+...
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 356788888555 999999999999999999999999996 997643
No 155
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.04 E-value=2.9e-09 Score=88.48 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=56.6
Q ss_pred EEEEc-CCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 104 IMFVG-LQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 104 I~lvG-~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
|+++| ..|+||||++.+||..+++. |++|+++|+|+++..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 56664 45999999999999999997 999999999988542
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 226 (411)
|++||||||...... ..+. ..+|.+++|+++...
T Consensus 44 ---D~IIiDtpp~~~~~~------~~~l--~~aD~vlvvv~~~~~ 77 (106)
T cd03111 44 ---DYVVVDLGRSLDEVS------LAAL--DQADRVFLVTQQDLP 77 (106)
T ss_pred ---CEEEEeCCCCcCHHH------HHHH--HHcCeEEEEecCChH
Confidence 789999998763321 1111 245899999988643
No 156
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.03 E-value=3.1e-09 Score=94.81 Aligned_cols=151 Identities=18% Similarity=0.127 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||+++.+. |........ ..+..+.. ..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~------~~~~~~~~~----------------t~g~~~~~-----------------i~ 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLA------SEDISHITP----------------TQGFNIKT-----------------VQ 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHh------cCCCcccCC----------------CCCcceEE-----------------EE
Confidence 4569999999999999999998 543221111 01111000 01
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh----ccCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK----QSVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~----~~~~~~~vIlnK~D~~ 253 (411)
..+.++.++||||...... .... ....++.+++|+|++..... ......+. ....+..+++||+|..
T Consensus 55 ~~~~~~~~~D~~G~~~~~~----~~~~--~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 55 SDGFKLNVWDIGGQRAIRP----YWRN--YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred ECCEEEEEEECCCCHHHHH----HHHH--HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 2357889999999742211 1111 12367889999999753211 11111111 1113457789999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.... ...+....+. .++. ...+...+|+..|.| ++.+++++.+
T Consensus 129 ~~~~-~~~i~~~l~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~~~~~l~~ 172 (173)
T cd04155 129 TAAP-AEEIAEALNL-----------HDLRDRTWHIQACSAKTGEG-LQEGMNWVCK 172 (173)
T ss_pred cCCC-HHHHHHHcCC-----------cccCCCeEEEEEeECCCCCC-HHHHHHHHhc
Confidence 4321 1122222221 1111 111234689999999 9999998754
No 157
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.03 E-value=3.6e-09 Score=91.76 Aligned_cols=149 Identities=17% Similarity=0.092 Sum_probs=81.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|++||||||+++.|. +.+.. .+ +.| ..+..+.. ....+
T Consensus 2 i~i~G~~~~GKssl~~~l~------~~~~~---~~-~~~-----------t~~~~~~~-----------------~~~~~ 43 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIA------GGQFS---ED-TIP-----------TVGFNMRK-----------------VTKGN 43 (159)
T ss_pred EEEEcCCCCCHHHHHHHHc------cCCCC---cC-ccC-----------CCCcceEE-----------------EEECC
Confidence 7899999999999999998 54321 10 000 01111110 00124
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~~~~ 256 (411)
..+.++||||...... .... ....+|.+++|+|++...... .....+.. .-.+..+|+||+|.....
T Consensus 44 ~~~~~~D~~g~~~~~~----~~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 44 VTLKVWDLGGQPRFRS----MWER--YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred EEEEEEECCCCHhHHH----HHHH--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 6688999999642211 1111 123678999999997542211 11122111 112457889999975432
Q ss_pred hhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.........+. .... ...+...+|+..|.| ++.+++.+.+
T Consensus 118 -~~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 158 (159)
T cd04159 118 -SVDELIEQMNL-----------KSITDREVSCYSISCKEKTN-IDIVLDWLIK 158 (159)
T ss_pred -CHHHHHHHhCc-----------ccccCCceEEEEEEeccCCC-hHHHHHHHhh
Confidence 11112221111 1111 112345689999999 9999998764
No 158
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.02 E-value=3.4e-09 Score=87.11 Aligned_cols=72 Identities=29% Similarity=0.302 Sum_probs=56.7
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+|++.|. .|+||||++.+||.+++++|.+++++++|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 3677774 4999999999999999999999999999865
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 225 (411)
||++||||||...... . .+. ..+|.++++++++.
T Consensus 40 --~d~viiD~p~~~~~~~--~----~~l--~~ad~viv~~~~~~ 73 (104)
T cd02042 40 --YDYIIIDTPPSLGLLT--R----NAL--AAADLVLIPVQPSP 73 (104)
T ss_pred --CCEEEEeCcCCCCHHH--H----HHH--HHCCEEEEeccCCH
Confidence 7899999999764321 1 111 24589999998864
No 159
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.01 E-value=4.3e-09 Score=97.40 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch---hhHHHHHHHHh-ccCCceEEEEeCCCCCCChh--
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFK-QSVSVGAVIVTKMDGHAKGG-- 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~a~~f~-~~~~~~~vIlnK~D~~~~~g-- 257 (411)
+.+.|+||||.. .+...+ +.....+|.+++|+|++.+ .........+. ...++..+|+||+|......
T Consensus 83 ~~i~~iDtPG~~----~~~~~~--~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 83 RHVSFVDCPGHE----ILMATM--LSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cEEEEEECCChH----HHHHHH--HHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHH
Confidence 678999999952 333332 2233467999999999853 12223222222 22334577999999864321
Q ss_pred hHHHHHHhcCCCeEEeccccccccc-ccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
..+.... +.+... ....+..++|++.|.| ++.|++.+.+.+++
T Consensus 157 ~~~~~i~------------~~~~~~~~~~~~i~~vSA~~g~g-i~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIK------------KFVKGTIAENAPIIPISAQLKYN-IDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHH------------HHHhccccCCCcEEEEeCCCCCC-HHHHHHHHHHhCCC
Confidence 1111111 001100 1134567789999999 99999999988754
No 160
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.01 E-value=2.1e-09 Score=95.34 Aligned_cols=103 Identities=15% Similarity=0.009 Sum_probs=58.8
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHH---HHhccCCceEEEEeCCCCCCChh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQ---AFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~---~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
+.+.|+||||... + ..+. ......+|.+++|+|++..... ..... .+...-.+..+|.||+|......
T Consensus 52 ~~l~i~D~~G~~~----~-~~~~-~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~ 125 (165)
T cd01864 52 VKLQIWDTAGQER----F-RTIT-QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQRE 125 (165)
T ss_pred EEEEEEECCChHH----H-HHHH-HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccc
Confidence 5789999999531 1 1111 1112367999999999865321 11222 22111234678999999854311
Q ss_pred ----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 258 ----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 258 ----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.+...... ....+...+|+..|.| ++++++.+.+.
T Consensus 126 ~~~~~~~~~~~~-----------------~~~~~~~e~Sa~~~~~-v~~~~~~l~~~ 164 (165)
T cd01864 126 VLFEEACTLAEK-----------------NGMLAVLETSAKESQN-VEEAFLLMATE 164 (165)
T ss_pred cCHHHHHHHHHH-----------------cCCcEEEEEECCCCCC-HHHHHHHHHHh
Confidence 11111111 1112345689999999 99999988754
No 161
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.01 E-value=4.8e-09 Score=92.17 Aligned_cols=148 Identities=21% Similarity=0.159 Sum_probs=80.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCC--ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWK--PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~k--v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
|+++|++||||||++++|. +.+ ..-+.. ..+..+.. ...
T Consensus 2 i~~vG~~~~GKTsl~~~l~------~~~~~~~~~~~----------------t~g~~~~~-----------------~~~ 42 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLK------PENAQSQIIVP----------------TVGFNVES-----------------FEK 42 (162)
T ss_pred EEEECCCCCCHHHHHHHHc------ccCCCcceecC----------------ccccceEE-----------------EEE
Confidence 7899999999999999998 422 111111 00111000 012
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh------ccCCceEEEEeCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK------QSVSVGAVIVTKMDG 252 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~------~~~~~~~vIlnK~D~ 252 (411)
.++.+.++||||...... +.. .....+|.+++|+|++..... ......+. ..-.+..+|+||+|.
T Consensus 43 ~~~~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 43 GNLSFTAFDMSGQGKYRG-----LWE-HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred CCEEEEEEECCCCHhhHH-----HHH-HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 356789999999753221 111 112367999999999865321 11112221 112356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
..... ........+. ..+.. ..+...+|++.|.| ++++++++.+
T Consensus 117 ~~~~~-~~~~~~~l~~-----------~~~~~~~~~~~~~Sa~~g~g-v~~~~~~l~~ 161 (162)
T cd04157 117 PDALT-AVKITQLLGL-----------ENIKDKPWHIFASNALTGEG-LDEGVQWLQA 161 (162)
T ss_pred cCCCC-HHHHHHHhCC-----------ccccCceEEEEEeeCCCCCc-hHHHHHHHhc
Confidence 54311 1111111111 11110 01234589999999 9999998754
No 162
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.00 E-value=5.9e-09 Score=100.78 Aligned_cols=216 Identities=18% Similarity=0.155 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-HHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-FDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+.|+++|.+|+|||||+++|......- .+..-|..-.....+ .+. .......++.+... ...+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i-~~~g~v~~~~~~~~t~~D~-~~~e~~rg~si~~~-------------~~~~~ 67 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHATSDW-MEIEKQRGISVTSS-------------VMQFE 67 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCc-ccCceecccccCCCccCCC-cHHHHhCCCCeEEE-------------EEEEe
Confidence 569999999999999999998442110 011111100000000 000 00001111111110 01223
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCCh-h
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKG-G 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~~-g 257 (411)
.+++.+.++||||...... +... ....+|.+++|+|++.+.... .........-.+..+++||+|..... .
T Consensus 68 ~~~~~i~liDTPG~~df~~----~~~~--~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~ 141 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSE----DTYR--TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPL 141 (267)
T ss_pred eCCEEEEEEECCCchHHHH----HHHH--HHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHH
Confidence 4578999999999753222 2211 123569999999998763211 12222222223467889999975432 2
Q ss_pred hHH-HHHHhcCCCeEEe----ccccccc---ccccCCcchhhhhhcCC-----CC-HHHHHHHHHhhCCCCCchHHHHhh
Q 015221 258 GAL-SAVAATKSPVIFI----GTGEHMD---EFEVFDVKPFVSRLLGM-----GD-WSGFMDKIHEVVPMDQQPELLQKL 323 (411)
Q Consensus 258 ~~l-~~~~~~g~Pi~fi----~~Ge~i~---~l~~f~p~~~vs~~~g~-----Gd-i~~L~e~i~~~~~~~~~~~~~~~~ 323 (411)
..+ .+....+.|+..+ +.|+... |+-......+.. -.|. .+ ..++.|.+.+. + .+++++.
T Consensus 142 ~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~-~~~~~~~~~~~~p~~~~e~~~e~---~--~~l~e~~ 215 (267)
T cd04169 142 ELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDR-GAGGATIAPEETKGLDDPKLDEL---G--GDLAEQL 215 (267)
T ss_pred HHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecC-CCCCccceeccCCcccHHHHHhc---C--HHHHHHH
Confidence 223 3334456554333 2333321 221100000100 0010 00 12333444443 1 4577777
Q ss_pred hcC-cccHHHHHHHHHHHHccC
Q 015221 324 SEG-NFTLRIMYEQFQNILKMG 344 (411)
Q Consensus 324 ~~~-~f~~~d~~~ql~~~~~~g 344 (411)
..+ +++.+++.+.++.-..-|
T Consensus 216 ~e~~~~~~~~~~~~~~~~~~~~ 237 (267)
T cd04169 216 REELELLEGAGPEFDQEAFLAG 237 (267)
T ss_pred hCCCccchhhhHHHhHHHHHcC
Confidence 766 688888777777766555
No 163
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.00 E-value=2.1e-09 Score=103.38 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++|+++|..||||||++.+||..|+++| +|+++|+||+..
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~ 42 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD 42 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence 5788889999999999999999999999 999999998753
No 164
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.00 E-value=4.9e-09 Score=95.24 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||+++++. +.+... +-|. .+... . ...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~------~~~~~~-----~~~T-----------~~~~~-~----------------~i~ 59 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLK------DDRLAQ-----HVPT-----------LHPTS-E----------------ELT 59 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHh------cCCCcc-----cCCc-----------cCcce-E----------------EEE
Confidence 3558999999999999999998 543211 1000 00000 0 011
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
..+.++.++||||..... .+. ......++.+++|+|++.... .......+.. .-.+..++.||+|..
T Consensus 60 ~~~~~~~l~D~~G~~~~~-----~~~-~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 60 IGNIKFKTFDLGGHEQAR-----RLW-KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred ECCEEEEEEECCCCHHHH-----HHH-HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 125678999999964221 111 112236789999999975321 1112222111 113567889999974
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
... ..-......+.+-...+-+....+.. ...+...+|+..|.| ++++++.+.+.
T Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g-v~e~~~~l~~~ 189 (190)
T cd00879 134 GAV-SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQG-YGEAFRWLSQY 189 (190)
T ss_pred CCc-CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCC-hHHHHHHHHhh
Confidence 321 11112222221110000001110111 111345689999999 99999998765
No 165
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.99 E-value=6.1e-09 Score=99.82 Aligned_cols=42 Identities=29% Similarity=0.276 Sum_probs=37.2
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHH-HcCCCceEeccCcCcc
Q 015221 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRA 142 (411)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r~ 142 (411)
+.+|++++.. ||||||++.+||.+|+ ..|+||++||.||++.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 4678888877 9999999999999999 5569999999999754
No 166
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.99 E-value=5.5e-09 Score=106.23 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=37.7
Q ss_pred CCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 100 ~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++++|++++.. ||||||++.+||..|+..|++|++||+|++..
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 45788887544 99999999999999999999999999999753
No 167
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.99 E-value=2.4e-09 Score=97.22 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC---ChHHHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES---DPVRIAVEGVETF 179 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~---d~~~i~~~~l~~~ 179 (411)
++.+.|..||||||++++|.. ...+|.+++++-+|.-..+--.++.. ..++++.....+- ....-....+..+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~---~~~~~v~~l~~gcicc~~~~~~~~~l~~l 77 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQ---EDGVPVVELNNGCICCTLRDDLVEALRRL 77 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHH---TTT-EEEEECTTTESS-TTS-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhc---ccceEEEEecCCCcccccHHHHHHHHHHH
Confidence 688999999999999999998 66679999999998766554333322 2233333221110 0001122334444
Q ss_pred hc-C--CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC-CceEEEEeCCCCCCC
Q 015221 180 KK-E--NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~-~--~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~-~~~~vIlnK~D~~~~ 255 (411)
.. . ++|++||.|.|......- +-.-..+......+.++.|+|+.......+....+.+.+ .-+.+|+||+|....
T Consensus 78 ~~~~~~~~d~IiIE~sG~a~p~~l-~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 78 LREYEERPDRIIIETSGLADPAPL-ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKIDLVSD 156 (178)
T ss_dssp CCCCHGC-SEEEEEEECSSGGGGH-HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH
T ss_pred HHhcCCCcCEEEECCccccccchh-hhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccccCCh
Confidence 32 3 589999999997655433 111233445567789999999954322111112222222 226899999998654
No 168
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.99 E-value=7.2e-09 Score=93.20 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|. +.+.. ... |. .+..+. ....
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~------~~~~~--~~~---~t-----------~~~~~~-----------------~~~~ 56 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFL------LGEVV--HTS---PT-----------IGSNVE-----------------EIVY 56 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHc------cCCCC--CcC---Cc-----------cccceE-----------------EEEE
Confidence 468999999999999999997 32211 110 00 000000 0112
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHh-c---cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK-Q---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~-~---~~~~~~vIlnK~D~~~ 254 (411)
++..+.++||||...... ... .....+|.+++|+|++...... .....+. . ...+..+|+||+|...
T Consensus 57 ~~~~~~l~D~~G~~~~~~----~~~--~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 57 KNIRFLMWDIGGQESLRS----SWN--TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CCeEEEEEECCCCHHHHH----HHH--HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 356789999999743211 111 1123679999999998653211 1122221 1 1135688999999854
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
... .-......+. +...+. ..+...+|+..|.| ++++++.+..
T Consensus 131 ~~~-~~~i~~~l~~--------~~~~~~--~~~~~~~SA~~g~g-i~e~~~~l~~ 173 (174)
T cd04153 131 AMT-PAEISESLGL--------TSIRDH--TWHIQGCCALTGEG-LPEGLDWIAS 173 (174)
T ss_pred CCC-HHHHHHHhCc--------ccccCC--ceEEEecccCCCCC-HHHHHHHHhc
Confidence 311 1111121111 001111 11345689999999 9999988753
No 169
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.98 E-value=1e-08 Score=89.78 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=60.0
Q ss_pred CEEEEeCCCCCcc------hHHHHHHHHHHHHh-cCCCeeEEEeeCcchh-h-HHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 185 DLIIVDTSGRHKQ------EAALFEEMRQVSEA-TNPDLVIFVMDSSIGQ-A-AFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 185 d~viIDTaG~~~~------~~~l~~el~~i~~~-~~~d~vllVvda~~g~-~-~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
.+.++||||.... .......+...... ...+.+++|+|..... . .......+.....+..+|+||+|....
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK 125 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 7899999997542 11111111121221 1346788898886542 1 122233333322345788999998543
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ......... ..+.......+..++|++.|.| +.++++.+.+++
T Consensus 126 ~~-~~~~~~~~~---------~~l~~~~~~~~~~~~Sa~~~~~-~~~l~~~l~~~~ 170 (170)
T cd01876 126 SE-LAKALKEIK---------KELKLFEIDPPIILFSSLKGQG-IDELRALIEKWL 170 (170)
T ss_pred HH-HHHHHHHHH---------HHHHhccCCCceEEEecCCCCC-HHHHHHHHHHhC
Confidence 21 111110000 0111011223445789999999 999999887753
No 170
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.97 E-value=1.1e-08 Score=91.60 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=83.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|.+||||||+++++. +... .. +.|. .+..+.. ....+
T Consensus 2 vvlvG~~~~GKTsl~~~l~------~~~~--~~---~~~T-----------~~~~~~~-----------------~~~~~ 42 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLK------QDEF--MQ---PIPT-----------IGFNVET-----------------VEYKN 42 (169)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCC--CC---cCCc-----------CceeEEE-----------------EEECC
Confidence 7899999999999999998 4211 01 1110 1111100 01235
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc----CCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~----~~~~~vIlnK~D~~~~~ 256 (411)
+.+.++||||........ ......+|.+++|+|++..... ......+... -.+..+|.||+|+..+.
T Consensus 43 ~~i~l~Dt~G~~~~~~~~------~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 116 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLW------KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 116 (169)
T ss_pred EEEEEEECCCChhcchHH------HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC
Confidence 788999999975322111 0112367999999999764221 1112222111 13567889999985431
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCC--cchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFD--VKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~--p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
.. ........ ...+.... +...+|++.|.| ++++++++.+.+.+.
T Consensus 117 ~~-~~~~~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-v~~~f~~l~~~~~~~ 163 (169)
T cd04158 117 SV-EEMTELLS-----------LHKLCCGRSWYIQGCDARSGMG-LYEGLDWLSRQLVAA 163 (169)
T ss_pred CH-HHHHHHhC-----------CccccCCCcEEEEeCcCCCCCC-HHHHHHHHHHHHhhc
Confidence 11 11111000 00110011 123479999999 999999998766443
No 171
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.97 E-value=4.4e-09 Score=100.56 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+..|+++|.+||||||++|.|. |.++..++. +.+. +.. +..+. ..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLl------g~~~~~v~~--~~~~---------T~~-~~~~~-----------------~~ 75 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIF------GERKAATSA--FQSE---------TLR-VREVS-----------------GT 75 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHh------CCCCcccCC--CCCc---------eEE-EEEEE-----------------EE
Confidence 4679999999999999999999 877765543 2111 100 10000 01
Q ss_pred cCCCCEEEEeCCCCCcch------HHHHHHHHHHHHhcCCCeeEEEeeCcch---hhHHHHHHHHhccC-----CceEEE
Q 015221 181 KENCDLIIVDTSGRHKQE------AALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSV-----SVGAVI 246 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~------~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~a~~f~~~~-----~~~~vI 246 (411)
.+++.+.+|||||..... ...+..+........++.+++|...... ......++.+.+.. ....+|
T Consensus 76 ~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV 155 (249)
T cd01853 76 VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVV 155 (249)
T ss_pred ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEE
Confidence 236789999999987552 1222223222223357888888644321 22222333332211 246889
Q ss_pred EeCCCCCCCh
Q 015221 247 VTKMDGHAKG 256 (411)
Q Consensus 247 lnK~D~~~~~ 256 (411)
+||+|.....
T Consensus 156 ~T~~d~~~p~ 165 (249)
T cd01853 156 LTHAASSPPD 165 (249)
T ss_pred EeCCccCCCC
Confidence 9999986543
No 172
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.97 E-value=4.7e-09 Score=92.46 Aligned_cols=154 Identities=12% Similarity=0.011 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. +... ++ .+.+... ..+..... ...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~------~~~~--~~--~~~~t~~-----------~~~~~~~~--------------~~~ 47 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFI------QSYF--VT--DYDPTIE-----------DSYTKQCE--------------IDG 47 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHH------hCCC--Cc--ccCCCcc-----------ceEEEEEE--------------ECC
Confidence 469999999999999999998 3321 11 1111000 00000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHh---c-cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---Q-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~---~-~~~~~~vIlnK~D~~~ 254 (411)
..+.+.++||||...... +. .. ....+|.+++|+|++....... ....+. . .-.+..+|.||+|...
T Consensus 48 ~~~~~~i~Dt~G~~~~~~-~~---~~--~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 48 QWAILDILDTAGQEEFSA-MR---EQ--YMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEEEEEECCCCcchhH-HH---HH--HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 135678899999653321 11 11 1225689999999976432111 111111 1 1124678899999854
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+.......... ....+ . .+...+|+..|.| ++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~------------~~~~~-~-~~~~~~Sa~~~~~-i~~l~~~l~~~~ 163 (164)
T cd04145 122 QRKVSREEGQE------------LARKL-K-IPYIETSAKDRLN-VDKAFHDLVRVI 163 (164)
T ss_pred cceecHHHHHH------------HHHHc-C-CcEEEeeCCCCCC-HHHHHHHHHHhh
Confidence 32111111100 00011 1 2345689999999 999999887653
No 173
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.97 E-value=9.4e-09 Score=90.25 Aligned_cols=149 Identities=19% Similarity=0.133 Sum_probs=83.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|.+||||||+++++. +.+.. .+.+. .+..+. .+...+
T Consensus 2 i~iiG~~~~GKssli~~~~------~~~~~-----~~~~t-----------~~~~~~-----------------~~~~~~ 42 (158)
T cd00878 2 ILILGLDGAGKTTILYKLK------LGEVV-----TTIPT-----------IGFNVE-----------------TVEYKN 42 (158)
T ss_pred EEEEcCCCCCHHHHHHHHh------cCCCC-----CCCCC-----------cCcceE-----------------EEEECC
Confidence 7899999999999999999 55411 11110 011100 011125
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~~~~ 256 (411)
+++.++||||...... .. . .....+|.+++|+|++.+.... .....+.. ...+..+|.||+|.....
T Consensus 43 ~~~~i~D~~G~~~~~~-~~---~--~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 43 VSFTVWDVGGQDKIRP-LW---K--HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred EEEEEEECCCChhhHH-HH---H--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 7899999999753321 11 1 1123569999999998653211 11121111 123567889999986532
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.........+.+. ......+...+|+..|.| ++.+++.+.+
T Consensus 117 -~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~~g-v~~~~~~l~~ 157 (158)
T cd00878 117 -SVSELIEKLGLEK----------ILGRRWHIQPCSAVTGDG-LDEGLDWLLQ 157 (158)
T ss_pred -CHHHHHHhhChhh----------ccCCcEEEEEeeCCCCCC-HHHHHHHHhh
Confidence 1111111111100 011123456689999999 9999988764
No 174
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.96 E-value=6.2e-09 Score=95.89 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChh------
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG------ 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g------ 257 (411)
.++.++||||...........++. ......|.+++|.+.............+.+.-....+|+||+|......
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~-~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEE-MKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHH-hCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccc
Confidence 478999999986432111111211 1233567777776654333333333333333334588999999854311
Q ss_pred -----hHHHHHHhcCCCeEEecccccccc-c---c-cCCcchhhhhh--cCCCCHHHHHHHHHhhCCCC
Q 015221 258 -----GALSAVAATKSPVIFIGTGEHMDE-F---E-VFDVKPFVSRL--LGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 258 -----~~l~~~~~~g~Pi~fi~~Ge~i~~-l---~-~f~p~~~vs~~--~g~Gdi~~L~e~i~~~~~~~ 314 (411)
..+.... +.+.. + . .+.+...+|+. .|.+ +..|.+.+...+++.
T Consensus 131 ~~~~~~~l~~i~------------~~~~~~~~~~~~~~p~v~~vS~~~~~~~~-~~~l~~~~~~~l~~~ 186 (197)
T cd04104 131 SFNREQVLQEIR------------DNCLENLQEAGVSEPPVFLVSNFDPSDYD-FPKLRETLLKDLPAH 186 (197)
T ss_pred cccHHHHHHHHH------------HHHHHHHHHcCCCCCCEEEEeCCChhhcC-hHHHHHHHHHHhhHH
Confidence 1111111 11111 1 1 12344556766 4566 999999999888754
No 175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.96 E-value=6.3e-09 Score=91.51 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=82.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||+++++. +.+.. . .+.+ ..+..+...... ....
T Consensus 2 kv~v~G~~~~GKTtli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~-------------~~~~ 47 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFT------DGKFS---E-QYKS-----------TIGVDFKTKTIE-------------VDGK 47 (164)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------ceeeEEEEEEEE-------------ECCE
Confidence 48999999999999999998 44331 1 0000 001110000000 0011
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||..... .... .....+|.+++|+|++....... ....+.. .-.+..+|.||+|.....
T Consensus 48 ~~~~~l~D~~G~~~~~----~~~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 48 RVKLQIWDTAGQERFR----SITS--SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred EEEEEEEECCChHHHH----HHHH--HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 2567899999963211 1111 11236799999999976432211 1122221 224568899999975421
Q ss_pred h----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-i~~l~~~i~~~~ 161 (164)
T smart00175 122 QVSREEAEAFAEEHG------------------LPFFETSAKTNTN-VEEAFEELAREI 161 (164)
T ss_pred CCCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 1 1111111111 2245578889999 999999887765
No 176
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.95 E-value=5.8e-09 Score=96.28 Aligned_cols=161 Identities=12% Similarity=0.041 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||++++++ +.+. .+.|.|... ..++.... .....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~------~~~f----~~~~~pt~~-----------~~~~~~~i-------------~~~~~ 47 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFL------AQEF----PEEYIPTEH-----------RRLYRPAV-------------VLSGR 47 (198)
T ss_pred EEEEECCCCCcHHHHHHHHH------cCCC----CcccCCccc-----------cccceeEE-------------EECCE
Confidence 48999999999999999998 3321 111222110 00000000 00011
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHH--HHHHhcCCCeeEEEeeCcchhhHHH---HHHHHh------ccCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK------QSVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~------~~~~~~~vIlnK~D 251 (411)
.+.+.|+||||.........++.. .......+|.+++|+|++....... ....+. ....+..+|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 367889999996432111111111 1122347899999999986532211 111111 11235688999999
Q ss_pred CCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 252 ~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+....-...... +.+..-....+-..+|++.|.| ++.+++.+.+..
T Consensus 128 l~~~~~~~~~~~-------------~~~~~~~~~~~~~e~Sak~g~~-v~~lf~~i~~~~ 173 (198)
T cd04142 128 QQRHRFAPRHVL-------------SVLVRKSWKCGYLECSAKYNWH-ILLLFKELLISA 173 (198)
T ss_pred ccccccccHHHH-------------HHHHHHhcCCcEEEecCCCCCC-HHHHHHHHHHHh
Confidence 843210000000 0000000113445689999999 999998887655
No 177
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.95 E-value=4.6e-09 Score=90.96 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=79.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||+++++. +.+..-....+ .+..+....-. ....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~------~~~~~~~~~~t---------------~~~~~~~~~~~-------------~~~~ 47 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFV------DGKFDENYKST---------------IGVDFKSKTIE-------------IDGK 47 (159)
T ss_pred eEEEECCCCCCHHHHHHHHH------hCcCCCccCCc---------------eeeeeEEEEEE-------------ECCE
Confidence 48999999999999999997 43322211100 00110000000 0012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhccC---CceEEEEeCCCCC-CC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSV---SVGAVIVTKMDGH-AK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~~---~~~~vIlnK~D~~-~~ 255 (411)
.+++.++||||...... ... ....++|.+++|+|++.... .......+.... .+..+|+||+|.. ..
T Consensus 48 ~~~~~l~D~~g~~~~~~----~~~--~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 48 TVKLQIWDTAGQERFRS----ITP--SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred EEEEEEEecCChHHHHH----HHH--HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 47789999999742211 111 12236799999999976421 111222332222 4568899999985 22
Q ss_pred hhhHH---HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 256 GGGAL---SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 256 ~g~~l---~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
..... ..... ...+...+|+..|.| ++.+++.+.
T Consensus 122 ~~~~~~~~~~~~~------------------~~~~~~~~sa~~~~~-i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQFAKE------------------NGLLFFETSAKTGEN-VEELFQSLA 158 (159)
T ss_pred cccHHHHHHHHHH------------------cCCeEEEEecCCCCC-HHHHHHHHh
Confidence 11111 11111 123445678888888 888887764
No 178
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.95 E-value=1.5e-08 Score=91.38 Aligned_cols=152 Identities=20% Similarity=0.137 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. .|.-. +. .|. .+..+.. ...
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~-----~~~~~---~~---~~t-----------~~~~~~~-----------------~~~ 54 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLK-----LGESV---TT---IPT-----------IGFNVET-----------------VTY 54 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHh-----cCCCC---Cc---CCc-----------cccceEE-----------------EEE
Confidence 569999999999999999995 12211 11 110 0111100 011
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHH-hcc---CCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAF-KQS---VSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f-~~~---~~~~~vIlnK~D~~~ 254 (411)
.++.+.+.||||...... + .. .....+|.+++|+|++.... .......+ .+. ..+..+|.||+|+..
T Consensus 55 ~~~~l~l~D~~G~~~~~~-~---~~--~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP-L---WR--HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred CCEEEEEEECCCChhhHH-H---HH--HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 357789999999743221 1 11 11346899999999875421 12222222 111 135688999999853
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCc-chhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDV-KPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p-~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ...+....+. ..+..... ...+|+.+|.| ++++++.+.+.+
T Consensus 129 ~~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 173 (175)
T smart00177 129 AMK-AAEITEKLGL-----------HSIRDRNWYIQPTCATSGDG-LYEGLTWLSNNL 173 (175)
T ss_pred CCC-HHHHHHHhCc-----------cccCCCcEEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 211 1122222221 11111111 22489999999 999999987764
No 179
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.95 E-value=1.8e-08 Score=90.29 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. ..... . +.|. .+..+.. ...
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~------~~~~~--~---~~~t-----------~g~~~~~-----------------~~~ 50 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLK------LGQSV--T---TIPT-----------VGFNVET-----------------VTY 50 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHc------cCCCc--c---ccCC-----------cccceEE-----------------EEE
Confidence 468999999999999999996 22110 1 1111 0111100 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh-cc---CCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK-QS---VSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~-~~---~~~~~vIlnK~D~~~ 254 (411)
.++.+.+.||||..... .+.. .....+|.+++|+|++..... ......+. .. -.+..+|.||+|...
T Consensus 51 ~~~~~~l~Dt~G~~~~~-----~~~~-~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 51 KNVKFNVWDVGGQDKIR-----PLWR-HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCEEEEEEECCCCHHHH-----HHHH-HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 25778999999974321 1111 122367999999999864222 11122221 11 135688999999854
Q ss_pred ChhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
... .-.+....+ ...+.. ..+...+|++.|.| ++++++++.+
T Consensus 125 ~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~SAk~g~g-v~~~~~~l~~ 167 (168)
T cd04149 125 AMK-PHEIQEKLG-----------LTRIRDRNWYVQPSCATSGDG-LYEGLTWLSS 167 (168)
T ss_pred CCC-HHHHHHHcC-----------CCccCCCcEEEEEeeCCCCCC-hHHHHHHHhc
Confidence 311 111111111 011111 11334689999999 9999988753
No 180
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.95 E-value=4.5e-09 Score=90.42 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. +.+ .....++ + ....+... ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~------~~~-~~~~~~~------------~--~~~~~~~~---------------~~~~ 45 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLL------GNK-FITEYKP------------G--TTRNYVTT---------------VIEE 45 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCC-CcCcCCC------------C--ceeeeeEE---------------EEEE
Confidence 358999999999999999998 544 2222110 0 00000000 0011
Q ss_pred CC--CCEEEEeCCCCCcchHHHHHHHHHHHH-hcCCCeeEEEeeCcchh-hHHHHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 182 EN--CDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 182 ~~--~d~viIDTaG~~~~~~~l~~el~~i~~-~~~~d~vllVvda~~g~-~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
++ +.+.++||||................. ....|.+.+|.++..+. ........+...-.+..+++||+|.....
T Consensus 46 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~- 124 (161)
T TIGR00231 46 DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK- 124 (161)
T ss_pred CCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-
Confidence 23 778999999954332211111111111 11234444444443332 22222222222123468899999985532
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
...... ..... ..+.+...+|+..|.| +..+++.+.
T Consensus 125 -~~~~~~------------~~~~~-~~~~~~~~~sa~~~~g-v~~~~~~l~ 160 (161)
T TIGR00231 125 -LKTHVA------------FLFAK-LNGEPIIPLSAETGKN-IDSAFKIVE 160 (161)
T ss_pred -hhHHHH------------HHHhh-ccCCceEEeecCCCCC-HHHHHHHhh
Confidence 111111 11111 1234456789999999 888887664
No 181
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.94 E-value=8.5e-09 Score=90.83 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=82.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|.+||||||++++|. ..+.. ...+ ..+..+.. +...+
T Consensus 2 v~lvG~~~~GKTsl~~~l~------~~~~~--~~~~--------------t~~~~~~~-----------------~~~~~ 42 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ------LGEVV--TTIP--------------TIGFNVET-----------------VTYKN 42 (158)
T ss_pred EEEECCCCCCHHHHHHHHc------cCCCc--CcCC--------------ccCcCeEE-----------------EEECC
Confidence 7899999999999999996 22211 1110 00111100 01135
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHH-Hhc---cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQA-FKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~-f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
..+.++||||...... +. ......++.+++|+|++..... ...... +.. .-.+..+|+||+|.....
T Consensus 43 ~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 116 (158)
T cd04151 43 LKFQVWDLGGQTSIRP-----YW-RCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL 116 (158)
T ss_pred EEEEEEECCCCHHHHH-----HH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC
Confidence 6789999999753221 11 1122368999999998754221 111111 111 124578999999985331
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
. ........+.. ... ....+...+|+..|.| ++.+++.+.+
T Consensus 117 ~-~~~i~~~~~~~--------~~~--~~~~~~~~~Sa~~~~g-i~~l~~~l~~ 157 (158)
T cd04151 117 S-EAEISEKLGLS--------ELK--DRTWSIFKTSAIKGEG-LDEGMDWLVN 157 (158)
T ss_pred C-HHHHHHHhCcc--------ccC--CCcEEEEEeeccCCCC-HHHHHHHHhc
Confidence 1 11121111110 000 0112456799999999 9999998754
No 182
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=98.94 E-value=5.2e-09 Score=98.41 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=51.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHH---hhhhcCcceeccC-----------CCCC
Q 015221 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ---NATKAKIPFYGSY-----------TESD 167 (411)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~---~~~~~~v~~~~~~-----------~~~d 167 (411)
+|++. |.-||||||++.+||..|+++|++|.++|.|.+.+..-.-+.. +..+.++++.... ...+
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~ 81 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGE 81 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCc
Confidence 34444 7779999999999999999999999999999987665322221 1222232221110 1111
Q ss_pred hHH--HHHHHHHHHhcCCCCEEEEeCCCCCc
Q 015221 168 PVR--IAVEGVETFKKENCDLIIVDTSGRHK 196 (411)
Q Consensus 168 ~~~--i~~~~l~~~~~~~~d~viIDTaG~~~ 196 (411)
+.. .....+..+. .++||++|||||...
T Consensus 82 ~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~ 111 (261)
T PF09140_consen 82 NVEDKRLEQALADLE-GDLDFLVIDTPGTDD 111 (261)
T ss_dssp HHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-
T ss_pred chhHHHHHHHHHHHh-cCCCEEEEeCCCCCc
Confidence 221 2334444443 579999999999764
No 183
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.94 E-value=8.7e-09 Score=90.93 Aligned_cols=149 Identities=14% Similarity=0.054 Sum_probs=80.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||+++++. +.+.. +.+.+...+. ....+.. ...
T Consensus 2 ki~v~G~~~~GKTsli~~~~------~~~~~----~~~~~t~~~~-------~~~~~~~------------------~~~ 46 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFV------QGHFV----DDYDPTIEDS-------YRKQIEI------------------DGE 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCcCC----cccCCchhhh-------EEEEEEE------------------CCE
Confidence 58999999999999999998 33211 1111110000 0000000 011
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHh---c-cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---Q-SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~---~-~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.++||||...... +.. .....++.+++|.|++...... .....+. . .-.+..+|.||+|....
T Consensus 47 ~~~l~i~Dt~g~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 47 VCLLDILDTAGQEEFSA-----MRD-QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred EEEEEEEECCCcccchH-----HHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 35678999999753321 111 1122568899999987543211 1111111 1 11245788999998542
Q ss_pred hh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. .........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~~ 161 (164)
T smart00173 121 RVVSTEEGKELARQWG------------------CPFLETSAKERVN-VDEAFYDLVREI 161 (164)
T ss_pred ceEcHHHHHHHHHHcC------------------CEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 11 1111111111 2345689999999 999999887654
No 184
>CHL00071 tufA elongation factor Tu
Probab=98.93 E-value=8.5e-09 Score=105.60 Aligned_cols=130 Identities=22% Similarity=0.190 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+++|||||+++|......-..+.....+ ..++... ....++..-... ..+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~------~~d~~~~-e~~rg~T~~~~~-------------~~~ 70 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYD------EIDSAPE-EKARGITINTAH-------------VEY 70 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccc------cccCChh-hhcCCEeEEccE-------------EEE
Confidence 34569999999999999999998543321111111100 0011110 011122111000 011
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~~ 255 (411)
..++..++||||||.. .++..+ +.....+|.+++|+|+..|.. ..+.+..... ..+...+++||+|....
T Consensus 71 ~~~~~~~~~iDtPGh~----~~~~~~--~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 71 ETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred ccCCeEEEEEECCChH----HHHHHH--HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 1246788999999953 344444 233346799999999986632 2223333222 23324578999998653
No 185
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.93 E-value=9e-09 Score=97.52 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=50.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.++++|+|||||||+++.|+ |.+..+.+. ++ ++..-.+ + .+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt------g~~~~v~~~-~~-----------tT~~~~~--g----------------~~~~~ 45 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT------NTKSEVAAY-EF-----------TTLTCVP--G----------------VLEYK 45 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH------CCCccccCC-CC-----------ccccceE--E----------------EEEEC
Confidence 48899999999999999999 654322111 00 0000000 0 00123
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHH-HHHhcCCCeeEEEeeCcchh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQ 227 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~-i~~~~~~d~vllVvda~~g~ 227 (411)
+..+.++||||.............. +.....+|.+++|+|++...
T Consensus 46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence 5678899999975332111111111 22344779999999987543
No 186
>PRK12736 elongation factor Tu; Reviewed
Probab=98.93 E-value=1e-08 Score=104.59 Aligned_cols=170 Identities=20% Similarity=0.176 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+...|+++|..++|||||+++|.......|....... .|.. .. -...++..-... .
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~--------~~-E~~rg~T~~~~~-------------~ 68 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAA--------PE-EKERGITINTAH-------------V 68 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCC--------HH-HHhcCccEEEEe-------------e
Confidence 3466999999999999999999965544443221111 1111 00 001122111100 0
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.+..+++.+.|+||||.. +++..+ +.....+|.+++|+|+..|. ...+.+..... ..+...+++||+|...
T Consensus 69 ~~~~~~~~i~~iDtPGh~----~f~~~~--~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred EecCCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc
Confidence 111235788999999953 343333 23334779999999998752 22223333222 2233457799999853
Q ss_pred ChhhHHHHH--------HhcCCCeEEecccccccccccCCcchhhhhhcCC--------CCHHHHHHHHHhhCC
Q 015221 255 KGGGALSAV--------AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM--------GDWSGFMDKIHEVVP 312 (411)
Q Consensus 255 ~~g~~l~~~--------~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~--------Gdi~~L~e~i~~~~~ 312 (411)
.. ...... ...+.+ ....|..++|++.|. + +..|++.+.+.++
T Consensus 143 ~~-~~~~~i~~~i~~~l~~~~~~-------------~~~~~ii~vSa~~g~~~~~~~~~~-i~~Ll~~l~~~lp 201 (394)
T PRK12736 143 DE-ELLELVEMEVRELLSEYDFP-------------GDDIPVIRGSALKALEGDPKWEDA-IMELMDAVDEYIP 201 (394)
T ss_pred hH-HHHHHHHHHHHHHHHHhCCC-------------cCCccEEEeeccccccCCCcchhh-HHHHHHHHHHhCC
Confidence 22 111111 111110 012345566777662 4 7888888888775
No 187
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.92 E-value=8.2e-09 Score=90.71 Aligned_cols=152 Identities=17% Similarity=0.138 Sum_probs=81.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++++|. +.+.... . .+. .+..++...-. ....
T Consensus 2 ki~liG~~~~GKSsli~~l~------~~~~~~~-~---~~~-----------~~~~~~~~~~~-------------~~~~ 47 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFM------YDTFDNQ-Y---QAT-----------IGIDFLSKTMY-------------LEDK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCcc-C---CCc-----------eeeeEEEEEEE-------------ECCE
Confidence 48999999999999999998 5544321 1 010 01111000000 0001
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhccC---CceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSV---SVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~~---~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||..... .... .....+|.+++|.|++.... .......+.... .+..+|+||+|...+.
T Consensus 48 ~~~l~~~D~~G~~~~~----~~~~--~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 48 TVRLQLWDTAGQERFR----SLIP--SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred EEEEEEEECCCcHHHH----HHHH--HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence 2568899999964221 1111 11236789999999975432 222222222211 3468899999984321
Q ss_pred hhHHH-HHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l~-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..... ..... ... ..+...+|+..|.| ++.+++.+.+.
T Consensus 122 ~~~~~~~~~~~-------------~~~--~~~~~~~Sa~~~~~-v~~l~~~i~~~ 160 (161)
T cd01861 122 QVSTEEGEKKA-------------KEL--NAMFIETSAKAGHN-VKELFRKIASA 160 (161)
T ss_pred ccCHHHHHHHH-------------HHh--CCEEEEEeCCCCCC-HHHHHHHHHHh
Confidence 11111 11000 000 12345689999999 99999988764
No 188
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.92 E-value=1.8e-08 Score=88.57 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++++|. +.+... .. .+ ..+.......+. . ...
T Consensus 2 ki~v~G~~~~GKSsli~~l~------~~~~~~-~~---~~-------~~~~~~~~~~~~-~----------------~~~ 47 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFT------DDTFDP-DL---AA-------TIGVDFKVKTLT-V----------------DGK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCc-cc---CC-------cccceEEEEEEE-E----------------CCE
Confidence 48999999999999999998 433211 00 00 000000000000 0 012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH------HHHHhc-cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ------AQAFKQ-SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~------a~~f~~-~~~~~~vIlnK~D~~~~ 255 (411)
.+++.++||||..... .+. ......+|.+++|+|++........ ...+.. .-.+..+|.||+|...+
T Consensus 48 ~~~~~l~D~~g~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 48 KVKLAIWDTAGQERFR-----TLT-SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR 121 (161)
T ss_pred EEEEEEEECCCchhhh-----hhh-HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc
Confidence 3678999999963211 111 1112367999999998755322221 112211 12345788999998633
Q ss_pred hh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.. .........+ .+...+|+..|.| ++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~~~~~~~~~ 160 (161)
T cd01863 122 EVTREEGLKFARKHN------------------MLFIETSAKTRDG-VQQAFEELVEK 160 (161)
T ss_pred ccCHHHHHHHHHHcC------------------CEEEEEecCCCCC-HHHHHHHHHHh
Confidence 21 1111111111 2345689999999 99999887654
No 189
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.92 E-value=9.8e-09 Score=91.17 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=82.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++++|. +.+..- .+.+ ..++.+....... ...
T Consensus 3 ki~i~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~~-------------~~~ 48 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYA------DDSFTS----AFVS-----------TVGIDFKVKTVFR-------------NDK 48 (165)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCC----CCCC-----------ceeeEEEEEEEEE-------------CCE
Confidence 58999999999999999998 433210 0101 0111111000000 011
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.+.||||..... .+. ......++.+++|.|.+..... .+....+.. ...+..+|.||+|+....
T Consensus 49 ~~~~~l~Dt~g~~~~~-----~~~-~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 49 RVKLQIWDTAGQERYR-----TIT-TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred EEEEEEEECCChHHHH-----HHH-HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 3678899999964211 111 1223467899999998754221 112222222 123468899999985431
Q ss_pred ----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 ----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..........+ .+...+|+..|.| +..+++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (165)
T cd01865 123 VVSSERGRQLADQLG------------------FEFFEASAKENIN-VKQVFERLVDII 162 (165)
T ss_pred ccCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 11111111111 1345579999999 999999987664
No 190
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.92 E-value=5e-09 Score=111.84 Aligned_cols=109 Identities=23% Similarity=0.153 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCCcchHH-HHHHH-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhH-
Q 015221 183 NCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGA- 259 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~-l~~el-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~- 259 (411)
++.+.++||||....... ..+.+ +.......+|.+++|+|++..+..........+...+..+|+||+|...+.+..
T Consensus 40 ~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~ 119 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRI 119 (591)
T ss_pred CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChh
Confidence 567899999997543211 11111 122223368999999999865443333333333334568899999985433221
Q ss_pred --HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 260 --LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 260 --l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.......|.| ...+|+..|.| ++++++.+.+.
T Consensus 120 d~~~L~~~lg~p------------------vv~tSA~tg~G-i~eL~~~i~~~ 153 (591)
T TIGR00437 120 DEEKLEERLGVP------------------VVPTSATEGRG-IERLKDAIRKA 153 (591)
T ss_pred hHHHHHHHcCCC------------------EEEEECCCCCC-HHHHHHHHHHH
Confidence 1122223333 34566666776 77777666554
No 191
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.91 E-value=7.2e-09 Score=91.88 Aligned_cols=151 Identities=15% Similarity=0.051 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. +.+... .+.+. .++.+....-. ...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~------~~~~~~----~~~~t-----------~~~~~~~~~~~-------------~~~ 48 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFA------DDTYTE----SYIST-----------IGVDFKIRTIE-------------LDG 48 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCCCCC----CCCCc-----------cceeEEEEEEE-------------ECC
Confidence 358999999999999999998 332111 11110 11111100000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.++||||..... .+.. .....+|.+++|+|++....... ....+.. .-.+..+|.||+|....
T Consensus 49 ~~~~~~i~D~~G~~~~~-----~~~~-~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 49 KTIKLQIWDTAGQERFR-----TITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred EEEEEEEEECCCcHhHH-----HHHH-HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 13567899999953211 1111 11236799999999976432211 1222211 11346788999997543
Q ss_pred hhh----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... +....... ..|...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~------------------~~~~~~~Sa~~~~~-v~~~~~~i~~~~ 163 (166)
T cd01869 123 RVVDYSEAQEFADEL------------------GIPFLETSAKNATN-VEQAFMTMAREI 163 (166)
T ss_pred cCCCHHHHHHHHHHc------------------CCeEEEEECCCCcC-HHHHHHHHHHHH
Confidence 111 11111111 12445689999999 999998887654
No 192
>PRK12735 elongation factor Tu; Reviewed
Probab=98.91 E-value=2e-08 Score=102.42 Aligned_cols=127 Identities=21% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+...|+++|.+++|||||+++|.......|..-.... .|... +. ...|+..-....
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E-----~~rGiT~~~~~~------------- 68 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAP----EE-----KARGITINTSHV------------- 68 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCCh----hH-----HhcCceEEEeee-------------
Confidence 3456999999999999999999976555443211110 11100 00 011221110000
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.+..++..+.|+||||.. ++...+. .....+|.+++|+|+..+.. ..+.+..... ..+...+++||+|...
T Consensus 69 ~~~~~~~~i~~iDtPGh~----~f~~~~~--~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 69 EYETANRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEcCCCcEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 011235678999999963 3433332 33447899999999987522 2223332222 2333335799999864
No 193
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.91 E-value=8e-09 Score=91.01 Aligned_cols=103 Identities=17% Similarity=0.029 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HH---HHHhccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QA---QAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a---~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||...... ... .....+|.+++|+|++....... .. ..+...-.+..+|.||+|.....
T Consensus 48 ~~~l~l~D~~G~~~~~~----~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 48 RVKLQIWDTAGQERFRS----VTR--SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred EEEEEEEECcchHHHHH----hHH--HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 36788999999642211 111 12236799999999986532211 11 22222223467889999985421
Q ss_pred h----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
. .+.......+ .+...+|+..|.| +..+++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~~~~~~~~~ 160 (161)
T cd04113 122 EVTFLEASRFAQENG------------------LLFLETSALTGEN-VEEAFLKCARS 160 (161)
T ss_pred cCCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHh
Confidence 1 1111111111 2345589999999 99999887653
No 194
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.90 E-value=1.4e-08 Score=89.44 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++++|. +.+..- .+.+ ..+..+..... .....
T Consensus 2 ki~~vG~~~vGKTsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~-------------~~~~~ 47 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYC------EGRFVS----KYLP-----------TIGIDYGVKKV-------------SVRNK 47 (168)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCCC----CCCC-----------ccceeEEEEEE-------------EECCe
Confidence 48999999999999999998 433210 0100 00111000000 00012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc--------cCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ--------SVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~--------~~~~~~vIlnK~D 251 (411)
.+.+.|+||||..... .+.. .....+|.+++|+|.+.... .......+.. ...+..+|.||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 48 EVRVNFFDLSGHPEYL-----EVRN-EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred EEEEEEEECCccHHHH-----HHHH-HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 4678899999974211 1211 11236789999999875421 1112222211 1234688999999
Q ss_pred CCCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 252 GHAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 252 ~~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...+. ..........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 l~~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~l 166 (168)
T cd04119 122 LTKHRAVSEDEGRLWAESKG------------------FKYFETSACTGEG-VNEMFQTLFSSI 166 (168)
T ss_pred cccccccCHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 85321 01111111111 2335689999999 999999887643
No 195
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.89 E-value=1.6e-08 Score=98.86 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+|+||||++|.|. |.++..++.- .+. +. ...... . .
T Consensus 38 ~~rIllvGktGVGKSSliNsIl------G~~v~~vs~f--~s~---------t~-~~~~~~-~----------------~ 82 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSII------GERIATVSAF--QSE---------GL-RPMMVS-R----------------T 82 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------CCCcccccCC--CCc---------ce-eEEEEE-E----------------E
Confidence 4679999999999999999999 9888776541 000 00 000000 0 0
Q ss_pred cCCCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEe--eCcchh----hHHHH-HHHHhcc-CCceEEEEeC
Q 015221 181 KENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVM--DSSIGQ----AAFDQ-AQAFKQS-VSVGAVIVTK 249 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVv--da~~g~----~~~~~-a~~f~~~-~~~~~vIlnK 249 (411)
..++.+.+|||||...... .....++.......+|.+++|. |..... ...+. ...|.+. .....+++|+
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh 162 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTH 162 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEEC
Confidence 1378899999999875421 1111122222223689999994 433221 11222 2233222 2347889999
Q ss_pred CCCCC
Q 015221 250 MDGHA 254 (411)
Q Consensus 250 ~D~~~ 254 (411)
+|...
T Consensus 163 ~d~~~ 167 (313)
T TIGR00991 163 AQFSP 167 (313)
T ss_pred CccCC
Confidence 99764
No 196
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.89 E-value=3.2e-08 Score=86.57 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=78.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||+++++. +.+.. +.+.|...+ .+.. .+.+ ...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~------~~~~~----~~~~~t~~~---~~~~--~~~~--------------------~~~ 47 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLI------QNHFV----DEYDPTIED---SYRK--QVVI--------------------DGE 47 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCc----CCcCCcchh---eEEE--EEEE--------------------CCE
Confidence 58999999999999999998 32211 111111000 0000 0000 011
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.++||||..... .+.. .....++.+++|+|.+...... .....+.. .-.+..+|.||+|...+
T Consensus 48 ~~~~~i~Dt~G~~~~~-----~l~~-~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 48 TCLLDILDTAGQEEYS-----AMRD-QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred EEEEEEEECCCCcchH-----HHHH-HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2456789999974322 1211 1122568888898886432111 11122221 12346789999998543
Q ss_pred hhhH---HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GGGA---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g~~---l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.... .......+ .+...+|+..|.| ++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~ 160 (162)
T cd04138 122 TVSSRQGQDLAKSYG------------------IPYIETSAKTRQG-VEEAFYTLVRE 160 (162)
T ss_pred eecHHHHHHHHHHhC------------------CeEEEecCCCCCC-HHHHHHHHHHH
Confidence 2111 11111111 1345589999999 99999888654
No 197
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.89 E-value=1.5e-08 Score=90.57 Aligned_cols=151 Identities=18% Similarity=0.138 Sum_probs=80.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|++||||||++++++ +... +.+.|. .+.... .+..++
T Consensus 2 i~~~G~~~~GKTsl~~~l~------~~~~-----~~~~~t-----------~g~~~~-----------------~~~~~~ 42 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ------GEIP-----KKVAPT-----------VGFTPT-----------------KLRLDK 42 (167)
T ss_pred EEEECCCCCCHHHHHHHHh------CCCC-----ccccCc-----------ccceEE-----------------EEEECC
Confidence 7899999999999999998 4311 011110 000000 011236
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.++||||..... .+. ......+|.+++|+|++..... ......+.. .-.+..+|.||.|.....
T Consensus 43 ~~~~i~D~~G~~~~~-----~~~-~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 43 YEVCIFDLGGGANFR-----GIW-VNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred EEEEEEECCCcHHHH-----HHH-HHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 788999999964221 111 1223477999999999764321 112222211 123568899999975432
Q ss_pred hhHHHHHHhcCCCeEEeccccccc-ccccCCcchhhhhhcC------CCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLG------MGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~g------~Gdi~~L~e~i~~ 309 (411)
.........+. +.+. +.....+...+|+..| .| +.+-++++.+
T Consensus 117 -~~~~i~~~~~l--------~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g-~~~~~~wl~~ 166 (167)
T cd04161 117 -LGADVIEYLSL--------EKLVNENKSLCHIEPCSAIEGLGKKIDPS-IVEGLRWLLA 166 (167)
T ss_pred -CHHHHHHhcCc--------ccccCCCCceEEEEEeEceeCCCCccccC-HHHHHHHHhc
Confidence 11112221111 1110 0011112344889998 67 8888887754
No 198
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.89 E-value=1.2e-08 Score=89.84 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++++|. +.+..- .+.+. .+..+...... ....
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~t-----------~~~~~~~~~v~-------------~~~~ 48 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFV------KNEFSE----NQEST-----------IGAAFLTQTVN-------------LDDT 48 (163)
T ss_pred EEEEECCCCCCHHHHHHHHH------cCCCCC----CCCCc-----------cceeEEEEEEE-------------ECCE
Confidence 58999999999999999998 443211 01000 01000000000 0012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhccC---CceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQSV---SVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~~---~~~~vIlnK~D~~~~~ 256 (411)
++.+.++||||..... .+.. .....+|.+++|+|++..... ......+.... .+..+|.||+|.....
T Consensus 49 ~~~~~i~D~~G~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 49 TVKFEIWDTAGQERYR-----SLAP-MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred EEEEEEEeCCchHHHH-----HHHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 4677899999953211 1111 122367999999999765322 22222222221 2356789999975321
Q ss_pred ----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 ----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... .. .+...+|+..|.| +.++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~----------------~~--~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd01860 123 QVSTEEAQEYADE----------------NG--LLFFETSAKTGEN-VNELFTEIAKKL 162 (163)
T ss_pred cCCHHHHHHHHHH----------------cC--CEEEEEECCCCCC-HHHHHHHHHHHh
Confidence 111111111 11 2345689999999 999999987764
No 199
>PRK00049 elongation factor Tu; Reviewed
Probab=98.89 E-value=2.9e-08 Score=101.24 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
...|+++|..++|||||+++|.......|..-.... .|... +... .++...... ..
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~-----rg~Ti~~~~-------------~~ 69 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAP----EEKA-----RGITINTAH-------------VE 69 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCCh----HHHh-----cCeEEeeeE-------------EE
Confidence 456999999999999999999976655543222111 11110 0111 111110000 01
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
+..+++.++||||||.. .++..+. .....+|.+++|+|+..|.. ..+.+..... ..+...+++||+|...
T Consensus 70 ~~~~~~~i~~iDtPG~~----~f~~~~~--~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 70 YETEKRHYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EcCCCeEEEEEECCCHH----HHHHHHH--hhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 11236789999999973 3444432 23347899999999987632 2223333222 2232335799999864
No 200
>PLN03127 Elongation factor Tu; Provisional
Probab=98.88 E-value=3.3e-08 Score=102.22 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+...|+++|..++|||||+++|.....+.|+...... .|... +.-++..+.. +...
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~----~E~~rGiTi~-~~~~----------------- 117 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAP----EEKARGITIA-TAHV----------------- 117 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCCh----hHhhcCceee-eeEE-----------------
Confidence 3456999999999999999999877665555433322 22111 0001111111 1100
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.+..+++.++||||||... ++..+. .....+|.+++|+|+..|.. ..+.+..... ..+...+++||+|...
T Consensus 118 ~~~~~~~~i~~iDtPGh~~----f~~~~~--~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 118 EYETAKRHYAHVDCPGHAD----YVKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred EEcCCCeEEEEEECCCccc----hHHHHH--HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 1112357889999999753 333332 23346899999999986521 2223333222 2232356799999864
No 201
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.88 E-value=7.5e-09 Score=93.11 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.|+++|.+||||||+++++. +.+.. +.+.|..... ... .+.+ ..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~------~~~~~----~~~~~t~~~~---~~~--~~~~--------------------~~ 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFV------EGHFV----ESYYPTIENT---FSK--IIRY--------------------KG 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCc----cccCcchhhh---EEE--EEEE--------------------CC
Confidence 468999999999999999998 43321 1111111000 000 0000 01
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
.++.+.++||||..... .+. -......+.+++|.|.+.... .......+.+ .-.+..+|.||+|...
T Consensus 47 ~~~~~~l~D~~g~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 47 QDYHLEIVDTAGQDEYS-----ILP-QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEEEEEECCChHhhH-----HHH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 24678999999964211 111 112235688899999875432 1111122211 1125688999999753
Q ss_pred Chhh-H--H-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGG-A--L-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~-~--l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... . . ......+ .+...+|+..|.| +..+++++.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-v~~l~~~l~~~~ 162 (180)
T cd04137 121 QRQVSTEEGKELAESWG------------------AAFLESSARENEN-VEEAFELLIEEI 162 (180)
T ss_pred cCccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2110 0 0 1111111 2345689999999 999999987765
No 202
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.88 E-value=1.7e-08 Score=88.69 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=58.0
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHh---c-cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK---Q-SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~---~-~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.|.||||..... .+... ....++.+++|.|.+.... .......+. . .-.+..+|.||+|.....
T Consensus 49 ~~l~i~Dt~G~~~~~-----~~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 122 (163)
T cd04136 49 CMLEILDTAGTEQFT-----AMRDL-YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER 122 (163)
T ss_pred EEEEEEECCCccccc-----hHHHH-HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 556789999964322 12111 1236788999999875422 111112222 1 113457889999985321
Q ss_pred hhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
....... +.+ ..+. .|...+|+..|.| +..+++.+.+.+
T Consensus 123 ~~~~~~~-------------~~~~~~~~--~~~~~~Sa~~~~~-v~~l~~~l~~~~ 162 (163)
T cd04136 123 VVSREEG-------------QALARQWG--CPFYETSAKSKIN-VDEVFADLVRQI 162 (163)
T ss_pred eecHHHH-------------HHHHHHcC--CeEEEecCCCCCC-HHHHHHHHHHhc
Confidence 1111100 111 0111 3446689999999 999999887643
No 203
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.88 E-value=4.4e-08 Score=86.78 Aligned_cols=149 Identities=20% Similarity=0.127 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||+++++.. |..+ + +.|. .+..+.. ....
T Consensus 2 kv~~~G~~~~GKTsli~~l~~-----~~~~---~---~~pt-----------~g~~~~~-----------------~~~~ 42 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL-----GEIV---T---TIPT-----------IGFNVET-----------------VEYK 42 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc-----CCCc---c---cCCC-----------CCcceEE-----------------EEEC
Confidence 488999999999999999861 2211 1 1110 0111000 0112
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHH-hc---cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAF-KQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f-~~---~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.+.||||..... .+. -.....+|.+++|+|++... ......... .. ...+..++.||.|+...
T Consensus 43 ~~~~~l~D~~G~~~~~-----~~~-~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 43 NISFTVWDVGGQDKIR-----PLW-RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CEEEEEEECCCCHhHH-----HHH-HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 5678999999974321 111 11234779999999997532 111112111 11 11356789999998533
Q ss_pred hhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.. ........+. ..+.. ......+|++.|.| ++++++++.+
T Consensus 117 ~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sak~g~g-v~~~~~~l~~ 158 (159)
T cd04150 117 MS-AAEVTDKLGL-----------HSLRNRNWYIQATCATSGDG-LYEGLDWLSN 158 (159)
T ss_pred CC-HHHHHHHhCc-----------cccCCCCEEEEEeeCCCCCC-HHHHHHHHhc
Confidence 11 1122221111 11110 01223489999999 9999988753
No 204
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.88 E-value=2e-08 Score=106.85 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
++.+|+++|.+|+||||++++|. +.++.--. .++ .+...+. +. +
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~------~~~v~~~e----~~G-------IT~~ig~--~~-----------------v 129 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIR------KTKVAQGE----AGG-------ITQHIGA--YH-----------------V 129 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH------hCCccccc----CCc-------eeecceE--EE-----------------E
Confidence 56789999999999999999997 44432111 011 0000011 00 0
Q ss_pred hcC-CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCC-
Q 015221 180 KKE-NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (411)
Q Consensus 180 ~~~-~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~- 255 (411)
... +..+.|+||||..... .++ ......+|.+++|+|+..|. ...+........-.+..+++||+|....
T Consensus 130 ~~~~~~~i~~iDTPGhe~F~-----~~r-~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~ 203 (587)
T TIGR00487 130 ENEDGKMITFLDTPGHEAFT-----SMR-ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN 203 (587)
T ss_pred EECCCcEEEEEECCCCcchh-----hHH-HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC
Confidence 011 2378999999975332 111 12234679999999988652 2222333222222246888999998432
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.......+...|. ....+....+...+|++.|.| ++.|++.+..
T Consensus 204 ~e~v~~~L~~~g~---------~~~~~~~~~~~v~iSAktGeG-I~eLl~~I~~ 247 (587)
T TIGR00487 204 PDRVKQELSEYGL---------VPEDWGGDTIFVPVSALTGDG-IDELLDMILL 247 (587)
T ss_pred HHHHHHHHHHhhh---------hHHhcCCCceEEEEECCCCCC-hHHHHHhhhh
Confidence 1122222222221 001111123456689999999 9999998854
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.88 E-value=1.8e-08 Score=107.20 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=89.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
++.+|+++|.+|+||||++++|. +.++. ... ++.+ +...+..++............... ...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~------~~~v~--~~e---~ggi------Tq~iG~~~v~~~~~~~~~~~~~~~-~~v 64 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIR------GSAVA--KRE---AGGI------TQHIGATEIPMDVIEGICGDLLKK-FKI 64 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------ccccc--ccc---CCce------ecccCeeEeeeccccccccccccc-ccc
Confidence 45689999999999999999998 55432 110 1100 011111111000000000000000 000
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCCh-
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG- 256 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~- 256 (411)
......+.|+||||..... .++. .....+|.+++|+|++.|. ...+.+..+...-.+..+++||+|.....
T Consensus 65 ~~~~~~l~~iDTpG~e~f~-----~l~~-~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~ 138 (590)
T TIGR00491 65 RLKIPGLLFIDTPGHEAFT-----NLRK-RGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWR 138 (590)
T ss_pred ccccCcEEEEECCCcHhHH-----HHHH-HHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhh
Confidence 0111348999999963221 1211 1234689999999998652 22222333332223468899999985311
Q ss_pred ---h-hHHHH----------------------HHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 ---G-GALSA----------------------VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 ---g-~~l~~----------------------~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
+ ..+.. +...|...... ..+.++....|..++|+++|.| +++|++.+..
T Consensus 139 ~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~---~~i~~~~~~v~iVpVSA~tGeG-ideLl~~l~~ 213 (590)
T TIGR00491 139 SHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF---DRVTDFTKTVAIIPISAITGEG-IPELLTMLAG 213 (590)
T ss_pred hccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhh---hhhhhcCCCceEEEeecCCCCC-hhHHHHHHHH
Confidence 0 00000 01111110000 0011233345677899999999 9999988753
No 206
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=98.88 E-value=1.5e-08 Score=92.99 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=95.2
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC-----------------------cchHHHHHHHhhh-hcC
Q 015221 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF-----------------------RAGAFDQLKQNAT-KAK 156 (411)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~-----------------------r~~a~~qL~~~~~-~~~ 156 (411)
++|.++ |..||||||+.++|+..|++.|+||++|+.|.- ......|.-...+ ..+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~n 82 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLEN 82 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCc
Confidence 345554 999999999999999999999999999999961 1111233222222 234
Q ss_pred cceeccCCCCChH----HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHH
Q 015221 157 IPFYGSYTESDPV----RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (411)
Q Consensus 157 v~~~~~~~~~d~~----~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~ 230 (411)
+.+.+...++|.- +-....+..++..+|||||+|+|.-.... + ......+|..++|..+-.. .++-
T Consensus 83 L~lLPAsQtrdKdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G--~------~~A~~~Ad~AiVVtnPEvSsVRDsD 154 (272)
T COG2894 83 LFLLPASQTRDKDALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQG--F------KNAVYFADEAIVVTNPEVSSVRDSD 154 (272)
T ss_pred eEecccccccCcccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHH--H------HhhhhccceEEEEcCCCccccccch
Confidence 4444433333321 22344556666678999999997643211 1 1223467888888876422 2222
Q ss_pred HHH-----HHHh---ccCCceEEEEeCCCC-CCChhhHHHH---HHhcCCCeEE
Q 015221 231 DQA-----QAFK---QSVSVGAVIVTKMDG-HAKGGGALSA---VAATKSPVIF 272 (411)
Q Consensus 231 ~~a-----~~f~---~~~~~~~vIlnK~D~-~~~~g~~l~~---~~~~g~Pi~f 272 (411)
... +.++ ..-+...+++|+++. ..+.|..+++ ...+.+|+.-
T Consensus 155 RiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liG 208 (272)
T COG2894 155 RIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIG 208 (272)
T ss_pred hheeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceEE
Confidence 211 1111 111125789999996 3345666654 4556666543
No 207
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.88 E-value=1.8e-08 Score=89.59 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=62.1
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
++++.++||||........ .. ....+|.+++|+|++........ ...+.. .-.+..+|.||+|.....
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~----~~--~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANL----AA--EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred eEEEEEEeCCCchhhhHHH----hh--hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 5788999999975332211 11 12467899999998765332221 111221 123468889999985432
Q ss_pred hhH-H-HHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGA-L-SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~-l-~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... + ... ..+ ..+....+...+|+..|.| ++.+++++.+..
T Consensus 120 ~~~~~~~~~-------------~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~~~~~~ 163 (166)
T cd01893 120 SQAGLEEEM-------------LPIMNEFREIETCVECSAKTLIN-VSEVFYYAQKAV 163 (166)
T ss_pred chhHHHHHH-------------HHHHHHHhcccEEEEeccccccC-HHHHHHHHHHHh
Confidence 110 0 000 000 0111112445689999999 999999988765
No 208
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.88 E-value=1.4e-08 Score=88.72 Aligned_cols=147 Identities=13% Similarity=0.064 Sum_probs=80.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|++||||||+++++. +.+ . .+.+++...+ .....+.. ....
T Consensus 2 i~i~G~~~~GKTsli~~l~------~~~--~--~~~~~~~~~~-------~~~~~~~~------------------~~~~ 46 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFV------KGT--F--VEEYDPTIED-------SYRKTIVV------------------DGET 46 (160)
T ss_pred EEEECCCCCCHHHHHHHHH------hCC--C--CcCcCCChhH-------eEEEEEEE------------------CCEE
Confidence 7899999999999999998 432 1 1111111000 00000000 0113
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHH---hc-cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF---KQ-SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f---~~-~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.++||||...... + .. ......|.+++|+|.+..... ......+ .. ...+..+|+||+|.....
T Consensus 47 ~~~~l~D~~g~~~~~~-~---~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 47 YTLDILDTAGQEEFSA-M---RD--LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred EEEEEEECCChHHHHH-H---HH--HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 6788999999653221 1 11 112256899999998754321 1111222 12 124568899999986521
Q ss_pred h----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
. .+.......+ .|...+|+..|.| +..+++.+...
T Consensus 121 ~~~~~~~~~~~~~~~------------------~~~~~~S~~~~~~-i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWG------------------CPFIETSAKDNIN-IDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcC------------------CcEEEeccCCCCC-HHHHHHHHHhh
Confidence 1 1111111111 3456788999998 99999988654
No 209
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.87 E-value=9.6e-09 Score=90.22 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.++||||...... +.. ......+.+++|+|...... .......+.. .-.+..+|+||+|....
T Consensus 47 ~~~~~i~D~~g~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 47 DVQLNILDTAGQEDYAA-----IRD-NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred EEEEEEEECCChhhhhH-----HHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 46789999999743221 111 12235578889989765421 1122222222 12346889999998542
Q ss_pred hhhH----HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGA----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~----l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .......+ .|...+|++.|.| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 161 (164)
T cd04139 121 RQVSSEEAANLARQWG------------------VPYVETSAKTRQN-VEKAFYDLVREI 161 (164)
T ss_pred cccCHHHHHHHHHHhC------------------CeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 1111 11111111 2446789999999 999998887654
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.87 E-value=1.3e-08 Score=95.41 Aligned_cols=67 Identities=25% Similarity=0.418 Sum_probs=40.4
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-------h--hHHHHHHHHhc-cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-------Q--AAFDQAQAFKQ-SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-------~--~~~~~a~~f~~-~~~~~~vIlnK~ 250 (411)
..++.+.++||||... +...+ +.....+|.+++|+|++.+ . ........... ..++..+++||+
T Consensus 74 ~~~~~i~liDtpG~~~----~~~~~--~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 74 TEKYRFTILDAPGHRD----FVPNM--ITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred eCCeEEEEEECCChHH----HHHHH--HHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 4578999999999632 22222 2233467999999999863 1 11222221111 224456799999
Q ss_pred CCC
Q 015221 251 DGH 253 (411)
Q Consensus 251 D~~ 253 (411)
|..
T Consensus 148 Dl~ 150 (219)
T cd01883 148 DDV 150 (219)
T ss_pred ccc
Confidence 986
No 211
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.87 E-value=1.2e-08 Score=91.01 Aligned_cols=151 Identities=14% Similarity=0.055 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. +.+...... + ..+..+..... ....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~------~~~~~~~~~-~--------------t~~~~~~~~~~-------------~~~~ 50 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD-L--------------TIGVEFGARMI-------------TIDG 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCCCC-C--------------ccceeEEEEEE-------------EECC
Confidence 469999999999999999998 433221111 0 00111000000 0001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH---HHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~---a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
....+.|+||||... + ..+.. .....+|.+++|+|++......+. ...... .-.+..+|.||+|...+
T Consensus 51 ~~~~~~i~Dt~G~~~----~-~~~~~-~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 51 KQIKLQIWDTAGQES----F-RSITR-SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred EEEEEEEEECCCcHH----H-HHHHH-HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 135788999999531 1 11111 122367999999999854322221 211211 12346888999998532
Q ss_pred hhh-H---HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGG-A---LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~-~---l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... . .......+ .+...+|+..|.| ++++++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-i~~~~~~~~~~~ 165 (168)
T cd01866 125 REVSYEEGEAFAKEHG------------------LIFMETSAKTASN-VEEAFINTAKEI 165 (168)
T ss_pred cCCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 111 1 11111111 1235589999999 999988876654
No 212
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.87 E-value=1.3e-08 Score=90.30 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=58.6
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH---HHHHhcc-------CCceEEEEeCCCCC
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQS-------VSVGAVIVTKMDGH 253 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~---a~~f~~~-------~~~~~vIlnK~D~~ 253 (411)
+.+.++||||..... .+. ......+|.+++++|+......... ...+... -.+..+|+||+|..
T Consensus 49 ~~~~~~D~~g~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQ-----SLG-VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHH-----hHH-HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 456789999963211 111 1122367999999998765322111 1111111 12457889999986
Q ss_pred C-Ch--hhHH-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 A-KG--GGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~-~~--g~~l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. +. .... ..... ..+.+...+|+..|.| ++.+++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 166 (172)
T cd01862 123 EKRQVSTKKAQQWCQS-----------------NGNIPYFETSAKEAIN-VEQAFETIARKA 166 (172)
T ss_pred cccccCHHHHHHHHHH-----------------cCCceEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3 21 1111 11111 1123456689999999 999999887654
No 213
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.87 E-value=2.1e-08 Score=109.42 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
.++.+|+++|..|+|||||+++|. +.++. +. .+ ++ .+.. +..+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr------~~~v~--~~-e~-~G-------IT~~--iga~~----------------- 331 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIR------KTNVA--AG-EA-GG-------ITQH--IGAYQ----------------- 331 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH------hCCcc--cc-cc-Cc-------eeee--ccEEE-----------------
Confidence 467889999999999999999996 33332 11 00 00 0000 11111
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCC-
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK- 255 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~- 255 (411)
+...++.+.|+||||...... +.. .....+|.+++|+|+..|. ...+........-.+..+++||+|....
T Consensus 332 v~~~~~~ItfiDTPGhe~F~~-----m~~-rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 332 VETNGGKITFLDTPGHEAFTA-----MRA-RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN 405 (787)
T ss_pred EEECCEEEEEEECCCCccchh-----HHH-hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC
Confidence 112357789999999754321 111 2233579999999998652 2222222222222246889999998432
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.......+...+. ..+++....|..++|++.|.| ++.|++.+..
T Consensus 406 ~e~V~~eL~~~~~---------~~e~~g~~vp~vpvSAktG~G-I~eLle~I~~ 449 (787)
T PRK05306 406 PDRVKQELSEYGL---------VPEEWGGDTIFVPVSAKTGEG-IDELLEAILL 449 (787)
T ss_pred HHHHHHHHHHhcc---------cHHHhCCCceEEEEeCCCCCC-chHHHHhhhh
Confidence 1112222221110 001122234567789999999 9999998864
No 214
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.86 E-value=2.1e-08 Score=108.58 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
.++++|+++|.+|+||||++++|. +..+.. . ..++ .+. .+..+......
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~------~~~~~~--~--e~~G-------iTq--~i~~~~v~~~~------------ 290 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIR------KTQIAQ--K--EAGG-------ITQ--KIGAYEVEFEY------------ 290 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH------hccCcc--c--cCCc-------ccc--ccceEEEEEEe------------
Confidence 356789999999999999999997 332211 0 0000 000 01111100000
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
...++.+.|+||||.. .+..... .....+|.+++|+|+..|. ...+........-.+..+++||+|.....
T Consensus 291 -~~~~~kItfiDTPGhe----~F~~mr~--rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 291 -KDENQKIVFLDTPGHE----AFSSMRS--RGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN 363 (742)
T ss_pred -cCCceEEEEEECCcHH----HHHHHHH--HHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC
Confidence 0125789999999963 2221111 2233679999999997652 22233333332223468899999985421
Q ss_pred -hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 -g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......+...+. + ...+....|...+|++.|.| ++.|++.+....
T Consensus 364 ~e~v~~eL~~~~l----l-----~e~~g~~vpvv~VSAktG~G-IdeLle~I~~l~ 409 (742)
T CHL00189 364 TERIKQQLAKYNL----I-----PEKWGGDTPMIPISASQGTN-IDKLLETILLLA 409 (742)
T ss_pred HHHHHHHHHHhcc----c-----hHhhCCCceEEEEECCCCCC-HHHHHHhhhhhh
Confidence 111222211110 0 01112234667799999999 999999887643
No 215
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.86 E-value=1.6e-08 Score=89.67 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=58.4
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHH---HHHhccCCceEEEEeCCCCCCChh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQA---QAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a---~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
+.+.++||||...... ... .....+|.+++|+|++.+.... ... ..+.....+..+|.||+|......
T Consensus 56 ~~~~~~D~~g~~~~~~----~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 56 IKLQIWDTAGQERFRS----ITQ--SYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE 129 (169)
T ss_pred EEEEEEECCCcHHHHH----HHH--HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc
Confidence 5578899999642211 111 1223678999999987653221 122 222221234578899999753211
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
...... +....... .+...+|+..|.| ++++++.+.+.
T Consensus 130 i~~~~~-------------~~~~~~~~-~~~~~~Sa~~~~g-v~~l~~~i~~~ 167 (169)
T cd04114 130 VSQQRA-------------EEFSDAQD-MYYLETSAKESDN-VEKLFLDLACR 167 (169)
T ss_pred cCHHHH-------------HHHHHHcC-CeEEEeeCCCCCC-HHHHHHHHHHH
Confidence 100000 11111111 3345689999999 99999988764
No 216
>PLN03118 Rab family protein; Provisional
Probab=98.85 E-value=2e-08 Score=93.32 Aligned_cols=151 Identities=13% Similarity=0.126 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|+ +.+..-.+. ..+..+...... ..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~------~~~~~~~~~----------------t~~~~~~~~~~~-------------~~ 58 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFI------SSSVEDLAP----------------TIGVDFKIKQLT-------------VG 58 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCcCC----------------CceeEEEEEEEE-------------EC
Confidence 4579999999999999999998 433211110 111111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHH-------HHHhcc-CCceEEEEeCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------QAFKQS-VSVGAVIVTKMDG 252 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a-------~~f~~~-~~~~~vIlnK~D~ 252 (411)
...+.+.|+||||...... +.. .....+|.+++|+|.+......+.. ..+... -.+..+|.||+|.
T Consensus 59 ~~~~~l~l~Dt~G~~~~~~-----~~~-~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 59 GKRLKLTIWDTAGQERFRT-----LTS-SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred CEEEEEEEEECCCchhhHH-----HHH-HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 1236789999999743221 111 1123679999999998653222211 111111 1245788999997
Q ss_pred CCChhh----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 253 HAKGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~g~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...... ........ ..+...+|+..|.| ++.+++.+...+
T Consensus 133 ~~~~~i~~~~~~~~~~~~------------------~~~~~e~SAk~~~~-v~~l~~~l~~~~ 176 (211)
T PLN03118 133 ESERDVSREEGMALAKEH------------------GCLFLECSAKTREN-VEQCFEELALKI 176 (211)
T ss_pred cccCccCHHHHHHHHHHc------------------CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 432111 01111101 11234579999999 999999888766
No 217
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.85 E-value=2.4e-08 Score=91.83 Aligned_cols=110 Identities=16% Similarity=0.002 Sum_probs=61.3
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---H---HHHHhc-cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---Q---AQAFKQ-SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~---a~~f~~-~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.|+||||..... .+.. .....+|.+++|+|++....... . ...+.. .-.+..+|+||+|.....
T Consensus 47 ~~l~i~D~~G~~~~~-----~~~~-~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 47 LTLDILDTSGSYSFP-----AMRK-LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred EEEEEEECCCchhhh-----HHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 567899999975322 1211 12336799999999976432211 1 111111 223568899999985421
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
........ ..........+...+|+..|.| ++.+++.+.+.+.
T Consensus 121 ~~v~~~~~------------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 163 (198)
T cd04147 121 RQVPAKDA------------LSTVELDWNCGFVETSAKDNEN-VLEVFKELLRQAN 163 (198)
T ss_pred ccccHHHH------------HHHHHhhcCCcEEEecCCCCCC-HHHHHHHHHHHhh
Confidence 11100000 0000001112345689999999 9999999988763
No 218
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.85 E-value=6e-08 Score=88.03 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. +.+.. .. .|. .+..+...... ....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~------~~~~~--~~---~~t-----------~~~~~~~~~~~------------~~~~ 49 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLK------FNEFV--NT---VPT-----------KGFNTEKIKVS------------LGNS 49 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCcC--Cc---CCc-----------cccceeEEEee------------ccCC
Confidence 458999999999999999997 32211 11 000 00110000000 0011
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHh---c-cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---Q-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~---~-~~~~~~vIlnK~D~~~ 254 (411)
.++.+.++||||..... .+.. .....+|.+++|+|++...... .....+. . .-.+..+|+||+|...
T Consensus 50 ~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 50 KGITFHFWDVGGQEKLR-----PLWK-SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred CceEEEEEECCCcHhHH-----HHHH-HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 35678999999963211 1111 1123679999999997653211 1111111 1 1235688999999753
Q ss_pred Chh-hHHHHHHhcCCCeEEeccccccccccc--CCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG-GALSAVAATKSPVIFIGTGEHMDEFEV--FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g-~~l~~~~~~g~Pi~fi~~Ge~i~~l~~--f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ..+.... + +.++.. ..+...+|+..|.| ++.+++++.+.+
T Consensus 124 ~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~SA~~~~g-i~~l~~~l~~~l 169 (183)
T cd04152 124 ALSVSEVEKLL--A-----------LHELSASTPWHVQPACAIIGEG-LQEGLEKLYEMI 169 (183)
T ss_pred cCCHHHHHHHh--C-----------ccccCCCCceEEEEeecccCCC-HHHHHHHHHHHH
Confidence 211 1111111 0 111111 12345689999999 999999988766
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.84 E-value=2.7e-08 Score=106.08 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=38.0
Q ss_pred CEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEEEEeCCCCC
Q 015221 185 DLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 185 d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
.+.|+||||..... .+.. .....+|.+++|+|++.| .........+...-.+..+++||+|..
T Consensus 72 ~i~~iDTPG~e~f~-----~~~~-~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPGHEAFT-----NLRK-RGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CEEEEECCChHHHH-----HHHH-HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 37999999974321 1111 223467999999999875 222222333332223467899999974
No 220
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.84 E-value=6.4e-08 Score=87.93 Aligned_cols=152 Identities=18% Similarity=0.102 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. .|.-+ .. -|. .+..+.. ...
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~-----~~~~~---~~---~~T-----------~~~~~~~-----------------~~~ 58 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLK-----LGEVV---TT---IPT-----------IGFNVET-----------------VEY 58 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHh-----cCCcc---cc---CCc-----------cccceEE-----------------EEE
Confidence 459999999999999999996 12211 11 000 0111000 011
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHH-hc---cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAF-KQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f-~~---~~~~~~vIlnK~D~~~ 254 (411)
.++.+.++||||..... .+. ......+|.+++|+|++.... .......+ .. .-.+..+|.||.|+..
T Consensus 59 ~~~~~~l~D~~G~~~~~-----~~~-~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLR-----PLW-RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CCEEEEEEECCCCHhHH-----HHH-HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 35788999999974221 111 112346799999999975321 11112222 11 1135678899999743
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ...+....+. +.+... .+...+|+..|.| ++++++.+.+.+
T Consensus 133 ~~~-~~~i~~~l~~-----------~~~~~~~~~~~~~Sa~tg~g-v~e~~~~l~~~i 177 (182)
T PTZ00133 133 AMS-TTEVTEKLGL-----------HSVRQRNWYIQGCCATTAQG-LYEGLDWLSANI 177 (182)
T ss_pred CCC-HHHHHHHhCC-----------CcccCCcEEEEeeeCCCCCC-HHHHHHHHHHHH
Confidence 211 1122222221 111111 1122479999999 999999987654
No 221
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.84 E-value=2.6e-08 Score=88.24 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc--CCceEEEEeCCCCCCChh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~--~~~~~vIlnK~D~~~~~g 257 (411)
.+.+.+.||||..... .+.. .....+|.+++|+|++..... ......+.+. -.+..+|.||+|......
T Consensus 48 ~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~ 121 (161)
T cd04124 48 TILVDFWDTAGQERFQ-----TMHA-SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT 121 (161)
T ss_pred EEEEEEEeCCCchhhh-----hhhH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH
Confidence 4678899999964221 1111 122367999999998765321 1222233221 135688999999743211
Q ss_pred h-HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 G-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ~-~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ....... . ..|...+|+..|.| ++.+++.+.+..
T Consensus 122 ~~~~~~~~~----------------~--~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 157 (161)
T cd04124 122 QKKFNFAEK----------------H--NLPLYYVSAADGTN-VVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHH----------------c--CCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0 0111110 0 12445689999999 999999887654
No 222
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.84 E-value=7.8e-09 Score=92.25 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=62.1
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||...... ++. ......|.+++|.|.+......+ ....+.. ...+..+|.||+|+....
T Consensus 47 ~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 47 QYLLGLYDTAGQEDYDR-----LRP-LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred EEEEEEEeCCCcccccc-----ccc-ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcCh
Confidence 46678999999753221 111 11235688899999875532111 1112211 223457889999985443
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
............++. ...|+....-....+-..+|++.|.| ++++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~g-i~~~f~~~~~~ 172 (174)
T cd04135 121 KTLARLNDMKEKPVT-VEQGQKLAKEIGAHCYVECSALTQKG-LKTVFDEAILA 172 (174)
T ss_pred hhHHHHhhccCCCCC-HHHHHHHHHHcCCCEEEEecCCcCCC-HHHHHHHHHHH
Confidence 222112111111221 01112221101112334589999999 99999988764
No 223
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.84 E-value=1.9e-08 Score=88.97 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. +.+...... |. .+..+....-. ...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~----~t-----------~~~~~~~~~~~-------------~~~ 49 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFT------RNEFNLDSK----ST-----------IGVEFATRSIQ-------------IDG 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCCCCC----Cc-----------cceEEEEEEEE-------------ECC
Confidence 358999999999999999998 543221111 10 01111000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.++||||..... .+.. .....++.+++|.|++......+ ....+.+ .-.+..+|.||+|....
T Consensus 50 ~~~~~~l~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 50 KTIKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred EEEEEEEEeCCChHHHH-----HHHH-HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 13568899999963211 1111 11235688999999975432222 1222222 11345788999997432
Q ss_pred hhh----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
... ........ ..+...+|+..|.| ++.+++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~------------------~~~~~~~Sa~~~~~-v~~l~~~l~~~ 163 (165)
T cd01868 124 RAVPTEEAKAFAEKN------------------GLSFIETSALDGTN-VEEAFKQLLTE 163 (165)
T ss_pred ccCCHHHHHHHHHHc------------------CCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 110 01111101 12335589999999 99999988654
No 224
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.83 E-value=1.8e-08 Score=89.71 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. +.+. .+.+.+ ..++++....-. ...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~------~~~f----~~~~~~-----------t~~~~~~~~~~~-------------~~~ 49 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFS------EDSF----NPSFIS-----------TIGIDFKIRTIE-------------LDG 49 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHh------hCcC----Cccccc-----------CccceEEEEEEE-------------ECC
Confidence 569999999999999999998 4321 001111 011111100000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.+.||||..... .+. ......+|.+++|.|++.+.... +....+.. .-.+..+|.||+|....
T Consensus 50 ~~~~l~l~D~~g~~~~~-----~~~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 50 KKIKLQIWDTAGQERFR-----TIT-TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred EEEEEEEEeCCchHHHH-----HHH-HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 13577899999953211 111 12233679999999987653211 11222221 11246888999998532
Q ss_pred hhh----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ........+ .|-..+|+..|.| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~~~~~i~~~~ 164 (167)
T cd01867 124 RVVSKEEGEALADEYG------------------IKFLETSAKANIN-VEEAFFTLAKDI 164 (167)
T ss_pred cCCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 111 111111111 2345689999999 999999887654
No 225
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.83 E-value=7.8e-09 Score=111.52 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=41.2
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHh-ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~-~~~~~~~vIlnK~D~~~ 254 (411)
.++..++|+||||.. .+...+. .....+|.+++|+|+..|... .+...... ...+...+++||+|...
T Consensus 101 ~~~~~~~liDtPG~~----~f~~~~~--~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 TPKRKFIVADTPGHE----QYTRNMV--TGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred cCCceEEEEECCChH----HHHHHHH--HHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 457789999999953 2322222 234478999999999766321 11121111 11234567899999864
No 226
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.83 E-value=2.9e-08 Score=102.15 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=40.6
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc--hhh--HHHHHHHHh-ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI--GQA--AFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~--g~~--~~~~a~~f~-~~~~~~~vIlnK~D~~~ 254 (411)
.+++.+.|+||||.... ...+ +.....+|.+++|+|++. +.. ......... ...+...+++||+|...
T Consensus 81 ~~~~~i~liDtpG~~~~----~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDF----VKNM--ITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred cCCeEEEEEECCCcccc----hhhH--hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 35789999999996422 1222 122346899999999986 421 112221111 11233577899999854
No 227
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.83 E-value=1.9e-08 Score=100.24 Aligned_cols=121 Identities=34% Similarity=0.403 Sum_probs=80.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc-----chHH------------HHHHHhhhhcCccee
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----AGAF------------DQLKQNATKAKIPFY 160 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r-----~~a~------------~qL~~~~~~~~v~~~ 160 (411)
.+.+.++|++|+.+|||||+++-|++.+..+|++++++|+|+-. |+.+ .|+.... ..|.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~----~~Fv 145 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFT----LYFV 145 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccc----eEEE
Confidence 45567899999999999999999999999999999999999722 3322 2222211 1222
Q ss_pred ccCCC-CChHHH---HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 161 GSYTE-SDPVRI---AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 161 ~~~~~-~d~~~i---~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
+..+. ..+... +......++.. .++++|||+|...... -++-.+.+..+.+|+.++++=++.
T Consensus 146 G~isP~~~~~~~i~~v~rL~~~a~~~-~~~ilIdT~GWi~G~~-g~elk~~li~~ikP~~Ii~l~~~~ 211 (398)
T COG1341 146 GSISPQGFPGRYIAGVARLVDLAKKE-ADFILIDTDGWIKGWG-GLELKRALIDAIKPDLIIALERAN 211 (398)
T ss_pred eccCCCCChHHHHHHHHHHHHHhhcc-CCEEEEcCCCceeCch-HHHHHHHHHhhcCCCEEEEecccc
Confidence 22222 233332 23334444433 7999999999875522 233345677788999988887664
No 228
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.82 E-value=1e-08 Score=91.54 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=63.1
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||..... .+.. .....+|.+++|.|.+......+. ...+.. .-.+..+|.||+|.....
T Consensus 45 ~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 118 (174)
T smart00174 45 PVELGLWDTAGQEDYD-----RLRP-LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK 118 (174)
T ss_pred EEEEEEEECCCCcccc-----hhch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh
Confidence 4678999999964321 1111 112367999999998764322211 112221 123568899999986532
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
............++ -...++.+..-..+.+...+|++.|.| ++++++.+.+.+
T Consensus 119 ~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~lf~~l~~~~ 171 (174)
T smart00174 119 STLRELSKQKQEPV-TYEQGEALAKRIGAVKYLECSALTQEG-VREVFEEAIRAA 171 (174)
T ss_pred hhhhhhhcccCCCc-cHHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHHHh
Confidence 21111111111111 001111121111122345589999999 999999887654
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.82 E-value=6.8e-08 Score=98.52 Aligned_cols=128 Identities=21% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+...|+++|..++|||||++.|...+...|....... .|... +.-+ .|+..-... .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~----~E~~-----rG~Ti~~~~-------------~ 68 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAP----EEKA-----RGITINTAH-------------V 68 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCH----HHHh-----cCcceeeEE-------------E
Confidence 3466999999999999999999866555444222111 11110 0001 111110000 0
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.+..+++.+.|+||||.. .+...+ +.....+|.+++|+|+..|. ...+.+..... ..+...+++||+|...
T Consensus 69 ~~~~~~~~~~liDtpGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 69 EYETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred EEcCCCEEEEEEECCchH----HHHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 011235678999999974 233333 23344779999999998752 22223333222 2333345799999864
Q ss_pred C
Q 015221 255 K 255 (411)
Q Consensus 255 ~ 255 (411)
.
T Consensus 143 ~ 143 (394)
T TIGR00485 143 D 143 (394)
T ss_pred H
Confidence 3
No 230
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.81 E-value=5.7e-09 Score=92.56 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=82.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||+++.|. +.+.. ..+.+...+ ..... .. . ...
T Consensus 2 ki~i~G~~~~GKSsli~~l~------~~~~~----~~~~~~~~~-------~~~~~-~~-~----------------~~~ 46 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYT------TGKFP----TEYVPTVFD-------NYSAT-VT-V----------------DGK 46 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCCC----CCCCCceee-------eeEEE-EE-E----------------CCE
Confidence 48899999999999999998 43320 111111000 00000 00 0 012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhcc--CCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~~--~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||..... .+.. .....+|.+++|+|++........ ...+... -.+..+|.||+|.....
T Consensus 47 ~~~l~~~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 47 QVNLGLWDTAGQEEYD-----RLRP-LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred EEEEEEEeCCCccccc-----ccch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 4678999999975321 1111 112367999999998764322211 1122211 14568899999975442
Q ss_pred hhHHHHHHhcCCCeEEeccccc--ccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEH--MDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~--i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
... ... +..-..+...+. ........+...+|+..|.| +.++++.+.+
T Consensus 121 ~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i~~ 170 (171)
T cd00157 121 NTL-KKL---EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG-VKEVFEEAIR 170 (171)
T ss_pred hhh-hhc---ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC-HHHHHHHHhh
Confidence 110 000 000000110011 11111122456689999999 9999988764
No 231
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.81 E-value=1.1e-07 Score=86.35 Aligned_cols=152 Identities=19% Similarity=0.127 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++.. |.-+ .. .|. .+..+.. ...
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~-----~~~~---~~---~pt-----------~g~~~~~-----------------~~~ 58 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKL-----GEIV---TT---IPT-----------IGFNVET-----------------VEY 58 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHcc-----CCCc---cc---cCC-----------cceeEEE-----------------EEE
Confidence 4599999999999999999861 2111 11 010 0111100 112
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
+++.+.+.||||..... .+. ......+|.+++|+|++..... ......+.. .-.+..+|.||.|...
T Consensus 59 ~~~~~~i~D~~Gq~~~~-----~~~-~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 59 KNISFTVWDVGGQDKIR-----PLW-RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CCEEEEEEECCCCHHHH-----HHH-HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 35788999999963211 111 1112367999999999854321 112222211 1135688899999754
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCC-cchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFD-VKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~-p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .-......+. ..+.+-. ....+|+..|.| ++++++++.+.+
T Consensus 133 ~~~-~~~~~~~l~l-----------~~~~~~~~~~~~~Sa~~g~g-v~e~~~~l~~~~ 177 (181)
T PLN00223 133 AMN-AAEITDKLGL-----------HSLRQRHWYIQSTCATSGEG-LYEGLDWLSNNI 177 (181)
T ss_pred CCC-HHHHHHHhCc-----------cccCCCceEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 321 1122222221 1111101 122379999999 999999987665
No 232
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.81 E-value=2.2e-08 Score=96.84 Aligned_cols=104 Identities=25% Similarity=0.314 Sum_probs=64.2
Q ss_pred CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHH
Q 015221 92 PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRI 171 (411)
Q Consensus 92 ~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i 171 (411)
.++...+..-..++++|+|+|||||++++|. |-+.-+-+. ++++..-+| +
T Consensus 54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LT------nt~seva~y------------~FTTl~~VP--G---------- 103 (365)
T COG1163 54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLT------NTKSEVADY------------PFTTLEPVP--G---------- 103 (365)
T ss_pred CcceEeccCCeEEEEEcCCCccHHHHHHHHh------CCCcccccc------------Cceeccccc--c----------
Confidence 3455555555779999999999999999999 655544333 222332233 1
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHH-HHHhcCCCeeEEEeeCcchhhHHH
Q 015221 172 AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAFD 231 (411)
Q Consensus 172 ~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~-i~~~~~~d~vllVvda~~g~~~~~ 231 (411)
-+..++..+-++|+||.......-...-++ +..+..+|.+++|+|+.......+
T Consensus 104 ------~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~ 158 (365)
T COG1163 104 ------MLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRD 158 (365)
T ss_pred ------eEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHH
Confidence 123457889999999975432111100011 233447899999999986544343
No 233
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.80 E-value=5.1e-08 Score=82.36 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=57.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcce-eccCCCC-------ChH-HHHHH
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF-YGSYTES-------DPV-RIAVE 174 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~-~~~~~~~-------d~~-~i~~~ 174 (411)
|++.|.+|+||||++.+|+.+++++|++|.++++|+ +...+.+..... +.++ ...+... -+. ...++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~--~~~~~i~~g~~~~~~~g~~~~~n~~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG--EIKLLLVMGMGRPGGEGCYCPENALLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC--CceEEEEecccccCCCCCEehhhHHHHH
Confidence 789999999999999999999999999999999999 222222222111 1111 1111100 011 14455
Q ss_pred HHHHHhcCCCCEEEEeCCCCC
Q 015221 175 GVETFKKENCDLIIVDTSGRH 195 (411)
Q Consensus 175 ~l~~~~~~~~d~viIDTaG~~ 195 (411)
.+..+...++|++++||++..
T Consensus 78 ~l~~~~~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLVLTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeEccCCCEEEEecHHHH
Confidence 566655678999999997653
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.80 E-value=1e-08 Score=106.77 Aligned_cols=66 Identities=29% Similarity=0.307 Sum_probs=41.6
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---H--HHHHHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---A--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~--~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
.+++.++||||||.. .+...+. .....+|.+++|+|+..|.. . ...+..+. .+...+++||+|...
T Consensus 104 ~~~~~i~~iDTPGh~----~f~~~~~--~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHE----QYTRNMA--TGASTCDLAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcH----HHHHHHH--HHHhhCCEEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEeecccc
Confidence 346889999999942 3333332 22357899999999987631 1 11222222 334577999999864
No 235
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.79 E-value=3.7e-08 Score=86.15 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=58.0
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.++||||..... .+... ....+|.+++|+|.+.+..... ....+.. .-.+..+|+||+|.....
T Consensus 48 ~~~~~~~D~~g~~~~~-----~~~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 48 RIDLAIWDTAGQERYH-----ALGPI-YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred EEEEEEEECCchHHHH-----HhhHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 3568899999953211 12111 1236799999999876532211 1122221 113467889999985321
Q ss_pred hhHH----HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGAL----SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l----~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.... ......+ .+...+|+..|.| ++.+++.+...
T Consensus 122 ~~~~~~~~~~~~~~~------------------~~~~~~s~~~~~g-i~~~~~~l~~~ 160 (162)
T cd04123 122 VVSKSEAEEYAKSVG------------------AKHFETSAKTGKG-IEELFLSLAKR 160 (162)
T ss_pred CCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHH
Confidence 1111 1111111 2335689999999 99999988654
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.79 E-value=5.1e-08 Score=102.68 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc---CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~---D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l 176 (411)
+.+.|+++|.+|+||||++.+|..+...- .+..-|.. +...-..+...+ ...++.+... .
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i-~~~g~v~~~~~~~~~~~D~~~~E---~~rgiSi~~~-------------~ 71 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAI-QEAGTVKGRKSGRHATSDWMEME---KQRGISVTSS-------------V 71 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCc-cccceeeccccCccccCCCcHHH---HhhCCceeee-------------e
Confidence 34679999999999999999998542210 11222211 000000000111 1112221110 0
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
..+..+++.+.++||||...... +... ....+|.+++|+|++.+.... .........-.+..+++||+|...
T Consensus 72 ~~~~~~~~~inliDTPG~~df~~----~~~~--~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 72 MQFPYRDCLINLLDTPGHEDFSE----DTYR--TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred EEEEECCEEEEEEECCCchhhHH----HHHH--HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 11224578899999999753222 2211 122569999999998763221 122222222234678999999754
No 237
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.79 E-value=5e-08 Score=104.09 Aligned_cols=173 Identities=19% Similarity=0.180 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH--cCCCce--EeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPA--LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~--~g~kv~--lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+.|+++|..++|||||+.+|...... +...+. +.|. .......++.+.....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~-----------~~~ErerGiTI~~~~~------------- 57 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDS-----------NDLERERGITILAKNT------------- 57 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccC-----------chHHHhCCccEEeeeE-------------
Confidence 35899999999999999999854321 111111 1111 0011122333221110
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHh-ccCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~-~~~~~~~vIlnK~D~~~ 254 (411)
.+.++++.+.||||||... +..++.... ..+|.+++|+|+..|... ........ ..++ ..+++||+|...
T Consensus 58 ~v~~~~~kinlIDTPGh~D----F~~ev~~~l--~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~ 130 (594)
T TIGR01394 58 AIRYNGTKINIVDTPGHAD----FGGEVERVL--GMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPS 130 (594)
T ss_pred EEEECCEEEEEEECCCHHH----HHHHHHHHH--HhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCC
Confidence 1224578899999999743 333333222 256999999999876321 12222222 2233 578999999743
Q ss_pred -ChhhHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCC----------CCHHHHHHHHHhhCCCC
Q 015221 255 -KGGGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM----------GDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 255 -~~g~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~----------Gdi~~L~e~i~~~~~~~ 314 (411)
+.....+.. .... ..|.. ++ ....|..++|+..|. | +..|++.+.+.++..
T Consensus 131 a~~~~v~~ei~~l~~------~~g~~-~e-~l~~pvl~~SA~~g~~~~~~~~~~~g-i~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 131 ARPDEVVDEVFDLFA------ELGAD-DE-QLDFPIVYASGRAGWASLDLDDPSDN-MAPLFDAIVRHVPAP 193 (594)
T ss_pred cCHHHHHHHHHHHHH------hhccc-cc-cccCcEEechhhcCcccccCcccccC-HHHHHHHHHHhCCCC
Confidence 222222211 1110 00110 00 011355667777774 5 999999999988643
No 238
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.79 E-value=6.1e-08 Score=91.15 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHh-ccCCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFK-QSVSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~-~~~~~~~vIlnK~D~~ 253 (411)
++.+.|+||||...... +.. .....+|.+++|+|+..|... ....+... ... +..+++||+|..
T Consensus 72 ~~~i~iiDTPG~~~f~~----~~~--~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~-p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSS----EVT--AALRLCDGALVVVDAVEGVCVQTETVLRQALKERV-KPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHH----HHH--HHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCC-CEEEEEECCCcc
Confidence 67889999999864332 221 222367999999999876322 22333322 233 467899999975
No 239
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.78 E-value=3.1e-08 Score=88.43 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.|+++|++||||||+++++. +.+- .+.+.|...+. ....+ . ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~------~~~~----~~~~~~t~~~~-------~~~~~-~-----------------~~~ 46 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFS------KDQF----PEVYVPTVFEN-------YVADI-E-----------------VDG 46 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCccccc-------eEEEE-E-----------------ECC
Confidence 458999999999999999988 3211 01111110000 00000 0 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HH-H-HHHHHhc--cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AF-D-QAQAFKQ--SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~-~-~a~~f~~--~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.++||||..... .+.. .....+|.+++|.|.+.... .. . ....+.. ...+..+|.||+|....
T Consensus 47 ~~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 47 KQVELALWDTAGQEDYD-----RLRP-LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 120 (175)
T ss_pred EEEEEEEEeCCCchhhh-----hccc-cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccC
Confidence 24678999999964211 1111 11236788888888764321 11 1 1122221 12246789999997543
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
....-........++.. ..|+.+..-....+...+|++.|.| ++++++.+.+.
T Consensus 121 ~~~~~~i~~~~~~~v~~-~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~ 173 (175)
T cd01870 121 EHTRRELAKMKQEPVKP-EEGRDMANKIGAFGYMECSAKTKEG-VREVFEMATRA 173 (175)
T ss_pred hhhhhhhhhccCCCccH-HHHHHHHHHcCCcEEEEeccccCcC-HHHHHHHHHHH
Confidence 21111111111111110 1112221111122446699999999 99999988754
No 240
>PRK00007 elongation factor G; Reviewed
Probab=98.78 E-value=6.3e-08 Score=105.52 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=68.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
-+.|+++|.+|+|||||+++|..+.... .+..-++....... +...+ ...++.+.... ..+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~g~v~~~~~~~D-~~~~E---~~rg~ti~~~~-------------~~~~ 71 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVN-HKIGEVHDGAATMD-WMEQE---QERGITITSAA-------------TTCF 71 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCc-cccccccCCcccCC-CCHHH---HhCCCCEeccE-------------EEEE
Confidence 4679999999999999999998543221 01111111000000 00000 11122111100 1123
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
+.++.+.+|||||... ++.++. ......|.+++|+|+..|... ...+....+.-.+..+++||+|...
T Consensus 72 ~~~~~~~liDTPG~~~----f~~ev~--~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 72 WKDHRINIIDTPGHVD----FTIEVE--RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred ECCeEEEEEeCCCcHH----HHHHHH--HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 4578999999999742 222332 222345899999999877322 2233333222223578999999864
No 241
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.78 E-value=9e-08 Score=102.31 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhccCCceEEEEeCCCCCCC-hhh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQSVSVGAVIVTKMDGHAK-GGG 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~~~~~~vIlnK~D~~~~-~g~ 258 (411)
.+.+.|+||||..... .++.. ....+|.+++|+|++.+..... ........+ +..+|+||+|.... ...
T Consensus 69 ~~~l~liDTPG~~dF~----~~v~~--~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~i-piIiViNKiDl~~~~~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFS----YEVSR--SLAACEGALLLVDAAQGIEAQTLANVYLALENDL-EIIPVINKIDLPSADPER 141 (595)
T ss_pred EEEEEEEECCCcHHHH----HHHHH--HHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCC-CEEEEEECcCCCccCHHH
Confidence 3778999999986432 22222 2235799999999987632221 112222333 46789999998432 111
Q ss_pred HH-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 259 AL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 259 ~l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.. .+....+.+ +.+..++|+..|.| ++.|++.+.+.++.
T Consensus 142 ~~~el~~~lg~~---------------~~~vi~vSAktG~G-I~~Lle~I~~~lp~ 181 (595)
T TIGR01393 142 VKKEIEEVIGLD---------------ASEAILASAKTGIG-IEEILEAIVKRVPP 181 (595)
T ss_pred HHHHHHHHhCCC---------------cceEEEeeccCCCC-HHHHHHHHHHhCCC
Confidence 11 111111211 12346789999999 99999999988853
No 242
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.78 E-value=4.3e-08 Score=86.51 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhcc--CCceEEEEeCCCCCCChh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~~--~~~~~vIlnK~D~~~~~g 257 (411)
.+.+.+.||||..... .+.. .....+|.+++|.|.+...... .....+... ..+..+|.||+|......
T Consensus 51 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (164)
T cd04101 51 TVELFIFDSAGQELYS-----DMVS-NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAE 124 (164)
T ss_pred EEEEEEEECCCHHHHH-----HHHH-HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 4678999999953221 1211 1123689999999997543221 112222211 235688899999854321
Q ss_pred hH----HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 GA----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ~~----l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ....... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~------------------~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (164)
T cd04101 125 VTDAQAQAFAQAN------------------QLKFFKTSALRGVG-YEEPFESLARAF 163 (164)
T ss_pred CCHHHHHHHHHHc------------------CCeEEEEeCCCCCC-hHHHHHHHHHHh
Confidence 10 0111111 12334589999999 999998887653
No 243
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.77 E-value=1.4e-07 Score=83.66 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=57.8
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HH---HHHHhc---cCCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQ---AQAFKQ---SVSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~---a~~f~~---~~~~~~vIlnK~D~~ 253 (411)
.+.+.++||||..... .+.. .....++.+++|.|.+...... .. ...... .-.+..+|.||+|..
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 48 ICTLQITDTTGSHQFP-----AMQR-LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEEEECCCCCcch-----HHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 4677899999975432 1211 1123678899999987653221 11 122211 112467899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.......... .... ..+ .+-..+|+..|.| ++.+++.+.+.
T Consensus 122 ~~~~v~~~~~-------------~~~~--~~~~~~~~e~SA~~g~~-v~~~f~~l~~~ 163 (165)
T cd04140 122 HKREVSSNEG-------------AACA--TEWNCAFMETSAKTNHN-VQELFQELLNL 163 (165)
T ss_pred ccCeecHHHH-------------HHHH--HHhCCcEEEeecCCCCC-HHHHHHHHHhc
Confidence 4210000000 0000 001 1224589999999 99999987643
No 244
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.77 E-value=1.7e-07 Score=102.19 Aligned_cols=129 Identities=19% Similarity=0.144 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc-CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~-D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
-+.|+++|.+|+|||||+++|....... .++.-++. +.++ +.+. .....++.+... ...+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~~~~----D~~~-~e~~rgiti~~~-------------~~~~ 70 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGAATM----DWME-QEKERGITITSA-------------ATTV 70 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCcccc----CCCH-HHHhcCCCEecc-------------eEEE
Confidence 4679999999999999999998432211 01100110 0000 0000 000111211100 0122
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
..+++.+.++||||...... +.. ......|.+++|+|+..|... ..........-.+..+++||+|...
T Consensus 71 ~~~~~~i~liDTPG~~~~~~----~~~--~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 71 FWKGHRINIIDTPGHVDFTV----EVE--RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTG 141 (689)
T ss_pred EECCeEEEEEECCCCcchhH----HHH--HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 34578999999999864322 221 122345999999999876322 2233333222234578999999854
No 245
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.77 E-value=2.5e-08 Score=106.35 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=87.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
+|+++|.+|+||||++++|. |.. .|.+-. ....++..-.... .+...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt------g~~-----~d~~~e---------E~~rGiTid~~~~-------------~~~~~ 48 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT------GIA-----ADRLPE---------EKKRGMTIDLGFA-------------YFPLP 48 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh------Ccc-----CcCChh---------HhcCCceEEeEEE-------------EEEeC
Confidence 58999999999999999998 643 222100 0011111000000 01122
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCCChhhH
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~~ 259 (411)
++.+.|+||||.. .+...+ +.....+|.+++|+|++.|. ...+....+.. .++...+|+||+|........
T Consensus 49 ~~~v~~iDtPGhe----~f~~~~--~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~ 122 (581)
T TIGR00475 49 DYRLGFIDVPGHE----KFISNA--IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIK 122 (581)
T ss_pred CEEEEEEECCCHH----HHHHHH--HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHH
Confidence 4678999999953 232222 23345789999999998752 22222222221 233367889999986532110
Q ss_pred --HHHHHhcCCCeEEecccccccc--cccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 260 --LSAVAATKSPVIFIGTGEHMDE--FEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 260 --l~~~~~~g~Pi~fi~~Ge~i~~--l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... +.+.. +....|..++|+..|.| ++.+.+.+.+.+
T Consensus 123 ~~~~ei~------------~~l~~~~~~~~~~ii~vSA~tG~G-I~eL~~~L~~l~ 165 (581)
T TIGR00475 123 RTEMFMK------------QILNSYIFLKNAKIFKTSAKTGQG-IGELKKELKNLL 165 (581)
T ss_pred HHHHHHH------------HHHHHhCCCCCCcEEEEeCCCCCC-chhHHHHHHHHH
Confidence 11111 00000 11124567789999999 999888877665
No 246
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.77 E-value=2e-07 Score=89.58 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=81.5
Q ss_pred CeEEEEE-cCCCCcHHHHHHHH-HHHHHHcCCCceEeccCcCcchH-------------HHHHHHh---------hhhcC
Q 015221 101 PSVIMFV-GLQGSGKTTTCTKY-AYYHQKKGWKPALVCADTFRAGA-------------FDQLKQN---------ATKAK 156 (411)
Q Consensus 101 ~~vI~lv-G~~GvGKTTl~~kL-a~~l~~~g~kv~lV~~D~~r~~a-------------~~qL~~~---------~~~~~ 156 (411)
.++|+++ |.-|+||||++++| +..++.+|++|+++|+|+..+.. .+-|... +...|
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCC
Confidence 4678887 88899999999999 44555567777999999844332 2222221 11244
Q ss_pred cceeccCCCCCh-----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhH
Q 015221 157 IPFYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (411)
Q Consensus 157 v~~~~~~~~~d~-----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~ 229 (411)
+.+.+....... .+.....+..+. ..+||+|+|||+-...+. +.....+|.+++|..+... .++
T Consensus 82 l~vipg~~~~~~~~~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~--------~~~~~~sd~~viVt~pe~~si~~A 152 (262)
T COG0455 82 LYVLPGGSGLEDLAKLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDT--------LSFILSSDELVIVTTPEPTSITDA 152 (262)
T ss_pred EEEeeCCCChHHHhhcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHH--------HHHHHhcCcEEEEeCCCcchHHHH
Confidence 444433222111 111222333333 356999999977654331 1222344888888776432 334
Q ss_pred HHHHHHHh-ccCCceE--EEEeCCCCCCC
Q 015221 230 FDQAQAFK-QSVSVGA--VIVTKMDGHAK 255 (411)
Q Consensus 230 ~~~a~~f~-~~~~~~~--vIlnK~D~~~~ 255 (411)
....+... ......+ +|+|+++....
T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~~~~e 181 (262)
T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVRSTKE 181 (262)
T ss_pred HHHHHHHHHcCCccccceEEEEecccccc
Confidence 33333222 2233345 99999985433
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.76 E-value=3.5e-08 Score=101.03 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=41.6
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.+++.+.|+||||.. .+...+. .....+|.+++|+|+..|... .+....... ..+...+++||+|...
T Consensus 77 ~~~~~~~liDtPGh~----~f~~~~~--~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 77 TDKRKFIVADTPGHE----QYTRNMA--TGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred cCCeEEEEEeCCCHH----HHHHHHH--HHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 356789999999953 3333332 233477999999999876321 111221111 2333567899999864
No 248
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.76 E-value=8.5e-08 Score=87.58 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|+||||..... .+. ......+|.+++|+|++..... ......+.+ .-.+..+|.||+|.....
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~~~-~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 49 KVKLQIWDTAGQERFR-----SVT-HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred EEEEEEEeCCCcHHHH-----Hhh-HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 3578899999953111 111 1122367999999999754221 111222221 122467889999984321
Q ss_pred ----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 257 ----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
..........+ .|-..+|+..|.| ++.+++.+.+.+.
T Consensus 123 ~~~~~~~~~l~~~~~------------------~~~~e~Sa~~~~~-v~~l~~~l~~~~~ 163 (191)
T cd04112 123 VVKREDGERLAKEYG------------------VPFMETSAKTGLN-VELAFTAVAKELK 163 (191)
T ss_pred ccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 01111111111 2345679999999 9999999987763
No 249
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.76 E-value=8.3e-08 Score=102.88 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
+|+++|..++||||++++|. |.+ .|.+.. ..+.++.+........ ..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt------g~~-----~dr~~e---------E~~rGiTI~l~~~~~~------------~~~ 49 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT------GVN-----ADRLPE---------EKKRGMTIDLGYAYWP------------QPD 49 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCC-----Cccchh---------cccCCceEEeeeEEEe------------cCC
Confidence 68999999999999999998 642 222110 0011121100000000 012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCCChhh-
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG- 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~- 258 (411)
+..+.||||||.. .+...+ +.....+|.+++|+|+..|. ...+....... ..+...+|+||+|.......
T Consensus 50 g~~i~~IDtPGhe----~fi~~m--~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~ 123 (614)
T PRK10512 50 GRVLGFIDVPGHE----KFLSNM--LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIA 123 (614)
T ss_pred CcEEEEEECCCHH----HHHHHH--HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHH
Confidence 4557899999963 333333 23344679999999998752 22222222222 12334689999998643111
Q ss_pred -HHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 259 -ALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 259 -~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
...... +.+.... ...|..++|+..|.| ++.|++.+.+...
T Consensus 124 ~v~~ei~------------~~l~~~~~~~~~ii~VSA~tG~g-I~~L~~~L~~~~~ 166 (614)
T PRK10512 124 EVRRQVK------------AVLREYGFAEAKLFVTAATEGRG-IDALREHLLQLPE 166 (614)
T ss_pred HHHHHHH------------HHHHhcCCCCCcEEEEeCCCCCC-CHHHHHHHHHhhc
Confidence 111111 0000000 124667799999999 9999999987653
No 250
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.75 E-value=6.4e-08 Score=89.12 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. +.+.. +.+.+. .++.+...... ...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~~-------------~~~ 52 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFA------DNTFS----GSYITT-----------IGVDFKIRTVE-------------ING 52 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCC----CCcCcc-----------ccceeEEEEEE-------------ECC
Confidence 569999999999999999998 43321 111110 11111100000 000
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhcc--CCceEEEEeCCCCCCCh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~--~~~~~vIlnK~D~~~~~ 256 (411)
..+.+.|+||||..... .+. -.....++.+++|+|++....... ....+... ..+..+|.||+|.....
T Consensus 53 ~~~~l~l~D~~G~~~~~-----~~~-~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 53 ERVKLQIWDTAGQERFR-----TIT-STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEEeCCCchhHH-----HHH-HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 13567899999963221 111 112235788999999975432211 22222221 23457889999985431
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
........ ...... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 127 ~~~~~~~~-------------~~~~~~-~~~~~e~Sa~~~~g-i~~lf~~l~~~~ 166 (199)
T cd04110 127 VVETEDAY-------------KFAGQM-GISLFETSAKENIN-VEEMFNCITELV 166 (199)
T ss_pred ccCHHHHH-------------HHHHHc-CCEEEEEECCCCcC-HHHHHHHHHHHH
Confidence 11111000 000000 12335589999999 999999887765
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.75 E-value=6.6e-08 Score=101.83 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc-CcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~-~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
+.+.|+++|.+|+||||++.+|..+...- .+..-|..+. .+....+- .......++.+.... ..
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i-~~~g~v~~~g~~~~t~~D~-~~~E~~rgisi~~~~-------------~~ 74 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAI-QTAGAVKGRGSQRHAKSDW-MEMEKQRGISITTSV-------------MQ 74 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCc-cccceeccccccccccCCC-CHHHHhcCCcEEEEE-------------EE
Confidence 34679999999999999999997542110 1111222110 00000000 011111222221110 01
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
+..+++.+.|+||||... +..+... ....+|.+++|+|++.+... ............+..+++||+|...
T Consensus 75 ~~~~~~~inliDTPG~~d----f~~~~~~--~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 75 FPYRDCLVNLLDTPGHED----FSEDTYR--TLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred EeeCCeEEEEEECCChhh----HHHHHHH--HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 223578999999999842 2222211 22357999999999876322 1222222222235688999999853
No 252
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.75 E-value=5.6e-08 Score=89.51 Aligned_cols=105 Identities=12% Similarity=-0.027 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH---HHHHhc-------cCCceEEEEeCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQ-------SVSVGAVIVTKMDG 252 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~---a~~f~~-------~~~~~~vIlnK~D~ 252 (411)
.+.+.|.||||..... .+.. .....++.+++|.|.+........ ...+.. .-.+..+|.||+|.
T Consensus 49 ~~~l~l~Dt~G~~~~~-----~~~~-~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 49 VVRLQLWDIAGQERFG-----GMTR-VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred EEEEEEEECCCchhhh-----hhHH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 4678899999973221 1111 112367999999998754321111 111111 11246889999998
Q ss_pred CCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .......... .+.+...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sak~~~~-v~e~f~~l~~~l 167 (201)
T cd04107 123 KKRLAKDGEQMDQFCKEN-----------------GFIGWFETSAKEGIN-IEEAMRFLVKNI 167 (201)
T ss_pred ccccccCHHHHHHHHHHc-----------------CCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 5211 1111111111 123345689999999 999999888765
No 253
>PRK10218 GTP-binding protein; Provisional
Probab=98.75 E-value=7.6e-08 Score=102.73 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=91.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---HcCC-CceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW-KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~---~~g~-kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l 176 (411)
.+.|+++|..|+|||||+.+|..... +.+. +-.+.|.++ .....++.+.....
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~-----------~E~erGiTi~~~~~------------ 61 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSND-----------LEKERGITILAKNT------------ 61 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeecccc-----------ccccCceEEEEEEE------------
Confidence 46799999999999999999984211 1000 001111110 01112222221100
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHH-HhccCCceEEEEeCCCCC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQA-FKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~-f~~~~~~~~vIlnK~D~~ 253 (411)
.+..+++.+.++||||...... ++.. ....+|.+++|+|+..|... ...... ....++ ..+++||+|..
T Consensus 62 -~i~~~~~~inliDTPG~~df~~----~v~~--~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~ 133 (607)
T PRK10218 62 -AIKWNDYRINIVDTPGHADFGG----EVER--VMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRP 133 (607)
T ss_pred -EEecCCEEEEEEECCCcchhHH----HHHH--HHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCC
Confidence 1123478899999999764332 2222 22357999999999876321 112222 222333 47899999974
Q ss_pred C-ChhhHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCC---------CHHHHHHHHHhhCCC
Q 015221 254 A-KGGGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG---------DWSGFMDKIHEVVPM 313 (411)
Q Consensus 254 ~-~~g~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~G---------di~~L~e~i~~~~~~ 313 (411)
. +....+... ..... + + ..+-..-.|..++|+..|.+ ++..|++.+.++++.
T Consensus 134 ~a~~~~vl~ei~~l~~~-l-----~--~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 134 GARPDWVVDQVFDLFVN-L-----D--ATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred CCchhHHHHHHHHHHhc-c-----C--ccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 3 332332222 11100 0 0 00000113556677777763 388999999998863
No 254
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.75 E-value=5.3e-08 Score=86.11 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|.||||...... +... .....|.+++|.|.+.... ..+....+.. .-.+..+|.||+|....
T Consensus 48 ~~~l~i~Dt~G~~~~~~-----~~~~-~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 48 QCMLEILDTAGTEQFTA-----MRDL-YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred EEEEEEEECCCcccchh-----HHHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 45667999999743221 1111 1235688999999864422 1112222211 11346889999998543
Q ss_pred hhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
........ +.+ ..+ ..+...+|+..|.| ++++++.+.+.+
T Consensus 122 ~~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~~-v~~~~~~l~~~l 162 (164)
T cd04175 122 RVVGKEQG-------------QNLARQW--GCAFLETSAKAKIN-VNEIFYDLVRQI 162 (164)
T ss_pred cEEcHHHH-------------HHHHHHh--CCEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 11100000 001 001 12345689999999 999999887654
No 255
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.75 E-value=1.1e-07 Score=75.76 Aligned_cols=71 Identities=30% Similarity=0.313 Sum_probs=55.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
++++.|.+|+||||++.+|+..+++.|+++++++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 3678899999999999999999999999999887
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 226 (411)
|++++|++|........ .......+|.+++++++...
T Consensus 35 --d~iivD~~~~~~~~~~~-----~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 --DYVLIDTPPGLGLLVLL-----CLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred --CEEEEeCCCCccchhhh-----hhhhhhhCCEEEEecCCchh
Confidence 67999999986543211 01222356888899888643
No 256
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.74 E-value=3.7e-08 Score=88.46 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=59.0
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc----cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~----~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|+||||.... ..+.. .....+|.+++|.|++......+ ....+.. .-.+..+|.||+|....
T Consensus 62 ~~~~~i~Dt~G~~~~-----~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 62 RIHLQLWDTAGQERF-----RSLTT-AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQ 135 (180)
T ss_pred EEEEEEEeCCChHHH-----HHHHH-HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhc
Confidence 367889999995321 11211 12236799999999976432222 2222221 12346789999998532
Q ss_pred hh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.. .+.......+ .|...+|+..|.| ++++++.+.+.
T Consensus 136 ~~v~~~~~~~~~~~~~------------------~~~~e~Sak~~~~-v~~l~~~l~~~ 175 (180)
T cd04127 136 RQVSEEQAKALADKYG------------------IPYFETSAATGTN-VEKAVERLLDL 175 (180)
T ss_pred CccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHH
Confidence 11 1111111111 2345689999999 99999988654
No 257
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.74 E-value=5.2e-08 Score=90.85 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||++++|. +... ...|.| ..++.++.....-+ ...
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~------~~~~----~~~~~~-----------T~~~d~~~~~i~~~------------~~~ 48 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFA------KEGF----GKSYKQ-----------TIGLDFFSKRVTLP------------GNL 48 (215)
T ss_pred EEEEECcCCCCHHHHHHHHh------cCCC----CCCCCC-----------ceeEEEEEEEEEeC------------CCC
Confidence 48999999999999999998 3221 001111 01111111000000 001
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhcc------CCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS------VSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~------~~~~~vIlnK~D~~ 253 (411)
.+.+.|.||||..... .+.. .....+|.+++|+|.+....... ....+.+. ..+..+|.||+|+.
T Consensus 49 ~~~~~i~Dt~G~~~~~-----~l~~-~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGG-----KMLD-KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHH-----HHHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 3677899999963211 1211 11337899999999875422111 11222211 12457789999985
Q ss_pred CChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .........+ .+...+|++.|.| ++.+++.+.+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~------------------~~~~~iSAktg~g-v~~lf~~l~~~l 165 (215)
T cd04109 123 HNRTVKDDKHARFAQANG------------------MESCLVSAKTGDR-VNLLFQQLAAEL 165 (215)
T ss_pred cccccCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3210 1111111111 1335589999999 999999887765
No 258
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.74 E-value=3.8e-08 Score=83.38 Aligned_cols=105 Identities=13% Similarity=-0.026 Sum_probs=59.8
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHH-------HHHhccCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------QAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a-------~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
++++.++||||........ ......+|.+++|+|++.+....... ........+..+|+||+|....
T Consensus 44 ~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR------RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred EEEEEEEecCChHHHHhHH------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 5788999999975332211 12234678999999998764322211 1122223456889999998654
Q ss_pred hhhHHHH-HHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 256 GGGALSA-VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 256 ~g~~l~~-~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
....... .. ........+...+|+..|.| +..+++++.
T Consensus 118 ~~~~~~~~~~--------------~~~~~~~~~~~~~s~~~~~~-i~~~~~~l~ 156 (157)
T cd00882 118 RVVSEEELAE--------------QLAKELGVPYFETSAKTGEN-VEELFEELA 156 (157)
T ss_pred cchHHHHHHH--------------HHHhhcCCcEEEEecCCCCC-hHHHHHHHh
Confidence 3222110 00 00011123445678888888 888888764
No 259
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.73 E-value=7.4e-08 Score=87.91 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=57.2
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHH---hc---cCCceEEEEeCCCCCC
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF---KQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f---~~---~~~~~~vIlnK~D~~~ 254 (411)
+.+.|+||||..... .+.. .....+|.+++|.|.+..... ......+ .. .-.+..+|.||+|...
T Consensus 47 ~~l~i~Dt~G~~~~~-----~~~~-~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 47 CMLEVLDTAGQEEYT-----ALRD-QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred EEEEEEECCCchhhH-----HHHH-HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 457889999964221 1111 112367999999998754321 1122222 11 1124578899999843
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ....... .+. .+-..+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~v~~~~~~~~~~----------------~~~--~~~~e~SAk~~~~-v~~l~~~l~~~l 162 (190)
T cd04144 121 EREVSTEEGAALAR----------------RLG--CEFIEASAKTNVN-VERAFYTLVRAL 162 (190)
T ss_pred cCccCHHHHHHHHH----------------HhC--CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 211 0111111 111 1335589999999 999999887654
No 260
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.73 E-value=7.5e-08 Score=84.65 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=57.0
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhcc--CCceEEEEeCCCCCCChh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~~--~~~~~vIlnK~D~~~~~g 257 (411)
.+.+.|+||||..... .+.. .....+|.+++|.|++...... .....+... -.+..+|.||+|......
T Consensus 50 ~~~~~i~D~~G~~~~~-----~~~~-~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 123 (162)
T cd04106 50 DVRLMLWDTAGQEEFD-----AITK-AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAV 123 (162)
T ss_pred EEEEEEeeCCchHHHH-----HhHH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccC
Confidence 4678999999953211 1111 1223678999999987543211 112222211 124578899999854321
Q ss_pred h----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 258 G----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 258 ~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
. +.......+. |...+|+..|.| ++.+++.+.+
T Consensus 124 v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~l~~ 160 (162)
T cd04106 124 ITNEEAEALAKRLQL------------------PLFRTSVKDDFN-VTELFEYLAE 160 (162)
T ss_pred CCHHHHHHHHHHcCC------------------eEEEEECCCCCC-HHHHHHHHHH
Confidence 1 1111221121 334578888888 9988887754
No 261
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.73 E-value=4.3e-08 Score=87.83 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=61.2
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCCCChh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~~~~g 257 (411)
+.+.++||||..... .++.. ....+|.+++|.|.+......+ ....+.. .-.+..+|.||+|+....+
T Consensus 48 ~~~~i~Dt~G~~~~~-----~~~~~-~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 48 VRLQLCDTAGQDEFD-----KLRPL-CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred EEEEEEECCCChhhc-----ccccc-ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 567899999974221 11111 2236799999999875422111 1222222 1234688999999865543
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
...........++.. ..++....-....+...+|++.|.| ++.+++++.
T Consensus 122 ~~~~~~~~~~~~v~~-~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~lf~~~~ 170 (173)
T cd04130 122 VLIQLARYGEKPVSQ-SRAKALAEKIGACEYIECSALTQKN-LKEVFDTAI 170 (173)
T ss_pred HHHHHhhcCCCCcCH-HHHHHHHHHhCCCeEEEEeCCCCCC-HHHHHHHHH
Confidence 322222211112110 0001111101122345689999999 999998764
No 262
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.72 E-value=3.9e-08 Score=88.09 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...++++|.+||||||+++++. +.+.. .+.|.|... ......... . .
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~------~~~f~---~~~~~~T~~-------~~~~~~~~~--~---------------~ 50 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFL------GRSFS---LNAYSPTIK-------PRYAVNTVE--V---------------Y 50 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHh------CCCCC---cccCCCccC-------cceEEEEEE--E---------------C
Confidence 3568999999999999999998 44321 111222100 000000000 0 0
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc-cCCceEEEEeCCCCCCCh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ-SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~-~~~~~~vIlnK~D~~~~~ 256 (411)
...+.+.+.||+|..... .+.. .....+|.+++|+|++....... ....+.. .-.+..+|.||+|.....
T Consensus 51 ~~~~~l~~~d~~g~~~~~-----~~~~-~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 51 GQEKYLILREVGEDEVAI-----LLND-AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred CeEEEEEEEecCCccccc-----ccch-hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccc
Confidence 112456788999864321 1111 11246799999999976533222 2222211 123578899999984321
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... ..+.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~-------------~~~~~~~~~~~~~~~~~Sa~~~~~-v~~lf~~l~~~~ 165 (169)
T cd01892 125 QRYEV-------------QPDEFCRKLGLPPPLHFSSKLGDS-SNELFTKLATAA 165 (169)
T ss_pred ccccc-------------CHHHHHHHcCCCCCEEEEeccCcc-HHHHHHHHHHHh
Confidence 00000 001111111122235689999999 999999887754
No 263
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.72 E-value=7.8e-08 Score=85.83 Aligned_cols=106 Identities=10% Similarity=-0.020 Sum_probs=59.5
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhcc--CCceEEEEeCCCCCCChh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~--~~~~~vIlnK~D~~~~~g 257 (411)
.+.+.+.||||..... .+.. .....+|.+++|+|.+.+..... ....+... -.+..+|.||+|+..+.-
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~ 121 (166)
T cd00877 48 KIRFNVWDTAGQEKFG-----GLRD-GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV 121 (166)
T ss_pred EEEEEEEECCCChhhc-----cccH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC
Confidence 4678899999974321 1111 11236799999999986532221 11222111 134578899999853210
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... . ... ....+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~~~-~--------------~~~-~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 158 (166)
T cd00877 122 KAKQI-T--------------FHR-KKNLQYYEISAKSNYN-FEKPFLWLARKL 158 (166)
T ss_pred CHHHH-H--------------HHH-HcCCEEEEEeCCCCCC-hHHHHHHHHHHH
Confidence 00000 0 000 0112334589999999 999999987655
No 264
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.72 E-value=6.3e-08 Score=103.55 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH---cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK---KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~---~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
.+.++++|..++|||||+.+|...... .+..-.+.+. +. .....++.+......-. . .
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~----------~~-~ErerGiTi~~~~v~~~-----~---~ 67 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDS----------MD-LERERGITIKAQAVRLN-----Y---K 67 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccC----------ch-HHhhcCCcccccEEEEE-----E---E
Confidence 356999999999999999999843211 1111111111 00 01111222111000000 0 0
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH--HHH-HHhccCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQ-AFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~--~a~-~f~~~~~~~~vIlnK~D~~~ 254 (411)
.....++.+.|+||||..... .++... ...+|.+++|+|++.+..... ... .....+ +..+|+||+|...
T Consensus 68 ~~dg~~~~lnLiDTPGh~dF~----~~v~~s--l~~aD~aILVVDas~gv~~qt~~~~~~~~~~~l-piIvViNKiDl~~ 140 (600)
T PRK05433 68 AKDGETYILNLIDTPGHVDFS----YEVSRS--LAACEGALLVVDASQGVEAQTLANVYLALENDL-EIIPVLNKIDLPA 140 (600)
T ss_pred ccCCCcEEEEEEECCCcHHHH----HHHHHH--HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCc
Confidence 001125788999999986432 223222 225689999999987632221 222 222233 3678999999753
Q ss_pred C-hhhHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 255 K-GGGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 255 ~-~g~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
. ........ ...+.+ ..+..++|+..|.| ++.|++.+.+.++.
T Consensus 141 a~~~~v~~ei~~~lg~~---------------~~~vi~iSAktG~G-I~~Ll~~I~~~lp~ 185 (600)
T PRK05433 141 ADPERVKQEIEDVIGID---------------ASDAVLVSAKTGIG-IEEVLEAIVERIPP 185 (600)
T ss_pred ccHHHHHHHHHHHhCCC---------------cceEEEEecCCCCC-HHHHHHHHHHhCcc
Confidence 2 11111111 111211 11246789999999 99999999888753
No 265
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.72 E-value=3e-08 Score=97.82 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.++++++|..||||||+++++|.+++..|++|++|+.||
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 468999999999999999999999999999999999998
No 266
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.72 E-value=1.2e-07 Score=85.82 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=59.6
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHH---hccCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAF---KQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f---~~~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+. ...+ ... .+..+|.||.|+...
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~piilv~nK~Dl~~~ 120 (187)
T cd04132 48 IIELALWDTAGQEEYD-----RLRP-LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPG-TPIMLVGLKTDLRKD 120 (187)
T ss_pred EEEEEEEECCCchhHH-----HHHH-HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC-CCEEEEEeChhhhhC
Confidence 3578899999963211 1211 123468999999998754322111 1111 122 245788999997432
Q ss_pred h--------hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 G--------GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~--------g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ..+.......+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 121 ~~~~~~v~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 166 (187)
T cd04132 121 KNLDRKVTPAQAESVAKKQG-----------------AFAYLECSAKTMEN-VEEVFDTAIEEA 166 (187)
T ss_pred ccccCCcCHHHHHHHHHHcC-----------------CcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 1 01111111111 11345689999999 999999888776
No 267
>PTZ00369 Ras-like protein; Provisional
Probab=98.70 E-value=1.7e-07 Score=85.50 Aligned_cols=150 Identities=14% Similarity=0.087 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++++ +.+. .+.+.|..... + ...+.+ ..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~------~~~~----~~~~~~t~~~~---~--~~~~~~--------------------~~ 50 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFI------QNHF----IDEYDPTIEDS---Y--RKQCVI--------------------DE 50 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCC----CcCcCCchhhE---E--EEEEEE--------------------CC
Confidence 468999999999999999998 3221 01111110000 0 000000 01
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhcc----CCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQS----VSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~----~~~~~vIlnK~D~~~ 254 (411)
..+.+.|+||||...... +.. .....++.+++|+|.+.... .......+... -.+..+|.||+|...
T Consensus 51 ~~~~l~i~Dt~G~~~~~~-----l~~-~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 51 ETCLLDILDTAGQEEYSA-----MRD-QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred EEEEEEEEeCCCCccchh-----hHH-HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 135577899999754321 111 11226789999999876532 11112222211 124578899999743
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .|...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~i~~~~~~~~~~~~~------------------~~~~e~Sak~~~g-i~~~~~~l~~~l 166 (189)
T PTZ00369 125 ERQVSTGEGQELAKSFG------------------IPFLETSAKQRVN-VDEAFYELVREI 166 (189)
T ss_pred ccccCHHHHHHHHHHhC------------------CEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 210 0111111111 2345689999999 999888887665
No 268
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.70 E-value=8.3e-08 Score=87.22 Aligned_cols=150 Identities=12% Similarity=0.058 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||+++++. +.+.... +.+ ..+..+...... ....
T Consensus 2 ki~v~G~~~vGKSsli~~~~------~~~~~~~----~~~-----------t~~~~~~~~~~~-------------~~~~ 47 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFT------EDEFSES----TKS-----------TIGVDFKIKTVY-------------IENK 47 (188)
T ss_pred EEEEECCCCCCHHHHHHHHh------cCCCCCC----CCC-----------ceeeEEEEEEEE-------------ECCE
Confidence 48999999999999999998 4332110 000 001111000000 0011
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH---H---HHHhccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---A---QAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~---a---~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.+.||||..... .+. ......+|.+++|+|.+........ . ..+.....+..+|.||.|.....
T Consensus 48 ~~~~~i~Dt~g~~~~~-----~~~-~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 48 IIKLQIWDTNGQERFR-----SLN-NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred EEEEEEEECCCcHHHH-----hhH-HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 3667899999953211 111 1122367999999999765322211 1 12211123468889999975321
Q ss_pred h----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 122 ~v~~~~~~~~~~~~~------------------~~~~evSa~~~~~-i~~~f~~l~~~~ 161 (188)
T cd04125 122 VVDSNIAKSFCDSLN------------------IPFFETSAKQSIN-VEEAFILLVKLI 161 (188)
T ss_pred cCCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0 1111111111 1345588899998 988888776654
No 269
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.70 E-value=1.5e-07 Score=83.00 Aligned_cols=106 Identities=15% Similarity=0.015 Sum_probs=57.9
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.|.||||...... +... ....+|.+++|.|.+.... .......+.. .-.+..+|.||+|.....
T Consensus 49 ~~l~i~Dt~G~~~~~~-----~~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~ 122 (163)
T cd04176 49 SVLEILDTAGTEQFAS-----MRDL-YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER 122 (163)
T ss_pred EEEEEEECCCcccccc-----hHHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence 4567899999643221 1111 1236789999999876432 2222222221 113467889999974321
Q ss_pred hhHHHHHHhcCCCeEEeccccccc-ccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
....... +.+. .+ ..|...+|+..|.| +.++++.+.+.+
T Consensus 123 ~~~~~~~-------------~~~~~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~l 162 (163)
T cd04176 123 EVSSAEG-------------RALAEEW--GCPFMETSAKSKTM-VNELFAEIVRQM 162 (163)
T ss_pred ccCHHHH-------------HHHHHHh--CCEEEEecCCCCCC-HHHHHHHHHHhc
Confidence 1100000 1110 11 12345689999999 999998887654
No 270
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.69 E-value=1.1e-07 Score=84.31 Aligned_cols=103 Identities=16% Similarity=-0.005 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHH---hccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAF---KQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f---~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||..... .+.. .....++.+++|.|.+...... ...... ...-.+..+|.||+|.....
T Consensus 50 ~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 50 KIKLQIWDTAGQERFR-----AVTR-SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQR 123 (166)
T ss_pred EEEEEEEECCCcHHHH-----HHHH-HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 4678899999963211 1111 1223679999999998643211 111111 11223467889999985431
Q ss_pred h----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
. .+....... ..+...+|+..|.| ++++++.+...
T Consensus 124 ~~~~~~~~~~~~~~------------------~~~~~e~Sa~~~~~-i~e~f~~l~~~ 162 (166)
T cd04122 124 DVTYEEAKQFADEN------------------GLLFLECSAKTGEN-VEDAFLETAKK 162 (166)
T ss_pred CcCHHHHHHHHHHc------------------CCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 1 111111111 12345589999999 99988776543
No 271
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.69 E-value=1.5e-07 Score=88.61 Aligned_cols=109 Identities=22% Similarity=0.259 Sum_probs=64.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcC-cceeccCCCCChHHHHHHHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK-IPFYGSYTESDPVRIAVEGV 176 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~-v~~~~~~~~~d~~~i~~~~l 176 (411)
..+|.+|+++|++|+||||+++.|...+.. ..+.. ..| +.+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~-----~~~~~----------------~~g~i~i~~--------------- 79 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTK-----QNISD----------------IKGPITVVT--------------- 79 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhccc-----Ccccc----------------ccccEEEEe---------------
Confidence 446788999999999999999999843211 01110 000 11110
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhcc-CCceEEEEeCCCCC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQS-VSVGAVIVTKMDGH 253 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~-~~~~~vIlnK~D~~ 253 (411)
..+..+.++||||.. . .+. .....+|.+++|+|++.+... ......+... .+...+|+||+|..
T Consensus 80 ----~~~~~i~~vDtPg~~---~----~~l--~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 80 ----GKKRRLTFIECPNDI---N----AMI--DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ----cCCceEEEEeCCchH---H----HHH--HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 125678999999853 1 221 122356999999999866332 2233333322 23334599999985
Q ss_pred CC
Q 015221 254 AK 255 (411)
Q Consensus 254 ~~ 255 (411)
..
T Consensus 147 ~~ 148 (225)
T cd01882 147 KK 148 (225)
T ss_pred Cc
Confidence 43
No 272
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.69 E-value=2.6e-07 Score=91.47 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec-------cCCCCChHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG-------SYTESDPVRIAV 173 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~-------~~~~~d~~~i~~ 173 (411)
.++.++.|.-||||||++++|... ..|++++++-+|.-..+--.++.... +.+++. +....+......
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~~ll~~~---~~~v~eL~~GCiCCs~~~~l~~~l~ 78 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQLIGDR---ATQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccHHHHhCc---CceEEEECCCEEEEccCchHHHHHH
Confidence 357889999999999999999854 35889999988865433322222111 111111 111233333333
Q ss_pred HHHHHHhc--CCCCEEEEeCCCCCcchHHHHHHH---HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC-CceEEEE
Q 015221 174 EGVETFKK--ENCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIV 247 (411)
Q Consensus 174 ~~l~~~~~--~~~d~viIDTaG~~~~~~~l~~el---~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~-~~~~vIl 247 (411)
+.+..... ..+|+|+|.|.|..... .+.+.+ ..+.....-+.++.|+|+.......+....+..++ .-+.+|+
T Consensus 79 ~l~~~~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Ivl 157 (318)
T PRK11537 79 DLLDNLDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILL 157 (318)
T ss_pred HHHHHHhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEEE
Confidence 33332222 15999999999997543 333332 12222334577999999975432222111111111 2368999
Q ss_pred eCCCCCCCh
Q 015221 248 TKMDGHAKG 256 (411)
Q Consensus 248 nK~D~~~~~ 256 (411)
||+|+....
T Consensus 158 nK~Dl~~~~ 166 (318)
T PRK11537 158 TKTDVAGEA 166 (318)
T ss_pred eccccCCHH
Confidence 999987643
No 273
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.68 E-value=1.3e-07 Score=85.51 Aligned_cols=153 Identities=20% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|++||||||++++|. ..+..-+.+ ..+..+.. +
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~------~~~~~~~~p----------------T~g~~~~~-----------------i 53 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLK------NGEISETIP----------------TIGFNIEE-----------------I 53 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHH------SSSEEEEEE----------------ESSEEEEE-----------------E
T ss_pred cEEEEEEECCCccchHHHHHHhh------hccccccCc----------------ccccccce-----------------e
Confidence 45679999999999999999997 332221111 01111111 1
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
...++.+.+.|.+|...... +. .. -...++.++||+|++.... +......+.. .-.+..+++||.|.
T Consensus 54 ~~~~~~~~~~d~gG~~~~~~-~w---~~--y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~ 127 (175)
T PF00025_consen 54 KYKGYSLTIWDLGGQESFRP-LW---KS--YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDL 127 (175)
T ss_dssp EETTEEEEEEEESSSGGGGG-GG---GG--GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTS
T ss_pred eeCcEEEEEEeccccccccc-cc---ee--eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccc
Confidence 12468899999999743221 10 00 1125689999999986432 2222222221 11356778999997
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccc--cCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE--VFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~--~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.... ....+....+ +.++. ........|+..|.| +.+.++++.+.
T Consensus 128 ~~~~-~~~~i~~~l~-----------l~~l~~~~~~~v~~~sa~~g~G-v~e~l~WL~~~ 174 (175)
T PF00025_consen 128 PDAM-SEEEIKEYLG-----------LEKLKNKRPWSVFSCSAKTGEG-VDEGLEWLIEQ 174 (175)
T ss_dssp TTSS-THHHHHHHTT-----------GGGTTSSSCEEEEEEBTTTTBT-HHHHHHHHHHH
T ss_pred cCcc-hhhHHHhhhh-----------hhhcccCCceEEEeeeccCCcC-HHHHHHHHHhc
Confidence 4421 1122222222 12222 111234579999999 99999988764
No 274
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.68 E-value=1.2e-07 Score=100.09 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++|+|||||+|.|. |+++..++. ++++ +++. ..+.. .
T Consensus 118 slrIvLVGKTGVGKSSLINSIL------Gekvf~vss--~~~~--------TTr~-~ei~~------------------~ 162 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIF------GEVKFSTDA--FGMG--------TTSV-QEIEG------------------L 162 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHh------ccccccccC--CCCC--------ceEE-EEEEE------------------E
Confidence 3569999999999999999999 887766643 2222 1111 11111 0
Q ss_pred cCCCCEEEEeCCCCCcch------HHHHHHHHHHHHhcCCCeeEEEeeCcch-h--hHHHHHHH----Hhcc-CCceEEE
Q 015221 181 KENCDLIIVDTSGRHKQE------AALFEEMRQVSEATNPDLVIFVMDSSIG-Q--AAFDQAQA----FKQS-VSVGAVI 246 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~------~~l~~el~~i~~~~~~d~vllVvda~~g-~--~~~~~a~~----f~~~-~~~~~vI 246 (411)
..+..+.||||||..... ..+..++........+|.+++|...... . ......+. |-+. ....+||
T Consensus 163 idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVV 242 (763)
T TIGR00993 163 VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVT 242 (763)
T ss_pred ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEE
Confidence 136788999999987542 1222222222233357888888764321 2 12222222 3322 2457899
Q ss_pred EeCCCCCC
Q 015221 247 VTKMDGHA 254 (411)
Q Consensus 247 lnK~D~~~ 254 (411)
+|++|...
T Consensus 243 FThgD~lp 250 (763)
T TIGR00993 243 LTHAASAP 250 (763)
T ss_pred EeCCccCC
Confidence 99999875
No 275
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.67 E-value=1.5e-07 Score=88.27 Aligned_cols=106 Identities=8% Similarity=-0.044 Sum_probs=59.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhc-CCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEAT-NPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~-~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
.+.+.|+||||.. . . +... ... .+|.+++|.|++..... ......+.. .-.+..+|.||+|...
T Consensus 49 ~~~l~i~Dt~G~~---~-~---~~~~-~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 49 ESTLVVIDHWEQE---M-W---TEDS-CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred EEEEEEEeCCCcc---h-H---HHhH-HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 4678999999985 1 1 1111 112 67999999999865321 111222221 1135688999999854
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... +....-. -.+...+|+..|.| ++.+++.+...+
T Consensus 121 ~~~v~~~~~-------------~~~a~~~-~~~~~e~SA~~~~g-v~~l~~~l~~~~ 162 (221)
T cd04148 121 SREVSVQEG-------------RACAVVF-DCKFIETSAGLQHN-VDELLEGIVRQI 162 (221)
T ss_pred cceecHHHH-------------HHHHHHc-CCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 311000000 0000000 01234589999999 999999887766
No 276
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=91.16 Aligned_cols=149 Identities=19% Similarity=0.292 Sum_probs=87.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC--cCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD--TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D--~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.+||.||+||||++++|. ..|..|.+.- |-|| ..+.-.| .
T Consensus 199 vGLVG~PNAGKSTLL~als------~AKpkVa~YaFTTL~P-----------~iG~v~y--------------------d 241 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALS------RAKPKVAHYAFTTLRP-----------HIGTVNY--------------------D 241 (366)
T ss_pred cceecCCCCcHHHHHHHhh------ccCCcccccceeeecc-----------ccceeec--------------------c
Confidence 6899999999999999999 6566554430 1111 0111101 0
Q ss_pred CCCCEEEEeCCCCCcch---HH-HHHHHHHHHHhcCCCeeEEEeeCcchh-----hH----HHHHHHHhccC--CceEEE
Q 015221 182 ENCDLIIVDTSGRHKQE---AA-LFEEMRQVSEATNPDLVIFVMDSSIGQ-----AA----FDQAQAFKQSV--SVGAVI 246 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~---~~-l~~el~~i~~~~~~d~vllVvda~~g~-----~~----~~~a~~f~~~~--~~~~vI 246 (411)
+.-++.+-|-||..... .. -.+.++.+. .+...+||+|.+.++ +. ......+.+.+ .+..+|
T Consensus 242 df~q~tVADiPGiI~GAh~nkGlG~~FLrHiE---R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liV 318 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGAHMNKGLGYKFLRHIE---RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIV 318 (366)
T ss_pred ccceeEeccCccccccccccCcccHHHHHHHH---hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEE
Confidence 12347899999975322 11 122333333 458899999998762 11 12233444433 467899
Q ss_pred EeCCCCCCChhhHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 247 VTKMDGHAKGGGALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 247 lnK~D~~~~~g~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
+||+|........++.+ ..+..| ....+|+.+|.| +..|++.+.+.
T Consensus 319 aNKiD~~eae~~~l~~L~~~lq~~-----------------~V~pvsA~~~eg-l~~ll~~lr~~ 365 (366)
T KOG1489|consen 319 ANKIDLPEAEKNLLSSLAKRLQNP-----------------HVVPVSAKSGEG-LEELLNGLREL 365 (366)
T ss_pred EeccCchhHHHHHHHHHHHHcCCC-----------------cEEEeeeccccc-hHHHHHHHhhc
Confidence 99999842211222322 222211 246789999999 99988877654
No 277
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.66 E-value=2.3e-07 Score=94.93 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhc-cCCceEEEEeCCCCCCChhh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~ 258 (411)
++.+.++||||.. .+...+ +.....+|.+++|+|++.+. ...+.+..+.. ..+...+++||+|.......
T Consensus 79 ~~~i~liDtPGh~----~f~~~~--~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 79 LRRVSFVDAPGHE----TLMATM--LSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred ccEEEEEECCCHH----HHHHHH--HHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHH
Confidence 4678999999963 333333 22233679999999998642 12222222221 12345778999998653211
Q ss_pred H--HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 259 A--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 259 ~--l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
. ...... +. ... .....|..++|+..|.| ++.|++.+...++
T Consensus 153 ~~~~~~i~~------~l---~~~--~~~~~~ii~vSA~~g~g-i~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 LENYEEIKE------FV---KGT--VAENAPIIPVSALHNAN-IDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHh------hh---hhc--ccCCCeEEEEECCCCCC-hHHHHHHHHHhCC
Confidence 1 111110 00 000 01123567799999999 9999999998765
No 278
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.66 E-value=3.9e-07 Score=81.12 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=56.2
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh----ccCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK----QSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~----~~~~~~~vIlnK~D~~~~~ 256 (411)
+.+.++||||...... +... ....++.+++|+|.+..... ......+. ..-.+..+|.||+|.....
T Consensus 49 ~~~~i~Dt~G~~~~~~-----~~~~-~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 49 CDLEILDTAGTEQFTA-----MREL-YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred EEEEEEeCCCcccchh-----hhHH-HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence 5678999999653321 1111 11246788899998754221 11112111 1112356789999974321
Q ss_pred h----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 G----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
. .........+ ..|...+|+..|.| ++.+++.+...
T Consensus 123 ~~~~~~~~~~~~~~~-----------------~~~~~~~SA~~~~~-i~~~f~~i~~~ 162 (168)
T cd04177 123 QVSREDGVSLSQQWG-----------------NVPFYETSARKRTN-VDEVFIDLVRQ 162 (168)
T ss_pred ccCHHHHHHHHHHcC-----------------CceEEEeeCCCCCC-HHHHHHHHHHH
Confidence 1 1111111111 12445689999999 99998888654
No 279
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.66 E-value=9.7e-08 Score=84.91 Aligned_cols=152 Identities=15% Similarity=0.052 Sum_probs=79.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++++. +.+.. +. .....++.+..... ...
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~------~~~~~-----~~----------~~~~~~~~~~~~~~-------------~~~ 50 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYV------TNKFD-----TQ----------LFHTIGVEFLNKDL-------------EVD 50 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH------cCCCC-----cC----------cCCceeeEEEEEEE-------------EEC
Confidence 3569999999999999999997 32110 00 00001111110000 000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHH-HHHHHHhc-------cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAF-DQAQAFKQ-------SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~-~~a~~f~~-------~~~~~~vIlnK~ 250 (411)
...+.+.|.||||..... .+.. .....+|.+++|.|.+... +.. .....+.. .-.+..+|.||+
T Consensus 51 ~~~~~l~i~D~~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 124 (170)
T cd04116 51 GHFVTLQIWDTAGQERFR-----SLRT-PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN 124 (170)
T ss_pred CeEEEEEEEeCCChHHHH-----HhHH-HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence 124677899999963211 1111 1123668888888876442 111 11121111 112457899999
Q ss_pred CCCCChhh---HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 251 DGHAKGGG---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 251 D~~~~~g~---~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
|...+... ...... ++. ..+...+|+..|.| +.++++.+.+.
T Consensus 125 Dl~~~~~~~~~~~~~~~----------------~~~-~~~~~e~Sa~~~~~-v~~~~~~~~~~ 169 (170)
T cd04116 125 DIPERQVSTEEAQAWCR----------------ENG-DYPYFETSAKDATN-VAAAFEEAVRR 169 (170)
T ss_pred cccccccCHHHHHHHHH----------------HCC-CCeEEEEECCCCCC-HHHHHHHHHhh
Confidence 98533111 111111 111 12345689999999 99999887653
No 280
>PRK12739 elongation factor G; Reviewed
Probab=98.66 E-value=5.1e-07 Score=98.43 Aligned_cols=131 Identities=22% Similarity=0.202 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+.+.|+++|.+|+|||||+++|....... .+..-++... ...|.+. .....++.+... ...+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~-~~~~~v~~~~---~~~D~~~-~E~~rgiti~~~-------------~~~~ 68 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKS-HKIGEVHDGA---ATMDWME-QEQERGITITSA-------------ATTC 68 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCc---cccCCCh-hHhhcCCCccce-------------eEEE
Confidence 35679999999999999999998543211 1111111100 0000000 000111111000 0112
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
..+++.++++||||... ++.+.. ......|.+++|+|+..|.... .........-.+..+++||+|...
T Consensus 69 ~~~~~~i~liDTPG~~~----f~~e~~--~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 69 FWKGHRINIIDTPGHVD----FTIEVE--RSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred EECCEEEEEEcCCCHHH----HHHHHH--HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 34578999999999742 333332 2223559999999998773322 233333322234578999999864
No 281
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.66 E-value=2.3e-07 Score=84.50 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=58.0
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc--CCceEEEEeCCCCCCChhh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHAKGGG 258 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~--~~~~~vIlnK~D~~~~~g~ 258 (411)
+.+.++||||..... .+.. .....+|.+++|.|.+..... ......+... -.+..+|.||+|.......
T Consensus 50 ~~l~i~D~~G~~~~~-----~~~~-~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 123 (193)
T cd04118 50 VTLGIWDTAGSERYE-----AMSR-IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEEECCCchhhh-----hhhH-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc
Confidence 456789999964321 1111 112367999999998754221 1122222221 1346789999997432100
Q ss_pred HHHHHHhcCCCeEEeccccccccc-cc-CCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 259 ALSAVAATKSPVIFIGTGEHMDEF-EV-FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 259 ~l~~~~~~g~Pi~fi~~Ge~i~~l-~~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...... +.+..+ .. ..+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~v~~------------~~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~i~~~~ 165 (193)
T cd04118 124 LRQVDF------------HDVQDFADEIKAQHFETSSKTGQN-VDELFQKVAEDF 165 (193)
T ss_pred cCccCH------------HHHHHHHHHcCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 000000 000000 00 12335689999999 999999887655
No 282
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.65 E-value=6.9e-08 Score=88.08 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HH--HHHHHhcc--CCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FD--QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~--~a~~f~~~--~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||..... .+... ....++.+++|.|.+..... .. ....+... ..+..+|.||+|+....
T Consensus 47 ~~~l~i~Dt~G~~~~~-----~l~~~-~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 47 HIELSLWDTAGQEEFD-----RLRSL-SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred EEEEEEEECCCChhcc-----ccccc-cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 3678999999964221 12111 12367889988887654221 11 12222221 23468899999985432
Q ss_pred hhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. .......+.+......|... .... ..+-..+|+..|.| ++++++.+.+.+
T Consensus 121 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~SAk~~~~-v~e~f~~l~~~~ 173 (189)
T cd04134 121 NE-RDDLQRYGKHTISYEEGLAVAKRIN-ALRYLECSAKLNRG-VNEAFTEAARVA 173 (189)
T ss_pred hh-HHHHhhccCCCCCHHHHHHHHHHcC-CCEEEEccCCcCCC-HHHHHHHHHHHH
Confidence 11 11111111111111111111 0111 12335689999999 999999888765
No 283
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.64 E-value=1.9e-07 Score=86.92 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. +.+.... +.+ ..+..++....... ..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~------~~~~~~~----~~~-----------ti~~d~~~~~i~~~------------~~ 49 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFT------EGRFAEV----SDP-----------TVGVDFFSRLIEIE------------PG 49 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCCC----CCc-----------eeceEEEEEEEEEC------------CC
Confidence 469999999999999999998 4332111 001 01111111000000 01
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
..+.+.++||||..... .+. ......+|.+++|.|.+...... .......+ ...+..+|.||+|...
T Consensus 50 ~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 50 VRIKLQLWDTAGQERFR-----SIT-RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred CEEEEEEEeCCcchhHH-----HHH-HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 13567899999964221 111 11223678999999987643221 12222211 1123467889999854
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .........+ .+...+|+..|.| ++++++.+.+.+
T Consensus 124 ~~~v~~~~~~~~~~~~~------------------~~~~e~Sak~g~~-v~e~f~~l~~~~ 165 (211)
T cd04111 124 QRQVTREEAEKLAKDLG------------------MKYIETSARTGDN-VEEAFELLTQEI 165 (211)
T ss_pred ccccCHHHHHHHHHHhC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211 1111111111 2234579999999 999998876543
No 284
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=1.8e-07 Score=88.76 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHH------HhhhhcCccee--------ccC----
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------QNATKAKIPFY--------GSY---- 163 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~------~~~~~~~v~~~--------~~~---- 163 (411)
.++.+.|.-||||||++.+||..|++.|.+|.+.|.|.+.|..-.-+- ......-+|++ ..+
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~ 128 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLK 128 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeecC
Confidence 344445999999999999999999999999999999998876321111 11111112211 111
Q ss_pred CCCCh--------HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCC-CeeEEEeeCcc--hhhHHHH
Q 015221 164 TESDP--------VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSSI--GQAAFDQ 232 (411)
Q Consensus 164 ~~~d~--------~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~-d~vllVvda~~--g~~~~~~ 232 (411)
...++ ....++.+....+...||++||||+-.. ++.. .+...... +-.++|--+.. -+|....
T Consensus 129 ~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGts--Dehl----s~~~~~~~~~gAviVTTPQ~vAl~Dv~K~ 202 (300)
T KOG3022|consen 129 PRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTS--DEHL----SLVQFLRESDGAVIVTTPQEVALQDVRKE 202 (300)
T ss_pred CCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCC--hhhh----heeecccccCceEEEeCchhhhhHHHHhh
Confidence 11111 1123444445556789999999976532 1111 11111222 44455543321 1333334
Q ss_pred HHHHhc-cCCceEEEEeCCCCC-------C---ChhhHHHHHHhcCCCeEE
Q 015221 233 AQAFKQ-SVSVGAVIVTKMDGH-------A---KGGGALSAVAATKSPVIF 272 (411)
Q Consensus 233 a~~f~~-~~~~~~vIlnK~D~~-------~---~~g~~l~~~~~~g~Pi~f 272 (411)
+..+.+ .+++.++|-|..--. . ..|+.....+..|+|...
T Consensus 203 i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg 253 (300)
T KOG3022|consen 203 IDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLG 253 (300)
T ss_pred hhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEe
Confidence 444443 356778887764311 1 124556666777877654
No 285
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.63 E-value=3.8e-07 Score=81.98 Aligned_cols=104 Identities=12% Similarity=-0.031 Sum_probs=58.1
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH------HHHHHhc-cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ-SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~------~a~~f~~-~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|+||||..... .+... ....+|.+++|.|.+....... ....... .-.+..+|.||+|....
T Consensus 49 ~~~l~i~Dt~G~~~~~-----~l~~~-~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 49 PALLDILDTAGQAEFT-----AMRDQ-YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred EEEEEEEeCCCchhhH-----HHhHH-HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 3667899999974321 12111 1235788999999875422111 1222211 12356889999997432
Q ss_pred hh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. .........+ .+-..+|++.|.| ++++++.+...+
T Consensus 123 ~~v~~~~~~~~a~~~~------------------~~~~e~Sa~~~~~-v~~~f~~l~~~~ 163 (172)
T cd04141 123 RQVTTEEGRNLAREFN------------------CPFFETSAALRHY-IDDAFHGLVREI 163 (172)
T ss_pred CccCHHHHHHHHHHhC------------------CEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 10 1111111111 2334589999999 999998887654
No 286
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.63 E-value=2.9e-07 Score=92.51 Aligned_cols=221 Identities=14% Similarity=0.173 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccC---CCCChHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY---TESDPVRIAVEGV 176 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~---~~~d~~~i~~~~l 176 (411)
....|+++|+-++||||+++++. +.=|+=--.|.| .....+..+|--..+ ++.+|.-+..+++
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm------~q~VlP~i~~~~--------~k~Ra~DELpqs~~GktItTTePkfvP~kAv 81 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFM------ELLVLPNISNEY--------DKERAQDELPQSAAGKTIMTTEPKFVPNEAV 81 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHH------hhhccccccchh--------HHhHHHhccCcCCCCCCcccCCCccccCcce
Confidence 34669999999999999999999 542211111222 111122334433445 5666665444443
Q ss_pred HHHhc--CCCCEEEEeCCCCCcchH-----------------------HHHHHHHHHHHhc-CCCeeEEEe-eCcch---
Q 015221 177 ETFKK--ENCDLIIVDTSGRHKQEA-----------------------ALFEEMRQVSEAT-NPDLVIFVM-DSSIG--- 226 (411)
Q Consensus 177 ~~~~~--~~~d~viIDTaG~~~~~~-----------------------~l~~el~~i~~~~-~~d~vllVv-da~~g--- 226 (411)
+-... -...+++|||+|+..... ...+++-...... .++..++|. |++.+
T Consensus 82 EI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~ 161 (492)
T TIGR02836 82 EININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIP 161 (492)
T ss_pred EEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccc
Confidence 33222 247899999999743210 0011111111122 467777777 77522
Q ss_pred -----hhHHHHHHHHhccCCceEEEEeCCCCCC-ChhhHH-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCC
Q 015221 227 -----QAAFDQAQAFKQSVSVGAVIVTKMDGHA-KGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299 (411)
Q Consensus 227 -----~~~~~~a~~f~~~~~~~~vIlnK~D~~~-~~g~~l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gd 299 (411)
....+....+++.-.|..+|+||.|... ...... ......+.|+..+.. .-+...|
T Consensus 162 Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c-----------------~~l~~~D 224 (492)
T TIGR02836 162 REDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDV-----------------ESMRESD 224 (492)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEH-----------------HHcCHHH
Confidence 1223356677776677899999999532 221222 233445666555431 1133345
Q ss_pred HHHHHHHHHhhCCCCC----chHHHHhhhcCcccHHHHHHH----HHHHHccCChhHHhh
Q 015221 300 WSGFMDKIHEVVPMDQ----QPELLQKLSEGNFTLRIMYEQ----FQNILKMGPIGQVFS 351 (411)
Q Consensus 300 i~~L~e~i~~~~~~~~----~~~~~~~~~~~~f~~~d~~~q----l~~~~~~g~~~~~~~ 351 (411)
+..+++.+.--+|-.+ ..+..+.+...+---.+|+++ ++.+.++..+.....
T Consensus 225 I~~il~~vL~EFPv~Ei~~~~P~Wve~L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~ 284 (492)
T TIGR02836 225 ILSVLEEVLYEFPILEINIDLPSWVEVLDENHWLKENFQSSVKETVKDVYRLRDVDNVVG 284 (492)
T ss_pred HHHHHHHHHhcCCceEEEeeCchHHHhcCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhc
Confidence 6666665555444332 123444444444444444443 334444555555444
No 287
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.63 E-value=1.8e-07 Score=96.87 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=41.2
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHhc-cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~~-~~~~~~vIlnK~ 250 (411)
.+++.+.||||||.. ++..++. .....+|.+++|+|+..|. ...+.+..... .++...+++||+
T Consensus 82 ~~~~~i~lIDtPGh~----~f~~~~~--~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 82 TPKYYFTIIDAPGHR----DFIKNMI--TGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred cCCeEEEEEECCChH----HHHHHHH--HhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 457899999999953 3433432 2334779999999998762 22222222221 223345789999
Q ss_pred CC
Q 015221 251 DG 252 (411)
Q Consensus 251 D~ 252 (411)
|.
T Consensus 156 D~ 157 (446)
T PTZ00141 156 DD 157 (446)
T ss_pred cc
Confidence 94
No 288
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.63 E-value=3.5e-07 Score=70.94 Aligned_cols=75 Identities=31% Similarity=0.475 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHH
Q 015221 6 LGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (411)
Q Consensus 6 l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L 83 (411)
|+++|+++++++.++..++++.+++.+++++.+|+++||+++++.+++++++++..+ ..++++.+.+.++|+++|
T Consensus 1 L~~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~---~~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIK---KKGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHC---TTSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhc---ccCCCcHHHHHHHHHHHC
Confidence 688999999999999888999999999999999999999999999999999994333 456788889999998875
No 289
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.62 E-value=1.8e-07 Score=92.56 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-HHHHHhhhhcCcceec------cCC-CCChHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-DQLKQNATKAKIPFYG------SYT-ESDPVRIAV 173 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-~qL~~~~~~~~v~~~~------~~~-~~d~~~i~~ 173 (411)
++.++.|-=||||||++++|..... |+|++++=.+.--.+-- ..+.. ..+.+++. +.+ ..|.+....
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~---~~~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLS---DTGEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccc---cCCccEEEeCCceEEEeccchhHHHHH
Confidence 4678889999999999999986655 89999987754221111 01111 11111111 011 223333333
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHH--HHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCC-ceEEEEeC
Q 015221 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVS-VGAVIVTK 249 (411)
Q Consensus 174 ~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~-~~~vIlnK 249 (411)
. +.. ...++|+++|.|.|...+..-...... .+.....-|.++-|+||........ ....+.+++. -+.+|+||
T Consensus 77 ~-L~~-~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK 154 (323)
T COG0523 77 R-LLR-RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK 154 (323)
T ss_pred H-HHh-ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEec
Confidence 3 333 345699999999999766332222211 2223334577999999986533332 3333433332 36889999
Q ss_pred CCCCCCh
Q 015221 250 MDGHAKG 256 (411)
Q Consensus 250 ~D~~~~~ 256 (411)
.|+....
T Consensus 155 ~Dlv~~~ 161 (323)
T COG0523 155 TDLVDAE 161 (323)
T ss_pred ccCCCHH
Confidence 9997764
No 290
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.62 E-value=3.1e-07 Score=81.32 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=56.7
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH------HHHHHHh--ccCCceEEEEeCCCCCCC
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF------DQAQAFK--QSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~------~~a~~f~--~~~~~~~vIlnK~D~~~~ 255 (411)
+.+.|+||||........ .. .....+|.+++|.|++...... ....... ..-.+..+|.||+|....
T Consensus 47 ~~~~i~D~~g~~~~~~~~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 47 VSLEILDTAGQQQADTEQ---LE--RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred EEEEEEECCCCcccccch---HH--HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 457899999976311111 11 1123579999999998653211 1122222 112346788999997432
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC-CCHHHHHHHHHhhC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~-Gdi~~L~e~i~~~~ 311 (411)
. ..+.......+ .+-..+|+..|. | ++.+++.+.+.+
T Consensus 122 ~~v~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~~-v~~~f~~l~~~~ 163 (165)
T cd04146 122 RQVSTEEGEKLASELG------------------CLFFEVSAAEDYDG-VHSVFHELCREV 163 (165)
T ss_pred CccCHHHHHHHHHHcC------------------CEEEEeCCCCCchh-HHHHHHHHHHHH
Confidence 1 11111111111 233457888885 6 999998887543
No 291
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.62 E-value=1.2e-06 Score=83.36 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
..|-.+.++|.+|+|||+|+|+|- +..+.-|+- + +.+.++... .+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF------~~~~~~v~~-------------------v-----g~~t~~~~~-----~~ 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALF------QGEVKEVSK-------------------V-----GVGTDITTR-----LR 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHH------hccCceeee-------------------c-----ccCCCchhh-----HH
Confidence 345567799999999999999997 333333331 0 111111110 11
Q ss_pred HhcCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHH-hccC-CceEEEEeCCC
Q 015221 179 FKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAF-KQSV-SVGAVIVTKMD 251 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f-~~~~-~~~~vIlnK~D 251 (411)
...++..++|.||||..+. |.++.+..+... .+.|.+++++++... +...+..+.. .... ....+++|.+|
T Consensus 82 ~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l--~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 82 LSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL--PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred hhccccceEEecCCCcccchhhhHHHHHHHHHHh--hhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhh
Confidence 1123567899999999763 222322222222 256889999998643 2222222221 1122 44688999999
Q ss_pred CCCChhhHHHHHHhcCCCeEEec--cccccc----ccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHHhh
Q 015221 252 GHAKGGGALSAVAATKSPVIFIG--TGEHMD----EFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKL 323 (411)
Q Consensus 252 ~~~~~g~~l~~~~~~g~Pi~fi~--~Ge~i~----~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~~~ 323 (411)
...++- +.-..-+.|...+- +-++.. -+.+-.|..+.+..++-| ++.|+..+-.+++.+.....+.++
T Consensus 160 ~a~p~~---~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wg-l~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 160 RAEPGR---EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWG-LKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred hhcccc---ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCcc-HHHHHHHHHHhCcccccchhhhhh
Confidence 766530 00000011111000 002221 133467888888899999 999999999999877554455555
No 292
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.62 E-value=2.8e-07 Score=85.85 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
.+.+.++||||...... .. ......+|.+++|+|++.+.... .........-.+..+|+||+|..
T Consensus 70 ~~~i~iiDtpG~~~f~~----~~--~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMD----EV--AAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHH----HH--HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 47889999999864322 11 12233679999999998664222 22222222223468899999975
No 293
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.62 E-value=9.9e-07 Score=90.48 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhc-cCCceEEEEeCCCCCCChhhH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~~ 259 (411)
+.+.|+||||.. .+...+ +.....+|.+++|+|++.+. ...+....+.. ..+...+|+||+|........
T Consensus 85 ~~i~liDtPG~~----~f~~~~--~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 85 RRVSFVDAPGHE----TLMATM--LSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred cEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHH
Confidence 678999999953 333332 23334679999999998542 22222222221 233457889999986532111
Q ss_pred --HHHHHhcCCCeEEecccccccc-cccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 260 --LSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 260 --l~~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
...... .+.. .....|..++|+..|.| ++.|++.+.+.++.
T Consensus 159 ~~~~~i~~------------~l~~~~~~~~~ii~vSA~~g~g-I~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIKE------------FVKGTVAENAPIIPVSALHKVN-IDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHH------------HhccccCCCCeEEEEECCCCcC-HHHHHHHHHHhCCC
Confidence 111110 0000 11134567799999999 99999999987754
No 294
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.61 E-value=7.8e-07 Score=79.24 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=60.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|+++|.+||||||+++++. +.+.. ..+.|. .+..... ....+
T Consensus 2 i~ivG~~~vGKTsli~~~~------~~~~~----~~~~pt-----------~g~~~~~-----------------i~~~~ 43 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLS------SERSL----ESVVPT-----------TGFNSVA-----------------IPTQD 43 (164)
T ss_pred EEEECCCCCCHHHHHHHHh------cCCCc----cccccc-----------CCcceEE-----------------EeeCC
Confidence 7899999999999999998 43210 011110 0111000 01235
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc--cCCceEEEEeCCCCCC
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ--SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~--~~~~~~vIlnK~D~~~ 254 (411)
+.+.+.||||...... +.. .....+|.+++|+|++.... .......+.. .-.+..+|.||.|...
T Consensus 44 ~~l~i~Dt~G~~~~~~-----~~~-~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 44 AIMELLEIGGSQNLRK-----YWK-RYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred eEEEEEECCCCcchhH-----HHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 7789999999753221 111 12336799999999876432 1112222321 2234678999999744
No 295
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.60 E-value=1.2e-07 Score=84.43 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHH-HHHhccCCceEEEEeCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQA-QAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a-~~f~~~~~~~~vIlnK~ 250 (411)
..+++||||||.............+.. ..+|.+++|+++..... ..... +..........+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYL--PKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHH--STTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhh--ccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 467999999998543321111111222 47799999999986422 22233 33333344578889985
No 296
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.59 E-value=2.6e-07 Score=82.52 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++++. +.+. .+.+.+ ..+..+...... ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~------~~~~----~~~~~~-----------t~~~~~~~~~~~-------------~~~ 48 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFC------AGRF----PERTEA-----------TIGVDFRERTVE-------------IDG 48 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCC----CCcccc-----------ceeEEEEEEEEE-------------ECC
Confidence 469999999999999999997 2111 000110 011111100000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
..+.+.|+||||...... .+.. .....+|.+++|+|++..... ......+.. .-.+..+|.||+|...
T Consensus 49 ~~~~~~i~Dt~G~~~~~~----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 49 ERIKVQLWDTAGQERFRK----SMVQ-HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred eEEEEEEEeCCChHHHHH----hhHH-HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 247889999999632111 1111 112367999999999764321 111212211 1134688999999743
No 297
>PRK12740 elongation factor G; Reviewed
Probab=98.59 E-value=3.1e-07 Score=99.91 Aligned_cols=68 Identities=16% Similarity=0.118 Sum_probs=42.0
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
..++++.+|||||..... .+... ....+|.+++|+|++.+.... .........-.+..+|+||+|...
T Consensus 57 ~~~~~i~liDtPG~~~~~----~~~~~--~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFT----GEVER--ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred ECCEEEEEEECCCcHHHH----HHHHH--HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 458999999999985322 22221 223579999999998763222 122222222234678999999854
No 298
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.57 E-value=3.1e-07 Score=80.78 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=68.9
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH------------H---------------HHHHhhh
Q 015221 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF------------D---------------QLKQNAT 153 (411)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~------------~---------------qL~~~~~ 153 (411)
++|+++|+. |+||||++.+||..+++.|++|++|+.|.+.+... + .+.....
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 578999955 99999999999999999999999999998655322 1 1111111
Q ss_pred ---hcCcceeccCCCCChHH-----HHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 154 ---KAKIPFYGSYTESDPVR-----IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 154 ---~~~v~~~~~~~~~d~~~-----i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
..++.++.......+.. .....+..++. .||+||||+|+........ .....+|.+++|+.+.
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~~-~yd~IivD~~~~~~~~~~~-------~~l~~~D~ii~v~~~~ 151 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALKE-HYDYIIVDLPSSLSNPDTQ-------AVLELADKIILVVRPD 151 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHHH-HSSEEEEEEESTTTHTHHH-------HHHTTHSEEEEEEETT
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHHH-cCCEEEEECcCCccHHHHH-------HHHHHCCEEEEEECCC
Confidence 12333333223222222 22333444443 7999999999987543221 1122458999998875
No 299
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.57 E-value=1.8e-07 Score=96.43 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=40.0
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch---hh--HHHHHHHHh-ccCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QA--AFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~--~~~~a~~f~-~~~~~~~vIlnK~D~~~ 254 (411)
+++.+.|+||||.. .+...+ +.....+|.+++|+|++.+ .. ......... ...+...+++||+|...
T Consensus 83 ~~~~i~iiDtpGh~----~f~~~~--~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 83 DKYEVTIVDCPGHR----DFIKNM--ITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred CCeEEEEEECCCHH----HHHHHH--HhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 46889999999953 233222 1223468999999999876 21 111111111 11234567899999853
No 300
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.57 E-value=1.1e-07 Score=88.62 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=65.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|++||||||++|.+. |.++.-....... .+ ..+..+. ....
T Consensus 2 ~IlllG~tGsGKSs~~N~il------g~~~f~~~~~~~~----------~t-~~~~~~~-----------------~~~~ 47 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSIL------GKEVFKSGSSAKS----------VT-QECQKYS-----------------GEVD 47 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHH------TSS-SS--TTTSS-------------SS-EEEE-----------------EEET
T ss_pred EEEEECCCCCCHHHHHHHHh------cccceeeccccCC----------cc-cccceee-----------------eeec
Confidence 48999999999999999998 8776332210000 00 0011000 0124
Q ss_pred CCCEEEEeCCCCCcc---hHHHHHHHHHHHH--hcCCCeeEEEeeCcchh-h---HHH-HHHHHhcc-CCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQ---EAALFEEMRQVSE--ATNPDLVIFVMDSSIGQ-A---AFD-QAQAFKQS-VSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~---~~~l~~el~~i~~--~~~~d~vllVvda~~g~-~---~~~-~a~~f~~~-~~~~~vIlnK~D 251 (411)
+..+.+|||||.... ++....++..... ...++.+++|++...-. . .++ ....|.+. ...+.||+|.+|
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 788999999998543 3445555544322 23578999999986321 1 222 22334322 234788899999
Q ss_pred CCCC
Q 015221 252 GHAK 255 (411)
Q Consensus 252 ~~~~ 255 (411)
....
T Consensus 128 ~~~~ 131 (212)
T PF04548_consen 128 ELED 131 (212)
T ss_dssp GGTT
T ss_pred cccc
Confidence 7443
No 301
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.57 E-value=6.2e-07 Score=84.25 Aligned_cols=107 Identities=20% Similarity=0.180 Sum_probs=61.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||+++++. +.+.. .. .+ ..+..++.. ...
T Consensus 2 KIvivG~~~vGKTSLi~r~~------~~~f~--~~---~~-----------Tig~~~~~~-----------------~~~ 42 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYM------ERRFK--DT---VS-----------TVGGAFYLK-----------------QWG 42 (220)
T ss_pred EEEEECCCCCcHHHHHHHHh------cCCCC--CC---CC-----------ccceEEEEE-----------------Eee
Confidence 48899999999999999998 33221 10 00 011111110 012
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH---HHHHhc---cCCceEEEEeCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ---AQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~---a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
.+.+.|+||||..... .+.. .....+|.+++|.|.+..+...+. .....+ .-.+..+|.||+|+..
T Consensus 43 ~~~l~iwDt~G~e~~~-----~l~~-~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 43 PYNISIWDTAGREQFH-----GLGS-MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEEeCCCcccch-----hhHH-HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 5778999999975322 1211 113367999999999865322221 111111 1134678999999854
No 302
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.56 E-value=4.8e-07 Score=83.83 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCC-CeeEEEeeCcchh-hHHHHHHHHh---------ccCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSSIGQ-AAFDQAQAFK---------QSVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~-d~vllVvda~~g~-~~~~~a~~f~---------~~~~~~~vIlnK~D 251 (411)
+..+.|+||||.......+... .... +.+++|+|++..+ ...+.+..+. ....+..+++||+|
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~------~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~D 120 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLET------LKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQD 120 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHH------HhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchh
Confidence 5778999999975332221111 1234 8999999998763 2222221111 11234678899999
Q ss_pred CCC
Q 015221 252 GHA 254 (411)
Q Consensus 252 ~~~ 254 (411)
...
T Consensus 121 l~~ 123 (203)
T cd04105 121 LFT 123 (203)
T ss_pred hcc
Confidence 743
No 303
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.55 E-value=1e-06 Score=78.02 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=56.2
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHH---HhccCCceEEEEeCCCCCCChh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA---FKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~---f~~~~~~~~vIlnK~D~~~~~g 257 (411)
+.+.|.||||..... .+.. .....+|.+++|.|.+....... .... ......+..+|.||.|+.....
T Consensus 49 ~~l~i~D~~g~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 49 VRIQIWDTAGQERYQ-----TITK-QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred EEEEEEeCCCcHhHH-----hhHH-HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 567899999964221 1111 12336799999999875422111 1121 1111234578899999743211
Q ss_pred ----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 258 ----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 258 ----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.+.......+ .+-..+|+..|.| ++.+++.+.+.
T Consensus 123 v~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYG------------------MDFFETSACTNSN-IKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHhh
Confidence 1111111111 1224588999998 99999887653
No 304
>PRK13351 elongation factor G; Reviewed
Probab=98.55 E-value=9.9e-07 Score=96.24 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
.+.|+++|..|+|||||+.+|......- .+..-++...+.. ... . .....++.+... ...+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~-~~~~~v~~~~~~~-d~~--~-~e~~r~~ti~~~-------------~~~~~ 69 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKI-HKMGEVEDGTTVT-DWM--P-QEQERGITIESA-------------ATSCD 69 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCc-cccccccCCcccC-CCC--H-HHHhcCCCcccc-------------eEEEE
Confidence 4679999999999999999998542110 0111111000000 000 0 000011111000 00122
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
..++.+.++||||..... .+... ....+|.+++|+|++.+... ..........-.+..+++||+|...
T Consensus 70 ~~~~~i~liDtPG~~df~----~~~~~--~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFT----GEVER--SLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred ECCEEEEEEECCCcHHHH----HHHHH--HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 347889999999975322 22221 22356999999999876322 2222223222234578999999753
No 305
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=98.54 E-value=8.4e-08 Score=94.45 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
+++.+.|..||||||+++.+|.+++++|++|++|+.||-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 578899999999999999999999999999999999983
No 306
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.54 E-value=2.2e-07 Score=83.85 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=61.2
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||..... .++.. ....+|.+++|.|.+......+ ....+.. .-.+..+|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~~-~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 48 PYTLGLFDTAGQEDYD-----RLRPL-SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred EEEEEEEECCCccchh-----hhhhh-hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 3678899999975322 12211 2236799999999876432211 1112221 123468899999975431
Q ss_pred hhHHHHHHhc-CCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAAT-KSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~-g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
...+..... ..+|. ...|+.+..-....+-..+|++.|.| ++.+++.+..
T Consensus 122 -~~~~~l~~~~~~~v~-~~~~~~~a~~~~~~~~~e~SA~tg~~-v~~~f~~~~~ 172 (175)
T cd01874 122 -STIEKLAKNKQKPIT-PETGEKLARDLKAVKYVECSALTQKG-LKNVFDEAIL 172 (175)
T ss_pred -hhHHHhhhccCCCcC-HHHHHHHHHHhCCcEEEEecCCCCCC-HHHHHHHHHH
Confidence 111111110 01110 00112121101112345689999999 9999988765
No 307
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.54 E-value=3.3e-07 Score=82.23 Aligned_cols=108 Identities=16% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc----CCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~----~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|.||||..... .+. ......+|.+++|.|++..... ......+.+. ..+..+|.||+|+..+
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~-~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 48 PFSLQLWDTAGQERFK-----CIA-STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred EEEEEEEeCCChHHHH-----hhH-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 3578999999964221 121 1223478999999999753221 1122222211 1235789999997433
Q ss_pred hhhH-HHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGA-LSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~-l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .... +... ..+ ..+...+|+..|.| ++.+++.+.+..
T Consensus 122 ~~~~~~~~~------------~~~~~~~~--~~~~~e~Sa~~g~~-v~~lf~~l~~~~ 164 (170)
T cd04108 122 AQYALMEQD------------AIKLAAEM--QAEYWSVSALSGEN-VREFFFRVAALT 164 (170)
T ss_pred ccccccHHH------------HHHHHHHc--CCeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 1100 0000 0000 001 11234579999999 999998887654
No 308
>PLN03108 Rab family protein; Provisional
Probab=98.53 E-value=5e-07 Score=84.03 Aligned_cols=154 Identities=14% Similarity=0.053 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++++ +.+.... +.+ ..+..+..... ....
T Consensus 7 ~kivivG~~gvGKStLi~~l~------~~~~~~~----~~~-----------ti~~~~~~~~i-------------~~~~ 52 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFT------DKRFQPV----HDL-----------TIGVEFGARMI-------------TIDN 52 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCCC----CCC-----------CccceEEEEEE-------------EECC
Confidence 569999999999999999998 4322110 000 00111100000 0001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHh---ccCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFK---QSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~---~~~~~~~vIlnK~D~~~~ 255 (411)
..+.+-++||||..... .+. ......+|.+++|.|++...... ....... ....+..+|.||+|+..+
T Consensus 53 ~~i~l~l~Dt~G~~~~~-----~~~-~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 53 KPIKLQIWDTAGQESFR-----SIT-RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred EEEEEEEEeCCCcHHHH-----HHH-HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 13457799999964211 111 11223678999999997542111 1111111 112345788999998543
Q ss_pred hhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.....+.. +.. ... ..+...+|+..|.| ++++++.+.+.+
T Consensus 127 ~~~~~~~~-------------~~~~~~~--~~~~~e~Sa~~~~~-v~e~f~~l~~~~ 167 (210)
T PLN03108 127 RAVSTEEG-------------EQFAKEH--GLIFMEASAKTAQN-VEEAFIKTAAKI 167 (210)
T ss_pred cCCCHHHH-------------HHHHHHc--CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 11111100 111 011 12345688999999 999887775543
No 309
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.53 E-value=3.1e-07 Score=82.74 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=60.4
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhcc--CCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~~--~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||..... .+... ....+|.+++|.|.+......+. ...+... -.+..+|.||+|+....
T Consensus 48 ~~~l~i~Dt~G~~~~~-----~~~~~-~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 48 PVNLGLWDTAGQEDYD-----RLRPL-SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred EEEEEEEECCCchhhh-----hhhhh-hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 3678899999964221 12111 22367999999999754321111 1112211 13567889999985321
Q ss_pred hhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
...-........++. ...|+.+ .++. ..+...+|+..|.| ++++++.+..
T Consensus 122 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~-~~~~~e~Sa~~~~~-i~~~f~~l~~ 172 (174)
T cd01871 122 DTIEKLKEKKLTPIT-YPQGLAMAKEIG-AVKYLECSALTQKG-LKTVFDEAIR 172 (174)
T ss_pred hhHHHHhhccCCCCC-HHHHHHHHHHcC-CcEEEEecccccCC-HHHHHHHHHH
Confidence 111111111011110 1111111 1111 12335589999999 9999988765
No 310
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.53 E-value=5.5e-07 Score=87.93 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=88.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKEN 183 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~ 183 (411)
|.+||.||+||||+++.++ .-|+-|.+. | .+|. +|..+.... ..+
T Consensus 162 VGLVG~PNaGKSTlls~vS------~AkPKIadY-p-----------FTTL--~PnLGvV~~---------------~~~ 206 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVS------AAKPKIADY-P-----------FTTL--VPNLGVVRV---------------DGG 206 (369)
T ss_pred cccccCCCCcHHHHHHHHh------hcCCcccCC-c-----------cccc--cCcccEEEe---------------cCC
Confidence 6799999999999999999 666666554 1 1111 111110000 124
Q ss_pred CCEEEEeCCCCCcchHH---H-HHHHHHHHHhcCCCeeEEEeeCcch--hhHH---H----HHHHHhccC--CceEEEEe
Q 015221 184 CDLIIVDTSGRHKQEAA---L-FEEMRQVSEATNPDLVIFVMDSSIG--QAAF---D----QAQAFKQSV--SVGAVIVT 248 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~---l-~~el~~i~~~~~~d~vllVvda~~g--~~~~---~----~a~~f~~~~--~~~~vIln 248 (411)
..+|+-|-||......+ + .+.++.+. .+...+.|+|.+.. .+.. . ....|...+ ++..+|+|
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE---Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHIE---RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHHH---hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 56899999998543211 1 12333333 34678899998742 1111 1 223333322 46789999
Q ss_pred CCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 249 K~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
|+|............. .+.....+.+..++|+..+.| ++.|+..+.+.++
T Consensus 284 KiD~~~~~e~~~~~~~-------------~l~~~~~~~~~~~ISa~t~~g-~~~L~~~~~~~l~ 333 (369)
T COG0536 284 KIDLPLDEEELEELKK-------------ALAEALGWEVFYLISALTREG-LDELLRALAELLE 333 (369)
T ss_pred ccCCCcCHHHHHHHHH-------------HHHHhcCCCcceeeehhcccC-HHHHHHHHHHHHH
Confidence 9995443222222111 111111122222399999999 9999999888774
No 311
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=98.51 E-value=3.2e-06 Score=80.46 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch------------HHHHHHHhhh-------------hcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG------------AFDQLKQNAT-------------KAK 156 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~------------a~~qL~~~~~-------------~~~ 156 (411)
+.|++.|.-|.||||++.+|+..|+..|+||+.|.|||.... ..+.++.... ..+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~g 80 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKG 80 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGG
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCC
Confidence 469999999999999999999999999999999999984322 2244444332 112
Q ss_pred cceeccCCCCCh--------HHHHHHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch
Q 015221 157 IPFYGSYTESDP--------VRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (411)
Q Consensus 157 v~~~~~~~~~d~--------~~i~~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 226 (411)
+.+...+. ..| +..+.+.+++.. ..++|+|+.|.-|-..--.-.| -+ +.-.++.+++|.+...-
T Consensus 81 i~CvEsGG-PePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFam-Pi----r~g~a~evyIVtSge~m 154 (273)
T PF00142_consen 81 ILCVESGG-PEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAM-PI----REGYAQEVYIVTSGEFM 154 (273)
T ss_dssp EEEEE----SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTH-HH----HTTS-SEEEEEEBSSHH
T ss_pred ceeeccCC-CcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeeh-hh----hhccCCEEEEEecCcHH
Confidence 32222221 122 122333344331 2468999999877431110000 11 11245788888766321
Q ss_pred --hhHHHH---HHHHhcc--CCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEe
Q 015221 227 --QAAFDQ---AQAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (411)
Q Consensus 227 --~~~~~~---a~~f~~~--~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi 273 (411)
..+-++ ...|... ..+.|+|+|.-+.......+-.+...+|.|+...
T Consensus 155 slyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~~~v~~fa~~~g~~i~~~ 208 (273)
T PF00142_consen 155 SLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEEEIVEDFAERIGTPIIAF 208 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCchHHHHHHHHHcCCcEEEe
Confidence 222233 3444432 3468999997665444444556778889887653
No 312
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.51 E-value=5.4e-07 Score=84.78 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+|||||+++..++ +..- .+.|-|...+. + ...+.. ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~------~~~f----~~~y~pTi~~~---~----~~~~~~------------------~~ 46 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFA------KDAY----PGSYVPTVFEN---Y----TASFEI------------------DK 46 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCC----CCccCCccccc---e----EEEEEE------------------CC
Confidence 358999999999999999998 3210 01121111000 0 000000 01
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHH----hc--cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAF----KQ--SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f----~~--~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.|.||+|....+ .++. .....+|.+++|.|.+...........+ .. .-.+..+|.||+|+...
T Consensus 47 ~~v~L~iwDt~G~e~~~-----~l~~-~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 47 RRIELNMWDTSGSSYYD-----NVRP-LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EEEEEEEEeCCCcHHHH-----HHhH-HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccc
Confidence 24678899999964221 2221 1234789999999988653322221111 11 11246788999998543
Q ss_pred hhhHHHHHHhcC-CCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g~~l~~~~~~g-~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.. .+......+ .||.. ..|+.+.......+-.-.|+..|.+++.++++.+...
T Consensus 121 ~~-~~~~~~~~~~~pIs~-e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 121 LA-TLRELSKQRLIPVTH-EQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hh-hhhhhhhccCCccCH-HHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 21 111111111 23321 1344443222222334579998885599999887764
No 313
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.51 E-value=1.4e-06 Score=90.28 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=41.4
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHh-ccCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~-~~~~~~~vIlnK~ 250 (411)
..++.+.||||||.. ++...+ +.....+|.+++|+|+..|. ...+.+.... ..++...+++||+
T Consensus 82 ~~~~~i~liDtPGh~----df~~~~--~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 82 TTKYYCTVIDAPGHR----DFIKNM--ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred CCCEEEEEEECCCHH----HHHHHH--HhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcc
Confidence 457889999999963 344343 23334789999999998651 1222222211 2233346679999
Q ss_pred CCC
Q 015221 251 DGH 253 (411)
Q Consensus 251 D~~ 253 (411)
|..
T Consensus 156 D~~ 158 (447)
T PLN00043 156 DAT 158 (447)
T ss_pred cCC
Confidence 975
No 314
>PLN03110 Rab GTPase; Provisional
Probab=98.51 E-value=5e-07 Score=84.41 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|. +.+... ... ...++.+....-. ...
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~------~~~~~~-~~~--------------~t~g~~~~~~~v~-------------~~~ 58 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFT------RNEFCL-ESK--------------STIGVEFATRTLQ-------------VEG 58 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCCC-CCC--------------CceeEEEEEEEEE-------------ECC
Confidence 569999999999999999998 432211 100 0011111100000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhcc---CCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS---VSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~~---~~~~~vIlnK~D~~~~ 255 (411)
..+.+.|.||||..... .+.. .....++.+++|.|.+...... .....+... -.+..+|.||+|+...
T Consensus 59 ~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 59 KTVKAQIWDTAGQERYR-----AITS-AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEEECCCcHHHH-----HHHH-HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 13578899999964221 1211 1123678899999987542211 112222221 1345788999997432
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
........ ..+.+. ...+...+|+..|.| ++.+++.+.+.+
T Consensus 133 ~~~~~~~~-------------~~l~~~-~~~~~~e~SA~~g~~-v~~lf~~l~~~i 173 (216)
T PLN03110 133 RSVAEEDG-------------QALAEK-EGLSFLETSALEATN-VEKAFQTILLEI 173 (216)
T ss_pred cCCCHHHH-------------HHHHHH-cCCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 11100000 001010 113445689999999 999988876655
No 315
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.49 E-value=6.6e-07 Score=82.93 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=58.8
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+ ....+.. .-.+..+|.||+|+....
T Consensus 48 ~v~l~iwDtaGqe~~~-----~l~~-~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 48 KIRLQIWDTAGQERFN-----SITS-AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred EEEEEEEeCCCchhhH-----HHHH-HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 3778899999974221 1211 12337899999999986432111 1122221 113457889999984321
Q ss_pred hhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...... ++.. ..+. ..+-..+|++.|.| ++++++++.+.+
T Consensus 122 ~v~~~~-------------~~~~a~~~~-~~~~~etSAktg~g-V~e~F~~l~~~~ 162 (202)
T cd04120 122 EISRQQ-------------GEKFAQQIT-GMRFCEASAKDNFN-VDEIFLKLVDDI 162 (202)
T ss_pred ccCHHH-------------HHHHHHhcC-CCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 000000 0111 0110 01234589999999 999998876543
No 316
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.49 E-value=9.5e-07 Score=80.22 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=61.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
.+.|+|+||+|+|||++..+|.. |..+--++. . ..++.+.. . .
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~-----~~~~~T~tS-------------~--e~n~~~~~--~---------------~ 45 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVN-----GKTVPTVTS-------------M--ENNIAYNV--N---------------N 45 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHH-----SS---B----------------S--SEEEECCG--S---------------S
T ss_pred CceEEEEcCCCCCHHHHHHHHhc-----CCcCCeecc-------------c--cCCceEEe--e---------------c
Confidence 35799999999999999999983 222211111 0 11111000 0 0
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-hHHHHHHHHhc---------cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQ---------SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-~~~~~a~~f~~---------~~~~~~vIlnK~ 250 (411)
..+..+.+||+||.......+...+. ....+..++||+|++..+ +..+.|+.+.. ...+..+++||.
T Consensus 46 ~~~~~~~lvD~PGH~rlr~~~~~~~~---~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 46 SKGKKLRLVDIPGHPRLRSKLLDELK---YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp TCGTCECEEEETT-HCCCHHHHHHHH---HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred CCCCEEEEEECCCcHHHHHHHHHhhh---chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 12457899999998666555554432 223457899999998543 22233333221 223457789999
Q ss_pred CCCC
Q 015221 251 DGHA 254 (411)
Q Consensus 251 D~~~ 254 (411)
|...
T Consensus 123 Dl~~ 126 (181)
T PF09439_consen 123 DLFT 126 (181)
T ss_dssp TSTT
T ss_pred cccc
Confidence 9844
No 317
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.48 E-value=1.1e-06 Score=84.13 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=60.4
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc------------cCCceEEEE
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ------------SVSVGAVIV 247 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~------------~~~~~~vIl 247 (411)
.+.+-|.||+|..... .++.. ....+|.+++|.|.+.... .......+.. .-.+..+|.
T Consensus 47 ~~~l~I~Dt~G~~~~~-----~~~~~-~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 47 VYQLDILDTSGNHPFP-----AMRRL-SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred EEEEEEEECCCChhhh-----HHHHH-HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 3678899999964321 22221 2346799999999875421 1111111111 113468899
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|+............ +.... ....+...+|+..|.| ++++++.+.+..
T Consensus 121 NK~Dl~~~~~v~~~ei~------------~~~~~-~~~~~~~evSAktg~g-I~elf~~L~~~~ 170 (247)
T cd04143 121 NKADRDFPREVQRDEVE------------QLVGG-DENCAYFEVSAKKNSN-LDEMFRALFSLA 170 (247)
T ss_pred ECccchhccccCHHHHH------------HHHHh-cCCCEEEEEeCCCCCC-HHHHHHHHHHHh
Confidence 99998542111111110 00000 0012345689999999 999999998865
No 318
>PLN03126 Elongation factor Tu; Provisional
Probab=98.48 E-value=1e-06 Score=91.82 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=67.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCce--EeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA--LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~--lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
...|+++|.+++|||||+++|...+..-+.+.. ....|... .++ ..++.+.... ..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~---~Er------~rGiTi~~~~-------------~~ 138 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAP---EER------ARGITINTAT-------------VE 138 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCCh---hHH------hCCeeEEEEE-------------EE
Confidence 456999999999999999999955432111100 00011110 000 0112110000 00
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
+..+++.+.||||||.. ++...+ +.....+|.+++|+|+..|.. ..+.+..... ..+...+++||+|...
T Consensus 139 ~~~~~~~i~liDtPGh~----~f~~~~--~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 139 YETENRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EecCCcEEEEEECCCHH----HHHHHH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 11246788999999964 333343 233346799999999987632 1222222222 2232456899999864
No 319
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.48 E-value=6.4e-07 Score=81.96 Aligned_cols=121 Identities=13% Similarity=0.060 Sum_probs=62.2
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+-|.||||..... .+... ....+|.+++|.|.+......+. ...... .-.+..+|.||.|+....
T Consensus 50 ~~~l~i~Dt~G~e~~~-----~l~~~-~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 50 TVSLNLWDTAGQEEYD-----RLRTL-SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred EEEEEEEECCCchhhh-----hhhhh-hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 4678899999974221 22211 12368999999998754321111 111111 123457899999985432
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ........+........|+.+..-....+-..+|++.|.| ++++++.+.+.+
T Consensus 124 ~-~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~-v~e~f~~l~~~~ 176 (191)
T cd01875 124 D-TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG-VKEVFAEAVRAV 176 (191)
T ss_pred h-hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 1 1111111111100001112221100112334589999999 999999888665
No 320
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.48 E-value=1.2e-06 Score=78.09 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCceEe
Q 015221 110 QGSGKTTTCTKYAYYHQKKGWKPALV 135 (411)
Q Consensus 110 ~GvGKTTl~~kLa~~l~~~g~kv~lV 135 (411)
+|+||||++..|+..|+++|++|.++
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 59999999999999999999999996
No 321
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.47 E-value=7.7e-07 Score=80.93 Aligned_cols=112 Identities=11% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc--cCCceEEEEeCCCCCCChh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ--SVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~--~~~~~~vIlnK~D~~~~~g 257 (411)
.+.+.|.||+|..... .+.. .....+|.+++|+|.+......+ ....+.. ...+..+|.||+|+.....
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~-~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~ 121 (182)
T cd04128 48 EITFSIWDLGGQREFI-----NMLP-LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLP 121 (182)
T ss_pred EEEEEEEeCCCchhHH-----HhhH-HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 3678899999974321 1211 12346799999999875432111 1222211 1122367899999842100
Q ss_pred -hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 -~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
....... ..++.+..... .+...+|++.|.| ++.+++.+.+.+
T Consensus 122 ~~~~~~~~---------~~~~~~a~~~~-~~~~e~SAk~g~~-v~~lf~~l~~~l 165 (182)
T cd04128 122 PEEQEEIT---------KQARKYAKAMK-APLIFCSTSHSIN-VQKIFKIVLAKA 165 (182)
T ss_pred chhhhhhH---------HHHHHHHHHcC-CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 0000000 00111111111 2345689999999 999999887655
No 322
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.47 E-value=1e-06 Score=82.53 Aligned_cols=153 Identities=12% Similarity=-0.014 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+||||||+++++.. |.-.. .+ ....++.++..... .
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~-----~~f~~-----~~-----------~~tig~~~~~~~~~-------------~ 57 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFEK-----KY-----------EPTIGVEVHPLDFF-------------T 57 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhh-----CCCCC-----cc-----------CCccceeEEEEEEE-------------E
Confidence 346799999999999999999762 21000 00 00111221110000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
....+.+.|.||||..... .+... ....++.+++|.|.+....... ....+... -.+..+|.||+|...
T Consensus 58 ~~~~~~l~i~Dt~G~~~~~-----~~~~~-~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 58 NCGKIRFYCWDTAGQEKFG-----GLRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred CCeEEEEEEEECCCchhhh-----hhhHH-HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 0124678999999964321 12111 1236788999999886532221 11222111 124678899999843
Q ss_pred Chh--hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g--~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+.- ..+..... ...+-..+|+..|.| +..+++.+.+.+
T Consensus 132 ~~v~~~~~~~~~~------------------~~~~~~e~SAk~~~~-i~~~f~~l~~~~ 171 (219)
T PLN03071 132 RQVKAKQVTFHRK------------------KNLQYYEISAKSNYN-FEKPFLYLARKL 171 (219)
T ss_pred ccCCHHHHHHHHh------------------cCCEEEEcCCCCCCC-HHHHHHHHHHHH
Confidence 210 01111110 011224589999999 999998887655
No 323
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.47 E-value=2.5e-06 Score=71.60 Aligned_cols=92 Identities=23% Similarity=0.172 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|+||+||||++..++..+...++.+..++++........+.. .......................+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999888876667888888765433322111 01111112223334445555666665
Q ss_pred CCCCEEEEeCCCCCcchH
Q 015221 182 ENCDLIIVDTSGRHKQEA 199 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~ 199 (411)
..++++++|.++......
T Consensus 77 ~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 77 LKPDVLILDEITSLLDAE 94 (148)
T ss_pred cCCCEEEEECCcccCCHH
Confidence 567999999999875543
No 324
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=5.3e-07 Score=92.43 Aligned_cols=172 Identities=15% Similarity=0.137 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+-++++..---|||||+-+|... ...++.+.......|.+... ++.||.+....+. +.+-..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~-------tg~i~~~~~q~q~LDkl~vE-RERGITIkaQtas----------ify~~~ 122 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLEL-------TGTIDNNIGQEQVLDKLQVE-RERGITIKAQTAS----------IFYKDG 122 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHH-------hCCCCCCCchhhhhhhhhhh-hhcCcEEEeeeeE----------EEEEcC
Confidence 55788888899999999998732 22444444444444444322 2334544321110 000001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhccCCceEEEEeCCCCCC-Chh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQSVSVGAVIVTKMDGHA-KGG 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~~~~~~vIlnK~D~~~-~~g 257 (411)
..|-+-+|||||......+.... . ..++-+++||||+.|..+ .....+|...+. .+.|+||+|... +..
T Consensus 123 ~~ylLNLIDTPGHvDFs~EVsRs----l--aac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~adpe 195 (650)
T KOG0462|consen 123 QSYLLNLIDTPGHVDFSGEVSRS----L--AACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSADPE 195 (650)
T ss_pred CceEEEeecCCCcccccceeheh----h--hhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCCCHH
Confidence 24889999999987554432211 1 245889999999988444 344556655543 367899999843 332
Q ss_pred hHHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 258 GALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 258 ~~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
...+.. ...+. +-.+..++|+++|.| ++++++++-+.+|.-
T Consensus 196 ~V~~q~~~lF~~---------------~~~~~i~vSAK~G~~-v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 196 RVENQLFELFDI---------------PPAEVIYVSAKTGLN-VEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHHHHhcC---------------CccceEEEEeccCcc-HHHHHHHHHhhCCCC
Confidence 333222 11111 123557899999999 999999999998643
No 325
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.45 E-value=1.3e-06 Score=86.42 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=25.6
Q ss_pred CCcchhhhhhcCCCCHHHHHH-HHHhhCCCCC
Q 015221 285 FDVKPFVSRLLGMGDWSGFMD-KIHEVVPMDQ 315 (411)
Q Consensus 285 f~p~~~vs~~~g~Gdi~~L~e-~i~~~~~~~~ 315 (411)
+.+..++|+..|.+ +..|.+ .+.+++|+..
T Consensus 242 ~~~iI~iSA~~e~~-L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 242 DEIVVPTSAEAELA-LRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCeEEEEeCccccc-HHHHHHhhHHHhCCCCC
Confidence 55677899999999 999998 6999998764
No 326
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.45 E-value=9.3e-07 Score=80.12 Aligned_cols=120 Identities=13% Similarity=0.082 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||..... .+.. .....+|.+++|.|.+......+. ...+.+ .-.+..+|.||+|+....
T Consensus 48 ~~~l~iwDt~G~~~~~-----~~~~-~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 48 RIELSLWDTSGSPYYD-----NVRP-LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred EEEEEEEECCCchhhh-----hcch-hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 4678899999963221 1211 123367999999998754322111 111211 123467889999985432
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
+...........||.. ..|+.+..-....+-..+|++.|.+++++++..+.+
T Consensus 122 ~~~~~~~~~~~~~v~~-~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 122 STLMELSHQRQAPVSY-EQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hHHHHHHhcCCCCCCH-HHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 2211111111112211 122222111111123458999998449998887765
No 327
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.45 E-value=5.4e-07 Score=83.67 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=34.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
-+++|||||||||-++-....+...|+++++|..||
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP 40 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence 578999999999999999999999999999999997
No 328
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.45 E-value=1.5e-06 Score=79.06 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=62.1
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+-|.||+|.... ..++. .....+|.+++|.|.+......+. ...+.+ ...+..+|.||+|+....
T Consensus 52 ~~~l~iwDtaG~e~~-----~~~~~-~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~ 125 (182)
T cd04172 52 RIELSLWDTSGSPYY-----DNVRP-LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDL 125 (182)
T ss_pred EEEEEEEECCCchhh-----Hhhhh-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcCh
Confidence 467889999996321 12221 123478999999998765322221 112221 123467889999985432
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
+...........||. ...|+.+..-....+-..+|++.|.|+++++++.+.++
T Consensus 126 ~~~~~~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 126 TTLVELSNHRQTPVS-YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hhHHHHHhcCCCCCC-HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 222111111111221 11222221111111234589999986699888877663
No 329
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.44 E-value=4.2e-07 Score=80.52 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+..++++|.|||||||++|+|. |.+.+.++.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~------~~~~~~~~~ 132 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLR------SKKVCKVAP 132 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHh------cCCceeeCC
Confidence 4568899999999999999999 877776665
No 330
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.2e-05 Score=82.65 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=95.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
..+|++|-+.|.---||||++-+|= +..|+-.-+ .+-...+--|...-
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lR------ks~VAA~E~-------------GGITQhIGAF~V~~------------- 197 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALR------KSSVAAGEA-------------GGITQHIGAFTVTL------------- 197 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHh------hCceehhhc-------------CCccceeceEEEec-------------
Confidence 3468899999999999999999886 444432222 11111111111111
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
..|..+.|.||||... +..|+. ..+.-.|.+++|+.+..|- ...+.++..+..-.+..+.+||+|....
T Consensus 198 ---p~G~~iTFLDTPGHaA-----F~aMRa-RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 198 ---PSGKSITFLDTPGHAA-----FSAMRA-RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred ---CCCCEEEEecCCcHHH-----HHHHHh-ccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 1367889999999742 334532 2333568999999887662 2222223333333345778999996432
Q ss_pred -hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 -GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 -~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..-....+...|+++ +++---.+...+|++.|.| ++.|.|.+.-.
T Consensus 269 ~pekv~~eL~~~gi~~---------E~~GGdVQvipiSAl~g~n-l~~L~eaill~ 314 (683)
T KOG1145|consen 269 NPEKVKRELLSQGIVV---------EDLGGDVQVIPISALTGEN-LDLLEEAILLL 314 (683)
T ss_pred CHHHHHHHHHHcCccH---------HHcCCceeEEEeecccCCC-hHHHHHHHHHH
Confidence 122233333344443 3333334567899999999 99988887543
No 331
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.41 E-value=2.7e-06 Score=78.01 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++.++. +.+. ..++.+ ..+..+...... ...
T Consensus 7 ~KivviG~~~vGKTsll~~~~------~~~~----~~~~~~-----------t~~~~~~~~~i~-------------~~~ 52 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQ------DGST----ESPYGY-----------NMGIDYKTTTIL-------------LDG 52 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCC----CCCCCC-----------cceeEEEEEEEE-------------ECC
Confidence 569999999999999999998 2110 011111 011111000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
..+.+.|.||||..... .+.. .....+|.+++|.|.+....... ....+.. ...+..+|.||.|+....
T Consensus 53 ~~~~l~iwDt~G~~~~~-----~l~~-~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~ 126 (189)
T cd04121 53 RRVKLQLWDTSGQGRFC-----TIFR-SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126 (189)
T ss_pred EEEEEEEEeCCCcHHHH-----HHHH-HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc
Confidence 23677899999974322 1211 11237899999999976432211 1222221 123467889999984321
Q ss_pred ----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 ----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..+.......+ .+-..+|+..|.| ++.+++.+.+.+
T Consensus 127 ~v~~~~~~~~a~~~~------------------~~~~e~SAk~g~~-V~~~F~~l~~~i 166 (189)
T cd04121 127 QVATEQAQAYAERNG------------------MTFFEVSPLCNFN-ITESFTELARIV 166 (189)
T ss_pred CCCHHHHHHHHHHcC------------------CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 11111111111 1334589999999 999999887654
No 332
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.40 E-value=8.2e-07 Score=74.78 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.++++|+.|+||||++++|- |..+.-=-+ ..|.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~------G~~~lykKT-----------------QAve~---------------------- 36 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLY------GNDTLYKKT-----------------QAVEF---------------------- 36 (148)
T ss_pred ceeEEecccccCchhHHHHhh------cchhhhccc-----------------ceeec----------------------
Confidence 469999999999999999998 643221000 11111
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCChhhH
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~~g~~ 259 (411)
.|--.|||||-.-....+...+. ....++|.+++|-.+..+.... .....|.+ +.+-|+||.|+.......
T Consensus 37 --~d~~~IDTPGEy~~~~~~Y~aL~--tt~~dadvi~~v~~and~~s~f~p~f~~~~~k---~vIgvVTK~DLaed~dI~ 109 (148)
T COG4917 37 --NDKGDIDTPGEYFEHPRWYHALI--TTLQDADVIIYVHAANDPESRFPPGFLDIGVK---KVIGVVTKADLAEDADIS 109 (148)
T ss_pred --cCccccCCchhhhhhhHHHHHHH--HHhhccceeeeeecccCccccCCccccccccc---ceEEEEecccccchHhHH
Confidence 12246899997655555555542 2334678888888776542211 12222222 245678999997542111
Q ss_pred --HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 260 --LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 260 --l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
...+...| ..|.+.+|+.-..| ++.|++.+...
T Consensus 110 ~~~~~L~eaG-----------------a~~IF~~s~~d~~g-v~~l~~~L~~~ 144 (148)
T COG4917 110 LVKRWLREAG-----------------AEPIFETSAVDNQG-VEELVDYLASL 144 (148)
T ss_pred HHHHHHHHcC-----------------CcceEEEeccCccc-HHHHHHHHHhh
Confidence 12233333 24455567777778 88888776543
No 333
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.40 E-value=2e-06 Score=83.59 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+|+||||++|.|. +.++......+..+. ........+..+... ..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~------~~~~~~~~~~~~~~~-----~~~~~T~~i~~~~~~---------------i~ 57 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLF------NTKLIPSDYPPDPAE-----EHIDKTVEIKSSKAE---------------IE 57 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHH------cCCCccccCCCCccc-----cccCCceEEEEEEEE---------------EE
Confidence 4569999999999999999998 655443322110000 000000111111100 00
Q ss_pred cCC--CCEEEEeCCCCCcch------HHHHH-----------HHHHHHH-h-c---CCCeeEEEeeCcc-h--hhHHHHH
Q 015221 181 KEN--CDLIIVDTSGRHKQE------AALFE-----------EMRQVSE-A-T---NPDLVIFVMDSSI-G--QAAFDQA 233 (411)
Q Consensus 181 ~~~--~d~viIDTaG~~~~~------~~l~~-----------el~~i~~-~-~---~~d~vllVvda~~-g--~~~~~~a 233 (411)
.++ ..+.|+||||..... ..+.. +-..+.. . . ..|.++++++++. + ......+
T Consensus 58 ~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~l 137 (276)
T cd01850 58 ENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFM 137 (276)
T ss_pred ECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHH
Confidence 112 568999999974321 11111 1011111 1 1 3577888888763 3 2234556
Q ss_pred HHHhccCCceEEEEeCCCCCCC
Q 015221 234 QAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 234 ~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
+.+.+.. +..+|+||+|....
T Consensus 138 k~l~~~v-~vi~VinK~D~l~~ 158 (276)
T cd01850 138 KRLSKRV-NIIPVIAKADTLTP 158 (276)
T ss_pred HHHhccC-CEEEEEECCCcCCH
Confidence 6666544 35789999998553
No 334
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.39 E-value=4.9e-06 Score=80.70 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..+|++||-+|+||||++++|. ..+-.....+..+.||-+.. ..+|
T Consensus 178 ~pviavVGYTNaGKsTLikaLT-~Aal~p~drLFATLDpT~h~-----------a~Lp---------------------- 223 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLFATLDPTLHS-----------AHLP---------------------- 223 (410)
T ss_pred CceEEEEeecCccHHHHHHHHH-hhhcCccchhheeccchhhh-----------ccCC----------------------
Confidence 4689999999999999999999 33333445555555554221 0111
Q ss_pred cCCCCEEEEeCCCCCc-chHHHHHHHH-HHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhccCCc--------eEEEE
Q 015221 181 KENCDLIIVDTSGRHK-QEAALFEEMR-QVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSVSV--------GAVIV 247 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~-~~~~l~~el~-~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~~~~--------~~vIl 247 (411)
.|..+++.||-|+.. ....+.+..+ .+.....+|.++-|+|.+.+.. .......+++ +++ ..=|-
T Consensus 224 -sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVd 301 (410)
T KOG0410|consen 224 -SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVD 301 (410)
T ss_pred -CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhc
Confidence 367789999999853 3344555544 3455668999999999987521 1112222322 221 12245
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|..... .+-++ +-...+|++.|.| .++++..+....
T Consensus 302 nkiD~e~~~-----------------------~e~E~-n~~v~isaltgdg-l~el~~a~~~kv 340 (410)
T KOG0410|consen 302 NKIDYEEDE-----------------------VEEEK-NLDVGISALTGDG-LEELLKAEETKV 340 (410)
T ss_pred ccccccccc-----------------------Ccccc-CCccccccccCcc-HHHHHHHHHHHh
Confidence 666643210 01111 2256789999999 999998887765
No 335
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.39 E-value=4.5e-06 Score=84.33 Aligned_cols=175 Identities=19% Similarity=0.250 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH--cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~--~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+-|+++..---||||++-+|...-.. .+.+|.=-..|. ..+.+..|+.+....+ ..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDS---------nDlEkERGITILaKnT-------------av 63 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDS---------NDLEKERGITILAKNT-------------AV 63 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCc---------cchhhhcCcEEEeccc-------------ee
Confidence 44888888899999999999732210 111111000010 1112234555444222 12
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch---hhHHHHHHHHhccCCceEEEEeCCCCC-CC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMDGH-AK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~a~~f~~~~~~~~vIlnK~D~~-~~ 255 (411)
.++++.+-||||||...... |..++...+ |.+++++||..| |.-.-.-+++...+++ ++|+||+|.. ++
T Consensus 64 ~~~~~~INIvDTPGHADFGG----EVERvl~MV--DgvlLlVDA~EGpMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~Ar 136 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGG----EVERVLSMV--DGVLLLVDASEGPMPQTRFVLKKALALGLKP-IVVINKIDRPDAR 136 (603)
T ss_pred ecCCeEEEEecCCCcCCccc----hhhhhhhhc--ceEEEEEEcccCCCCchhhhHHHHHHcCCCc-EEEEeCCCCCCCC
Confidence 35689999999999865443 444555544 899999999877 3333344566666664 7899999973 34
Q ss_pred hhhHH----HHH-------HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 256 GGGAL----SAV-------AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 256 ~g~~l----~~~-------~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
...+. .++ ..+..|+.|.+.-.+...+.+-.+ ..++..|++.+.++.+.-
T Consensus 137 p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~---------~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 137 PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDE---------ADDMAPLFETILDHVPAP 197 (603)
T ss_pred HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccc---------ccchhHHHHHHHHhCCCC
Confidence 32222 222 234556766653333333222111 234899999999999654
No 336
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.39 E-value=3.5e-06 Score=87.32 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hh--HHHHHHHHh-ccCCceEEEEeCCCCCCChhhH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QA--AFDQAQAFK-QSVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~--~~~~a~~f~-~~~~~~~vIlnK~D~~~~~g~~ 259 (411)
..+.||||||. ..+...+ +..+..+|.+++|+|+..+ .. ..+.+.... -.++...+++||+|..... ..
T Consensus 117 ~~i~~IDtPGH----~~fi~~m--~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~-~~ 189 (460)
T PTZ00327 117 RHVSFVDCPGH----DILMATM--LNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA-QA 189 (460)
T ss_pred ceEeeeeCCCH----HHHHHHH--HHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHH-HH
Confidence 46899999995 2444443 2334467999999999864 11 112222111 1234457799999986432 11
Q ss_pred HHHHHhcCCCeEEecccccccc-cccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 260 LSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 260 l~~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
........ +.+.. .....|..++|+..|.| ++.|++.+.+.++..
T Consensus 190 ~~~~~ei~---------~~l~~~~~~~~~iipVSA~~G~n-I~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 190 QDQYEEIR---------NFVKGTIADNAPIIPISAQLKYN-IDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHH---------HHHHhhccCCCeEEEeeCCCCCC-HHHHHHHHHhhCCCC
Confidence 11111000 00000 11356778899999999 999999999877543
No 337
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=1.4e-06 Score=82.42 Aligned_cols=167 Identities=15% Similarity=0.115 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+|||||+++..+. +..- .+.|.|..... +.. .+.+ ..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~------~~~F----~~~y~pTi~~~---~~~--~i~~--------------------~~ 58 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLA------KDCY----PETYVPTVFEN---YTA--GLET--------------------EE 58 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHh------cCCC----CCCcCCceeee---eEE--EEEE--------------------CC
Confidence 568999999999999999987 2210 01122210000 000 0000 01
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~~ 255 (411)
..+.+.|.||||..... .+.. .....+|.+++|.|.+....... ....+... ..+..+|.||+|+...
T Consensus 59 ~~v~l~iwDTaG~e~~~-----~~~~-~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 132 (232)
T cd04174 59 QRVELSLWDTSGSPYYD-----NVRP-LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD 132 (232)
T ss_pred EEEEEEEEeCCCchhhH-----HHHH-HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 24678999999963211 1211 12347899999999976432211 11222211 1245789999998543
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC-CCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~-Gdi~~L~e~i~~~~ 311 (411)
.+...........+|. ...|+.+..-....+-..+|++.|. | ++.+++.+...+
T Consensus 133 ~~~~~~l~~~~~~~Vs-~~e~~~~a~~~~~~~~~EtSAktg~~~-V~e~F~~~~~~~ 187 (232)
T cd04174 133 LSTLMELSNQKQAPIS-YEQGCALAKQLGAEVYLECSAFTSEKS-IHSIFRSASLLC 187 (232)
T ss_pred cchhhhhccccCCcCC-HHHHHHHHHHcCCCEEEEccCCcCCcC-HHHHHHHHHHHH
Confidence 2221111110001111 0112222111111122358999997 6 999999886654
No 338
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.35 E-value=5.8e-06 Score=82.72 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc---CcceeccC------CCCChHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA---KIPFYGSY------TESDPVRIA 172 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~---~v~~~~~~------~~~d~~~i~ 172 (411)
++..+.|.-||||||++++|... .+|++++++-+|....+--..+....... .-+++... +-.+ + .
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~--d-l 79 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVAD--D-F 79 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcH--H-H
Confidence 57889999999999999999863 35889999999865544333333211100 00111100 1111 1 2
Q ss_pred HHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHH--HHHHhcCCCeeEEEeeCcc
Q 015221 173 VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMR--QVSEATNPDLVIFVMDSSI 225 (411)
Q Consensus 173 ~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~--~i~~~~~~d~vllVvda~~ 225 (411)
..++..+. ...+|+|+|.|.|...+. .+...+. .+.....-+.++.|+|+..
T Consensus 80 ~~~l~~l~~~~~~~d~IvIEtsG~a~P~-~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 80 IPTMTKLLARRQRPDHILIETSGLALPK-PLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCCHH-HHHHHhcCccccceEEeeeEEEEEECch
Confidence 23444442 346999999999987543 3333331 1222334577999999964
No 339
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.34 E-value=7.3e-07 Score=86.41 Aligned_cols=89 Identities=16% Similarity=0.221 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc----ch--HHHHHHHhhhhc-Cc---ceeccCCCCChHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR----AG--AFDQLKQNATKA-KI---PFYGSYTESDPVRI 171 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r----~~--a~~qL~~~~~~~-~v---~~~~~~~~~d~~~i 171 (411)
++|.|+|.+||||||++.+|+..|+++| +|++|..|+.. ++ +....+..+... .+ .++......+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~~v~~~s~~~~~~~~~~~~---- 76 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGADVVYGLTDGEWVASGRDRS---- 76 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCcEEEEecCCeEEEEecCCC----
Confidence 5799999999999999999999999999 89999999854 44 222222212110 00 0100011112
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCc
Q 015221 172 AVEGVETFKKENCDLIIVDTSGRHK 196 (411)
Q Consensus 172 ~~~~l~~~~~~~~d~viIDTaG~~~ 196 (411)
..+.+..+. .++|++|||+++...
T Consensus 77 l~~~l~~l~-~~~D~vlVEG~k~~~ 100 (274)
T PRK14493 77 LDDALDDLA-PGMDYAVVEGFKDSR 100 (274)
T ss_pred HHHHHHhhC-cCCCEEEEECCCCCC
Confidence 122334443 479999999999764
No 340
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.34 E-value=2.7e-06 Score=77.37 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=56.8
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCCCChh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~~~~g 257 (411)
..+.+.||||...... +.. .....++.+++|.|.+......+ ....+.. ...+..+|.||+|......
T Consensus 49 ~~l~i~Dt~g~~~~~~-----~~~-~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 49 VQLALWDTAGQEEYER-----LRP-LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEEECCCChhccc-----cch-hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 4578899999642211 111 12236688888888764321111 1122211 1234678899999743210
Q ss_pred hHHHHHHhcCCCeEEec--ccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 GALSAVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~--~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..-. . .+-.++. .++.+..-....+-..+|++.|.| ++.+++.+.+..
T Consensus 123 ~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~~ 172 (187)
T cd04129 123 AKEE---Y--RTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG-VDDVFEAATRAA 172 (187)
T ss_pred cccc---c--ccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC-HHHHHHHHHHHH
Confidence 0000 0 0000000 001110000112345589999999 999999987654
No 341
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.33 E-value=3e-06 Score=92.83 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=42.2
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHH-hccCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAF-KQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f-~~~~~~~~vIlnK~D~~ 253 (411)
..++++.|+||||....... .. .....+|.+++|+|+..|. ......+.. ....+ ..+++||+|..
T Consensus 83 ~~~~~i~liDTPG~~~f~~~----~~--~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 151 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGD----VT--RAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRL 151 (720)
T ss_pred CCceEEEEEeCCCccccHHH----HH--HHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcc
Confidence 45789999999998753322 21 2223679999999998762 222233322 23334 46899999974
No 342
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.9e-05 Score=73.50 Aligned_cols=166 Identities=19% Similarity=0.195 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch------------HHHHHHHhhhh-------------cC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG------------AFDQLKQNATK-------------AK 156 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~------------a~~qL~~~~~~-------------~~ 156 (411)
+.|++.|.-|-||||+..++++.++..|++|++|.|||-.-. -.+.++....- .+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~G 81 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGG 81 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCc
Confidence 469999999999999999999999999999999999984433 23555543320 11
Q ss_pred cceeccCCC-------CChHHHHHHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc--
Q 015221 157 IPFYGSYTE-------SDPVRIAVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-- 225 (411)
Q Consensus 157 v~~~~~~~~-------~d~~~i~~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-- 225 (411)
+.+..++.. ..-+-.+.+.++++. ....|+|+.|..|-..-.. +.--+ +.-.+|++++|.+.-.
T Consensus 82 v~CVEsGGPepGvGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGG-FAmPi----Reg~AdeiyIVtSge~Ma 156 (278)
T COG1348 82 VKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGG-FAMPI----REGYADEIYIVTSGEMMA 156 (278)
T ss_pred eEEeecCCCCCCCCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecc-eeeeh----hcccCcEEEEEecCchHH
Confidence 222111111 111222333344431 1236999999998532110 00001 1114688888877531
Q ss_pred hhhHHHHH---HHHhcc--CCceEEEEeCCCCCCChhhHHHHHHhcCCCeEE
Q 015221 226 GQAAFDQA---QAFKQS--VSVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (411)
Q Consensus 226 g~~~~~~a---~~f~~~--~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~f 272 (411)
-..+-+++ ..|.+. ..+.|+|.|---.+....-...+....|.|+..
T Consensus 157 lYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~e~e~v~~fa~~igt~li~ 208 (278)
T COG1348 157 LYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDRERELVEAFAERLGTQLIH 208 (278)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeEEecCCCcccHHHHHHHHHHHhCCceEe
Confidence 12222333 334432 346899998755433333334455667776543
No 343
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.30 E-value=8.8e-06 Score=77.40 Aligned_cols=79 Identities=14% Similarity=0.258 Sum_probs=47.6
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc-hhhHHHHHHHHhccC-CceEEEEeCCCCCCChhhHHH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI-GQAAFDQAQAFKQSV-SVGAVIVTKMDGHAKGGGALS 261 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g~~~~~~a~~f~~~~-~~~~vIlnK~D~~~~~g~~l~ 261 (411)
.+++|||||+-..-. . +.....+|.+++|..+|. |......+...-+.. -+.++|+||.+.-.. ....
T Consensus 164 ~~~~IIDsaaG~gCp--V------i~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~ie~ 233 (284)
T COG1149 164 ADLLIIDSAAGTGCP--V------IASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--EIEE 233 (284)
T ss_pred cceeEEecCCCCCCh--H------HHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCch--HHHH
Confidence 799999996644322 1 233347899999999874 332222222222222 247999999954222 4566
Q ss_pred HHHhcCCCeEE
Q 015221 262 AVAATKSPVIF 272 (411)
Q Consensus 262 ~~~~~g~Pi~f 272 (411)
.....|.|+..
T Consensus 234 ~~~e~gi~il~ 244 (284)
T COG1149 234 YCEEEGIPILG 244 (284)
T ss_pred HHHHcCCCeeE
Confidence 67777888754
No 344
>PTZ00416 elongation factor 2; Provisional
Probab=98.29 E-value=1.5e-06 Score=96.43 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
++.+.|+||||... +..++ ......+|.+++|+|+..|.. .....+...+.-.+..+++||+|..
T Consensus 91 ~~~i~liDtPG~~~----f~~~~--~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVD----FSSEV--TAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHh----HHHHH--HHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 56789999999863 33333 222346799999999987732 2223333333223468899999986
No 345
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.6e-05 Score=85.89 Aligned_cols=214 Identities=16% Similarity=0.095 Sum_probs=109.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCC--Cce----EeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPA----LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~--kv~----lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~ 173 (411)
+.+.|.++|.-.+|||||+-+|.++-..-.+ +|- ..|. .......|+.+.....
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~-----------~e~EqeRGITI~saa~--------- 68 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDW-----------MEQEQERGITITSAAT--------- 68 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCC-----------cHHHHhcCCEEeeeee---------
Confidence 3467999999999999999999866533211 111 1111 1112223444332111
Q ss_pred HHHHHHhcCC-CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCC
Q 015221 174 EGVETFKKEN-CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 174 ~~l~~~~~~~-~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~ 250 (411)
.+.+.+ +.+.||||||...... |..+... -.|..++|+|+..|-.. ....+...+.--+..+++||+
T Consensus 69 ----s~~~~~~~~iNlIDTPGHVDFt~----EV~rslr--vlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKm 138 (697)
T COG0480 69 ----TLFWKGDYRINLIDTPGHVDFTI----EVERSLR--VLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKM 138 (697)
T ss_pred ----EEEEcCceEEEEeCCCCccccHH----HHHHHHH--hhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECc
Confidence 122444 8999999999875544 3332233 33889999999877321 222222222223468899999
Q ss_pred CCCCC-hhhH-HHHHHhcCCCeEEe----ccccccc---ccccCCcchhh-hhhcCCCC-------H-HHHHHHHHhhCC
Q 015221 251 DGHAK-GGGA-LSAVAATKSPVIFI----GTGEHMD---EFEVFDVKPFV-SRLLGMGD-------W-SGFMDKIHEVVP 312 (411)
Q Consensus 251 D~~~~-~g~~-l~~~~~~g~Pi~fi----~~Ge~i~---~l~~f~p~~~v-s~~~g~Gd-------i-~~L~e~i~~~~~ 312 (411)
|.... .... ..+...++.++.-+ +.++... ++.......+- +...+..+ + .++...+.+.+.
T Consensus 139 DR~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~ 218 (697)
T COG0480 139 DRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALA 218 (697)
T ss_pred cccccChhhhHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHh
Confidence 97543 2222 23334455543332 2212111 11111111111 11111100 1 122222333322
Q ss_pred CCCchHHHHhhhcC-cccHHHHHHHHHHHHccC
Q 015221 313 MDQQPELLQKLSEG-NFTLRIMYEQFQNILKMG 344 (411)
Q Consensus 313 ~~~~~~~~~~~~~~-~f~~~d~~~ql~~~~~~g 344 (411)
+-. .++.++.+.| +.+.+.++..|+.-..-|
T Consensus 219 e~d-e~l~e~yl~g~e~~~~~i~~~i~~~~~~~ 250 (697)
T COG0480 219 EFD-EELMEKYLEGEEPTEEEIKKALRKGTIAG 250 (697)
T ss_pred hcC-HHHHHHHhcCCCccHHHHHHHHHHhhhcc
Confidence 211 5577888877 689999999988776653
No 346
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.28 E-value=2e-06 Score=88.24 Aligned_cols=107 Identities=15% Similarity=0.280 Sum_probs=72.2
Q ss_pred HHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCC-CCCC-----CCCCCCC
Q 015221 30 ECLNE--ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPG-KPSF-----TPKKGKP 101 (411)
Q Consensus 30 ~~l~~--i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~-~~~~-----~~~~~~~ 101 (411)
..+.. +.+.|+++||.++++..+.+++++.+..+. ........+...|.+.+.+.++.. ...+ .....+|
T Consensus 178 ~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg--~~~~~ra~VR~~V~~~L~~~l~~~~a~~y~la~~i~~~k~p 255 (475)
T PRK12337 178 VPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSG--DRVVRRDQLRRKVEALLLEEAGEEVARRYRLLRSIRRPPRP 255 (475)
T ss_pred CCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc--cccccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhccCCC
Confidence 33445 899999999999999999999988763211 111223445566666666655422 0111 1112358
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
.+|+++|++|+||||++.+||..+ |. ..++++|..|-
T Consensus 256 ~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~iR~ 292 (475)
T PRK12337 256 LHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDAVRE 292 (475)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhHHHH
Confidence 999999999999999999999554 22 23788888653
No 347
>PTZ00258 GTP-binding protein; Provisional
Probab=98.28 E-value=2.4e-06 Score=86.55 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc-CcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~-~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
....|+++|.|||||||++|+|. +.++ .++.=|| +++. +....... ....+........
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt------~~~~-~v~n~pf-----------tTi~p~~g~v~~~--d~r~~~l~~~~~~ 79 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALC------KQQV-PAENFPF-----------CTIDPNTARVNVP--DERFDWLCKHFKP 79 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHh------cCcc-cccCCCC-----------CcccceEEEEecc--cchhhHHHHHcCC
Confidence 34569999999999999999998 7665 3333111 1111 11000000 0001100000000
Q ss_pred HhcCCCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 179 FKKENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
.+.-...+.++||||...... .+.. +-+.....+|.+++|+|+.
T Consensus 80 ~~~~~aqi~lvDtpGLv~ga~~g~gLg~--~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 80 KSIVPAQLDITDIAGLVKGASEGEGLGN--AFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cccCCCCeEEEECCCcCcCCcchhHHHH--HHHHHHHHCCEEEEEEeCC
Confidence 011145789999999864322 1211 1223344789999999984
No 348
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.27 E-value=2.7e-06 Score=82.97 Aligned_cols=101 Identities=17% Similarity=0.312 Sum_probs=74.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCC-CC-----CCCCCCeEEEEEc
Q 015221 35 ITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS-FT-----PKKGKPSVIMFVG 108 (411)
Q Consensus 35 i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~-~~-----~~~~~~~vI~lvG 108 (411)
+.+.|..+++...++-++..++.+.+..+. ...-..+.+.+.|++.|.+...+.... +. .....|.+|++.|
T Consensus 22 L~rsL~~~g~~~~~A~~iA~~i~~~L~~~g--~~~i~~~el~~~V~~~L~~~~~~~~~~~y~~~~~i~~~~~p~iIlI~G 99 (301)
T PRK04220 22 LARSLTAAGMKPSIAYEIASEIEEELKKEG--IKEITKEELRRRVYYKLIEKDYEEVAEKYLLWRRIRKSKEPIIILIGG 99 (301)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHcC--CEEeeHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 678899999999999999998888765542 223345667788888888776543211 11 1224678899999
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 109 LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 109 ~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++||||||++.+||.+| |.. .++++|++|
T Consensus 100 ~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 100 ASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 99999999999999877 443 578899877
No 349
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.27 E-value=1.8e-06 Score=83.60 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc-CcceeccCCCCChHHHHHHHHHHHhc-
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFKK- 181 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~-~v~~~~~~~~~d~~~i~~~~l~~~~~- 181 (411)
|+++|.|||||||+.|+|+ |.++ .++.-|| ++.. .......... - .+.+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt------~~~~-~~~n~pf-----------tTi~p~~g~v~v~d~--r----~~~l~~~~~~ 56 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT------KAGA-EAANYPF-----------CTIEPNVGIVPVPDE--R----LDKLAEIVKP 56 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh------CCCC-ccccccc-----------cchhceeeeEEeccc--h----hhhHHHHhCC
Confidence 5799999999999999999 8776 4443111 1111 0000000000 0 011111111
Q ss_pred ---CCCCEEEEeCCCCCcchH---HHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 182 ---ENCDLIIVDTSGRHKQEA---ALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 182 ---~~~d~viIDTaG~~~~~~---~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
-...+.++||||...... .+... -+.....+|.+++|+|+.
T Consensus 57 ~k~~~~~i~lvD~pGl~~~a~~~~glg~~--fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 57 KKIVPATIEFVDIAGLVKGASKGEGLGNK--FLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ceeeeeEEEEEECCCcCCCCchhhHHHHH--HHHHHHhCCEEEEEEeCc
Confidence 123589999999764322 12111 123334789999999985
No 350
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.26 E-value=8.4e-06 Score=71.10 Aligned_cols=91 Identities=22% Similarity=0.186 Sum_probs=55.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHH---hhhhcCcceeccCCCCChHHH-HHHHHHHH
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ---NATKAKIPFYGSYTESDPVRI-AVEGVETF 179 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~---~~~~~~v~~~~~~~~~d~~~i-~~~~l~~~ 179 (411)
++++|+||+||||++..++..+..+|.++..++.+........++.. .....+..++........... ........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999999889999999997654433332211 111222333322222221211 11122333
Q ss_pred hcCCCCEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGR 194 (411)
Q Consensus 180 ~~~~~d~viIDTaG~ 194 (411)
...++++++||.+..
T Consensus 82 ~~~~~~~lviDe~~~ 96 (165)
T cd01120 82 ERGGDDLIILDELTR 96 (165)
T ss_pred hCCCCEEEEEEcHHH
Confidence 445677888887764
No 351
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.25 E-value=9e-05 Score=69.31 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=75.0
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEec---cCcC---cchHHHHHHHhhhhcC-----cceeccCC-------
Q 015221 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC---ADTF---RAGAFDQLKQNATKAK-----IPFYGSYT------- 164 (411)
Q Consensus 104 I~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~---~D~~---r~~a~~qL~~~~~~~~-----v~~~~~~~------- 164 (411)
++++|.. |+|||+++..|+..|+++|++|...- +.+. +......++....... .++.....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~a~ 81 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEETDRNGDALALQRLSGLPLDYEDVNPYRFEEPLSPHLAA 81 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCCCCCcHHHHHHHHHcCCCCChhhcCceeeCCCCCHHHHH
Confidence 5566655 99999999999999999999886643 1111 1112222333221110 01111000
Q ss_pred ---C-CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcc--hHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHH
Q 015221 165 ---E-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ--EAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAF 236 (411)
Q Consensus 165 ---~-~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~--~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f 236 (411)
. ....+...+.++.+ ..+||++|||+||.... ...+. ...+.... ...+++|.++..+. ......+.+
T Consensus 82 ~~~~~~~~~~~i~~~~~~l-~~~~D~viIEg~gg~~~~~~~~~~--~adl~~~l-~~pvilV~~~~~~~i~~~~~~i~~l 157 (222)
T PRK00090 82 ALEGVAIDLEKISAALRRL-AQQYDLVLVEGAGGLLVPLTEDLT--LADLAKQL-QLPVILVVGVKLGCINHTLLTLEAI 157 (222)
T ss_pred HHhCCCCCHHHHHHHHHHH-HhhCCEEEEECCCceeccCCCCCc--HHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHH
Confidence 0 00112233444443 35799999999985321 11100 11112222 24577888876542 112222223
Q ss_pred hc-cCCceEEEEeCCCCC
Q 015221 237 KQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 237 ~~-~~~~~~vIlnK~D~~ 253 (411)
.. .+++.++|+|+++..
T Consensus 158 ~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 158 RARGLPLAGWVANGIPPE 175 (222)
T ss_pred HHCCCCeEEEEEccCCCc
Confidence 22 356779999999865
No 352
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.23 E-value=2.3e-05 Score=81.44 Aligned_cols=189 Identities=15% Similarity=0.054 Sum_probs=97.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh-
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK- 154 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~- 154 (411)
+.+++.+.+-.+-.........++++.++++|.. ||||||++..|+.+|+++ |...-+.| ...+ +.+.--+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp---D~id-~~p~~~~~ 286 (476)
T PRK06278 214 KILKEKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGP---DVRD-IVPSLYLL 286 (476)
T ss_pred HHHHHHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC---Chhh-cCCcceec
Confidence 4556666666664433333444556778999887 999999999999999875 44433311 1111 0000000
Q ss_pred --cCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcch--HHH-HHHHHHHHHhcCCCeeEEEeeCcchh--
Q 015221 155 --AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AAL-FEEMRQVSEATNPDLVIFVMDSSIGQ-- 227 (411)
Q Consensus 155 --~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~--~~l-~~el~~i~~~~~~d~vllVvda~~g~-- 227 (411)
.-.|........++.-...+.++.+...++|++||+-+|-.... ... ......+....+ -.+++|+|+..+.
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g~i~ 365 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKSGIE 365 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCChHH
Confidence 00000000000111111122333333347899999998743211 000 000112333333 3578899987652
Q ss_pred hHHHHH---HHH--hccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEe
Q 015221 228 AAFDQA---QAF--KQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFI 273 (411)
Q Consensus 228 ~~~~~a---~~f--~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi 273 (411)
.....+ ..| ...+++.|+|+|++...........+.+.+|+||.=+
T Consensus 366 ~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~ 416 (476)
T PRK06278 366 GAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGV 416 (476)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEe
Confidence 233322 233 3346788999999985333333345556688888644
No 353
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.22 E-value=4.6e-06 Score=84.91 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=79.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
..++++++|-||||||++.+++. ..+|-+- || . .++.. . -+.++
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vt------radvevq---pY--------------------a-FTTks-L-----~vGH~ 210 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVT------RADDEVQ---PY--------------------A-FTTKL-L-----LVGHL 210 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccc------ccccccC---Cc--------------------c-cccch-h-----hhhhh
Confidence 34679999999999999999887 2222211 11 0 01000 0 00111
Q ss_pred hcCCCCEEEEeCCCCCcchHHHH--HHHHHHHHhc-CCCeeEEEeeCc--chhhHHHHHHHHhccC-----CceEEEEeC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALF--EEMRQVSEAT-NPDLVIFVMDSS--IGQAAFDQAQAFKQSV-----SVGAVIVTK 249 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~--~el~~i~~~~-~~d~vllVvda~--~g~~~~~~a~~f~~~~-----~~~~vIlnK 249 (411)
...--.+.+|||||......+-+ -||..+.... -...|++++|-+ +|....+++.-|+..- ++..+|+||
T Consensus 211 dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK 290 (620)
T KOG1490|consen 211 DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNK 290 (620)
T ss_pred hhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeec
Confidence 11223578999999865443322 2344444332 235688999975 6777777777776532 458999999
Q ss_pred CCCCCCh------hhHHHHHHhc-CCCeEEec
Q 015221 250 MDGHAKG------GGALSAVAAT-KSPVIFIG 274 (411)
Q Consensus 250 ~D~~~~~------g~~l~~~~~~-g~Pi~fi~ 274 (411)
+|..... ...++-...- +.||.-.+
T Consensus 291 ~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 291 IDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred ccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 9975432 2333333333 36776665
No 354
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.21 E-value=8.3e-06 Score=75.57 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|.......++.+.++..++-.. .... .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~-------------------~~~~---------------~ 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKT-------------------IEPY---------------R 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEE-------------------EEeC---------------C
Confidence 56999999999999999999966655555555544422100 0000 0
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhcc---CCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQS---VSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~~---~~~~~vIlnK~D~~~ 254 (411)
...++.++||||..... .+. -.....++.++++.|.+......+. ...+... .-+..++.||+|+..
T Consensus 52 ~~~~~~~~Dt~gq~~~~-----~~~-~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 52 RNIKLQLWDTAGQEEYR-----SLR-PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred CEEEEEeecCCCHHHHH-----HHH-HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 03568999999975322 111 1122478889999998753222111 1122211 124578899999865
Q ss_pred C
Q 015221 255 K 255 (411)
Q Consensus 255 ~ 255 (411)
.
T Consensus 126 ~ 126 (219)
T COG1100 126 E 126 (219)
T ss_pred c
Confidence 5
No 355
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.20 E-value=7.3e-05 Score=77.70 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=88.0
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCC-CCChHHHHHHHHHHH
Q 015221 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPVRIAVEGVETF 179 (411)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~-~~d~~~i~~~~l~~~ 179 (411)
+.++|+|.. ||||||++..|+.+|+++|++|....+++....+...... .+.+...... ..+ .+.+.+.+..+
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~----~g~~~~~ld~~~~~-~~~v~~~~~~~ 78 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAA----TGRPSRNLDSWMMG-EELVRALFARA 78 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHH----hCCCcccCCceeCC-HHHHHHHHHHh
Confidence 347888764 9999999999999999999999999886543322211111 1222111000 011 12334444433
Q ss_pred hcCCCCEEEEeCCCCCcc------hHHHHHHHHHHHHhcCCCeeEEEeeCcchh-hHHHH---HHHHhccCCceEEEEeC
Q 015221 180 KKENCDLIIVDTSGRHKQ------EAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQ---AQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~------~~~l~~el~~i~~~~~~d~vllVvda~~g~-~~~~~---a~~f~~~~~~~~vIlnK 249 (411)
..++|++||+-+|-... +..... .+....+ -.+++|+|+.... ..... ...+...+++.++|+||
T Consensus 79 -~~~~D~vlVEGagGl~~g~~~~~~~~s~a---diA~~l~-~pviLV~~~~~~~~~~a~l~~~~~~~~~~i~i~GvI~N~ 153 (451)
T PRK01077 79 -AQGADIAVIEGVMGLFDGAGSDPDEGSTA---DIAKLLG-APVVLVVDASGMAQSAAALVLGFATFDPDVRIAGVILNR 153 (451)
T ss_pred -cccCCEEEEECCCccccCCccCCCCCCHH---HHHHHhC-CCEEEEECCchHHHHHHHHHHHHHHhCCCCCEEEEEEEC
Confidence 34799999998753311 111111 2233332 3577888876421 11122 23344456788999999
Q ss_pred CCCCCChhhHHHHHHhcCCCeE
Q 015221 250 MDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 250 ~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
+............+..++.|+.
T Consensus 154 v~~~~~~~~l~~~l~~~gipvL 175 (451)
T PRK01077 154 VGSERHYQLLREALERCGIPVL 175 (451)
T ss_pred CCChhHHHHHHHHHHhcCCCEE
Confidence 9653222222334445788864
No 356
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.20 E-value=3.7e-05 Score=72.96 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=36.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
++++++ |..||||||++..||.+++++|++|.++++||..+.
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~ 45 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNAT 45 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCch
Confidence 345555 777999999999999999999999999999998764
No 357
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.20 E-value=1.1e-05 Score=88.55 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCC----ceEeccCcCcchHHHHHHHhhhhc
Q 015221 80 FNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK----PALVCADTFRAGAFDQLKQNATKA 155 (411)
Q Consensus 80 ~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k----v~lV~~D~~r~~a~~qL~~~~~~~ 155 (411)
.+.+.+++... .+.+.|+++|..++|||||+.+|......-..+ ..+ .|.. + .++-+..+-..
T Consensus 7 ~~~~~~~~~~~--------~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~--~D~~-~--~E~~rgiTi~~ 73 (731)
T PRK07560 7 VEKILELMKNP--------EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLA--LDFD-E--EEQARGITIKA 73 (731)
T ss_pred HHHHHHHhhch--------hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCccee--cCcc-H--HHHHhhhhhhc
Confidence 35666676531 124569999999999999999998543210000 011 1111 0 11111111000
Q ss_pred C-cceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHH
Q 015221 156 K-IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQ 232 (411)
Q Consensus 156 ~-v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~ 232 (411)
. +++... ....++.+.||||||..... .+... ....+|.+++|+|+..|.. ....
T Consensus 74 ~~~~~~~~----------------~~~~~~~i~liDtPG~~df~----~~~~~--~l~~~D~avlVvda~~g~~~~t~~~ 131 (731)
T PRK07560 74 ANVSMVHE----------------YEGKEYLINLIDTPGHVDFG----GDVTR--AMRAVDGAIVVVDAVEGVMPQTETV 131 (731)
T ss_pred cceEEEEE----------------ecCCcEEEEEEcCCCccChH----HHHHH--HHHhcCEEEEEEECCCCCCccHHHH
Confidence 0 011000 01135778999999987532 23222 1235699999999987622 2222
Q ss_pred HHH-HhccCCceEEEEeCCCCC
Q 015221 233 AQA-FKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 233 a~~-f~~~~~~~~vIlnK~D~~ 253 (411)
... .....+ ..+++||+|..
T Consensus 132 ~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 132 LRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred HHHHHHcCCC-eEEEEECchhh
Confidence 222 222334 47889999964
No 358
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=1.2e-05 Score=71.02 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCce
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~ 133 (411)
+..|.+.|+|||||||++.+++..|..+|++|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 467999999999999999999999999998886
No 359
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.5e-05 Score=82.13 Aligned_cols=163 Identities=19% Similarity=0.184 Sum_probs=92.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
.+|+++.+.|.---|||||+-++= +-+|+ ..+. |.+ ++..|.... ....+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR------~t~Va--~~Ea---GGI------TQhIGA~~v--~~~~~----------- 52 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIR------KTNVA--AGEA---GGI------TQHIGAYQV--PLDVI----------- 52 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHh------cCccc--cccC---Cce------eeEeeeEEE--EeccC-----------
Confidence 357899999999999999999985 43433 2211 111 111111111 11000
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
....+.|+||||... +..|+. .-..-+|.+++|+++..|. ...+.....+..--+..+.+||+|.....
T Consensus 53 ---~~~~itFiDTPGHeA-----Ft~mRa-RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 53 ---KIPGITFIDTPGHEA-----FTAMRA-RGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred ---CCceEEEEcCCcHHH-----HHHHHh-cCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC
Confidence 235789999999642 223432 2223468999999998772 22222222233223568889999985432
Q ss_pred -hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 -g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
-.....+...|+.. +.+..-....++|++.|.| +++|++.+.-.
T Consensus 124 p~~v~~el~~~gl~~---------E~~gg~v~~VpvSA~tg~G-i~eLL~~ill~ 168 (509)
T COG0532 124 PDKVKQELQEYGLVP---------EEWGGDVIFVPVSAKTGEG-IDELLELILLL 168 (509)
T ss_pred HHHHHHHHHHcCCCH---------hhcCCceEEEEeeccCCCC-HHHHHHHHHHH
Confidence 22223333333221 1122224456789999999 99999987643
No 360
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.6e-05 Score=79.64 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcce--eccCCCCChHHHH-----HH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPF--YGSYTESDPVRIA-----VE 174 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~--~~~~~~~d~~~i~-----~~ 174 (411)
..++++|...+||||++.+|.+.+ ..|+. ...+.++..++..|-.- |.-.......+.- .-
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~-------G~id~-----~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~ 75 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDL-------GEIDK-----RTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDV 75 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHh-------CCCCH-----HHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEE
Confidence 458899999999999999998433 22222 22333444433332221 1000000000000 00
Q ss_pred HHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch----------hhHHHHHHHHhccCCceE
Q 015221 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG----------QAAFDQAQAFKQSVSVGA 244 (411)
Q Consensus 175 ~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g----------~~~~~~a~~f~~~~~~~~ 244 (411)
+...+..+.|.+.|+||||.. ++..+| +..+.++|..+||+||..+ |.-.......--.+.-..
T Consensus 76 ~~~~fet~k~~~tIiDaPGHr----dFvknm--ItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lI 149 (428)
T COG5256 76 AHSKFETDKYNFTIIDAPGHR----DFVKNM--ITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLI 149 (428)
T ss_pred EEEEeecCCceEEEeeCCchH----HHHHHh--hcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEE
Confidence 011233456889999999943 343343 4455678999999999865 222111111111233356
Q ss_pred EEEeCCCCCC
Q 015221 245 VIVTKMDGHA 254 (411)
Q Consensus 245 vIlnK~D~~~ 254 (411)
+.+||+|...
T Consensus 150 VavNKMD~v~ 159 (428)
T COG5256 150 VAVNKMDLVS 159 (428)
T ss_pred EEEEcccccc
Confidence 7799999875
No 361
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.18 E-value=5.1e-06 Score=83.29 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc-CcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA-KIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~-~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..|+++|.|||||||+.|+|+ |.++ .++.= +.+++. +..+...... -.+ .+...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt------~~~~-~v~ny-----------pftTi~p~~G~~~v~d~--r~~----~l~~~~ 58 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT------KAGA-EAANY-----------PFCTIEPNVGVVPVPDP--RLD----KLAEIV 58 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCC-eeccc-----------ccccccceEEEEEeccc--cch----hhHHhc
Confidence 358999999999999999999 7773 44441 122211 1101010000 000 011110
Q ss_pred ----cCCCCEEEEeCCCCCcchHHHHHHH-HHHHHhcCCCeeEEEeeCc
Q 015221 181 ----KENCDLIIVDTSGRHKQEAALFEEM-RQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 181 ----~~~~d~viIDTaG~~~~~~~l~~el-~~i~~~~~~d~vllVvda~ 224 (411)
.-...+.++||||..........-- +-+.....+|.+++|+|+.
T Consensus 59 ~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 59 KPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 0124689999999864322111001 1223344789999999985
No 362
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.17 E-value=2.9e-06 Score=70.83 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa 122 (411)
.|+++|.+||||||++++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHh
Confidence 48899999999999999999
No 363
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.17 E-value=6e-06 Score=74.08 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|+.|+||||++.+++ .+....++.|.-...... ++.+ ..... |+ .+.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s------~k~~v~t~~~~~~~s~k~--kr~t-Tva~D-~g----------------~~~ 63 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALS------DKPLVITEADASSVSGKG--KRPT-TVAMD-FG----------------SIE 63 (187)
T ss_pred ceeEEEEcccccchhhHHHHhh------ccccceeecccccccccc--ccce-eEeec-cc----------------ceE
Confidence 4679999999999999999999 555544544311000000 0000 00011 00 111
Q ss_pred -cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccC-CceEEEEeCCCCCCC
Q 015221 181 -KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSV-SVGAVIVTKMDGHAK 255 (411)
Q Consensus 181 -~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~-~~~~vIlnK~D~~~~ 255 (411)
.+++.+-++||||....+ .+..+.. ..+.-.++++|++.+++. ......+.... .+..|.+||.|+...
T Consensus 64 ~~~~~~v~LfgtPGq~RF~-----fm~~~l~-~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 64 LDEDTGVHLFGTPGQERFK-----FMWEILS-RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA 136 (187)
T ss_pred EcCcceEEEecCCCcHHHH-----HHHHHHh-CCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC
Confidence 134788999999975332 2222221 246778999999877653 33444444333 345777999999544
No 364
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.15 E-value=4.7e-06 Score=92.75 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=40.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
++-+-||||||.. ++..++. .....+|.+++|+|+..|-.. ....+.....-.+..+++||+|..
T Consensus 97 ~~~inliDtPGh~----dF~~e~~--~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHV----DFSSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHH----HHHHHHH--HHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 5667899999974 3333432 223357999999999877321 222222222223458899999986
No 365
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.15 E-value=3.1e-05 Score=71.96 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=55.8
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHH---HhccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQA---FKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~---f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.+.||+|..... .++ .......+.+++|.|.+....... .... ..+.. +..++.||+|...+.
T Consensus 57 ~i~i~~~Dt~g~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~i~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 57 PICFNVWDTAGQEKFG-----GLR-DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENI-PIVLVGNKVDVKDRQ 129 (215)
T ss_pred EEEEEEEECCCchhhh-----hhh-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC-CEEEEEECccCcccc
Confidence 4677899999964221 121 111235688999999875432211 1111 12222 346789999974331
Q ss_pred h--hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 G--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g--~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
- .........+ .....+|+..|.| ++..+..+.+.+
T Consensus 130 ~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-v~~~f~~ia~~l 167 (215)
T PTZ00132 130 VKARQITFHRKKN------------------LQYYDISAKSNYN-FEKPFLWLARRL 167 (215)
T ss_pred CCHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 1 1111111111 1223578888988 888887777665
No 366
>PRK04296 thymidine kinase; Provisional
Probab=98.14 E-value=2.2e-05 Score=71.98 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc--CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~--D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+++++|++|+||||++..++..+..+|++|.++.. |+ |.+. .....+.++++... .-..+.+.. ..+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~-~~~~~~~~~-~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAI-PVSSDTDIF-ELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccce-EeCChHHHH-HHHHh-
Confidence 568899999999999999999999988999999944 54 2221 12234444433210 001111221 12222
Q ss_pred hcCCCCEEEEeCCCCCcc
Q 015221 180 KKENCDLIIVDTSGRHKQ 197 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~ 197 (411)
...++|+|+||.+++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~ 92 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDK 92 (190)
T ss_pred hCCCCCEEEEEccccCCH
Confidence 345799999999988643
No 367
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.14 E-value=3e-06 Score=76.61 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+..++++|.||+||||++|.|. |.+++-++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~------~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLK------RSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHh------CcccceecC
Confidence 4679999999999999999999 877776665
No 368
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.13 E-value=1e-05 Score=74.90 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=59.4
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc--cCCceEEEEeCCCCCCCh-
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ--SVSVGAVIVTKMDGHAKG- 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~--~~~~~~vIlnK~D~~~~~- 256 (411)
.+.+.|.||||..... .+.. .....++.+++|.|.+....... ....+.+ .-.+..+|.||+|+..+.
T Consensus 43 ~~~l~iwDt~G~e~~~-----~l~~-~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v 116 (200)
T smart00176 43 PIRFNVWDTAGQEKFG-----GLRD-GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV 116 (200)
T ss_pred EEEEEEEECCCchhhh-----hhhH-HHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC
Confidence 4678899999974221 1211 12336789999999986532221 1121222 112467889999974321
Q ss_pred -hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 -GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 -g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... .. .+-..+|++.|.| +..+++.+...+
T Consensus 117 ~~~~~~~~~~-----------------~~-~~~~e~SAk~~~~-v~~~F~~l~~~i 153 (200)
T smart00176 117 KAKSITFHRK-----------------KN-LQYYDISAKSNYN-FEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHH-----------------cC-CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 011111110 01 1224589999999 999999887655
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=1.6e-05 Score=74.88 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCC--CceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~--kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+-.+|+++|++++||||++|.|. |. .-.+.+. ...++ .|+-.+......
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~------~~~~~f~~~~~-----------~~~~T-~gi~~~~~~~~~----------- 56 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLF------GTLSGFDVMDT-----------SQQTT-KGIWMWSVPFKL----------- 56 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh------CCCCCeEecCC-----------CCCCc-cceEEEeccccC-----------
Confidence 45789999999999999999999 76 2222222 11112 233322211100
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHH-HH--HHHHHHHhcCCCeeEEEeeCcchhhHHH
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAAL-FE--EMRQVSEATNPDLVIFVMDSSIGQAAFD 231 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l-~~--el~~i~~~~~~d~vllVvda~~g~~~~~ 231 (411)
..+..++++||||....+... .. .+..+.. .-++.+++.++........+
T Consensus 57 ---~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~-llss~~i~n~~~~~~~~~~~ 109 (224)
T cd01851 57 ---GKEHAVLLLDTEGTDGRERGEFEDDARLFALAT-LLSSVLIYNSWETILGDDLA 109 (224)
T ss_pred ---CCcceEEEEecCCcCccccCchhhhhHHHHHHH-HHhCEEEEeccCcccHHHHH
Confidence 125789999999987554321 11 1222222 23678888888765443333
No 370
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.11 E-value=7.7e-06 Score=71.82 Aligned_cols=103 Identities=19% Similarity=0.101 Sum_probs=57.8
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHH---HhccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQA---FKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~---f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+-|.||+|...... ++. .....+|.+++|.|.+..... ...... ......+..+|.||.|.....
T Consensus 47 ~~~l~i~D~~g~~~~~~-----~~~-~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFDS-----LRD-IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp EEEEEEEEETTSGGGHH-----HHH-HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred ccccccccccccccccc-----ccc-ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 46789999999753321 111 123367889999998754321 112222 222123567788999975421
Q ss_pred ----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 ----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 ----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..+.......+ .+-.-+|+..|.| +.+++..+.+.
T Consensus 121 ~v~~~~~~~~~~~~~------------------~~~~e~Sa~~~~~-v~~~f~~~i~~ 159 (162)
T PF00071_consen 121 EVSVEEAQEFAKELG------------------VPYFEVSAKNGEN-VKEIFQELIRK 159 (162)
T ss_dssp SSCHHHHHHHHHHTT------------------SEEEEEBTTTTTT-HHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhC------------------CEEEEEECCCCCC-HHHHHHHHHHH
Confidence 11122222222 2334478888888 88888776654
No 371
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.11 E-value=3.5e-05 Score=74.09 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHH------H-----HHHhh-hhcCcceeccCCCCC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFD------Q-----LKQNA-TKAKIPFYGSYTESD 167 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~------q-----L~~~~-~~~~v~~~~~~~~~d 167 (411)
+-++-.++|--|+||||++|+++ ..+.|+|++++-...--...++ | .+.|- -..|+-+ +.-..+
T Consensus 56 rIPvtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClC--CtVk~~ 131 (391)
T KOG2743|consen 56 RIPVTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLC--CTVKDN 131 (391)
T ss_pred ccceEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEE--EEecch
Confidence 34567889999999999999987 3456899999865331111111 1 11111 1223321 111233
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHH----HHHHhcCCCeeEEEeeCcchhhHHH-------HHHHH
Q 015221 168 PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMR----QVSEATNPDLVIFVMDSSIGQAAFD-------QAQAF 236 (411)
Q Consensus 168 ~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~----~i~~~~~~d~vllVvda~~g~~~~~-------~a~~f 236 (411)
-+....+.++ +...+|++++.|.|...+.. + ..+- .+..-+.-|.++-|+||-.....++ .-.++
T Consensus 132 gvraie~lvq--kkGkfD~IllETTGlAnPaP-i-a~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~ 207 (391)
T KOG2743|consen 132 GVRAIENLVQ--KKGKFDHILLETTGLANPAP-I-ASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEAT 207 (391)
T ss_pred HHHHHHHHHh--cCCCcceEEEeccCCCCcHH-H-HHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHH
Confidence 4444333333 45679999999999865432 2 1222 2233345578999999964321111 11222
Q ss_pred hccCCceEEEEeCCCCCCC
Q 015221 237 KQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 237 ~~~~~~~~vIlnK~D~~~~ 255 (411)
.+..-.+.+|+||.|+...
T Consensus 208 ~QiA~AD~II~NKtDli~~ 226 (391)
T KOG2743|consen 208 RQIALADRIIMNKTDLVSE 226 (391)
T ss_pred HHHhhhheeeeccccccCH
Confidence 2211236889999999776
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.10 E-value=1.9e-05 Score=73.10 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
..++.++|+||+|||+++..++....++|.+++.++++-+.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~ 54 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPE 54 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHH
Confidence 4789999999999999999999999888999999999754443
No 373
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.05 E-value=0.00015 Score=62.70 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=70.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCC
Q 015221 105 MFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENC 184 (411)
Q Consensus 105 ~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~ 184 (411)
.++| +|+||||++..|+..|+++|.+|....+.. .+
T Consensus 4 ~~~~-~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~-------------------------------------------~~ 39 (134)
T cd03109 4 FGTG-TDIGKTVATAILARALKEKGYRVAPLKPVQ-------------------------------------------TY 39 (134)
T ss_pred EeCC-CCcCHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------------------------CC
Confidence 3445 789999999999999999999998776611 16
Q ss_pred CEEEEeCCCCCcch--HHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHh-ccCCceEEEEeCCCCCCCh--h
Q 015221 185 DLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFK-QSVSVGAVIVTKMDGHAKG--G 257 (411)
Q Consensus 185 d~viIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~-~~~~~~~vIlnK~D~~~~~--g 257 (411)
|+++|+.+|..... ... ....+....+ ..+++|.++..+ .+........+ ..+.+.+++.|.++..... .
T Consensus 40 d~vliEGaGg~~~p~~~~~--~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~ 116 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDF--TNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATL 116 (134)
T ss_pred CEEEEECCCccccCCCCCC--CHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhh
Confidence 89999999753210 000 0111222222 246788877654 12222233322 2356789999998864321 1
Q ss_pred hHHHHHHhcCCCeE
Q 015221 258 GALSAVAATKSPVI 271 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~ 271 (411)
....+....+.|+.
T Consensus 117 ~~~~i~~~~gip~L 130 (134)
T cd03109 117 NVETIERLTGIPVL 130 (134)
T ss_pred hHHHHHHhcCCCEE
Confidence 12334455666653
No 374
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.05 E-value=2.9e-05 Score=71.28 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
-+++.||.||||||.++.+-.+...-|+.+-+|..||
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 3677899999999999999999999999999999997
No 375
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.04 E-value=1.2e-05 Score=72.72 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=60.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH----HHHHHHhc--cCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF----DQAQAFKQ--SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~a~~f~~--~~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||+|..... .+... ....++.+++|.|.+...... .....+.. .-.+..+|.||+|+....
T Consensus 48 ~v~l~i~Dt~G~~~~~-----~~~~~-~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 48 TVNLGLWDTAGQEDYN-----RLRPL-SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred EEEEEEEECCCCcccc-----ccchh-hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 4678899999974322 11111 223779999999987542211 12222221 123467889999985431
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .......+|. ...|+.+..-....+-.-+|+..|.| ++.+++.+.+.+
T Consensus 122 ~~~--~~~~~~~~v~-~~~~~~~a~~~~~~~~~E~SAk~~~n-V~~~F~~~~~~~ 172 (176)
T cd04133 122 QYL--ADHPGASPIT-TAQGEELRKQIGAAAYIECSSKTQQN-VKAVFDAAIKVV 172 (176)
T ss_pred hhh--hhccCCCCCC-HHHHHHHHHHcCCCEEEECCCCcccC-HHHHHHHHHHHH
Confidence 100 0000000000 00111111100111234589999999 999999887654
No 376
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.03 E-value=2.8e-05 Score=72.95 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=39.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL 148 (411)
..++.+.|+||+||||++..++....+.|++|..++++.+.+.-+.++
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~ 70 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQI 70 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHH
Confidence 468999999999999999999999988899999999984444334443
No 377
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.03 E-value=6.6e-05 Score=67.80 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
+++.|+||+|||+++.+++....++|.+|..++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 6889999999999999999999899999999998643
No 378
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.02 E-value=7.8e-05 Score=70.40 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
..++++.|+||+||||++..++....++|.++..++.+-
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 367999999999999999999988777899999999963
No 379
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.02 E-value=6.9e-05 Score=69.00 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=58.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|.||||.... ++. .....+|.+++|.|.+....... ....+... -.+..+|.||+|+....
T Consensus 65 ~v~l~iwDTaG~~~~-------~~~-~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 65 SVSLRLWDTFGDHDK-------DRR-FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYAD 136 (195)
T ss_pred EEEEEEEeCCCChhh-------hhc-ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 477899999997421 111 12347899999999875432111 11222221 12457889999974310
Q ss_pred hhHHHHHHhcCCC---------eEEeccccccc-ccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 257 GGALSAVAATKSP---------VIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 257 g~~l~~~~~~g~P---------i~fi~~Ge~i~-~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
.... .....| ......|+.+. .+. .+-..+|++.|.| ++++++.+.+
T Consensus 137 ~~~~---~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~-V~e~F~~~~~ 193 (195)
T cd01873 137 LDEV---NRARRPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFG-VKDVFDNAIR 193 (195)
T ss_pred cchh---hhcccccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCC-HHHHHHHHHH
Confidence 0000 000000 00011222221 111 1334489999999 9999988765
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.01 E-value=0.0001 Score=71.03 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=42.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v 157 (411)
..++.+.|+||+||||++..++...+++|.+++.++.+.-.....+++...+...+.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 467999999999999999999998888899999999973211123345444444433
No 381
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=3e-05 Score=70.29 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++|+|-++||||+++++..+--..+.|+ ...|++|..... ++..
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~Yq---------------------ATIGiDFlskt~-------------~l~d 68 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQ---------------------ATIGIDFLSKTM-------------YLED 68 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhccccc---------------------ceeeeEEEEEEE-------------EEcC
Confidence 568999999999999999998543333332 223454433110 1112
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHH--hcCCCeeEEEeeCcchhhHHHHHHHH------hccC-CceEEEEeCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQAAFDQAQAF------KQSV-SVGAVIVTKMDG 252 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~--~~~~d~vllVvda~~g~~~~~~a~~f------~~~~-~~~~vIlnK~D~ 252 (411)
..+.+-+-||||.. ..+.+.. ..++..+++|.|.+..+.-...-+.. +..- .+..+|-||.|+
T Consensus 69 ~~vrLQlWDTAGQE--------RFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL 140 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQE--------RFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL 140 (221)
T ss_pred cEEEEEEEecccHH--------HHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc
Confidence 24778899999963 1222222 22678899999987543322222111 1111 234667899999
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~ 315 (411)
..+.+..... |++. .++..+ -.-+|+..|.+ +..|+.+|...++..+
T Consensus 141 ~dkrqvs~eE-------------g~~kAkel~a~--f~etsak~g~N-Vk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 141 SDKRQVSIEE-------------GERKAKELNAE--FIETSAKAGEN-VKQLFRRIAAALPGME 188 (221)
T ss_pred cchhhhhHHH-------------HHHHHHHhCcE--EEEecccCCCC-HHHHHHHHHHhccCcc
Confidence 7663222211 1211 122221 12378999999 9999999999987654
No 382
>PRK06526 transposase; Provisional
Probab=98.01 E-value=3.2e-05 Score=74.28 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=51.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|+||+|||+++..|+..+.++|++|..++.. ...+++.... ...... ..+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~----~l~~~l~~~~-----------~~~~~~----~~l~~l-- 157 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA----QWVARLAAAH-----------HAGRLQ----AELVKL-- 157 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH----HHHHHHHHHH-----------hcCcHH----HHHHHh--
Confidence 3489999999999999999999999999998876551 1233332110 000111 112222
Q ss_pred CCCCEEEEeCCCCCcchHH
Q 015221 182 ENCDLIIVDTSGRHKQEAA 200 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~ 200 (411)
.++|++|||..|..+.+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~~ 176 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPE 176 (254)
T ss_pred ccCCEEEEcccccCCCCHH
Confidence 3689999999998765443
No 383
>PHA02542 41 41 helicase; Provisional
Probab=98.00 E-value=0.00043 Score=72.26 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
..+++.|+||+||||++.++|..+++.|++|++++.+--.
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 5688899999999999999999988889999999997533
No 384
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.00 E-value=2.3e-05 Score=70.24 Aligned_cols=46 Identities=37% Similarity=0.487 Sum_probs=41.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
..++.+|=|+|++||||||++++|...|..+|+.+-+.|.|.-|.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~g 65 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHG 65 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhc
Confidence 3456899999999999999999999999999999999999987654
No 385
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.99 E-value=9.5e-05 Score=69.94 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~ 149 (411)
.+++++|++|+||||++.+++..+.++|+++..++.+-......+++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 579999999999999999999888888999999998766555555554
No 386
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.98 E-value=9.5e-06 Score=71.69 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa 122 (411)
...++++|.||+||||++|.|.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~ 121 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALL 121 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHH
Confidence 4679999999999999999999
No 387
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.98 E-value=4.2e-05 Score=67.77 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=54.5
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HH---HHHHHhc-cCCceEEEEeCCCCCCCh
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FD---QAQAFKQ-SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~---~a~~f~~-~~~~~~vIlnK~D~~~~~ 256 (411)
+.+-|-||+|.... . ....+|.+++|.|.+..... .. ....... ...+..+|.||.|+....
T Consensus 47 ~~l~i~D~~g~~~~--~---------~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 47 HLLLIRDEGGAPDA--Q---------FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred EEEEEEECCCCCch--h---------HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 55778999998531 1 11256899999998754221 11 1112211 112457889999973210
Q ss_pred hhHHHHHHhcCCCeEEeccccccc-ccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMD-EFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~-~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
....+.. .|+.+. ... ..+-..+|++.|.| ++++++.+.+.
T Consensus 116 ~~~v~~~-----------~~~~~~~~~~-~~~~~e~SAk~~~~-i~~~f~~~~~~ 157 (158)
T cd04103 116 PRVIDDA-----------RARQLCADMK-RCSYYETCATYGLN-VERVFQEAAQK 157 (158)
T ss_pred CcccCHH-----------HHHHHHHHhC-CCcEEEEecCCCCC-HHHHHHHHHhh
Confidence 0000000 001110 110 01234589999999 99999887643
No 388
>PRK06696 uridine kinase; Validated
Probab=97.97 E-value=1.8e-05 Score=74.35 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
+++.+|+|.|++||||||++.+|+..|...|..+.+++.|-|...
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 357899999999999999999999999888888888888876543
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.97 E-value=1.3e-05 Score=69.70 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.++++|.+||||||++|.|. +.+..-++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~------~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV------GKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCCceeeCC
Confidence 79999999999999999998 665543433
No 390
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.96 E-value=3.7e-05 Score=70.86 Aligned_cols=92 Identities=23% Similarity=0.329 Sum_probs=50.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH--HHHHHHhhhhcCcceeccCCCCChHHHHHHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA--FDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a--~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~ 175 (411)
...|..+++.|+|||||||++..+...+. +....+++.|.+|..- ++.+.......... ........++...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~----~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEASE----LTQKEASRLAEKL 85 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHH----HHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhHH----HHHHHHHHHHHHH
Confidence 35688999999999999999999986655 6688999999987432 33332211111000 1111122344555
Q ss_pred HHHHhcCCCCEEEEeCCCCCc
Q 015221 176 VETFKKENCDLIIVDTSGRHK 196 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~ 196 (411)
++.+...++++++ ||.....
T Consensus 86 ~~~a~~~~~nii~-E~tl~~~ 105 (199)
T PF06414_consen 86 IEYAIENRYNIIF-EGTLSNP 105 (199)
T ss_dssp HHHHHHCT--EEE-E--TTSS
T ss_pred HHHHHHcCCCEEE-ecCCCCh
Confidence 6666677887555 9887654
No 391
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=3.2e-05 Score=65.62 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=52.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~-----g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~ 175 (411)
.+.+++.|++|+||||++.+++..+... ..++..+++...+ ....-........+.+... ...........
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHHHHHHHH
Confidence 4568999999999999999999988753 4556666654433 1112222233333333111 12233333333
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHH
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQV 208 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i 208 (411)
...+...+..+++||-+-... ....+..++.+
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l 111 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF-SDEFLEFLRSL 111 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH-THHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHH
Confidence 334444444577888776542 24444444333
No 392
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.95 E-value=4.9e-05 Score=70.85 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
..++.+.|+||+||||++..+|.....+|.+|+.++.|.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 467999999999999999999999988899999999874
No 393
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.94 E-value=1.2e-05 Score=73.39 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAY 123 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~ 123 (411)
..++++|.|||||||++|.|..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHH
Confidence 4599999999999999999993
No 394
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.94 E-value=3.7e-05 Score=73.36 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
|+++|.|||||||++..|+.++...|.++.+++.|..|
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 78999999999999999999998889999999988654
No 395
>PRK06762 hypothetical protein; Provisional
Probab=97.93 E-value=9.8e-05 Score=65.72 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
|++|+++|+|||||||++..|+..+ |..+.+++.|.+|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 5789999999999999999999776 4467778877655
No 396
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.92 E-value=1.6e-05 Score=77.19 Aligned_cols=32 Identities=38% Similarity=0.479 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+...++++|.|||||||++|+|. +.++.-++.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~------~~~~~~~~~ 148 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLA------GKKVAKVGN 148 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHh------CCCccccCC
Confidence 34679999999999999999998 776665554
No 397
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.92 E-value=0.00012 Score=72.54 Aligned_cols=89 Identities=28% Similarity=0.290 Sum_probs=54.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc-CCCCChHHHHHHHHHH-
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVET- 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~-~~~~d~~~i~~~~l~~- 178 (411)
..++.+.|+||+||||++..++...++.|.+++.+++.- +.++ .++...+++.-.. ....+..+.+...+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~----~~~~--~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH----ALDP--VYARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc----hhHH--HHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 367999999999999999999999999999999998742 1111 1233333321100 0111222222222332
Q ss_pred HhcCCCCEEEEeCCCCC
Q 015221 179 FKKENCDLIIVDTSGRH 195 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~ 195 (411)
.+...+++|+||+....
T Consensus 129 i~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAAL 145 (321)
T ss_pred hhccCCcEEEEcchhhh
Confidence 23457899999996643
No 398
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.91 E-value=5.6e-05 Score=66.52 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
+++++|+|||||||++..|+.++...|.++..++.|..|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4789999999999999999999998888888888887764
No 399
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.91 E-value=1.3e-05 Score=78.34 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.+..++++|.|||||||++|+|. |.+++-++.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~------~~~~~~~~~ 151 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLA------GKKIAKTGN 151 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHh------cCCccccCC
Confidence 34679999999999999999999 877766655
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.89 E-value=1.7e-05 Score=71.41 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+|+++|++||||||++..|+..+...|.++.+++.|..|
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 457899999999999999999999998888899999999775
No 401
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.87 E-value=1.7e-05 Score=69.16 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCce-EeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~-lV~~D~ 139 (411)
++|+++|+.||||||++.+|+.+|.++|++|+ +.+.|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 37999999999999999999999999999999 666654
No 402
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.86 E-value=0.00016 Score=72.67 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
--|+++|.+|+||||++|+|- |.. +.|...+. .. ...++....+ |.. -
T Consensus 36 l~IaV~G~sGsGKSSfINalr------Gl~----~~d~~aA~-tG--v~etT~~~~~-Y~~------------------p 83 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALR------GLG----HEDEGAAP-TG--VVETTMEPTP-YPH------------------P 83 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHT------T------TTSTTS---SS--SHSCCTS-EE-EE-------------------S
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCC----CCCcCcCC-CC--CCcCCCCCee-CCC------------------C
Confidence 459999999999999999996 421 11111000 00 0011111111 110 1
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDG 252 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~ 252 (411)
+-.++++-|.||.....-....-+.. .....-|.+++|.+..-.......++.....-....+|-||+|.
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl~~-~~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYLKE-VKFYRYDFFIIISSERFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHHHH-TTGGG-SEEEEEESSS--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHHHH-ccccccCEEEEEeCCCCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 13579999999985443222222221 12334577666666555555566677776655668899999996
No 403
>PRK07667 uridine kinase; Provisional
Probab=97.86 E-value=2.5e-05 Score=71.78 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+.+|+|.|++||||||++..|+..+...|.++.+++.|.|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 34789999999999999999999999999999999999975
No 404
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.84 E-value=1.5e-05 Score=68.71 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+|+++|+|||||||++..|+..+. ..+++.|.++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHH
Confidence 588999999999999999984332 6678877643
No 405
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.84 E-value=1.6e-05 Score=70.45 Aligned_cols=43 Identities=37% Similarity=0.435 Sum_probs=38.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
+.+|-|+|++||||||++..|...|...|.++.+++.|..|.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 5789999999999999999999999999999999999877654
No 406
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.84 E-value=0.00044 Score=72.33 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=28.2
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 104 I~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++|+|.. +||||+++..|+..|+++|++|+..-.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3566665 899999999999999999988875544
No 407
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=2.1e-05 Score=78.06 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
...++++|-|||||||++|+|+ |++++.++.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~------~k~~~~~s~ 162 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLL------GKKVAKTSN 162 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHh------cccceeeCC
Confidence 3569999999999999999999 999988887
No 408
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.83 E-value=0.00032 Score=69.10 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc-----chHHHHHH-------Hhhhhc---CcceeccCCC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----AGAFDQLK-------QNATKA---KIPFYGSYTE 165 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r-----~~a~~qL~-------~~~~~~---~v~~~~~~~~ 165 (411)
..++++||+..+||||++.-|..|..++|+++..|+.|+.. ||++..+- ..+-.. -+..|+..+.
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~sp 182 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGLTSP 182 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchhhCcccCCceeeeccCCCC
Confidence 35699999999999999999999999999999999999854 44432111 111111 1222232222
Q ss_pred CChHHHHHHH---HH-----HHh---cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHH
Q 015221 166 SDPVRIAVEG---VE-----TFK---KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQ 234 (411)
Q Consensus 166 ~d~~~i~~~~---l~-----~~~---~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~ 234 (411)
....++.... ++ ++. .....=.||||.|... . +-.+.+..+....+.|.++ |++.-. -..+.-+
T Consensus 183 ~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~-~-egy~~llhai~~f~v~vvi-VLg~Er--Ly~~lkk 257 (415)
T KOG2749|consen 183 STNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIE-G-EGYAALLHAIKAFEVDVVI-VLGQER--LYSSLKK 257 (415)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccceec-c-ccHHHHHHHHHHcCccEEE-EeccHH--HHHHHHh
Confidence 2222222111 11 111 1123347999999976 2 3334444455555666544 444321 1111223
Q ss_pred HHhccCCceEEEEeCCCCC-CChhhHHHHHH
Q 015221 235 AFKQSVSVGAVIVTKMDGH-AKGGGALSAVA 264 (411)
Q Consensus 235 ~f~~~~~~~~vIlnK~D~~-~~~g~~l~~~~ 264 (411)
.+.....+..+-+-|.++. .+.+....-..
T Consensus 258 ~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r 288 (415)
T KOG2749|consen 258 DLPPKKNVRVVKLPKSGGVVARSKEVRRKLR 288 (415)
T ss_pred hccccccceEEEecCCCCeEeehHHHHHHHh
Confidence 3332223456668888883 44444444333
No 409
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=97.83 E-value=0.00047 Score=63.33 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=85.4
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEecc---CcCcchHHHHHHHhhhhcC-----cceeccCCCCChHHHH-
Q 015221 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAK-----IPFYGSYTESDPVRIA- 172 (411)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~---D~~r~~a~~qL~~~~~~~~-----v~~~~~~~~~d~~~i~- 172 (411)
.+.++|. +|+|||+++..|+.+|.++|.+|...-. .....+..+-++....... .++ .-.....|.-.+
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPY-TFDEPASPHLAAE 80 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECE-EESSSS-HHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCchHHHHHHHhCCCccccccccc-ccCcccCHHHHhh
Confidence 4777877 5999999999999999999999875432 2212223333333322111 111 101111111111
Q ss_pred -------HHHH--HHHhcCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc
Q 015221 173 -------VEGV--ETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ 238 (411)
Q Consensus 173 -------~~~l--~~~~~~~~d~viIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~ 238 (411)
.+.+ +.+ ..++|++||+.+|.... ...+.. .+....++ .+++|+++..+. +.......+..
T Consensus 81 ~~~~~~~~~~i~~~~l-~~~~D~vlVEGag~~~~~~~~~~~n~---dia~~L~a-~vIlV~~~~~g~i~~~l~~~~~~~~ 155 (199)
T PF13500_consen 81 LEGVDIDLERIIYKEL-AEEYDVVLVEGAGGLMVPIFSGDLNA---DIAKALGA-PVILVASGRLGTINHTLLTIEALKQ 155 (199)
T ss_dssp HHT----HHHHHHHHC-HTTTCEEEEEESSSTTSECCTTEEHH---HHHHHHT--EEEEEEESSTTHHHHHHHHHHHHHC
T ss_pred ccCCcccHHHHHHHHH-hhcCCEEEEeCCcccCcccccChHHH---HHHHHcCC-CEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1111 222 34899999999986432 111111 23333333 478888887652 22333344443
Q ss_pred -cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 239 -SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 239 -~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
..++.|+|+|+++... ..-.+...++.|+.
T Consensus 156 ~g~~v~GvI~N~~~~~~---~~~~l~~~~~i~vl 186 (199)
T PF13500_consen 156 RGIRVLGVILNRVPEPE---NLEALREKSGIPVL 186 (199)
T ss_dssp TTS-EEEEEEEECTCCH---HHHHHHHHHCCEEC
T ss_pred cCCCEEEEEEECCCCHH---HHHHHHHhCCCCEE
Confidence 3578899999976542 33344555677664
No 410
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.83 E-value=0.00019 Score=64.58 Aligned_cols=41 Identities=29% Similarity=0.237 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
++.+|+|+|++||||||++..|+..+...+..+.+++.|..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 45789999999999999999999999888888888877654
No 411
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.82 E-value=0.00012 Score=76.68 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=44.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~ 158 (411)
..++++.|+||+||||++..++...+++|.+++.++.+- ..+|+...+.+.|++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE----s~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE----SRAQLLRNAYSWGID 316 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC----CHHHHHHHHHHcCCC
Confidence 467999999999999999999999999999999999853 345566666666654
No 412
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=8.7e-05 Score=74.78 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHH---HcCCCceEeccC-cCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGWKPALVCAD-TFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEG 175 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~---~~g~kv~lV~~D-~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~ 175 (411)
+.++.+|+..|-+||||++-+|..+=. ..| -|..- ..+.+..+-+ ...++.||.+..+.
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG----~Vk~rk~~~~a~SDWM-~iEkqRGISVtsSV------------ 73 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAG----TVKGRKSGKHAKSDWM-EIEKQRGISVTSSV------------ 73 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcc----eeeeccCCcccccHHH-HHHHhcCceEEeeE------------
Confidence 346799999999999999999986521 112 11110 0111112222 22334455543321
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH--HHHHHhccCCceEEEEeCCCCC
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~--~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
-.+...++-+-|+||||.....++-+.-+ ...|..++|+|+.-|-+... .....+-+--+..-.+||+|..
T Consensus 74 -MqF~Y~~~~iNLLDTPGHeDFSEDTYRtL------tAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~ 146 (528)
T COG4108 74 -MQFDYADCLVNLLDTPGHEDFSEDTYRTL------TAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE 146 (528)
T ss_pred -EEeccCCeEEeccCCCCccccchhHHHHH------HhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc
Confidence 13345578899999999977666544333 24488999999988754422 1222221212345679999987
Q ss_pred CCh
Q 015221 254 AKG 256 (411)
Q Consensus 254 ~~~ 256 (411)
.+.
T Consensus 147 ~rd 149 (528)
T COG4108 147 GRD 149 (528)
T ss_pred cCC
Confidence 664
No 413
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.81 E-value=0.00025 Score=71.76 Aligned_cols=98 Identities=27% Similarity=0.305 Sum_probs=62.8
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 81 ~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
.+|-++|+.. + . +..++.+.|+||+||||++..++..+.+.|.+|+.++..- ..+|++..+.+.++...
T Consensus 69 ~eLD~vLgGG---i--~--~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE----s~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 69 EELDRVLGGG---L--V--PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE----SPEQIKLRADRLGISTE 137 (372)
T ss_pred HHHHHhhcCC---c--c--CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc----CHHHHHHHHHHcCCCcc
Confidence 4556666532 1 1 2367899999999999999999999998888999998742 24566555555554321
Q ss_pred c--cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 015221 161 G--SYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (411)
Q Consensus 161 ~--~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG 193 (411)
. .....+. +.. ++.+...++++++||.-.
T Consensus 138 ~l~l~~e~~l-e~I---~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 138 NLYLLAETNL-EDI---LASIEELKPDLVIIDSIQ 168 (372)
T ss_pred cEEEEccCcH-HHH---HHHHHhcCCcEEEEcchH
Confidence 1 0112222 222 233344579999999853
No 414
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.78 E-value=0.00027 Score=66.27 Aligned_cols=100 Identities=27% Similarity=0.360 Sum_probs=60.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
..++++.|+||+|||+++..++....++ |.+|+.|+.+.-. +++.......+.++ ...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~----~~l~~~~~s~g~d~-----------------~~~ 77 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP----EELIENMKSFGWDL-----------------EEY 77 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H----HHHHHHHHTTTS-H-----------------HHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH----HHHHHHHHHcCCcH-----------------HHH
Confidence 3679999999999999999999888888 9999999985432 33444444444331 111
Q ss_pred hcCCCCEEEEeCCCCC-----cchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 180 KKENCDLIIVDTSGRH-----KQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~-----~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
.. ...+.++|..... .....+...+........+ ..+|+|+-
T Consensus 78 ~~-~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~--~~vVIDsl 124 (226)
T PF06745_consen 78 ED-SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP--DRVVIDSL 124 (226)
T ss_dssp HH-TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS--SEEEEETH
T ss_pred hh-cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC--CEEEEECH
Confidence 11 2246777775542 2234455555544444444 46777763
No 415
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.77 E-value=0.00038 Score=67.00 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCC-CCChHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPVRIAVEGVETF 179 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~-~~d~~~i~~~~l~~~ 179 (411)
.++++.|+||+||||++..++..++.+ |++|+.++.+.-.......+... ..++++..... .....+....++..+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQ--YAGKRLHLPDTVFIYTLEEFDAAFDEF 108 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHH--HhCCCcccCCccccccHHHHHHHHHHh
Confidence 578899999999999999999998876 99999999964221122222211 12333221110 111112222333333
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
.. ...+.++|.++.... +.+...++....... .-++|+|.
T Consensus 109 ~~-~~~l~i~d~~~~~~~-~~i~~~i~~~~~~~~--~~~vvID~ 148 (271)
T cd01122 109 EG-TGRLFMYDSFGEYSM-DSVLEKVRYMAVSHG--IQHIIIDN 148 (271)
T ss_pred cC-CCcEEEEcCCCccCH-HHHHHHHHHHHhcCC--ceEEEECC
Confidence 22 234677788775433 344444444333333 34688887
No 416
>PRK05439 pantothenate kinase; Provisional
Probab=97.77 E-value=6.8e-05 Score=73.84 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHH--cCCCceEeccCcCc
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~--~g~kv~lV~~D~~r 141 (411)
.+.|.+|+|.|+|||||||++..|+..+.+ .|.+|.+++.|-|-
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 446789999999999999999999998876 46899999999753
No 417
>COG4240 Predicted kinase [General function prediction only]
Probab=97.77 E-value=0.0001 Score=68.51 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=39.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcC-CCceEeccCcCc
Q 015221 97 KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTFR 141 (411)
Q Consensus 97 ~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g-~kv~lV~~D~~r 141 (411)
..++|-++.|.||+||||||++..|-..|+.+| ++++-.+.|-+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY 91 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence 356789999999999999999999999999988 799989987644
No 418
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.76 E-value=2.9e-05 Score=68.98 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
++.++|++|+||||++.+|+..+..+|++|+++..|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4789999999999999999999999999999998763
No 419
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=5.2e-05 Score=77.03 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=68.6
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHH---HHHhccCCceEEEEeCCCCCCCh-h
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA---QAFKQSVSVGAVIVTKMDGHAKG-G 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a---~~f~~~~~~~~vIlnK~D~~~~~-g 257 (411)
+.|-+-+|||||.....-+.... ...+.-.++|+||+.|-++...+ .++...+. ..-|+||+|+.+.. .
T Consensus 74 ~~Y~lnlIDTPGHVDFsYEVSRS------LAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Adpe 146 (603)
T COG0481 74 ETYVLNLIDTPGHVDFSYEVSRS------LAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAADPE 146 (603)
T ss_pred CEEEEEEcCCCCccceEEEehhh------HhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCCHH
Confidence 35888999999986543322111 12456789999999986655544 34443333 25589999985432 1
Q ss_pred hHH-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 258 GAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 258 ~~l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
... .+....| +.. .....+|++.|.| +++++|++.+.+|.
T Consensus 147 rvk~eIe~~iG--------------id~-~dav~~SAKtG~g-I~~iLe~Iv~~iP~ 187 (603)
T COG0481 147 RVKQEIEDIIG--------------IDA-SDAVLVSAKTGIG-IEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHHHHHhC--------------CCc-chheeEecccCCC-HHHHHHHHHhhCCC
Confidence 111 1211122 111 2235689999999 99999999999853
No 420
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.76 E-value=7.5e-05 Score=76.20 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa 122 (411)
..|+++|.|||||||++|+|+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt 22 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT 22 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999999
No 421
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.75 E-value=0.00032 Score=69.51 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
.+++.+.|+||+||||++..++...++.|.+++.|++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 36788999999999999999999999999999999984
No 422
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00051 Score=66.18 Aligned_cols=126 Identities=21% Similarity=0.218 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHH--HhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--QNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~--~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
--|.-+|.-.-|||||.+++...|+++|...+ .+ ++|+. +..+..|+.+-...- ..
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~-~~--------y~~id~aPeEk~rGITIntahv-------------ey 70 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEA-KA--------YDQIDNAPEEKARGITINTAHV-------------EY 70 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccc-cc--------hhhhccCchHhhcCceecccee-------------EE
Confidence 34888999999999999999999998763221 11 22221 111223333211110 11
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
...+..|-.||+||.. ++...| +..+.+.|-.++|+.|+.|. ........-.-.++...+.+||+|....
T Consensus 71 et~~rhyahVDcPGHa----DYvKNM--ItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 71 ETANRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred ecCCceEEeccCCChH----HHHHHH--hhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCc
Confidence 1235678999999974 343333 45566789999999998763 2222221111123445667999999664
No 423
>PF13245 AAA_19: Part of AAA domain
Probab=97.75 E-value=6.9e-05 Score=58.39 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc----CCCceEeccCcCcchHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALVCADTFRAGAFDQLKQ 150 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~----g~kv~lV~~D~~r~~a~~qL~~ 150 (411)
.+.++.|+||+||||++.+++.++... +.+|++++. ...+.+.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~---t~~aa~~l~~ 60 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP---TRAAADELRE 60 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC---CHHHHHHHHH
Confidence 456778999999998888888887754 778888876 4445555543
No 424
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.0003 Score=72.68 Aligned_cols=109 Identities=18% Similarity=0.256 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcC-----CCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-----WKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVE 174 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g-----~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~ 174 (411)
+|.+++++||||+||||++..|..++.++- -.+.+|+.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg------------------------------------- 110 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG------------------------------------- 110 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------------------------------------
Confidence 467778999999999999999998876631 12222221
Q ss_pred HHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhc-cCCceEEEEeCCC
Q 015221 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQ-SVSVGAVIVTKMD 251 (411)
Q Consensus 175 ~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~-~~~~~~vIlnK~D 251 (411)
..-.+.++.+|.-. ..|..+.. -+|.|++.+|+..|.+. .+....+.. ..+-..-|+|.+|
T Consensus 111 -------K~RRiTflEcp~Dl-------~~miDvaK--IaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlD 174 (1077)
T COG5192 111 -------KTRRITFLECPSDL-------HQMIDVAK--IADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLD 174 (1077)
T ss_pred -------ceeEEEEEeChHHH-------HHHHhHHH--hhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecc
Confidence 12345777777321 12222232 35999999999988543 222222222 2333455889999
Q ss_pred CCCChhhHHH
Q 015221 252 GHAKGGGALS 261 (411)
Q Consensus 252 ~~~~~g~~l~ 261 (411)
+-.......+
T Consensus 175 lfk~~stLr~ 184 (1077)
T COG5192 175 LFKNPSTLRS 184 (1077)
T ss_pred cccChHHHHH
Confidence 9766443333
No 425
>PRK04328 hypothetical protein; Provisional
Probab=97.74 E-value=0.00075 Score=64.59 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
..++++.|+||+|||+++..++....++|.++..++.+-
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 367999999999999999999988778899999999854
No 426
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.74 E-value=0.0001 Score=70.74 Aligned_cols=41 Identities=32% Similarity=0.494 Sum_probs=37.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
+|+++|.+||||||++.+|+..+.+.|.++++++.|.|..-
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~ 41 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRY 41 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccC
Confidence 48999999999999999999999988999999999988763
No 427
>PRK15453 phosphoribulokinase; Provisional
Probab=97.74 E-value=0.00015 Score=70.17 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++.+|+++|.+||||||++..|+..+...+.++.+++.|.|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678999999999999999999998887788899999998764
No 428
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.72 E-value=5.2e-05 Score=73.87 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=27.6
Q ss_pred CCeeEEEeeCcc-h--hhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 214 PDLVIFVMDSSI-G--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 214 ~d~vllVvda~~-g--~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
.|.+++.++++. + ...+..++.+.+.+++ +-|+.|+|..+.
T Consensus 114 VH~cLYfI~pt~~~L~~~Di~~mk~Ls~~vNv-IPvIaKaD~lt~ 157 (281)
T PF00735_consen 114 VHACLYFIPPTGHGLKPLDIEFMKRLSKRVNV-IPVIAKADTLTP 157 (281)
T ss_dssp EEEEEEEE-TTSSSS-HHHHHHHHHHTTTSEE-EEEESTGGGS-H
T ss_pred cceEEEEEcCCCccchHHHHHHHHHhcccccE-EeEEecccccCH
Confidence 467889999863 3 3455677788776653 668999998654
No 429
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.72 E-value=3.3e-05 Score=70.19 Aligned_cols=39 Identities=31% Similarity=0.460 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+|++.|.+||||||++..|+..+...|.++.+++.|-|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 489999999999999999999999889999999998654
No 430
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.72 E-value=0.00042 Score=64.22 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa 122 (411)
.|+++|.+||||||+++.++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~ 21 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLIC 21 (202)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999998
No 431
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.71 E-value=0.00026 Score=68.57 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=52.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.|||||||++..|..++...+++|.+|+.|..+ -..+. +.....+...-...+..+......
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----------~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----------IDRND-YADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------------TTSS-S--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----------cchhh-hhchhhhHHHHHHHHHHHHHhhcc
Confidence 588999999999999999999999999999999974332 00111 001011111111223334444333
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
-++||+|-.=+.. .+--++-.+..........+-+++.
T Consensus 71 -~~iVI~Dd~nYiK---g~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 71 -DTIVILDDNNYIK---GMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp --SEEEE-S---SH---HHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred -CeEEEEeCCchHH---HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 4899999877653 2223444455555444444444544
No 432
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.70 E-value=0.00025 Score=67.31 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
...+++.|+||+||||++.+++....++|.++..++.+-
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 467999999999999999999988778899999999864
No 433
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.69 E-value=3.7e-05 Score=68.52 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa 122 (411)
++++|+|++||||||++|.|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999
No 434
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.69 E-value=6.1e-05 Score=67.18 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
++++++|++|+||||++.+|+..+..+|++|+++..|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 579999999999999999999999999999999987654
No 435
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.69 E-value=0.00035 Score=63.46 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH----------cCCCceEeccCcCcchHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----------KGWKPALVCADTFRAGAFDQLK 149 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~----------~g~kv~lV~~D~~r~~a~~qL~ 149 (411)
...+++|++|+||||++..++..+.. ++.+|+.++.|-........+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence 57899999999999999999998886 5679999999865433333333
No 436
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.69 E-value=0.00025 Score=62.62 Aligned_cols=108 Identities=22% Similarity=0.249 Sum_probs=64.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|.+.|+.||||||+..+|. |..+--++. ..+- . +..+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~------~~~~~~i~p----------------t~gf---~--------------Iktl~ 56 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLL------GEDTDTISP----------------TLGF---Q--------------IKTLE 56 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhc------CCCccccCC----------------ccce---e--------------eEEEE
Confidence 3569999999999999999998 776433333 0010 0 11122
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh--ccC--CceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK--QSV--SVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~--~~~--~~~~vIlnK~D~~ 253 (411)
.++|.+.+-|..|..... ...+... .+.|..++|+|++..... ....+... +++ .+..++.||.|..
T Consensus 57 ~~~~~L~iwDvGGq~~lr----~~W~nYf--estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 57 YKGYTLNIWDVGGQKTLR----SYWKNYF--ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ecceEEEEEEcCCcchhH----HHHHHhh--hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 457999999999975321 1122222 256899999999754222 22221111 111 2457889999975
No 437
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=97.68 E-value=0.001 Score=72.63 Aligned_cols=141 Identities=14% Similarity=0.181 Sum_probs=77.6
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.+.++|.. |+|||+++..|+.+|+++|++|...-.+...|-..+....+- .........+...+.+..+ .
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~--------~~~~~~~~~~~I~~~~~~l-~ 74 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALL--------ASGQLDELLEEIVARYHAL-A 74 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHH--------hccCChHHHHHHHHHHHHh-c
Confidence 36666655 999999999999999999999998776433322222221110 0011112223334444443 3
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHH----HHHHh--ccCCceEEEEeC--CC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQ----AQAFK--QSVSVGAVIVTK--MD 251 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~----a~~f~--~~~~~~~vIlnK--~D 251 (411)
.+||++|||+++..............+.... ...+++|+++..+ .+..+. ...|. ....+.++|+|| +|
T Consensus 75 ~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L-~~pVILV~~~~~~si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~ 153 (684)
T PRK05632 75 KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL-GAEVVLVSSGGNDTPEELAERIELAASSFGGAKNANILGVIINKLNAP 153 (684)
T ss_pred cCCCEEEEeCcCCCCcCcccCchHHHHHHHh-CCCEEEEECCCCCChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCC
Confidence 5899999999875432100000011222222 2467788877543 222332 22332 235678999999 55
Q ss_pred CC
Q 015221 252 GH 253 (411)
Q Consensus 252 ~~ 253 (411)
..
T Consensus 154 ~~ 155 (684)
T PRK05632 154 VD 155 (684)
T ss_pred HH
Confidence 43
No 438
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.68 E-value=0.00023 Score=70.48 Aligned_cols=147 Identities=20% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc---CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA---DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVE 174 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~---D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~ 174 (411)
.|.+..|+++|+.|.||||++|.|... .+++. |+.|+... .....+..+...-..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~--------~l~~~~~~~~~~~~~~------~~~~~i~~~~~~l~e~------- 78 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT--------SLVDETEIDDIRAEGT------SPTLEIKITKAELEED------- 78 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh--------hccCCCCccCcccccC------CcceEEEeeeeeeecC-------
Confidence 456778999999999999999999933 23332 33333210 0011122111111011
Q ss_pred HHHHHhcCCCCEEEEeCCCCCcc------hHHHHHHHHH-----------HHHh-----cCCCeeEEEeeCcc-hh--hH
Q 015221 175 GVETFKKENCDLIIVDTSGRHKQ------EAALFEEMRQ-----------VSEA-----TNPDLVIFVMDSSI-GQ--AA 229 (411)
Q Consensus 175 ~l~~~~~~~~d~viIDTaG~~~~------~~~l~~el~~-----------i~~~-----~~~d~vllVvda~~-g~--~~ 229 (411)
.-...+.+|||||+... .+.....+.. +.+. ...|.+++.+.++. |- -.
T Consensus 79 ------~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D 152 (373)
T COG5019 79 ------GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD 152 (373)
T ss_pred ------CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH
Confidence 01357899999997431 1111111111 1111 03577888888753 32 33
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCChh------hHHHHHHhcCCCeEE
Q 015221 230 FDQAQAFKQSVSVGAVIVTKMDGHAKGG------GALSAVAATKSPVIF 272 (411)
Q Consensus 230 ~~~a~~f~~~~~~~~vIlnK~D~~~~~g------~~l~~~~~~g~Pi~f 272 (411)
+..++.+.+.+++ +=|+.|.|..+... .....+....+||..
T Consensus 153 Ie~Mk~ls~~vNl-IPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 153 IEAMKRLSKRVNL-IPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHhcccCe-eeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 4567777776653 55889999866521 122334455666654
No 439
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.68 E-value=8e-05 Score=70.23 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=37.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceE-eccCcCc
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL-VCADTFR 141 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~l-V~~D~~r 141 (411)
.+++.+++|+|++||||||++..|+..+...+..+.+ ++.|.|.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 3467899999999999999999999999987777777 8887654
No 440
>PRK12289 GTPase RsgA; Reviewed
Probab=97.68 E-value=4.4e-05 Score=76.65 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa 122 (411)
.+++|+|++||||||++|.|.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLI 193 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHc
Confidence 458999999999999999999
No 441
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.67 E-value=6.4e-05 Score=69.69 Aligned_cols=41 Identities=29% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
.++.+|+|+|++||||||++..|+..+ .+..+.+++.|.|.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 357899999999999999999999887 45688999998764
No 442
>PHA00729 NTP-binding motif containing protein
Probab=97.67 E-value=0.00045 Score=64.94 Aligned_cols=25 Identities=40% Similarity=0.312 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
..|+++|+||+||||++.+|+..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 443
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.67 E-value=0.00041 Score=63.25 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
...|+|.|++||||||++..|+.++...|+++.++..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3679999999999999999999999999998876654
No 444
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.67 E-value=0.00015 Score=66.84 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccC------CCCChHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY------TESDPVRIAVEG 175 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~------~~~d~~~i~~~~ 175 (411)
++.++.|++|+||||++..++..+...|++|.+++. ...|...|.... +++..... ...+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap---T~~Aa~~L~~~~---~~~a~Ti~~~l~~~~~~~~~------ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP---TNKAAKELREKT---GIEAQTIHSFLYRIPNGDDE------ 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES---SHHHHHHHHHHH---TS-EEEHHHHTTEECCEECC------
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC---cHHHHHHHHHhh---CcchhhHHHHHhcCCccccc------
Confidence 567888999999999999999999999999998887 444444454432 22211100 000000
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCC--CeeEEEeeCc
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNP--DLVIFVMDSS 224 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~--d~vllVvda~ 224 (411)
.......++++|||-++..... . +..+...... .-+++|-|..
T Consensus 87 -~~~~~~~~~vliVDEasmv~~~--~---~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 87 -GRPELPKKDVLIVDEASMVDSR--Q---LARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp -SSCC-TSTSEEEESSGGG-BHH--H---HHHHHHHS-T-T-EEEEEE-TT
T ss_pred -ccccCCcccEEEEecccccCHH--H---HHHHHHHHHhcCCEEEEECCcc
Confidence 0000235789999999987543 2 2233333322 3588888875
No 445
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.67 E-value=0.0028 Score=65.28 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=65.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC-CCh--HHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDP--VRIAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~-~d~--~~i~~~~l 176 (411)
...+++.|+||+||||++.++|..++ ++|++|++++.+--.-....++ .+...+++....... -+. ......+.
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl--~~~~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERL--LASKSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHH--HHHHcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35789999999999999999998887 6799999999864322222222 123344443221111 111 12223334
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
..+. +.++.+.|+|+.. -.++...++.+.... .+.-++|+|.
T Consensus 272 ~~l~--~~~l~i~d~~~~t--~~~i~~~~r~~~~~~-~~~~lvvIDy 313 (421)
T TIGR03600 272 DRLS--EKDLYIDDTGGLT--VAQIRSIARRIKRKK-GGLDLIVVDY 313 (421)
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhc-CCCCEEEEec
Confidence 4333 4567777777653 233444444333322 2345777886
No 446
>PRK08760 replicative DNA helicase; Provisional
Probab=97.66 E-value=0.0027 Score=66.42 Aligned_cols=115 Identities=19% Similarity=0.197 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC-Ch--HHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DP--VRIAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~-d~--~~i~~~~l 176 (411)
...+++.|+||+||||++.++|...+. .|++|++.+.+--......++.... .+++........ .. ......++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~--s~i~~~~i~~g~l~~~e~~~~~~a~ 306 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSN--GRINAQRLRTGALEDEDWARVTGAI 306 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhh--CCCcHHHHhcCCCCHHHHHHHHHHH
Confidence 467899999999999999999998864 5899999998654433333332221 222221111111 11 11223344
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
..+. ...+.|-|+|+.. .+.+...++.+.... ..-++|+|.
T Consensus 307 ~~l~--~~~l~I~d~~~~t--~~~I~~~~r~l~~~~--~~~lVvIDy 347 (476)
T PRK08760 307 KMLK--ETKIFIDDTPGVS--PEVLRSKCRRLKREH--DLGLIVIDY 347 (476)
T ss_pred HHHh--cCCEEEeCCCCCC--HHHHHHHHHHHHHhc--CCCEEEEec
Confidence 4443 4567778888754 234444454444332 344777885
No 447
>PRK08233 hypothetical protein; Provisional
Probab=97.66 E-value=0.00013 Score=65.47 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+.+|++.|+|||||||++.+|+..+.. ..++..|.++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~----~~~~~~d~~~ 39 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN----SKALYFDRYD 39 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC----CceEEECCEE
Confidence 478999999999999999999976531 2344455544
No 448
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.65 E-value=0.00093 Score=66.12 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH------cCCCceEeccC-cCcchHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD-TFRAGAF 145 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~------~g~kv~lV~~D-~~r~~a~ 145 (411)
..++-++|+||+|||+++..++...+. .|.+|+.||+. +|+|.-+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi 147 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRI 147 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHH
Confidence 367889999999999999999875542 35688888875 3566543
No 449
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.64 E-value=5.1e-05 Score=67.63 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++++.++|..||||||++.+|...|+.+|++|++|-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 4689999999999999999999999999999999987
No 450
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.64 E-value=0.0019 Score=67.10 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=81.9
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh--cCcceeccCCCCChHHHHHHHHHHHh
Q 015221 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK--AKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 104 I~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~--~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
++|+|.. ||||||++..|+.+|+++|++|...-+=+-...+.- +.....+ .++..+. .+ .+.+.+.+..+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~-~~~~~g~~~~~ld~~~----~~-~~~i~~~~~~~- 74 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMF-HTQATGRPSRNLDSFF----MS-EAQIQECFHRH- 74 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHH-HHHHhCCchhhCCccc----CC-HHHHHHHHHHh-
Confidence 5677766 999999999999999999998887665211111100 0111111 1111110 11 23334444443
Q ss_pred cCCCCEEEEeCCCCCc-----c-hHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHH---HHHHhccCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHK-----Q-EAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQ---AQAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~-----~-~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~---a~~f~~~~~~~~vIlnK~ 250 (411)
..++|++||.-+|-.. . +.....+ +....+ -.+++|+|+..- ...... ...+...+++.++|+||+
T Consensus 75 ~~~~D~viVEGagGl~~g~~p~~~~~s~ad---lAk~l~-~pVILV~~~~~~~~t~~al~~~~~~~~~~i~i~GvIlN~v 150 (449)
T TIGR00379 75 SKGTDYSIIEGVRGLYDGISAITDYGSTAS---VAKALD-APIVLVMNCQRLSRSAAAIVLGYRSFDPGVKLKGVILNRV 150 (449)
T ss_pred cccCCEEEEecCCccccCCCCCCCCccHHH---HHHHhC-CCEEEEECCchHHHHHHHHHHHHHhhCCCCCEEEEEEECC
Confidence 3478999999875321 1 1111112 233222 357888887642 211221 223444567889999999
Q ss_pred CCCCChhhHHHHH-HhcCCCeE
Q 015221 251 DGHAKGGGALSAV-AATKSPVI 271 (411)
Q Consensus 251 D~~~~~g~~l~~~-~~~g~Pi~ 271 (411)
+............ ..+++|+.
T Consensus 151 ~~~~~~~~~~~~i~~~~gipvL 172 (449)
T TIGR00379 151 GSERHLEKLKIAVEPLRGIPIL 172 (449)
T ss_pred CCHHHHHHHHHHHHHhCCCCEE
Confidence 8533221112222 33577764
No 451
>PRK12288 GTPase RsgA; Reviewed
Probab=97.64 E-value=2.6e-05 Score=78.12 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
+++|+|+||||||||+|+|. |...+-+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll------~~~~~~t~ 234 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALL------PEAEILVG 234 (347)
T ss_pred CEEEECCCCCCHHHHHHHhc------cccceeec
Confidence 58999999999999999999 76555443
No 452
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.64 E-value=0.0006 Score=70.74 Aligned_cols=98 Identities=26% Similarity=0.300 Sum_probs=63.1
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 81 ~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
.+|-++|++. + . +..++.+.|+||+||||++..++..+.++|++|+.++..- ..+|+...+.+.+...-
T Consensus 67 ~~LD~~LgGG---i--~--~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee----s~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 67 GELDRVLGGG---L--V--PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE----SASQIKLRAERLGLPSD 135 (446)
T ss_pred HHHHHHhcCC---c--c--CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc----cHHHHHHHHHHcCCChh
Confidence 5566677642 2 1 1357899999999999999999999988899999998742 33455555555544211
Q ss_pred --ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 015221 161 --GSYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (411)
Q Consensus 161 --~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG 193 (411)
......+. + ..++.++..++++++||.-.
T Consensus 136 ~l~~~~e~~l-~---~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 136 NLYLLAETNL-E---AILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred cEEEeCCCCH-H---HHHHHHHhhCCCEEEEechh
Confidence 01112222 2 22233344579999999865
No 453
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.64 E-value=0.0012 Score=61.85 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
...++++|+||+||||++..++....++|.++..++.+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 367999999999999999999987777899999999853
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.64 E-value=7.3e-05 Score=67.52 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
.+.++.|+|++||||||++.+|...+..+|++|+.|-.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 467899999999999999999999999889999998763
No 455
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.64 E-value=0.00059 Score=70.92 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=62.6
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 81 ~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
.+|-++|++. + . +..++++.|.||+||||++..++..+.++|.+|+.++.+- ..+|+...+.+.+++..
T Consensus 81 ~~LD~vLgGG---i--~--~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE----s~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 81 GELDRVLGGG---I--V--PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE----SLQQIKMRAIRLGLPEP 149 (454)
T ss_pred HHHHHHhcCC---c--c--CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC----CHHHHHHHHHHcCCChH
Confidence 5556666532 1 1 2367899999999999999999999988888999998853 23455555555544321
Q ss_pred c--cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCC
Q 015221 161 G--SYTESDPVRIAVEGVETFKKENCDLIIVDTSG 193 (411)
Q Consensus 161 ~--~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG 193 (411)
. .....+... + ...+...++++++||.-.
T Consensus 150 ~l~~~~e~~~~~-I---~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 150 NLYVLSETNWEQ-I---CANIEEENPQACVIDSIQ 180 (454)
T ss_pred HeEEcCCCCHHH-H---HHHHHhcCCcEEEEecch
Confidence 1 111222222 2 233344579999999643
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.64 E-value=0.0004 Score=60.66 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a 144 (411)
+++++|+|||||||++..|+..+ ...+++.|.++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~ 37 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPA 37 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHH
Confidence 37899999999999999998542 45678999988653
No 457
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.63 E-value=0.00044 Score=66.01 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
-+.+.|++|+|||+++.+++.++.++|++|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 48899999999999999999999999999998876
No 458
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.63 E-value=0.00096 Score=56.31 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
..++++|+||+||||++..++..+...+.++..+++....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 4588999999999999999999888778888888875443
No 459
>PTZ00035 Rad51 protein; Provisional
Probab=97.62 E-value=0.001 Score=66.51 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH------cCCCceEeccC-cCcchHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD-TFRAGAFDQL 148 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~------~g~kv~lV~~D-~~r~~a~~qL 148 (411)
..++.++|++|+||||++..++...+. .+.+++.++.. +|++.-+.++
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i 172 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI 172 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH
Confidence 467999999999999999999876652 35577777764 4666544443
No 460
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.62 E-value=0.0011 Score=67.36 Aligned_cols=154 Identities=19% Similarity=0.304 Sum_probs=83.7
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEecc--CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH-
Q 015221 104 IMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF- 179 (411)
Q Consensus 104 I~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~--D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~- 179 (411)
|+|.|+. ||||||++..|...|+++|.+|.-.-+ |---|+ +..........|+ |+.-+-.+.+.++
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~-~H~~atG~~srNL---------D~~mm~~~~v~~~f 72 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPG-YHTAATGRPSRNL---------DSWMMGEEGVRALF 72 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCch-hhhHhhCCccCCC---------chhhcCHHHHHHHH
Confidence 7788877 999999999999999999887764433 322222 1111111111222 2221111222222
Q ss_pred --hcCCCCEEEEeC-CCCCcc-----hHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHHH---HHHhccCCceEEEE
Q 015221 180 --KKENCDLIIVDT-SGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQA---QAFKQSVSVGAVIV 247 (411)
Q Consensus 180 --~~~~~d~viIDT-aG~~~~-----~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~a---~~f~~~~~~~~vIl 247 (411)
-..+.|+.||.- =|.... +..--.. +.+... --|++|+|+... +....++ +.|...+++.|||+
T Consensus 73 ~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~---lAk~l~-~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIl 148 (451)
T COG1797 73 ARAAADADIAVIEGVMGLFDGRGSATDTGSTAD---LAKLLG-APVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVIL 148 (451)
T ss_pred HHhcCCCCEEEEeeccccccCCCCCcCCCCHHH---HHHHhC-CCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEE
Confidence 124677888753 121111 0000111 222221 348899998743 3333344 45555678899999
Q ss_pred eCCCCCCChhhHHHHHHh-cCCCeE
Q 015221 248 TKMDGHAKGGGALSAVAA-TKSPVI 271 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~-~g~Pi~ 271 (411)
|++-......-...++.. +++||.
T Consensus 149 NrVgserH~~llr~Ale~~~gv~vl 173 (451)
T COG1797 149 NRVGSERHYELLRDALEEYTGVPVL 173 (451)
T ss_pred ecCCCHHHHHHHHHHhhhcCCCcEE
Confidence 999876665444455554 677764
No 461
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.62 E-value=0.00096 Score=61.53 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..|+++|++||||||+++.|+.++... +.++..+ .|+.- .... ..+.-+..... ..++ ....+++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~-e~~~E-----~~~~-~~~~~i~q~~v--g~~~-~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI-EDPIE-----FVHE-SKRSLINQREV--GLDT-LSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE-cCCcc-----cccc-Cccceeeeccc--CCCc-cCHHHHHHHHh
Confidence 368999999999999999999888754 3343333 33320 0000 00000100000 1111 11234555555
Q ss_pred cCCCCEEEEeCCC
Q 015221 181 KENCDLIIVDTSG 193 (411)
Q Consensus 181 ~~~~d~viIDTaG 193 (411)
..+.|++++|-+.
T Consensus 72 r~~pd~ii~gEir 84 (198)
T cd01131 72 RQDPDVILVGEMR 84 (198)
T ss_pred cCCcCEEEEcCCC
Confidence 5689999999984
No 462
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.61 E-value=6.3e-05 Score=70.65 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH--cCCCceEeccCcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~--~g~kv~lV~~D~~r 141 (411)
+|+++|++||||||++..|+..+.. .+.++.+++.|-|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4889999999999999999999875 56789999999764
No 463
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.61 E-value=0.00097 Score=66.56 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=34.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCcCc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFR 141 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r 141 (411)
++|+|++|+||||++..|+.+|. ..|++|++++.|-+-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 57899999999999999999997 579999999999654
No 464
>PRK05595 replicative DNA helicase; Provisional
Probab=97.61 E-value=0.0037 Score=64.88 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=64.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC-C--hHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-D--PVRIAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~-d--~~~i~~~~l 176 (411)
...+++.|+||+||||++.++|.+++ ++|++|++++..--.......+ .+...+++........ . .......+.
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~--~a~~~~v~~~~~~~~~l~~~e~~~~~~~~ 278 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKL--LCSEANVDMLRLRTGNLEDKDWENIARAS 278 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHH--HHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 35788899999999999999998765 5799999999864322222221 2333344432211110 1 111222333
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
..+. ...+-|-|+++.. -.++...++.+..... .-++|+|.
T Consensus 279 ~~l~--~~~l~i~d~~~~t--~~~i~~~~r~~~~~~~--~~~vvIDy 319 (444)
T PRK05595 279 GPLA--AAKIFIDDTAGVS--VMEMRSKCRRLKIEHG--IDMILIDY 319 (444)
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhcC--CCEEEEeH
Confidence 3332 3456667787753 2344444554433323 34677775
No 465
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.61 E-value=0.0011 Score=62.52 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~ 140 (411)
.++++.|+||+||||++..++..+..+ |.+|+.++.+--
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 579999999999999999999998887 999999999753
No 466
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.61 E-value=5.7e-05 Score=71.24 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+++.++|++||||||++.+|+.+|..+|++|+++..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 579999999999999999999999999999999953
No 467
>PRK05973 replicative DNA helicase; Provisional
Probab=97.60 E-value=0.00056 Score=64.93 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
...+++.|+||+||||++..++...+++|++|++++.+-
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 356889999999999999999998888899999999853
No 468
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=6.2e-05 Score=63.11 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
+|+|+|+|||||||++..|+..+ | ..+++.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~--~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---G--FPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---T--CEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---C--CeEEEecc
Confidence 58999999999999999999655 3 44556654
No 469
>PLN02796 D-glycerate 3-kinase
Probab=97.60 E-value=0.00032 Score=69.86 Aligned_cols=42 Identities=33% Similarity=0.436 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+|.+|+|+|++||||||++..|...+...|.++..++.|-|.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 578999999999999999999999988778889999888654
No 470
>PRK06893 DNA replication initiation factor; Validated
Probab=97.60 E-value=0.00028 Score=66.61 Aligned_cols=36 Identities=11% Similarity=0.012 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+.+.+.|+||+|||+++..++..+.++|.++..++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 357899999999999999999999888888887776
No 471
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.60 E-value=0.0036 Score=59.10 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=75.5
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCc---------CcchHHHHHHHhhhhc-C----cce-eccC---
Q 015221 103 VIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADT---------FRAGAFDQLKQNATKA-K----IPF-YGSY--- 163 (411)
Q Consensus 103 vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~---------~r~~a~~qL~~~~~~~-~----v~~-~~~~--- 163 (411)
.+.++|- +|+|||+++..|+..|.++|.+|...-.=. ....-...+....... . .|+ +...
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p~~~~~~~a~ 83 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVSSIELPYEAVNPIALSEEESS 83 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccCCccCCCCCchHHHHHHHHhcCCCCCHHhccCeecCCCcCh
Confidence 3677775 599999999999999999998777543210 0111122222211110 0 010 0000
Q ss_pred -CCCChH--HHHHHHHHHHhcCCCCEEEEeCCCCCcch---HHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHH
Q 015221 164 -TESDPV--RIAVEGVETFKKENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQA 235 (411)
Q Consensus 164 -~~~d~~--~i~~~~l~~~~~~~~d~viIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~ 235 (411)
...... +...+.++.+ ..++|++|||.+|..... ...+..+ .... .-.+++|++...|. ...-..+.
T Consensus 84 ~~~~~~i~~~~i~~~~~~l-~~~~D~VlVEGaGgl~~p~~~~~~~~d~---~~~~-~~pvilV~~~~lg~in~~lLt~~~ 158 (231)
T PRK12374 84 VAHSCPINYTLMSNGLANL-SEKVDHVVVEGTGGWRSLMNDLRPLSEW---VVQE-QLPVLMVVGIQEGCINHALLTAQA 158 (231)
T ss_pred HHcCCcCCHHHHHHHHHHH-HhhCCEEEEECCCCcceeccCcccHHHH---HHHh-CCCEEEEECCCcChHHHHHHHHHH
Confidence 011112 2234444443 368999999999932111 0111111 1111 24577777776653 11112233
Q ss_pred Hh-ccCCceEEEEeCCCCC
Q 015221 236 FK-QSVSVGAVIVTKMDGH 253 (411)
Q Consensus 236 f~-~~~~~~~vIlnK~D~~ 253 (411)
+. +.+.+.++|+|+++..
T Consensus 159 l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 159 IANDGLPLIGWVANRINPG 177 (231)
T ss_pred HHhCCCcEEEEEEeCccCc
Confidence 33 3467789999999864
No 472
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00027 Score=66.57 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+-|.+=|..||||||....||..+++-+..|++|++||-.
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 4466667779999999999999999999999999999843
No 473
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00033 Score=70.49 Aligned_cols=97 Identities=27% Similarity=0.345 Sum_probs=70.1
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcc
Q 015221 79 IFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (411)
Q Consensus 79 v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~ 158 (411)
=..||-+.|++.-- +...|++-|-||.|||||+-.++..+++++ +|+.|+. -.+..|++--++|.+++
T Consensus 78 g~~EldRVLGGG~V-------~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG----EES~~QiklRA~RL~~~ 145 (456)
T COG1066 78 GIEELDRVLGGGLV-------PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG----EESLQQIKLRADRLGLP 145 (456)
T ss_pred ChHHHHhhhcCCcc-------cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC----CcCHHHHHHHHHHhCCC
Confidence 34777778875321 135688889999999999999999999988 9999986 56678888888888875
Q ss_pred eecc--CCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q 015221 159 FYGS--YTESDPVRIAVEGVETFKKENCDLIIVDT 191 (411)
Q Consensus 159 ~~~~--~~~~d~~~i~~~~l~~~~~~~~d~viIDT 191 (411)
.... ..+.+..+ -++.+....+++++||.
T Consensus 146 ~~~l~l~aEt~~e~----I~~~l~~~~p~lvVIDS 176 (456)
T COG1066 146 TNNLYLLAETNLED----IIAELEQEKPDLVVIDS 176 (456)
T ss_pred ccceEEehhcCHHH----HHHHHHhcCCCEEEEec
Confidence 4221 12233222 23445557899999996
No 474
>PRK00784 cobyric acid synthase; Provisional
Probab=97.57 E-value=0.0033 Score=66.08 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=28.7
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 103 VIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 103 vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
.++|+|.. |||||+++..|+..|+++|++|...-
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 47888884 99999999999999999998766443
No 475
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00065 Score=72.30 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=71.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+..++++.|.--+|||-++.++- |.+|---.+ -..+.+.|..+| |..-++.....+
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir------~tNVqegea-----------ggitqqIgAt~f-------p~~ni~e~tk~~ 529 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIR------GTNVQEGEA-----------GGITQQIGATYF-------PAENIREKTKEL 529 (1064)
T ss_pred CCceEEEeecccccchHHHHHhh------ccccccccc-----------cceeeecccccc-------chHHHHHHHHHH
Confidence 46789999999999999999987 544432211 011122233322 222121111111
Q ss_pred h------cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCC
Q 015221 180 K------KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 180 ~------~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
. ..-+-+.+|||||... +..++. ..+.-+|.+++|+|.+.|.+ .++....++.+-.+..|.+||+|
T Consensus 530 ~~~~K~~~kvPg~lvIdtpghEs-----FtnlRs-rgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiD 603 (1064)
T KOG1144|consen 530 KKDAKKRLKVPGLLVIDTPGHES-----FTNLRS-RGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKID 603 (1064)
T ss_pred HhhhhhhcCCCeeEEecCCCchh-----hhhhhh-ccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhh
Confidence 1 1235679999999532 223322 12235799999999998833 33344445555456788899999
Q ss_pred C
Q 015221 252 G 252 (411)
Q Consensus 252 ~ 252 (411)
.
T Consensus 604 R 604 (1064)
T KOG1144|consen 604 R 604 (1064)
T ss_pred h
Confidence 5
No 476
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.57 E-value=0.00032 Score=65.55 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcC------CCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKG------WKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g------~kv~lV~~D 138 (411)
..++.++|+||+||||++..++......+ .+|..++.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 36799999999999999999998887766 788888885
No 477
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.56 E-value=0.00014 Score=65.36 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa 122 (411)
...++++|.+|+||||++|.|.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~ 136 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLR 136 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999999
No 478
>PRK05748 replicative DNA helicase; Provisional
Probab=97.56 E-value=0.006 Score=63.39 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC-CChHH--HHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPVR--IAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~-~d~~~--i~~~~l 176 (411)
...+++.|+||+||||++.+++...+ +.|++|++++..--......++. +...+++....... -...+ ....++
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l--~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRML--CAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHH--HHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 35789999999999999999999876 46999999998653333233221 12223332211111 11111 233334
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
..+. +..+.|-|+|+.. -.++...++.+.... +..-++|+|.
T Consensus 281 ~~l~--~~~~~i~d~~~~t--i~~i~~~~r~~~~~~-~~~~~vvIDy 322 (448)
T PRK05748 281 GSLS--DAPIYIDDTPGIK--VTEIRARCRRLAQEH-GGLGLILIDY 322 (448)
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhc-CCCCEEEEcc
Confidence 4333 4566667788753 234444454444332 2344777776
No 479
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.55 E-value=7.9e-05 Score=68.39 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=33.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCC----ceEeccCcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWK----PALVCADTFR 141 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~k----v~lV~~D~~r 141 (411)
+|+|.|++||||||++.+|+..|.+.|.. +.+.+.|.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999988876 6677777654
No 480
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.54 E-value=0.00011 Score=55.99 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+|+++|++|+||||+++.|+..+ .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47899999999999999999988 5667776654
No 481
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00061 Score=61.75 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|-.||||||++-+... |. .+.+. ....|..|+...-..+ .
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk-----~~------F~e~~----------e~TIGaaF~tktv~~~-------------~ 51 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK-----DQ------FHENI----------EPTIGAAFLTKTVTVD-------------D 51 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh-----Cc------ccccc----------ccccccEEEEEEEEeC-------------C
Confidence 4689999999999999998872 10 00000 0011222221100000 1
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhccCCc---eEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQSVSV---GAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~~~~---~~vIlnK~D~~~~ 255 (411)
....+.|=||||..... .+.. .....++.+++|-|.+.... +.+....+++..++ ..+|-||+|+..+
T Consensus 52 ~~ikfeIWDTAGQERy~-----slap-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 52 NTIKFEIWDTAGQERYH-----SLAP-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred cEEEEEEEEcCCccccc-----cccc-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 13567899999974211 0100 11236788999999985432 22334444444443 3456799998662
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCc
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQ 316 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~ 316 (411)
- ..+.......|. +-.-.|+.+|++ ++.++..|.+.++..+.
T Consensus 126 R~V~~~ea~~yAe~~gl------------------l~~ETSAKTg~N-v~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 126 REVEFEEAQAYAESQGL------------------LFFETSAKTGEN-VNEIFQAIAEKLPCSDP 171 (200)
T ss_pred ccccHHHHHHHHHhcCC------------------EEEEEecccccC-HHHHHHHHHHhccCccc
Confidence 1 222222222221 112379999999 99999999999876644
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.53 E-value=9.2e-05 Score=67.99 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+|+++|++||||||+++.|+..+ .+.++.+++.|.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 48999999999999999999887 46689999998754
No 483
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00072 Score=65.47 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=51.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
-++|+|++|+|||.++..++..+.++|++|..++. +...++++.... ..... ..+..+ .
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~----~~L~~~l~~a~~-----------~~~~~----~~l~~l--~ 166 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT----TDLVQKLQVARR-----------ELQLE----SAIAKL--D 166 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH----HHHHHHHHHHHh-----------CCcHH----HHHHHH--h
Confidence 48999999999999999999999999999988876 223333332110 00000 112222 3
Q ss_pred CCCEEEEeCCCCCcchHH
Q 015221 183 NCDLIIVDTSGRHKQEAA 200 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~ 200 (411)
.+|+++||=-|....+..
T Consensus 167 ~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQA 184 (269)
T ss_pred cCCEEEEeccccccCCHH
Confidence 789999999998765544
No 484
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.50 E-value=0.00012 Score=69.84 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa 122 (411)
.+++++|++||||||++|+|.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~ 141 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALD 141 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999999
No 485
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00052 Score=67.38 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
-+.+.|.--|||||++.+|+..-. .+..|..|+. .+ +..+-..|...+.... |..+ -..+
T Consensus 9 N~GiLGHvDSGKTtLarals~~~S-----TaAFDk~pqS---~e--RgiTLDLGFS~~~v~~---parL-------pq~e 68 (522)
T KOG0461|consen 9 NLGILGHVDSGKTTLARALSELGS-----TAAFDKHPQS---TE--RGITLDLGFSTMTVLS---PARL-------PQGE 68 (522)
T ss_pred eeeeEeeccCchHHHHHHHHhhcc-----chhhccCCcc---cc--cceeEeecceeeeccc---cccc-------Cccc
Confidence 488999999999999999983221 1112221111 11 1111111111111111 1100 0123
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHH-hcCCCeeEEEeeCcch---hhHHH--HHHHHhccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSE-ATNPDLVIFVMDSSIG---QAAFD--QAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~-~~~~d~vllVvda~~g---~~~~~--~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
...+.+||+||... + ++.+.. +.--|..++|+|+..| |.+.- ....+. +...+|+||+|....+
T Consensus 69 ~lq~tlvDCPGHas----L---IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c---~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 69 QLQFTLVDCPGHAS----L---IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC---KKLVVVINKIDVLPEN 138 (522)
T ss_pred cceeEEEeCCCcHH----H---HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc---cceEEEEeccccccch
Confidence 47889999999742 2 222222 2234889999999876 22222 223332 2357889999976543
Q ss_pred h--hHHHHHH-hcCCCeEEecccccccccccCCcchhhhhhcC----CCCHHHHHHHHHhhC
Q 015221 257 G--GALSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG----MGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g--~~l~~~~-~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g----~Gdi~~L~e~i~~~~ 311 (411)
. ..++-.. .....+.- ..+..-.|...+|+.-| .+ +.+|.|.+.+.+
T Consensus 139 qr~ski~k~~kk~~KtLe~-------t~f~g~~PI~~vsa~~G~~~~~~-i~eL~e~l~s~i 192 (522)
T KOG0461|consen 139 QRASKIEKSAKKVRKTLES-------TGFDGNSPIVEVSAADGYFKEEM-IQELKEALESRI 192 (522)
T ss_pred hhhhHHHHHHHHHHHHHHh-------cCcCCCCceeEEecCCCccchhH-HHHHHHHHHHhh
Confidence 2 1222111 11100100 11223456777888888 67 899999998877
No 486
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.50 E-value=0.00014 Score=70.99 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=36.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHc--CCCceEeccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~--g~kv~lV~~D~~r 141 (411)
+.|.+|+|+|++||||||++..|...+.+. +.+|.+++.|.|-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 457899999999999999999998888743 4579999999765
No 487
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.49 E-value=0.0003 Score=61.92 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHH
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa 122 (411)
+.+.+.+.+++.. .+....++++|.+|+||||++++|.
T Consensus 85 ~~L~~~l~~~~~~--------~~~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 85 KILRRTIKELAKI--------DGKEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred HHHHHHHHHHHhh--------cCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4455666666531 1233557999999999999999998
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.48 E-value=0.0011 Score=62.08 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v 157 (411)
..++++.|+||+|||+++..++....++|+++..++.+- ..+++.......+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~----~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE----REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC----CHHHHHHHHHHcCC
Confidence 367899999999999999999998888899999999864 23444444444433
No 489
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.48 E-value=0.0022 Score=64.25 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH---c---CCCceEeccC-cCcchHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK---K---GWKPALVCAD-TFRAGAFDQL 148 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~---~---g~kv~lV~~D-~~r~~a~~qL 148 (411)
..++-|+|+||+|||+++-.++...+. . +.+++.|++. +|+|.-..|+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i 180 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI 180 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH
Confidence 367889999999999999999876642 1 2578888884 5676654443
No 490
>PRK09354 recA recombinase A; Provisional
Probab=97.48 E-value=0.0014 Score=65.55 Aligned_cols=88 Identities=25% Similarity=0.273 Sum_probs=54.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc-CcchHHHHHHHhhhhcCcceecc-CCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~-~r~~a~~qL~~~~~~~~v~~~~~-~~~~d~~~i~~~~l~~ 178 (411)
.+++.+.|++|+||||++..++...++.|.+++.|++.- ..+ .++...++++-.. ....+..+.+...+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~-------~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP-------VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH-------HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999842 222 2233333331110 0111222222222333
Q ss_pred H-hcCCCCEEEEeCCCCC
Q 015221 179 F-KKENCDLIIVDTSGRH 195 (411)
Q Consensus 179 ~-~~~~~d~viIDTaG~~ 195 (411)
+ +...+++|+||.....
T Consensus 133 li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HhhcCCCCEEEEeChhhh
Confidence 2 3457899999986643
No 491
>PRK13796 GTPase YqeH; Provisional
Probab=97.48 E-value=0.00029 Score=71.22 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAY 123 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~ 123 (411)
..++++|.|||||||++|+|..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHh
Confidence 3589999999999999999984
No 492
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0004 Score=61.79 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
+++++++|-|||||||.+......+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999888655
No 493
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.46 E-value=0.00056 Score=62.11 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.-++|.|++|+|||.++..++..+.++|++|..++. +...+.++... . .... .+.+..+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~----~~L~~~l~~~~--------~---~~~~----~~~~~~l-- 106 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA----SDLLDELKQSR--------S---DGSY----EELLKRL-- 106 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH----HHHHHHHHCCH--------C---CTTH----CHHHHHH--
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec----Cceeccccccc--------c---ccch----hhhcCcc--
Confidence 349999999999999999999999999999999887 22334333210 0 0011 1122333
Q ss_pred CCCCEEEEeCCCCCcchH
Q 015221 182 ENCDLIIVDTSGRHKQEA 199 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~ 199 (411)
..+|++|+|=-|.....+
T Consensus 107 ~~~dlLilDDlG~~~~~~ 124 (178)
T PF01695_consen 107 KRVDLLILDDLGYEPLSE 124 (178)
T ss_dssp HTSSCEEEETCTSS---H
T ss_pred ccccEecccccceeeecc
Confidence 268999999999865544
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.46 E-value=0.00016 Score=66.57 Aligned_cols=43 Identities=33% Similarity=0.412 Sum_probs=38.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++.+|.++|++||||||++..|+..+...|..+.+++.|..|.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 5678999999999999999999999988888889999888763
No 495
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.46 E-value=8.1e-05 Score=70.06 Aligned_cols=91 Identities=21% Similarity=0.357 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
.-..++++|.|.|||||++.++..--.+ .++.- ++...+| + .
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF-------------------TTLtcIp--G----------------v 103 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF-------------------TTLTCIP--G----------------V 103 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee-------------------eEEEeec--c----------------e
Confidence 3467899999999999999999832221 12211 2222232 1 1
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHH-HHHhcCCCeeEEEeeCcchh
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQ 227 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~-i~~~~~~d~vllVvda~~g~ 227 (411)
+..++..+-++|.||.......--..-+. +..+..+|.+++|+||+...
T Consensus 104 i~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 104 IHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred EEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 12346778999999986433211111111 22233689999999998653
No 496
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.46 E-value=0.0015 Score=67.85 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=32.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
-+.+.|++|+|||+++..++..+...|.++..++++
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 388999999999999999999998889999888874
No 497
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.46 E-value=0.022 Score=58.80 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC-CChHH--HHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPVR--IAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~-~d~~~--i~~~~l 176 (411)
...+++.|+||+||||++.+++...+. .|++|+.++.+--......++.. ...+++....... -...+ ....+.
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~--~~~~v~~~~~~~g~l~~~~~~~~~~a~ 272 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLS--SESRVDSQKLRTGKLSDEDWEKLTSAA 272 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHH--HhcCCCHHHhccCCCCHHHHHHHHHHH
Confidence 357899999999999999999998775 69999999997543333333322 2223332211111 11111 122333
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
..+. +..+.+.|+++.. -.++...++.+..... .-++|+|.
T Consensus 273 ~~l~--~~~l~i~d~~~~~--~~~i~~~i~~~~~~~~--~~~vvID~ 313 (434)
T TIGR00665 273 GKLS--EAPLYIDDTPGLT--ITELRAKARRLKREHG--LGLIVIDY 313 (434)
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHhcC--CCEEEEcc
Confidence 3332 3456666777653 2344444444443333 34677776
No 498
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.0003 Score=59.29 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
|++.|+||+||||++..+|.++ |..+.-+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccc
Confidence 6789999999999999999776 445555555
No 499
>PLN00023 GTP-binding protein; Provisional
Probab=97.44 E-value=0.00063 Score=67.32 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa 122 (411)
..|+++|..||||||++.++.
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~ 42 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIV 42 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 569999999999999999998
No 500
>PRK08506 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.021 Score=59.75 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=67.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC-ChH--HHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES-DPV--RIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~-d~~--~i~~~~l~ 177 (411)
...+++.|+||+||||++.++|....++|++|++++.+--......++. +...+++........ +.. .....+..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rll--a~~s~v~~~~i~~~~l~~~e~~~~~~a~~ 269 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRML--SAKTSIPLQNLRTGDLDDDEWERLSDACD 269 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHH--HHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998888999999999753332233222 223344432211111 111 12233344
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
.+. +..+.|.|+|+.. -..+...++.+... .++.-++|+|.
T Consensus 270 ~l~--~~~l~I~d~~~~t--i~~I~~~~r~l~~~-~~~~~lvvIDy 310 (472)
T PRK08506 270 ELS--KKKLFVYDSGYVN--IHQVRAQLRKLKSQ-HPEIGLAVIDY 310 (472)
T ss_pred HHH--cCCeEEECCCCCC--HHHHHHHHHHHHHh-CCCCCEEEEcC
Confidence 433 3467777887653 23444444444332 23456777886
Done!