Query 015221
Match_columns 411
No_of_seqs 451 out of 3970
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dm5_A SRP54, signal recogniti 100.0 1.6E-82 5.4E-87 646.7 43.8 391 1-394 1-393 (443)
2 3kl4_A SRP54, signal recogniti 100.0 6.2E-78 2.1E-82 612.9 34.1 386 8-394 4-396 (433)
3 2ffh_A Protein (FFH); SRP54, s 100.0 2.7E-70 9.4E-75 555.9 41.3 380 2-394 1-380 (425)
4 2xxa_A Signal recognition part 100.0 1.8E-70 6E-75 560.2 38.8 392 2-394 1-394 (433)
5 2j37_W Signal recognition part 100.0 4.5E-70 1.6E-74 565.0 26.4 393 1-394 1-396 (504)
6 2v3c_C SRP54, signal recogniti 100.0 7.6E-69 2.6E-73 548.0 27.7 388 3-394 1-390 (432)
7 1j8m_F SRP54, signal recogniti 100.0 1.7E-46 5.7E-51 365.9 34.6 293 4-297 1-296 (297)
8 3e70_C DPA, signal recognition 100.0 7.8E-44 2.7E-48 351.4 31.3 296 2-298 7-326 (328)
9 1ls1_A Signal recognition part 100.0 1.4E-42 4.8E-47 338.0 34.5 295 2-298 1-295 (295)
10 1vma_A Cell division protein F 100.0 9.7E-42 3.3E-46 333.4 31.8 272 8-297 28-306 (306)
11 1zu4_A FTSY; GTPase, signal re 100.0 1.8E-41 6.1E-46 333.7 31.7 284 3-296 11-310 (320)
12 2og2_A Putative signal recogni 100.0 2E-39 6.8E-44 323.0 33.0 288 2-296 56-359 (359)
13 1rj9_A FTSY, signal recognitio 100.0 5.3E-40 1.8E-44 321.0 24.5 283 2-296 3-303 (304)
14 2yhs_A FTSY, cell division pro 100.0 2.1E-39 7.1E-44 332.4 29.3 278 14-299 214-497 (503)
15 3b9q_A Chloroplast SRP recepto 100.0 5.4E-37 1.8E-41 299.5 32.3 283 6-296 10-302 (302)
16 2px0_A Flagellar biosynthesis 100.0 7.2E-34 2.5E-38 276.7 25.3 259 24-296 34-296 (296)
17 2jqe_A SRP54, signal recogniti 99.8 1.5E-22 5E-27 168.6 0.9 74 320-394 2-76 (119)
18 1mfq_C SRP54, signal recogniti 99.8 4.6E-21 1.6E-25 161.0 6.5 70 325-394 12-84 (129)
19 1hq1_A Signal recognition part 99.8 1.7E-21 5.7E-26 158.7 1.8 67 327-394 1-67 (105)
20 1qb2_A SRP54, human signal rec 99.8 1E-20 3.5E-25 155.2 5.3 68 327-394 1-71 (109)
21 3p32_A Probable GTPase RV1496/ 99.7 7.8E-17 2.7E-21 160.2 13.5 189 100-312 78-283 (355)
22 3geh_A MNME, tRNA modification 99.6 1.6E-16 5.3E-21 163.3 6.5 234 7-313 147-384 (462)
23 3iev_A GTP-binding protein ERA 99.6 6E-16 2E-20 150.9 9.4 168 98-314 7-183 (308)
24 3gee_A MNME, tRNA modification 99.6 4.5E-17 1.5E-21 167.9 1.3 235 7-312 155-397 (476)
25 2p67_A LAO/AO transport system 99.6 9.3E-15 3.2E-19 144.5 12.9 189 100-311 55-259 (341)
26 2www_A Methylmalonic aciduria 99.6 2.1E-14 7.1E-19 142.5 15.1 188 100-311 73-277 (349)
27 1yrb_A ATP(GTP)binding protein 99.6 5.5E-15 1.9E-19 139.5 9.6 206 100-311 13-255 (262)
28 1wf3_A GTP-binding protein; GT 99.5 9.6E-15 3.3E-19 142.0 9.3 161 101-313 7-173 (301)
29 1xzp_A Probable tRNA modificat 99.5 1.1E-15 3.7E-20 157.8 -0.9 230 8-311 168-403 (482)
30 2wsm_A Hydrogenase expression/ 99.5 8.5E-14 2.9E-18 127.8 10.3 180 101-312 30-213 (221)
31 1ega_A Protein (GTP-binding pr 99.5 6.5E-14 2.2E-18 136.1 9.1 165 100-313 7-175 (301)
32 2qm8_A GTPase/ATPase; G protei 99.5 2.3E-13 7.7E-18 134.4 12.6 188 100-311 54-259 (337)
33 4dzz_A Plasmid partitioning pr 99.4 4.8E-12 1.6E-16 114.6 15.9 152 102-271 2-162 (206)
34 2hjg_A GTP-binding protein ENG 99.4 6.7E-13 2.3E-17 135.3 10.7 157 102-312 4-164 (436)
35 4dhe_A Probable GTP-binding pr 99.4 1E-12 3.6E-17 120.3 10.5 169 100-315 28-213 (223)
36 3cio_A ETK, tyrosine-protein k 99.4 1.4E-11 4.9E-16 119.4 18.4 148 100-255 103-281 (299)
37 1jwy_B Dynamin A GTPase domain 99.4 4.7E-12 1.6E-16 122.7 14.7 119 183-314 130-263 (315)
38 3la6_A Tyrosine-protein kinase 99.4 2.6E-11 9E-16 116.9 19.3 148 100-255 91-269 (286)
39 3end_A Light-independent proto 99.4 9.7E-12 3.3E-16 120.4 16.2 163 99-271 39-241 (307)
40 1mky_A Probable GTP-binding pr 99.4 1.3E-12 4.3E-17 133.4 10.3 157 102-311 2-164 (439)
41 2ph1_A Nucleotide-binding prot 99.4 7.9E-12 2.7E-16 118.4 15.1 146 101-252 18-194 (262)
42 3ea0_A ATPase, para family; al 99.4 5.1E-12 1.8E-16 117.6 13.3 162 100-271 3-202 (245)
43 3i8s_A Ferrous iron transport 99.4 2.4E-12 8.2E-17 123.2 10.9 159 101-314 3-170 (274)
44 3bfv_A CAPA1, CAPB2, membrane 99.4 1.8E-11 6.1E-16 117.1 17.0 147 100-254 81-258 (271)
45 2hjg_A GTP-binding protein ENG 99.3 2.7E-12 9.2E-17 130.8 11.6 187 77-311 153-347 (436)
46 3iby_A Ferrous iron transport 99.3 2.9E-12 1E-16 121.5 11.1 154 102-310 2-164 (256)
47 1hyq_A MIND, cell division inh 99.3 1.6E-11 5.4E-16 115.9 15.5 161 102-271 3-193 (263)
48 2aka_B Dynamin-1; fusion prote 99.3 1.3E-11 4.6E-16 118.3 15.3 113 183-309 124-249 (299)
49 3pqc_A Probable GTP-binding pr 99.3 8.3E-12 2.8E-16 111.1 12.9 160 101-312 23-193 (195)
50 1cp2_A CP2, nitrogenase iron p 99.3 2.5E-11 8.7E-16 114.8 16.9 164 102-270 2-204 (269)
51 1g3q_A MIND ATPase, cell divis 99.3 3.5E-11 1.2E-15 111.4 16.9 161 102-271 3-194 (237)
52 4dcu_A GTP-binding protein ENG 99.3 1.3E-12 4.3E-17 134.0 7.5 158 101-312 23-184 (456)
53 4dcu_A GTP-binding protein ENG 99.3 7.2E-12 2.5E-16 128.4 13.2 185 77-311 173-367 (456)
54 3q9l_A Septum site-determining 99.3 4.8E-11 1.7E-15 112.0 17.0 162 102-271 3-208 (260)
55 2afh_E Nitrogenase iron protei 99.3 4.5E-11 1.5E-15 114.7 17.0 166 101-271 2-208 (289)
56 1svi_A GTP-binding protein YSX 99.3 3.2E-11 1.1E-15 107.8 15.0 159 100-311 22-193 (195)
57 3izq_1 HBS1P, elongation facto 99.3 3E-11 1E-15 128.1 16.4 209 2-254 37-319 (611)
58 2dyk_A GTP-binding protein; GT 99.3 9.9E-12 3.4E-16 107.2 10.2 156 102-312 2-161 (161)
59 2oze_A ORF delta'; para, walke 99.3 1.2E-11 4.2E-16 119.0 11.2 144 102-254 35-226 (298)
60 3k9g_A PF-32 protein; ssgcid, 99.3 3.9E-11 1.3E-15 113.6 14.3 154 99-263 25-220 (267)
61 3a1s_A Iron(II) transport prot 99.3 1.1E-11 3.7E-16 117.7 10.3 156 101-311 5-165 (258)
62 3k53_A Ferrous iron transport 99.3 1.7E-11 6E-16 116.7 11.8 156 101-311 3-164 (271)
63 2e87_A Hypothetical protein PH 99.3 6.5E-11 2.2E-15 117.4 15.7 157 100-311 166-334 (357)
64 2wji_A Ferrous iron transport 99.3 2.6E-11 8.7E-16 106.2 11.3 155 102-311 4-163 (165)
65 3kjh_A CO dehydrogenase/acetyl 99.3 1.8E-11 6.2E-16 113.8 10.7 141 103-252 2-195 (254)
66 2xtp_A GTPase IMAP family memb 99.2 1E-11 3.6E-16 117.1 8.6 173 100-312 21-207 (260)
67 2gj8_A MNME, tRNA modification 99.2 2.4E-11 8.2E-16 107.4 10.2 155 101-312 4-165 (172)
68 3b1v_A Ferrous iron uptake tra 99.2 3.3E-11 1.1E-15 115.3 11.5 156 101-312 3-163 (272)
69 3cwq_A Para family chromosome 99.2 1.6E-10 5.5E-15 105.9 15.6 143 103-270 2-152 (209)
70 2hf9_A Probable hydrogenase ni 99.2 1.6E-11 5.6E-16 112.8 8.6 180 101-311 38-222 (226)
71 1mky_A Probable GTP-binding pr 99.2 3.5E-11 1.2E-15 122.7 11.8 166 100-311 179-353 (439)
72 1wcv_1 SOJ, segregation protei 99.2 6.3E-11 2.1E-15 111.8 12.2 145 100-255 5-184 (257)
73 3lxw_A GTPase IMAP family memb 99.2 4.1E-11 1.4E-15 112.8 9.7 166 100-313 20-208 (247)
74 3zvr_A Dynamin-1; hydrolase, D 99.2 1.3E-10 4.4E-15 125.2 13.9 114 183-309 149-274 (772)
75 2qu8_A Putative nucleolar GTP- 99.2 1.4E-10 4.7E-15 107.1 12.2 163 100-311 28-203 (228)
76 2xj4_A MIPZ; replication, cell 99.2 3.8E-10 1.3E-14 108.3 15.0 115 102-225 5-137 (286)
77 3tr5_A RF-3, peptide chain rel 99.2 1.1E-10 3.7E-15 121.8 11.8 134 101-255 13-149 (528)
78 1fzq_A ADP-ribosylation factor 99.2 4.7E-10 1.6E-14 99.7 14.3 155 100-312 15-177 (181)
79 2lkc_A Translation initiation 99.1 1.2E-10 4E-15 102.2 9.7 159 100-311 7-169 (178)
80 3fwy_A Light-independent proto 99.1 6.9E-10 2.4E-14 108.3 16.0 164 99-272 46-249 (314)
81 2wjg_A FEOB, ferrous iron tran 99.1 1.1E-10 3.9E-15 103.5 9.4 159 101-314 7-170 (188)
82 2x2e_A Dynamin-1; nitration, h 99.1 1.9E-10 6.6E-15 113.9 11.5 115 183-309 129-254 (353)
83 2j69_A Bacterial dynamin-like 99.1 3.3E-10 1.1E-14 121.9 14.2 84 33-139 18-101 (695)
84 3ug7_A Arsenical pump-driving 99.1 6.6E-10 2.3E-14 110.0 14.8 45 102-147 27-71 (349)
85 2h5e_A Peptide chain release f 99.1 1.4E-10 4.9E-15 120.9 10.3 135 101-255 13-149 (529)
86 2qtf_A Protein HFLX, GTP-bindi 99.1 4.3E-10 1.5E-14 112.0 13.0 186 77-311 154-352 (364)
87 2h17_A ADP-ribosylation factor 99.1 2.3E-10 8E-15 101.3 9.9 153 100-310 20-180 (181)
88 2hxs_A RAB-26, RAS-related pro 99.1 4.6E-10 1.6E-14 98.4 11.5 155 101-313 6-173 (178)
89 1r8s_A ADP-ribosylation factor 99.1 1.5E-09 5.2E-14 93.6 14.3 152 103-312 2-161 (164)
90 3zq6_A Putative arsenical pump 99.1 1.4E-09 4.7E-14 106.5 15.5 43 102-145 15-57 (324)
91 2nzj_A GTP-binding protein REM 99.1 4.7E-10 1.6E-14 97.9 10.9 153 101-311 4-167 (175)
92 1zj6_A ADP-ribosylation factor 99.1 7.9E-10 2.7E-14 98.3 12.5 155 101-313 16-178 (187)
93 2ce2_X GTPase HRAS; signaling 99.1 5.7E-10 1.9E-14 95.9 11.1 150 102-311 4-163 (166)
94 3cph_A RAS-related protein SEC 99.1 3E-10 1E-14 102.8 9.6 152 101-311 20-180 (213)
95 4bas_A ADP-ribosylation factor 99.1 1.3E-10 4.6E-15 103.8 7.2 156 100-311 16-187 (199)
96 1upt_A ARL1, ADP-ribosylation 99.1 2.4E-10 8E-15 99.4 8.5 155 101-312 7-168 (171)
97 2efe_B Small GTP-binding prote 99.1 4.3E-10 1.5E-14 98.8 10.1 154 101-313 12-175 (181)
98 1zd9_A ADP-ribosylation factor 99.1 5.8E-10 2E-14 99.5 11.1 155 101-312 22-184 (188)
99 1ky3_A GTP-binding protein YPT 99.1 2.5E-10 8.5E-15 100.1 8.5 159 100-311 7-176 (182)
100 1z0f_A RAB14, member RAS oncog 99.1 3.8E-10 1.3E-14 98.6 9.6 152 101-311 15-176 (179)
101 1r2q_A RAS-related protein RAB 99.1 4.9E-10 1.7E-14 96.9 10.1 154 101-313 6-169 (170)
102 1c1y_A RAS-related protein RAP 99.1 3.4E-10 1.2E-14 97.9 9.0 151 102-311 4-165 (167)
103 2h57_A ADP-ribosylation factor 99.1 3E-10 1E-14 101.3 8.8 156 100-311 20-185 (190)
104 2erx_A GTP-binding protein DI- 99.1 5E-10 1.7E-14 97.1 9.9 152 102-313 4-167 (172)
105 3q72_A GTP-binding protein RAD 99.1 4.4E-10 1.5E-14 97.3 9.4 149 102-311 3-162 (166)
106 2b6h_A ADP-ribosylation factor 99.1 1.5E-09 5E-14 97.5 13.2 155 100-312 28-190 (192)
107 3tw8_B RAS-related protein RAB 99.1 2E-10 6.9E-15 100.6 7.3 152 101-311 9-169 (181)
108 3tkl_A RAS-related protein RAB 99.1 5.3E-10 1.8E-14 99.6 10.1 152 101-311 16-177 (196)
109 1f6b_A SAR1; gtpases, N-termin 99.1 4.6E-10 1.6E-14 101.4 9.7 162 101-311 25-197 (198)
110 1byi_A Dethiobiotin synthase; 99.1 1.8E-08 6.1E-13 92.4 20.5 165 102-271 2-200 (224)
111 1u8z_A RAS-related protein RAL 99.1 2.8E-10 9.7E-15 98.1 7.9 151 101-311 4-165 (168)
112 3pg5_A Uncharacterized protein 99.1 1.2E-09 4.2E-14 108.4 13.5 43 102-144 2-45 (361)
113 1ek0_A Protein (GTP-binding pr 99.1 4.5E-10 1.5E-14 97.2 9.1 152 102-312 4-168 (170)
114 1ksh_A ARF-like protein 2; sma 99.1 1.1E-09 3.8E-14 97.0 11.7 155 100-312 17-179 (186)
115 2fg5_A RAB-22B, RAS-related pr 99.0 6.2E-10 2.1E-14 99.6 10.0 154 101-313 23-186 (192)
116 1m2o_B GTP-binding protein SAR 99.0 6.1E-10 2.1E-14 99.8 9.9 159 101-310 23-189 (190)
117 3clv_A RAB5 protein, putative; 99.0 4.6E-10 1.6E-14 99.9 8.9 103 184-311 93-202 (208)
118 1g16_A RAS-related protein SEC 99.0 6E-10 2E-14 96.6 9.3 151 102-311 4-163 (170)
119 1z0j_A RAB-22, RAS-related pro 99.0 3.6E-10 1.2E-14 98.0 7.7 153 101-312 6-168 (170)
120 2il1_A RAB12; G-protein, GDP, 99.0 3.3E-10 1.1E-14 101.6 7.6 157 101-311 26-188 (192)
121 2woo_A ATPase GET3; tail-ancho 99.0 3E-09 1E-13 104.4 15.1 39 102-140 20-58 (329)
122 2p5s_A RAS and EF-hand domain 99.0 1.6E-09 5.5E-14 97.4 12.2 153 100-311 27-195 (199)
123 3iqw_A Tail-anchored protein t 99.0 1.8E-09 6E-14 106.3 13.3 40 101-140 16-55 (334)
124 2cxx_A Probable GTP-binding pr 99.0 1.9E-09 6.5E-14 95.4 12.4 157 103-311 3-182 (190)
125 2y8e_A RAB-protein 6, GH09086P 99.0 3.4E-10 1.2E-14 99.0 7.4 152 102-312 15-176 (179)
126 2woj_A ATPase GET3; tail-ancho 99.0 1.7E-09 6E-14 107.2 13.3 42 102-144 19-62 (354)
127 4dsu_A GTPase KRAS, isoform 2B 99.0 7.2E-10 2.5E-14 97.9 9.4 151 101-311 4-164 (189)
128 1kao_A RAP2A; GTP-binding prot 99.0 5.9E-10 2E-14 96.0 8.7 150 102-311 4-164 (167)
129 1moz_A ARL1, ADP-ribosylation 99.0 3E-10 1E-14 100.1 6.8 154 100-311 17-178 (183)
130 1z2a_A RAS-related protein RAB 99.0 2.9E-10 9.9E-15 98.4 6.5 152 101-311 5-165 (168)
131 2a9k_A RAS-related protein RAL 99.0 5.8E-10 2E-14 98.2 8.6 151 101-311 18-179 (187)
132 3q85_A GTP-binding protein REM 99.0 6.1E-10 2.1E-14 96.7 8.3 152 102-311 3-165 (169)
133 2g6b_A RAS-related protein RAB 99.0 7.9E-10 2.7E-14 97.0 9.0 153 101-311 10-172 (180)
134 3con_A GTPase NRAS; structural 99.0 8.8E-10 3E-14 98.0 9.4 151 101-311 21-181 (190)
135 2oil_A CATX-8, RAS-related pro 99.0 6.2E-10 2.1E-14 99.3 8.2 152 101-311 25-186 (193)
136 3bc1_A RAS-related protein RAB 99.0 1.2E-09 4.2E-14 96.6 10.0 104 183-311 69-183 (195)
137 2a5j_A RAS-related protein RAB 99.0 1.4E-09 4.7E-14 97.2 10.3 152 101-311 21-182 (191)
138 2gf0_A GTP-binding protein DI- 99.0 1.9E-09 6.5E-14 96.3 11.1 155 100-314 7-172 (199)
139 3sjy_A Translation initiation 99.0 1.4E-09 4.7E-14 109.6 11.3 113 184-313 75-192 (403)
140 1x3s_A RAS-related protein RAB 99.0 7.1E-10 2.4E-14 98.6 8.0 153 101-312 15-177 (195)
141 3t1o_A Gliding protein MGLA; G 99.0 6.9E-10 2.4E-14 98.6 7.9 105 183-311 73-190 (198)
142 2gf9_A RAS-related protein RAB 99.0 6.9E-10 2.3E-14 98.8 7.5 152 101-311 22-183 (189)
143 1wms_A RAB-9, RAB9, RAS-relate 99.0 1.4E-09 4.9E-14 95.1 9.3 153 101-311 7-172 (177)
144 2bcg_Y Protein YP2, GTP-bindin 99.0 8E-10 2.7E-14 99.8 7.7 152 101-311 8-169 (206)
145 3fkq_A NTRC-like two-domain pr 99.0 1.1E-08 3.8E-13 101.9 16.7 122 96-225 138-293 (373)
146 3qq5_A Small GTP-binding prote 99.0 3.5E-10 1.2E-14 114.7 5.9 160 100-313 33-196 (423)
147 1zbd_A Rabphilin-3A; G protein 99.0 8.5E-10 2.9E-14 99.3 7.6 152 101-311 8-169 (203)
148 3dpu_A RAB family protein; roc 99.0 2.1E-09 7.2E-14 112.2 11.6 122 100-255 40-165 (535)
149 2x77_A ADP-ribosylation factor 99.0 1.1E-09 3.6E-14 97.5 8.0 156 100-312 21-183 (189)
150 2bov_A RAla, RAS-related prote 99.0 1.3E-09 4.6E-14 97.8 8.7 151 101-311 14-175 (206)
151 4a9a_A Ribosome-interacting GT 99.0 3.2E-09 1.1E-13 106.0 12.2 119 98-252 69-194 (376)
152 2ged_A SR-beta, signal recogni 99.0 3.4E-09 1.2E-13 94.3 11.2 132 77-255 27-171 (193)
153 1z08_A RAS-related protein RAB 99.0 9E-10 3.1E-14 95.6 7.1 152 101-311 6-167 (170)
154 2c78_A Elongation factor TU-A; 99.0 2.3E-09 7.9E-14 108.0 11.0 126 101-254 11-142 (405)
155 2bme_A RAB4A, RAS-related prot 99.0 1.5E-09 5E-14 95.9 8.4 152 101-311 10-171 (186)
156 4gzl_A RAS-related C3 botulinu 98.9 3.3E-10 1.1E-14 102.7 4.1 169 100-311 29-203 (204)
157 2hup_A RAS-related protein RAB 98.9 2E-09 6.8E-14 97.3 9.2 153 101-311 29-191 (201)
158 1h65_A Chloroplast outer envel 98.9 2.2E-09 7.5E-14 102.0 9.8 120 101-255 39-169 (270)
159 2fn4_A P23, RAS-related protei 98.9 1.9E-09 6.4E-14 94.4 8.7 151 101-311 9-170 (181)
160 1vg8_A RAS-related protein RAB 98.9 5.4E-10 1.8E-14 100.6 5.3 156 101-311 8-173 (207)
161 2xex_A Elongation factor G; GT 98.9 1.1E-08 3.8E-13 109.9 16.3 132 100-255 9-142 (693)
162 1ihu_A Arsenical pump-driving 98.9 6.1E-09 2.1E-13 109.9 14.0 48 100-148 7-54 (589)
163 1z06_A RAS-related protein RAB 98.9 2.2E-09 7.5E-14 95.5 9.0 154 100-311 19-186 (189)
164 3j2k_7 ERF3, eukaryotic polype 98.9 4.6E-09 1.6E-13 107.1 12.2 66 182-253 93-168 (439)
165 2j1l_A RHO-related GTP-binding 98.9 8.7E-10 3E-14 100.7 6.1 169 100-311 33-207 (214)
166 3lvq_E ARF-GAP with SH3 domain 98.9 6.6E-09 2.3E-13 107.2 13.4 157 101-314 322-485 (497)
167 2o52_A RAS-related protein RAB 98.9 1.6E-09 5.4E-14 97.8 7.7 152 101-311 25-186 (200)
168 3dz8_A RAS-related protein RAB 98.9 6.2E-10 2.1E-14 99.4 4.8 152 101-311 23-184 (191)
169 2fh5_B SR-beta, signal recogni 98.9 4.7E-09 1.6E-13 95.2 10.6 114 101-255 7-130 (214)
170 2atv_A RERG, RAS-like estrogen 98.9 4E-09 1.4E-13 94.5 9.9 151 100-311 27-189 (196)
171 2f7s_A C25KG, RAS-related prot 98.9 5.9E-09 2E-13 94.8 11.2 104 183-311 83-197 (217)
172 2yc2_C IFT27, small RAB-relate 98.9 8.5E-10 2.9E-14 99.1 5.5 152 101-311 20-190 (208)
173 2fv8_A H6, RHO-related GTP-bin 98.9 1.1E-09 3.8E-14 99.3 6.2 167 101-311 25-198 (207)
174 3t34_A Dynamin-related protein 98.9 1E-08 3.5E-13 101.6 13.6 81 183-263 135-226 (360)
175 4djt_A GTP-binding nuclear pro 98.9 7.7E-10 2.6E-14 100.8 4.9 158 100-312 10-174 (218)
176 2ew1_A RAS-related protein RAB 98.9 4.1E-09 1.4E-13 95.7 9.7 152 101-311 26-187 (201)
177 3t5d_A Septin-7; GTP-binding p 98.9 4E-09 1.4E-13 100.5 10.0 168 99-312 6-203 (274)
178 2fu5_C RAS-related protein RAB 98.9 4.2E-09 1.5E-13 92.8 9.5 152 101-311 8-169 (183)
179 1lnz_A SPO0B-associated GTP-bi 98.9 1.9E-09 6.6E-14 106.4 8.0 157 103-314 160-331 (342)
180 3ez9_A Para; DNA binding, wing 98.9 3.8E-09 1.3E-13 106.2 10.3 43 99-141 109-158 (403)
181 3o47_A ADP-ribosylation factor 98.9 4.4E-09 1.5E-13 103.1 10.2 154 101-312 165-326 (329)
182 1wb1_A Translation elongation 98.9 5.8E-09 2E-13 107.6 11.5 162 101-311 19-187 (482)
183 3lxx_A GTPase IMAP family memb 98.9 4.6E-09 1.6E-13 97.7 9.8 121 100-254 28-159 (239)
184 3ez2_A Plasmid partition prote 98.9 6.9E-09 2.4E-13 104.1 11.8 44 98-141 105-155 (398)
185 1mh1_A RAC1; GTP-binding, GTPa 98.9 1.1E-09 3.6E-14 96.6 5.2 122 183-313 52-180 (186)
186 3kkq_A RAS-related protein M-R 98.9 2.8E-09 9.6E-14 94.0 7.9 152 100-311 17-180 (183)
187 1pui_A ENGB, probable GTP-bind 98.9 8.6E-09 3E-13 93.1 11.3 163 100-313 25-199 (210)
188 3cpj_B GTP-binding protein YPT 98.9 2.1E-09 7.1E-14 98.7 7.2 153 101-312 13-175 (223)
189 3p26_A Elongation factor 1 alp 98.9 2.9E-09 1E-13 109.8 9.1 67 182-254 109-185 (483)
190 2ywe_A GTP-binding protein LEP 98.9 9.1E-09 3.1E-13 108.5 12.9 108 183-313 72-184 (600)
191 3io3_A DEHA2D07832P; chaperone 98.9 9E-09 3.1E-13 101.8 11.9 40 101-140 18-59 (348)
192 3oes_A GTPase rhebl1; small GT 98.9 5.1E-10 1.7E-14 100.9 2.2 152 100-311 23-185 (201)
193 3izy_P Translation initiation 98.9 1.7E-09 5.8E-14 112.7 6.2 161 100-311 3-166 (537)
194 3bwd_D RAC-like GTP-binding pr 98.9 3.3E-09 1.1E-13 93.1 7.0 166 101-311 8-179 (182)
195 2gco_A H9, RHO-related GTP-bin 98.9 2.9E-09 9.8E-14 96.1 6.7 166 101-310 25-197 (201)
196 3gj0_A GTP-binding nuclear pro 98.9 1.5E-09 5.1E-14 99.3 4.9 153 100-311 14-173 (221)
197 2iwr_A Centaurin gamma 1; ANK 98.9 6.5E-09 2.2E-13 91.2 8.8 146 101-311 7-167 (178)
198 3ihw_A Centg3; RAS, centaurin, 98.8 2.1E-08 7.3E-13 89.3 12.2 147 100-311 19-178 (184)
199 3l0i_B RAS-related protein RAB 98.8 2.4E-10 8.2E-15 102.9 -0.7 154 100-312 32-195 (199)
200 3def_A T7I23.11 protein; chlor 98.8 8.3E-09 2.8E-13 97.6 9.9 118 101-253 36-164 (262)
201 1dar_A EF-G, elongation factor 98.8 3.2E-08 1.1E-12 106.3 15.5 132 100-255 11-144 (691)
202 3vqt_A RF-3, peptide chain rel 98.8 1.2E-08 4E-13 106.8 11.9 124 101-254 31-166 (548)
203 2elf_A Protein translation elo 98.8 1E-08 3.4E-13 102.3 10.9 153 94-311 14-178 (370)
204 2rdo_7 EF-G, elongation factor 98.8 2.9E-08 9.8E-13 106.9 14.8 66 183-254 81-148 (704)
205 1kk1_A EIF2gamma; initiation o 98.8 2.2E-08 7.5E-13 101.0 13.1 111 184-313 83-200 (410)
206 1s0u_A EIF-2-gamma, translatio 98.8 5E-08 1.7E-12 98.3 15.7 111 184-313 81-198 (408)
207 2q3h_A RAS homolog gene family 98.8 5.9E-09 2E-13 93.5 7.9 169 100-311 19-193 (201)
208 1zun_B Sulfate adenylate trans 98.8 1.9E-08 6.3E-13 102.3 12.3 67 182-254 102-171 (434)
209 3cb4_D GTP-binding protein LEP 98.8 1.7E-08 6E-13 106.5 12.3 108 183-313 70-182 (599)
210 3cbq_A GTP-binding protein REM 98.8 7.2E-09 2.5E-13 93.3 8.1 153 101-311 23-186 (195)
211 3reg_A RHO-like small GTPase; 98.8 4.7E-09 1.6E-13 93.7 6.8 152 101-311 23-186 (194)
212 3t5g_A GTP-binding protein RHE 98.8 1.2E-09 4.1E-14 96.2 2.7 151 101-311 6-167 (181)
213 3mca_A HBS1, elongation factor 98.8 9.2E-10 3.1E-14 116.3 1.8 68 181-254 252-329 (592)
214 3th5_A RAS-related C3 botulinu 98.3 5.6E-10 1.9E-14 100.8 0.0 168 100-310 29-202 (204)
215 2atx_A Small GTP binding prote 98.8 4.3E-09 1.5E-13 93.9 5.3 166 101-310 18-190 (194)
216 1d2e_A Elongation factor TU (E 98.8 6.6E-08 2.3E-12 97.1 14.0 126 102-254 4-133 (397)
217 1g7s_A Translation initiation 98.7 4.9E-08 1.7E-12 103.0 12.9 115 184-311 70-216 (594)
218 3j25_A Tetracycline resistance 98.7 3.1E-08 1.1E-12 105.5 11.0 184 103-313 4-239 (638)
219 1f60_A Elongation factor EEF1A 98.7 6.9E-08 2.4E-12 98.9 13.3 95 182-282 83-202 (458)
220 2j0v_A RAC-like GTP-binding pr 98.7 1E-08 3.5E-13 92.8 6.0 165 101-312 9-179 (212)
221 3c5c_A RAS-like protein 12; GD 98.7 8.7E-09 3E-13 91.9 5.2 151 100-311 20-184 (187)
222 1nrj_B SR-beta, signal recogni 98.7 5.6E-08 1.9E-12 88.3 10.7 114 100-255 11-135 (218)
223 3igf_A ALL4481 protein; two-do 98.7 1.1E-07 3.6E-12 94.9 13.4 36 102-137 3-38 (374)
224 2dy1_A Elongation factor G; tr 98.7 1E-07 3.5E-12 102.0 14.0 127 100-253 8-139 (665)
225 2qpt_A EH domain-containing pr 98.7 2.6E-08 8.9E-13 104.3 9.2 69 185-255 155-233 (550)
226 1zo1_I IF2, translation initia 98.7 1.8E-08 6.2E-13 104.0 7.4 159 100-310 3-164 (501)
227 2g3y_A GTP-binding protein GEM 98.7 1.1E-07 3.7E-12 87.2 11.8 154 101-311 37-201 (211)
228 1jny_A EF-1-alpha, elongation 98.7 8.4E-08 2.9E-12 97.5 12.1 68 181-254 81-158 (435)
229 1wxq_A GTP-binding protein; st 98.7 2.3E-08 8E-13 100.5 7.8 20 103-122 2-21 (397)
230 3llu_A RAS-related GTP-binding 98.7 5.4E-08 1.8E-12 87.2 9.3 114 183-310 68-194 (196)
231 4dkx_A RAS-related protein RAB 98.7 1.4E-07 4.7E-12 86.9 12.3 152 102-312 14-175 (216)
232 1m7b_A RND3/RHOE small GTP-bin 98.7 2.2E-08 7.4E-13 88.7 6.4 167 101-310 7-180 (184)
233 2zej_A Dardarin, leucine-rich 98.6 4.7E-08 1.6E-12 86.7 7.6 165 102-312 3-177 (184)
234 3avx_A Elongation factor TS, e 98.6 1.2E-07 4.2E-12 105.5 12.4 174 100-313 295-486 (1289)
235 3of5_A Dethiobiotin synthetase 98.6 1.7E-06 5.8E-11 80.3 18.1 168 101-272 4-203 (228)
236 3q3j_B RHO-related GTP-binding 98.6 3.2E-08 1.1E-12 90.4 5.4 169 101-311 27-201 (214)
237 1gwn_A RHO-related GTP-binding 98.6 4.9E-08 1.7E-12 88.7 6.2 167 101-310 28-201 (205)
238 2wkq_A NPH1-1, RAS-related C3 98.6 1.8E-08 6.1E-13 97.4 3.5 168 101-311 155-328 (332)
239 1ihu_A Arsenical pump-driving 98.5 1.4E-07 4.8E-12 99.4 9.2 40 102-141 328-367 (589)
240 2r8r_A Sensor protein; KDPD, P 98.5 1.7E-07 5.9E-12 86.8 8.3 86 102-195 7-96 (228)
241 1dul_A Signal recognition part 98.5 1.8E-08 6.2E-13 75.4 1.4 28 367-394 6-33 (69)
242 3r7w_A Gtpase1, GTP-binding pr 98.5 2.8E-07 9.7E-12 89.2 9.7 118 102-254 4-129 (307)
243 1r5b_A Eukaryotic peptide chai 98.5 1.4E-07 4.8E-12 96.8 7.8 67 182-254 119-195 (467)
244 2cjw_A GTP-binding protein GEM 98.5 1.6E-07 5.6E-12 84.1 6.8 157 101-311 6-170 (192)
245 2f9l_A RAB11B, member RAS onco 98.5 3E-07 1E-11 82.5 7.9 151 102-311 6-166 (199)
246 1udx_A The GTP-binding protein 98.5 1.8E-07 6.2E-12 94.5 7.0 155 102-312 158-324 (416)
247 3fgn_A Dethiobiotin synthetase 98.5 4.7E-06 1.6E-10 78.5 16.1 166 100-272 25-219 (251)
248 1jal_A YCHF protein; nucleotid 98.4 1.2E-06 4.2E-11 86.8 12.5 70 241-311 200-277 (363)
249 4fn5_A EF-G 1, elongation fact 98.3 5.4E-06 1.8E-10 89.3 15.1 128 101-253 13-150 (709)
250 1oix_A RAS-related protein RAB 98.3 8.9E-07 3.1E-11 79.1 7.1 151 101-310 29-189 (191)
251 3h2y_A GTPase family protein; 98.3 4.1E-07 1.4E-11 90.5 4.4 122 102-255 161-288 (368)
252 3qxc_A Dethiobiotin synthetase 98.2 5.7E-05 1.9E-09 70.7 18.1 148 101-254 21-203 (242)
253 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 3E-06 1E-10 79.9 9.1 41 101-141 4-44 (260)
254 3ec1_A YQEH GTPase; atnos1, at 98.2 1.8E-07 6.1E-12 93.2 0.6 137 103-272 164-309 (369)
255 2qag_A Septin-2, protein NEDD5 98.2 6E-06 2E-10 81.8 11.4 21 102-122 38-58 (361)
256 2dby_A GTP-binding protein; GD 98.2 3.7E-06 1.3E-10 83.6 9.8 70 241-311 202-282 (368)
257 1n0u_A EF-2, elongation factor 98.2 1.1E-06 3.7E-11 96.4 6.1 65 183-253 97-163 (842)
258 2i3b_A HCR-ntpase, human cance 98.2 2E-07 6.9E-12 84.1 -0.5 27 103-129 3-29 (189)
259 2cvh_A DNA repair and recombin 98.1 2.4E-05 8.4E-10 70.6 12.6 35 102-139 21-55 (220)
260 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.9E-05 9.8E-10 70.5 12.9 39 102-140 24-62 (235)
261 3c5h_A Glucocorticoid receptor 98.1 1.7E-05 5.6E-10 74.5 11.3 83 213-311 162-253 (255)
262 3ec2_A DNA replication protein 98.1 6.5E-06 2.2E-10 72.6 7.6 37 101-137 38-75 (180)
263 1tq4_A IIGP1, interferon-induc 98.1 1.9E-05 6.7E-10 79.5 11.9 173 101-316 69-256 (413)
264 2qag_B Septin-6, protein NEDD5 98.1 7.3E-06 2.5E-10 82.8 8.3 59 216-275 151-217 (427)
265 1puj_A YLQF, conserved hypothe 98.1 5.5E-06 1.9E-10 79.3 7.0 32 100-137 119-150 (282)
266 1nij_A Hypothetical protein YJ 98.0 9.2E-05 3.2E-09 71.8 15.0 172 101-277 4-189 (318)
267 2qnr_A Septin-2, protein NEDD5 98.0 3.1E-05 1.1E-09 74.7 11.5 22 101-122 18-39 (301)
268 2dr3_A UPF0273 protein PH0284; 98.0 3.8E-05 1.3E-09 70.5 11.5 39 102-140 24-62 (247)
269 2ohf_A Protein OLA1, GTP-bindi 98.0 9.3E-06 3.2E-10 81.3 7.8 22 101-122 22-43 (396)
270 3bgw_A DNAB-like replicative h 98.0 0.00021 7E-09 72.7 17.7 117 101-224 197-319 (444)
271 1xjc_A MOBB protein homolog; s 98.0 7.4E-06 2.5E-10 72.5 5.6 40 101-140 4-43 (169)
272 1xp8_A RECA protein, recombina 97.9 7.5E-05 2.6E-09 74.1 13.1 89 101-196 74-165 (366)
273 2r6a_A DNAB helicase, replicat 97.9 0.0016 5.5E-08 66.2 23.3 39 101-139 203-242 (454)
274 3sop_A Neuronal-specific septi 97.9 1.9E-05 6.5E-10 75.1 7.8 25 102-126 3-27 (270)
275 1cr0_A DNA primase/helicase; R 97.9 0.00015 5E-09 69.2 13.9 38 102-139 36-74 (296)
276 1u94_A RECA protein, recombina 97.9 5.4E-05 1.9E-09 74.8 10.4 89 101-196 63-154 (356)
277 2qag_C Septin-7; cell cycle, c 97.9 0.00017 5.9E-09 72.7 14.1 24 99-122 29-52 (418)
278 4a1f_A DNAB helicase, replicat 97.9 0.00017 5.8E-09 70.7 13.7 115 102-223 47-164 (338)
279 1gvn_B Zeta; postsegregational 97.9 2.1E-05 7.3E-10 75.3 7.1 65 68-141 6-70 (287)
280 3hr8_A Protein RECA; alpha and 97.8 0.00014 4.6E-09 71.9 12.9 88 101-196 61-152 (356)
281 2p5t_B PEZT; postsegregational 97.8 0.00017 5.8E-09 67.4 12.9 42 99-143 30-71 (253)
282 3bh0_A DNAB-like replicative h 97.8 0.00017 5.8E-09 69.9 13.3 116 102-224 69-190 (315)
283 2zr9_A Protein RECA, recombina 97.8 8.6E-05 3E-09 73.1 11.1 89 101-196 61-152 (349)
284 3szr_A Interferon-induced GTP- 97.8 3.2E-05 1.1E-09 81.8 8.4 74 183-256 146-230 (608)
285 2b8t_A Thymidine kinase; deoxy 97.8 6.2E-05 2.1E-09 69.5 9.2 101 100-210 11-114 (223)
286 1f5n_A Interferon-induced guan 97.8 2.1E-05 7E-10 82.7 6.1 29 100-134 37-65 (592)
287 2q6t_A DNAB replication FORK h 97.8 0.0021 7E-08 65.2 20.6 115 101-223 200-318 (444)
288 1xx6_A Thymidine kinase; NESG, 97.7 0.00012 4.2E-09 65.9 9.8 97 101-210 8-106 (191)
289 3c8u_A Fructokinase; YP_612366 97.7 7.2E-05 2.5E-09 67.7 7.9 42 100-141 21-62 (208)
290 2ehv_A Hypothetical protein PH 97.7 0.00013 4.3E-09 67.2 9.6 39 101-139 30-69 (251)
291 2yvu_A Probable adenylyl-sulfa 97.7 2.7E-05 9.1E-10 69.0 4.8 42 100-141 12-53 (186)
292 2axn_A 6-phosphofructo-2-kinas 97.7 0.00016 5.6E-09 74.9 11.4 44 99-142 33-76 (520)
293 3lda_A DNA repair protein RAD5 97.7 0.00048 1.6E-08 69.1 14.2 41 102-142 179-226 (400)
294 2kjq_A DNAA-related protein; s 97.7 0.00013 4.5E-09 62.8 8.6 36 102-137 37-72 (149)
295 1rz3_A Hypothetical protein rb 97.7 9.5E-05 3.2E-09 66.6 7.9 42 100-141 21-62 (201)
296 1ni3_A YCHF GTPase, YCHF GTP-b 97.6 2.2E-05 7.5E-10 78.6 2.9 31 100-136 19-49 (392)
297 3t61_A Gluconokinase; PSI-biol 97.6 0.00057 2E-08 61.1 11.9 38 100-142 17-54 (202)
298 4a74_A DNA repair and recombin 97.6 0.00019 6.4E-09 65.1 8.7 26 101-126 25-50 (231)
299 2z43_A DNA repair and recombin 97.6 0.00013 4.4E-09 70.9 8.1 43 101-143 107-156 (324)
300 3cnl_A YLQF, putative uncharac 97.6 4.8E-05 1.7E-09 71.9 4.9 28 102-135 100-127 (262)
301 1np6_A Molybdopterin-guanine d 97.6 6.4E-05 2.2E-09 66.7 5.4 40 101-140 6-45 (174)
302 1n0w_A DNA repair protein RAD5 97.6 0.00013 4.3E-09 66.9 7.6 39 101-139 24-68 (243)
303 1v5w_A DMC1, meiotic recombina 97.5 0.00034 1.2E-08 68.6 10.4 92 101-195 122-231 (343)
304 3e1s_A Exodeoxyribonuclease V, 97.5 0.00024 8.4E-09 74.5 9.5 112 101-224 204-316 (574)
305 1odf_A YGR205W, hypothetical 3 97.5 0.00019 6.4E-09 68.9 7.8 43 99-141 29-74 (290)
306 2i1q_A DNA repair and recombin 97.5 0.0004 1.4E-08 67.2 10.2 42 101-142 98-156 (322)
307 1nlf_A Regulatory protein REPA 97.5 0.00094 3.2E-08 63.1 12.5 38 101-138 30-77 (279)
308 1nks_A Adenylate kinase; therm 97.5 7.8E-05 2.7E-09 65.7 4.5 36 102-137 2-37 (194)
309 3bos_A Putative DNA replicatio 97.5 0.00012 4E-09 66.6 5.8 38 102-139 53-90 (242)
310 1kht_A Adenylate kinase; phosp 97.4 9.8E-05 3.3E-09 65.0 4.7 38 101-138 3-40 (192)
311 3tqc_A Pantothenate kinase; bi 97.4 0.00021 7.1E-09 69.6 7.3 44 98-141 89-134 (321)
312 4eaq_A DTMP kinase, thymidylat 97.4 0.0022 7.6E-08 59.0 13.8 35 100-135 25-59 (229)
313 4eun_A Thermoresistant glucoki 97.4 0.0012 3.9E-08 59.2 11.4 38 100-142 28-65 (200)
314 3uie_A Adenylyl-sulfate kinase 97.4 0.00011 3.9E-09 65.9 4.6 42 100-141 24-65 (200)
315 3io5_A Recombination and repai 97.4 0.00054 1.9E-08 66.5 9.4 86 103-195 30-123 (333)
316 2qt1_A Nicotinamide riboside k 97.4 0.00016 5.3E-09 65.1 5.3 42 93-140 13-56 (207)
317 1l8q_A Chromosomal replication 97.4 0.00015 5.2E-09 69.9 5.2 38 102-139 38-75 (324)
318 3zvl_A Bifunctional polynucleo 97.3 0.0013 4.6E-08 66.0 12.3 38 99-141 256-293 (416)
319 2zts_A Putative uncharacterize 97.3 0.0025 8.5E-08 58.2 13.2 39 101-139 30-69 (251)
320 1q57_A DNA primase/helicase; d 97.3 0.0015 5.3E-08 67.1 12.9 39 101-139 242-281 (503)
321 3v9p_A DTMP kinase, thymidylat 97.3 0.00086 3E-08 62.0 9.9 36 100-135 24-63 (227)
322 3syl_A Protein CBBX; photosynt 97.3 0.0087 3E-07 56.7 17.2 30 101-130 67-96 (309)
323 1a7j_A Phosphoribulokinase; tr 97.3 0.0001 3.4E-09 70.7 3.3 42 100-141 4-45 (290)
324 1m7g_A Adenylylsulfate kinase; 97.3 0.00015 5.2E-09 65.6 4.2 41 101-141 25-66 (211)
325 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.0014 4.7E-08 63.8 11.0 33 102-137 124-156 (331)
326 2pez_A Bifunctional 3'-phospho 97.3 0.00019 6.5E-09 63.0 4.5 41 101-141 5-45 (179)
327 3t15_A Ribulose bisphosphate c 97.3 0.00087 3E-08 64.1 9.4 35 100-137 35-69 (293)
328 1ly1_A Polynucleotide kinase; 97.3 9.7E-05 3.3E-09 64.4 2.4 37 101-141 2-38 (181)
329 3jvv_A Twitching mobility prot 97.3 0.0014 4.9E-08 64.5 11.0 83 101-193 123-206 (356)
330 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0056 1.9E-07 56.4 14.4 72 101-195 39-110 (262)
331 1uj2_A Uridine-cytidine kinase 97.2 0.00019 6.5E-09 66.9 4.3 43 99-141 20-67 (252)
332 3asz_A Uridine kinase; cytidin 97.2 0.00025 8.4E-09 63.9 4.7 38 100-140 5-42 (211)
333 4gp7_A Metallophosphoesterase; 97.2 0.0051 1.7E-07 53.7 13.0 23 100-122 8-30 (171)
334 1fnn_A CDC6P, cell division co 97.2 0.0042 1.4E-07 60.6 13.7 113 73-195 23-137 (389)
335 2qby_B CDC6 homolog 3, cell di 97.2 0.002 6.9E-08 62.9 11.1 56 73-137 26-89 (384)
336 1nn5_A Similar to deoxythymidy 97.2 0.00038 1.3E-08 62.5 5.4 36 100-135 8-43 (215)
337 3llm_A ATP-dependent RNA helic 97.1 0.0036 1.2E-07 57.4 12.0 131 102-237 77-228 (235)
338 3lv8_A DTMP kinase, thymidylat 97.1 0.00069 2.4E-08 63.0 7.1 40 100-139 26-65 (236)
339 2chg_A Replication factor C sm 97.1 0.0033 1.1E-07 55.6 11.4 34 104-137 41-74 (226)
340 4a0g_A Adenosylmethionine-8-am 97.1 0.0041 1.4E-07 68.0 13.8 36 101-136 34-75 (831)
341 2f1r_A Molybdopterin-guanine d 97.1 0.00024 8.4E-09 62.7 3.3 38 102-139 3-40 (171)
342 2z0h_A DTMP kinase, thymidylat 97.1 0.00045 1.5E-08 61.1 5.1 34 103-136 2-35 (197)
343 2v1u_A Cell division control p 97.1 0.0049 1.7E-07 59.9 13.0 38 101-138 44-87 (387)
344 3q5d_A Atlastin-1; G protein, 97.1 0.00061 2.1E-08 69.2 6.3 28 99-126 65-92 (447)
345 3r7w_B Gtpase2, GTP-binding pr 97.1 0.0018 6.3E-08 63.0 9.4 70 183-255 45-121 (331)
346 1sq5_A Pantothenate kinase; P- 97.1 0.00047 1.6E-08 66.5 5.1 43 99-141 78-122 (308)
347 3aez_A Pantothenate kinase; tr 97.1 0.00061 2.1E-08 66.0 5.9 43 99-141 88-132 (312)
348 2wwf_A Thymidilate kinase, put 97.0 0.00054 1.8E-08 61.4 5.2 35 100-134 9-43 (212)
349 2qby_A CDC6 homolog 1, cell di 97.0 0.0018 6.2E-08 62.9 9.3 91 101-194 45-139 (386)
350 1gtv_A TMK, thymidylate kinase 97.0 0.00014 4.7E-09 65.4 1.1 36 103-138 2-37 (214)
351 1pzn_A RAD51, DNA repair and r 97.0 0.0013 4.6E-08 64.5 8.2 37 101-137 131-173 (349)
352 2plr_A DTMP kinase, probable t 97.0 0.0005 1.7E-08 61.4 4.8 31 101-132 4-34 (213)
353 2w58_A DNAI, primosome compone 97.0 0.00051 1.7E-08 61.3 4.8 36 102-137 55-90 (202)
354 2pbr_A DTMP kinase, thymidylat 97.0 0.00058 2E-08 60.1 5.1 31 103-133 2-32 (195)
355 1tf7_A KAIC; homohexamer, hexa 97.0 0.0034 1.1E-07 65.0 11.6 37 101-137 281-317 (525)
356 2ewv_A Twitching motility prot 97.0 0.00055 1.9E-08 67.9 5.2 83 100-193 135-219 (372)
357 3vkw_A Replicase large subunit 97.0 0.0041 1.4E-07 62.9 11.6 125 79-224 143-270 (446)
358 1knq_A Gluconate kinase; ALFA/ 97.0 0.00083 2.8E-08 58.4 5.6 38 100-142 7-44 (175)
359 2obn_A Hypothetical protein; s 97.0 0.011 3.9E-07 57.8 14.2 155 101-270 152-331 (349)
360 3cmu_A Protein RECA, recombina 97.0 0.0028 9.5E-08 74.6 11.3 90 100-196 1426-1519(2050)
361 3umf_A Adenylate kinase; rossm 97.0 0.00065 2.2E-08 62.4 4.9 27 99-125 27-53 (217)
362 3te6_A Regulatory protein SIR3 97.0 0.018 6.3E-07 55.7 15.4 42 77-127 30-71 (318)
363 1g5t_A COB(I)alamin adenosyltr 97.0 0.015 5.1E-07 52.4 13.7 37 103-139 30-66 (196)
364 4b4t_I 26S protease regulatory 97.0 0.013 4.6E-07 58.9 14.8 68 101-191 216-283 (437)
365 2rhm_A Putative kinase; P-loop 96.9 0.00056 1.9E-08 60.2 4.3 37 100-141 4-40 (193)
366 2orw_A Thymidine kinase; TMTK, 96.9 0.00069 2.3E-08 60.4 4.8 36 102-137 4-39 (184)
367 2v54_A DTMP kinase, thymidylat 96.9 0.00072 2.5E-08 60.1 5.0 34 101-136 4-37 (204)
368 4b4t_J 26S protease regulatory 96.9 0.023 8E-07 56.7 16.3 68 101-191 182-249 (405)
369 2j9r_A Thymidine kinase; TK1, 96.9 0.0034 1.2E-07 57.4 9.2 38 100-137 27-64 (214)
370 1jjv_A Dephospho-COA kinase; P 96.9 0.00057 2E-08 61.2 3.9 32 102-139 3-34 (206)
371 4hlc_A DTMP kinase, thymidylat 96.9 0.0043 1.5E-07 56.2 9.7 34 102-136 3-36 (205)
372 3kb2_A SPBC2 prophage-derived 96.9 0.00061 2.1E-08 58.7 3.8 35 102-141 2-36 (173)
373 3a00_A Guanylate kinase, GMP k 96.9 0.00048 1.6E-08 61.0 3.2 25 102-126 2-26 (186)
374 1tev_A UMP-CMP kinase; ploop, 96.9 0.00071 2.4E-08 59.5 4.3 33 101-138 3-35 (196)
375 3upu_A ATP-dependent DNA helic 96.8 0.0032 1.1E-07 64.0 9.4 35 103-137 47-82 (459)
376 3cmw_A Protein RECA, recombina 96.8 0.0039 1.3E-07 72.5 11.1 90 101-196 732-823 (1706)
377 3h4m_A Proteasome-activating n 96.8 0.0066 2.2E-07 56.9 10.9 34 101-137 51-84 (285)
378 2jeo_A Uridine-cytidine kinase 96.8 0.00091 3.1E-08 62.0 4.9 42 99-140 23-69 (245)
379 1kgd_A CASK, peripheral plasma 96.8 0.00059 2E-08 60.1 3.4 25 101-125 5-29 (180)
380 1uf9_A TT1252 protein; P-loop, 96.8 0.00059 2E-08 60.6 3.4 36 99-140 6-41 (203)
381 1ukz_A Uridylate kinase; trans 96.8 0.00084 2.9E-08 59.9 4.4 36 98-138 12-47 (203)
382 4edh_A DTMP kinase, thymidylat 96.8 0.0012 4E-08 60.3 5.4 36 101-136 6-41 (213)
383 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.0047 1.6E-07 59.7 9.9 72 101-194 45-116 (322)
384 1y63_A LMAJ004144AAA protein; 96.8 0.00051 1.7E-08 60.8 2.7 35 100-138 9-43 (184)
385 2c95_A Adenylate kinase 1; tra 96.8 0.00082 2.8E-08 59.3 4.1 33 101-138 9-41 (196)
386 1qhx_A CPT, protein (chloramph 96.8 0.00065 2.2E-08 59.2 3.4 37 101-140 3-39 (178)
387 1zp6_A Hypothetical protein AT 96.8 0.00076 2.6E-08 59.4 3.8 22 101-122 9-30 (191)
388 3ld9_A DTMP kinase, thymidylat 96.8 0.002 6.9E-08 59.3 6.8 42 99-140 19-61 (223)
389 3vaa_A Shikimate kinase, SK; s 96.8 0.00088 3E-08 59.9 4.2 35 100-139 24-58 (199)
390 4b3f_X DNA-binding protein smu 96.8 0.0022 7.6E-08 68.0 7.9 46 103-151 207-252 (646)
391 2z4s_A Chromosomal replication 96.8 0.003 1E-07 64.0 8.4 37 102-138 131-169 (440)
392 1w36_D RECD, exodeoxyribonucle 96.8 0.0035 1.2E-07 66.1 9.3 36 102-137 165-204 (608)
393 4b4t_K 26S protease regulatory 96.8 0.0035 1.2E-07 63.3 8.8 68 101-191 206-273 (428)
394 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.6E-08 59.3 4.4 35 99-138 18-52 (201)
395 1aky_A Adenylate kinase; ATP:A 96.7 0.00096 3.3E-08 60.5 4.2 34 100-138 3-36 (220)
396 3cm0_A Adenylate kinase; ATP-b 96.7 0.00091 3.1E-08 58.6 3.9 33 101-138 4-36 (186)
397 2bbw_A Adenylate kinase 4, AK4 96.7 0.00098 3.4E-08 61.7 4.2 25 101-125 27-51 (246)
398 2qor_A Guanylate kinase; phosp 96.7 0.0007 2.4E-08 60.8 3.0 26 100-125 11-36 (204)
399 1kag_A SKI, shikimate kinase I 96.7 0.00075 2.6E-08 58.5 3.1 33 102-139 5-37 (173)
400 1lvg_A Guanylate kinase, GMP k 96.7 0.00085 2.9E-08 60.2 3.5 25 102-126 5-29 (198)
401 4tmk_A Protein (thymidylate ki 96.7 0.0029 1E-07 57.7 7.1 39 101-139 3-41 (213)
402 2eyu_A Twitching motility prot 96.7 0.0016 5.5E-08 61.3 5.5 38 101-138 25-63 (261)
403 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 58.1 4.0 35 101-140 5-39 (185)
404 1qf9_A UMP/CMP kinase, protein 96.7 0.0014 4.7E-08 57.5 4.6 34 100-138 5-38 (194)
405 3tau_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 59.9 4.0 25 100-124 7-31 (208)
406 3tr0_A Guanylate kinase, GMP k 96.7 0.001 3.6E-08 59.1 3.8 25 101-125 7-31 (205)
407 4fcw_A Chaperone protein CLPB; 96.7 0.0014 4.8E-08 62.3 4.9 41 101-141 47-87 (311)
408 2if2_A Dephospho-COA kinase; a 96.7 0.00078 2.7E-08 60.2 2.9 32 102-139 2-33 (204)
409 3lw7_A Adenylate kinase relate 96.7 0.00099 3.4E-08 57.1 3.5 20 102-121 2-21 (179)
410 1jbk_A CLPB protein; beta barr 96.7 0.0016 5.5E-08 56.3 4.9 26 102-127 44-69 (195)
411 2bwj_A Adenylate kinase 5; pho 96.7 0.0011 3.8E-08 58.6 3.8 34 101-139 12-45 (199)
412 4b4t_M 26S protease regulatory 96.6 0.0021 7.4E-08 64.9 6.3 69 100-191 214-282 (434)
413 3exa_A TRNA delta(2)-isopenten 96.6 0.0021 7.3E-08 62.2 6.0 34 101-139 3-36 (322)
414 3b9p_A CG5977-PA, isoform A; A 96.6 0.0046 1.6E-07 58.5 8.2 71 101-194 54-124 (297)
415 1vht_A Dephospho-COA kinase; s 96.6 0.0011 3.8E-08 59.9 3.8 33 101-139 4-36 (218)
416 3cmu_A Protein RECA, recombina 96.6 0.0068 2.3E-07 71.4 11.1 88 101-195 383-473 (2050)
417 1x6v_B Bifunctional 3'-phospho 96.6 0.0014 4.9E-08 69.1 5.0 42 100-141 51-92 (630)
418 2ze6_A Isopentenyl transferase 96.6 0.0017 5.8E-08 60.7 4.9 34 102-140 2-35 (253)
419 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0047 1.6E-07 56.5 7.6 111 100-224 27-139 (219)
420 1zak_A Adenylate kinase; ATP:A 96.6 0.0012 4E-08 60.0 3.6 26 100-125 4-29 (222)
421 1ye8_A Protein THEP1, hypothet 96.6 0.0013 4.6E-08 58.2 3.9 24 103-126 2-25 (178)
422 1sxj_C Activator 1 40 kDa subu 96.6 0.0052 1.8E-07 59.6 8.4 26 104-129 49-74 (340)
423 1njg_A DNA polymerase III subu 96.6 0.016 5.6E-07 51.6 11.1 27 102-128 46-72 (250)
424 2qgz_A Helicase loader, putati 96.6 0.0021 7.2E-08 61.9 5.4 36 102-137 153-189 (308)
425 4b4t_H 26S protease regulatory 96.6 0.039 1.3E-06 56.0 14.8 69 100-191 242-310 (467)
426 2jaq_A Deoxyguanosine kinase; 96.5 0.0014 4.9E-08 58.0 3.9 24 103-126 2-25 (205)
427 1sxj_E Activator 1 40 kDa subu 96.5 0.011 3.8E-07 57.1 10.6 23 104-126 39-61 (354)
428 1cke_A CK, MSSA, protein (cyti 96.5 0.0015 5.1E-08 59.2 4.0 32 102-138 6-37 (227)
429 2j41_A Guanylate kinase; GMP, 96.5 0.0014 4.9E-08 58.3 3.8 25 101-125 6-30 (207)
430 3u61_B DNA polymerase accessor 96.5 0.014 4.8E-07 55.8 11.1 34 101-137 48-81 (324)
431 1lv7_A FTSH; alpha/beta domain 96.5 0.0089 3E-07 55.3 9.4 34 101-137 45-78 (257)
432 4b4t_L 26S protease subunit RP 96.5 0.0051 1.7E-07 62.2 8.2 69 100-191 214-282 (437)
433 3d3q_A TRNA delta(2)-isopenten 96.5 0.0016 5.4E-08 63.8 4.3 34 102-140 8-41 (340)
434 2f6r_A COA synthase, bifunctio 96.5 0.0011 3.8E-08 63.0 3.1 37 98-140 72-108 (281)
435 1d2n_A N-ethylmaleimide-sensit 96.5 0.0035 1.2E-07 58.7 6.5 34 100-136 63-96 (272)
436 3tlx_A Adenylate kinase 2; str 96.5 0.0019 6.5E-08 59.9 4.5 33 100-137 28-60 (243)
437 2vli_A Antibiotic resistance p 96.5 0.00089 3E-08 58.5 2.1 26 100-125 4-29 (183)
438 2iyv_A Shikimate kinase, SK; t 96.5 0.0014 4.9E-08 57.4 3.4 34 102-140 3-36 (184)
439 3foz_A TRNA delta(2)-isopenten 96.5 0.0028 9.5E-08 61.2 5.7 35 100-139 9-43 (316)
440 3iij_A Coilin-interacting nucl 96.5 0.0016 5.5E-08 56.9 3.7 25 101-125 11-35 (180)
441 1zd8_A GTP:AMP phosphotransfer 96.5 0.0013 4.6E-08 59.9 3.2 34 100-138 6-39 (227)
442 3ney_A 55 kDa erythrocyte memb 96.5 0.0016 5.6E-08 58.8 3.7 26 100-125 18-43 (197)
443 1m8p_A Sulfate adenylyltransfe 96.4 0.0017 5.8E-08 68.1 4.2 44 99-142 394-438 (573)
444 1z6g_A Guanylate kinase; struc 96.4 0.0014 4.7E-08 59.8 3.0 25 101-125 23-47 (218)
445 1e6c_A Shikimate kinase; phosp 96.4 0.0018 6.2E-08 55.9 3.6 34 102-140 3-36 (173)
446 3a8t_A Adenylate isopentenyltr 96.4 0.0028 9.7E-08 61.9 5.4 36 100-140 39-74 (339)
447 3sr0_A Adenylate kinase; phosp 96.4 0.002 6.8E-08 58.5 3.9 35 103-142 2-37 (206)
448 3eie_A Vacuolar protein sortin 96.4 0.0072 2.5E-07 58.2 8.1 71 101-194 51-121 (322)
449 1znw_A Guanylate kinase, GMP k 96.4 0.0018 6.1E-08 58.3 3.4 25 101-125 20-44 (207)
450 1via_A Shikimate kinase; struc 96.4 0.0019 6.5E-08 56.2 3.5 32 103-139 6-37 (175)
451 3cmw_A Protein RECA, recombina 96.4 0.0063 2.1E-07 70.8 8.6 89 101-195 1431-1521(1706)
452 2p65_A Hypothetical protein PF 96.4 0.0022 7.5E-08 55.4 3.8 26 102-127 44-69 (187)
453 3be4_A Adenylate kinase; malar 96.4 0.0018 6.1E-08 58.8 3.3 33 101-138 5-37 (217)
454 3crm_A TRNA delta(2)-isopenten 96.4 0.0033 1.1E-07 61.1 5.4 34 101-139 5-38 (323)
455 2grj_A Dephospho-COA kinase; T 96.3 0.0014 4.9E-08 58.8 2.6 36 100-140 11-46 (192)
456 2orv_A Thymidine kinase; TP4A 96.3 0.018 6.1E-07 53.2 10.0 84 100-196 18-103 (234)
457 2bdt_A BH3686; alpha-beta prot 96.3 0.0021 7E-08 56.7 3.5 22 102-123 3-24 (189)
458 3fb4_A Adenylate kinase; psych 96.3 0.0023 7.8E-08 57.6 3.9 30 103-137 2-31 (216)
459 1ltq_A Polynucleotide kinase; 96.3 0.0014 4.6E-08 62.4 2.4 38 101-142 2-39 (301)
460 3d8b_A Fidgetin-like protein 1 96.3 0.0071 2.4E-07 59.3 7.7 35 100-137 116-150 (357)
461 2gks_A Bifunctional SAT/APS ki 96.3 0.0021 7.2E-08 66.9 4.0 42 100-141 371-412 (546)
462 2pt5_A Shikimate kinase, SK; a 96.3 0.0026 9E-08 54.6 3.9 33 103-140 2-34 (168)
463 1ak2_A Adenylate kinase isoenz 96.3 0.0029 9.8E-08 58.0 4.4 34 100-138 15-48 (233)
464 1sxj_B Activator 1 37 kDa subu 96.3 0.011 3.7E-07 56.1 8.6 25 104-128 45-69 (323)
465 1bif_A 6-phosphofructo-2-kinas 96.3 0.0026 8.8E-08 64.9 4.2 41 100-140 38-78 (469)
466 1zuh_A Shikimate kinase; alpha 96.2 0.0029 9.8E-08 54.6 3.9 34 101-139 7-40 (168)
467 3nh6_A ATP-binding cassette SU 96.2 0.032 1.1E-06 53.7 11.6 26 100-125 79-104 (306)
468 3lnc_A Guanylate kinase, GMP k 96.2 0.0014 4.9E-08 59.8 1.9 26 100-125 26-52 (231)
469 2gk6_A Regulator of nonsense t 96.2 0.0075 2.6E-07 63.8 7.4 52 103-157 197-249 (624)
470 1c9k_A COBU, adenosylcobinamid 96.2 0.0034 1.2E-07 55.8 4.0 30 104-137 2-31 (180)
471 2qp9_X Vacuolar protein sortin 96.2 0.0069 2.4E-07 59.4 6.6 33 102-137 85-117 (355)
472 3dl0_A Adenylate kinase; phosp 96.2 0.0025 8.7E-08 57.4 3.2 31 103-138 2-32 (216)
473 3hjn_A DTMP kinase, thymidylat 96.1 0.0051 1.7E-07 55.3 5.1 47 103-150 2-48 (197)
474 1a5t_A Delta prime, HOLB; zinc 96.1 0.05 1.7E-06 52.6 12.5 27 101-127 24-50 (334)
475 1p9r_A General secretion pathw 96.1 0.004 1.4E-07 62.7 4.7 37 101-137 167-203 (418)
476 2ce7_A Cell division protein F 96.1 0.029 1E-06 57.3 11.2 69 102-193 50-118 (476)
477 3eph_A TRNA isopentenyltransfe 96.1 0.007 2.4E-07 60.5 6.4 84 101-189 2-97 (409)
478 1iqp_A RFCS; clamp loader, ext 96.1 0.012 4.3E-07 55.7 7.9 25 104-128 49-73 (327)
479 2xb4_A Adenylate kinase; ATP-b 96.1 0.0036 1.2E-07 57.1 3.9 23 103-125 2-24 (223)
480 3pxi_A Negative regulator of g 96.1 0.01 3.5E-07 64.1 8.1 36 102-137 522-557 (758)
481 1s96_A Guanylate kinase, GMP k 96.1 0.0036 1.2E-07 57.3 3.7 25 101-125 16-40 (219)
482 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.003 1E-07 61.5 3.3 80 102-194 172-251 (330)
483 1w5s_A Origin recognition comp 96.0 0.017 5.6E-07 56.8 8.7 38 101-138 50-95 (412)
484 1e4v_A Adenylate kinase; trans 96.0 0.0037 1.3E-07 56.3 3.7 23 103-125 2-24 (214)
485 2qmh_A HPR kinase/phosphorylas 96.0 0.0059 2E-07 55.2 4.9 33 101-139 34-66 (205)
486 4e22_A Cytidylate kinase; P-lo 96.0 0.0037 1.3E-07 58.2 3.7 24 101-124 27-50 (252)
487 1htw_A HI0065; nucleotide-bind 96.0 0.0045 1.5E-07 53.7 3.9 25 101-125 33-57 (158)
488 3r20_A Cytidylate kinase; stru 96.0 0.0045 1.5E-07 57.4 4.1 35 100-139 8-42 (233)
489 2wjy_A Regulator of nonsense t 96.0 0.0098 3.4E-07 64.7 7.2 53 103-158 373-426 (800)
490 1sxj_D Activator 1 41 kDa subu 95.9 0.025 8.5E-07 54.4 9.3 23 104-126 61-83 (353)
491 2v9p_A Replication protein E1; 95.9 0.0052 1.8E-07 59.2 4.3 25 101-125 126-150 (305)
492 3pxg_A Negative regulator of g 95.9 0.0084 2.9E-07 61.1 6.1 26 102-127 202-227 (468)
493 3ice_A Transcription terminati 95.9 0.028 9.6E-07 55.9 9.3 48 100-148 173-222 (422)
494 3vfd_A Spastin; ATPase, microt 95.8 0.03 1E-06 55.3 9.6 34 101-137 148-181 (389)
495 3n70_A Transport activator; si 95.8 0.0039 1.3E-07 52.8 2.6 33 104-137 27-59 (145)
496 3tif_A Uncharacterized ABC tra 95.8 0.0047 1.6E-07 57.1 3.3 23 101-123 31-53 (235)
497 3hws_A ATP-dependent CLP prote 95.8 0.034 1.2E-06 54.3 9.7 33 102-137 52-84 (363)
498 2zan_A Vacuolar protein sortin 95.8 0.008 2.7E-07 60.8 5.3 36 100-137 166-201 (444)
499 3ake_A Cytidylate kinase; CMP 95.7 0.0065 2.2E-07 53.9 3.9 33 103-140 4-36 (208)
500 1tue_A Replication protein E1; 95.7 0.0052 1.8E-07 55.9 3.2 24 102-125 59-82 (212)
No 1
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-82 Score=646.67 Aligned_cols=391 Identities=42% Similarity=0.726 Sum_probs=352.7
Q ss_pred CchhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHH
Q 015221 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (411)
Q Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (411)
|||++|+++|+++|++++|++++||+++++.+++|+.+|+++||+++++.+|++++++++.++++..+++|.++++++|+
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~ 80 (443)
T 3dm5_A 1 MVLDNLGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVY 80 (443)
T ss_dssp CCSTHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 81 ~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
++|.++|++..... ...++|.+|+++|++||||||++++||.+++++|++|+++++|+||+++++||+.++.+.++|++
T Consensus 81 ~eL~~~L~~~~~~~-~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 81 EELTKFLGTEAKPI-EIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp HHHHHHTTSSCCCC-CCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHhcCccccc-ccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 99999998743332 33346899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 161 ~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
......+|..++.+++..+..++||++||||||+.+.+..++.++..+.....||.+++|+|++.|+++.+++..|++.+
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~ 239 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT 239 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC
Confidence 88888899999999999998889999999999999999999999999998889999999999999999999999999888
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCC--chH
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ--QPE 318 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~--~~~ 318 (411)
+++++|+||+|++.++|.++++...++.||.|+++||++++|++|+|.+++++++|+||+.+|+|++++.+++++ ++
T Consensus 240 ~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~- 318 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEE- 318 (443)
T ss_dssp TTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTTTCHHHHHHHHHHHHTTHHHHHH-
T ss_pred CCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCCCcHHHHHHHHHHhhhhhHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998776 64
Q ss_pred HHHhhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 319 LLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 319 ~~~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+.+|+.+|+||++||++|+++++||||+++||+|||||++ .+++...+.++++++||++||+|||++||+||..+
T Consensus 319 ~~~k~~~~~f~l~d~~~q~~~~~kmg~~~~~~~m~pg~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~ 393 (443)
T 3dm5_A 319 DIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGY-SLPDDVISIGEERLKKFKVIMDSMTEEELLNPEII 393 (443)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTTCC--------------------CCCCHHHHHHHHHHHTTSCHHHHHCGGGC
T ss_pred HHHHHhhCCcCHHHHHHHHHHHHhccCHHHHHHHCCCchh-hcchhhhhhhHHHHHHHHHHHHcCCHHHhcCchhc
Confidence 8899999999999999999999999999999999999983 44444456789999999999999999999999654
No 2
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=6.2e-78 Score=612.85 Aligned_cols=386 Identities=39% Similarity=0.659 Sum_probs=344.2
Q ss_pred HHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhc
Q 015221 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKML 87 (411)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll 87 (411)
++|+++|++|+|++++||+++++.+++|+.+|+++||+++++.+|++++++++.++++..+++|.++++++|+++|.++|
T Consensus 4 ~~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L 83 (433)
T 3kl4_A 4 ENIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLF 83 (433)
T ss_dssp TTHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhc
Confidence 36778889999999999999999999999999999999999999999999999998998999999999999999999999
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCC
Q 015221 88 DPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESD 167 (411)
Q Consensus 88 ~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d 167 (411)
++..........++.+|+++|++||||||++++||.+++.+|++|+++++|+||+++++|+..++...++|++......+
T Consensus 84 ~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d 163 (433)
T 3kl4_A 84 GGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN 163 (433)
T ss_dssp CSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC
T ss_pred CccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC
Confidence 97544433444568999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCCCCCc--chHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEE
Q 015221 168 PVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (411)
Q Consensus 168 ~~~i~~~~l~~~~~~~~d~viIDTaG~~~--~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~v 245 (411)
|..++..++..+...+||++||||||+.+ .+..++.++..+.....|+.+++|+|++.|+++.+++..|++.++++++
T Consensus 164 p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gV 243 (433)
T 3kl4_A 164 PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSV 243 (433)
T ss_dssp HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEE
Confidence 99999999999988899999999999988 8889999999998888999999999999999999999999988899999
Q ss_pred EEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHHhhhc
Q 015221 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSE 325 (411)
Q Consensus 246 IlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~~~~~ 325 (411)
|+||+|++.++|.++++...++.||.|+++||+++++++|+|.+++++++|+||+.+|+|++++.+++++++++++|+.+
T Consensus 244 IlTKlD~~a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~gd~~~l~e~~~~~~~~~~~~~~~~k~~~ 323 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRILGMGDIESILEKVKGLEEYDKIQKKMEDVME 323 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHHCSSHHHHHHHHHHHC---------------
T ss_pred EEecccccccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhcCCchHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--cccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCcc---ccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 326 G--NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPK---GREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 326 ~--~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~---~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
| +||++||++|+++++||||+++||+|||||++ ++++ ...+.++++++||++||+|||++||+||..+
T Consensus 324 g~~~f~~~d~~~q~~~~~kmg~~~~~~~m~pg~~~-~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~p~~~ 396 (433)
T 3kl4_A 324 GKGKLTLRDVYAQIIALRKMGPLSKVLQHIPGLGI-MLPTPSEDQLKIGEEKIRRWLAALNSMTYKELENPNII 396 (433)
T ss_dssp ----CCHHHHHHHHHHHHHCCSSSGGGGTTTCCCC-CSSTTHHHHHHTTSSCCCSHHHHHHSSCSSTTTCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHhccCHHHHHHhCCCCcc-ccccchhhhhhhhHHHHHHHHHHHHcCCHHHhhCchhc
Confidence 9 89999999999999999999999999999984 4442 2345678999999999999999999999654
No 3
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=2.7e-70 Score=555.87 Aligned_cols=380 Identities=32% Similarity=0.480 Sum_probs=345.8
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||++|+++|++++++|+|+++++|+++++.+++++.+|+++||+++++++|++++++++.++++..+++|.+++.+++++
T Consensus 1 m~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (425)
T 2ffh_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYE 80 (425)
T ss_dssp CCHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec
Q 015221 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (411)
Q Consensus 82 ~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~ 161 (411)
+|...+++...++.+. ++.+|+++|++||||||++.+||.+++.+|++|.++++|++|+++.+|+..++.+.+++++.
T Consensus 81 ~L~~~~~~~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhCCCcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 9999998755455554 67899999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCC
Q 015221 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (411)
Q Consensus 162 ~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~ 241 (411)
.....+|.+++.++++.++..+||++||||||+.+.+..++.++..+.....|+.+++|+|++.+++..+.+..|++.++
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~ 238 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCC
Confidence 77778899988888888877799999999999998888889899888888899999999999999999999999988888
Q ss_pred ceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHHH
Q 015221 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQ 321 (411)
Q Consensus 242 ~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~~ 321 (411)
+.++|+||+|.+.++|.++++...+|.||.|+++||+++++++|+|.+++++++|+||+.+|+|++++.+++++++++.
T Consensus 239 i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~ilg~gD~~~lie~a~~~~~~~~~~~~~- 317 (425)
T 2ffh_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSA- 317 (425)
T ss_dssp CCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHTSSCCCCHHHHHHHC-----------
T ss_pred ceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHhcCCcHHHHHHhcccccCHHHHHHHH-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999888776665553
Q ss_pred hhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 322 KLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 322 ~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+ +|+++||++|+++++||||++++++|+||++. . .+.++++++||++||+|||++||+||..+
T Consensus 318 ---~-~f~~~d~~~ql~~~~kmg~~~~~~~~~Pg~~~-~-----~~~~~~~~~~~~~i~~smt~~e~~~p~~~ 380 (425)
T 2ffh_A 318 ---K-ELSLEDFLKQMQNLKRLGPFSEILGLLPGVPQ-G-----LKVDEKAIKRLEAIVLSMTPEERKDPRIL 380 (425)
T ss_dssp -----CCCHHHHHHHHHHHHHTCCCTTGGGTSCSCSC-C-----TTSCHHHHHHHHHHHHTSCHHHHHCGGGC
T ss_pred ---H-hcCHHHHHHHHHHhhCcCChhhhhccCCCchh-h-----ccccHHHHHHHHHHHHcCCHHHhcCcccc
Confidence 2 89999999999999999999999999999972 2 23579999999999999999999999876
No 4
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=1.8e-70 Score=560.22 Aligned_cols=392 Identities=29% Similarity=0.478 Sum_probs=351.6
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||++|+++|++++++|+|++++||+++++.+++++.+|+++||+++++++|++++++++.++++..+++|.+++.++|++
T Consensus 1 m~~~l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (433)
T 2xxa_A 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (433)
T ss_dssp ---CHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 82 ~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
+|.+++++...++....+++++|+++|++||||||++++||.+|+++ |++|++|++|+||+++.+|+..++...+++++
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp HHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred HHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 99999987655555555678999999999999999999999999998 99999999999999999999999999999998
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 161 ~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
......+|..++.+++..+...+||++||||||+.+.+..++.++..+.....|+.+++|+|++.+++....+..|+..+
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l 240 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccC
Confidence 87777789998888888887778999999999999888888888888888889999999999999999888888998878
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHH
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (411)
++.++|+||+|...++|.++++...++.|+.|+|+|++++++.+|+|..++++++|+||+.+|+|++++.++++++.++.
T Consensus 241 ~i~gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~~~~l~ 320 (433)
T 2xxa_A 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320 (433)
T ss_dssp CCCCEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhhhHHHH
Confidence 88899999999999989999999999999999999999999999999999999999999999999999988777778899
Q ss_pred HhhhcC-cccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 321 QKLSEG-NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 321 ~~~~~~-~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+|+.+| +|+++||++|++++.+|||++++++|+||++. +..+.....++++++|+++||+|||++||+||..+
T Consensus 321 ~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~-~~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~ 394 (433)
T 2xxa_A 321 SKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII 394 (433)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcch-hhhhhhccccHHHHHHHHHHHHcCCHHHhcCcccc
Confidence 999999 89999999999999999999999999999983 42121112578899999999999999999999987
No 5
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=100.00 E-value=4.5e-70 Score=565.03 Aligned_cols=393 Identities=63% Similarity=1.021 Sum_probs=351.1
Q ss_pred CchhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHH
Q 015221 1 MVLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIF 80 (411)
Q Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (411)
|||++|+++|+++|++|+++++++|+++++.+++++.+|+++||+++++++|++++++++.++++.++++|.+++.++++
T Consensus 1 m~~~~l~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 80 (504)
T 2j37_W 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVF 80 (504)
T ss_dssp -------CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCccee
Q 015221 81 NELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFY 160 (411)
Q Consensus 81 ~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~ 160 (411)
++|.+++++...++.+...++++|+++|+|||||||++++||.+++++|++|++|++|+||+++++|+..++++.+++++
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 99999999866666554567889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 161 GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 161 ~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
...+..||++++.+++..+...+||++||||||+.+.+..++.++..+.....||.+++|+|++.+++....+..|++.+
T Consensus 161 ~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~ 240 (504)
T 2j37_W 161 GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV 240 (504)
T ss_dssp ECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc
Confidence 87788899999988999887789999999999999877788888877776678999999999999988888888888766
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHH
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (411)
++.++|+||+|...++|.++++...+|.||.|+++|++++++.+|+|.+++|+++|+||+.+|+|++.+. +++++.++.
T Consensus 241 ~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~-~~~~~~~l~ 319 (504)
T 2j37_W 241 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL-KLDDNEALI 319 (504)
T ss_dssp CCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT-TTCCCTTTT
T ss_pred CceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH-HHHHHHHHH
Confidence 6679999999999888889999899999999999999999999999999999999999999999999998 566677889
Q ss_pred HhhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcC---cccH
Q 015221 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQL---LFMC 394 (411)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~---~~~~ 394 (411)
+|+..|+|+++||++|++++.|||++++|++||||++...++....+.+++.++|+++||+|||++||+| |..|
T Consensus 320 ~k~~~g~~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~ 396 (504)
T 2j37_W 320 EKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVF 396 (504)
T ss_dssp TSCTTSGGGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCccc
Confidence 9999999999999999999999999999999999998311232234568999999999999999999999 7654
No 6
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=7.6e-69 Score=547.99 Aligned_cols=388 Identities=44% Similarity=0.735 Sum_probs=337.0
Q ss_pred hhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHH
Q 015221 3 LAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNE 82 (411)
Q Consensus 3 ~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 82 (411)
|++|+++|++++++|+|++++||+++++.+++++.+|+++||+.+++++|.+++++...+.++.++.++.+++.++++++
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (432)
T 2v3c_C 1 MDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEE 80 (432)
T ss_dssp CCHHHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc
Q 015221 83 LCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (411)
Q Consensus 83 L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~ 162 (411)
|.++++....++....+++.+|+++|++||||||++++||.+++++|++|++|++|+||+++++||+.++.+.+++++..
T Consensus 81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 99999876555544545678999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC-
Q 015221 163 Y-TESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV- 240 (411)
Q Consensus 163 ~-~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~- 240 (411)
. ++.||..++.+++..+ .+||++||||||+.+.+..++.++..+.....||.+++|+|++.+++....+..|++.+
T Consensus 161 ~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~ 238 (432)
T 2v3c_C 161 ETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVG 238 (432)
T ss_dssp SSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhccc
Confidence 6 6678877777777766 68999999999999888888888877777778999999999999998888888888777
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCCchHHH
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELL 320 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~~~~~~ 320 (411)
++.++|+||+|...++|.++++...++.|+.|+++||+++++.+|+|.+++|+++|+||+..|++++++.+++++ .++.
T Consensus 239 ~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~-~~~~ 317 (432)
T 2v3c_C 239 EIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKT-EESI 317 (432)
T ss_dssp SCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSS-STTH
T ss_pred CCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-HHHH
Confidence 779999999999988888999999999999999999999999999999999999999999999999999998887 8899
Q ss_pred HhhhcCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 321 QKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 321 ~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+|+..|+|+++||++|+++++||||+++||+||||++. +.+....+.++++++||+|||+|||++||+||..|
T Consensus 318 ~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~-~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i 390 (432)
T 2v3c_C 318 DAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGG-AMPKELSHLTEAKIKKYKVIISSMTKEERENPKII 390 (432)
T ss_dssp HHHCCSCCHHHHHHHHTTTTSCC------------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHcccccc-ccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc
Confidence 99999999999999999999999999999999999873 33222234568899999999999999999999965
No 7
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=1.7e-46 Score=365.93 Aligned_cols=293 Identities=43% Similarity=0.688 Sum_probs=269.3
Q ss_pred hhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHH
Q 015221 4 AQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNEL 83 (411)
Q Consensus 4 ~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L 83 (411)
++|+++|++++++++|+++++|+++++.+++++.+|+++||+++++++|++++++++.++++.+++++.+++.+++.++|
T Consensus 1 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (297)
T 1j8m_F 1 SKLLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDEL 80 (297)
T ss_dssp --CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999989888889999999999999999
Q ss_pred HhhcCCCCCC-CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc
Q 015221 84 CKMLDPGKPS-FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (411)
Q Consensus 84 ~~ll~~~~~~-~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~ 162 (411)
...+++...+ +.+.. ++.+++++|++|+||||++++||.+++.+|++|+++++|+||+++.+|++.++++.+++++..
T Consensus 81 ~~~~~~~~~~~i~~~~-~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 81 SNLFGGDKEPKVIPDK-IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp HHHTTCSCCCCCSCSS-SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHhccccccccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 9999875444 44443 378999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCc--chHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 163 YTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK--QEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 163 ~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~--~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
....+|.+++.+++..++..+||+|||||||+.+ .++.++.++..+.....+|.+++|+|++.+++..+.++.|++.+
T Consensus 160 ~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~ 239 (297)
T 1j8m_F 160 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQAS 239 (297)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhC
Confidence 6678899988888888877899999999999998 77788888888877789999999999999988888888888777
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~ 297 (411)
++.++|+||+|...++|.++++...++.||.|+++||+++++++|+|.+++++++|+
T Consensus 240 ~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll~~ 296 (297)
T 1j8m_F 240 KIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHHH 296 (297)
T ss_dssp TTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTCTT
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 889999999999999999999999999999999999999999999999999999986
No 8
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=7.8e-44 Score=351.36 Aligned_cols=296 Identities=32% Similarity=0.594 Sum_probs=267.5
Q ss_pred chhhHHHHHHHHHHHhhc-------------------CCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcc
Q 015221 2 VLAQLGGSISRAIQQMSN-------------------ATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNL 62 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~-------------------~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~ 62 (411)
||+.|.++|++..+++.+ +++++|+++++.+++|+.+|+++||+++++++|++++++++.+
T Consensus 7 mf~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~ 86 (328)
T 3e70_C 7 MFGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVG 86 (328)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 799999999877765443 6889999999999999999999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHHHHHHhhcCCCCCCCCC-----CCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 63 DDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTP-----KKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 63 ~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~-----~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+++..+.+|.+++.++++++|.+++++.. +... ...++.+++++|++||||||++++|+.++...+.+|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 87 KKVRIGTDKGKIIEEAVKEAVSEILETSR-RIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp CEEECC---CHHHHHHHHHHHHHHSCCSS-CCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccCCccCHHHHHHHHHHHHHHHHhCCcc-ccchhhhcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 98888999999999999999999998653 2221 34567899999999999999999999999999999999999
Q ss_pred CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCee
Q 015221 138 DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLV 217 (411)
Q Consensus 138 D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~v 217 (411)
|+||+++.+|++.++.+.+++++......+|...+.+.+......++|++++||+|+.+.+..++.++..+..+..||..
T Consensus 166 D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~ 245 (328)
T 3e70_C 166 DTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLV 245 (328)
T ss_dssp CCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEE
T ss_pred cccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999988877788898888888888777789999999999988888889999888888899999
Q ss_pred EEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC
Q 015221 218 IFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 218 llVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~ 297 (411)
++|+|++.+++..++++.|++..+++++|+||+|++.++|.++++...++.||.|+++||+++|+++|+|.+++++++|.
T Consensus 246 llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~llg~ 325 (328)
T 3e70_C 246 IFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIFGE 325 (328)
T ss_dssp EEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHTC-
T ss_pred EEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHhCC
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 015221 298 G 298 (411)
Q Consensus 298 G 298 (411)
.
T Consensus 326 ~ 326 (328)
T 3e70_C 326 E 326 (328)
T ss_dssp -
T ss_pred c
Confidence 4
No 9
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=1.4e-42 Score=338.04 Aligned_cols=295 Identities=34% Similarity=0.509 Sum_probs=260.0
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||+.|+++|+++++++.++++++++++.+.+++++.+|+.+|++++++.++++++.....++.+..+.++.+++.+.+.+
T Consensus 1 m~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (295)
T 1ls1_A 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYE 80 (295)
T ss_dssp CCHHHHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887777665566777788888999
Q ss_pred HHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec
Q 015221 82 ELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161 (411)
Q Consensus 82 ~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~ 161 (411)
.+...++....+..+. ++.+++++|++|+||||++.+||.+++..|.+|.++++|++|+++.+|+..+....+++++.
T Consensus 81 ~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~ 158 (295)
T 1ls1_A 81 ALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (295)
T ss_dssp HHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE
Confidence 9998887543344444 67899999999999999999999999999999999999999999999999888888999887
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCC
Q 015221 162 SYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVS 241 (411)
Q Consensus 162 ~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~ 241 (411)
.....+|.++.+.+++.+...+||++||||||+...+...+.++..+.....|+.+++|+|+..+++..+.++.|++.++
T Consensus 159 ~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~ 238 (295)
T 1ls1_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG 238 (295)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCC
Confidence 66667888888888888866789999999999988887888888888877789999999999988888888888887788
Q ss_pred ceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCC
Q 015221 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMG 298 (411)
Q Consensus 242 ~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~G 298 (411)
+.++|+||+|...++|.++++...+|.||.|+++||+++|+++|+|.+++++++|||
T Consensus 239 i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll~~g 295 (295)
T 1ls1_A 239 VTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 295 (295)
T ss_dssp CCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999999999997
No 10
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=9.7e-42 Score=333.37 Aligned_cols=272 Identities=31% Similarity=0.490 Sum_probs=239.2
Q ss_pred HHHHHHHHHhh-cCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhh
Q 015221 8 GSISRAIQQMS-NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (411)
Q Consensus 8 ~~l~~~~~~l~-~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~l 86 (411)
++|++.++++. |+ +++|+ .+++++.+|+++||+.+++++|++++++ .+|. +.++++++|.++
T Consensus 28 ~~~~~~~~~~~~~~-~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~----------~~~~--~~~~~~~~l~~~ 90 (306)
T 1vma_A 28 ETFFGRVVKLLKGK-KLDDE----TREELEELLIQADVGVETTEYILERLEE----------KDGD--ALESLKEIILEI 90 (306)
T ss_dssp HHTHHHHHHHHTTC-CCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHTT----------CCSC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHh----------cCHH--HHHHHHHHHHHH
Confidence 34445566665 45 88984 6789999999999999999999998865 2343 779999999999
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+++.. ++.+...++.+|+++|++||||||++.+||.+++..|.+|.++++|+||+++.+|+..++.+.+++++......
T Consensus 91 l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~ 169 (306)
T 1vma_A 91 LNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGA 169 (306)
T ss_dssp TCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTC
T ss_pred hCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCcc
Confidence 98754 55554556789999999999999999999999999999999999999999999999999999999988877778
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc------CCCeeEEEeeCcchhhHHHHHHHHhccC
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAFKQSV 240 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvda~~g~~~~~~a~~f~~~~ 240 (411)
+|..++.+++..+...+||++|+||||+.+....++.++..+.... .|+.+++|+|++++++....++.|.+..
T Consensus 170 ~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~~~~ 249 (306)
T 1vma_A 170 DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV 249 (306)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 8888888888887778999999999999888888888887776654 4899999999999988888888888878
Q ss_pred CceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC
Q 015221 241 SVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM 297 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~ 297 (411)
++.++|+||+|.+.++|.++++...++.||.|+++||+++|+++|+|.+++++++|.
T Consensus 250 ~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~~ 306 (306)
T 1vma_A 250 NVTGIILTKLDGTAKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLSE 306 (306)
T ss_dssp CCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTCC
T ss_pred CCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhCC
Confidence 889999999999999999999999999999999999999999999999999999873
No 11
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1.8e-41 Score=333.66 Aligned_cols=284 Identities=28% Similarity=0.499 Sum_probs=247.7
Q ss_pred hhhHHHHHHHHHHHhhcC-CcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 3 LAQLGGSISRAIQQMSNA-TIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 3 ~~~l~~~l~~~~~~l~~~-~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
+..++++|+..++++.+. +.++|+ .+++++.+|+++||+++++.+|++++++++.++++.. .+.+++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 80 (320)
T 1zu4_A 11 MLKSAFNFSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDALVE 80 (320)
T ss_dssp THHHHHHHHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHHHH
Confidence 456777888888888875 789986 5789999999999999999999999999887665432 17789999
Q ss_pred HHHhhcCCCC-----CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhh---
Q 015221 82 ELCKMLDPGK-----PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT--- 153 (411)
Q Consensus 82 ~L~~ll~~~~-----~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~--- 153 (411)
+|.+++++.. .++.+...++.+|+++|++|+||||++.+||.+++..|++|+++++|+||+++.+|+..++.
T Consensus 81 ~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~ 160 (320)
T 1zu4_A 81 SLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRL 160 (320)
T ss_dssp HHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccc
Confidence 9999998765 45666566789999999999999999999999999999999999999999999999998877
Q ss_pred hcCccee-ccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc------CCCeeEEEeeCcch
Q 015221 154 KAKIPFY-GSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIG 226 (411)
Q Consensus 154 ~~~v~~~-~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvda~~g 226 (411)
+.+++++ ......+|...+.+.+......+||+|||||||+.+.++.++.++..+...+ .||.+++|+|++.+
T Consensus 161 ~~~l~vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~ 240 (320)
T 1zu4_A 161 NNKVDLVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG 240 (320)
T ss_dssp CTTEEEECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT
T ss_pred cCCceEEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc
Confidence 7888887 4445567877777878777778999999999999988888888887665543 48999999999988
Q ss_pred hhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC
Q 015221 227 QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 227 ~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g 296 (411)
++.++.++.|++.+++.|+|+||+|.+.++|.++++...++.||.|+++||+++|+++|+|..++++++|
T Consensus 241 ~~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 241 QNGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred HHHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 8888888889887888999999999999999999999999999999999999999999999999999998
No 12
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-39 Score=323.05 Aligned_cols=288 Identities=28% Similarity=0.433 Sum_probs=251.3
Q ss_pred chhhHHHHHHHHHHHhh-------cCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHH
Q 015221 2 VLAQLGGSISRAIQQMS-------NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRI 74 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~-------~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (411)
+|+.|+++|++..+++. |++.++ +++.+++++.+|+++||+++++.+|++++++++.+++ +++.++
T Consensus 56 ~f~~l~~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~----~~~~~~ 128 (359)
T 2og2_A 56 DVEKVFSGFSKTRENLAVIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGSE 128 (359)
T ss_dssp HHHHHHHHTHHHHHHHTHHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHHH
Confidence 68899999999988886 444444 7788999999999999999999999999999876654 367788
Q ss_pred HHHHHHHHHHhhcCCCC--CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhh
Q 015221 75 IQQAIFNELCKMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA 152 (411)
Q Consensus 75 ~~~~v~~~L~~ll~~~~--~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~ 152 (411)
+.++++++|.+++++.. .++.+...++.+++++|++||||||++++|+.++...+.+|.+.+.|+||+++.+|+..++
T Consensus 129 ~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~ 208 (359)
T 2og2_A 129 IKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWA 208 (359)
T ss_dssp HHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHH
Confidence 99999999999998765 5566655677899999999999999999999999988899999999999999999999998
Q ss_pred hhcCcceeccCCC-CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHh------cCCCeeEEEeeCcc
Q 015221 153 TKAKIPFYGSYTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDSSI 225 (411)
Q Consensus 153 ~~~~v~~~~~~~~-~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~------~~~d~vllVvda~~ 225 (411)
.+.+++++..... .+|...+.+.+......+++++++||+|+.+....++.++...... ..|+++++|+|++.
T Consensus 209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptt 288 (359)
T 2og2_A 209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNT 288 (359)
T ss_dssp HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGG
T ss_pred HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCC
Confidence 8888988776555 6788788888877666678999999999988877777777543332 26899999999999
Q ss_pred hhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC
Q 015221 226 GQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 226 g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g 296 (411)
|++...++..|++..+++++|+||+|++.++|.++++...++.||.|+++||+++|+++|+|..++++++|
T Consensus 289 glD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 289 GLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp GGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 99998888889877788999999999999999999999999999999999999999999999999999875
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=5.3e-40 Score=320.96 Aligned_cols=283 Identities=33% Similarity=0.516 Sum_probs=225.1
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||+.|+++|+++++++.++..+++ ++++.+++++.+|+++||+.+++.+|++++++++. +++.+++++
T Consensus 3 ~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 70 (304)
T 1rj9_A 3 FFDRLKAGLAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKE 70 (304)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 699999999999999999999998 88999999999999999999999999999988654 345688999
Q ss_pred HHHhhcCCCCC-----CCCCC-------CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHH
Q 015221 82 ELCKMLDPGKP-----SFTPK-------KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK 149 (411)
Q Consensus 82 ~L~~ll~~~~~-----~~~~~-------~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~ 149 (411)
+|.+++++... ++... .+++.+++++|++||||||++++|+.++...+.+|.+.+.|++|+++.+|+.
T Consensus 71 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~ 150 (304)
T 1rj9_A 71 KLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 150 (304)
T ss_dssp HHTTTTCTTCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHH
T ss_pred HHHHHhCcccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHH
Confidence 99999986542 23321 2357899999999999999999999999988899999999999999999999
Q ss_pred HhhhhcCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHh------cCCCeeEEEeeC
Q 015221 150 QNATKAKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEA------TNPDLVIFVMDS 223 (411)
Q Consensus 150 ~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~------~~~d~vllVvda 223 (411)
.+..+.+++++......+|...+.+.+......+++++++||+|+.+....++.++..+..+ ..|+++++++|+
T Consensus 151 ~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa 230 (304)
T 1rj9_A 151 EWGKRLSIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDA 230 (304)
T ss_dssp HHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEET
T ss_pred HHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcH
Confidence 99888888887766667887777777777666689999999999988777778777654433 258999999999
Q ss_pred cchhhHHHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC
Q 015221 224 SIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 224 ~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g 296 (411)
+++++..+.+..|++..+++++|+||.|.+.++|.++++...++.||.|+|+||+++|+++|+|..++++++|
T Consensus 231 ~t~~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 231 VTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp TBCTHHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9999999999888877678999999999999999999999999999999999999999999999999999987
No 14
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=2.1e-39 Score=332.41 Aligned_cols=278 Identities=29% Similarity=0.475 Sum_probs=244.1
Q ss_pred HHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCC
Q 015221 14 IQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPS 93 (411)
Q Consensus 14 ~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~ 93 (411)
+.++.+.++++++ .+++|+.+|+++||+++++.+|++++++++.+. ++++.+++.++|+++|.++|+....+
T Consensus 214 l~~~~~~~~ide~----~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~l~~~~~~ 285 (503)
T 2yhs_A 214 FISLFRGKKIDDD----LFEELEEQLLIADVGVETTRKIITNLTEGASRK----QLRDAEALYGLLKEEMGEILAKVDEP 285 (503)
T ss_dssp HHHHHTTCBCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH----TCCBGGGHHHHHHHHHHHHHHTTBCC
T ss_pred HHHHhccCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 4444455778875 578999999999999999999999999887653 45667888999999999999876666
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHH
Q 015221 94 FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (411)
Q Consensus 94 ~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~ 173 (411)
+.+...++.+++|+|++|||||||+++|+.++...+.+|.+.+.|++|.++.+|+..++.+.+++++......++...+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~ 365 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 365 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHH
Confidence 66666678899999999999999999999999988899999999999999999999988888888877666667888888
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc------CCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEE
Q 015221 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIV 247 (411)
Q Consensus 174 ~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIl 247 (411)
+.+..+...++|++||||+|+.+.+..++.++..+.... .|+.++||+|+++|++.+++++.|++.++++++|+
T Consensus 366 e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itgvIl 445 (503)
T 2yhs_A 366 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITL 445 (503)
T ss_dssp HHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCEEEE
Confidence 888888778999999999999988888888887665433 48899999999999999999999998888999999
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGD 299 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gd 299 (411)
||+|++.++|.++++...++.||.|+|+||+++||.+|++..|+++++|+.|
T Consensus 446 TKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~~ 497 (503)
T 2yhs_A 446 TKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED 497 (503)
T ss_dssp ECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC--
T ss_pred EcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999873
No 15
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-37 Score=299.47 Aligned_cols=283 Identities=28% Similarity=0.443 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHhh-cCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHH
Q 015221 6 LGGSISRAIQQMS-NATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELC 84 (411)
Q Consensus 6 l~~~l~~~~~~l~-~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~ 84 (411)
.++.|. .++++. |+++++ +++.+++++.+|+++||+.+++.+|++++++++.+++ +++.+++.++++++|.
T Consensus 10 ~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~ 81 (302)
T 3b9q_A 10 TRENLA-VIDELLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGK----LKSGSEIKDALKESVL 81 (302)
T ss_dssp HHHHHT-HHHHHHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTS----CCSHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcC----CCCHHHHHHHHHHHHH
Confidence 344555 556555 466776 5678899999999999999999999999999876654 3566889999999999
Q ss_pred hhcCCCC--CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc
Q 015221 85 KMLDPGK--PSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS 162 (411)
Q Consensus 85 ~ll~~~~--~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~ 162 (411)
+++++.. .++.+...++.+++++|++||||||++++||.++...+.+|.+.+.|++|+++.+|+..++.+.+++++..
T Consensus 82 ~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q 161 (302)
T 3b9q_A 82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA 161 (302)
T ss_dssp HHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC
T ss_pred HHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEe
Confidence 9998755 45555555678999999999999999999999999888999999999999999999999988888888765
Q ss_pred CCC-CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc------CCCeeEEEeeCcchhhHHHHHHH
Q 015221 163 YTE-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT------NPDLVIFVMDSSIGQAAFDQAQA 235 (411)
Q Consensus 163 ~~~-~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~------~~d~vllVvda~~g~~~~~~a~~ 235 (411)
... .+|...+.+.+......+++.+++||+|+.+.....+.++......+ .|+++++|+|++.+++...++..
T Consensus 162 ~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~ 241 (302)
T 3b9q_A 162 EGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQARE 241 (302)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHH
Confidence 555 67777777777766556789999999999887777777775433322 58899999999999998888888
Q ss_pred HhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC
Q 015221 236 FKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 236 f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g 296 (411)
|++..+++++++||+|++.++|.++++...++.||.|+++||+++|+++|+|..++++++|
T Consensus 242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 8877778999999999999999999999999999999999999999999999999999875
No 16
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=100.00 E-value=7.2e-34 Score=276.67 Aligned_cols=259 Identities=23% Similarity=0.313 Sum_probs=208.4
Q ss_pred CHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCe
Q 015221 24 DEKVLNECLNEITRALLQADVQFKLVREMQTNI-KKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPS 102 (411)
Q Consensus 24 ~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~ 102 (411)
.+.++.+.+++++.+|+++||+.+++.++++++ +...... +.++ +++.++++++|.++++.... ... ..++.
T Consensus 34 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~~l~~~~~-~~~-~~~g~ 106 (296)
T 2px0_A 34 YQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAG----GLTE-ENVVGKLQEILCDMLPSADK-WQE-PIHSK 106 (296)
T ss_dssp -----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSS----CCCT-TTHHHHHHHHHHTTSCCGGG-SCC-CCCSS
T ss_pred cccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhccc----CCCH-HHHHHHHHHHHHHHhCCccc-ccc-cCCCc
Confidence 334567789999999999999999999999999 4444332 3344 56789999999999975432 222 23467
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+++++|++||||||++++||.+++. +|++|+++++|+||+++.+|+..++...+++++.. .++.. ...++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~al~~~-- 180 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQAKELF-- 180 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHHHHHG--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHHHHHh--
Confidence 9999999999999999999999985 79999999999999999999999999989887643 23433 34555544
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCChhhHH
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKGGGAL 260 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~~g~~l 260 (411)
.+||++|+||||+.+.+...+.++..+.....++.+++|+|++.+..... .+..|. .+++.++|+||+|.+.++|.++
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~ 259 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVF 259 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHH
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHH
Confidence 57999999999999888777777766654445788999999988754443 344554 4677899999999999999999
Q ss_pred HHHHhcCCCeEEecccccc-cccccCCcchhhhhhcC
Q 015221 261 SAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296 (411)
Q Consensus 261 ~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g 296 (411)
++...+|.||.|+++||++ +|+.+|+|..++++++|
T Consensus 260 ~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 260 NILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp HHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred HHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 9999999999999999999 89999999999999986
No 17
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.5e-22 Score=168.59 Aligned_cols=74 Identities=32% Similarity=0.550 Sum_probs=63.2
Q ss_pred HHhhhcCcccHHHHHHHHHHHHccCChhHHhhcCC-CCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 320 LQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLP-GFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 320 ~~~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~~p-g~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
++++.+|+||++||++|+++++||||+++|++||| |++ ..++..+.+.++++++||+|||+|||++||+||..+
T Consensus 2 ~~k~~~g~Ftl~Df~~Ql~qi~kMG~l~~i~~MiP~G~~-~~~~~~~~~~~e~~lkr~~aII~SMT~~Er~~P~ii 76 (119)
T 2jqe_A 2 SGTMEKGTFTLKDIYKQIEAMNKMGPVRKIFEMLPFGLG-LKVDNDVMEMTQEKMKKFRVIMDSMTEEELLNPKII 76 (119)
T ss_dssp ---CCCCSSCTHHHHHHHTTCCCCCCCSCSSCCCCSCCC-SSCCCCSSCCCCCHHHHHHHHHHHSCHHHHHCGGGC
T ss_pred hhHHHcCCcCHHHHHHHHHHHHhcCCHHHHHHHCccchh-hccchhhHhhhHHHHHHHHHHHHhCCHHHHhChhhc
Confidence 46788999999999999999999999999999999 998 323433345688999999999999999999999976
No 18
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=99.83 E-value=4.6e-21 Score=161.04 Aligned_cols=70 Identities=51% Similarity=0.889 Sum_probs=58.0
Q ss_pred cCcccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcC---cccH
Q 015221 325 EGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQL---LFMC 394 (411)
Q Consensus 325 ~~~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~---~~~~ 394 (411)
.|+||++||++|+++++||||+++|++||||++..+++....+.++++++||+|||+|||++||+| |..|
T Consensus 12 ~g~Ftl~Df~~Ql~qi~KMG~l~~im~MiPGm~~~~~~~~~~~~~e~~lkr~eaII~SMT~~Er~n~~~P~ii 84 (129)
T 1mfq_C 12 HGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVF 84 (129)
T ss_dssp CSSCCHHHHHHHHHHTTSSHHHHHTTTTCSCC--------CCHHHHHHHHHHHHHHTTSCHHHHTCTTHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHcCCHHHHHHHCCCCCccccchhhhhhhHHHHHHHHHHHHccCHHHHhcCCCcccc
Confidence 589999999999999999999999999999998311333345678999999999999999999999 8765
No 19
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=99.82 E-value=1.7e-21 Score=158.71 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+||++||++|+++++||||+++|++||||++. +......+.++++++||+|||+|||++||+||..|
T Consensus 1 ~F~l~Df~~Ql~qi~kMG~l~~i~~miPG~~~-~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~P~ii 67 (105)
T 1hq1_A 1 GFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQ-IPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII 67 (105)
T ss_dssp CCCHHHHHHHHTC-----------------------------CCSSHHHHHHHHHTSCHHHHHCGGGC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCCc-ccchhhhhhhHHHHHHHHHHHHcCCHHHhhChhhc
Confidence 59999999999999999999999999999983 42222334678999999999999999999999976
No 20
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=99.81 E-value=1e-20 Score=155.25 Aligned_cols=68 Identities=51% Similarity=0.881 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHHHccCChhHHhhcCCCCCcccCccccchhhHHHHHHHHHHHhCCCHHhhcC---cccH
Q 015221 327 NFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGREKESQAKIKRYMTMMDSMTNEGKQL---LFMC 394 (411)
Q Consensus 327 ~f~~~d~~~ql~~~~~~g~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~e~~~---~~~~ 394 (411)
+||++||++|+++++||||+++|++||||++..+.+....+.++++++||+|||+|||++||+| |..+
T Consensus 1 ~Ftl~Df~~Ql~qi~kMG~l~~i~~MiPG~~~~~~~~~~~~~~~~~lkr~~aII~SMT~~Er~~~~~P~ii 71 (109)
T 1qb2_A 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVF 71 (109)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHSTTSCTTTTCTTCHHHHHHHHHHHHHHHTTSCHHHHHSTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHCCCCcccccchhhhhhhHHHHHHHHHHHHcCCHHHHhcCCCcccc
Confidence 5999999999999999999999999999998312133334578999999999999999999999 8765
No 21
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=7.8e-17 Score=160.24 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=115.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch---HHH----HHHHhhhhcCcceeccCCCCC---hH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG---AFD----QLKQNATKAKIPFYGSYTESD---PV 169 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~---a~~----qL~~~~~~~~v~~~~~~~~~d---~~ 169 (411)
+..+|+++|.|||||||++++|+..+...|++|+++++|+..+. +.. .+.......++.+....+... ..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45789999999999999999999999999999999999986653 221 112222223444333222222 12
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeC
Q 015221 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 170 ~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK 249 (411)
...++.+..+...+++++||||||.......+ ...+|.+++|+|+..+...........+ .+..+|+||
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~~~---------~~~aD~vl~V~d~~~~~~~~~l~~~~~~--~p~ivVlNK 226 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEVAV---------ANMVDTFVLLTLARTGDQLQGIKKGVLE--LADIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHHHH---------HTTCSEEEEEEESSTTCTTTTCCTTSGG--GCSEEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHHHH---------HHhCCEEEEEECCCCCccHHHHHHhHhh--cCCEEEEEC
Confidence 33455566666779999999999977543221 2467999999998765332111111111 246899999
Q ss_pred CCCCCChhhHH--HHHHhcCCCeEEeccccccccc----ccC-CcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 250 MDGHAKGGGAL--SAVAATKSPVIFIGTGEHMDEF----EVF-DVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 250 ~D~~~~~g~~l--~~~~~~g~Pi~fi~~Ge~i~~l----~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
+|.....+... .... +.+..+ ..| .|...+|++.|.| ++.|++.+.+.++
T Consensus 227 ~Dl~~~~~~~~~~~~l~------------~~l~~~~~~~~~~~~~vi~iSA~~g~G-i~~L~~~i~~~~~ 283 (355)
T 3p32_A 227 ADGEHHKEARLAARELS------------AAIRLIYPREALWRPPVLTMSAVEGRG-LAELWDTVERHRQ 283 (355)
T ss_dssp CCGGGHHHHHHHHHHHH------------HHHHHHSTTCCSCCCCEEEEBGGGTBS-HHHHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHH------------HHHhhccccccCCCCceEEEEcCCCCC-HHHHHHHHHHHHH
Confidence 99864322211 1111 000000 112 4567799999999 9999999988863
No 22
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.63 E-value=1.6e-16 Score=163.30 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhh
Q 015221 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (411)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~l 86 (411)
..+.+.+++++.| .++..+++|+..|++.-..+++..+|.+.+ +...... -..-+..+..++..+
T Consensus 147 ~~~~~~a~~~l~g-------~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~-~~~~~~~-------~~~~i~~l~~~l~~~ 211 (462)
T 3geh_A 147 PQAAQTALAGLQG-------KLAHPIRQLRANCLDILAEIEARIDFEEDL-PPLDDEA-------IISDIENIAAEISQL 211 (462)
T ss_dssp HHHHHHHHHHHHT-------TTHHHHHHHHHHHHHHHHHHHHHTTSSSSS-CCCCTTT-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhch-------hHHHHHHHHHHHHHHHHHHHHhhccccccC-ChhhHHH-------HHHHHHHHHHHHHHH
Confidence 3567889999999 678889999999999888888888875511 1111111 123346677777777
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+.....+...+ ....|+++|.|||||||++|+|+ |.+.++++.- ++ ++.
T Consensus 212 ~~~~~~~~~~r--~~~kV~ivG~~nvGKSSLln~L~------~~~~a~v~~~---~g--------------------tT~ 260 (462)
T 3geh_A 212 LATKDKGELLR--TGLKVAIVGRPNVGKSSLLNAWS------QSDRAIVTDL---PG--------------------TTR 260 (462)
T ss_dssp TTTHHHHHHHH--HCEEEEEEECTTSSHHHHHHHHH------HHHBSCCSCC---TT--------------------CCH
T ss_pred HHHhhhhhhhc--CCCEEEEEcCCCCCHHHHHHHHh------CCCcccccCC---CC--------------------eeE
Confidence 75432221112 23569999999999999999999 5444444431 11 111
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHH-HHH-HHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCc
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-MRQ-VSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSV 242 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~e-l~~-i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~ 242 (411)
|... .....+++++.|+||||.....+..... +.. ......+|.+++|+|++.+.... .....+.. .+
T Consensus 261 d~~~------~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p 332 (462)
T 3geh_A 261 DVVE------SQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP 332 (462)
T ss_dssp HHHH------HEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC
T ss_pred EEEE------EEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc
Confidence 1000 1112346789999999985433221111 111 12234689999999998653222 22333332 35
Q ss_pred eEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 243 GAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 243 ~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
..+|+||+|....... +.+.++....+...+|+..|.| ++.|++.+.+.+..
T Consensus 333 iivV~NK~Dl~~~~~~------------------~~~~~~~~~~~~i~iSAktg~G-i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 333 LILVMNKIDLVEKQLI------------------TSLEYPENITQIVHTAAAQKQG-IDSLETAILEIVQT 384 (462)
T ss_dssp EEEEEECTTSSCGGGS------------------TTCCCCTTCCCEEEEBTTTTBS-HHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcchhh------------------HHHHHhccCCcEEEEECCCCCC-HHHHHHHHHHHHhc
Confidence 7889999998654211 0111222234556799999999 99999999887643
No 23
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.62 E-value=6e-16 Score=150.90 Aligned_cols=168 Identities=17% Similarity=0.253 Sum_probs=107.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
..++..|+++|.|||||||++|+|. |.++.+++..+ .+++..+....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~-----------~tT~~~~~~~~---------------- 53 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKA-----------GTTRMRVLGVK---------------- 53 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSS-----------CCCCSCEEEEE----------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCC-----------CceeeEEEEEE----------------
Confidence 4456889999999999999999999 98888777632 22222221110
Q ss_pred HHhcC-CCCEEEEeCCCCCcch--HHHHHHHHHHH--HhcCCCeeEEEeeCcchhh--HHHH-HHHHhccCCceEEEEeC
Q 015221 178 TFKKE-NCDLIIVDTSGRHKQE--AALFEEMRQVS--EATNPDLVIFVMDSSIGQA--AFDQ-AQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 178 ~~~~~-~~d~viIDTaG~~~~~--~~l~~el~~i~--~~~~~d~vllVvda~~g~~--~~~~-a~~f~~~~~~~~vIlnK 249 (411)
... +++++|+||||..... ..+...+.... ....+|.+++|+|++.+.. .... ...+...-.+..+|+||
T Consensus 54 --~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK 131 (308)
T 3iev_A 54 --NIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131 (308)
T ss_dssp --EETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred --ecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEEC
Confidence 012 6789999999986543 22333332221 2236799999999986532 2223 34444433457889999
Q ss_pred CCCCCChhhHHHHHHhcCCCeEEecccccccc-cccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 250 ~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
+|............. .+.+ +..+.+...+|+..|.| ++.|++.+.+.+++.
T Consensus 132 ~Dl~~~~~~~~~~~~-------------~l~~~~~~~~~i~~vSA~~g~g-v~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 132 IDKIGPAKNVLPLID-------------EIHKKHPELTEIVPISALKGAN-LDELVKTILKYLPEG 183 (308)
T ss_dssp GGGSSSGGGGHHHHH-------------HHHHHCTTCCCEEECBTTTTBS-HHHHHHHHHHHSCBC
T ss_pred ccCCCCHHHHHHHHH-------------HHHHhccCCCeEEEEeCCCCCC-HHHHHHHHHHhCccC
Confidence 998622222222211 1111 22456677899999999 999999999988543
No 24
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.62 E-value=4.5e-17 Score=167.90 Aligned_cols=235 Identities=17% Similarity=0.214 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhh
Q 015221 7 GGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKM 86 (411)
Q Consensus 7 ~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~l 86 (411)
..+.+.++++|+| .++..+++||..|++.-..+++..+|.++..+......+ ...+..+.+++..+
T Consensus 155 ~~~~~~a~~~l~G-------~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l-------~~~i~~l~~~l~~~ 220 (476)
T 3gee_A 155 ESAYRTAVSQMKG-------DLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDEL-------TMQIETLRSEVNRL 220 (476)
T ss_dssp HHHHHHHHHHHHT-------HHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-------cHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHH-------HHHHHHHHHHHHHH
Confidence 3567889999999 789999999999999877777766665431111111111 11234455555555
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+.....+...+ ....|+++|.|||||||++|+|+ +.+.++++. ...+++.-+..
T Consensus 221 ~~~~~~~~~~r--~~~kV~ivG~~nvGKSSLln~L~------~~~~a~vs~-----------~~gtT~d~~~~------- 274 (476)
T 3gee_A 221 IDSYQHGRIVS--EGVSTVIAGKPNAGKSTLLNTLL------GQERAIVSH-----------MPGTTRDYIEE------- 274 (476)
T ss_dssp HHHHHHHHHHH--HCEEEEEECCTTSSHHHHHHHCC-----------------------------------CE-------
T ss_pred HHHHHhhHhhc--CCCEEEEECCCCCCHHHHHHHHh------CCCCcccCC-----------CCCceEEEEEE-------
Confidence 53221111111 23459999999999999999999 766666554 11111111110
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHH-HH-HHHHhcCCCeeEEEeeCcchhh------HHHHHHHHhc
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEE-MR-QVSEATNPDLVIFVMDSSIGQA------AFDQAQAFKQ 238 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~e-l~-~i~~~~~~d~vllVvda~~g~~------~~~~a~~f~~ 238 (411)
.+..+++.+.|+||||........... +. .......+|.+++|+|++.+.. .......+.
T Consensus 275 -----------~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~- 342 (476)
T 3gee_A 275 -----------CFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP- 342 (476)
T ss_dssp -----------EEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-
T ss_pred -----------EEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-
Confidence 011246789999999986533221111 01 1222347899999999986532 222222222
Q ss_pred cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 239 SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 239 ~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
-.+..+|+||+|.............. . .+.+...+|++.|.| ++.|++.+.+.+.
T Consensus 343 -~~piIvV~NK~Dl~~~~~~~~~~l~~----------------~-~~~~~i~vSAktg~G-I~eL~~~i~~~~~ 397 (476)
T 3gee_A 343 -AAKFLTVANKLDRAANADALIRAIAD----------------G-TGTEVIGISALNGDG-IDTLKQHMGDLVK 397 (476)
T ss_dssp -TSEEEEEEECTTSCTTTHHHHHHHHH----------------H-HTSCEEECBTTTTBS-HHHHHHHHTHHHH
T ss_pred -CCCEEEEEECcCCCCccchhHHHHHh----------------c-CCCceEEEEECCCCC-HHHHHHHHHHHHh
Confidence 23568899999986543221111111 0 123456789999999 9999999988764
No 25
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=9.3e-15 Score=144.47 Aligned_cols=189 Identities=16% Similarity=0.112 Sum_probs=105.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH-HH------hhhhcCcceeccCCCC---ChH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL-KQ------NATKAKIPFYGSYTES---DPV 169 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL-~~------~~~~~~v~~~~~~~~~---d~~ 169 (411)
+..+|+++|++|+||||++++|+..+...|.+|++++.|++++.....+ .. .....+..+....+.. ...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 4578999999999999999999999998899999999999875421111 00 0000111111111110 111
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHH-HHHhccCCceEEEEe
Q 015221 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-QAFKQSVSVGAVIVT 248 (411)
Q Consensus 170 ~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a-~~f~~~~~~~~vIln 248 (411)
.-..+.+..+...+++++||||||........ ...+|.+++|+|++.+....... .... .+..+|+|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---------~~~aD~vl~Vvd~~~~~~~~~l~~~~~~---~p~ivv~N 202 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSETEV---------ARMVDCFISLQIAGGGDDLQGIKKGLME---VADLIVIN 202 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---------HTTCSEEEEEECC------CCCCHHHHH---HCSEEEEC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHHHH---------HHhCCEEEEEEeCCccHHHHHHHHhhhc---ccCEEEEE
Confidence 11223334444678999999999987543221 24779999999997653210000 1111 13578999
Q ss_pred CCCCCCChhhHHHHHHhcCCCeEEecccccccccc-----cCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-----VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 249 K~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-----~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|+|...... ......... +.+..+. .+.+..++|+..|.| ++.|++.+.+.+
T Consensus 203 K~Dl~~~~~-~~~~~~~l~---------~~l~~~~~~~~~~~~~vi~iSA~~g~g-i~~L~~~l~~~~ 259 (341)
T 2p67_A 203 KDDGDNHTN-VAIARHMYE---------SALHILRRKYDEWQPRVLTCSALEKRG-IDEIWHAIIDFK 259 (341)
T ss_dssp CCCTTCHHH-HHHHHHHHH---------HHHHHSCCSBTTBCCEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred CCCCCChHH-HHHHHHHHH---------HHHHhccccccCCCCcEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 999864311 111110000 0000001 123456789999999 999999988765
No 26
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=142.47 Aligned_cols=188 Identities=18% Similarity=0.163 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-------HHHHHhhhhcCcceecc-------CCC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------DQLKQNATKAKIPFYGS-------YTE 165 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-------~qL~~~~~~~~v~~~~~-------~~~ 165 (411)
...+|+|+|+|||||||++|+|+.++...+.+++++..||+..... .++..++....+.+... ++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3578999999999999999999999988899999999999865321 22222222122211111 122
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEE
Q 015221 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAV 245 (411)
Q Consensus 166 ~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~v 245 (411)
.+. .+++..+...+++++|+||||..+....+ ...+|.+++|+|++.+.+.........+ .+..+
T Consensus 153 r~~----~~~~~~~~~~~~~~iliDT~Gi~~~~~~l---------~~~~d~vl~V~d~~~~~~~~~i~~~il~--~~~iv 217 (349)
T 2www_A 153 RTT----NEAILLCEGAGYDIILIETVGVGQSEFAV---------ADMVDMFVLLLPPAGGDELQGIKRGIIE--MADLV 217 (349)
T ss_dssp TTH----HHHHHHHHHTTCSEEEEECCCC--CHHHH---------HTTCSEEEEEECCC------------CC--SCSEE
T ss_pred HHH----HHHHHhhccCCCCEEEEECCCcchhhhhH---------HhhCCEEEEEEcCCcchhHHHhHHHHHh--cCCEE
Confidence 222 22333344578999999999986443221 2267999999999866432111111111 24688
Q ss_pred EEeCCCCCCChhhH--HHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 246 IVTKMDGHAKGGGA--LSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 246 IlnK~D~~~~~g~~--l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|+||+|.....+.. .... ..... . .........+..++|++.|.| ++.|++.+.+.+
T Consensus 218 VlNK~Dl~~~~~~~~~~~~l~~~l~~-~-------~~~a~~~~~~vi~iSA~~g~G-i~~L~~~I~~~~ 277 (349)
T 2www_A 218 AVTKSDGDLIVPARRIQAEYVSALKL-L-------RKRSQVWKPKVIRISARSGEG-ISEMWDKMKDFQ 277 (349)
T ss_dssp EECCCSGGGHHHHHHHHHHHHHHHTT-C-------C-----CCCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred EEeeecCCCchhHHHHHHHHHHHHHh-c-------CccccCCCceEEEEecCCCCC-HHHHHHHHHHHH
Confidence 89999985432211 1111 10000 0 000001123456699999999 999999998876
No 27
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.56 E-value=5.5e-15 Score=139.45 Aligned_cols=206 Identities=17% Similarity=0.153 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-------------HHHHHHhhhhcCcceecc-CCC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------------FDQLKQNATKAKIPFYGS-YTE 165 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-------------~~qL~~~~~~~~v~~~~~-~~~ 165 (411)
+..+++++|.+||||||++++|+.+++ +|++|++|++|++.... .++........+..+... ...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 457788899999999999999999999 99999999999874321 111100000000000000 000
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHH-------H-HHh
Q 015221 166 SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQA-------Q-AFK 237 (411)
Q Consensus 166 ~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a-------~-~f~ 237 (411)
........+.++.+. .+||++|+||||...... .......+......+.+++|+|++...+..+.. . ...
T Consensus 92 ~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~-~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~ 169 (262)
T 1yrb_A 92 MEKFNEYLNKILRLE-KENDYVLIDTPGQMETFL-FHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR 169 (262)
T ss_dssp HTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHH-HSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhh-hhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence 011122233344433 359999999999853221 100011122222227888999987543322211 1 111
Q ss_pred ccCCceEEEEeCCCCCCChhh--HHHHHHhcCCCeE-Ee------------cccccccccccCCcchhhhhhcCCCCHHH
Q 015221 238 QSVSVGAVIVTKMDGHAKGGG--ALSAVAATKSPVI-FI------------GTGEHMDEFEVFDVKPFVSRLLGMGDWSG 302 (411)
Q Consensus 238 ~~~~~~~vIlnK~D~~~~~g~--~l~~~~~~g~Pi~-fi------------~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~ 302 (411)
... +..+|+||+|....... ......... ++. .+ +..+.+.++....+...+|+..|.| ++.
T Consensus 170 ~~~-p~~iv~NK~D~~~~~~~~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~g-i~~ 246 (262)
T 1yrb_A 170 LGA-TTIPALNKVDLLSEEEKERHRKYFEDID-YLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREG-FED 246 (262)
T ss_dssp HTS-CEEEEECCGGGCCHHHHHHHHHHHHCHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTT-HHH
T ss_pred cCC-CeEEEEecccccccccHHHHHHHHhChH-HHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCccc-HHH
Confidence 122 45789999998643210 011110000 000 00 0000011222223556789999999 999
Q ss_pred HHHHHHhhC
Q 015221 303 FMDKIHEVV 311 (411)
Q Consensus 303 L~e~i~~~~ 311 (411)
|++.+.+.+
T Consensus 247 l~~~i~~~~ 255 (262)
T 1yrb_A 247 LETLAYEHY 255 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887765
No 28
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.54 E-value=9.6e-15 Score=141.99 Aligned_cols=161 Identities=22% Similarity=0.197 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.|||||||++|+|. |.++++++..+ .+++..+.... .
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~------g~~~~ivs~~~-----------~tTr~~i~~i~------------------~ 51 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLL------GVKVAPISPRP-----------QTTRKRLRGIL------------------T 51 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSS-----------CCCCSCEEEEE------------------E
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCceeeecCCC-----------CceeEEEEEEE------------------E
Confidence 4569999999999999999999 88888776522 12222221100 1
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHH--HhcCCCeeEEEeeCcchhhHHH--HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQAAFD--QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~--~~~~~d~vllVvda~~g~~~~~--~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
..++.++|+||||.......+...+.... ....+|.+++|+|++.+....+ ....+.+. -.+..+|+||+|...
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 23578999999998754333333332222 2347899999999986532222 22334432 245788999999865
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.......... .+..|.+..++|+..|.| ++.|++.+.+.+++
T Consensus 132 ~~~~~~~~~~----------------~~~~~~~~~~iSA~~g~g-v~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 132 YPEEAMKAYH----------------ELLPEAEPRMLSALDERQ-VAELKADLLALMPE 173 (301)
T ss_dssp SHHHHHHHHH----------------HTSTTSEEEECCTTCHHH-HHHHHHHHHTTCCB
T ss_pred chHHHHHHHH----------------HhcCcCcEEEEeCCCCCC-HHHHHHHHHHhccc
Confidence 4321222222 112355667799999999 99999999987753
No 29
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.50 E-value=1.1e-15 Score=157.78 Aligned_cols=230 Identities=17% Similarity=0.177 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCCh-hHHHHHHHHHHHHhh
Q 015221 8 GSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNK-RRIIQQAIFNELCKM 86 (411)
Q Consensus 8 ~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~L~~l 86 (411)
.+.+.++++++| .+...++.++..|++.-..++...+|.++ . ++... -...+..+..+|..+
T Consensus 168 ~~~~~a~~~l~g-------~l~~~~~~~r~~l~~~~~~ie~~idf~ee----i------~~~~~~i~~~~~~l~~eL~~l 230 (482)
T 1xzp_A 168 TSLKLSLRNLKG-------GLRDFVDSLRRELIEVLAEIRVELDYPDE----I------ETNTGEVVTRLERIKEKLTEE 230 (482)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTT----C------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcch-------hHhHHHHHHHHHHHHHHHHhhhcCCCCcc----c------cchHHHHHHHHHHHHHHHHHH
Confidence 356788889988 78888899999988876666666666442 0 11100 012235555666666
Q ss_pred cCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCC
Q 015221 87 LDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTES 166 (411)
Q Consensus 87 l~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~ 166 (411)
+.....+...+ .+..|+++|.|||||||++|+|+ +.+..+++.- +.+++.-+..
T Consensus 231 ~~~~~~~~~~r--~~~kV~ivG~pnvGKSSLln~L~------~~~~a~vs~~-----------~gTT~d~~~~------- 284 (482)
T 1xzp_A 231 LKKADAGILLN--RGLRMVIVGKPNVGKSTLLNRLL------NEDRAIVTDI-----------PGTTRDVISE------- 284 (482)
T ss_dssp HHHHHHHHHHH--HCEEEEEECCHHHHTCHHHHHHH------HHTBCCCCCS-----------SCCSSCSCCE-------
T ss_pred HHhhhhhhhcc--CCCEEEEECcCCCcHHHHHHHHH------CCCCCccCCC-----------CCeeeeeEEE-------
Confidence 54221111111 23569999999999999999999 5555555541 1111111110
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCCCCC-cchHHHHHH--HHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhccCC
Q 015221 167 DPVRIAVEGVETFKKENCDLIIVDTSGRH-KQEAALFEE--MRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVS 241 (411)
Q Consensus 167 d~~~i~~~~l~~~~~~~~d~viIDTaG~~-~~~~~l~~e--l~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~ 241 (411)
.+..+++.++|+||||.. ...+..... -........+|.+++|+|++.+.. ..+....+ .. .
T Consensus 285 -----------~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l-~~-~ 351 (482)
T 1xzp_A 285 -----------EIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI-KN-K 351 (482)
T ss_dssp -----------EEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH-TT-S
T ss_pred -----------EEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh-cC-C
Confidence 111236789999999976 432110000 001122336799999999876532 22222222 22 3
Q ss_pred ceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 242 VGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 242 ~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+..+|+||+|+..... ...+... .....+...+|++.|.| ++.|++.+.+.+
T Consensus 352 piivV~NK~DL~~~~~-~~~~~~~----------------~~~~~~~i~iSAktg~G-i~eL~~~l~~~~ 403 (482)
T 1xzp_A 352 RYLVVINKVDVVEKIN-EEEIKNK----------------LGTDRHMVKISALKGEG-LEKLEESIYRET 403 (482)
T ss_dssp SEEEEEEECSSCCCCC-HHHHHHH----------------HTCSTTEEEEEGGGTCC-HHHHHHHHHHHT
T ss_pred CEEEEEECcccccccC-HHHHHHH----------------hcCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 5688999999854311 1111110 00112456789999999 999999998876
No 30
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=8.5e-14 Score=127.77 Aligned_cols=180 Identities=12% Similarity=0.191 Sum_probs=106.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCC---CCChHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT---ESDPVRIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~---~~d~~~i~~~~l~ 177 (411)
..+|+++|.+||||||++++|+..+... +++++++.|+++.-...++.. .+.++..... ..-......+.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYERVRR----FGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHHHHT----TTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHHHHh----CCCcEEEecCCceeecccHHHHHHHH
Confidence 4679999999999999999999887654 789999999976433333332 2222211111 0011111122222
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH-HHHHHhccCCceEEEEeCCCCCCCh
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD-QAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~-~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
...++|++++||+|....... ....++.+++|+|++.+..... ....+. .+..+|+||+|.....
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~---------~~~~~~~~i~vvd~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVD---------FDLGENYRVVMVSVTEGDDVVEKHPEIFR---VADLIVINKVALAEAV 170 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGG---------CCCSCSEEEEEEEGGGCTTHHHHCHHHHH---TCSEEEEECGGGHHHH
T ss_pred --hcCCCCEEEEeCCCCCCCCch---------hccccCcEEEEEeCCCcchhhhhhhhhhh---cCCEEEEecccCCcch
Confidence 345799999999995221110 0124678999999987643222 122222 2368899999974321
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
+....... +.+..+.+..+...+|+..|.| ++.+++.+.+.+.
T Consensus 171 ~~~~~~~~------------~~~~~~~~~~~i~~~Sa~~g~g-i~~l~~~l~~~~~ 213 (221)
T 2wsm_A 171 GADVEKMK------------ADAKLINPRAKIIEMDLKTGKG-FEEWIDFLRGILN 213 (221)
T ss_dssp TCCHHHHH------------HHHHHHCTTSEEEECBTTTTBT-HHHHHHHHHHHHC
T ss_pred hhHHHHHH------------HHHHHhCCCCeEEEeecCCCCC-HHHHHHHHHHHHH
Confidence 11111111 1111122234556789999999 9999999987763
No 31
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.47 E-value=6.5e-14 Score=136.06 Aligned_cols=165 Identities=20% Similarity=0.231 Sum_probs=99.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+..+|+++|+|||||||++++|. |.++.+++..+ .+++..+. +. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~------g~~~~i~s~~~-----------~tTr~~~~--gi----------------~ 51 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLL------GQKISITSRKA-----------QTTRHRIV--GI----------------H 51 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHH------TCSEEECCCCS-----------SCCSSCEE--EE----------------E
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------CCCccccCCCC-----------CcceeeEE--EE----------------E
Confidence 34679999999999999999999 98888776522 12221111 00 0
Q ss_pred hcCCCCEEEEeCCCCC-cchHHHHHHHHHHH-H-hcCCCeeEEEeeCcchh-hHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRH-KQEAALFEEMRQVS-E-ATNPDLVIFVMDSSIGQ-AAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~-~~~~~l~~el~~i~-~-~~~~d~vllVvda~~g~-~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
...++.++++||||.. .....+...+.... . ...+|.+++|+|++.-. .....+..+.....+..+|+||+|....
T Consensus 52 ~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~ 131 (301)
T 1ega_A 52 TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQE 131 (301)
T ss_dssp EETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCC
T ss_pred EECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCcc
Confidence 1235688999999986 33222222221111 1 22568899999986411 1122334444333457889999998652
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
......... .+.+...+.+..++|+..|.| ++.|++.+.+.+++
T Consensus 132 ~~~~~~~l~-------------~l~~~~~~~~~i~iSA~~g~~-v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 132 KADLLPHLQ-------------FLASQMNFLDIVPISAETGLN-VDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHH-------------HHHTTSCCSEEEECCTTTTTT-HHHHHHHHHTTCCB
T ss_pred HHHHHHHHH-------------HHHHhcCcCceEEEECCCCCC-HHHHHHHHHHhCCc
Confidence 112222221 111111234567799999999 99999999988754
No 32
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.47 E-value=2.3e-13 Score=134.36 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=108.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-------HHHHHHhhhhcCcceeccCCCCC---hH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-------FDQLKQNATKAKIPFYGSYTESD---PV 169 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-------~~qL~~~~~~~~v~~~~~~~~~d---~~ 169 (411)
+..+++++|+|||||||+++.|+.++...+.++.+++.|++.... ...+.......++.+........ ..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 457899999999999999999999998888999999999854311 11111111111111111111111 11
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeC
Q 015221 170 RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 170 ~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK 249 (411)
....+++..+...+++++||||||.......+ ...+|.+++|+|+..+.+.........+. +..+++||
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v---------~~~~d~vl~v~d~~~~~~~~~i~~~i~~~--~~ivvlNK 202 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSETAV---------ADLTDFFLVLMLPGAGDELQGIKKGIFEL--ADMIAVNK 202 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---------HTTSSEEEEEECSCC------CCTTHHHH--CSEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchhhH---------HhhCCEEEEEEcCCCcccHHHHHHHHhcc--ccEEEEEc
Confidence 22333444455679999999999998654322 13669999999987543211000001111 24778899
Q ss_pred CCCCCChh---hHHHHHHhcCCCeEEecccccccccc----c-CCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 250 MDGHAKGG---GALSAVAATKSPVIFIGTGEHMDEFE----V-FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 250 ~D~~~~~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~----~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+|...... ........ .+.-+. . +.+..++|++.|.| ++.|++.+.+..
T Consensus 203 ~Dl~~~~~~s~~~~~~l~~------------a~~l~~~~~~~~~~~vl~~Sal~g~g-i~~L~~~I~~~~ 259 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYRA------------ALHILTPPSATWTPPVVTISGLHGKG-LDSLWSRIEDHR 259 (337)
T ss_dssp CSTTCCHHHHHHHHHHHHH------------HHTTBCCSBTTBCCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHH------------HHHhccccccCCCCCEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 99643211 11111110 000011 1 23556799999999 999999998875
No 33
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.41 E-value=4.8e-12 Score=114.57 Aligned_cols=152 Identities=23% Similarity=0.180 Sum_probs=94.7
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
++|+++ +..|+||||++.+||..|+++|++|++|++|++...... +. ....++++..... ......+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~-~~--~~~~~~~~~~~~~-----~~l~~~l~~l~ 73 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNW-SK--AGKAAFDVFTAAS-----EKDVYGIRKDL 73 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH-HT--TSCCSSEEEECCS-----HHHHHTHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHH-Hh--cCCCCCcEEecCc-----HHHHHHHHHhc
Confidence 578888 455999999999999999999999999999987654321 11 2233455544322 33344455554
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-hHHHHHHHHhc------cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQ------SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-~~~~~a~~f~~------~~~~~~vIlnK~D~~ 253 (411)
..||+|||||||..... .. ... ..+|.+++|+.+.... ........+.+ ..++ ++|+|++|..
T Consensus 74 -~~yD~viiD~~~~~~~~--~~----~~l--~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 74 -ADYDFAIVDGAGSLSVI--TS----AAV--MVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp -TTSSEEEEECCSSSSHH--HH----HHH--HHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTT
T ss_pred -CCCCEEEEECCCCCCHH--HH----HHH--HHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCC
Confidence 46999999999987321 11 111 2368899999876432 22223333322 2233 9999999964
Q ss_pred CC-hhhHHHHHHhcCCCeE
Q 015221 254 AK-GGGALSAVAATKSPVI 271 (411)
Q Consensus 254 ~~-~g~~l~~~~~~g~Pi~ 271 (411)
.+ .......+...|.|+.
T Consensus 144 ~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 144 ATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp EEEEHHHHHHHHHHTCCBC
T ss_pred chHHHHHHHHHHHcCCcee
Confidence 43 2334455555666653
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=6.7e-13 Score=135.30 Aligned_cols=157 Identities=21% Similarity=0.316 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.+|+++|+|||||||++|+|+ |.+.++++. ....++.... . .+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~------~~~~~~v~~-----------~~g~T~d~~~--~----------------~~~~ 48 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIA------GERISIVED-----------TPGVTRDRIY--S----------------SAEW 48 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHE------EEECC----------------------CEE--E----------------ECTT
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCceeecC-----------CCCCccceEE--E----------------EEEE
Confidence 469999999999999999999 877776654 2222222111 1 0112
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHH--HhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVS--EATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~--~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
.+..+.|+||||....+..+..+++... ....+|.+++|+|++.+.... ..+..+...-.+..+|+||+|......
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~ 128 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA 128 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh
Confidence 3678899999998643333333443322 223689999999998763322 234444443346788999999854310
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.. .....+ .+.+...+|+..|.| +.+|++.+.+.++
T Consensus 129 ~~-----------------~~~~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 NI-----------------YDFYSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFK 164 (436)
T ss_dssp CC-----------------CSSGGG-SSCCCEECBTTTTBT-HHHHHHHHHHTGG
T ss_pred hH-----------------HHHHHc-CCCCeEEEeCcCCCC-hHHHHHHHHHhcC
Confidence 00 001011 123446689999999 9999999888775
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.39 E-value=1e-12 Score=120.32 Aligned_cols=169 Identities=17% Similarity=0.108 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
....|+++|.+||||||++++|. |.+ +..++..+. .+ ..+.++....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~------~~~~~~~~~~~~~-----------~t-~~~~~~~~~~-------------- 75 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLC------NQKRLAFASKTPG-----------RT-QHINYFSVGP-------------- 75 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHT------TCSSSSCTTCCCC-----------SC-CCEEEEEESC--------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh------CCCcceeecCCCC-----------cc-cceEEEEecC--------------
Confidence 34679999999999999999998 654 444433110 01 1111111110
Q ss_pred HhcCCCCEEEEeCCCCCcc------hHHHHHHHHHHH-HhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeC
Q 015221 179 FKKENCDLIIVDTSGRHKQ------EAALFEEMRQVS-EATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~------~~~l~~el~~i~-~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK 249 (411)
..++.+.|+||||.... ...+...+.... ....+|.+++|+|++.+.. .......+...-.+..+|+||
T Consensus 76 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK 153 (223)
T 4dhe_A 76 --AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTK 153 (223)
T ss_dssp --TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEEC
T ss_pred --CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEec
Confidence 13588999999997432 112222222222 2234678999999986522 223344444433456889999
Q ss_pred CCCCCChhh--HHHHHHhcCCCeEEeccccccccc-----ccCCcchhhhhhcCCCCHHHHHHHHHhhCCCCC
Q 015221 250 MDGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEF-----EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQ 315 (411)
Q Consensus 250 ~D~~~~~g~--~l~~~~~~g~Pi~fi~~Ge~i~~l-----~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~~ 315 (411)
+|....... ...... +.+..+ ....+...+|++.|.| ++.|++.+.+.++...
T Consensus 154 ~Dl~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 154 CDKLTRQESINALRATQ------------KSLDAYRDAGYAGKLTVQLFSALKRTG-LDDAHALIESWLRPAA 213 (223)
T ss_dssp GGGSCHHHHHHHHHHHH------------HHHHHHHHHTCCSCEEEEEEBTTTTBS-HHHHHHHHHHHHC---
T ss_pred cccCChhhHHHHHHHHH------------HHHHhhhhcccCCCCeEEEeecCCCcC-HHHHHHHHHHhcCccC
Confidence 998654211 111111 111111 1234556789999999 9999999999886553
No 36
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.38 E-value=1.4e-11 Score=119.39 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=95.6
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHh---------------------hhhcCc
Q 015221 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKI 157 (411)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~---------------------~~~~~v 157 (411)
++++|+|+|. +|+||||++.+||..+++.|++|++|++|++++.....+... ....++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4578999986 699999999999999999999999999999876654332110 011345
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhH
Q 015221 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (411)
Q Consensus 158 ~~~~~~~-~~d~~~i-----~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~ 229 (411)
.+...+. ..+|.++ ..+.++.++ ..||+||||||+.....+.. .-...+|.+++|+.+... ...
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-------~l~~~ad~vilV~~~~~~~~~~~ 254 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAA-------VVGRSVGTSLLVARFGLNTAKEV 254 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-------HHGGGCSEEEEEEETTTSCTTHH
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHH-------HHHHHCCEEEEEEcCCCChHHHH
Confidence 5444332 2344432 233444443 46999999999986543211 112246889999987543 223
Q ss_pred HHHHHHHhc-cCCceEEEEeCCCCCCC
Q 015221 230 FDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 230 ~~~a~~f~~-~~~~~~vIlnK~D~~~~ 255 (411)
......+.. ..++.++|+|++|....
T Consensus 255 ~~~~~~l~~~~~~~~GvVlN~~~~~~~ 281 (299)
T 3cio_A 255 SLSMQRLEQAGVNIKGAILNGVIKRAS 281 (299)
T ss_dssp HHHHHHHHHTTCCCCCEEEEECCCCCS
T ss_pred HHHHHHHHhCCCCeEEEEEeCCccCCC
Confidence 333344433 34568999999997543
No 37
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.38 E-value=4.7e-12 Score=122.68 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCCcch-----HHHHHHHHH--HHHhcCCCeeEEEeeC-cch---hhHHHHHHHHhccCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQE-----AALFEEMRQ--VSEATNPDLVIFVMDS-SIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~-----~~l~~el~~--i~~~~~~d~vllVvda-~~g---~~~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
+++++|+||||..... ..+...+.. ......+|.+++|+|+ ..+ .+....+..+...-.+..+|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 4789999999986421 011111211 1223378999999997 333 2233455555443345788999999
Q ss_pred CCCChhhHHHHHHhcCCCeEEeccccccccc-ccCCcchhhhhhc---CCCCHHHHHHHHHhhCCCC
Q 015221 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLL---GMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 252 ~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~---g~Gdi~~L~e~i~~~~~~~ 314 (411)
............. +....+ ..|.|....|+.. |.| +..+++.+.+.++..
T Consensus 210 l~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~sa~~~~~~~g-v~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 210 LMDKGTDAMEVLT------------GRVIPLTLGFIGVINRSQEDIIAKKS-IRESLKSEILYFKNH 263 (315)
T ss_dssp SSCSSCCCHHHHT------------TSSSCCTTCEEECCCCCHHHHSSSCC-HHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHh------------CCCccCCCCeEEEecCChhhhccCCC-HHHHHHHHHHHHhCC
Confidence 8655332233332 111111 2345566677777 888 999999998887654
No 38
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.37 E-value=2.6e-11 Score=116.86 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=95.4
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHH------------Hhh---------hhcCc
Q 015221 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK------------QNA---------TKAKI 157 (411)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~------------~~~---------~~~~v 157 (411)
++++|+|+|. +|+||||++.+||..+++.|++|++||+|++++.....+. ... ...++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 4578888865 5999999999999999999999999999998876543321 110 11234
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhH
Q 015221 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAA 229 (411)
Q Consensus 158 ~~~~~~~-~~d~~~i-----~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~ 229 (411)
.+...+. ..+|.++ ....++.++ ..||+||||||+.....+.. .-...+|.+++|+.+... ...
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~-------~l~~~aD~vllVv~~~~~~~~~~ 242 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAA-------IVGRHVGTTLMVARYAVNTLKEV 242 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHH-------HHTTTCSEEEEEEETTTSBHHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHH-------HHHHHCCeEEEEEeCCCCcHHHH
Confidence 4443332 2345443 233444443 46999999999986543211 112246899999998633 222
Q ss_pred HHHHHHHhc-cCCceEEEEeCCCCCCC
Q 015221 230 FDQAQAFKQ-SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 230 ~~~a~~f~~-~~~~~~vIlnK~D~~~~ 255 (411)
......+.. ..++.|+|+|++|....
T Consensus 243 ~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 243 ETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 233344433 24678999999996543
No 39
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.37 E-value=9.7e-12 Score=120.39 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH-----------HHHHHHh--------------hh
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA-----------FDQLKQN--------------AT 153 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a-----------~~qL~~~--------------~~ 153 (411)
.++++|+++|..|+||||++.+||..|+++|++|++||+|++.... .+.+... ..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~ 118 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 118 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccC
Confidence 3568899999999999999999999999999999999999976332 1222110 01
Q ss_pred hcCcceeccCCC-----CC-hH-HHHHHHHHHH-hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc
Q 015221 154 KAKIPFYGSYTE-----SD-PV-RIAVEGVETF-KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (411)
Q Consensus 154 ~~~v~~~~~~~~-----~d-~~-~i~~~~l~~~-~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 225 (411)
..++.+...... .. .. ......++.. ....||+|||||||....... ......+|.+++|+.+..
T Consensus 119 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-------~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 119 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-------AAPLQHADQAVVVTANDF 191 (307)
T ss_dssp GGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-------GGGGGTCSEEEEEECSSH
T ss_pred CCCceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHHH-------HHHHHHCCEEEEEecCcH
Confidence 223444322111 00 11 1111223331 235799999999887543210 012236799999998864
Q ss_pred h--hhHHHHHHHHhc-----cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 226 G--QAAFDQAQAFKQ-----SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 226 g--~~~~~~a~~f~~-----~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
. .........+.+ .+++.++|+|+++.. .....+....|.|+.
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~---~~~~~~~~~~g~~v~ 241 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT---DEVDRFCKETNFRRL 241 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC---HHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH---HHHHHHHHHcCCCce
Confidence 3 222223333332 234568999999853 233445556677764
No 40
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.36 E-value=1.3e-12 Score=133.38 Aligned_cols=157 Identities=19% Similarity=0.234 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.|||||||++|+|+ |.+.++++. .+..++...... +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~------~~~~~~v~~-----------~~g~T~d~~~~~------------------~~~ 46 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLV------KKKKAIVED-----------EEGVTRDPVQDT------------------VEW 46 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHH------C-------------------------CCSEEE------------------EEE
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCCceecC-----------CCCCccceeeEE------------------EEE
Confidence 368999999999999999999 887776665 222222222110 112
Q ss_pred CCCCEEEEeCCCCCcch-HHHHHHHHHH--HHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 182 ENCDLIIVDTSGRHKQE-AALFEEMRQV--SEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~-~~l~~el~~i--~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
.+..+.|+||||..... +.+.+.++.. .....+|.+++|+|++.+.... ..+..+.+.-.+..+|+||+|.....
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~ 126 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF 126 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc
Confidence 35678999999976421 1111222222 2334789999999998653322 23333333334568899999974220
Q ss_pred hhHH-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... ......| +.+...+|+..|.| +.+|++.+.+.+
T Consensus 127 ~~~~~~~~~~lg-----------------~~~~~~iSA~~g~g-v~~L~~~i~~~l 164 (439)
T 1mky_A 127 EREVKPELYSLG-----------------FGEPIPVSAEHNIN-LDTMLETIIKKL 164 (439)
T ss_dssp HHHTHHHHGGGS-----------------SCSCEECBTTTTBS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----------------CCCEEEEeccCCCC-HHHHHHHHHHhc
Confidence 0000 1111111 22335688888888 888888887655
No 41
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.36 E-value=7.9e-12 Score=118.43 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=86.6
Q ss_pred CeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhh---------------hhcCcceeccCC
Q 015221 101 PSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA---------------TKAKIPFYGSYT 164 (411)
Q Consensus 101 ~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~---------------~~~~v~~~~~~~ 164 (411)
+++|+++| ..|+||||++.+||..|+++|++|++||+|++++.....+.... ...++.+.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~ 97 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQF 97 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGG
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccc
Confidence 45788874 55999999999999999999999999999999876543332110 011222222110
Q ss_pred C----------CCh--HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHH
Q 015221 165 E----------SDP--VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (411)
Q Consensus 165 ~----------~d~--~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~ 230 (411)
. ..+ .......+..+....||+|||||||...... . .......+|.+++|+.+... ....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~--~----~~~~~~~aD~viiv~~~~~~s~~~~~ 171 (262)
T 2ph1_A 98 LLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAP--L----TVMQDAKPTGVVVVSTPQELTAVIVE 171 (262)
T ss_dssp GSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHH--H----HHHHHHCCSEEEEEECSSSCCHHHHH
T ss_pred cCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHH--H----HHHhhccCCeEEEEecCccchHHHHH
Confidence 0 001 1122233333223679999999998764321 1 11112256889999887643 2222
Q ss_pred HHHHHHhc-cCCceEEEEeCCCC
Q 015221 231 DQAQAFKQ-SVSVGAVIVTKMDG 252 (411)
Q Consensus 231 ~~a~~f~~-~~~~~~vIlnK~D~ 252 (411)
.....+.+ ..++.++|+|+.|.
T Consensus 172 ~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 172 KAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp HHHHHHHTTTCCEEEEEETTCCE
T ss_pred HHHHHHHhCCCCEEEEEECCCcc
Confidence 23333332 24567899999874
No 42
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.36 E-value=5.1e-12 Score=117.62 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=96.1
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHH-------------HHHHHh-------------
Q 015221 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAF-------------DQLKQN------------- 151 (411)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~-------------~qL~~~------------- 151 (411)
.+++|++++. .|+||||++.+||..|+++ |++|++|++|++++... +-+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 4578888855 5999999999999999998 99999999999843322 222111
Q ss_pred hhhcCcceeccCCCCCh-----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch
Q 015221 152 ATKAKIPFYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (411)
Q Consensus 152 ~~~~~v~~~~~~~~~d~-----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 226 (411)
....++.+......... .+...+.+..+. ..||+||||||+...... ......+|.+++|+.+...
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~--------~~~l~~ad~viiv~~~~~~ 153 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDHVG--------VWVLEHLDELCIVTTPSLQ 153 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTH--------HHHGGGCSEEEEEECSSHH
T ss_pred ecCCCeEEEcCCCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHH--------HHHHHHCCEEEEEecCcHH
Confidence 01234444432221100 122334444443 379999999998764321 1112357999999988643
Q ss_pred --hhHHHHHHHHhc---cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 227 --QAAFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 227 --~~~~~~a~~f~~---~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
.........+.+ .....++|+|+++..... ..-.+....|.|+.
T Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~-~~~~~~~~~~~~v~ 202 (245)
T 3ea0_A 154 SLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI-TSDEIEKVIGRPIS 202 (245)
T ss_dssp HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS-CHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC-CHHHHHHHhCCCeE
Confidence 122223333332 234579999999975432 12234445666654
No 43
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.35 E-value=2.4e-12 Score=123.23 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=93.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++|+|. |.+ ..++..+ + .+ +.... ..+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~------g~~-~~v~~~~---g--------~t---~~~~~---------------~~~~ 46 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLT------GSR-QRVGNWA---G--------VT---VERKE---------------GQFS 46 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH------TTC-EEEEECT---T--------SS---SEEEE---------------EEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------CCC-cccCCCC---C--------ee---EEEEE---------------EEEE
Confidence 3579999999999999999998 765 3343311 0 00 00000 0011
Q ss_pred cCCCCEEEEeCCCCCcch-----HHHHHHH-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQE-----AALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~-----~~l~~el-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
..+..+.|+||||..... ..+.+.+ +.......+|.+++|+|++...........+.+.-.+..+|+||+|...
T Consensus 47 ~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 47 TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 235788999999975432 1111122 1222234789999999998754333333344433345788999999743
Q ss_pred Chh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 255 KGG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 255 ~~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
..+ .........|. |...+|+..|.| ++.|++.+.+.++..
T Consensus 127 ~~~~~~~~~~l~~~lg~------------------~~i~~SA~~g~g-i~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 127 KQNIRIEIDALSARLGC------------------PVIPLVSTRGRG-IEALKLAIDRYKANE 170 (274)
T ss_dssp HTTEEECHHHHHHHHTS------------------CEEECCCGGGHH-HHHHHHHHHTCCCCC
T ss_pred hhhHHHHHHHHHHhcCC------------------CEEEEEcCCCCC-HHHHHHHHHHHHhcC
Confidence 211 11122222333 345567777788 888888887776543
No 44
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.35 E-value=1.8e-11 Score=117.07 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHh---------------------hhhcCc
Q 015221 100 KPSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------------------ATKAKI 157 (411)
Q Consensus 100 ~~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~---------------------~~~~~v 157 (411)
++++|+++|. +|+||||++.+||..+++.|+||++||+|+++|.....+... ....++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 4578999976 699999999999999999999999999999887654322110 001344
Q ss_pred ceeccCC-CCChHHH-----HHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hh-H
Q 015221 158 PFYGSYT-ESDPVRI-----AVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QA-A 229 (411)
Q Consensus 158 ~~~~~~~-~~d~~~i-----~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~-~ 229 (411)
.+...+. ..+|.++ ..+.++.++ ..||+||||||+.....+.. .+.. .+|.+++|+.+... .. .
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~-----~l~~--~aD~vilVv~~~~~~~~~~ 232 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQ-----LFSK--FTGNVVYVVNSENNNKDEV 232 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHH-----HHHH--HHCEEEEEEETTSCCHHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHH-----HHHH--HCCEEEEEEeCCCCcHHHH
Confidence 4444332 2345443 233444443 47999999999976433211 1111 24889999988643 22 2
Q ss_pred HHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 230 FDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 230 ~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
......+.. ..++.|+|+|++|...
T Consensus 233 ~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 233 KKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 223334432 2456799999999643
No 45
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.35 E-value=2.7e-12 Score=130.84 Aligned_cols=187 Identities=16% Similarity=0.216 Sum_probs=106.2
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcC
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~ 156 (411)
..+.+++.+.+...... .....+..|+++|.|||||||++|+|. |.+...++. ...+++..
T Consensus 153 ~~L~~~i~~~l~~~~~~--~~~~~~~ki~lvG~~nvGKSSLin~l~------~~~~~~~~~-----------~~gtT~d~ 213 (436)
T 2hjg_A 153 GDLLDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDA 213 (436)
T ss_dssp HHHHHHHHHTGGGCCSS--CCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEEC--------------------
T ss_pred HHHHHHHHHhcCccccc--cccccCcEEEEEcCCCCCHHHHHHHHh------CCCceeecC-----------CCCceeee
Confidence 45556666666422111 112345789999999999999999999 877776665 22222221
Q ss_pred cceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchH-----HHHHHHHHHHHhcCCCeeEEEeeCcchhhH--
Q 015221 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEA-----ALFEEMRQVSEATNPDLVIFVMDSSIGQAA-- 229 (411)
Q Consensus 157 v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~-----~l~~el~~i~~~~~~d~vllVvda~~g~~~-- 229 (411)
+.. .+...+..+.|+||||...... +.+..++.+.....+|.+++|+|++.+...
T Consensus 214 ~~~------------------~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~ 275 (436)
T 2hjg_A 214 VDT------------------SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD 275 (436)
T ss_dssp CCE------------------EEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred eEE------------------EEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHH
Confidence 110 0112356789999999632111 222233333344467999999999876322
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCChhhHH-HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 230 FDQAQAFKQSVSVGAVIVTKMDGHAKGGGAL-SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 230 ~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l-~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
...+....+.-.+..+|+||+|......... ....... +.+.. ..+.|..++|++.|.| ++.+++.+.
T Consensus 276 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~---------~~l~~-~~~~~~~~~SA~tg~~-v~~l~~~i~ 344 (436)
T 2hjg_A 276 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIR---------DHFQF-LDYAPILFMSALTKKR-IHTLMPAII 344 (436)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHH---------HHCGG-GTTSCEEECCTTTCTT-GGGHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHH---------Hhccc-CCCCCEEEEecccCCC-HHHHHHHHH
Confidence 2233333333345688999999865322111 1110000 11111 1245677899999999 999999888
Q ss_pred hhC
Q 015221 309 EVV 311 (411)
Q Consensus 309 ~~~ 311 (411)
+.+
T Consensus 345 ~~~ 347 (436)
T 2hjg_A 345 KAS 347 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 46
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.35 E-value=2.9e-12 Score=121.52 Aligned_cols=154 Identities=16% Similarity=0.057 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.|+++|.|||||||++|+|. |.+.. ++.- |+ .+ +.... ..+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~------g~~~~-v~~~---pg--------~T---v~~~~---------------~~~~~ 45 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT------NANQR-VGNW---PG--------VT---VEKKT---------------GEFLL 45 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH------TTSEE-EEEC---TT--------SS---SEEEE---------------EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHH------CCCCC-ccCC---CC--------ce---EEEEE---------------EEEEE
Confidence 368999999999999999998 76532 2220 10 00 00000 00112
Q ss_pred CCCCEEEEeCCCCCcchH-----HHHHHH-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEA-----ALFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~-----~l~~el-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
.+..+.|+||||...... ...+.+ +.......+|.+++|+|++...........+.+.-.+..+|+||+|....
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 356889999999864432 111122 12222357899999999987544444444554443467889999997432
Q ss_pred hhh---HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GGG---ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g~---~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.+. ........| .|...+|+..|.| ++.|++.+.+.
T Consensus 126 ~~~~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~ 164 (256)
T 3iby_A 126 RGISIDTEKLESLLG------------------CSVIPIQAHKNIG-IPALQQSLLHC 164 (256)
T ss_dssp TTCEECHHHHHHHHC------------------SCEEECBGGGTBS-HHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHcC------------------CCEEEEECCCCCC-HHHHHHHHHhh
Confidence 211 111222222 2456788889999 99999999887
No 47
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.34 E-value=1.6e-11 Score=115.88 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=93.9
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-------------HHHHHhh--------hhcCcce
Q 015221 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQNA--------TKAKIPF 159 (411)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-------------~qL~~~~--------~~~~v~~ 159 (411)
++|+++ +..|+||||++.+||.+|+++|++|++||+|++.+... +.+.... ...++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~ 82 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKV 82 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEE
Confidence 567776 56699999999999999999999999999999754332 2221100 0123333
Q ss_pred eccCCCCCh-----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHH
Q 015221 160 YGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQ 232 (411)
Q Consensus 160 ~~~~~~~d~-----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~ 232 (411)
.......+. .......+..+. ..||+|||||||..... .. ... ..+|.+++|+.+... ......
T Consensus 83 lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~~----~~~--~~ad~vi~v~~~~~~~~~~~~~~ 153 (263)
T 1hyq_A 83 VPAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS--AV----IAI--AAAQELLLVVNPEISSITDGLKT 153 (263)
T ss_dssp EECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH--HH----HHH--HHSSEEEEEECSSHHHHHHHHHH
T ss_pred EcCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH--HH----HHH--HHCCEEEEEeCCChhHHHHHHHH
Confidence 331111111 122233344443 57999999999876421 11 111 245899999987643 122222
Q ss_pred HHHHhc-cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 233 AQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 233 a~~f~~-~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
...+.+ ...+.++|+|++|..........+....+.|+.
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIEMAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHTTSCEE
T ss_pred HHHHHhcCCCeeEEEEccCCcccccchHHHHHHHhCCCeE
Confidence 223322 235678999999975443223334455676653
No 48
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.34 E-value=1.3e-11 Score=118.32 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCCCcc-----hHH---HHHHHHHHHHhcCCCe-eEEEeeCcchh---hHHHHHHHHhccCCceEEEEeCC
Q 015221 183 NCDLIIVDTSGRHKQ-----EAA---LFEEMRQVSEATNPDL-VIFVMDSSIGQ---AAFDQAQAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 183 ~~d~viIDTaG~~~~-----~~~---l~~el~~i~~~~~~d~-vllVvda~~g~---~~~~~a~~f~~~~~~~~vIlnK~ 250 (411)
.+++.|+||||.... ... ....+. ......++. +++|+|++.+. +....+..+...-.+..+|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDML-MQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHH-HHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHH-HHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcc
Confidence 379999999997531 111 111211 111224554 45799987542 22234444443334578999999
Q ss_pred CCCCChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 251 D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
|............. .....+. .+.+...+|+..|.| ++.+++.+.+
T Consensus 203 Dl~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~SA~~~~g-i~~l~~~l~~ 249 (299)
T 2aka_B 203 DLMDEGTDARDVLE------------NKLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 249 (299)
T ss_dssp GGSCTTCCCHHHHT------------TCSSCCTTCEEECCCCCCBCTTS-CBCHHHHHHH
T ss_pred ccCCCCchHHHHHh------------CCcCcCCCCcEEEECCChhhccc-cccHHHHHHH
Confidence 98654321222221 0011111 234567789999999 8888888765
No 49
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.34 E-value=8.3e-12 Score=111.11 Aligned_cols=160 Identities=20% Similarity=0.213 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...++..+. ....+.++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~~~~------------~t~~~~~~-------------------- 64 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALF------NRKIAFVSKTPG------------KTRSINFY-------------------- 64 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHH------TSCCSCCCSSCC------------CCCCEEEE--------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHH------cCccccccCCCC------------CccCeEEE--------------------
Confidence 4579999999999999999998 665332222100 00111111
Q ss_pred cCCCCEEEEeCCCCCcch-----HHHHHHH-HHHH-HhcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCC
Q 015221 181 KENCDLIIVDTSGRHKQE-----AALFEEM-RQVS-EATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~-----~~l~~el-~~i~-~~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
..+..+.++||||..... ......+ .... ....++.+++|+|++.+.. .......+...-.+..+|+||+|
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 144 (195)
T 3pqc_A 65 LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMD 144 (195)
T ss_dssp EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChh
Confidence 124678999999964221 1111122 1122 2234588999999875522 22223333333345688999999
Q ss_pred CCCChhhH--HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 252 GHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 252 ~~~~~g~~--l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
........ ..... +..... ...+...+|+..|.| ++.+++.+.+.+.
T Consensus 145 l~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 193 (195)
T 3pqc_A 145 KVKMSERAKKLEEHR------------KVFSKY-GEYTIIPTSSVTGEG-ISELLDLISTLLK 193 (195)
T ss_dssp GSCGGGHHHHHHHHH------------HHHHSS-CCSCEEECCTTTCTT-HHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHH------------HHHhhc-CCCceEEEecCCCCC-HHHHHHHHHHHhh
Confidence 86432111 11111 000000 123456689999999 9999999988764
No 50
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.34 E-value=2.5e-11 Score=114.82 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHH------------HHHhh-----------hhcCcc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------------LKQNA-----------TKAKIP 158 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~q------------L~~~~-----------~~~~v~ 158 (411)
++|++.|..|+||||++.+||..|+++|++|++||+|++.+....- +.... ...++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~ 81 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIR 81 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCee
Confidence 5788889999999999999999999999999999999987554321 22110 112333
Q ss_pred eeccCCCCC----h-HHHH--HHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--h
Q 015221 159 FYGSYTESD----P-VRIA--VEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--Q 227 (411)
Q Consensus 159 ~~~~~~~~d----~-~~i~--~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~ 227 (411)
+........ . .+.. ...+..+. ...||+|||||||....+. +... .....+|.+++|+.+... .
T Consensus 82 vl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~----~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 82 CVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMP----IREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp EEECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHH----HHTTSCCEEEEEECSSHHHHH
T ss_pred EEeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhh----hhHhhCCEEEEeecCchhhHH
Confidence 333221110 0 1110 11122222 3469999999998754321 1101 111257899999988643 1
Q ss_pred hH---HHHHHHHhc--cCCceEEEEeCCCCCCChhhHHHHHHhcCCCe
Q 015221 228 AA---FDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPV 270 (411)
Q Consensus 228 ~~---~~~a~~f~~--~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi 270 (411)
.. .+....+.. .+++.++|+|+.+..........+....|.|+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~~~~v 204 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQL 204 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhHHHHHHHHHHcCCcc
Confidence 11 222333322 23456899999975332222223344566665
No 51
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.33 E-value=3.5e-11 Score=111.45 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=94.1
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-------------HHHHHhhh---------hcCcc
Q 015221 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-------------DQLKQNAT---------KAKIP 158 (411)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-------------~qL~~~~~---------~~~v~ 158 (411)
++|+++| ..|+||||++.+||.+|+++|++|++|++|++.+... +.+..... ..++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 5678875 5599999999999999999999999999999754322 22211000 02333
Q ss_pred eeccCCCCCh-----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHH
Q 015221 159 FYGSYTESDP-----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFD 231 (411)
Q Consensus 159 ~~~~~~~~d~-----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~ 231 (411)
+.......+. .....+.++.+. ..||+||||||+..... . ......+|.+++|+++... .....
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~--~------~~~~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQLD--A------MSAMLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSHH--H------HHHHTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEeCCCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCHH--H------HHHHHHCCeEEEEecCCcccHHHHHH
Confidence 3321111001 112233344443 57999999999876422 1 1122356899999988643 12222
Q ss_pred HHHHHhc-cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 232 QAQAFKQ-SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 232 ~a~~f~~-~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
....+.+ ...+.++|+||++..........+....+.|+.
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTCCCHHHHHHHHCSCEE
T ss_pred HHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHhCccce
Confidence 3333332 235679999999975443223344455666653
No 52
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=1.3e-12 Score=134.04 Aligned_cols=158 Identities=21% Similarity=0.299 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..+|+++|.|||||||++|+|+ |.+.++++.. +..++...... ..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~------~~~~~~v~~~-----------~g~t~~~~~~~------------------~~ 67 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIA------GERISIVEDT-----------PGVTRDRIYSS------------------AE 67 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHE------EEEEC----------------------CEEEE------------------CT
T ss_pred CCEEEEECCCCCcHHHHHHHHh------CCCCcccCCC-----------CCcceeEEEEE------------------EE
Confidence 3579999999999999999998 8777766552 11222211110 11
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHH--hcCCCeeEEEeeCcchhh--HHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQA--AFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~--~~~~d~vllVvda~~g~~--~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
..+..+.|+||||....++.+.++++.... ...+|.+++|+|+..+.. ....+..+.+.-.+..+|+||+|.....
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh
Confidence 236788999999976433222333333222 236899999999986532 2234444444444568899999975321
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
... . +. ..+ .+.+...+|+..|.| +.+|++.+.+.++
T Consensus 148 ~~~----~------------e~-~~l-g~~~~~~iSA~~g~g-v~~L~~~i~~~l~ 184 (456)
T 4dcu_A 148 ANI----Y------------DF-YSL-GFGEPYPISGTHGLG-LGDLLDAVAEHFK 184 (456)
T ss_dssp -------C------------CS-GGG-SSSSEEECCTTTCTT-HHHHHHHHHTTGG
T ss_pred hhH----H------------HH-HHc-CCCceEEeecccccc-hHHHHHHHHhhcc
Confidence 000 0 00 011 122335688889998 9999988887763
No 53
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=7.2e-12 Score=128.37 Aligned_cols=185 Identities=17% Similarity=0.237 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcC
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAK 156 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~ 156 (411)
..+.+.+.+.+..... .........|+++|.+||||||++++|. |.+...++. ...+++..
T Consensus 173 ~~L~~~i~~~l~~~~~--~~~~~~~~ki~ivG~~~vGKSslin~l~------~~~~~~~~~-----------~~gtt~~~ 233 (456)
T 4dcu_A 173 GDLLDAVAEHFKNIPE--TKYNEEVIQFCLIGRPNVGKSSLVNAML------GEERVIVSN-----------VAGTTRDA 233 (456)
T ss_dssp HHHHHHHHTTGGGSCS--SCCCTTCEEEEEECSTTSSHHHHHHHHH------TSTTEEECC-----------------CT
T ss_pred HHHHHHHHhhcccccc--cccccccceeEEecCCCCCHHHHHHHHh------CCCccccCC-----------CCCeEEEE
Confidence 4455555555532211 1122345789999999999999999999 877777665 22222221
Q ss_pred cceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--
Q 015221 157 IPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQE-----AALFEEMRQVSEATNPDLVIFVMDSSIGQAA-- 229 (411)
Q Consensus 157 v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~-----~~l~~el~~i~~~~~~d~vllVvda~~g~~~-- 229 (411)
+... +...+..+.|+||||..... .+....++.+.....+|.+++|+|++.+...
T Consensus 234 ~~~~------------------~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~ 295 (456)
T 4dcu_A 234 VDTS------------------FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD 295 (456)
T ss_dssp TSEE------------------EEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH
T ss_pred EEEE------------------EEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH
Confidence 1110 11235678999999953211 1122233333344467999999999875322
Q ss_pred HHHHHHHhccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccc---cccCCcchhhhhhcCCCCHHHHHHH
Q 015221 230 FDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDE---FEVFDVKPFVSRLLGMGDWSGFMDK 306 (411)
Q Consensus 230 ~~~a~~f~~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~---l~~f~p~~~vs~~~g~Gdi~~L~e~ 306 (411)
...+....+.-.+..+|+||+|+............ +.+.. ...+.|..++|++.|.| ++.+++.
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~ 362 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFE------------ENIRDHFQFLDYAPILFMSALTKKR-IHTLMPA 362 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHH------------HHHHHHCGGGTTSCEEECCTTTCTT-GGGHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHH------------HHHHHhcccCCCCCEEEEcCCCCcC-HHHHHHH
Confidence 22333333333456889999998643222111111 11111 11245678899999999 9999999
Q ss_pred HHhhC
Q 015221 307 IHEVV 311 (411)
Q Consensus 307 i~~~~ 311 (411)
+.+.+
T Consensus 363 i~~~~ 367 (456)
T 4dcu_A 363 IIKAS 367 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 54
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.31 E-value=4.8e-11 Score=111.98 Aligned_cols=162 Identities=11% Similarity=0.095 Sum_probs=95.1
Q ss_pred eEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHH--------------H------h----hhhcC
Q 015221 102 SVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLK--------------Q------N----ATKAK 156 (411)
Q Consensus 102 ~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~--------------~------~----~~~~~ 156 (411)
++|+++|.. |+||||++.+||.+|+++|++|++|++|++.+.....+. . . ....+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 578887554 999999999999999999999999999996544322110 0 0 01124
Q ss_pred cceeccCCCCC----hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHH
Q 015221 157 IPFYGSYTESD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (411)
Q Consensus 157 v~~~~~~~~~d----~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~ 230 (411)
+.+.......+ ........+..+....||+||||||+..... .. .....+|.+++|+++... ....
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~--~~------~~l~~ad~vi~v~~~~~~s~~~~~ 154 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--AL------MALYFADEAIITTNPEVSSVRDSD 154 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHH--HH------HHHHTCSEEEEEECSSHHHHHHHH
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHH--HH------HHHHhCCEEEEEecCChhHHHHHH
Confidence 44443222111 1223444555554437999999999865421 11 112257999999998643 1222
Q ss_pred HHHHHHhccC---------CceEEEEeCCCCCCCh-h---hHHHHHHhcCCCeE
Q 015221 231 DQAQAFKQSV---------SVGAVIVTKMDGHAKG-G---GALSAVAATKSPVI 271 (411)
Q Consensus 231 ~~a~~f~~~~---------~~~~vIlnK~D~~~~~-g---~~l~~~~~~g~Pi~ 271 (411)
.....+.... ...++|+|++|..... + ....+....|.|+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 155 RILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp HHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEE
T ss_pred HHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceE
Confidence 2233332211 3569999999853211 1 11334455677764
No 55
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.31 E-value=4.5e-11 Score=114.71 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=92.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHH------------HHHhh-------------hhc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ------------LKQNA-------------TKA 155 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~q------------L~~~~-------------~~~ 155 (411)
.++|++.|..|+||||++.+||.+|+++|++|++||+|++.+..... +.... ...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 81 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYG 81 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGG
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCC
Confidence 36788899999999999999999999999999999999987554321 21110 011
Q ss_pred CcceeccCCCC---Ch--HHH--HHHHHHHHh--cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch
Q 015221 156 KIPFYGSYTES---DP--VRI--AVEGVETFK--KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG 226 (411)
Q Consensus 156 ~v~~~~~~~~~---d~--~~i--~~~~l~~~~--~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g 226 (411)
++.+....... .. ... ....+..+. ...||||||||||....+. +... .....+|.+++|+.+...
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~-~~~~----~~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 82 GVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGG-FAMP----IRENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GCEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTT-TTHH----HHTTCCCEEEEEECSSHH
T ss_pred CeEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccch-hhhh----hhhhhCCEEEEEecCCHH
Confidence 22222221110 00 011 011222222 3479999999998654321 1101 111357899999987643
Q ss_pred --hh---HHHHHHHHhc--cCCceEEEEeCCCCCCChhhHHHHHHhcCCCeE
Q 015221 227 --QA---AFDQAQAFKQ--SVSVGAVIVTKMDGHAKGGGALSAVAATKSPVI 271 (411)
Q Consensus 227 --~~---~~~~a~~f~~--~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~ 271 (411)
.. ..+....+.+ ..++.++|+|+.+..........+....|.|+.
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHHHHHHHHHHHcCcccc
Confidence 11 1222333322 234568999998742221122233345666653
No 56
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.31 E-value=3.2e-11 Score=107.75 Aligned_cols=159 Identities=19% Similarity=0.119 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
....|+++|.+||||||++++|. +.+ ...+... ...+ ..+.++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~~~-----------~~~t-~~~~~~~----------------- 66 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLI------NRKNLARTSSK-----------PGKT-QTLNFYI----------------- 66 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHH------TC-------------------------CCEEEEE-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCccccCCC-----------CCce-eeEEEEE-----------------
Confidence 45679999999999999999998 543 2222210 0000 1111111
Q ss_pred HhcCCCCEEEEeCCCCCcc------hHHHHHHHHHHHH-hcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeC
Q 015221 179 FKKENCDLIIVDTSGRHKQ------EAALFEEMRQVSE-ATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~------~~~l~~el~~i~~-~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK 249 (411)
.+..+.++||||.... ...+......... ....|.+++|+|++.+... ......+.....+..+|+||
T Consensus 67 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK 143 (195)
T 1svi_A 67 ---INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATK 143 (195)
T ss_dssp ---ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---ECCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 1346899999996432 1111111222222 2234889999998765322 22233333333456889999
Q ss_pred CCCCCChhhH--HHHHH-hcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 250 MDGHAKGGGA--LSAVA-ATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 250 ~D~~~~~g~~--l~~~~-~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+|........ ..... ..+ .....+...+|+..|.| ++++++.+.+.+
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~l 193 (195)
T 1svi_A 144 ADKIPKGKWDKHAKVVRQTLN--------------IDPEDELILFSSETKKG-KDEAWGAIKKMI 193 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHT--------------CCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHc--------------ccCCCceEEEEccCCCC-HHHHHHHHHHHh
Confidence 9986542111 11111 011 01123456689999999 999999987765
No 57
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3e-11 Score=128.10 Aligned_cols=209 Identities=15% Similarity=0.196 Sum_probs=100.6
Q ss_pred chhhHHHHHHHHHHHhhcCCcCCHHhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHH
Q 015221 2 VLAQLGGSISRAIQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFN 81 (411)
Q Consensus 2 ~~~~l~~~l~~~~~~l~~~~~~~e~~i~~~l~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 81 (411)
||..|.+.|+ +..+ |++.+++. +|-+..+++ ....++++.+..+.++....+|...+.+.+.+
T Consensus 37 ~~~~~~~~~~----~~~~---~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (611)
T 3izq_1 37 VFPTLKAQLQ----DYQG---WDNLSLKL-------ALFDNNFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVTQ 99 (611)
T ss_dssp CSTTHHHHHH----HHHC---CCSSHHHH-------HHHHTTTCS---SHHHHHHHHTTCSSSCC---------------
T ss_pred HHHHHHHHHH----HhcC---cchhHHHH-------HHHHhhccH---HHHHHHHHHHhccccccCCCChHHHHHHHHHH
Confidence 4555555554 4444 78876554 444555555 45557788888877777777887766666666
Q ss_pred HHHhh--------------cC-----------------------------CCCC-----CCCCCCCCCeEEEEEcCCCCc
Q 015221 82 ELCKM--------------LD-----------------------------PGKP-----SFTPKKGKPSVIMFVGLQGSG 113 (411)
Q Consensus 82 ~L~~l--------------l~-----------------------------~~~~-----~~~~~~~~~~vI~lvG~~GvG 113 (411)
.+.++ ++ .... .......+...|+++|.+|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~k~~lkV~ivG~~n~G 179 (611)
T 3izq_1 100 KLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAG 179 (611)
T ss_dssp -------------------------------------------------------------CCCCCCCCEEEEECCSSSC
T ss_pred HHHhhcccccccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHHhccCCceEEEEEECCCCC
Confidence 66554 00 0000 000112234679999999999
Q ss_pred HHHHHHHHHHHHHHcCCCceEeccCc---------------Ccch-HHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 114 KTTTCTKYAYYHQKKGWKPALVCADT---------------FRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 114 KTTl~~kLa~~l~~~g~kv~lV~~D~---------------~r~~-a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
||||+++|. +....+ ..|. +..+ ..+++.... ..|+.+.... .
T Consensus 180 KSTLin~Ll------~~~~~i-~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~-~~GiTid~~~-------------~ 238 (611)
T 3izq_1 180 KSTLMGRLL------YDLNIV-NQSQLRKLQRESETMGKSSFKFAWIMDQTNEER-ERGVTVSICT-------------S 238 (611)
T ss_dssp HHHHHHHHH------SCSSCS-CCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHH-HTTTCCSCSC-------------C
T ss_pred HHHHHHHHH------HhcCCc-cHHHHHHHHhhhhhccccccceeeeeccchhhh-hCCeeEeeee-------------E
Confidence 999999998 443222 2210 0000 112222111 1122211100 0
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHhc-cCCceEEEE
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIV 247 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~~-~~~~~~vIl 247 (411)
.+...++.+.|+||||..... ..+ ......+|.+++|+|++.|. .....+..... ..+...+|+
T Consensus 239 ~~~~~~~~~~iiDTPG~e~f~----~~~--~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVv 312 (611)
T 3izq_1 239 HFSTHRANFTIVDAPGHRDFV----PNA--IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 312 (611)
T ss_dssp EEECSSCEEEEEECCSSSCHH----HHH--TTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEecCCceEEEEECCCCcccH----HHH--HHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEE
Confidence 112246789999999985321 111 22344789999999998751 22222222222 234467789
Q ss_pred eCCCCCC
Q 015221 248 TKMDGHA 254 (411)
Q Consensus 248 nK~D~~~ 254 (411)
||+|...
T Consensus 313 NKiDl~~ 319 (611)
T 3izq_1 313 NKMDNVD 319 (611)
T ss_dssp ECTTTTT
T ss_pred ecccccc
Confidence 9999865
No 58
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.29 E-value=9.9e-12 Score=107.15 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+.|+++|.+||||||++++|. +.+...+... ...+.. ..... ...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~~-----------~~~~~~-~~~~~-----------------~~~ 46 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL------KKRSAVVADV-----------PGVTRD-LKEGV-----------------VET 46 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HCCC----------------------C-CEEEE-----------------EEE
T ss_pred CEEEEECCCCCCHHHHHHHHh------CCCeeeccCC-----------CCceec-ceEEE-----------------EEe
Confidence 468999999999999999998 5443322220 000000 00000 011
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHH--HHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQV--SEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i--~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
.+..+.++||||...... +...+... .....+|.+++|+|++.+... ......+.....+..+|+||+|......
T Consensus 47 ~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 125 (161)
T 2dyk_A 47 DRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL 125 (161)
T ss_dssp TTEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG
T ss_pred CCceEEEEECCCCCCccc-hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH
Confidence 246789999999865211 11111111 123467999999999864222 1222233322345688999999854310
Q ss_pred hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
. .+....+ .+.+...+|+..|.| ++++++.+.+.++
T Consensus 126 ~-----------------~~~~~~~-~~~~~~~~Sa~~~~g-v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 126 Y-----------------LGPLYGL-GFGDPIPTSSEHARG-LEELLEAIWERLP 161 (161)
T ss_dssp G-----------------CGGGGGG-SSCSCEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred h-----------------HHHHHhC-CCCCeEEEecccCCC-hHHHHHHHHHhCc
Confidence 0 0111111 122456789999999 9999999987753
No 59
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.28 E-value=1.2e-11 Score=118.99 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=85.3
Q ss_pred eEEEEEc---CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhh-----------------------hc
Q 015221 102 SVIMFVG---LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNAT-----------------------KA 155 (411)
Q Consensus 102 ~vI~lvG---~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~-----------------------~~ 155 (411)
++|+|++ ..|+||||++.+||..|+++|++|++||+|++++.+.......+. ..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 114 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTD 114 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSS
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCC
Confidence 4577775 779999999999999999999999999999987643211000000 01
Q ss_pred CcceeccCCCCC-hH------------HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEee
Q 015221 156 KIPFYGSYTESD-PV------------RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMD 222 (411)
Q Consensus 156 ~v~~~~~~~~~d-~~------------~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvd 222 (411)
++.+........ .. ......+..+ ...||+|||||||...... ... +. .+|.+++|+.
T Consensus 115 ~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l-~~~yD~IiiD~pp~~~~~~--~~~---l~---~aD~viiv~~ 185 (298)
T 2oze_A 115 NLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPL-KSDYDLIIIDTVPTPSVYT--NNA---IV---ASDYVMIPLQ 185 (298)
T ss_dssp SEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGG-GGGCSEEEEEECSSCSHHH--HHH---HH---HCSEEEEEEC
T ss_pred CeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHH-hcCCCEEEEECCCCccHHH--HHH---HH---HCCeEEEEec
Confidence 233332111000 00 1122333333 2579999999999764321 111 11 3699999998
Q ss_pred Ccch--h---hHHHHHHH----HhccCCceEEEEeCCCCCC
Q 015221 223 SSIG--Q---AAFDQAQA----FKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 223 a~~g--~---~~~~~a~~----f~~~~~~~~vIlnK~D~~~ 254 (411)
+... . ...+.... ++..+++.++|+|++|...
T Consensus 186 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 186 AEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 7643 1 11222222 2234556799999999754
No 60
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.28 E-value=3.9e-11 Score=113.60 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=87.8
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhh-------------------------
Q 015221 99 GKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA------------------------- 152 (411)
Q Consensus 99 ~~~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~------------------------- 152 (411)
.++++|+++| ..|+||||++.+||..|+ +|++|++||+|++.+....-.....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 4568888875 459999999999999999 9999999999998754422111100
Q ss_pred --hhcCcceeccCCC-----CC----hHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEe
Q 015221 153 --TKAKIPFYGSYTE-----SD----PVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (411)
Q Consensus 153 --~~~~v~~~~~~~~-----~d----~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVv 221 (411)
...++.+...... .. ........+..+ ...||+||||||+..... . ......+|.+++|+
T Consensus 104 ~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~yD~viiD~pp~~~~~--~------~~~l~~aD~vivv~ 174 (267)
T 3k9g_A 104 INVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTL-YYKYDYIVIDTNPSLDVT--L------KNALLCSDYVIIPM 174 (267)
T ss_dssp EEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTT-CTTCSEEEEEECSSCSHH--H------HHHHTTCSEEEEEE
T ss_pred ccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHh-hcCCCEEEEECcCCccHH--H------HHHHHHCCeEEEEe
Confidence 0022222221110 00 122334444444 357999999999876321 1 11223579999999
Q ss_pred eCcch-hh-HHHHHHHHhc---cCCceEEEEeCCCCCCChhhHHHHH
Q 015221 222 DSSIG-QA-AFDQAQAFKQ---SVSVGAVIVTKMDGHAKGGGALSAV 263 (411)
Q Consensus 222 da~~g-~~-~~~~a~~f~~---~~~~~~vIlnK~D~~~~~g~~l~~~ 263 (411)
.+... .. .......+.. ..+ .++|+|+++...........+
T Consensus 175 ~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~~~~~~~~~~~l 220 (267)
T 3k9g_A 175 TAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKKNRTHKTLFEIL 220 (267)
T ss_dssp ESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECTTCSCCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccCcchHHHHHHHH
Confidence 88642 11 2222223322 223 468999995433333333333
No 61
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.27 E-value=1.1e-11 Score=117.73 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|+ |.+.. +.. .| ++.+.... ..+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~------g~~~~-~~~---~p-------------g~tv~~~~-------------~~~~ 48 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT------GTKQY-VAN---WP-------------GVTVEKKE-------------GVFT 48 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------TTCEE-EEE---CT-------------TSCCEEEE-------------EEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC---CC-------------CceEEEEE-------------EEEE
Confidence 3569999999999999999999 76543 222 01 11110000 0011
Q ss_pred cCCCCEEEEeCCCCCcchHH-HHHHH-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChh-
Q 015221 181 KENCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG- 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~-l~~el-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g- 257 (411)
..++.+.|+||||....... ..+.+ +.......+|.+++|+|++...........+.+.-.+..+|+||+|...+.+
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccch
Confidence 23578999999997533210 11111 1222224789999999998765444444444443345788999999743211
Q ss_pred --hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 --GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 --~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
....+....| .|...+|+..|.| +++|++.+.+..
T Consensus 129 ~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~~ 165 (258)
T 3a1s_A 129 KIDRYELQKHLG------------------IPVVFTSSVTGEG-LEELKEKIVEYA 165 (258)
T ss_dssp CBCHHHHHHHHC------------------SCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CCEEEEEeeCCcC-HHHHHHHHHHHh
Confidence 1112222222 2456688899999 999999887754
No 62
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.27 E-value=1.7e-11 Score=116.71 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||++++|+ |.+. .+... ++ ..+..... .+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~------g~~~-~~~~~---~~-----------~t~~~~~~---------------~~~ 46 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT------GLRQ-HVGNW---PG-----------VTVEKKEG---------------IME 46 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH------TTCE-EEEEC---TT-----------SSCEEEEE---------------EEE
T ss_pred eeEEEEECCCCCCHHHHHHHHh------CCCc-ccCCC---CC-----------eEEEeeEE---------------EEE
Confidence 3579999999999999999998 7654 22220 00 00111000 011
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHH--HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccC-CceEEEEeCCCCCCChh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEM--RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSV-SVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el--~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~-~~~~vIlnK~D~~~~~g 257 (411)
..+..+.|+||||..........+. +.......+|.+++|+|++.+.........+.+.. .+..+|+||+|...+.+
T Consensus 47 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 47 YREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp ETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred ECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence 2356789999999754322111111 12222347899999999987654444333333333 45688999999643211
Q ss_pred ---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 ---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
....+....|. |..++|+..|.| ++.+++.+.+..
T Consensus 127 ~~~~~~~l~~~lg~------------------~~~~~Sa~~g~g-i~~l~~~i~~~~ 164 (271)
T 3k53_A 127 AKIDIKKMRKELGV------------------PVIPTNAKKGEG-VEELKRMIALMA 164 (271)
T ss_dssp CCCCHHHHHHHHSS------------------CEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC------------------cEEEEEeCCCCC-HHHHHHHHHHHH
Confidence 11222233333 344678888888 888888887765
No 63
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.26 E-value=6.5e-11 Score=117.42 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+.+++++|.+||||||++++|+ |..+. +...++ .+. ...+. ..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~------~~~~~-~~~~~~-----------~t~-~~~~~-----------------~~ 209 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT------TAKPE-IASYPF-----------TTR-GINVG-----------------QF 209 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC------SSCCE-EECCTT-----------CSS-CEEEE-----------------EE
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCCCCC-----------eee-ceeEE-----------------EE
Confidence 45689999999999999999998 66532 222111 000 01000 00
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHH--HHHHHHH-hcCCCeeEEEeeCcchh--hHH---HHHHHHhcc--CCceEEEEeC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFE--EMRQVSE-ATNPDLVIFVMDSSIGQ--AAF---DQAQAFKQS--VSVGAVIVTK 249 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~--el~~i~~-~~~~d~vllVvda~~g~--~~~---~~a~~f~~~--~~~~~vIlnK 249 (411)
...+.++.++||||.......... +...+.. ...+|.+++|+|++... +.. .....+... -.+..+|+||
T Consensus 210 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 210 EDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp EETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 112467899999998532110000 1111222 23589999999986532 222 222222221 2356789999
Q ss_pred CCCCCChhh--HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 250 MDGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 250 ~D~~~~~g~--~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+|....... ....... ...|...+|+..|.| ++.|++.+.+.+
T Consensus 290 ~Dl~~~~~~~~~~~~~~~------------------~~~~~~~iSA~~g~g-i~~l~~~i~~~l 334 (357)
T 2e87_A 290 IDVADEENIKRLEKFVKE------------------KGLNPIKISALKGTG-IDLVKEEIIKTL 334 (357)
T ss_dssp TTTCCHHHHHHHHHHHHH------------------TTCCCEECBTTTTBT-HHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHh------------------cCCCeEEEeCCCCcC-HHHHHHHHHHHH
Confidence 998754321 1111111 123456789999999 999999998876
No 64
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.26 E-value=2.6e-11 Score=106.19 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|+ |.+.. ++. .|+ .+..... . ....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~------~~~~~-~~~---~~~--------~t~~~~~--~----------------~~~~ 47 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT------GENVY-IGN---WPG--------VTVEKKE--G----------------EFEY 47 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------CCSSS-CC----------------CCCCCE--E----------------EEEE
T ss_pred cEEEEECCCCCCHHHHHHHHh------CCCee-ccC---CCC--------cceeeeE--E----------------EEEE
Confidence 569999999999999999998 64321 110 010 0000000 0 0011
Q ss_pred CCCCEEEEeCCCCCcchH-HHHHHHH-HHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChh--
Q 015221 182 ENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG-- 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~-~l~~el~-~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g-- 257 (411)
.++.+.++||||...... ...+.+. .......++.+++|+|++...........+.+.-.+..+|.||+|......
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 127 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE 127 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh
Confidence 256789999999754321 0111121 112223789999999997643333333333332245688999999632110
Q ss_pred -hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 -~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.........+ .+...+|++.|.| ++++++.+.+.+
T Consensus 128 ~~~~~~~~~~~------------------~~~~~~SA~~~~~-v~~l~~~l~~~~ 163 (165)
T 2wji_A 128 IDVDKLEKILG------------------VKVVPLSAAKKMG-IEELKKAISIAV 163 (165)
T ss_dssp CCHHHHHHHHT------------------SCEEECBGGGTBS-HHHHHHHHHHHT
T ss_pred hHHHHHHHHhC------------------CCEEEEEcCCCCC-HHHHHHHHHHHh
Confidence 1111111111 2345689999999 999999988765
No 65
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.26 E-value=1.8e-11 Score=113.84 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH--------------------HHhh----------
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL--------------------KQNA---------- 152 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL--------------------~~~~---------- 152 (411)
+|+|.|..|+||||++.+||..|+++|++|++||+|++ +.....+ ....
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNP 80 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCC
Confidence 36779999999999999999999999999999999996 4332111 1100
Q ss_pred -----------hhcCcce-eccCC------CCC-hH-HHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhc
Q 015221 153 -----------TKAKIPF-YGSYT------ESD-PV-RIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAT 212 (411)
Q Consensus 153 -----------~~~~v~~-~~~~~------~~d-~~-~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~ 212 (411)
...++.+ ...+. ... +. ....+.+..+....||+||||||+...... .....
T Consensus 81 ~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~--------~~~l~ 152 (254)
T 3kjh_A 81 KVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLT--------RGTAK 152 (254)
T ss_dssp CCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCC--------HHHHT
T ss_pred chhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccCCCCEEEEeCCCcccHHH--------HHHHH
Confidence 0011111 11110 011 11 335566666635689999999988653321 11123
Q ss_pred CCCeeEEEeeCcch-hhHHHHHHHHhcc--CCceEEEEeCCCC
Q 015221 213 NPDLVIFVMDSSIG-QAAFDQAQAFKQS--VSVGAVIVTKMDG 252 (411)
Q Consensus 213 ~~d~vllVvda~~g-~~~~~~a~~f~~~--~~~~~vIlnK~D~ 252 (411)
.+|.+++|+++... .........+.+. ....++|+||.+.
T Consensus 153 ~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 153 AVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred HCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 57999999988643 1122222222221 2346899999984
No 66
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.25 E-value=1e-11 Score=117.12 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. |.++...+..+.. .++.... . ..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~------~~~~~~~~~~~~~----------~t~~~~~--~----------------~~ 66 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSIL------RKQAFESKLGSQT----------LTKTCSK--S----------------QG 66 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH------TSCCSCCCTTSCC----------CCCSCEE--E----------------EE
T ss_pred CceEEEEECCCCCCHHHHHHHHh------CCCCcccCCCCCc----------eeeeeEE--E----------------EE
Confidence 45679999999999999999999 7665544331100 0110000 0 00
Q ss_pred hcCCCCEEEEeCCCCCcch---HHHHHHHHHHH--HhcCCCeeEEEeeCcch-hhHHHHHHHHhcc-----CCceEEEEe
Q 015221 180 KKENCDLIIVDTSGRHKQE---AALFEEMRQVS--EATNPDLVIFVMDSSIG-QAAFDQAQAFKQS-----VSVGAVIVT 248 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~---~~l~~el~~i~--~~~~~d~vllVvda~~g-~~~~~~a~~f~~~-----~~~~~vIln 248 (411)
...++++.|+||||..... .....++.... ....+|.+++|+|++.- .........+.+. ..+..+|+|
T Consensus 67 ~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~ 146 (260)
T 2xtp_A 67 SWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT 146 (260)
T ss_dssp EETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred EeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence 1236789999999975432 22333332222 23478999999999742 1111122222221 234567777
Q ss_pred -CCCCCCChhhHHHHHHhcCCC-eEEecccccccc-cccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 249 -KMDGHAKGGGALSAVAATKSP-VIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 249 -K~D~~~~~g~~l~~~~~~g~P-i~fi~~Ge~i~~-l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
|+|.... ............ +.-+ -+.+.. +..|.+ ..+|+..|.| ++.+++.+.+.+.
T Consensus 147 nK~Dl~~~--~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~-~~~SA~~~~g-v~~l~~~i~~~~~ 207 (260)
T 2xtp_A 147 HKEDLNGG--SLMDYMHDSDNKALSKL--VAACGGRICAFNN-RAEGSNQDDQ-VKELMDCIEDLLM 207 (260)
T ss_dssp CGGGGTTC--CHHHHHHHCCCHHHHHH--HHHTTTCEEECCT-TCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred cccccCCc--cHHHHHHhcchHHHHHH--HHHhCCeEEEecC-cccccccHHH-HHHHHHHHHHHHH
Confidence 9998633 111111100000 0000 011111 112555 6789999999 9999999887763
No 67
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.24 E-value=2.4e-11 Score=107.42 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=89.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||+++.|+ +.+...++.. ++ .++. ++.. ...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~------~~~~~~~~~~---~~--------~t~~---~~~~---------------~~~ 48 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA------GREAAIVTDI---AG--------TTRD---VLRE---------------HIH 48 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TSCCSCCCSS---TT--------CCCS---CEEE---------------EEE
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcceeeCC---CC--------ceec---eeeE---------------EEE
Confidence 3579999999999999999999 6654433321 00 0100 0000 001
Q ss_pred cCCCCEEEEeCCCCCcchHHHHH-HHHH-HHHhcCCCeeEEEeeCcchh--hHHHHHHHHhcc---CCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFE-EMRQ-VSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQS---VSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~-el~~-i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~---~~~~~vIlnK~D~~ 253 (411)
.++..+.++||||.......... .+.. ......+|.+++|+|++... +.......+.+. -.+..+|+||+|+.
T Consensus 49 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 49 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred ECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 12456789999998543211111 1111 12344789999999997542 222222222221 13468899999973
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
... ..+. .. ...+...+|++.|.| ++.+++.+.+.+.
T Consensus 129 ~~~-------------~~~~-------~~-~~~~~~~~SA~~g~g-v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 129 GET-------------LGMS-------EV-NGHALIRLSARTGEG-VDVLRNHLKQSMG 165 (172)
T ss_dssp CCC-------------CEEE-------EE-TTEEEEECCTTTCTT-HHHHHHHHHHHC-
T ss_pred cch-------------hhhh-------hc-cCCceEEEeCCCCCC-HHHHHHHHHHHhh
Confidence 210 0010 00 122446699999999 9999999998874
No 68
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.24 E-value=3.3e-11 Score=115.33 Aligned_cols=156 Identities=16% Similarity=0.093 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.|||||||++++|+ |.+.. ++. + | ++.+.... ..+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~------g~~~~-v~~--~-p-------------g~tv~~~~-------------~~~~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT------GHNQR-VGN--W-P-------------GVTVERKS-------------GLVK 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH------CCCCC-CCS--S-S-------------CCCCSCEE-------------EECT
T ss_pred ceEEEEECCCCCCHHHHHHHHH------CCCCc-ccC--C-C-------------CCcEEEEE-------------EEEe
Confidence 4579999999999999999999 75421 111 0 1 11110000 0011
Q ss_pred cCCCCEEEEeCCCCCcchH-HHHHHHH-HHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChh-
Q 015221 181 KENCDLIIVDTSGRHKQEA-ALFEEMR-QVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG- 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~-~l~~el~-~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g- 257 (411)
. ++.+.++||||...... ...+.+. .......+|.+++|+|++...........+.+.-.+..+|+||+|.....+
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGK 125 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTC
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCc
Confidence 2 57899999999754321 0011121 122223689999999998654333333333333345688999999743211
Q ss_pred --hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 258 --GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 258 --~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
....+....| .|...+|+..|.| ++.+++.+.+.+.
T Consensus 126 ~~~~~~l~~~lg------------------~~vi~~SA~~g~g-i~el~~~i~~~~~ 163 (272)
T 3b1v_A 126 KINVDKLSYHLG------------------VPVVATSALKQTG-VDQVVKKAAHTTT 163 (272)
T ss_dssp CCCHHHHHHHHT------------------SCEEECBTTTTBS-HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHcC------------------CCEEEEEccCCCC-HHHHHHHHHHHHh
Confidence 1111112122 2456688999999 9999999988764
No 69
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.23 E-value=1.6e-10 Score=105.94 Aligned_cols=143 Identities=19% Similarity=0.242 Sum_probs=87.6
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+|+++ +..|+||||++.+||..|+++| +|++||+|+++... ..+.. .++|+..... + .++.+ .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~-~~~~~----~~l~~~vi~~--~-------~l~~l-~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT-GWGKR----GSLPFKVVDE--R-------QAAKY-A 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH-HHHHH----SCCSSEEEEG--G-------GHHHH-G
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH-HHhcC----CCCCcceeCH--H-------HHHHh-h
Confidence 56776 5669999999999999999999 99999999987543 22221 1132210000 0 23333 3
Q ss_pred CCCCEEEEeCCCC-CcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhc--cCCceEEEEeCCCCCC-C
Q 015221 182 ENCDLIIVDTSGR-HKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQ--SVSVGAVIVTKMDGHA-K 255 (411)
Q Consensus 182 ~~~d~viIDTaG~-~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~--~~~~~~vIlnK~D~~~-~ 255 (411)
..||+|||||||. ..... . .....+|.+++|+.+... .........+.+ ..+ .++|+|++|... +
T Consensus 66 ~~yD~viiD~p~~~~~~~~------~--~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~ 136 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDL------E--ALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSK 136 (209)
T ss_dssp GGCSEEEEEEECCCSSSHH------H--HHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSC
T ss_pred hcCCEEEEeCCCCcCcHHH------H--HHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccch
Confidence 5799999999987 43321 1 112256899999988643 122223333333 233 689999999765 3
Q ss_pred h-hhHHHHHHhcCCCe
Q 015221 256 G-GGALSAVAATKSPV 270 (411)
Q Consensus 256 ~-g~~l~~~~~~g~Pi 270 (411)
. ......+...|.|+
T Consensus 137 ~~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 137 DGDEARQLLTTAGLPL 152 (209)
T ss_dssp HHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHcCCch
Confidence 2 23334444456554
No 70
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.23 E-value=1.6e-11 Score=112.75 Aligned_cols=180 Identities=16% Similarity=0.195 Sum_probs=102.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccC----CCCChHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY----TESDPVRIAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~----~~~d~~~i~~~~l 176 (411)
..+|+++|.+||||||++++|+..+... +++.++..|+......+.+... +..+.... ......+ ..+.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~~~~~----~~~~~~~~~~~~~~l~~~~-~~~~~ 111 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAKFDAERMEKH----GAKVVPLNTGKECHLDAHL-VGHAL 111 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTHHHHHHHHTT----TCEEEEEECTTCSSCCHHH-HHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCCccHHHHHhc----CCcEEEecCCceEeccHHH-HHHHH
Confidence 4679999999999999999999887654 7899999998754333333321 22221111 0111111 23333
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH-HHHHHHhccCCceEEEEeCCCCCCC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF-DQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~-~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
..+...++|++++||+|....... -....+..+.|+|+..+.... .....+. .+..+|+||+|....
T Consensus 112 ~~l~~~~~d~~~id~~g~i~~~~s---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 112 EDLNLDEIDLLFIENVGNLICPAD---------FDLGTHKRIVVISTTEGDDTIEKHPGIMK---TADLIVINKIDLADA 179 (226)
T ss_dssp TTSCGGGCSEEEEECCSCSSGGGG---------CCCSCSEEEEEEEGGGCTTTTTTCHHHHT---TCSEEEEECGGGHHH
T ss_pred HHHhcCCCCEEEEeCCCCccCcch---------hhhccCcEEEEEecCcchhhHhhhhhHhh---cCCEEEEeccccCch
Confidence 333345689999999996432110 012345677888865432111 1122222 346899999997432
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... +.+..+.+..+...+|+..|.| ++.+++.+.+.+
T Consensus 180 ~~~~~~~~~------------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 222 (226)
T 2hf9_A 180 VGADIKKME------------NDAKRINPDAEVVLLSLKTMEG-FDKVLEFIEKSV 222 (226)
T ss_dssp HTCCHHHHH------------HHHHHHCTTSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHH------------HHHHHhCCCCeEEEEEecCCCC-HHHHHHHHHHHH
Confidence 111111110 0011112233456689999999 999999887654
No 71
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.23 E-value=3.5e-11 Score=122.66 Aligned_cols=166 Identities=19% Similarity=0.236 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+..++++|+|||||||+++.|+ |....+++.- ++ +++.-.. . .+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~------g~~~~~v~~~---~g--------tT~d~~~--~----------------~i 223 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAIL------NKERALVSPI---PG--------TTRDPVD--D----------------EV 223 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHH------TSTTEEECCC---C--------------CC--E----------------EE
T ss_pred cCceEEEECCCCCCHHHHHHHHh------CCcccccCCC---CC--------CcCCceE--E----------------EE
Confidence 45789999999999999999999 8877777651 11 1111000 0 01
Q ss_pred hcCCCCEEEEeCCCCCcchHH------HHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAA------LFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~------l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D 251 (411)
...+.++.++||||....... ....++.......+|.+++|+|++.+... ..........-.+..+|+||+|
T Consensus 224 ~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 224 FIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp EETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred EECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 123567899999997422110 00011112223357999999999765322 2223333333345688899999
Q ss_pred CCCChhhHHH-HHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 252 GHAKGGGALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 252 ~~~~~g~~l~-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+......... ...... +... ...+.|..++|++.|.| ++.|++.+.+.+
T Consensus 304 l~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~SA~~g~g-v~~l~~~i~~~~ 353 (439)
T 1mky_A 304 LVVHREKRYDEFTKLFR---------EKLY-FIDYSPLIFTSADKGWN-IDRMIDAMNLAY 353 (439)
T ss_dssp GSTTGGGCHHHHHHHHH---------HHCG-GGTTSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHH---------HHhc-cCCCCcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 8654221111 110000 1111 11245667899999999 999999998765
No 72
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.22 E-value=6.3e-11 Score=111.82 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHh---------hh---------hcCccee
Q 015221 100 KPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN---------AT---------KAKIPFY 160 (411)
Q Consensus 100 ~~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~---------~~---------~~~v~~~ 160 (411)
++++|++++ ..|+||||++.+||..|+++|++|++||+|+++..+ ..+... .. ..++.+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~-~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vl 83 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT-SGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLL 83 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-HHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHH-HHhCCCCCCCHHHHHcCCCHHHHccccCCEEEE
Confidence 457888884 559999999999999999999999999999975322 111100 00 1233333
Q ss_pred ccCCCCChHHH----HH--HHHHHHhc-CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-----h
Q 015221 161 GSYTESDPVRI----AV--EGVETFKK-ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----A 228 (411)
Q Consensus 161 ~~~~~~d~~~i----~~--~~l~~~~~-~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-----~ 228 (411)
... ..+... .. ..+..+.. ..||+|||||||..... ... .. ..+|.+++|+.+.... .
T Consensus 84 p~~--~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~~----~l--~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 84 PAT--PDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TLN----AL--AAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp CCC--TTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HHH----HH--HHCSEEEEEEESSTHHHHHHHH
T ss_pred eCC--hhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HHH----HH--HHCCeEEEEecCchHHHHHHHH
Confidence 222 121111 00 22222221 67999999999876422 111 11 2468999999886431 1
Q ss_pred HHHHHHHHh----ccCCceEEEEeCCCCCCC
Q 015221 229 AFDQAQAFK----QSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 229 ~~~~a~~f~----~~~~~~~vIlnK~D~~~~ 255 (411)
..+....+. ...++.++|+|++|....
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~ 184 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDGRTL 184 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCTTCS
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECCCcH
Confidence 122223222 234456899999997544
No 73
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.20 E-value=4.1e-11 Score=112.84 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=87.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+||||||++|.|. |.++...+..+. ..++..... . .
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~------~~~~~~~~~~~~----------~~T~~~~~~-~-----------------~ 65 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSIL------GQRRFFSRLGAT----------SVTRACTTG-S-----------------R 65 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHH------TSCCC-------------------CCSCEEE-E-----------------E
T ss_pred CceEEEEECCCCCcHHHHHHHHh------CCCCccccCCCC----------CccccEEEE-E-----------------E
Confidence 45679999999999999999999 877765543110 011111000 0 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHH----HHHHHHH--HHhcCCCeeEEEeeCcchh-hHHHHHHHHhc----c--CCceEEE
Q 015221 180 KKENCDLIIVDTSGRHKQEAAL----FEEMRQV--SEATNPDLVIFVMDSSIGQ-AAFDQAQAFKQ----S--VSVGAVI 246 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l----~~el~~i--~~~~~~d~vllVvda~~g~-~~~~~a~~f~~----~--~~~~~vI 246 (411)
...+..+.|+||||........ ..++... .....+|.+++|+|++.-. ........+.+ . -.+..++
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv 145 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVF 145 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEE
Confidence 1236789999999986543322 1222211 1224789999999987421 11122222222 1 1345778
Q ss_pred EeCCCCCCCh-hh---------HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 247 VTKMDGHAKG-GG---------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 247 lnK~D~~~~~-g~---------~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.||+|..... .. ........|.++.+ |... ..++..+.| +.+|++++.+.+++
T Consensus 146 ~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~------------~~~~-~~~~~~~~~-v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 146 TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCA------------FDNR-ATGREQEAQ-VEQLLGMVEGLVLE 208 (247)
T ss_dssp ECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEE------------CCTT-CCHHHHHHH-HHHHHHHHHHHHHH
T ss_pred EchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEE------------EeCC-CCccccHHH-HHHHHHHHHHHHHH
Confidence 9999985421 11 11222222322211 1111 123445678 99999998887743
No 74
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.18 E-value=1.3e-10 Score=125.18 Aligned_cols=114 Identities=16% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCcch-----H---HHHHHH-HHHHHhcCCCeeEEEeeCcch---hhHHHHHHHHhccCCceEEEEeCC
Q 015221 183 NCDLIIVDTSGRHKQE-----A---ALFEEM-RQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKM 250 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~-----~---~l~~el-~~i~~~~~~d~vllVvda~~g---~~~~~~a~~f~~~~~~~~vIlnK~ 250 (411)
..+++||||||..... . ....++ .... ...+|.+++|+|++.+ ++....+..+...-.+..+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi-~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHH-TSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHH-hcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCc
Confidence 4579999999987521 1 122222 1111 1367899999999864 233345666655445678999999
Q ss_pred CCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 251 D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
|...++......... +...-...|.+..++|+..|.| ++.|++.+.+
T Consensus 228 Dlv~~~~~~~~il~~-----------~~~~l~lg~~~VV~iSA~~G~G-vdeL~eaI~~ 274 (772)
T 3zvr_A 228 DLMDEGTDARDVLEN-----------KLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 274 (772)
T ss_dssp TSSCTTCCSHHHHTT-----------CSSCCSSCEEECCCCCCEESSS-SEEHHHHHHH
T ss_pred ccCCcchhhHHHHHH-----------HhhhhhccCCceEEeccccccc-chhHHHHHHH
Confidence 997664333322210 1111012355677889999999 8888888876
No 75
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.18 E-value=1.4e-10 Score=107.14 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. +.. + + ..++ .+.+.. .
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~------~~~~~-~~~--~-~--------~~t~-~~~~~~-----------------~ 71 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS------RANVD-VQS--Y-S--------FTTK-NLYVGH-----------------F 71 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHT------TTCEE-EEC--C---------------CEEEEE-----------------E
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCCCc-cCC--C-C--------Ccce-eeeeee-----------------e
Confidence 35779999999999999999998 65543 221 0 0 0000 111000 0
Q ss_pred hcCCCCEEEEeCCCCCcc-----hHHHHHHHHHHHHhcCCCeeEEEeeCcchh-----hHHHHHHHHhcc--CCceEEEE
Q 015221 180 KKENCDLIIVDTSGRHKQ-----EAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQAFKQS--VSVGAVIV 247 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~-----~~~l~~el~~i~~~~~~d~vllVvda~~g~-----~~~~~a~~f~~~--~~~~~vIl 247 (411)
...++.+.|+||||.... .......+... ...+|.+++|+|++... ........+... -.+..+|+
T Consensus 72 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~ 149 (228)
T 2qu8_A 72 DHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF 149 (228)
T ss_dssp EETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred ecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence 012467899999998421 11111122222 23568899999997542 112233444432 23568899
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
||+|.............. .+.+ .....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 150 nK~Dl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 203 (228)
T 2qu8_A 150 NKIDKCNMDSLSIDNKLL----------IKQILDNVKNPIKFSSFSTLTGVG-VEQAKITACELL 203 (228)
T ss_dssp ECGGGCC--CCCHHHHHH----------HHHHHHHCCSCEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred eCcccCCchhhHHHHHHH----------HHHHHHhcCCCceEEEEecccCCC-HHHHHHHHHHHH
Confidence 999985432110000000 0000 0000113456689999999 999999998876
No 76
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.16 E-value=3.8e-10 Score=108.27 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=71.5
Q ss_pred eEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhh-------h--hcCc-ceeccCC--CCCh
Q 015221 102 SVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNA-------T--KAKI-PFYGSYT--ESDP 168 (411)
Q Consensus 102 ~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~-------~--~~~v-~~~~~~~--~~d~ 168 (411)
++|++++ ..|+||||++.+||..|+++|++|++||+|+..+.....+.... . ..++ ++..... ...+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~ 84 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAER 84 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTS
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcCh
Confidence 5788874 55999999999999999999999999999995555443332211 0 1122 2222100 0000
Q ss_pred -----HHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc
Q 015221 169 -----VRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (411)
Q Consensus 169 -----~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 225 (411)
.....+.+..+. ..||+|||||||..... . ......+|.+++|+.+..
T Consensus 85 ~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~--~------~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 85 PEEEQVAGFEAAFARAM-AECDFILIDTPGGDSAI--T------RMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp CHHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHH--H------HHHHHTCSEEEEEEESSH
T ss_pred hhhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHH--H------HHHHHHCCEEEEEEcCCc
Confidence 112334444443 47999999999876321 1 112235699999998863
No 77
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.16 E-value=1.1e-10 Score=121.77 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc-CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~-D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+.|+|+|.+||||||++++|+.+-... .+..-|.. +..+....+.... ....++.+.... ..+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i-~~~g~v~~~~~~~~~~~d~~~~-e~~~GiTi~~~~-------------~~~ 77 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAI-QLAGTIKSRKAARHATSDWMEL-EKQRGISVTTSV-------------MQF 77 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCH-HHHHHHHTC----CCHHHHHHH-HHHHCCSSSSSE-------------EEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCc-ccceeeeccccccceecccchh-hhcCCeeEEEeE-------------EEE
Confidence 4679999999999999999997321100 00000000 0000001111111 111222211100 011
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
...++.+.|+||||........ ......+|.+++|+|++.+... ..........-.+..+|+||+|....
T Consensus 78 ~~~~~~i~liDTPG~~df~~~~------~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 78 PYKDYLINLLDTPGHADFTEDT------YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp EETTEEEEEECCCCSTTCCHHH------HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred EeCCEEEEEEECCCchhHHHHH------HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 2346889999999986543321 1223367999999999876322 22233333332356889999998543
No 78
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.16 E-value=4.7e-10 Score=99.67 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|++||||||++++|. +.....+.. ..+..... .
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~------~~~~~~~~~----------------t~g~~~~~-----------------~ 55 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLA------SEDISHITP----------------TQGFNIKS-----------------V 55 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------CSCCEEEEE----------------ETTEEEEE-----------------E
T ss_pred CceEEEEECCCCCCHHHHHHHHh------cCCCCcccC----------------cCCeEEEE-----------------E
Confidence 35679999999999999999998 654432221 01111000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
..+++.+.++||||....... . ......+|.+++|+|++....... ....+.. ...+..+|.||+|.
T Consensus 56 ~~~~~~l~i~Dt~G~~~~~~~----~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 56 QSQGFKLNVWDIGGQRKIRPY----W--RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp EETTEEEEEEECSSCGGGHHH----H--HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHHHHHH----H--HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 112577899999997543211 1 112236899999999986532222 2222211 12356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
..... ...+....+. ..... ..+...+|+..|.| ++++++.+.+.+.
T Consensus 130 ~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 177 (181)
T 1fzq_A 130 LTAAP-ASEIAEGLNL-----------HTIRDRVWQIQSCSALTGEG-VQDGMNWVCKNVN 177 (181)
T ss_dssp TTCCC-HHHHHHHTTG-----------GGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTC-
T ss_pred ccCCC-HHHHHHHhCc-----------hhccCCceEEEEccCCCCCC-HHHHHHHHHHHHH
Confidence 54321 1122221111 11111 11345689999999 9999999988774
No 79
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.15 E-value=1.2e-10 Score=102.20 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
++..|+++|.+||||||++++|. +.+...- +.++ .+...... ..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~------~~~~~~~----~~~~-------~~~~~~~~-------------------~~ 50 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR------HSKVTEQ----EAGG-------ITQHIGAY-------------------QV 50 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH------TTCSSCS----SCCS-------SSTTCCCC-------------------EE
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------CCccccC----CCCc-------eeEeeeEE-------------------EE
Confidence 35679999999999999999998 5433210 0000 00000000 01
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
...+..+.++||||...... +. ......+|.+++|+|++.+ ....+....+...-.+..+|+||+|......
T Consensus 51 ~~~~~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 51 TVNDKKITFLDTPGHEAFTT-----MR-ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP 124 (178)
T ss_dssp EETTEEEEESCCCSSSSSSC-----SC-CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH
T ss_pred EeCCceEEEEECCCCHHHHH-----HH-HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH
Confidence 12356788999999643221 00 0112357889999998754 2333344444333345688999999865321
Q ss_pred -hHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 -GALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 -~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... ... .......+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 169 (178)
T 2lkc_A 125 DRVMQELMEY----------NLVPEEWGGDTIFCKLSAKTKEG-LDHLLEMILLVS 169 (178)
T ss_dssp HHHHHHHTTT----------TCCBTTTTSSEEEEECCSSSSHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhc----------CcChhHcCCcccEEEEecCCCCC-HHHHHHHHHHhh
Confidence 111111110 001 1111112456699999999 999999987765
No 80
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.14 E-value=6.9e-10 Score=108.30 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=94.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH-----------HHHHHhh--------------h
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF-----------DQLKQNA--------------T 153 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~-----------~qL~~~~--------------~ 153 (411)
...++|++.|.-||||||++.+||..|++.|+||++||+||+..... +...... .
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 125 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 125 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence 35689999999999999999999999999999999999998654332 1111100 0
Q ss_pred hcCcceeccCCCC----ChHHHHHHHHHHH----hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcc
Q 015221 154 KAKIPFYGSYTES----DPVRIAVEGVETF----KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSI 225 (411)
Q Consensus 154 ~~~v~~~~~~~~~----d~~~i~~~~l~~~----~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 225 (411)
..++.+....... .........+..+ ..+.||++++|+||-..... + ......+|.+++|+.+..
T Consensus 126 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~-----~--~~al~aAd~viIvt~~e~ 198 (314)
T 3fwy_A 126 FNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG-----F--AAPLQHADQAVVVTANDF 198 (314)
T ss_dssp GGGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG-----G--GGGGGTCSEEEEEECSSH
T ss_pred CCCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhh-----h--HhHHhhCCeEEEEeCCcH
Confidence 1122222111110 0111111222222 23579999999987643221 0 012335799999988753
Q ss_pred h--hhHHH---HHHHHhccC--CceEEEEeCCCCCCChhhHHHHHHhcCCCeEE
Q 015221 226 G--QAAFD---QAQAFKQSV--SVGAVIVTKMDGHAKGGGALSAVAATKSPVIF 272 (411)
Q Consensus 226 g--~~~~~---~a~~f~~~~--~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~f 272 (411)
- .+..+ .+..+.... ++.++|+|+.+... .........+.|+..
T Consensus 199 ~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~---~v~~~a~~~~~~~lg 249 (314)
T 3fwy_A 199 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD---EVDRFCKETNFRRLA 249 (314)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH---HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh---HHHHHHHHhCCeEEE
Confidence 1 12222 233333322 34689999876532 234455667777653
No 81
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.14 E-value=1.1e-10 Score=103.47 Aligned_cols=159 Identities=18% Similarity=0.113 Sum_probs=90.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+..|+++|++||||||+++.|+ |.+.. ++. .|+ ..+.... . ...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~------~~~~~-~~~---~~~-----------~t~~~~~-~--------------~~~ 50 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT------GENVY-IGN---WPG-----------VTVEKKE-G--------------EFE 50 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TTCEE-EEE---CTT-----------SCCEEEE-E--------------EEE
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCcc-ccC---CCC-----------eeccceE-E--------------EEE
Confidence 4679999999999999999998 64422 111 010 0000000 0 001
Q ss_pred cCCCCEEEEeCCCCCcchHH-HHHHH-HHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCChh-
Q 015221 181 KENCDLIIVDTSGRHKQEAA-LFEEM-RQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGG- 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~-l~~el-~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g- 257 (411)
..++.+.++||||....... ....+ ........++.+++|+|++...........+...-.+..+|.||+|......
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (188)
T 2wjg_A 51 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGI 130 (188)
T ss_dssp ETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC
T ss_pred eCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccc
Confidence 23577899999997543210 00111 1112223579999999987643333333333333345688899999632110
Q ss_pred --hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 258 --GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 258 --~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
.........+ .+...+|+..|.| ++.+++.+.+.+.+.
T Consensus 131 ~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 131 EIDVDKLEKILG------------------VKVVPLSAAKKMG-IEELKKAISIAVKDK 170 (188)
T ss_dssp CCCHHHHHHHHT------------------SCEEECBGGGTBS-HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhC------------------CCeEEEEecCCCC-HHHHHHHHHHHHHhc
Confidence 1111111111 2345688999999 999999998887544
No 82
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.13 E-value=1.9e-10 Score=113.85 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCCcc------hH--HHHHHHHHHHHhcCCCeeEEEeeCcch---hhHHHHHHHHhccCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQ------EA--ALFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~------~~--~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
.++++|+||||.... .. +....+..-......+.+++|+|+..+ ++....+..+...-.+..+|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 478999999997541 11 122222111111234567777887643 2233355555443345789999999
Q ss_pred CCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHh
Q 015221 252 GHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHE 309 (411)
Q Consensus 252 ~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~ 309 (411)
...++......... +...--..|.+...+|+..|.| ++++++.+.+
T Consensus 209 l~~~~~~~~~~~~~-----------~~~~l~~~~~~v~~~SA~~~~~-i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTDARDVLEN-----------KLLPLRRGYIGVVNRSQKDIDG-KKDITAALAA 254 (353)
T ss_dssp GSCTTCCCHHHHTT-----------CSSCCTTCEEECCCCCHHHHHT-TCCHHHHHHH
T ss_pred ccCcchhHHHHHhC-----------CcccccCCceEEEeCCcccccc-cccHHHHHHH
Confidence 86543222232221 1110001244566789999999 8888888765
No 83
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.13 E-value=3.3e-10 Score=121.88 Aligned_cols=84 Identities=7% Similarity=-0.087 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCC
Q 015221 33 NEITRALLQADVQFKLVREMQTNIKKIVNLDDLAAGHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGS 112 (411)
Q Consensus 33 ~~i~~~Ll~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~Gv 112 (411)
.++|..|+++-..++...++.+.... .......+ ...+..+...+..+.. .+..|+++|.+|+
T Consensus 18 ~~~r~~L~~~l~~le~~ld~~e~~~~---~~~~~~~l---~~~l~~L~~~~~~l~~-----------~~~~V~VvG~~na 80 (695)
T 2j69_A 18 AQVRSEMSVCLNKLAETINKAELAGD---SSSGKLSL---ERDIEDITIASKNLQQ-----------GVFRLLVLGDMKR 80 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT---TTTCCCCC---HHHHHHHHHHHHHHHH-----------CCEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc---cchhhhHH---HHHHHHHHHHHHHhcc-----------CCCEEEEECCCCC
Confidence 45777776665556666666542110 00001111 1223445454444422 2467999999999
Q ss_pred cHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 113 GKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 113 GKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
||||++|+|. |.+++.++.+|
T Consensus 81 GKSSLlNaLl------g~~~~~v~~~p 101 (695)
T 2j69_A 81 GKSTFLNALI------GENLLPSDVNP 101 (695)
T ss_dssp CHHHHHHHHH------TSSCSCCCCCT
T ss_pred CHHHHHHHHh------CCCCCCCCCCC
Confidence 9999999999 98888777654
No 84
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.12 E-value=6.6e-10 Score=109.97 Aligned_cols=45 Identities=36% Similarity=0.436 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQ 147 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~q 147 (411)
.++++.|..|+||||++.+||..++++|++|++|++|+ ++...+.
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~ 71 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRDI 71 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHHH
Confidence 45556688899999999999999999999999999999 4444433
No 85
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.12 E-value=1.4e-10 Score=120.86 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+|+||||++++|+.+.........+.+.|+++....+.... ....++.+.... ..+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~-E~~rGiTi~~~~-------------~~~~ 78 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEM-EKQRGISITTSV-------------MQFP 78 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC--------------------------------CCTTE-------------EEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchh-cccCCcceeeeE-------------EEEE
Confidence 46799999999999999999984211111111222222222221111110 011122111000 0112
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
..++.+.|+||||....... .. .....+|.+++|+|++.+... ..........-.+..+++||+|....
T Consensus 79 ~~~~~i~liDTPG~~df~~~----~~--~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSED----TY--RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHH----HH--HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred ECCeEEEEEECCCChhHHHH----HH--HHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 34788999999998643322 11 223467999999999876322 12222222222246889999998654
No 86
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.11 E-value=4.3e-10 Score=112.01 Aligned_cols=186 Identities=22% Similarity=0.174 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCCCCCCCC-CCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhc
Q 015221 77 QAIFNELCKMLDPGKPSFT-PKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKA 155 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~-~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~ 155 (411)
..+..+|..+......... ......++|+++|++||||||++|.|+ |..+ .++. ...+++.
T Consensus 154 ~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~------~~~~-~~~~-----------~~~~T~d 215 (364)
T 2qtf_A 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLT------GLTQ-KVDT-----------KLFTTMS 215 (364)
T ss_dssp HHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHH------CC-----------------------CC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHH------CCCc-cccC-----------CcccccC
Confidence 4455666666543211111 111123469999999999999999999 7653 2222 1111111
Q ss_pred CcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCc-chHHHHHHHHH-HHHhcCCCeeEEEeeCcchh--hH--
Q 015221 156 KIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHK-QEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQ--AA-- 229 (411)
Q Consensus 156 ~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~-~~~~l~~el~~-i~~~~~~d~vllVvda~~g~--~~-- 229 (411)
-.. . .+...+.++.++||||... ....+.+..+. +.....+|.+++|+|++.+. ..
T Consensus 216 ~~~--~----------------~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 216 PKR--Y----------------AIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIET 277 (364)
T ss_dssp SCE--E----------------EEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHH
T ss_pred CEE--E----------------EEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHH
Confidence 000 0 0112356789999999632 12222222222 23345789999999987543 11
Q ss_pred H----HHHHHHhccCCceEEEEeCCCCCCChhhH-HHHHHhcCCCeEEeccccccccc-ccCCcchhhhhhcCCCCHHHH
Q 015221 230 F----DQAQAFKQSVSVGAVIVTKMDGHAKGGGA-LSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGF 303 (411)
Q Consensus 230 ~----~~a~~f~~~~~~~~vIlnK~D~~~~~g~~-l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~g~Gdi~~L 303 (411)
. +....+...-.+..+|.||+|....+-.. ....... ...+ ....+..++|++.|.| ++.|
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l------------~~~l~~~~~~~~~~SA~~g~g-i~~L 344 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKL------------SKELYSPIFDVIPISALKRTN-LELL 344 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHH------------HHHHCSCEEEEEECBTTTTBS-HHHH
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHH------------HHHhcCCCCcEEEEECCCCcC-HHHH
Confidence 1 11222221123468899999986432110 1111000 0011 0001235689999999 9999
Q ss_pred HHHHHhhC
Q 015221 304 MDKIHEVV 311 (411)
Q Consensus 304 ~e~i~~~~ 311 (411)
++.+.+.+
T Consensus 345 ~~~I~~~l 352 (364)
T 2qtf_A 345 RDKIYQLA 352 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988765
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.11 E-value=2.3e-10 Score=101.30 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+..-... ..+..+.. .
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~~~~~----------------t~~~~~~~-----------------~ 60 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFS------MNEVVHTSP----------------TIGSNVEE-----------------I 60 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHH------TTSCEEEEC----------------CSSSSCEE-----------------E
T ss_pred ceeEEEEECCCCCCHHHHHHHHh------cCCCCccCC----------------cCceeeEE-----------------E
Confidence 45779999999999999999999 655422111 00111000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
..+++.+.|+||||....... . ......+|.+++|+|++..... ......+.. .-.+..+|+||+|+
T Consensus 61 ~~~~~~~~i~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 61 VINNTRFLMWDIGGQESLRSS----W--NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp EETTEEEEEEEESSSGGGTCG----G--GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHH----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 113578899999997432110 0 1112367999999999865322 122222221 22356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..... ...+....+ ....... .+...+|+..|.| ++++++.+.+.
T Consensus 135 ~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 180 (181)
T 2h17_A 135 KECMT-VAEISQFLK-----------LTSIKDHQWHIQACCALTGEG-LCQGLEWMMSR 180 (181)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHTC
T ss_pred ccCCC-HHHHHHHhC-----------cccccCCceEEEEccCCCCcC-HHHHHHHHHhh
Confidence 54311 111111111 1111111 1446689999999 99999988654
No 88
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.10 E-value=4.6e-10 Score=98.36 Aligned_cols=155 Identities=21% Similarity=0.103 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. .......++.++......+ .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~------~~~~~---------------~~~~~t~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFA------QETFG---------------KQYKQTIGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------GGGTT---------------HHHHHTTTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHH------hCcCC---------------CCCCCceeEEEEEEEEEeC------------C
Confidence 4679999999999999999998 43210 0000111122111000000 0
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc------cCCceEEEEeCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIVTKMD 251 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~------~~~~~~vIlnK~D 251 (411)
...+.+.++||||........ . .....+|.+++|+|++..... ......+.. ..++..+|.||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKML----D--KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTH----H--HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchh----h--HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 013688999999975322111 0 112367999999999865321 111222221 2333578999999
Q ss_pred CCCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 252 GHAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 252 ~~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
..... ..+.......+ .+...+|+..|.| ++.+++.+.+.+.+
T Consensus 127 l~~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENG------------------FSSHFVSAKTGDS-VFLCFQKVAAEILG 173 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHT------------------CEEEEECTTTCTT-HHHHHHHHHHHHTT
T ss_pred cccccccCHHHHHHHHHHcC------------------CcEEEEeCCCCCC-HHHHHHHHHHHHHh
Confidence 84321 11112222112 2345689999999 99999999877643
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.09 E-value=1.5e-09 Score=93.65 Aligned_cols=152 Identities=18% Similarity=0.098 Sum_probs=86.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||++++|.. .+. .+ +.|. .+..... ....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~------~~~--~~---~~~t-----------~~~~~~~-----------------~~~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL------GEI--VT---TIPT-----------IGFNVET-----------------VEYK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------HCS--SC---CCCC-----------SSCCEEE-----------------EECS
T ss_pred EEEEECCCCCCHHHHHHHHHc------CCc--Cc---ccCc-----------CceeEEE-----------------EEEC
Confidence 489999999999999999972 111 01 1110 0000000 0123
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~~~ 255 (411)
++.+.++||||...... +. ......+|.+++|+|++...... .....+.. .-.+..+|.||+|....
T Consensus 43 ~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRP-----LW-RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp SCEEEEEECCCCGGGHH-----HH-HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CEEEEEEEcCCChhhHH-----HH-HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 67899999999854321 11 11234789999999998653222 22222222 12356889999998543
Q ss_pred hhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.. ...+....+. ..... ..+...+|+..|.| ++++++.+.+.+.
T Consensus 117 ~~-~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 161 (164)
T 1r8s_A 117 MN-AAEITDKLGL-----------HSLRHRNWYIQATCATSGDG-LYEGLDWLSNQLR 161 (164)
T ss_dssp CC-HHHHHHHTTG-----------GGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHC-
T ss_pred CC-HHHHHHHhCc-----------ccccCccEEEEEcccCCCcC-HHHHHHHHHHHHh
Confidence 21 1122221111 11111 12345689999999 9999999988774
No 90
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.09 E-value=1.4e-09 Score=106.48 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAF 145 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~ 145 (411)
.++++.|..|+||||++.+||.+++++|++|++|++|+ ++...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~ 57 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLS 57 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHH
Confidence 55666688999999999999999999999999999999 54433
No 91
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.09 E-value=4.7e-10 Score=97.86 Aligned_cols=153 Identities=13% Similarity=0.054 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... ..+..++..... ..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~------~~~~~~~~~----------------~~~~~~~~~~~~-------------~~ 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFA------GKQERDLHE----------------QLGEDVYERTLT-------------VD 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CC-----CC----------------CSSSSEEEEEEE-------------ET
T ss_pred EEEEEEECCCCccHHHHHHHHh------cCCCccccC----------------ccccceeEEEEE-------------EC
Confidence 4569999999999999999998 544322211 011111110000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc----CCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~----~~~~~vIlnK~D~~ 253 (411)
...+.+.++||||...... ..+. -.....+|.+++|+|.+..... ......+... -.+..+|.||+|..
T Consensus 49 ~~~~~~~~~D~~g~~~~~~---~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDK---SWSQ-ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp TEEEEEEEECCC----------CHHH-HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCCccch---hhhH-HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 1235789999999753211 1111 1122357899999998754321 1122222221 23468899999985
Q ss_pred CChhh----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... ........+ .+...+|+..|.| ++++++.+.+.+
T Consensus 125 ~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~~ 167 (175)
T 2nzj_A 125 RCREVSVEEGRACAVVFD------------------CKFIETSATLQHN-VAELFEGVVRQL 167 (175)
T ss_dssp TTCCSCHHHHHHHHHHHT------------------SEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcC------------------CeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 43111 111111111 2345689999999 999999887765
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=7.9e-10 Score=98.27 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. ...+. .+..... +.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~------~~~~~--~~~~t--------------~~~~~~~-----------------~~ 56 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFS------MNEVV--HTSPT--------------IGSNVEE-----------------IV 56 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------TTSCE--EEECC--------------SCSSCEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCC--cCcCC--------------CccceEE-----------------EE
Confidence 4679999999999999999998 54433 11110 0110000 01
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
.+++.+.|+||||....... .. .....+|.+++|+|++.... .......+.. .-.+..+|+||+|..
T Consensus 57 ~~~~~~~i~Dt~G~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 57 INNTRFLMWDIGGQESLRSS----WN--TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp ETTEEEEEEECCC----CGG----GH--HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHhHHHH----HH--HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 13578899999997432211 01 11236799999999986532 2222222222 223568899999985
Q ss_pred CChhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.... ...+....+. ..+.. ..+...+|+..|.| ++++++.+.+.+..
T Consensus 131 ~~~~-~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 131 ECMT-VAEISQFLKL-----------TSIKDHQWHIQACCALTGEG-LCQGLEWMMSRLKI 178 (187)
T ss_dssp TCCC-HHHHHHHHTG-----------GGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHHCC
T ss_pred CCCC-HHHHHHHhCh-----------hhhcCCCcEEEEccCCCCcC-HHHHHHHHHHHHHH
Confidence 4311 1111111110 00111 11445689999999 99999999887743
No 93
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.09 E-value=5.7e-10 Score=95.86 Aligned_cols=150 Identities=16% Similarity=0.096 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. +.+.. +.+.+. .+..+..... ...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~--------------~~~ 48 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI------QNHFV----DECDPT-----------IEDSYRKQVV--------------IDG 48 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HSSCC----SCCCTT-----------CCEEEEEEEE--------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCcCc----cccCCc-----------cceEEEEEEE--------------ECC
Confidence 458999999999999999998 32211 001000 0000000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HH---HHHHHhc-cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FD---QAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~---~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
..+++.++||||........ . .. ...+|.+++|+|++..... .. ....+.. .-.+..+|+||+|...
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~-~---~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMR-D---QY--MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHH-H---HH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEEEEECCCchhhhHHH-H---Hh--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 24678999999976433211 1 11 1246899999998754321 11 1222221 1234688999999754
Q ss_pred Chh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+.. .........+. +...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~ 163 (166)
T 2ce2_X 123 RTVESRQAQDLARSYGI------------------PYIETSAKTRQG-VEDAFYTLVREI 163 (166)
T ss_dssp CCSCHHHHHHHHHHHTC------------------CEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCC------------------eEEEecCCCCCC-HHHHHHHHHHHH
Confidence 321 11222222222 345578899999 999999887654
No 94
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.08 E-value=3e-10 Score=102.75 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+... . +.+ ..+..+...... ..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~------~~~~~~-~---~~~-----------~~~~~~~~~~~~-------------~~ 65 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFV------EDKFNP-S---FIT-----------TIGIDFKIKTVD-------------IN 65 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HCCCCC-S---SSC-----------CCSCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCc-c---cCC-----------cccceEEEEEEE-------------EC
Confidence 4679999999999999999998 433210 0 000 001111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||....... . ......+|.+++|+|++..... ......+.. .-.+..+|+||+|...
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 66 GKKVKLQLWDTAGQERFRTI----T--TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp TEEEEEEEECCTTGGGGTCC----C--HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred CEEEEEEEEeCCCcHHHHHH----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 11267899999996432210 0 1112367999999999765321 112222221 1235688999999843
Q ss_pred Chh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+.- .........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 180 (213)
T 3cph_A 140 RVVTADQGEALAKELG------------------IPFIESSAKNDDN-VNEIFFTLAKLI 180 (213)
T ss_dssp CCSCHHHHHHHHHHHT------------------CCEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 311 1111222112 1345688899999 999888876654
No 95
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.08 E-value=1.3e-10 Score=103.84 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+||||||++++|. +.+...+...+ ..+..+.. +
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~------~~~~~~~~~~~--------------t~~~~~~~-----------------~ 58 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVK------PAQSSSKHITA--------------TVGYNVET-----------------F 58 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHS------CCC----CCCC--------------CSSEEEEE-----------------E
T ss_pred CCcEEEEECCCCCCHHHHHHHHh------cCCCccccccc--------------ccceeEEE-----------------E
Confidence 45789999999999999999998 65543322111 01111110 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhcc-----------CCceEE
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS-----------VSVGAV 245 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~~-----------~~~~~v 245 (411)
...++.+.|+||||...... +. ......+|.+++|+|++...... .....+... -.+..+
T Consensus 59 ~~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 132 (199)
T 4bas_A 59 EKGRVAFTVFDMGGAKKFRG-----LW-ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLF 132 (199)
T ss_dssp EETTEEEEEEEECCSGGGGG-----GG-GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEE
T ss_pred EeCCEEEEEEECCCCHhHHH-----HH-HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEE
Confidence 12367899999999753221 10 01123689999999998653221 222222111 234688
Q ss_pred EEeCCCCCCChhhHHHHHHhcCCCeEEeccccccccc-c-cCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 246 IVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEF-E-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 246 IlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l-~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|+||+|+..... ...+....+ ...+ . ...+...+|+..|.| ++++++.+.+.+
T Consensus 133 v~NK~Dl~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~ 187 (199)
T 4bas_A 133 FANKMDAAGAKT-AAELVEILD-----------LTTLMGDHPFVIFASNGLKGTG-VHEGFSWLQETA 187 (199)
T ss_dssp EEECTTSTTCCC-HHHHHHHHT-----------HHHHHTTSCEEEEECBTTTTBT-HHHHHHHHHHHH
T ss_pred EEECcCCCCCCC-HHHHHHHhc-----------chhhccCCeeEEEEeeCCCccC-HHHHHHHHHHHH
Confidence 999999865411 111111111 0000 0 112345689999999 999999998765
No 96
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.08 E-value=2.4e-10 Score=99.41 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . +.|. .+..... ..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~------~~~~~--~---~~~t-----------~~~~~~~-----------------~~ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQ------VGEVV--T---TIPT-----------IGFNVET-----------------VT 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSSCC--C---CCCC-----------SSEEEEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCC--C---cCCc-----------CccceEE-----------------EE
Confidence 4679999999999999999997 32211 1 1110 0111000 01
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
..++.+.++||||....... . ......+|.+++|+|++.... .......+.. .-.+..+|+||+|..
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 48 YKNLKFQVWDLGGLTSIRPY----W--RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp ETTEEEEEEEECCCGGGGGG----G--GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred ECCEEEEEEECCCChhhhHH----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 12578899999997532210 0 011236899999999976532 2222222221 123568899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... ...+....+. +.... ...+...+|+..|.| ++++++.+.+.+.
T Consensus 122 ~~~~-~~~~~~~~~~--------~~~~~--~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (171)
T 1upt_A 122 QAMT-SSEMANSLGL--------PALKD--RKWQIFKTSATKGTG-LDEAMEWLVETLK 168 (171)
T ss_dssp TCCC-HHHHHHHHTG--------GGCTT--SCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHhCc--------hhccC--CceEEEECcCCCCcC-HHHHHHHHHHHHh
Confidence 4321 1111111110 00011 011445689999999 9999999887663
No 97
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.08 E-value=4.3e-10 Score=98.82 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+..-. +. ...+..+...... ..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~----~~-----------~~~~~~~~~~~~~-------------~~ 57 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFV------KDQFVEF----QE-----------STIGAAFFSQTLA-------------VN 57 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCTTT----SC-----------CCSCCSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCCCc----CC-----------CCceeEEEEEEEE-------------EC
Confidence 4579999999999999999998 3221100 00 0011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhcc---CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQS---VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~---~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||....... .. .....+|.+++|+|++.... .......+... ..+..+|+||+|...
T Consensus 58 ~~~~~~~i~Dt~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYHSL----AP--MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp TEEEEEEEEECCCSGGGGGG----TH--HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCCChhhhhh----hH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 12467899999996432211 01 11236799999999976532 11222222221 234678899999854
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
... .........+ .+...+|+..|.| ++.+++.+.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 175 (181)
T 2efe_B 132 ARKVTAEDAQTYAQENG------------------LFFMETSAKTATN-VKEIFYEIARRLPR 175 (181)
T ss_dssp TCCSCHHHHHHHHHHTT------------------CEEEECCSSSCTT-HHHHHHHHHHTCC-
T ss_pred cccCCHHHHHHHHHHcC------------------CEEEEEECCCCCC-HHHHHHHHHHHHHh
Confidence 211 1111222111 2345689999999 99999999988743
No 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.08 E-value=5.8e-10 Score=99.46 Aligned_cols=155 Identities=12% Similarity=0.023 Sum_probs=88.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. +.+.+ ..+..+.. +.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~-----------------~~ 63 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA------SGQFN----EDMIP-----------TVGFNMRK-----------------IT 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC----CSCCC-----------CCSEEEEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHH------cCCCC----CccCC-----------CCceeEEE-----------------EE
Confidence 4679999999999999999998 33221 00100 01111110 01
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
..++.+.|+||||..... .... .....+|.+++|+|++...... .....+.. .-.+..+|+||+|..
T Consensus 64 ~~~~~~~l~Dt~G~~~~~----~~~~--~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRFR----SMWE--RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp ETTEEEEEEEECCSHHHH----TTHH--HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred eCCEEEEEEECCCCHhHH----HHHH--HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 236788999999963211 1111 1124679999999997543222 22222221 123468899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... ...+....+. .... ...+...+|+..|.| ++++++.+.+.+.
T Consensus 138 ~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~~~ 184 (188)
T 1zd9_A 138 GALD-EKELIEKMNL-----------SAIQDREICCYSISCKEKDN-IDITLQWLIQHSK 184 (188)
T ss_dssp TCCC-HHHHHHHTTG-----------GGCCSSCEEEEECCTTTCTT-HHHHHHHHHHTCC
T ss_pred cCCC-HHHHHHHhCh-----------hhhccCCeeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 4321 1122221111 0011 112345689999999 9999999998874
No 99
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.07 E-value=2.5e-10 Score=100.14 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|++||||||++++|. +.+.. +.+.+ ..+..+.......+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~~~------------ 53 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYV------NDKYS----QQYKA-----------TIGADFLTKEVTVD------------ 53 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSCCC----TTC--------------CCCSCEEEEECCS------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHH------hCcCC----cccCC-----------ccceEEEEEEEEEc------------
Confidence 34679999999999999999998 32211 00000 01111110000000
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc-------cCCceEEEEeC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-------SVSVGAVIVTK 249 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~-------~~~~~~vIlnK 249 (411)
....+.+.|+||||..... .+ .......+|.+++|+|++..... ......+.. ...+..+|+||
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQ-----SL-GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp SSCCEEEEEECCC----------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred CCcEEEEEEEECCCChHhh-----hh-hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 0124678999999953211 11 01112367999999999865321 111111111 12356889999
Q ss_pred CCCCCChhh-HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 250 MDGHAKGGG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 250 ~D~~~~~g~-~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+|....... ..... +.+.......+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 176 (182)
T 1ky3_A 128 IDAEESKKIVSEKSA-------------QELAKSLGDIPLFLTSAKNAIN-VDTAFEEIARSA 176 (182)
T ss_dssp TTSCGGGCCSCHHHH-------------HHHHHHTTSCCEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred CccccccccCCHHHH-------------HHHHHhcCCCeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 998432110 00000 0000001123446689999999 999999887654
No 100
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.07 E-value=3.8e-10 Score=98.64 Aligned_cols=152 Identities=18% Similarity=0.090 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 60 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFT------EKKFM---A-DCPH-----------TIGVEFGTRIIE-------------VS 60 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---S-SCTT-----------SCCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ccceEEEEEEEE-------------EC
Confidence 4679999999999999999998 43321 0 0000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HH---HHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQ---AQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~---a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||........ . .....+|.+++|+|++...... .. .......-.+..+|+||+|...
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRAVT----R--SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp TEEEEEEEEECTTGGGTCHHH----H--HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEECCCChHhhhhH----H--HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 124678999999964332211 1 1123679999999998653211 11 1222212235688999999843
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .+...+|+..|.| ++++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 176 (179)
T 1z0f_A 135 QRDVTYEEAKQFAEENG------------------LLFLEASAKTGEN-VEDAFLEAAKKI 176 (179)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211 1112222111 2345689999999 999999887654
No 101
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.07 E-value=4.9e-10 Score=96.94 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+..- .+.+ ..+..+..... ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~------~~~~~~----~~~~-----------~~~~~~~~~~~-------------~~~ 51 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFV------KGQFHE----FQES-----------TIGAAFLTQTV-------------CLD 51 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCT----TCCC-----------CSSEEEEEEEE-------------EET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------cCCCCC----CCCC-----------ccceEEEEEEE-------------EEC
Confidence 3569999999999999999998 322110 0000 01111100000 000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
..++.+.++||||....... . ......+|.+++|+|++...... .....+.. ...+..+|.||+|...
T Consensus 52 ~~~~~~~~~D~~G~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 52 DTTVKFEIWDTAGQERYHSL----A--PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp TEEEEEEEEEECCSGGGGGG----H--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHHhhhh----h--HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 12567899999996532211 1 11123679999999998653211 11222221 1224566789999743
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.. ..+.......+ .+...+|+..|.| ++++++.+.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 126 KRAVDFQEAQSYADDNS------------------LLFMETSAKTSMN-VNEIFMAIAKKLPK 169 (170)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHTSCC
T ss_pred ccccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHHhh
Confidence 21 11111111111 2345589999999 99999999887743
No 102
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.07 E-value=3.4e-10 Score=97.86 Aligned_cols=151 Identities=11% Similarity=0.035 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. +.+.. ..+.+. .+..+..... ...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~~ 48 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFV------QGIFV----EKYDPT-----------IEDSYRKQVE--------------VDC 48 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HCCCC----CSCCCC-----------SEEEEEEEEE--------------SSS
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCCC-----------ccceEEEEEE--------------ECC
Confidence 469999999999999999998 32210 001110 0000000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
..+.+.++||||......... .. ...+|.+++|+|++... ........+.. .-.+..+|+||+|...
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRD----LY--MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHH----HH--HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred EEEEEEEEECCChHHHHHHHH----HH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 246789999999754332111 11 12469999999987542 11112222211 1234688999999843
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ......... ...+...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (167)
T 1c1y_A 123 ERVVGKEQGQNLARQW-----------------CNCAFLESSAKSKIN-VNEIFYDLVRQI 165 (167)
T ss_dssp GCCSCHHHHHHHHHHT-----------------TSCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHc-----------------cCCcEEEecCCCCCC-HHHHHHHHHHHH
Confidence 211 111111110 123456689999999 999999887654
No 103
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.07 E-value=3e-10 Score=101.28 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+....... + ..+.... ..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~~---~-----------t~~~~~~-----------------~~ 62 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLK------PSNAQSQNIL---P-----------TIGFSIE-----------------KF 62 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTS------CGGGCCSSCC---C-----------CSSEEEE-----------------EE
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCCCCCcC---C-----------ccceeEE-----------------EE
Confidence 45679999999999999999998 5442111110 0 0011100 01
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc------cCCceEEEEeCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVTKM 250 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~------~~~~~~vIlnK~ 250 (411)
..+++.+.|+||||....... . ......+|.+++|+|++...... .....+.. .-.+..+|+||+
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 63 KSSSLSFTVFDMSGQGRYRNL----W--EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp ECSSCEEEEEEECCSTTTGGG----G--GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred EECCEEEEEEECCCCHHHHHH----H--HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 123578999999996533211 0 01123679999999998653221 22222221 123468899999
Q ss_pred CCCCChhhHHHHHHhcCCCeEEeccccccccccc-CCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEV-FDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 251 D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~-f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|...... ........+ ...+.. ..+...+|+..|.| ++++++.+.+.+
T Consensus 137 Dl~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 185 (190)
T 2h57_A 137 DLRDAVT-SVKVSQLLC-----------LENIKDKPWHICASDAIKGEG-LQEGVDWLQDQI 185 (190)
T ss_dssp TSTTCCC-HHHHHHHHT-----------GGGCCSSCEEEEECBTTTTBT-HHHHHHHHHHHC
T ss_pred CcccCCC-HHHHHHHhC-----------hhhccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 9854321 111111110 011111 12445689999999 999999998877
No 104
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.06 E-value=5e-10 Score=97.10 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. +.+.. +.+.+. .+..+..... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~~ 48 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV------KGTFR----ESYIPT-----------VEDTYRQVIS--------------CDK 48 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------TCCCC----SSCCCC-----------SCEEEEEEEE--------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCC----CCCCCC-----------ccccEEEEEE--------------ECC
Confidence 569999999999999999998 53221 000000 0000000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---H---HHHHHHhc--cCCceEEEEeCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---F---DQAQAFKQ--SVSVGAVIVTKMDGH 253 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~---~~a~~f~~--~~~~~~vIlnK~D~~ 253 (411)
..+.+.++||||......... . ....+|.+++|+|++..... . ........ ...+..+|+||+|..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~----~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQR----L--SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHH----H--HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHHH----H--hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 246789999999765432111 1 11246999999999754211 1 11222221 123468899999974
Q ss_pred CChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 254 ~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.... .........+ .+...+|+..|.| ++++++.+.+.+..
T Consensus 123 ~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~~~ 167 (172)
T 2erx_A 123 PSREVQSSEAEALARTWK------------------CAFMETSAKLNHN-VKELFQELLNLEKR 167 (172)
T ss_dssp GGCCSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-HHHHHHHHHHTCCS
T ss_pred cccccCHHHHHHHHHHhC------------------CeEEEecCCCCcC-HHHHHHHHHHHHhh
Confidence 3211 1111111111 2345689999999 99999999988754
No 105
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.06 E-value=4.4e-10 Score=97.33 Aligned_cols=149 Identities=10% Similarity=0.037 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. |.+...... ....+.. ..+ . ...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~~~~~-~~~-~-----------------~~~ 46 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG------GVEDGPEAE-----------AAGHTYD-RSI-V-----------------VDG 46 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC------CC---------------------CEEE-EEE-E-----------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHc------CccccCCCC-----------ccccceE-EEE-E-----------------ECC
Confidence 458999999999999999997 654432222 0001100 000 0 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhcc----CCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS----VSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~~----~~~~~vIlnK~D~~~ 254 (411)
..+.+.++||||...... +.. .....+|.+++|+|.+...... .....+... -.+..+|.||+|...
T Consensus 47 ~~~~~~i~D~~g~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRW-----LPG-HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEEEEECC---------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEEEEECCCCccchh-----hhh-hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 246788999999653211 110 1123678999999987543211 122222211 134688999999854
Q ss_pred ChhhH----HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGA----LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~----l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... .......+ .+...+|+..|.| ++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 162 (166)
T 3q72_A 121 SREVSVDEGRACAVVFD------------------CKFIETSAALHHN-VQALFEGVVRQI 162 (166)
T ss_dssp SCCSCHHHHHHHHHHTT------------------CEEEECBGGGTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhC------------------CcEEEeccCCCCC-HHHHHHHHHHHH
Confidence 32111 11111111 2445689999999 999999887654
No 106
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.06 E-value=1.5e-09 Score=97.46 Aligned_cols=155 Identities=20% Similarity=0.112 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. .. .|. .+..... .
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~------~~~~~--~~---~~t-----------~~~~~~~-----------------~ 68 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IPT-----------IGFNVET-----------------V 68 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC------SSCCE--EE---EEE-----------TTEEEEE-----------------E
T ss_pred CccEEEEECCCCCCHHHHHHHHH------hCCcc--cc---CCc-----------CceeEEE-----------------E
Confidence 45779999999999999999997 43321 11 110 0110000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
...++.+.|+||||....... .. .....+|.+++|+|++...... .....+.. .-.+..+|+||+|.
T Consensus 69 ~~~~~~~~i~Dt~G~~~~~~~----~~--~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 69 EYKNICFTVWDVGGQDKIRPL----WR--HYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp EETTEEEEEEECC-----CTT----HH--HHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHH----HH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 113578899999997432111 11 1123679999999998653222 22222221 12356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... ....+....+. .... ...+...+|+..|.| ++++++.+.+.+.
T Consensus 143 ~~~~-~~~~i~~~~~~-----------~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i~ 190 (192)
T 2b6h_A 143 PNAM-PVSELTDKLGL-----------QHLRSRTWYVQATCATQGTG-LYDGLDWLSHELS 190 (192)
T ss_dssp TTCC-CHHHHHHHTTG-----------GGCSSCCEEEEECBTTTTBT-HHHHHHHHHHHTT
T ss_pred CCCC-CHHHHHHHhCc-----------ccccCCceEEEECcCCCcCC-HHHHHHHHHHHHh
Confidence 5431 11122222111 1011 112345689999999 9999999988763
No 107
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.06 E-value=2e-10 Score=100.62 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... + ..+..+...... ..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~------~~~~~~~~~----~-----------~~~~~~~~~~~~-------------~~ 54 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFA------DNTFSGSYI----T-----------TIGVDFKIRTVE-------------IN 54 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHC------SCC---CCT----T-----------TBSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCCccC----C-----------CceeEEEEEEEE-------------EC
Confidence 4679999999999999999998 543321110 0 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhccC--CceEEEEeCCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQSV--SVGAVIVTKMDGHAK 255 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~~--~~~~vIlnK~D~~~~ 255 (411)
...+.+.|+||||...... + .......+|.+++|+|++.+..... ....+.... .+..+|+||+|....
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRT-----I-TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp TEEEEEEEEEETTGGGCSS-----C-CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred CEEEEEEEEcCCCchhhhh-----h-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 1136789999999532211 0 0011236799999999986532222 222232222 346889999997532
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ..........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 169 (181)
T 3tw8_B 129 KVVETEDAYKFAGQMG------------------IQLFETSAKENVN-VEEMFNCITELV 169 (181)
T ss_dssp CCSCHHHHHHHHHHHT------------------CCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 1 11122222222 2345689999999 999999988776
No 108
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.06 E-value=5.3e-10 Score=99.63 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.... +.+ ..+..+...... ..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~----~~~-----------~~~~~~~~~~~~-------------~~ 61 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFA------DDTYTES----YIS-----------TIGVDFKIRTIE-------------LD 61 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCSC----CCC-----------CSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCCCC----CCC-----------cccceEEEEEEE-------------EC
Confidence 4679999999999999999998 3221100 000 001111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHh---ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK---QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~---~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||........ ......+|.+++|+|++.... .......+. ..-.+..+|+||+|...
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTIT------SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTH------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEECCCcHhhhhhH------HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 113678999999964322111 111236799999999986432 111222222 21235688999999854
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+. +...+|+..|.| ++++++.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-v~~l~~~l~~~i 177 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSLGI------------------PFLETSAKNATN-VEQSFMTMAAEI 177 (196)
T ss_dssp TCCSCHHHHHHHHHHTTC------------------CEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------cEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 321 11222222222 345578999999 998888877655
No 109
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.06 E-value=4.6e-10 Score=101.40 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+..|+++|++||||||++++|. +.+...... ..+... ....
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~------~~~~~~~~~----------------t~~~~~-----------------~~~~ 65 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK------DDRLGQHVP----------------TLHPTS-----------------EELT 65 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS------CC------C----------------CCCCSC-----------------EEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHh------cCCCCccCC----------------CCCcee-----------------EEEE
Confidence 4569999999999999999998 544321110 000000 0011
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
.+++++.++||||...... +. ......+|.+++|+|++...... .....+.. .-.+..+|.||+|..
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 66 IAGMTFTTFDLGGHIQARR-----VW-KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp ETTEEEEEEEECC----CC-----GG-GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred ECCEEEEEEECCCcHhhHH-----HH-HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 2357889999999642111 10 01123679999999998653222 22222221 123468899999985
Q ss_pred CChhhHHHHHHhcCCCeEEeccccc---cccc-ccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEH---MDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~---i~~l-~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .........+..- ...++. +.+. ....+...+|++.|.| ++++++.+.+.+
T Consensus 140 ~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g-v~~l~~~l~~~l 197 (198)
T 1f6b_A 140 EAI-SEERLREMFGLYG--QTTGKGSVSLKELNARPLEVFMCSVLKRQG-YGEGFRWMAQYI 197 (198)
T ss_dssp TCC-CHHHHHHHHTCTT--TCCCSSCCCTTTCCSCCEEEEECBTTTTBS-HHHHHHHHHTTC
T ss_pred ccC-CHHHHHHHhCccc--ccccccccccccccCceEEEEEEECCCCCC-HHHHHHHHHHhc
Confidence 421 1111122112110 111111 1110 0122445689999999 999999987764
No 110
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.05 E-value=1.8e-08 Score=92.37 Aligned_cols=165 Identities=13% Similarity=0.209 Sum_probs=87.7
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEeccCcCc---------chHHHHHHHhhhhc----Cc-ceeccCCCC
Q 015221 102 SVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVCADTFR---------AGAFDQLKQNATKA----KI-PFYGSYTES 166 (411)
Q Consensus 102 ~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r---------~~a~~qL~~~~~~~----~v-~~~~~~~~~ 166 (411)
++|+++|. +|+||||++.+||..|+++|+||++++..... .+..+.+....... +. ++... ...
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFA-EPT 80 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEES-SCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeC-CCC
Confidence 56888875 69999999999999999999999997532111 11222232222110 00 11110 011
Q ss_pred C------------hHHHHHHHHHHHhcCCCCEEEEeCCCCCcch--HHHHHHHHHHHHhcCCCeeEEEeeCcch--hhHH
Q 015221 167 D------------PVRIAVEGVETFKKENCDLIIVDTSGRHKQE--AALFEEMRQVSEATNPDLVIFVMDSSIG--QAAF 230 (411)
Q Consensus 167 d------------~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~--~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~ 230 (411)
. ......+.++.+. ++||+|||||||..... ..+ ....+.... .+.+++|+++..+ .+..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~--~~~~l~~~~-~~~vi~v~~~~~~~~~~~~ 156 (224)
T 1byi_A 81 SPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTF--TFADWVTQE-QLPVILVVGVKLGCINHAM 156 (224)
T ss_dssp CHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTE--EHHHHHHHH-TCCEEEEEECSTTHHHHHH
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcch--hHHHHHHHh-CCCEEEEecCCCCcHHHHH
Confidence 1 1223344455543 57999999999765311 000 001111111 1347788877543 2223
Q ss_pred HHHHHHh-ccCCceEEEEeCCCCCCCh-hhHHH-HHHhcCCCeE
Q 015221 231 DQAQAFK-QSVSVGAVIVTKMDGHAKG-GGALS-AVAATKSPVI 271 (411)
Q Consensus 231 ~~a~~f~-~~~~~~~vIlnK~D~~~~~-g~~l~-~~~~~g~Pi~ 271 (411)
...+.+. ...++.|+|+|++|..... ..... +....+.|+.
T Consensus 157 ~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 157 LTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLL 200 (224)
T ss_dssp HHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCCEE
Confidence 3333332 3456789999999975332 23333 3344677764
No 111
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.05 E-value=2.8e-10 Score=98.12 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+.+. .+..+..... ..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~------~~~~~---~-~~~~t-----------~~~~~~~~~~--------------~~ 48 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFM------YDEFV---E-DYEPT-----------KADSYRKKVV--------------LD 48 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---S-CCCTT-----------CCEEEEEEEE--------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCccC---C-CCCCC-----------cceEEEEEEE--------------EC
Confidence 3569999999999999999998 43311 0 11110 0011000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---H---HHHHHhc-cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---D---QAQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~---~a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
...+.+.++||||...... + .... ...+|.+++|+|++...... . ....... .-.+..+|+||+|..
T Consensus 49 ~~~~~~~l~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 49 GEEVQIDILDTAGQEDYAA-I---RDNY--FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp TEEEEEEEEECCC---CHH-H---HHHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCcchhHH-H---HHHH--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 1246789999999653322 1 1111 12569999999998543211 1 1122221 123568899999974
Q ss_pred CChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .+.......+ .+...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 165 (168)
T 1u8z_A 123 DKRQVSVEEAKNRADQWN------------------VNYVETSAKTRAN-VDKVFFDLMREI 165 (168)
T ss_dssp GGCCSCHHHHHHHHHHHT------------------CEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcC------------------CeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 3211 1111111111 2345689999999 999999887654
No 112
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.05 E-value=1.2e-09 Score=108.43 Aligned_cols=43 Identities=30% Similarity=0.308 Sum_probs=38.2
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchH
Q 015221 102 SVIMFV-GLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGA 144 (411)
Q Consensus 102 ~vI~lv-G~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a 144 (411)
++|+|+ +..||||||++.+||..|++.|+||++||+|++++..
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 567887 5669999999999999999999999999999987654
No 113
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.05 E-value=4.5e-10 Score=97.20 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|. +.+.. +.+.+ ..+..+...... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~~ 49 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFV------SNDFA----ENKEP-----------TIGAAFLTQRVT-------------INE 49 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------HSCCC----TTCCC-----------CSSEEEEEEEEE-------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHh------cCCCC----CCCCC-----------ccceeEEEEEEE-------------ECC
Confidence 469999999999999999998 32211 00000 011111000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.++||||....... .. .....+|.+++|+|++......+ ....+.. .-.+..+|+||+|....
T Consensus 50 ~~~~~~~~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASL----AP--XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGG----HH--HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEEEEEEEECCCChhhhhh----hh--hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 2467899999996532211 11 11236799999999986532211 1222221 12345788999997432
Q ss_pred hh-------hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 256 GG-------GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 256 ~g-------~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.. .........+ .+...+|+..|.| ++.+++.+.+.+.
T Consensus 124 ~~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 168 (170)
T 1ek0_A 124 GGERKVAREEGEKLAEEKG------------------LLFFETSAKTGEN-VNDVFLGIGEKIP 168 (170)
T ss_dssp SCCCCSCHHHHHHHHHHHT------------------CEEEECCTTTCTT-HHHHHHHHHTTSC
T ss_pred ccccCCCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 10 0111111111 2345689999999 9999999988764
No 114
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.05 E-value=1.1e-09 Score=96.99 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+ .... .|. .+..... .
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~------~~~--~~~~---~~t-----------~~~~~~~-----------------~ 57 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFN------GED--VDTI---SPT-----------LGFNIKT-----------------L 57 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHT------TCC--CSSC---CCC-----------SSEEEEE-----------------E
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCC--CCcc---ccc-----------CccceEE-----------------E
Confidence 45779999999999999999998 544 1111 110 0111000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
..+++.+.++||||..... .+. ......+|.+++|+|++...... .....+.. .-.+..+|+||+|.
T Consensus 58 ~~~~~~~~~~Dt~G~~~~~-----~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 58 EHRGFKLNIWDVGGQKSLR-----SYW-RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp EETTEEEEEEEECCSHHHH-----TTG-GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHH-----HHH-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 1135788999999973211 110 01123689999999998653222 22222222 12356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
..... ........+ ..... ...+...+|+..|.| ++++++.+.+.+.
T Consensus 132 ~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 179 (186)
T 1ksh_A 132 PGALS-CNAIQEALE-----------LDSIRSHHWRIQGCSAVTGED-LLPGIDWLLDDIS 179 (186)
T ss_dssp TTCCC-HHHHHHHTT-----------GGGCCSSCEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CCCCC-HHHHHHHhC-----------hhhccCCceEEEEeeCCCCCC-HHHHHHHHHHHHH
Confidence 54321 111221111 00011 112445689999999 9999999887663
No 115
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.05 E-value=6.2e-10 Score=99.61 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. +.+.+ ..+..+...... ..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~-----------~~~~~~~~~~~~-------------~~ 68 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV------QDHFD----HNISP-----------TIGASFMTKTVP-------------CG 68 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HCCCC----TTCCC-----------CSSEEEEEEEEE-------------CS
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCC----CCcCC-----------CcceeEEEEEEE-------------eC
Confidence 4679999999999999999998 33210 00000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||....... .. .....+|.+++|+|++...... .....+.. .-.+..+|+||+|...
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~~----~~--~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHSL----AP--MYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp SSEEEEEEEEECCSGGGGGG----TH--HHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEcCCCchhhHhh----hH--HhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 12467899999996432211 11 1123679999999997653211 12222222 1235678999999853
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.. ..........+ .+...+|+..|.| ++++++.+.+.+.+
T Consensus 143 ~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 143 IREVPLKDAKEYAESIG------------------AIVVETSAKNAIN-IEELFQGISRQIPP 186 (192)
T ss_dssp GCCSCHHHHHHHHHTTT------------------CEEEECBTTTTBS-HHHHHHHHHHTCC-
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCcC-HHHHHHHHHHHHHh
Confidence 11 11111221111 2345689999999 99999999988753
No 116
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.04 E-value=6.1e-10 Score=99.80 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||++++|. +.+... +.+. .+... . ...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~------~~~~~~-----~~~t-----------~~~~~-~----------------~~~ 63 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLK------NDRLAT-----LQPT-----------WHPTS-E----------------ELA 63 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH------HSCCCC-----CCCC-----------CSCEE-E----------------EEE
T ss_pred ccEEEEECCCCCCHHHHHHHHh------cCCCCc-----cccC-----------CCCCe-E----------------EEE
Confidence 3569999999999999999998 433221 1110 00000 0 011
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
.+++.+.++||||...... +. ......+|.+++|+|++.+..... ....+.. .-.+..+|.||+|..
T Consensus 64 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 64 IGNIKFTTFDLGGHIQARR-----LW-KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp ETTEEEEEEECCCSGGGTT-----SG-GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred ECCEEEEEEECCCCHHHHH-----HH-HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 2357889999999753221 10 011236799999999986643222 2222211 223568899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccc-cccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i-~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
... ....+....+.+. ..+++. .. ....+...+|++.|.| ++++++.+.+.
T Consensus 138 ~~~-~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 189 (190)
T 1m2o_B 138 NAV-SEAELRSALGLLN---TTGSQRIEG-QRPVEVFMCSVVMRNG-YLEAFQWLSQY 189 (190)
T ss_dssp TCC-CHHHHHHHTTCSS---CCC---CCS-SCCEEEEECBTTTTBS-HHHHHHHHHTT
T ss_pred CCC-CHHHHHHHhCCcc---ccccccccc-cceEEEEEeECCcCCC-HHHHHHHHHhh
Confidence 421 1112222233221 111111 00 0112345689999999 99999988764
No 117
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.04 E-value=4.6e-10 Score=99.94 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=60.4
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhcc-CCceEEEEeCCCCCCCh---
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQS-VSVGAVIVTKMDGHAKG--- 256 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~~-~~~~~vIlnK~D~~~~~--- 256 (411)
+.+.|+||||....... . ......+|.+++|+|++.+....+ ....+... -.+..+|+||+|...+.
T Consensus 93 ~~~~i~Dt~G~~~~~~~----~--~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~ 166 (208)
T 3clv_A 93 IKFDIWDTAGQERYASI----V--PLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDI 166 (208)
T ss_dssp EEEEEEECTTGGGCTTT----H--HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCH
T ss_pred eEEEEEECCCcHHHHHH----H--HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCH
Confidence 78999999996432211 1 111236799999999986632211 22222221 14568899999942221
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 167 ~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~~ 202 (208)
T 3clv_A 167 LEVQKYAQDNN------------------LLFIQTSAKTGTN-IKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHHHHHTT------------------CEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------------------CcEEEEecCCCCC-HHHHHHHHHHHH
Confidence 11122222111 2445689999999 999999887654
No 118
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.04 E-value=6e-10 Score=96.57 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|. +.+... .+.+ ..+..+...... ...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~------~~~~~~----~~~~-----------~~~~~~~~~~~~-------------~~~ 49 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFV------EDKFNP----SFIT-----------TIGIDFKIKTVD-------------ING 49 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HCCCCC----------------------CCEEEEEEE-------------SSS
T ss_pred eEEEEECcCCCCHHHHHHHHH------hCCCCC----CCCC-----------ccceeEEEEEEE-------------ECC
Confidence 469999999999999999998 433210 0000 001111000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.|+||||....... .. .....+|.+++|+|++..... ......+.. ...+..+|+||+|...+
T Consensus 50 ~~~~~~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTI----TT--AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp CEEEEEEECCTTGGGTSCC----CH--HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred EEEEEEEEeCCCChhhhhh----HH--HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 1357899999996422110 00 112356899999999865321 112222221 12356889999998433
Q ss_pred hh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 GG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.- .........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-v~~l~~~l~~~~ 163 (170)
T 1g16_A 124 VVTADQGEALAKELG------------------IPFIESSAKNDDN-VNEIFFTLAKLI 163 (170)
T ss_dssp CSCHHHHHHHHHHHT------------------CCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 11 1111222112 2345688999999 999999887765
No 119
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.03 E-value=3.6e-10 Score=97.98 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~-------------~~ 51 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFV------EDSFD---P-NINP-----------TIGASFMTKTVQ-------------YQ 51 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ceeEEEEEEEEE-------------EC
Confidence 3569999999999999999998 33210 0 0000 011111000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh---ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~---~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.++||||...... + .. .....+|.+++|+|++..... ......+. ....+..+|.||+|...
T Consensus 52 ~~~~~~~~~Dt~G~~~~~~-~---~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 52 NELHKFLIWDTAGLERFRA-L---AP--MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp TEEEEEEEEEECCSGGGGG-G---TH--HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CeEEEEEEEcCCCchhhhc-c---cH--hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 1246789999999743221 1 00 112367999999999865321 11222222 22234567889999854
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
... ......... ..+...+|+..|.| ++.+++.+.+.+.
T Consensus 126 ~~~v~~~~~~~~~~~~------------------~~~~~~~Sa~~~~~-i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 126 VREVMERDAKDYADSI------------------HAIFVETSAKNAIN-INELFIEISRRIP 168 (170)
T ss_dssp GCCSCHHHHHHHHHHT------------------TCEEEECBTTTTBS-HHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHc------------------CCEEEEEeCCCCcC-HHHHHHHHHHHHh
Confidence 211 111111111 12345689999999 9999999988764
No 120
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.03 E-value=3.3e-10 Score=101.55 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... ...+..+...... ..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~------~~~~~~~~~---------------~t~~~~~~~~~~~-------------~~ 71 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFT------DDTFCEACK---------------STVGVDFKIKTVE-------------LR 71 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHC------C-----------------------CCTTEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCCcCCC---------------CccceeEEEEEEE-------------EC
Confidence 3569999999999999999998 432211000 0011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH------HHHHHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF------DQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~------~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||....... ... ....+|.+++|+|++...... .........-.+..+|+||+|...
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~----~~~--~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSI----TSA--YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHH----HHH--HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CeEEEEEEEeCCCcHHHHHH----HHH--HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 12367899999997543221 111 122569999999998653221 112222222235688999999843
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.......... .+.......+...+|++.|.| ++++++.+.+.+
T Consensus 146 ~~~v~~~~~~-------------~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~i 188 (192)
T 2il1_A 146 DREITRQQGE-------------KFAQQITGMRFCEASAKDNFN-VDEIFLKLVDDI 188 (192)
T ss_dssp GCCSCHHHHH-------------HHHHTSTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHH-------------HHHHhcCCCeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 2111010000 000000122345689999999 999999887654
No 121
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.03 E-value=3e-09 Score=104.35 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.++++.|.+|+||||++.+||..++++|++|++||+|++
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 456666889999999999999999999999999999986
No 122
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.03 E-value=1.6e-09 Score=97.43 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. +.+.+ ..+..+..... ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~-------------~~ 72 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLC------KNEFR----ENISA-----------TLGVDFQMKTL-------------IV 72 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHH------HCCCC-------------------------CEEEEE-------------EE
T ss_pred CCeEEEEECcCCCCHHHHHHHHH------hCCCC----ccCCC-----------CccceeEEEEE-------------EE
Confidence 45789999999999999999998 33211 00000 00111100000 00
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGH 253 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~ 253 (411)
....+.+.|+||||........ . .....+|.+++|+|++..... ......+.. .-.+..+|+||+|+.
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~~~----~--~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRSIA----K--SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHHHH----H--HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCEEEEEEEEECCCCcchhhhH----H--HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 0124678999999975433211 1 112256999999999765321 111222221 123468899999974
Q ss_pred CCh----------hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKG----------GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~----------g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .......... ..+...+|+..|.| ++++++.+.+.+
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~~~------------------~~~~~~~SA~~g~g-v~el~~~l~~~i 195 (199)
T 2p5s_A 147 DTAATEGQKCVPGHFGEKLAMTY------------------GALFCETSAKDGSN-IVEAVLHLAREV 195 (199)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHH------------------TCEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHc------------------CCeEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 210 0001111111 12345689999999 999999887765
No 123
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.03 E-value=1.8e-09 Score=106.33 Aligned_cols=40 Identities=30% Similarity=0.221 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+++++.|..|+||||++.+||.++++.|++|++|++|+.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4667777999999999999999999999999999999974
No 124
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.03 E-value=1.9e-09 Score=95.37 Aligned_cols=157 Identities=22% Similarity=0.230 Sum_probs=85.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.|+++|.+||||||++++|. +.+.. .+. .|+ .+..... +.
T Consensus 3 ki~v~G~~~~GKSsli~~l~------~~~~~-~~~---~~~--------~t~~~~~-~~--------------------- 42 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT------GKKVR-RGK---RPG--------VTRKIIE-IE--------------------- 42 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH------SCCCS-SSS---STT--------CTTSCEE-EE---------------------
T ss_pred EEEEECCCCCCHHHHHHHHh------CcCCc-cCC---CCC--------ccceeEE-Ee---------------------
Confidence 58999999999999999998 54321 111 111 0000000 00
Q ss_pred CCCEEEEeCCCCCcc-------hHHHHHHHHHH-HH-hcCCCeeEEEeeCcchhhHH-------------HHHHHHhccC
Q 015221 183 NCDLIIVDTSGRHKQ-------EAALFEEMRQV-SE-ATNPDLVIFVMDSSIGQAAF-------------DQAQAFKQSV 240 (411)
Q Consensus 183 ~~d~viIDTaG~~~~-------~~~l~~el~~i-~~-~~~~d~vllVvda~~g~~~~-------------~~a~~f~~~~ 240 (411)
-..+.++||||.... .+.+....... .. +...+.++.|+|+....... .........-
T Consensus 43 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (190)
T 2cxx_A 43 WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 122 (190)
T ss_dssp ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred cCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC
Confidence 116789999995321 11121112111 22 33467888999986543221 1112222222
Q ss_pred CceEEEEeCCCCCCChhh-HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 241 SVGAVIVTKMDGHAKGGG-ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~-~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.+..+|+||+|....... ...+....+.|. ... ..+...+|+..|.| ++++++.+.+.+
T Consensus 123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~Sa~~~~~-v~~l~~~l~~~~ 182 (190)
T 2cxx_A 123 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPL---------SEI--DKVFIPISAKFGDN-IERLKNRIFEVI 182 (190)
T ss_dssp CCEEEEEECGGGCSCHHHHHHHHHHHHTCCG---------GGH--HHHEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CceEEEeehHhccCcHHHHHHHHHHHhhhhh---------hcc--CCcEEEEecCCCCC-HHHHHHHHHHhc
Confidence 346889999998655311 222223233211 000 01235689999999 999999988766
No 125
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.03 E-value=3.4e-10 Score=98.98 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. +.+... .+.+ ..+..+...... ...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~------~~~~~~----~~~~-----------~~~~~~~~~~~~-------------~~~ 60 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM------YDSFDN----TYQA-----------TIGIDFLSKTMY-------------LED 60 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH------HSCCCS----SCCC-----------CCSEEEEEEEEE-------------ETT
T ss_pred eEEEEECCCCCCHHHHHHHHH------cCCCCC----CCCC-----------ceeeEEEEEEEE-------------ECC
Confidence 569999999999999999998 322110 0000 001111100000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHh---ccCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFK---QSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~---~~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.|+||||........ . .....+|.+++|+|++.... .......+. ..-.+..+|+||+|....
T Consensus 61 ~~~~~~~~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 61 RTVRLQLWDTAGQERFRSLI----P--SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp EEEEEEEEEECCSGGGGGGS----H--HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred eEEEEEEEECCCcHHHHHHH----H--HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 23678999999964322111 1 11236799999999975422 111112221 112346789999997432
Q ss_pred hh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 256 GG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 256 ~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.. .........+ .+...+|+..|.| ++.+++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 135 RQVSTEEGERKAKELN------------------VMFIETSAKAGYN-VKQLFRRVAAALP 176 (179)
T ss_dssp CCSCHHHHHHHHHHHT------------------CEEEEEBTTTTBS-HHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHHh
Confidence 11 1111111111 2345689999999 9999999988774
No 126
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.03 E-value=1.7e-09 Score=107.17 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH--HcCCCceEeccCcCcchH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFRAGA 144 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~--~~g~kv~lV~~D~~r~~a 144 (411)
.++++.|..|+||||++.+||..++ +.|+||++|++|+ ++..
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~-~~~l 62 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP-AHNL 62 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCCH
Confidence 4555669999999999999999999 8999999999999 4443
No 127
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.02 E-value=7.2e-10 Score=97.89 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||++++|. +.+. .. .+.+. . ...+..... ..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~------~~~~--~~--~~~~t---------~--~~~~~~~~~--------------~~ 48 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLI------QNHF--VD--EYDPT---------I--EDSYRKQVV--------------ID 48 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSSC--CC--CCCTT---------C--CEEEEEEEE--------------ET
T ss_pred EEEEEEECCCCCCHHHHHHHHH------hCCC--CC--CCCCC---------c--hheEEEEEE--------------EC
Confidence 3569999999999999999998 3331 11 11000 0 000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
...+.+.|+||||....... .... ...+|.+++|+|++..... ......+.. .-.+..+|+||+|..
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSAM----RDQY--MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp TEEEEEEEEECCCC---CTT----HHHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred CcEEEEEEEECCCcHHHHHH----HHHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 11355778999996432211 1111 1246899999999764221 112222221 123568899999986
Q ss_pred CCh---hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~---g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.+. ..........+. +...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~g~g-i~~l~~~l~~~~ 164 (189)
T 4dsu_A 123 SRTVDTKQAQDLARSYGI------------------PFIETSAKTRQG-VDDAFYTLVREI 164 (189)
T ss_dssp SCSSCHHHHHHHHHHHTC------------------CEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 432 111222222222 345589999999 999999888776
No 128
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.02 E-value=5.9e-10 Score=95.99 Aligned_cols=150 Identities=11% Similarity=0.036 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||++++|. +.+.. +.+.+. .+..+..... ...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~--------------~~~ 48 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV------TGTFI----EKYDPT-----------IEDFYRKEIE--------------VDS 48 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------HSCCC----SCCCTT-----------CCEEEEEEEE--------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHH------cCCCc----ccCCCC-----------cceeEEEEEE--------------ECC
Confidence 569999999999999999998 32211 011110 0000000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~~ 254 (411)
..+.+.++||||...... +.. . ....+|.+++|+|++.... .......+.. .-.+..+|+||+|...
T Consensus 49 ~~~~~~l~D~~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFAS-MRD---L--YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEEECCCTTCCHH-HHH---H--HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred EEEEEEEEECCCchhhHH-HHH---H--HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 235689999999754332 111 1 1224689999999986432 1111112211 1235688999999743
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .........+. +...+|+..|.| ++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~ 164 (167)
T 1kao_A 123 EREVSSSEGRALAEEWGC------------------PFMETSAKSKTM-VDELFAEIVRQM 164 (167)
T ss_dssp GCCSCHHHHHHHHHHHTS------------------CEEEECTTCHHH-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCC------------------CEEEecCCCCcC-HHHHHHHHHHHH
Confidence 211 11122221221 345578888999 999998887654
No 129
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.02 E-value=3e-10 Score=100.11 Aligned_cols=154 Identities=19% Similarity=0.121 Sum_probs=85.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|++||||||++++|. +.+..-... ..+..... .
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~----------------t~~~~~~~-----------------~ 57 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ------IGEVVTTKP----------------TIGFNVET-----------------L 57 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC------CSEEEEECS----------------STTCCEEE-----------------E
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCcCccCC----------------cCccceEE-----------------E
Confidence 35679999999999999999998 544421111 00111000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
...++.+.++||||....... . ......+|.+++|+|++..... ......+.. .-.+..+|+||+|.
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 58 SYKNLKLNVWDLGGQTSIRPY----W--RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp EETTEEEEEEEEC----CCTT----G--GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHH----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 112578899999997432210 0 0112367899999998765322 222223322 12356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... ....+....+. ..+. ...+...+|+..|.| ++++++.+.+.+
T Consensus 132 ~~~~-~~~~i~~~~~~-----------~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 178 (183)
T 1moz_A 132 PGAL-SASEVSKELNL-----------VELKDRSWSIVASSAIKGEG-ITEGLDWLIDVI 178 (183)
T ss_dssp TTCC-CHHHHHHHTTT-----------TTCCSSCEEEEEEBGGGTBT-HHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHhCc-----------ccccCCceEEEEccCCCCcC-HHHHHHHHHHHH
Confidence 5431 11112221111 0111 112456689999999 999999988765
No 130
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.02 E-value=2.9e-10 Score=98.38 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 50 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYC------KGIFT---K-DYKK-----------TIGVDFLERQIQ-------------VN 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HCCCC---C-CSSC-----------CCSSSEEEEEEE-------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ceEEEEEEEEEE-------------EC
Confidence 3569999999999999999998 32211 0 0100 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc--cCCceEEEEeCCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ--SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~--~~~~~~vIlnK~D~~~~ 255 (411)
...+.+.++||||...... + .. .....+|.+++|+|++..... ......+.. .-.+..+|+||+|....
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFDA-I---TK--AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp TEEEEEEEECCTTGGGTTC-C---CH--HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred CEEEEEEEEcCCCcHhHHH-H---HH--HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 1246789999999642211 0 00 112367999999999764321 111122211 12346889999997432
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ..+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~~ 165 (168)
T 1z2a_A 125 SCIKNEEAEGLAKRLK------------------LRFYRTSVKEDLN-VSEVFKYLAEKH 165 (168)
T ss_dssp CSSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcC------------------CeEEEEecCCCCC-HHHHHHHHHHHH
Confidence 1 11112222122 2345688999999 999998887654
No 131
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.02 E-value=5.8e-10 Score=98.19 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=84.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. . +.+.+. .+..+..... ..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~------~~~~--~--~~~~~t-----------~~~~~~~~~~--------------~~ 62 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFM------YDEF--V--EDYEPT-----------KADSYRKKVV--------------LD 62 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC--C--CSCCTT-----------CCEEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------hCCC--C--CcCCCc-----------cceEEEEEEE--------------EC
Confidence 4679999999999999999998 4331 0 111110 0011000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HH---HHHHHhc-cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FD---QAQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~---~a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
...+.+.|+||||...... +. ... ...+|.+++|+|++..... .. ....... .-.+..+|+||+|..
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAA-IR---DNY--FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp TEEEEEEEEECCCTTCCHH-HH---HHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCcccHH-HH---HHH--hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1236789999999764332 11 111 1256999999999854321 11 1122222 123468899999974
Q ss_pred CCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ..+.......+ .+...+|+..|.| ++++++.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (187)
T 2a9k_A 137 DKRQVSVEEAKNRAEQWN------------------VNYVETSAKTRAN-VDKVFFDLMREI 179 (187)
T ss_dssp GGCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcC------------------CeEEEeCCCCCCC-HHHHHHHHHHHH
Confidence 321 11112222111 2345689999999 999999887765
No 132
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.01 E-value=6.1e-10 Score=96.69 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||++++|. +........ ... ....+..... ...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~----~~~~~~~~~~-------------~~~ 48 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG------GLQGDHAHE-----------MEN----SEDTYERRIM-------------VDK 48 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH------CC---------------------------CEEEEEEE-------------ETT
T ss_pred EEEEEECCCCCCHHHHHHHHH------hccCccccc-----------CCC----cCCeeeEEEE-------------ECC
Confidence 458999999999999999997 432211111 000 0000000000 001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhcc----CCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQS----VSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~~----~~~~~vIlnK~D~~~ 254 (411)
..+.+.++||||.......+... ....+|.+++|+|.+.... .......+... -.+..+|.||+|...
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDH-----CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp EEEEEEEECCCCC--------CH-----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred eEEEEEEEECCCccccchhhhhh-----hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 24678899999975332111111 1124699999999976432 11222222221 235688999999753
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .........+ .+...+|+..|.| ++++++.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~l~~~i 165 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLS------------------CKHIETSAALHHN-TRELFEGAVRQI 165 (169)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcC------------------CcEEEecCccCCC-HHHHHHHHHHHH
Confidence 211 1111222111 1345689999999 999999887654
No 133
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=7.9e-10 Score=96.99 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... .+ ..+..+...... ..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~---~~-----------t~~~~~~~~~~~-------------~~ 56 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFK------DGAFLAGTF---IS-----------TVGIDFRNKVLD-------------VD 56 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCCCCC---CC-----------CCSCEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCCCCc---CC-----------ceeeEEEEEEEE-------------EC
Confidence 4679999999999999999998 433211111 00 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.++||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|...
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRS-----V-THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp TEEEEEEEEECCCC--------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CEEEEEEEEeCCCcHHHHH-----H-HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 1135789999999642211 1 01122367999999999865321 111222221 2235688999999864
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEYG------------------LPFMETSAKTGLN-VDLAFTAIAKEL 172 (180)
T ss_dssp CCCSCHHHHHHHHHHHT------------------CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 31 11112222112 1345689999999 999999987765
No 134
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.01 E-value=8.8e-10 Score=97.97 Aligned_cols=151 Identities=16% Similarity=0.098 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|+ +.+.. +.+.+ ..+..+..... ..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~--------------~~ 65 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLI------QNHFV----DEYDP-----------TIEDSYRKQVV--------------ID 65 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSSCC----SCCCT-----------TCCEEEEEEEE--------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHH------cCCCc----cccCC-----------ccceEEEEEEE--------------EC
Confidence 3579999999999999999998 32211 00100 00000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HH---HHHHHhc-cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FD---QAQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~---~a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
...+++.|+||||...... +. ......+|.+++|+|++..... .. ....+.. .-.+..+|+||+|..
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSA-----MR-DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp TEEEEEEEEECCC-----------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred CEEEEEEEEECCChHHHHH-----HH-HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 1246789999999642211 11 1112367899999998754321 11 1222221 123468899999985
Q ss_pred CCh---hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~---g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.+. ..........+. +...+|+..|.| ++.+++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~g-i~~l~~~l~~~~ 181 (190)
T 3con_A 140 TRTVDTKQAHELAKSYGI------------------PFIETSAKTRQG-VEDAFYTLVREI 181 (190)
T ss_dssp CCCSCHHHHHHHHHHHTC------------------CEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 431 112222222221 345689999999 999999887765
No 135
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.00 E-value=6.2e-10 Score=99.35 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... + ..+..+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~-------------~~ 70 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFT------RNEFSHDSR----T-----------TIGVEFSTRTVM-------------LG 70 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCSSCC----C-----------CSSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------ccceeEEEEEEE-------------EC
Confidence 4679999999999999999998 433221111 0 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc---CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS---VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~---~~~~~vIlnK~D~~~ 254 (411)
..++.+.|+||||...... + . ......+|.+++|+|++..... ......+... -.+..+|+||+|+..
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~-~---~--~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYRA-I---T--SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp TEEEEEEEEEESCCCTTCT-T---H--HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCchhhhh-h---h--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc
Confidence 1246789999999753321 1 0 1112367999999999865321 1222222221 234688999999853
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .+...+|++.|.| ++.+++.+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (193)
T 2oil_A 145 AREVPTEEARMFAENNG------------------LLFLETSALDSTN-VELAFETVLKEI 186 (193)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211 1111111111 2345589999999 999999887654
No 136
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.00 E-value=1.2e-09 Score=96.62 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|+||||...... + .......+|.+++|+|++..... ......+.. .-.+..+|+||+|....
T Consensus 69 ~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRS-----L-TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEEEEEECCSGGGHH-----H-HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHHH-----H-HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 46789999999753321 1 11223368999999999765322 122222221 22346889999998542
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ..+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~l~~~~ 183 (195)
T 3bc1_A 143 RAVKEEEARELAEKYG------------------IPYFETSAANGTN-ISHAIEMLLDLI 183 (195)
T ss_dssp CCSCHHHHHHHHHHHT------------------CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcC------------------CCEEEEECCCCCC-HHHHHHHHHHHH
Confidence 1 11112222112 2345688999999 999999887765
No 137
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.00 E-value=1.4e-09 Score=97.16 Aligned_cols=152 Identities=14% Similarity=0.042 Sum_probs=83.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... + ..+..+...... ..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~-------------~~ 66 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFT------DKRFQPVHD----L-----------TIGVEFGARMVN-------------ID 66 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH------HSCCCC--------------------CCSSEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------cccceeEEEEEE-------------EC
Confidence 4579999999999999999998 332211110 0 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||....... . ......+|.+++|+|++..... ......+.. .-.+..+|+||+|...
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSI----T--RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCC----C--HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEECCCchhhhhh----H--HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 12367899999996422110 0 0112367999999999865321 112222221 1234678899999843
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..........+ .+...+|+..|.| ++++++.+.+.+
T Consensus 141 ~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 182 (191)
T 2a5j_A 141 RRDVKREEGEAFAREHG------------------LIFMETSAKTACN-VEEAFINTAKEI 182 (191)
T ss_dssp GCCSCHHHHHHHHHHHT------------------CEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 11111221111 2345689999999 999999887654
No 138
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=1.9e-09 Score=96.26 Aligned_cols=155 Identities=16% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+||||||++++|. +.+.. +.+.+. .+..+..... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~ 51 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFV------KGTFR----DTYIPT-----------IEDTYRQVIS--------------C 51 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH------HSCCC----CTTSCC-----------CCEEEEEEEE--------------E
T ss_pred CeeEEEEECCCCCcHHHHHHHHH------cCCCC----CcccCc-----------cccceeEEEE--------------E
Confidence 34679999999999999999998 32211 111110 0000000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH------HHHHHHHhc--cCCceEEEEeCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA------FDQAQAFKQ--SVSVGAVIVTKMD 251 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~------~~~a~~f~~--~~~~~~vIlnK~D 251 (411)
....+.+.|+||||...... +. .. ....+|.+++|+|++..... ......... .-.+..+|+||+|
T Consensus 52 ~~~~~~~~l~Dt~G~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 52 DKSVCTLQITDTTGSHQFPA-MQ---RL--SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp TTEEEEEEEEECCGGGSCHH-HH---HH--HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred CCEEEEEEEEeCCChHHhHH-HH---HH--hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 01246789999999754332 11 11 11246999999999754221 111222221 1124688999999
Q ss_pred CCCChh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 252 GHAKGG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 252 ~~~~~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
...+.- .........+ .+...+|+..|.| ++.+++.+.+.+.+.
T Consensus 126 l~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 126 ETQREVDTREAQAVAQEWK------------------CAFMETSAKMNYN-VKELFQELLTLETRR 172 (199)
T ss_dssp CSSCSSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-HHHHHHHHHHHCSSS
T ss_pred CCccccCHHHHHHHHHHhC------------------CeEEEEecCCCCC-HHHHHHHHHHHHhhh
Confidence 864321 1111111111 1345589999999 999999999887544
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.99 E-value=1.4e-09 Score=109.61 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhc-cCCceEEEEeCCCCCCChhhH
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGGA 259 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~~ 259 (411)
..+.|+||||...... .+ ......+|.+++|+|++.+. ...+....... ..++..+|+||+|.......
T Consensus 75 ~~~~iiDtPGh~~~~~----~~--~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~- 147 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMA----TM--LSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA- 147 (403)
T ss_dssp EEEEEEECCCCGGGHH----HH--HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-
T ss_pred ceEEEEECCCcHHHHH----HH--HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH-
Confidence 6789999999643222 22 22334689999999998652 12222222221 22356889999998654211
Q ss_pred HHHHHhcCCCeEEeccccccccc-ccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 260 LSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 260 l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
........ +.+... ....|..++|++.|.| ++.|++.+.+.++.
T Consensus 148 ~~~~~~i~---------~~l~~~~~~~~~ii~vSA~~g~g-i~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQIK---------QFTKGTWAENVPIIPVSALHKIN-IDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHH---------HHHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHH---------HHHHhhCCCCCEEEEEECCCCcC-hHHHHHHHHHhCCC
Confidence 11111000 000000 1134567799999999 99999999987754
No 140
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=7.1e-10 Score=98.61 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 60 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFT------DDTFD---P-ELAA-----------TIGVDFKVKTIS-------------VD 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCC---c-cCCC-----------ccceEEEEEEEE-------------EC
Confidence 3679999999999999999997 32211 0 0000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc----CCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~----~~~~~vIlnK~D~~ 253 (411)
...+.+.|+||||....... . ......+|.+++|+|++..... ......+... -.+..+|+||+|..
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFRTL----T--PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp TEEEEEEEEEECSSGGGCCS----H--HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CeEEEEEEEeCCCchhhhhh----h--HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 12467899999996432211 1 1112367999999999865322 2222333321 13457899999984
Q ss_pred CCh---hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~---g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.+. ..+.......+ .+...+|+..|.| ++.+++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~~ 177 (195)
T 1x3s_A 135 NREVDRNEGLKFARKHS------------------MLFIEASAKTCDG-VQCAFEELVEKII 177 (195)
T ss_dssp SCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEecCCCCCC-HHHHHHHHHHHHH
Confidence 431 11122222111 2335589999999 9999999887663
No 141
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.99 E-value=6.9e-10 Score=98.62 Aligned_cols=105 Identities=14% Similarity=0.038 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-----hHHHHHHH-Hhc-----cCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-----AAFDQAQA-FKQ-----SVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-----~~~~~a~~-f~~-----~~~~~~vIlnK~D 251 (411)
.+.+.|+||||........ . .....+|.+++|+|++.+. .....+.. +.+ .-.+..+|.||+|
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~-----~-~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~D 146 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASR-----K-LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRD 146 (198)
T ss_dssp EEEEEEEECCSCCSCSHHH-----H-HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTT
T ss_pred ceEEEEEeCCChHHHHHHH-----H-HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchh
Confidence 4678999999975433211 1 1233679999999998431 12222222 111 1235688999999
Q ss_pred CCCChh--hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 252 GHAKGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 252 ~~~~~g--~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...... .+..... . ..+.+...+|+..|.| ++++++.+.+.+
T Consensus 147 l~~~~~~~~~~~~~~----------------~-~~~~~~~~~Sa~~~~g-v~~l~~~l~~~i 190 (198)
T 3t1o_A 147 LPDALPVEMVRAVVD----------------P-EGKFPVLEAVATEGKG-VFETLKEVSRLV 190 (198)
T ss_dssp STTCCCHHHHHHHHC----------------T-TCCSCEEECBGGGTBT-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHH----------------h-cCCceEEEEecCCCcC-HHHHHHHHHHHH
Confidence 854311 1111111 0 1122456689999999 999999887654
No 142
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.98 E-value=6.9e-10 Score=98.83 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.... +.+ ..+..+..... ...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~~----~~~-----------t~~~~~~~~~~-------------~~~ 67 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYA------DDSFTPA----FVS-----------TVGIDFKVKTV-------------YRH 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCCCCS----CCC-----------CCCCEEEEEEE-------------EET
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCCCC----cCC-----------ceeEEEEEEEE-------------EEC
Confidence 4679999999999999999998 3332100 000 01111110000 000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||....... .......+|.+++|+|++.... .......+.. ...+..+|+||+|+..
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRTI------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp TEEEEEEEEECCSCCSSCCS------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CeEEEEEEEeCCCcHHHhhh------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 12467899999996432210 0112236799999999976532 1122222222 1235688999999854
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~i 183 (189)
T 2gf9_A 142 ERVVPAEDGRRLADDLG------------------FEFFEASAKENIN-VKQVFERLVDVI 183 (189)
T ss_dssp GCCSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 21 11112222122 1345689999999 999999887654
No 143
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.98 E-value=1.4e-09 Score=95.05 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|++||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------~~~~~~~~~~~~-------------~~ 52 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYV------TNKFD---T-QLFH-----------TIGVEFLNKDLE-------------VD 52 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCC---C----------------CCSEEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHH------cCCCC---C-CCCC-----------ceeeeEEEEEEE-------------EC
Confidence 4569999999999999999998 32211 0 0000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHH---HHHHhc----cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQ---AQAFKQ----SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~---a~~f~~----~~~~~~vIlnK~ 250 (411)
...+.+.|+||||...... +. ......+|.+++|+|++..... ... ...... .-.+..+|+||+
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 126 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRS-----LR-TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126 (177)
T ss_dssp TEEEEEEEEECCCCGGGHH-----HH-GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred CEEEEEEEEeCCCchhhhh-----hH-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECC
Confidence 1136789999999643221 11 1122367999999999865321 111 122211 122468899999
Q ss_pred CCCCChh---hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 251 DGHAKGG---GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 251 D~~~~~g---~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|...+.- ........ ....+...+|+..|.| ++.+++.+.+.+
T Consensus 127 Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 172 (177)
T 1wms_A 127 DISERQVSTEEAQAWCRD-----------------NGDYPYFETSAKDATN-VAAAFEEAVRRV 172 (177)
T ss_dssp TCSSCSSCHHHHHHHHHH-----------------TTCCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHh-----------------cCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 9853211 11111110 1123456689999999 999999887765
No 144
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.97 E-value=8e-10 Score=99.79 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=84.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+.+ ..++.+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 53 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFS------DDTYT---N-DYIS-----------TIGVDFKIKTVE-------------LD 53 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HCCCC---T-TCCC-----------SSCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHh------cCCCC---C-CCCC-----------cccceeEEEEEE-------------EC
Confidence 3579999999999999999998 33211 0 0000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHh---ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK---QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~---~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... + .......+|.+++|+|++....... ....+. ....+..+|+||+|+..
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRT-----I-TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TEEEEEEEECCTTTTTTTC-----C-CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred CEEEEEEEEeCCChHHHHH-----H-HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 1236789999999643211 0 0111236799999999986532211 122222 12235688999999854
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~i 169 (206)
T 2bcg_Y 128 KRVVEYDVAKEFADANK------------------MPFLETSALDSTN-VEDAFLTMARQI 169 (206)
T ss_dssp TCCSCHHHHHHHHHHTT------------------CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 311 1111221111 2345689999999 999999887765
No 145
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=98.97 E-value=1.1e-08 Score=101.94 Aligned_cols=122 Identities=21% Similarity=0.205 Sum_probs=74.0
Q ss_pred CCCCCCeEEEEEc-CCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc-----------chHHHHHHH-------------
Q 015221 96 PKKGKPSVIMFVG-LQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR-----------AGAFDQLKQ------------- 150 (411)
Q Consensus 96 ~~~~~~~vI~lvG-~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r-----------~~a~~qL~~------------- 150 (411)
...+++++|+++| ..|+||||++.+||..|+++|++|++||+|++. .+..+.+..
T Consensus 138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 3445678999986 669999999999999999999999999999321 111122211
Q ss_pred -hh--hhcCcceeccCCCC-Ch----HHHHHHHHHHHh-cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEe
Q 015221 151 -NA--TKAKIPFYGSYTES-DP----VRIAVEGVETFK-KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVM 221 (411)
Q Consensus 151 -~~--~~~~v~~~~~~~~~-d~----~~i~~~~l~~~~-~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVv 221 (411)
.. ...++.+....... ++ .......+..+. ...||+||||||+..... . ......+|.+++|+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~--~------~~~l~~aD~vivv~ 289 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIE--K------LKLLSKAWRIIVVN 289 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHH--H------HHHHTTCSEEEEEE
T ss_pred HHhhcCCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHH--H------HHHHHHCCEEEEEe
Confidence 11 12344444322211 11 112223333332 258999999998654322 1 11223569999999
Q ss_pred eCcc
Q 015221 222 DSSI 225 (411)
Q Consensus 222 da~~ 225 (411)
.+..
T Consensus 290 ~~~~ 293 (373)
T 3fkq_A 290 DGSQ 293 (373)
T ss_dssp CCCH
T ss_pred cCCc
Confidence 8864
No 146
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.97 E-value=3.5e-10 Score=114.69 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+|+||||++++|. +.+...++. ....+..-.. .. .
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~------~~~~~~~~~-----------~~gtT~d~~~-~~-----------------~ 77 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALV------GQNVSIVSD-----------YAGTTTDPVY-KS-----------------M 77 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSC------C------------------------CCCCE-EE-----------------E
T ss_pred CCEEEEEECCCCCCHHHHHHHHH------cCCCCccCC-----------CCCeeeeeEE-EE-----------------E
Confidence 45679999999999999999998 665544432 1111111000 00 0
Q ss_pred hcCC-CCEEEEeCCCCCcchHH---HHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKEN-CDLIIVDTSGRHKQEAA---LFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~-~d~viIDTaG~~~~~~~---l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
...+ ..+.|+||||....... ..... ......+|.+++|+|++...........+.+.-.+..+|+||+|....
T Consensus 78 ~~~~~~~l~liDTpG~~d~~~l~~~~~~~~--~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 78 ELHPIGPVTLVDTPGLDDVGELGRLRVEKA--RRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGE 155 (423)
T ss_dssp EETTTEEEEEEECSSTTCCCTTCCCCHHHH--HHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTC
T ss_pred EECCCCeEEEEECcCCCcccchhHHHHHHH--HHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCc
Confidence 0112 27899999997533210 01111 122336899999999943333333444444433456889999998554
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
... .... .+.+.. -.+...+|+..|.| ++++++.+.+.+++
T Consensus 156 ~~~--~~~~-------------~l~~~~-g~~v~~vSAktg~g-I~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 156 KAE--ELKG-------------LYESRY-EAKVLLVSALQKKG-FDDIGKTISEILPG 196 (423)
T ss_dssp CCT--HHHH-------------HSSCCT-TCCCCCCSSCCTTS-TTTHHHHHHHHSCC
T ss_pred cHH--HHHH-------------HHHHHc-CCCEEEEECCCCCC-HHHHHHHHHHhhhh
Confidence 222 1111 111100 12456789999999 99999999998843
No 147
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.97 E-value=8.5e-10 Score=99.25 Aligned_cols=152 Identities=15% Similarity=0.062 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.... +.+ ..+..+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~----~~~-----------t~~~~~~~~~~~-------------~~ 53 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYA------DDSFTPA----FVS-----------TVGIDFKVKTIY-------------RN 53 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------TCCCCSC----CCC-----------CCSEEEEEEEEE-------------ET
T ss_pred eeEEEEECCCCCCHHHHHHHHh------cCCCCCC----cCC-----------ccceeEEEEEEE-------------EC
Confidence 3569999999999999999998 5432110 000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... + .......+|.+++|+|++..... ......+.. ...+..+|+||+|...
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 54 DKRIKLQIWDTAGLERYRT-----I-TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp TEEEEEEEEEECCSGGGHH-----H-HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred CeEEEEEEEECCCchhhcc-----h-HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 1246789999999753321 1 11122367999999999865321 111222221 2235688999999854
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 169 (203)
T 1zbd_A 128 ERVVSSERGRQLADHLG------------------FEFFEASAKDNIN-VKQTFERLVDVI 169 (203)
T ss_dssp SCCSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-SHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHCC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 311 1112222112 1345688999999 988888876654
No 148
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.96 E-value=2.1e-09 Score=112.15 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=64.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccC--CCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY--TESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~--~~~d~~~i~~~~l~ 177 (411)
....|+++|.+||||||++++|. +.+.. . . .....++.++... .... +.+
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~------~~~~~---~-~-----------~~~t~g~~~~~~~~~~~~~-v~~------ 91 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLI------GETFD---P-K-----------ESQTHGLNVVTKQAPNIKG-LEN------ 91 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHH------C--------------------------CCCEEEEEGGGSGG-GTT------
T ss_pred cceEEEEECCCCCCHHHHHHHHh------cCCCC---C-C-----------CCCccceEEEEeccccccc-eee------
Confidence 34679999999999999999998 43321 0 0 0001112211100 0000 000
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhcc--CCceEEEEeCCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQS--VSVGAVIVTKMDGHAK 255 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~~--~~~~~vIlnK~D~~~~ 255 (411)
.....++.+.++||||...... +.. .....+|.+++|+|++...........+... -.+..+|.||+|....
T Consensus 92 ~~~~~~~~~~i~Dt~G~e~~~~-~~~-----~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 92 DDELKECLFHFWDFGGQEIMHA-SHQ-----FFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp CSTTTTCEEEEECCCSCCTTTT-TCH-----HHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred cCCCceEEEEEEECCcHHHHHH-HHH-----HHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 0001257899999999532221 000 0112579999999998764443333333322 1356889999998643
No 149
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.96 E-value=1.1e-09 Score=97.48 Aligned_cols=156 Identities=15% Similarity=0.089 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. .. .|. .+..... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~------~~~~~--~~---~~t-----------~~~~~~~-----------------~ 61 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH------LGDVV--TT---VPT-----------VGVNLET-----------------L 61 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC------CSCCE--EE---CSS-----------TTCCEEE-----------------E
T ss_pred CceEEEEECCCCCCHHHHHHHHH------cCCCC--Cc---CCC-----------CceEEEE-----------------E
Confidence 35679999999999999999996 43321 11 110 0111000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
...++.+.++||||....... . ......+|.+++|+|++..... ......+.. .-.+..+|+||+|.
T Consensus 62 ~~~~~~~~~~Dt~G~~~~~~~----~--~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 62 QYKNISFEVWDLGGQTGVRPY----W--RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp EETTEEEEEEEECCSSSSCCC----C--SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred EECCEEEEEEECCCCHhHHHH----H--HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 112578899999996432210 0 0112267999999999865322 222222222 12356889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
..... ...+....+. +..... ..+...+|+..|.| ++++++.+.+.+.
T Consensus 136 ~~~~~-~~~~~~~~~~--------~~~~~~--~~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 183 (189)
T 2x77_A 136 PDAAS-EAEIAEQLGV--------SSIMNR--TWTIVKSSSKTGDG-LVEGMDWLVERLR 183 (189)
T ss_dssp TTCCC-HHHHHHHTTG--------GGCCSS--CEEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred cCCCC-HHHHHHHhCh--------hhccCC--ceEEEEccCCCccC-HHHHHHHHHHHHH
Confidence 54321 1112221110 000110 11456689999999 9999999887663
No 150
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.96 E-value=1.3e-09 Score=97.81 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. .. .+.+. .+..+..... ..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~------~~~~--~~--~~~~t-----------~~~~~~~~~~--------------~~ 58 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFM------YDEF--VE--DYEPT-----------KADSYRKKVV--------------LD 58 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC--CT--TCCTT-----------CCEEEEEEEE--------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHH------hCCC--CC--CCCCc-----------cceEEEEEEE--------------EC
Confidence 4679999999999999999998 4331 11 11110 0111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
...+.+.|+||||...... +. ... ...+|.+++|+|++..... ......+.. .-.+..+|+||+|..
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAA-IR---DNY--FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp TEEEEEEEEECCCTTCCHH-HH---HHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred CEEEEEEEEcCCChhhhHH-HH---HHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 1236789999999764432 11 111 1246899999999854321 111112211 123468899999985
Q ss_pred CChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~i 175 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWN------------------VNYVETSAKTRAN-VDKVFFDLMREI 175 (206)
T ss_dssp GGCCSCHHHHHHHHHHHT------------------CEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 4211 1112222111 2345689999999 999999887765
No 151
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.2e-09 Score=105.95 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+.....|+|||.|||||||++|+|. |.++.+ +. .+.+++.-++ +
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt------~~~~~v-~~-----------~pftT~~~~~--g---------------- 112 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLT------GTESEA-AE-----------YEFTTLVTVP--G---------------- 112 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHH------SBCCCG-GG-----------TCSSCCCEEE--E----------------
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHh------CCCCcc-cC-----------CCCceeeeee--E----------------
Confidence 3334679999999999999999999 876543 33 1222222111 1
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHH-HHHhcCCCeeEEEeeCcchhhHHHHH----HHHhcc--CCceEEEEeCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQ-VSEATNPDLVIFVMDSSIGQAAFDQA----QAFKQS--VSVGAVIVTKM 250 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~-i~~~~~~d~vllVvda~~g~~~~~~a----~~f~~~--~~~~~vIlnK~ 250 (411)
.+...+..+.|+||||............+. +.....+|.+++|+|++.+....+.. ..+... -.+..+++||.
T Consensus 113 ~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~ 192 (376)
T 4a9a_A 113 VIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKK 192 (376)
T ss_dssp EEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEEC
T ss_pred EEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHh
Confidence 011236789999999986543221111122 22334689999999998654333322 222111 13457889999
Q ss_pred CC
Q 015221 251 DG 252 (411)
Q Consensus 251 D~ 252 (411)
|.
T Consensus 193 d~ 194 (376)
T 4a9a_A 193 EK 194 (376)
T ss_dssp SS
T ss_pred hh
Confidence 95
No 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.4e-09 Score=94.33 Aligned_cols=132 Identities=17% Similarity=0.088 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCc--eEeccCcCcchHHHHHHHhhhh
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP--ALVCADTFRAGAFDQLKQNATK 154 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv--~lV~~D~~r~~a~~qL~~~~~~ 154 (411)
..+.+++.+++.....+. ..+...|+++|++||||||++++|. +... .+.+. .+.
T Consensus 27 ~~l~~~l~~~~~~~~~~~---~~~~~~i~vvG~~g~GKSsll~~l~------~~~~~~~~~~~---~~~----------- 83 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGG---GSYQPSIIIAGPQNSGKTSLLTLLT------TDSVRPTVVSQ---EPL----------- 83 (193)
T ss_dssp HHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHH------HSSCC-----------------------
T ss_pred HHHHHHHHHHHHhhcCCC---CCCCCEEEEECCCCCCHHHHHHHHh------cCCCCcccccC---CCc-----------
Confidence 456667777765433221 1234679999999999999999998 4321 11111 000
Q ss_pred cCcceeccCCCCChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc-chhhHHH--
Q 015221 155 AKIPFYGSYTESDPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS-IGQAAFD-- 231 (411)
Q Consensus 155 ~~v~~~~~~~~~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~-~g~~~~~-- 231 (411)
+ ..+ ..++.+.++||||...........+... ...+|.+++|+|++ .......
T Consensus 84 --~-------~~~-------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~ 139 (193)
T 2ged_A 84 --S-------AAD-------------YDGSGVTLVDFPGHVKLRYKLSDYLKTR--AKFVKGLIFMVDSTVDPKKLTTTA 139 (193)
T ss_dssp ------------C-------------CCCTTCSEEEETTCCBSSCCHHHHHHHH--GGGEEEEEEEEETTCCHHHHHHHH
T ss_pred --e-------eee-------------ecCCeEEEEECCCCchHHHHHHHHHHhh--cccCCEEEEEEECCCCchhHHHHH
Confidence 0 000 0357889999999754432222222211 12358999999998 3322111
Q ss_pred -HHHHHh-------ccCCceEEEEeCCCCCCC
Q 015221 232 -QAQAFK-------QSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 232 -~a~~f~-------~~~~~~~vIlnK~D~~~~ 255 (411)
....+. ..-.+..+|+||+|....
T Consensus 140 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 140 EFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 111111 012346889999998543
No 153
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.96 E-value=9e-10 Score=95.58 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=81.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. +.+.+ ..+..+...... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~------~~~~~----~~~~~-----------t~~~~~~~~~~~-------------~~ 51 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYC------ENKFN----DKHIT-----------TLGASFLTKKLN-------------IG 51 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH------HCCCC----SSCCC-----------CCSCEEEEEEEE-------------SS
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCC----cCCCC-----------ccceEEEEEEEE-------------EC
Confidence 3569999999999999999998 33211 00000 001111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.++||||..... .+. ......+|.+++|+|++....... ....+.. .-.+..+|+||+|...
T Consensus 52 ~~~~~l~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 52 GKRVNLAIWDTAGQERFH-----ALG-PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125 (170)
T ss_dssp SCEEEEEEEECCCC-------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHhhh-----hhH-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 123578899999964221 110 011236789999999976532111 1112211 2234678999999854
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 167 (170)
T 1z08_A 126 ERHVSIQEAESYAESVG------------------AKHYHTSAKQNKG-IEELFLDLCKRM 167 (170)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 21 11112222111 2334589999999 999999887654
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.95 E-value=2.3e-09 Score=108.01 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEe---ccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV---CADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV---~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
...|+++|.+|+||||++++|...+.+.|+..... ..|... .+ + ..++.+.... .
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~---~e--~----~~GiTi~~~~-------------~ 68 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAP---EE--R----ARGITINTAH-------------V 68 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSH---HH--H----HHTCCCSCEE-------------E
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCH---HH--H----HcCCCEEeee-------------e
Confidence 46799999999999999999998776666411000 011110 00 0 1112110000 0
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.+...++.+.|+||||..... ..+ ......+|.+++|+|++.+.. ..+....... .++...+++||+|...
T Consensus 69 ~~~~~~~~~~iiDtpG~~~f~----~~~--~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 69 EYETAKRHYSHVDCPGHADYI----KNM--ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp EEECSSCEEEEEECCCSGGGH----HHH--HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred EeccCCeEEEEEECCChHHHH----HHH--HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 011236889999999976432 122 223347899999999987632 2222222222 2232467899999864
No 155
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.95 E-value=1.5e-09 Score=95.93 Aligned_cols=152 Identities=14% Similarity=0.047 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.... +.+ ..+..+...... ..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~~----~~~-----------~~~~~~~~~~~~-------------~~ 55 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFI------EKKFKDD----SNH-----------TIGVEFGSKIIN-------------VG 55 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCCTT----CCC-----------CSEEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------cCCCCCC----CCC-----------ccceEEEEEEEE-------------EC
Confidence 4679999999999999999998 3221100 000 001111000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHH---HHHhccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQA---QAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a---~~f~~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... + .......+|.+++|+|++...... ... ......-.+..+|+||+|...
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRS-----V-TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp TEEEEEEEEEECCSGGGHH-----H-HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHHHHH-----H-HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 1136789999999653221 1 111233689999999998653211 111 222222235688999999843
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~~ 171 (186)
T 2bme_A 130 DREVTFLEASRFAQENE------------------LMFLETSALTGEN-VEEAFVQCARKI 171 (186)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 211 1111111111 2345589999999 999999887654
No 156
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.95 E-value=3.3e-10 Score=102.74 Aligned_cols=169 Identities=15% Similarity=0.064 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||+++++. +... .. .+.+. . + ..+......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~------~~~~--~~--~~~~t---------~--~-~~~~~~~~~------------- 73 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYT------TNAF--PG--EYIPT---------V--F-DNYSANVMV------------- 73 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH------HSCC--CC---CCCC---------S--E-EEEEEEEEC-------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHH------hCCC--CC--CcCCe---------e--c-ceeEEEEEE-------------
Confidence 45679999999999999999998 2111 00 00000 0 0 000000000
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 253 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~ 253 (411)
....+.+.|+||||...... +. ......+|.+++|+|++......+ ....+... -.+..+|+||+|..
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 74 DGKPVNLGLWDTAGLEDYDR-----LR-PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp C-CEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred CCEEEEEEEEECCCchhhHH-----HH-HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 01235667999999743211 10 012236799999999986532222 12222221 23468899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .................+.....-..+.+...+|++.|.| ++.+++.+.+.+
T Consensus 148 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~ 203 (204)
T 4gzl_A 148 DDKD-TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 203 (204)
T ss_dssp TCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHTT
T ss_pred cchh-hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCC-HHHHHHHHHHHh
Confidence 5422 1111111111000000011111111223456689999999 999999987653
No 157
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=97.29 Aligned_cols=153 Identities=15% Similarity=0.058 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+. ...+..+...... ..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~------~~~~~---~-~~~-----------~t~~~~~~~~~~~-------------~~ 74 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFK------TGAFS---E-RQG-----------STIGVDFTMKTLE-------------IQ 74 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSCC-------------------------CEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------hCCCC---C-CCC-----------CCcceEEEEEEEE-------------EC
Confidence 4679999999999999999997 32211 0 000 0011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... + . ......+|.+++|+|++..... ......+.. .-.+..+|.||+|...
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~-~---~--~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRT-I---T--QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp TEEEEEEEECCTTCGGGHH-H---H--HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEECCCcHhHHH-H---H--HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 1136889999999753321 1 1 1122367999999999865321 112222221 2234678899999854
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..+.......+ +.+...+|+..|.| ++.+++.+.+.+
T Consensus 149 ~~~v~~~~~~~~~~~~~-----------------~~~~~~~SA~~g~g-i~~l~~~l~~~i 191 (201)
T 2hup_A 149 LREVSLAEAQSLAEHYD-----------------ILCAIETSAKDSSN-VEEAFLRVATEL 191 (201)
T ss_dssp GCCSCHHHHHHHHHHTT-----------------CSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC-----------------CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 11112222111 12445689999999 999999887765
No 158
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.94 E-value=2.2e-09 Score=102.04 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+|+||||++|.|. |.++..++.. .+ .+.....+. ..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~------~~~~~~~~~~--~~---------~t~~~~~~~------------------~~ 83 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSII------GERVVSISPF--QS---------EGPRPVMVS------------------RS 83 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------TSCCSCCCSS--SC---------CCSSCEEEE------------------EE
T ss_pred CeEEEEECCCCCCHHHHHHHHh------CCCcccccCC--CC---------cceeeEEEE------------------Ee
Confidence 4679999999999999999999 7665444331 00 011101100 11
Q ss_pred cCCCCEEEEeCCCCCcch---HHHHHHHHHHHHhcCCCeeEEEeeCcc-hh--hHHHHHHHHhccC-----CceEEEEeC
Q 015221 181 KENCDLIIVDTSGRHKQE---AALFEEMRQVSEATNPDLVIFVMDSSI-GQ--AAFDQAQAFKQSV-----SVGAVIVTK 249 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~---~~l~~el~~i~~~~~~d~vllVvda~~-g~--~~~~~a~~f~~~~-----~~~~vIlnK 249 (411)
..++.+.|+||||..... ......+........+|.+++|+|... .. ........+.+.. .+..+|+||
T Consensus 84 ~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK 163 (270)
T 1h65_A 84 RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH 163 (270)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence 236789999999985332 333333332222235789999976542 11 1222333332211 246889999
Q ss_pred CCCCCC
Q 015221 250 MDGHAK 255 (411)
Q Consensus 250 ~D~~~~ 255 (411)
+|....
T Consensus 164 ~Dl~~~ 169 (270)
T 1h65_A 164 AQFSPP 169 (270)
T ss_dssp CSCCCG
T ss_pred cccCCc
Confidence 998644
No 159
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.94 E-value=1.9e-09 Score=94.40 Aligned_cols=151 Identities=15% Similarity=0.070 Sum_probs=82.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +... .. .+.+ ..+..+..... ..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~------~~~~--~~--~~~~-----------t~~~~~~~~~~--------------~~ 53 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFI------QSYF--VS--DYDP-----------TIEDSYTKICS--------------VD 53 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSC--CS--SCCT-----------TCCEEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCcC--cc--ccCC-----------CcCceEEEEEE--------------EC
Confidence 4679999999999999999998 3221 00 0100 00111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHH----hccCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF----KQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f----~~~~~~~~vIlnK~D~~ 253 (411)
...+.+.|+||||...... +. ... ...+|.+++|+|++..... ......+ ...-.+..+|+||+|..
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGA-MR---EQY--MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp TEEEEEEEEECCCTTTTSC-CH---HHH--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhHH-HH---HHH--HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1136788999999643221 11 111 1246899999999864321 1111122 11223468899999985
Q ss_pred CChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... .+....... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~~v~~~~~~~~~~~~------------------~~~~~~~Sa~~~~g-v~~l~~~l~~~~ 170 (181)
T 2fn4_A 128 SQRQVPRSEASAFGASH------------------HVAYFEASAKLRLN-VDEAFEQLVRAV 170 (181)
T ss_dssp GGCCSCHHHHHHHHHHT------------------TCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHc------------------CCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 4211 111111111 12345689999999 999999887765
No 160
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.94 E-value=5.4e-10 Score=100.62 Aligned_cols=156 Identities=16% Similarity=0.078 Sum_probs=84.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+... .+.+ ..+..++..... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~~ 53 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYV------NKKFSN----QYKA-----------TIGADFLTKEVM-------------VD 53 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------HSCCCS----SCCC-----------CCSEEEEEEEEE-------------SS
T ss_pred ceEEEEECcCCCCHHHHHHHHH------cCCCCC----CCCC-----------cccceEEEEEEE-------------EC
Confidence 4679999999999999999998 433210 0110 001111110000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhc-------cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQ-------SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~-------~~~~~~vIlnK~ 250 (411)
...+.+.|+||||...... + .......+|.+++|+|++.+... ......+.. ...+..+|+||+
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQS-----L-GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp SCEEEEEEEEECSSGGGSC-----S-CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred CEEEEEEEEeCCCcHHHHH-----h-HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 1236789999999642211 0 00112367999999999765321 111111111 112468899999
Q ss_pred CCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 251 DGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 251 D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
|...+.-....... +.......+...+|+..|.| ++.+++.+.+.+
T Consensus 128 Dl~~~~~~~~~~~~--------------~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 173 (207)
T 1vg8_A 128 DLENRQVATKRAQA--------------WCYSKNNIPYFETSAKEAIN-VEQAFQTIARNA 173 (207)
T ss_dssp TSSCCCSCHHHHHH--------------HHHHTTSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCcccccCHHHHHH--------------HHHhcCCceEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 98633111111100 00001123456689999999 999999987765
No 161
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.94 E-value=1.1e-08 Score=109.92 Aligned_cols=132 Identities=20% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+.+.|+++|.+|+||||++++|........ +..-|+.. .....+...+ ...++.+.... ..+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~-~~g~v~~~-~~~~D~~~~e---~~~giTi~~~~-------------~~~ 70 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIH-KIGETHEG-ASQMDWMEQE---QDRGITITSAA-------------TTA 70 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC------------------------------CCSE-------------EEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCC-ceecccchhh---hhcCceEeeee-------------EEE
Confidence 457899999999999999999984321100 00101110 0000000000 00111110000 001
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
...++.+.|+||||...........+ ..+|.+++|+|++.+... ..........-.+..+|+||+|....
T Consensus 71 ~~~~~~i~liDTPG~~df~~~~~~~l------~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 71 AWEGHRVNIIDTPGHVDFTVEVERSL------RVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EETTEEEEEECCCCCSSCCHHHHHHH------HHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred EECCeeEEEEECcCCcchHHHHHHHH------HHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 12468899999999875443322222 247999999999876322 22222232222346889999998543
No 162
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.94 E-value=6.1e-09 Score=109.86 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL 148 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL 148 (411)
.++++++.|.+|+||||++.+||..++++|++|++|++|+ ++...+.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l~~~l 54 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNVGQVF 54 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCHHHHT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHHHHh
Confidence 4567888899999999999999999999999999999998 45544433
No 163
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.93 E-value=2.2e-09 Score=95.52 Aligned_cols=154 Identities=15% Similarity=0.042 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+..- .+.+ ..+..+...... .
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~------~~~~~~----~~~~-----------t~~~~~~~~~~~-------------~ 64 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFC------AGRFPD----RTEA-----------TIGVDFRERAVD-------------I 64 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSSCCS----SCCC-----------CCSCCEEEEEEE-------------E
T ss_pred ceEEEEEECCCCCCHHHHHHHHH------cCCCCC----CCCC-----------CcceEEEEEEEE-------------E
Confidence 34679999999999999999998 322110 0000 001111100000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~ 252 (411)
....+.+.|+||||.... ...+. ......+|.+++|+|++.... .......+.. .-.+..+|+||+|.
T Consensus 65 ~~~~~~~~l~Dt~G~~~~----~~~~~-~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERF----RKSMV-QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp TTEEEEEEEEECCCSHHH----HTTTH-HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred CCEEEEEEEEECCCchhh----hhhhh-HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 012367899999996321 10111 111236799999999976422 1111222221 12346889999998
Q ss_pred CCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC---CCCHHHHHHHHHhhC
Q 015221 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG---MGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g---~Gdi~~L~e~i~~~~ 311 (411)
.... ..........+. +...+|+..| .| ++.+++.+.+.+
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~~~~-i~~l~~~l~~~i 186 (189)
T 1z06_A 140 RSAIQVPTDLAQKFADTHSM------------------PLFETSAKNPNDNDH-VEAIFMTLAHKL 186 (189)
T ss_dssp GGGCCSCHHHHHHHHHHTTC------------------CEEECCSSSGGGGSC-HHHHHHHHC---
T ss_pred cccceeCHHHHHHHHHHcCC------------------EEEEEeCCcCCcccC-HHHHHHHHHHHH
Confidence 4321 111112221121 3355788888 88 899888887655
No 164
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.93 E-value=4.6e-09 Score=107.09 Aligned_cols=66 Identities=26% Similarity=0.427 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHh-ccCCceEEEEeCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~-~~~~~~~vIlnK~D 251 (411)
.++.+.|+||||... +...+ ......+|.+++|+|++.|. ...+.+.... ...+...+++||+|
T Consensus 93 ~~~~~~iiDTPGh~~----f~~~~--~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 93 EKKHFTILDAPGHKS----FVPNM--IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 166 (439)
T ss_pred CCeEEEEEECCChHH----HHHHH--HhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCC
Confidence 467899999999642 22222 12233689999999998762 2222222222 22333578899999
Q ss_pred CC
Q 015221 252 GH 253 (411)
Q Consensus 252 ~~ 253 (411)
..
T Consensus 167 l~ 168 (439)
T 3j2k_7 167 DP 168 (439)
T ss_pred Cc
Confidence 84
No 165
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.93 E-value=8.7e-10 Score=100.69 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. . .+.+. ....+..... .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~------~~~~~---~-~~~~t-----------~~~~~~~~~~--------------~ 77 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFA------DGAFP---E-SYTPT-----------VFERYMVNLQ--------------V 77 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHH------C-----------CCC-----------CCEEEEEEEE--------------E
T ss_pred ceEEEEEECcCCCCHHHHHHHHH------cCCCC---C-CCCCc-----------cceeEEEEEE--------------E
Confidence 34679999999999999999998 43211 0 00000 0000000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGH 253 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~ 253 (411)
....+.+.|+||||..... .+.. .....+|.+++|+|++....... ....+.. .-.+..+|.||+|..
T Consensus 78 ~~~~~~l~l~Dt~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 78 KGKPVHLHIWDTAGQDDYD-----RLRP-LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp TTEEEEEEEEEC---------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCchhhh-----HHHH-HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 0123578999999964221 1110 11236789999999986532211 1122221 123468899999986
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... ........+....-...++.+..-..+.+...+|+..|.| ++++++.+.+.+
T Consensus 152 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~~ 207 (214)
T 2j1l_A 152 KDKS-LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN-VHAVFQEAAEVA 207 (214)
T ss_dssp SCHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccch-hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCC-HHHHHHHHHHHH
Confidence 5421 1111111111000000011111111123456689999999 999999987765
No 166
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.92 E-value=6.6e-09 Score=107.18 Aligned_cols=157 Identities=15% Similarity=0.041 Sum_probs=91.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. +.. .| ..+..+.. +.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~------~~~~--~~~---~~-----------T~~~~~~~-----------------~~ 362 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLK------LGQS--VTT---IP-----------TVGFNVET-----------------VT 362 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSSC--CCC---CC-----------CSSEEEEE-----------------EE
T ss_pred ceeEEEEcCCCCCHHHHHHHHh------cCCC--CCc---CC-----------ccceeEEE-----------------EE
Confidence 3679999999999999999998 4331 111 00 01111100 11
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
..++.+.|+||||...... + .......+|.+++|+|++....... ....+.. .-.+..+|+||+|+.
T Consensus 363 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 363 YKNVKFNVWDVGGQDKIRP-----L-WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp SSSCEEEEEEECCCGGGSG-----G-GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred eCCEEEEEEECCCcHHHHH-----H-HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 2368899999999643221 1 0112337899999999986532222 2222211 123568899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
... ....+....+.+.. .....+...+|++.|.| ++++++.+.+.+...
T Consensus 437 ~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~SA~~g~g-i~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 437 DAM-KPHEIQEKLGLTRI----------RDRNWYVQPSCATSGDG-LYEGLTWLTSNYKSK 485 (497)
T ss_dssp SCC-CHHHHHHHTTCTTC----------CSSCEEEEECBTTTTBT-HHHHHHHHHHHCC--
T ss_pred cCC-CHHHHHHHhchhhh----------hcCCeEEEEEECCCCCC-HHHHHHHHHHHHHhc
Confidence 432 11222222222110 01122456799999999 999999999988543
No 167
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.92 E-value=1.6e-09 Score=97.81 Aligned_cols=152 Identities=14% Similarity=0.042 Sum_probs=81.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... + ..+..+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~------~~~~~~~~~----~-----------t~~~~~~~~~~~-------------~~ 70 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFI------ENKFKQDSN----H-----------TIGVEFGSRVVN-------------VG 70 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------C---------------------------CCEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCCccCC----C-----------cccceeEEEEEE-------------EC
Confidence 4679999999999999999998 433211100 0 001111000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHH---hccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF---KQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f---~~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||..... .+. ......+|.+++|+|++..... ......+ ...-.+..+|+||+|...
T Consensus 71 ~~~~~l~l~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFR-----SVT-RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp TEEEEEEEECCTTHHHHS-----CCC-HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred CeeeEEEEEcCCCcHhHH-----HHH-HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 113688999999942110 000 0112367999999999865321 1122222 112234688999999843
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 145 ~~~v~~~~~~~~~~~~~------------------~~~~~~SA~~g~g-i~~l~~~l~~~i 186 (200)
T 2o52_A 145 EREVTFLEASRFAQENE------------------LMFLETSALTGEN-VEEAFLKCARTI 186 (200)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEEECTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 11111221111 2345589999999 999999887654
No 168
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.92 E-value=6.2e-10 Score=99.41 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|... ......... .+..+..... ...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~t-----------------~~~~~~~~~~-------------~~~ 68 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD----TFTPAFVST-----------------VGIDFKVKTV-------------YRH 68 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH----TTCCCEEEE-----------------ETTTEEEEEE-------------EET
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC----CCCcccCCC-----------------eeeEEEEEEE-------------EEC
Confidence 467999999999999999999821 111111110 0111110000 000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
..++.+.|+||||..... .+. ......+|.+++|+|++.... .......+.. .-.+..+|.||+|...
T Consensus 69 ~~~~~~~i~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYR-----TIT-TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp TTTEEEEEECHHHHHHCH-----HHH-HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred CEEEEEEEEeCCChHHHH-----HHH-HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 125678999999943211 111 112336799999999975422 1112222222 2235688899999743
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..........+ .+...+|+..|.| ++++++.+.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i 184 (191)
T 3dz8_A 143 ERVVPTEKGQLLAEQLG------------------FDFFEASAKENIS-VRQAFERLVDAI 184 (191)
T ss_dssp GCCSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CeEEEEECCCCCC-HHHHHHHHHHHH
Confidence 21 11111222222 1345689999999 999999887654
No 169
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.91 E-value=4.7e-09 Score=95.22 Aligned_cols=114 Identities=19% Similarity=0.144 Sum_probs=62.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. .. .+.+ ....++......
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~------~~~~--~~--~~~~------------~~~~~~~~~~~~-------------- 50 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLL------TGQY--RD--TQTS------------ITDSSAIYKVNN-------------- 50 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHH------HSCC--CC--BCCC------------CSCEEEEEECSS--------------
T ss_pred CCEEEEECCCCCCHHHHHHHHh------CCCc--cc--ccCC------------cceeeEEEEecC--------------
Confidence 4679999999999999999998 3221 00 0100 001111000000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh-HHHHHHHHh---------ccCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA-AFDQAQAFK---------QSVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~-~~~~a~~f~---------~~~~~~~vIlnK~ 250 (411)
..++.+.|+||||...... .+... ....+|.+++|+|++.... .......+. ..-.+..+|.||+
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~----~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRF----QLLDR-FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125 (214)
T ss_dssp TTCCEEEEEECCCCHHHHH----HHHHH-HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECT
T ss_pred CCccEEEEEECCCChhHHH----HHHHH-HHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECC
Confidence 0157899999999742221 11111 1335789999999976322 111111111 1123568899999
Q ss_pred CCCCC
Q 015221 251 DGHAK 255 (411)
Q Consensus 251 D~~~~ 255 (411)
|+...
T Consensus 126 Dl~~~ 130 (214)
T 2fh5_B 126 DIAMA 130 (214)
T ss_dssp TSTTC
T ss_pred CCCCc
Confidence 98644
No 170
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=4e-09 Score=94.52 Aligned_cols=151 Identities=12% Similarity=0.076 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. ..+.+. .+..+..... .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~ 71 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFL------TKRFI----WEYDPT-----------LESTYRHQAT--------------I 71 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH------HSCCC----SCCCTT-----------CCEEEEEEEE--------------E
T ss_pred CceEEEEECCCCCCHHHHHHHHH------hCCCC----cccCCC-----------CCceEEEEEE--------------E
Confidence 34679999999999999999998 33221 011110 0000000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HH---HHHHHHhc-cCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AF---DQAQAFKQ-SVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~---~~a~~f~~-~~~~~~vIlnK~D~ 252 (411)
....+.+.|+||||... . .+. . .....+|.+++|+|++.... .. .....+.. .-.+..+|.||+|.
T Consensus 72 ~~~~~~~~l~Dt~G~~~-~-~~~---~--~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 72 DDEVVSMEILDTAGQED-T-IQR---E--GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp TTEEEEEEEEECCCCCC-C-HHH---H--HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred CCEEEEEEEEECCCCCc-c-cch---h--hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 01246789999999865 1 111 1 11224699999999976422 11 12222221 12346889999998
Q ss_pred CCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCC-CCHHHHHHHHHhhC
Q 015221 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGM-GDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~-Gdi~~L~e~i~~~~ 311 (411)
.... ..+.......+ .+...+|+..|. | ++.+++.+.+.+
T Consensus 145 ~~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~g~~g-i~~l~~~l~~~i 189 (196)
T 2atv_A 145 DHSRQVSTEEGEKLATELA------------------CAFYECSACTGEGN-ITEIFYELCREV 189 (196)
T ss_dssp GGGCCSCHHHHHHHHHHHT------------------SEEEECCTTTCTTC-HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhC------------------CeEEEECCCcCCcC-HHHHHHHHHHHH
Confidence 5421 11111111111 234568999999 8 999999887654
No 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.91 E-value=5.9e-09 Score=94.79 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHhc-------cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFKQ-------SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~~-------~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|+||||... +.... ......+|.+++|+|++...........+.. .-.+..+|+||+|....
T Consensus 83 ~~~l~l~Dt~G~~~----~~~~~--~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 83 KVHLQLWDTAGQER----FRSLT--TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EEEEEEEEEESHHH----HHHHH--HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred eEEEEEEECCCcHh----HHhHH--HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 46789999999421 11111 1223367999999999865432222222221 11346788999998432
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ..+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 157 ~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-i~~l~~~l~~~i 197 (217)
T 2f7s_A 157 REVNERQARELADKYG------------------IPYFETSAATGQN-VEKAVETLLDLI 197 (217)
T ss_dssp CCSCHHHHHHHHHHTT------------------CCEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCC------------------CcEEEEECCCCCC-HHHHHHHHHHHH
Confidence 1 11111222112 2345688999999 999998887665
No 172
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.91 E-value=8.5e-10 Score=99.12 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=58.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.++...+. +.+ ..++.++..... ..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~------~~~~~~~~~--~~~-----------t~~~~~~~~~~~-------------~~ 67 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFT------SKGSKFLKD--YAM-----------TSGVEVVVAPVT-------------IP 67 (208)
T ss_dssp EEEEEEC-----------------------------------------------------CEEEE-------------CT
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCcccCC--CCC-----------ccceEEEEEEEE-------------EC
Confidence 4579999999999999999998 432222111 000 000000000000 00
Q ss_pred cC--CCCEEEEeCCCCCcchHHHHHHHHHHHH--hcCCCeeEEEeeCcchhhH---HHHHHHHhc------cCCceEEEE
Q 015221 181 KE--NCDLIIVDTSGRHKQEAALFEEMRQVSE--ATNPDLVIFVMDSSIGQAA---FDQAQAFKQ------SVSVGAVIV 247 (411)
Q Consensus 181 ~~--~~d~viIDTaG~~~~~~~l~~el~~i~~--~~~~d~vllVvda~~g~~~---~~~a~~f~~------~~~~~~vIl 247 (411)
.. .+.+.|+||||.... ..+.. ...+|.+++|+|++.+... ......+.. .-.+..+|+
T Consensus 68 ~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 68 DTTVSVELFLLDTAGSDLY--------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp TSSEEEEEEEEETTTTHHH--------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred CcccEEEEEEEECCCcHHH--------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 11 367899999997321 11121 2367999999999865321 112222222 123568899
Q ss_pred eCCCCCC-Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhc-CCCCHHHHHHHHHhhC
Q 015221 248 TKMDGHA-KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL-GMGDWSGFMDKIHEVV 311 (411)
Q Consensus 248 nK~D~~~-~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~-g~Gdi~~L~e~i~~~~ 311 (411)
||+|... .. ..+.......+ .+...+|+.. |.| ++.+++.+.+.+
T Consensus 140 nK~Dl~~~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~g-i~~l~~~i~~~~ 190 (208)
T 2yc2_C 140 NKTDLPPQRHQVRLDMAQDWATTNT------------------LDFFDVSANPPGKD-ADAPFLSIATTF 190 (208)
T ss_dssp ECC-------CCCHHHHHHHHHHTT------------------CEEEECCC--------CHHHHHHHHHH
T ss_pred ECcccchhhccCCHHHHHHHHHHcC------------------CEEEEeccCCCCcC-HHHHHHHHHHHH
Confidence 9999854 21 11112222111 2345688899 999 999999887765
No 173
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.91 E-value=1.1e-09 Score=99.25 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++.|. +.+..- .+.+. .+..+..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~~----~~~~t-----------~~~~~~~~~~--------------~~ 69 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFS------KDEFPE----VYVPT-----------VFENYVADIE--------------VD 69 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSCC----------------------CCEEEEEEE--------------ET
T ss_pred CcEEEEECcCCCCHHHHHHHHh------cCCCCC----cCCCc-----------ccceEEEEEE--------------EC
Confidence 4579999999999999999998 332210 01110 0111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--H--HHHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--F--DQAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~--~~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++..... . .....+... -.+..+|+||+|+..
T Consensus 70 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 70 GKQVELALWDTAGQEDYDR-----LR-PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp TEEEEEEEEECTTCTTCTT-----TG-GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHHHHH-----HH-HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhc
Confidence 1236789999999753221 10 0112367999999998764321 1 112222221 234688999999865
Q ss_pred ChhhHHHHHHhcCC-CeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~-Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .......... .+. ...++....-....+...+|+..|.| ++++++.+.+.+
T Consensus 144 ~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~SA~~g~g-i~el~~~l~~~i 198 (207)
T 2fv8_A 144 DEH-VRTELARMKQEPVR-TDDGRAMAVRIQAYDYLECSAKTKEG-VREVFETATRAA 198 (207)
T ss_dssp CHH-HHHHHHHTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccc-chhhhhhcccCCCC-HHHHHHHHHhcCCCEEEEeeCCCCCC-HHHHHHHHHHHH
Confidence 421 1111111110 000 00001110001112445689999999 999999987765
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.91 E-value=1e-08 Score=101.58 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=48.2
Q ss_pred CCCEEEEeCCCCCcc-----hHHHHHHHHHHHH--hcCCCeeEEEeeCcch----hhHHHHHHHHhccCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVSE--ATNPDLVIFVMDSSIG----QAAFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~-----~~~l~~el~~i~~--~~~~d~vllVvda~~g----~~~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
..++.|+||||.... .......+..+.. ...+|.+++|+|++.. ++....+..+.....+..+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 468999999997543 1122222322222 3378989999986421 2334455555443346788999999
Q ss_pred CCCChhhHHHHH
Q 015221 252 GHAKGGGALSAV 263 (411)
Q Consensus 252 ~~~~~g~~l~~~ 263 (411)
...+........
T Consensus 215 l~~~~~~~~~~~ 226 (360)
T 3t34_A 215 LMDKGTDAVEIL 226 (360)
T ss_dssp GCCTTCCSHHHH
T ss_pred cCCCcccHHHHH
Confidence 876544444433
No 175
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.90 E-value=7.7e-10 Score=100.78 Aligned_cols=158 Identities=14% Similarity=0.014 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCce-EeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA-LVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~-lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
....|+++|.+||||||++++|. +.+.. -... ..+..........+
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~~----------------t~~~~~~~~~~~~~----------- 56 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVL------DGRFEKNYNA----------------TVGAVNHPVTFLDD----------- 56 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCT------TCSTTCEEET----------------TTTEEEEEEEEEBT-----------
T ss_pred CccEEEEECCCCCCHHHHHHHHh------cCCCCCCCCC----------------ccceeeEEEEEEeC-----------
Confidence 34679999999999999999998 54321 0000 01111110000000
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---H---HHHHHhccCCceEEEEeCCCC
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---D---QAQAFKQSVSVGAVIVTKMDG 252 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~---~a~~f~~~~~~~~vIlnK~D~ 252 (411)
....+.+.|+||||...... +. ......+|.+++|+|++.+.... . ........-.+..+|+||+|.
T Consensus 57 -~~~~~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 57 -QGNVIKFNVWDTAGQEKKAV-----LK-DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp -TSCEEEEEEEEECSGGGTSC-----CC-HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred -CCcEEEEEEEecCCchhhch-----HH-HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 00126789999999642211 00 01123679999999998653221 1 122222222346889999998
Q ss_pred CCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 253 HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 253 ~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.............. .. ....+...+|+..|.| ++.+++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~------------~~--~~~~~~~~~Sa~~g~g-v~~l~~~l~~~~~ 174 (218)
T 4djt_A 130 KNRQKISKKLVMEV------------LK--GKNYEYFEISAKTAHN-FGLPFLHLARIFT 174 (218)
T ss_dssp C----CCHHHHHHH------------TT--TCCCEEEEEBTTTTBT-TTHHHHHHHHHHH
T ss_pred ccccccCHHHHHHH------------HH--HcCCcEEEEecCCCCC-HHHHHHHHHHHHh
Confidence 54311111111100 00 0122456689999999 9999998887763
No 176
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.90 E-value=4.1e-09 Score=95.66 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. . .+.+ ..+..+...... ..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~------~~~~~---~-~~~~-----------t~~~~~~~~~~~-------------~~ 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFT------QGLFP---P-GQGA-----------TIGVDFMIKTVE-------------IN 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC---T-TCCC-----------CCSEEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHH------hCCCC---C-CCCC-----------ccceeEEEEEEE-------------EC
Confidence 3579999999999999999998 32211 0 0000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh---ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~---~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||..... .+ .......+|.+++|+|++..... ......+. ....+..+|.||+|...
T Consensus 72 ~~~~~l~l~Dt~G~~~~~-----~~-~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFR-----SI-TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp TEEEEEEEEEECCSGGGH-----HH-HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCcHHHH-----HH-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 113678999999964321 11 11123368999999999765321 11122222 22234678899999853
Q ss_pred Chh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 146 ~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~g~g-v~~l~~~l~~~i 187 (201)
T 2ew1_A 146 RREVSQQRAEEFSEAQD------------------MYYLETSAKESDN-VEKLFLDLACRL 187 (201)
T ss_dssp GCSSCHHHHHHHHHHHT------------------CCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 211 1111111111 2345689999999 999999887655
No 177
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.90 E-value=4e-09 Score=100.52 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
+....|+++|.+|+||||++|.|. +.++...+. ++....+ ....++.+.......+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~------~~~~~~~~~----~~~~~~~---~~t~~~~~~~~~~~~~----------- 61 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLF------LTDLYSPEY----PGPSHRI---KKTVQVEQSKVLIKEG----------- 61 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHS------SSCC----------------------CCCEEEEEEECC------------
T ss_pred ccEEEEEEECCCCCCHHHHHHHHh------CCCccccCC----CCccccc---CCceEEEEEEEEEecC-----------
Confidence 334679999999999999999998 766554432 1100000 0111121111000000
Q ss_pred HhcCCCCEEEEeCCCCCcc------hHHHHHHH----HHHHHh-----------cCCCeeEEEeeCcc-h--hhHHHHHH
Q 015221 179 FKKENCDLIIVDTSGRHKQ------EAALFEEM----RQVSEA-----------TNPDLVIFVMDSSI-G--QAAFDQAQ 234 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~------~~~l~~el----~~i~~~-----------~~~d~vllVvda~~-g--~~~~~~a~ 234 (411)
...+.+.|+||||.... ...+...+ ...... ..+|.++++++++. + .......+
T Consensus 62 --~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~ 139 (274)
T 3t5d_A 62 --GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK 139 (274)
T ss_dssp ---CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHH
T ss_pred --CeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHH
Confidence 01247899999997321 11221111 111110 13567888886653 3 23333455
Q ss_pred HHhccCCceEEEEeCCCCCCChhhH------HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHH
Q 015221 235 AFKQSVSVGAVIVTKMDGHAKGGGA------LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIH 308 (411)
Q Consensus 235 ~f~~~~~~~~vIlnK~D~~~~~g~~------l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~ 308 (411)
.+... .+..+|+||+|........ ...+...+.| ...+|+..|.| ++.+.+.+.
T Consensus 140 ~l~~~-~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~------------------v~~~sa~~~~~-~~~l~~~l~ 199 (274)
T 3t5d_A 140 RLHEK-VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK------------------IYEFPETDDEE-ENKLVKKIK 199 (274)
T ss_dssp HHTTT-SCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC------------------CCCC------------CHHHH
T ss_pred HHhcc-CCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe------------------EEcCCCCCChh-HHHHHHHHh
Confidence 55553 3568899999986432111 0111112222 23356677777 777777777
Q ss_pred hhCC
Q 015221 309 EVVP 312 (411)
Q Consensus 309 ~~~~ 312 (411)
+.++
T Consensus 200 ~~~p 203 (274)
T 3t5d_A 200 DRLP 203 (274)
T ss_dssp HTCS
T ss_pred cCCC
Confidence 7664
No 178
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.90 E-value=4.2e-09 Score=92.78 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=64.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. .. +.+ ..+..+...... ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~------~~~~~-~~---~~~-----------t~~~~~~~~~~~-------------~~ 53 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS------EDAFN-ST---FIS-----------TIGIDFKIRTIE-------------LD 53 (183)
T ss_dssp EEEEEEECCCCC-----------------------C---HHH-----------HHCEEEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCC-CC---CCC-----------cccceeEEEEEE-------------EC
Confidence 3569999999999999999998 32211 00 000 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||..... .+. ......+|.+++|+|++...... .....+.. .-.+..+|.||+|...
T Consensus 54 ~~~~~~~l~Dt~G~~~~~-----~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 54 GKRIKLQIWDTAGQERFR-----TIT-TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp TEEEEEEEEEC--------------C-CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred CEEEEEEEEcCCCChhhh-----hhH-HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 113678999999964211 110 01123679999999998653211 12222222 1235688999999854
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..+.......+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 128 ~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-i~~l~~~l~~~i 169 (183)
T 2fu5_C 128 KRQVSKERGEKLALDYG------------------IKFMETSAKANIN-VENAFFTLARDI 169 (183)
T ss_dssp CCCSCHHHHHHHHHHHT------------------CEEEECCC---CC-HHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHcC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 21 11112222112 2345689999999 999999887765
No 179
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.90 E-value=1.9e-09 Score=106.37 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh-cCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~-~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
.|+|+|.|||||||++++|. +.++.+-+. ++ ++. ..+.++.. .
T Consensus 160 ~V~lvG~~nvGKSTLln~L~------~~~~~i~~~-~f-----------tTl~p~~g~v~~------------------~ 203 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVS------SAKPKIADY-HF-----------TTLVPNLGMVET------------------D 203 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSE------EECCEESST-TS-----------SCCCCCEEEEEC------------------S
T ss_pred eeeeeCCCCCCHHHHHHHHH------cCCCccccC-Cc-----------cccCceEEEEEe------------------C
Confidence 48999999999999999998 555443221 11 110 11111110 0
Q ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHhcCCCeeEEEeeCcc---h--hhHHH-HHHHHhc-----cCCceEEEE
Q 015221 182 ENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSI---G--QAAFD-QAQAFKQ-----SVSVGAVIV 247 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvda~~---g--~~~~~-~a~~f~~-----~~~~~~vIl 247 (411)
.+..++|+||||.... ...+.... +.....++.+++|+|++. . ..... ....+.. .-.+..+|+
T Consensus 204 ~~~~~~l~DtPG~i~~a~~~~~l~~~f--l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~ 281 (342)
T 1lnz_A 204 DGRSFVMADLPGLIEGAHQGVGLGHQF--LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 281 (342)
T ss_dssp SSCEEEEEEHHHHHHHTTCTTTTHHHH--HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred CCceEEEecCCCCcccccccchhHHHH--HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence 1367999999995321 11111111 112224699999999964 1 12222 1222221 123468899
Q ss_pred eCCCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCCC
Q 015221 248 TKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMD 314 (411)
Q Consensus 248 nK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~~ 314 (411)
||+|..........+... +....+...+|+..|.| +++|++.+.+.+.+.
T Consensus 282 NK~Dl~~~~e~~~~l~~~----------------l~~~~~v~~iSA~tg~g-i~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 282 NKMDMPEAAENLEAFKEK----------------LTDDYPVFPISAVTREG-LRELLFEVANQLENT 331 (342)
T ss_dssp ECTTSTTHHHHHHHHHHH----------------CCSCCCBCCCSSCCSST-THHHHHHHHHHHTSC
T ss_pred ECccCCCCHHHHHHHHHH----------------hhcCCCEEEEECCCCcC-HHHHHHHHHHHHhhC
Confidence 999986432111111111 11113456799999999 999999998887543
No 180
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=98.90 E-value=3.8e-09 Score=106.24 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHHHHH------HcCCCceEeccCcCc
Q 015221 99 GKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lv-G~~GvGKTTl~~kLa~~l~------~~g~kv~lV~~D~~r 141 (411)
.++++|+++ |..|+||||++.+||..|+ ++|++|++||+|++.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 456888888 6669999999999999998 679999999999865
No 181
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.89 E-value=4.4e-09 Score=103.14 Aligned_cols=154 Identities=18% Similarity=0.091 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. .. .| ..+..+.. +.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~------~~~~~--~~---~p-----------T~~~~~~~-----------------~~ 205 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLK------LGEIV--TT---IP-----------TIGFNVET-----------------VE 205 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTC------SSCCE--EE---EE-----------ETTEEEEE-----------------EE
T ss_pred cceEEEECCCCccHHHHHHHHh------CCCCC--Cc---cc-----------ccceEEEE-----------------Ee
Confidence 4579999999999999999997 54421 11 01 01111111 11
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHH-hcc---CCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAF-KQS---VSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f-~~~---~~~~~vIlnK~D~~ 253 (411)
..++.+.|+||||...... +. ......+|.+++|+|++..... ......+ ... -.+..+|+||+|..
T Consensus 206 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 206 YKNISFTVWDVGGQDKIRP-----LW-RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp ETTEEEEEEECC-----CC-----SH-HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCcEEEEEEECCCCHhHHH-----HH-HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 2357889999999532211 10 1112357999999999754221 1122222 111 23468889999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccc-cCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
... ....+....+.. ... ...+...+|++.|.| ++++++.+.+.+.
T Consensus 280 ~~~-~~~~i~~~~~~~-----------~~~~~~~~~~~vSAk~g~g-i~el~~~l~~~l~ 326 (329)
T 3o47_A 280 NAM-NAAEITDKLGLH-----------SLRHRNWYIQATCATSGDG-LYEGLDWLSNQLR 326 (329)
T ss_dssp TCC-CHHHHHHHHTCT-----------TCCSSCEEEEECBTTTTBT-HHHHHHHHHHHHT
T ss_pred ccc-CHHHHHHHhchh-----------hhhcCCCEEEEEECCCCcC-HHHHHHHHHHHHH
Confidence 432 112222222211 011 112345689999999 9999999987763
No 182
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.89 E-value=5.8e-09 Score=107.59 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+|+||||++++|. |..... ..|.+ .. ....++...... ..+.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~------~~~~~~-~~d~~--------~~-e~~~GiTi~~~~-------------~~~~ 69 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLT------EIASTS-AHDKL--------PE-SQKRGITIDIGF-------------SAFK 69 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TTC------------------------------CC-------------CEEE
T ss_pred CCEEEEECCCCChHHHHHHHHH------CCCccc-ccccc--------cc-cccCccEEecce-------------EEEE
Confidence 4679999999999999999998 543110 01110 00 000111100000 0011
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHh-ccCCceEEEEeCCCCCCChh
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFK-QSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~-~~~~~~~vIlnK~D~~~~~g 257 (411)
.+++.+.|+||||.. ++...+ ......+|.+++|+|++.|. ...+.+.... ..++. .+|+||+|......
T Consensus 70 ~~~~~i~iiDtPGh~----~~~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~~ 142 (482)
T 1wb1_A 70 LENYRITLVDAPGHA----DLIRAV--VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTEE 142 (482)
T ss_dssp ETTEEEEECCCSSHH----HHHHHH--HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCHHH
T ss_pred ECCEEEEEEECCChH----HHHHHH--HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccchh
Confidence 235789999999962 233332 23344789999999998742 1222222222 22444 88999999864311
Q ss_pred h--HHHHHHhcCCCeEEeccccccccc--ccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 G--ALSAVAATKSPVIFIGTGEHMDEF--EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ~--~l~~~~~~g~Pi~fi~~Ge~i~~l--~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ...... +.+... ....|..++|++.|.| ++.|++.+.+.+
T Consensus 143 ~~~~~~~l~------------~~l~~~~~~~~~~ii~vSA~~g~g-I~~L~~~L~~~i 187 (482)
T 1wb1_A 143 IKRTEMIMK------------SILQSTHNLKNSSIIPISAKTGFG-VDELKNLIITTL 187 (482)
T ss_dssp HHHHHHHHH------------HHHHHSSSGGGCCEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHHhhhcccccceEEEEECcCCCC-HHHHHHHHHHhh
Confidence 0 111110 000000 0124567789999999 999999998864
No 183
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.89 E-value=4.6e-09 Score=97.68 Aligned_cols=121 Identities=22% Similarity=0.251 Sum_probs=66.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|++||||||+++.|. |.++..... +. ...+..... .. .
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~------g~~~~~~~~----~~------~~~t~~~~~-~~-----------------~ 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSIL------GRKVFHSGT----AA------KSITKKCEK-RS-----------------S 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------TSCCSCC-----------------CCSCEE-EE-----------------E
T ss_pred CceEEEEECCCCCCHHHHHHHHc------CCCcCccCC----CC------CceeeeEEE-EE-----------------E
Confidence 34679999999999999999999 765521111 00 000110000 00 0
Q ss_pred hcCCCCEEEEeCCCCCcch---HHHHHHHHHHHH--hcCCCeeEEEeeCcchh-hHHHHHH----HHhc-cCCceEEEEe
Q 015221 180 KKENCDLIIVDTSGRHKQE---AALFEEMRQVSE--ATNPDLVIFVMDSSIGQ-AAFDQAQ----AFKQ-SVSVGAVIVT 248 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~---~~l~~el~~i~~--~~~~d~vllVvda~~g~-~~~~~a~----~f~~-~~~~~~vIln 248 (411)
...+..+.|+||||..... .+...++..... ...+|.+++|+|++... ....... .|.. ...+..+|+|
T Consensus 74 ~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~n 153 (239)
T 3lxx_A 74 SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFT 153 (239)
T ss_dssp EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEe
Confidence 1235688999999976432 223334433322 22679999999986432 1122222 2222 1235788999
Q ss_pred CCCCCC
Q 015221 249 KMDGHA 254 (411)
Q Consensus 249 K~D~~~ 254 (411)
|+|...
T Consensus 154 K~D~~~ 159 (239)
T 3lxx_A 154 RKDDLG 159 (239)
T ss_dssp CGGGC-
T ss_pred CCccCC
Confidence 999754
No 184
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=98.89 E-value=6.9e-09 Score=104.13 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=38.0
Q ss_pred CCCCeEEEEE-cCCCCcHHHHHHHHHHHHH------HcCCCceEeccCcCc
Q 015221 98 KGKPSVIMFV-GLQGSGKTTTCTKYAYYHQ------KKGWKPALVCADTFR 141 (411)
Q Consensus 98 ~~~~~vI~lv-G~~GvGKTTl~~kLa~~l~------~~g~kv~lV~~D~~r 141 (411)
...+++|+++ |..|+||||++.+||..|+ ++|++|++||+|++.
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 3457888888 6669999999999999998 479999999999964
No 185
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.89 E-value=1.1e-09 Score=96.55 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~~~ 256 (411)
.+.+.|+||||...... +. ......+|.+++|+|++.+....+ ....+... -.+..+|+||+|.....
T Consensus 52 ~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDR-----LR-PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEEECCCCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred EEEEEEEECCCCHhHHH-----HH-HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence 45678999999743211 10 011236799999999986532111 12222221 23468899999985442
Q ss_pred hhHHHHHHhcCC-CeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 257 GGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 257 g~~l~~~~~~g~-Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.. ......... .+. ...++.+..-..+.+...+|+..|.| ++.+++.+.+.+.+
T Consensus 126 ~~-~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 126 DT-IEKLKEKKLTPIT-YPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAVLC 180 (186)
T ss_dssp HH-HHHHHHTTCCCCC-HHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHHSC
T ss_pred hh-hhhhcccccccCC-HHHHHHHHHhcCCcEEEEecCCCccC-HHHHHHHHHHHHhc
Confidence 11 111111100 000 00001110001123556799999999 99999999887643
No 186
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.89 E-value=2.8e-09 Score=93.95 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.... -. +.+ ..+..+..... .
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~------~~~~~-~~---~~~-----------t~~~~~~~~~~--------------~ 61 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFF------QKIFV-DD---YDP-----------TIEDSYLKHTE--------------I 61 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH------HSCCC-SC---CCT-----------TCCEEEEEEEE--------------E
T ss_pred CceEEEEECCCCCCHHHHHHHHH------hCCCC-CC---CCC-----------CccceeEEEEE--------------e
Confidence 34679999999999999999998 22110 01 101 00011000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHH---h-ccCCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAF---K-QSVSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f---~-~~~~~~~vIlnK~D~ 252 (411)
....+.+.++||||........ .. ....+|.+++|+|++.... .......+ . ..-.+..+|.||+|.
T Consensus 62 ~~~~~~l~i~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 62 DNQWAILDVLDTAGQEEFSAMR----EQ--YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp TTEEEEEEEEECCSCGGGCSSH----HH--HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred CCcEEEEEEEECCCchhhHHHH----HH--HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 0113456679999964322111 11 1124699999999986522 11111111 1 122346889999997
Q ss_pred CCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhh-cCCCCHHHHHHHHHhhC
Q 015221 253 HAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~-~g~Gdi~~L~e~i~~~~ 311 (411)
.... ..........+ .+...+|+. .|.| ++++++.+.+.+
T Consensus 136 ~~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~~-v~~l~~~l~~~i 180 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMATKYN------------------IPYIETSAKDPPLN-VDKTFHDLVRVI 180 (183)
T ss_dssp STTCCSCHHHHHHHHHHHT------------------CCEEEEBCSSSCBS-HHHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHhC------------------CeEEEeccCCCCCC-HHHHHHHHHHHH
Confidence 5421 11222222222 234557888 8899 999999887654
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.89 E-value=8.6e-09 Score=93.08 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=83.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCC-ceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWK-PALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~k-v~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
+...|+++|++||||||+++.|+ |.. +..+... ...+.. ...+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~------g~~~~~~~~~~-----------~G~~~~-~~~~~----------------- 69 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT------NQKSLARTSKT-----------PGRTQL-INLFE----------------- 69 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC------CC------------------------CC-EEEEE-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHh------CCCccccccCC-----------Ccccee-eEEEE-----------------
Confidence 34679999999999999999998 654 2222220 000000 00000
Q ss_pred HhcCCCCEEEEeCCCCCcch------HHHHHHHHHHHH-hcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeC
Q 015221 179 FKKENCDLIIVDTSGRHKQE------AALFEEMRQVSE-ATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTK 249 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~------~~l~~el~~i~~-~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK 249 (411)
..+ .+.++||||..... ..+...+..... ....+.+++|.|++.+.... ...........+..+|.||
T Consensus 70 --~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 70 --VAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp --EET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred --ecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec
Confidence 012 57899999975321 111111212221 12457788999987642221 1222222211234567999
Q ss_pred CCCCCChhhH--HHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 250 MDGHAKGGGA--LSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 250 ~D~~~~~g~~--l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
+|....+... +.... ..+.+.....+..++|++.+.| ++.+++.+.+...+
T Consensus 147 ~D~~s~~~~~~~~~~~~------------~~~~~~~~~~~~~~~Sal~~~~-~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 147 ADKLASGARKAQLNMVR------------EAVLAFNGDVQVETFSSLKKQG-VDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGSCHHHHHHHHHHHH------------HHHGGGCSCEEEEECBTTTTBS-HHHHHHHHHHHHC-
T ss_pred ccCCCchhHHHHHHHHH------------HHHHhcCCCCceEEEeecCCCC-HHHHHHHHHHHHhh
Confidence 9976532111 11111 0011111223456789999999 99999999887644
No 188
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.1e-09 Score=98.70 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=82.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+...... . ..+..+...... ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~------~~~~~~~~~-----------~----t~~~~~~~~~~~-------------~~ 58 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFT------KNEFNMDSK-----------S----TIGVEFATRTLE-------------IE 58 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHH------HCCCCC---------------------CCSEEEEEEE-------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCCCCCCC-----------C----cccceeEEEEEE-------------EC
Confidence 3579999999999999999998 433221111 0 011111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHhc---cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFKQ---SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~~---~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++....... ....+.. .-.+..+|+||+|+..
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 59 GKRIKAQIWDTAGQERYRA-----IT-SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TEEEEEEEECCTTTTTTTC-----CC-GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred CEEEEEEEEECCCccchhh-----hH-HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1136789999999643211 00 011236789999999986532211 1222221 1234678899999853
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.. ..+.......+ .+...+|+..|.| ++.+++.+.+.+.
T Consensus 133 ~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~g-i~~l~~~l~~~i~ 175 (223)
T 3cpj_B 133 LRAVPTEESKTFAQENQ------------------LLFTETSALNSEN-VDKAFEELINTIY 175 (223)
T ss_dssp GCCSCHHHHHHHHHHTT------------------CEEEECCCC-CCC-HHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHHH
Confidence 21 11111111111 2345589999999 9999999887764
No 189
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.89 E-value=2.9e-09 Score=109.77 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHh-ccCCceEEEEeCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~-~~~~~~~vIlnK~D 251 (411)
.++.+.|+||||...... .+ ......+|.+++|+|++.+. .......... ...++..+|+||+|
T Consensus 109 ~~~~~~iiDTPG~~~f~~----~~--~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~D 182 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVP----NA--IMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD 182 (483)
T ss_dssp SSCEEEEECCCCCGGGHH----HH--HHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGG
T ss_pred CCceEEEEECCCcHHHHH----HH--HHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcC
Confidence 468899999999854322 22 22334789999999998751 1112222222 12344678899999
Q ss_pred CCC
Q 015221 252 GHA 254 (411)
Q Consensus 252 ~~~ 254 (411)
...
T Consensus 183 l~~ 185 (483)
T 3p26_A 183 NVD 185 (483)
T ss_dssp GGT
T ss_pred ccc
Confidence 864
No 190
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.88 E-value=9.1e-09 Score=108.50 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHH-HHHhccCCceEEEEeCCCCCCCh-hh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQA-QAFKQSVSVGAVIVTKMDGHAKG-GG 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a-~~f~~~~~~~~vIlnK~D~~~~~-g~ 258 (411)
.+.+.|+||||...... ++... ...+|.+++|+|++.|.... ... ......+ +..+|+||+|..... ..
T Consensus 72 ~~~inliDTPGh~dF~~----ev~r~--l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~i-piIvviNKiDl~~a~~~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSY----EVSRA--LAACEGALLLIDASQGIEAQTVANFWKAVEQDL-VIIPVINKIDLPSADVDR 144 (600)
T ss_dssp EEEEEEECCCCSGGGHH----HHHHH--HHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTC-EEEEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCcHhHHH----HHHHH--HHhCCEEEEEEECCCCccHHHHHHHHHHHHCCC-CEEEEEeccCccccCHHH
Confidence 36788999999865433 22221 23679999999998763222 222 2222223 468889999985432 11
Q ss_pred HHHHH-HhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 259 ALSAV-AATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 259 ~l~~~-~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
..... ...+.+ ..+..++|++.|.| ++.|++.+.+.++.
T Consensus 145 v~~el~~~lg~~---------------~~~vi~vSAktg~G-I~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 145 VKKQIEEVLGLD---------------PEEAILASAKEGIG-IEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHTSCCC---------------GGGCEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCC---------------cccEEEEEeecCCC-chHHHHHHHHhccc
Confidence 12211 111110 12356799999999 99999999998864
No 191
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=98.88 E-value=9e-09 Score=101.79 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH--HcCCCceEeccCcC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTF 140 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~--~~g~kv~lV~~D~~ 140 (411)
.+++++.|..|+||||++.+||.+++ +.|++|++|++|+.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 46778889999999999999999999 89999999999963
No 192
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.86 E-value=5.1e-10 Score=100.91 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. .. +.+. .+..+..... .
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~-~~---~~~t-----------~~~~~~~~~~--------------~ 67 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFV------EGEFS-EG---YDPT-----------VENTYSKIVT--------------L 67 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH------HSCCC-SC---CCCC-----------SEEEEEEEEC---------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHH------hCCCC-CC---CCCc-----------cceEEEEEEE--------------E
Confidence 34679999999999999999998 43322 00 1000 0001000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc----CCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~----~~~~~vIlnK~D~ 252 (411)
....+.+.|+||||...... + .......+|.+++|+|++..... ......+... -.+..+|+||+|.
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 141 (201)
T 3oes_A 68 GKDEFHLHLVDTAGQDEYSI-----L-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141 (201)
T ss_dssp ---CEEEEEEEECCCCTTCC-----C-CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTC
T ss_pred CCEEEEEEEEECCCccchHH-----H-HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 01357789999999643211 0 00112367999999999854321 1222233221 1346889999997
Q ss_pred CCChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 253 HAKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... .........+ .+...+|+..|.| ++++++.+.+.+
T Consensus 142 ~~~~~v~~~~~~~~~~~~~------------------~~~~~~Sa~~~~~-v~~l~~~l~~~i 185 (201)
T 3oes_A 142 SPEREVQAVEGKKLAESWG------------------ATFMESSARENQL-TQGIFTKVIQEI 185 (201)
T ss_dssp GGGCCSCHHHHHHHHHHHT------------------CEEEECCTTCHHH-HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhC------------------CeEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 53211 1111222122 2345588999999 999999887766
No 193
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.86 E-value=1.7e-09 Score=112.65 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
++.+|+++|.+|+||||++++|...-........ ++.| +..+....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~g-iT~~------------------i~~~~v~~--------------- 48 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGG-ITQH------------------IGAFLVSL--------------- 48 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCC-BCCC------------------TTSCCBCS---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-eeEE------------------EeEEEEEe---------------
Confidence 3567999999999999999999843222111110 0000 10000000
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCCh-
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG- 256 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~- 256 (411)
..+..+.|+||||....... + ......+|.+++|+|++.+. ............-.+..+++||+|.....
T Consensus 49 -~~g~~i~~iDTPGhe~f~~~----~--~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~ 121 (537)
T 3izy_P 49 -PSGEKITFLDTPGHAAFSAM----R--ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADP 121 (537)
T ss_dssp -SCSSCCBCEECSSSCCTTTS----B--BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSC
T ss_pred -CCCCEEEEEECCChHHHHHH----H--HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccch
Confidence 12457899999996432210 0 01123579999999998762 22233333333223467889999975321
Q ss_pred hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 257 g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..........+ ....++....|..++|++.|.| ++.|++.+....
T Consensus 122 ~~v~~~l~~~~---------~~~e~~~~~~~iv~vSAktG~G-I~eLle~I~~l~ 166 (537)
T 3izy_P 122 EKVKKELLAYD---------VVCEDYGGDVQAVHVSALTGEN-MMALAEATIALA 166 (537)
T ss_dssp CSSSSHHHHTT---------SCCCCSSSSEEECCCCSSSSCS-SHHHHHHHHHHH
T ss_pred HHHHHHHHhhh---------hhHHhcCCCceEEEEECCCCCC-chhHHHHHHHhh
Confidence 11111111111 1111222223567799999999 999999998764
No 194
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.85 E-value=3.3e-09 Score=93.14 Aligned_cols=166 Identities=16% Similarity=0.071 Sum_probs=80.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++++. +.+. .+.+.+.. +..+.. ... ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~------~~~~----~~~~~~t~-----------~~~~~~-~~~-------------~~ 52 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYT------SNTF----PTDYVPTV-----------FDNFSA-NVV-------------VN 52 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH------HSCC----C---------------------CBC-CCC---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC----CCCCCCee-----------eeeEEE-EEE-------------EC
Confidence 4569999999999999999998 3221 00111100 000000 000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++....... ....+... -.+..+|+||+|...
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNR-----LR-PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp -----CEEECCCC-CTTTT-----TG-GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CEEEEEEEEECCCChhhhh-----hH-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 1245677999999643221 10 011236799999999976532111 12222221 234688999999754
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... ... .....++. ...++.+.....+.+...+|++.|.| ++.+++.+.+.+
T Consensus 127 ~~~~-~~~-~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~i 179 (182)
T 3bwd_D 127 DKQF-FID-HPGAVPIT-TVQGEELKKLIGAPAYIECSSKSQEN-VKGVFDAAIRVV 179 (182)
T ss_dssp CHHH-HHH-C--CCCCC-HHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred Cccc-ccc-cccCCCCC-HHHHHHHHHHcCCCEEEEEECCCCCC-HHHHHHHHHHHH
Confidence 3211 000 00000000 00001110001122445689999999 999999887654
No 195
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.85 E-value=2.9e-09 Score=96.05 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++.|. +.+.. ..+.+. .+..+..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~ 69 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFS------KDQFP----EVYVPT-----------VFENYIADIE--------------VD 69 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSCC----SSCCCS-----------SCCCCEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCcCC----cccCCc-----------ccceEEEEEE--------------EC
Confidence 3579999999999999999998 32221 011110 0000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++....... ....+... -.+..+|+||+|+..
T Consensus 70 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 70 GKQVELALWDTAGQEDYDR-----LR-PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp TEEEEEEEECCCCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred CEEEEEEEEECCCchhHHH-----HH-HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 1236789999999642211 10 012236799999999876422111 12222221 234688999999865
Q ss_pred ChhhHHHHHHhcCC-CeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 255 KGGGALSAVAATKS-PVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~g~~l~~~~~~g~-Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.... ......... .+.. ..++....-..+.+...+|+..|.| ++.+++.+.+.
T Consensus 144 ~~~~-~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~SA~~g~g-i~~l~~~i~~~ 197 (201)
T 2gco_A 144 DEHT-RRELAKMKQEPVRS-EEGRDMANRISAFGYLECSAKTKEG-VREVFEMATRA 197 (201)
T ss_dssp CHHH-HHHHHTTTCCCCCH-HHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHH
T ss_pred Cccc-hhhhcccccCcCCH-HHHHHHHHhCCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 4211 111111100 0000 0001110001122445689999999 99999988764
No 196
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.85 E-value=1.5e-09 Score=99.29 Aligned_cols=153 Identities=12% Similarity=-0.002 Sum_probs=83.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+||||||+++++.. |........ ..+..+..... ..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~-----~~~~~~~~~----------------t~~~~~~~~~~-------------~~ 59 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLT-----GEFEKKYVA----------------TLGVEVHPLVF-------------HT 59 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHH-----HHHTCEEET----------------TTTEEEEEEEE-------------EE
T ss_pred cceEEEEECCCCCCHHHHHHHHHc-----CCCCCCCCC----------------ccceeEEEEEE-------------EE
Confidence 346799999999999999999542 111111111 00111110000 00
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc--CCceEEEEeCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...++.+.|+||||...... +. ......+|.+++|+|++..... ......+... -.+..+|+||+|...
T Consensus 60 ~~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 60 NRGPIKFNVWDTAGQEKFGG-----LR-DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133 (221)
T ss_dssp TTEEEEEEEEEECSGGGTSC-----CC-HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS
T ss_pred CCEEEEEEEEeCCChHHHhH-----HH-HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc
Confidence 01246789999999532211 00 0112267999999999865321 1122222221 234688999999854
Q ss_pred Chh--hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGG--GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g--~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
+.- ......... ..+...+|+..|.| ++.+++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~------------------~~~~~~~Sa~~~~g-i~~l~~~l~~~l 173 (221)
T 3gj0_A 134 RKVKAKSIVFHRKK------------------NLQYYDISAKSNYN-FEKPFLWLARKL 173 (221)
T ss_dssp CSSCGGGCCHHHHH------------------TCEEEECBGGGTBT-TTHHHHHHHHHH
T ss_pred ccccHHHHHHHHHc------------------CCEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 310 000111111 12345689999999 999999887765
No 197
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.85 E-value=6.5e-09 Score=91.17 Aligned_cols=146 Identities=13% Similarity=0.057 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+..- +.|. .+..+..... ..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~------~~~~~~-----~~~t-----------~~~~~~~~~~--------------~~ 50 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFL------TGSYQV-----LEKT-----------ESEQYKKEML--------------VD 50 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHH------HSCCCC-----CSSC-----------SSSEEEEEEE--------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCC-----cCCC-----------cceeEEEEEE--------------EC
Confidence 4679999999999999999998 332210 1110 0000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH------HHHHHhc---cCCceEEEEeCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD------QAQAFKQ---SVSVGAVIVTKMD 251 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~------~a~~f~~---~~~~~~vIlnK~D 251 (411)
...+.+.|+||||.... . . ...+|.+++|+|++....... ....... .-.+..+|.||+|
T Consensus 51 ~~~~~l~i~Dt~G~~~~--~---~------~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA--K---F------SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119 (178)
T ss_dssp TEEEEEEEEECSSSCCH--H---H------HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTT
T ss_pred CEEEEEEEEECCCCchh--H---H------HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 12356789999997641 1 1 124699999999986532211 1222222 1235688899999
Q ss_pred CCC---Ch---hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 252 GHA---KG---GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 252 ~~~---~~---g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... +. ..+....... ...+...+|+..|.| ++++++.+.+.+
T Consensus 120 l~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~-i~~lf~~l~~~~ 167 (178)
T 2iwr_A 120 ISASSPRVVGDARARALXADM-----------------KRCSYYETXATYGLN-VDRVFQEVAQKV 167 (178)
T ss_dssp CBTTBCCCSCHHHHHHHHHHH-----------------SSEEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHhh-----------------cCCeEEEEeccccCC-HHHHHHHHHHHH
Confidence 831 11 1111111110 012345689999999 999999887664
No 198
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.85 E-value=2.1e-08 Score=89.26 Aligned_cols=147 Identities=15% Similarity=0.046 Sum_probs=82.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||+++++. +.+.. +.+.+. ...+..... .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~------~~~~~----~~~~~t------------~~~~~~~~~--------------~ 62 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYL------TGTYV----QEESPE------------GGRFKKEIV--------------V 62 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH------HSSCC----CCCCTT------------CEEEEEEEE--------------E
T ss_pred CeeEEEEECCCCCCHHHHHHHHh------cCCCC----CCcCCC------------cceEEEEEE--------------E
Confidence 34679999999999999999998 32211 001110 000000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHhcc----CCceEEEEeCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFKQS----VSVGAVIVTKMDG 252 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~~~----~~~~~vIlnK~D~ 252 (411)
....+.+.|+||||..... ....+|.+++|+|.+..... ......+... -.+..+|.||+|.
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred CCEEEEEEEEECCCChhhh-----------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 0123667889999975432 11246999999999865322 2222233221 1245788999997
Q ss_pred CCCh------hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 253 HAKG------GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 253 ~~~~------g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.... ..+.......+ ..+...+|+..|.| ++.+++.+.+.+
T Consensus 132 ~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~e~Sa~~~~g-v~~lf~~l~~~i 178 (184)
T 3ihw_A 132 SAANPRVIDDSRARKLSTDLK-----------------RCTYYETCATYGLN-VERVFQDVAQKV 178 (184)
T ss_dssp BTTBCCCSCHHHHHHHHHHTT-----------------TCEEEEEBTTTTBT-HHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcC-----------------CCeEEEecCCCCCC-HHHHHHHHHHHH
Confidence 3210 11111111111 12345689999999 999999887654
No 199
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.84 E-value=2.4e-10 Score=102.93 Aligned_cols=154 Identities=14% Similarity=0.007 Sum_probs=79.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
....|+++|.+||||||++++|. +.+...... ... +..+...... .
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~------~~~~~~~~~-----------~~~----~~~~~~~~~~-------------~ 77 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA------DDTYTESYI-----------STI----GVDFKIRTIE-------------L 77 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB------CCCCCCHHH-----------HHH----CCSEEEEEEE-------------E
T ss_pred cceEEEEECCCCCCHHHHHHHHh------cCCCCCCcC-----------Ccc----cceEEEEEEE-------------E
Confidence 34679999999999999999997 433211000 011 1111100000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhcc---CCceEEEEeCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQS---VSVGAVIVTKMDGH 253 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~~---~~~~~vIlnK~D~~ 253 (411)
....+.+.|+||||........ ......+|.+++|+|++...... .....+... -.+..+|+||+|..
T Consensus 78 ~~~~~~~~i~Dt~G~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 78 DGKTIKLQIWDTAGQERFRTIT------SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp TTEEEEEEEECCTTCTTCCCCS------CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred CCEEEEEEEEECCCcHhHHHHH------HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 0113678999999964221100 01123679999999998653221 122222221 23457889999985
Q ss_pred CChh----hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 254 AKGG----GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 254 ~~~g----~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... .+....... ..+...+|+..|.| ++++++.+.+.+.
T Consensus 152 ~~~~v~~~~~~~~~~~~------------------~~~~~~vSA~~g~g-v~~l~~~l~~~l~ 195 (199)
T 3l0i_B 152 TKKVVDYTTAKEFADSL------------------GIPFLETSAKNATN-VEQSFMTMAAEIK 195 (199)
T ss_dssp --CCCCSCC-CHHHHTT------------------TCCBCCCCC---HH-HHHHHHHHTTTTT
T ss_pred ccccCCHHHHHHHHHHc------------------CCeEEEEECCCCCC-HHHHHHHHHHHHH
Confidence 3210 011111111 12445689999999 9999999987764
No 200
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.84 E-value=8.3e-09 Score=97.63 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++.|. |.+...++. +.+. +...... ...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~------~~~~~~~~~--~~~~---------t~~~~~~------------------~~~ 80 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLI------GEQVVRVSP--FQAE---------GLRPVMV------------------SRT 80 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------TSCCSCCCS--SCC----------CCCCEEE------------------EEE
T ss_pred CcEEEEECCCCCCHHHHHHHHh------CCCCcccCC--CCCc---------ceeeEEE------------------EEE
Confidence 4679999999999999999999 766544332 1110 1000000 001
Q ss_pred cCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHhcCCCeeEEEeeCcch-hh--HHHHHHHHhcc-----CCceEEEEeC
Q 015221 181 KENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIG-QA--AFDQAQAFKQS-----VSVGAVIVTK 249 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvda~~g-~~--~~~~a~~f~~~-----~~~~~vIlnK 249 (411)
..+..+.|+||||.... .......+........+|.+++|.+.... .. .......+.+. ..+..+|+||
T Consensus 81 ~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 81 MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence 23568899999997432 23333334333333367889999665431 11 11222222221 1256889999
Q ss_pred CCCC
Q 015221 250 MDGH 253 (411)
Q Consensus 250 ~D~~ 253 (411)
+|..
T Consensus 161 ~Dl~ 164 (262)
T 3def_A 161 AQFS 164 (262)
T ss_dssp TTCC
T ss_pred cccC
Confidence 9985
No 201
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.84 E-value=3.2e-08 Score=106.34 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+.+.|+++|.+|+||||++++|........ +..-|+.. .+...+...+ ...++.+.... ..+
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~-~~g~v~~~-~~~~d~~~~E---~~~giTi~~~~-------------~~~ 72 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVHEG-AATMDFMEQE---RERGITITAAV-------------TTC 72 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CCE-------------EEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCc-ccceecCC-ceeccCchhh---hhcccccccce-------------EEE
Confidence 357799999999999999999985421100 00011110 0000000000 00111110000 011
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
...++.+.|+||||........ .... ..+|.+++|+|++.+... ..........-.+..+|+||+|....
T Consensus 73 ~~~~~~i~liDTPG~~df~~~~----~~~l--~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 73 FWKDHRINIIDTPGHVDFTIEV----ERSM--RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EETTEEEEEECCCSSTTCHHHH----HHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred EECCeEEEEEECcCccchHHHH----HHHH--HHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 1246889999999986533322 1111 246999999999876322 12222222222346788999998543
No 202
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.84 E-value=1.2e-08 Score=106.84 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---Hc-----CC--CceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KK-----GW--KPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVR 170 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~---~~-----g~--kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~ 170 (411)
.+.|+|+|..++|||||+-+|..+-. +. |. +-.+.|. ...-+..|+.+....
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~-----------~~~EreRGITI~s~~------- 92 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDW-----------MAMERERGISVTTSV------- 92 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-------------------------------CTTTE-------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCC-----------hHHHHHCCCcEeece-------
Confidence 46799999999999999999975421 11 10 0011121 111112233322111
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH--HHHHHhccCCceEEEEe
Q 015221 171 IAVEGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQAFKQSVSVGAVIVT 248 (411)
Q Consensus 171 i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~--~a~~f~~~~~~~~vIln 248 (411)
..+.++++.+-||||||......+....| . ..|.+++|+||..|-.... ..+...+.--+..+++|
T Consensus 93 ------~~~~~~~~~iNlIDTPGHvDF~~Ev~raL----~--~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fIN 160 (548)
T 3vqt_A 93 ------MQFPYRDRVVNLLDTPGHQDFSEDTYRVL----T--AVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVN 160 (548)
T ss_dssp ------EEEEETTEEEEEECCCCGGGCSHHHHHHH----H--SCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ------EEEEECCEEEEEEeCCCcHHHHHHHHHHH----H--hcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEe
Confidence 12235689999999999876555433222 2 4599999999998843322 22222222224578999
Q ss_pred CCCCCC
Q 015221 249 KMDGHA 254 (411)
Q Consensus 249 K~D~~~ 254 (411)
|+|...
T Consensus 161 K~Dr~~ 166 (548)
T 3vqt_A 161 KMDREA 166 (548)
T ss_dssp CTTSCC
T ss_pred cccchh
Confidence 999743
No 203
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.84 E-value=1e-08 Score=102.27 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=84.9
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHH
Q 015221 94 FTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAV 173 (411)
Q Consensus 94 ~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~ 173 (411)
+.+.....+.|+++|.+|+||||++++|. ++| ++.| +.++.
T Consensus 14 ~~~~~~~m~~i~iiG~~d~GKSTL~~~L~----~~g-----iTi~------------------~~~~~------------ 54 (370)
T 2elf_A 14 LVPRGSHMANVAIIGTEKSGRTSLAANLG----KKG-----TSSD------------------ITMYN------------ 54 (370)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHTTS----EEE-----EESS------------------SEEEE------------
T ss_pred cccccccCCEEEEECCCCCCHHHHHHHHH----hCC-----EEEE------------------eeEEE------------
Confidence 34433333479999999999999999997 111 1111 11111
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHh-ccCCceEEEEe-C
Q 015221 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFK-QSVSVGAVIVT-K 249 (411)
Q Consensus 174 ~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~-~~~~~~~vIln-K 249 (411)
+...++.+.|+||||...... .+ +.....+|.+++|+| ..+.. ..+...... ..++...+++| |
T Consensus 55 -----~~~~~~~i~iiDtPGh~~f~~----~~--~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK 122 (370)
T 2elf_A 55 -----NDKEGRNMVFVDAHSYPKTLK----SL--ITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRS 122 (370)
T ss_dssp -----ECSSSSEEEEEECTTTTTCHH----HH--HHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCG
T ss_pred -----EecCCeEEEEEECCChHHHHH----HH--HHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 012357799999999864322 22 122347899999999 65522 222222222 12343377899 9
Q ss_pred CCCCCChhh--HHHHHHhcCCCeEEecccccccccc-cCCcchh--hhhhc---CCCCHHHHHHHHHhhC
Q 015221 250 MDGHAKGGG--ALSAVAATKSPVIFIGTGEHMDEFE-VFDVKPF--VSRLL---GMGDWSGFMDKIHEVV 311 (411)
Q Consensus 250 ~D~~~~~g~--~l~~~~~~g~Pi~fi~~Ge~i~~l~-~f~p~~~--vs~~~---g~Gdi~~L~e~i~~~~ 311 (411)
+|. ..... ....... .+.... ...|..+ +|++. |.| ++.|++.+.+.+
T Consensus 123 ~Dl-~~~~~~~~~~~i~~------------~l~~~~~~~~~ii~~~~SA~~~~~g~g-i~~L~~~l~~~~ 178 (370)
T 2elf_A 123 DST-HMHAIDELKAKLKV------------ITSGTVLQDWECISLNTNKSAKNPFEG-VDELKARINEVA 178 (370)
T ss_dssp GGS-CHHHHHHHHHHHHH------------HTTTSTTTTCEEEECCCCTTSSSTTTT-HHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHH------------HHHhcCCCceEEEecccccccCcCCCC-HHHHHHHHHhhc
Confidence 998 32110 0111110 000000 1245667 89999 999 999999888775
No 204
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.83 E-value=2.9e-08 Score=106.91 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
.+++.||||||...... +.... ...+|.+++|+|++.+... ..........-.+..+|+||+|...
T Consensus 81 ~~~i~liDTPG~~df~~----~~~~~--l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTI----EVERS--MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred ceeEEEEeCCCccchHH----HHHHH--HHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 48999999999864322 22221 2256999999999876322 1222222222224578899999854
No 205
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.83 E-value=2.2e-08 Score=101.00 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhc-cCCceEEEEeCCCCCCChhh-
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGGG- 258 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g~- 258 (411)
+.+.|+||||.. .+...+ +.....+|.+++|+|++.+. ...+....+.. ..++..+++||+|.......
T Consensus 83 ~~i~iiDtPGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 83 RRVSFIDAPGHE----ALMTTM--LAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EEEEEEECSSHH----HHHHHH--HHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred cEEEEEECCChH----HHHHHH--HhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHH
Confidence 578999999953 333332 23344679999999998541 22222222221 23345788999998653211
Q ss_pred -HHHHHHhcCCCeEEecccccccc-cccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 259 -ALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 259 -~l~~~~~~g~Pi~fi~~Ge~i~~-l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
....... .+.. .....|..++|++.|.| ++.|++.+.+.++.
T Consensus 157 ~~~~~i~~------------~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKE------------FIEGTVAENAPIIPISALHGAN-IDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHH------------HHTTSTTTTCCEEECBTTTTBS-HHHHHHHHHHHSCC
T ss_pred HHHHHHHH------------HHHhcCcCCCeEEEeeCCCCCC-HHHHHHHHHHhCCC
Confidence 1111110 0000 01134667799999999 99999999987753
No 206
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.83 E-value=5e-08 Score=98.32 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=59.8
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---hHHHHHHHHhc-cCCceEEEEeCCCCCCChh--
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKGG-- 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~g-- 257 (411)
+.+.|+||||.. .+...+ +..+..+|.+++|+|++.+. ...+....+.. ..++..+++||+|......
T Consensus 81 ~~i~iiDtPGh~----~f~~~~--~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 81 RRVSFVDSPGHE----TLMATM--LSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EEEEEEECSSHH----HHHHHH--HTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTT
T ss_pred cEEEEEECCCHH----HHHHHH--HHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHH
Confidence 578999999952 232222 23344789999999998541 22222222221 2334678999999854321
Q ss_pred hHHHHHHhcCCCeEEeccccccccc-ccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 258 GALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 258 ~~l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
........ .+... ....|..++|++.|.| ++.|++.+.+.++.
T Consensus 155 ~~~~~i~~------------~l~~~~~~~~~~i~vSA~~g~g-i~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 155 ENYEQIKE------------FVKGTIAENAPIIPISAHHEAN-IDVLLKAIQDFIPT 198 (408)
T ss_dssp THHHHHHH------------HHTTSTTTTCCEEEC------C-HHHHHHHHHHHSCC
T ss_pred HHHHHHHH------------HHhhcCCCCCeEEEeeCCCCCC-HHHHHHHHHHhCCC
Confidence 11111110 00000 1124567789999999 99999999987753
No 207
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.83 E-value=5.9e-09 Score=93.52 Aligned_cols=169 Identities=14% Similarity=0.070 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+ .... +.+ + .+..+..... .
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~------~~~--~~~~--~~~---------t--~~~~~~~~~~--------------~ 63 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYT------TNG--YPTE--YIP---------T--AFDNFSAVVS--------------V 63 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHH------C------------C---------C--SSEEEEEEEE--------------E
T ss_pred cceEEEEECCCCCCHHHHHHHHH------hCC--CCCC--CCC---------c--ccceeEEEEE--------------E
Confidence 35679999999999999999998 433 1110 000 0 0111100000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 253 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~ 253 (411)
....+.+.|+||||...... +.. .....+|.+++|+|++......+ ....+... -.+..+|.||+|..
T Consensus 64 ~~~~~~~~i~Dt~G~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 64 DGRPVRLQLCDTAGQDEFDK-----LRP-LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp TTEEEEEEEEECCCSTTCSS-----SGG-GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred CCEEEEEEEEECCCCHHHHH-----HhH-hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 01135677999999753221 100 12236799999999986532211 11222221 23468899999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
................+. ...++.+.....+.+...+|+..|.| ++.+++.+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~ 193 (201)
T 2q3h_A 138 EDVKVLIELDKCKEKPVP-EEAAKLLAEEIKAASYIECSALTQKN-LKEVFDAAIVAG 193 (201)
T ss_dssp GCHHHHHHHHTTTCCCCC-HHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred hchhhhhhhcccccccCC-HHHHHHHHHhcCCcEEEEEecCCCCC-HHHHHHHHHHHH
Confidence 432111000000000000 00001110001122456689999999 999999887665
No 208
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.82 E-value=1.9e-08 Score=102.34 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=41.3
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
.++.+.|+||||...... .+ ......+|.+++|+|++.+.. ..+....... ..++..+|+||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f~~----~~--~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTR----NM--ATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHH----HH--HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHH----HH--HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 356799999999754322 22 123357899999999987621 1222222111 2334678899999864
No 209
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.82 E-value=1.7e-08 Score=106.46 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHH-HHHhccCCceEEEEeCCCCCCCh-hh
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQA-QAFKQSVSVGAVIVTKMDGHAKG-GG 258 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a-~~f~~~~~~~~vIlnK~D~~~~~-g~ 258 (411)
++.+.|+||||...... ++.... ..+|.+++|+|++.+.. ..... ......+ +..+|+||+|..... ..
T Consensus 70 ~~~l~liDTPGh~dF~~----ev~~~l--~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~i-piIvViNKiDl~~a~~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSY----EVSRSL--AACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVVPVLNKIDLPAADPER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHH----HHHHHH--HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTC-EEEEEEECTTSTTCCHHH
T ss_pred eEEEEEEECCCchHHHH----HHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEeeeccCcccccHHH
Confidence 47789999999864433 222222 24699999999987622 22222 2222223 468899999985432 11
Q ss_pred HHH-HHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCCC
Q 015221 259 ALS-AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 259 ~l~-~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
... +....+.+ ..+..++|++.|.| ++.|++.+.+.++.
T Consensus 143 v~~ei~~~lg~~---------------~~~vi~vSAktg~G-I~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 143 VAEEIEDIVGID---------------ATDAVRCSAKTGVG-VQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHTCCC---------------CTTCEEECTTTCTT-HHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC---------------cceEEEeecccCCC-chhHHHHHhhcCCC
Confidence 122 22222211 12356789999999 99999999998864
No 210
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.82 E-value=7.2e-09 Score=93.30 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|+ |.+... ... +. .+..++..... ..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~~-~~~---~~-----------~~~~~~~~~~~-------------~~ 68 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG------GLQGDS-AHE---PE-----------NPEDTYERRIM-------------VD 68 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC------CEECCG-GGT---TT-----------SCTTEEEEEEE-------------ET
T ss_pred EEEEEEECCCCCCHHHHHHHHH------hccCCc-cCC---CC-----------cccceEEEEEE-------------EC
Confidence 4679999999999999999997 432111 000 00 01111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh---HHHHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA---AFDQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
...+.+.++||||.......+... ....+|.+++|.|.+.... .......+.. ...+..+|.||+|+.
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDH-----CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHH-----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred CEEEEEEEEecCCCccchhhhHHH-----hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 123567889999986433211111 1125699999999975422 1122222221 123467899999985
Q ss_pred CChhh----HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGG----ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~----~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
..... ........+ .+...+|+..|.| ++.+++.+.+.+
T Consensus 144 ~~~~v~~~~~~~~a~~~~------------------~~~~e~Sa~~~~~-v~~lf~~l~~~i 186 (195)
T 3cbq_A 144 RSREVSLEEGRHLAGTLS------------------CKHIETSAALHHN-TRELFEGAVRQI 186 (195)
T ss_dssp TTCCSCHHHHHHHHHHTT------------------CEEEEEBTTTTBS-HHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHhC------------------CEEEEEcCCCCCC-HHHHHHHHHHHH
Confidence 43111 111111111 2335689999999 999999987765
No 211
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.82 E-value=4.7e-09 Score=93.72 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. . . .+.+. .+..+..... ..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~------~~~~--~-~-~~~~t-----------~~~~~~~~~~--------------~~ 67 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFS------KGEI--P-T-AYVPT-----------VFENFSHVMK--------------YK 67 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HSCC--C-S-SCCCC-----------SEEEEEEEEE--------------ET
T ss_pred eeEEEEECcCCCCHHHHHHHHh------cCCC--C-C-ccCCe-----------eeeeeEEEEE--------------EC
Confidence 4679999999999999999998 3331 0 0 11110 0000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++......+ ....+... -.+..+|.||+|...
T Consensus 68 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYDR-----LR-PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp TEEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred CEEEEEEEEECCCcHHHHH-----Hh-HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1246679999999642211 10 011236799999999986532222 11222221 235688999999753
Q ss_pred Ch------hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KG------GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~------g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ..........+ +.+...+|+..|.| ++++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~Sa~~~~g-i~~l~~~l~~~i 186 (194)
T 3reg_A 142 DGSDDVTKQEGDDLCQKLG-----------------CVAYIEASSVAKIG-LNEVFEKSVDCI 186 (194)
T ss_dssp TTTTCCCHHHHHHHHHHHT-----------------CSCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHhcC-----------------CCEEEEeecCCCCC-HHHHHHHHHHHH
Confidence 21 11112222112 12245589999999 999999988765
No 212
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.81 E-value=1.2e-09 Score=96.21 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. +.. +.+ ..+..+..... ..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~------~~~~--~~~--~~~-----------t~~~~~~~~~~--------------~~ 50 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV------EGQF--VDS--YDP-----------TIENTFTKLIT--------------VN 50 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSSC--CSC--CCT-----------TCCEEEEEEEE--------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHH------cCCC--CCC--CCC-----------CccccEEEEEE--------------EC
Confidence 4679999999999999999998 3221 110 100 00111100000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH---HHHHHh----ccCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD---QAQAFK----QSVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~---~a~~f~----~~~~~~~vIlnK~D~~ 253 (411)
...+.+.|+||||...... + .......+|.+++|+|.+....... ....+. ..-.+..+|.||+|..
T Consensus 51 ~~~~~~~l~Dt~G~~~~~~-----~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 51 GQEYHLQLVDTAGQDEYSI-----F-PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp TEEEEEEEEECCCCCTTCC-----C-CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred CEEEEEEEEeCCCchhhhH-----H-HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 1236778999999653210 0 0011236799999999976432111 111221 1123468899999974
Q ss_pred CCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... ..+.......+. +...+|+..|.| ++++++.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~------------------~~~~~Sa~~~~~-v~~l~~~l~~~~ 167 (181)
T 3t5g_A 125 MERVISYEEGKALAESWNA------------------AFLESSAKENQT-AVDVFRRIILEA 167 (181)
T ss_dssp TTCCSCHHHHHHHHHHTTC------------------EEEECCTTSHHH-HHHHHHHHHHHH
T ss_pred hcceecHHHHHHHHHHhCC------------------cEEEEecCCCCC-HHHHHHHHHHHH
Confidence 321 111222222221 335578889999 999999887765
No 213
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.80 E-value=9.2e-10 Score=116.30 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=31.3
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch---------hhHHHHHHHHh-ccCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG---------QAAFDQAQAFK-QSVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~a~~f~-~~~~~~~vIlnK~ 250 (411)
..++.+.|+||||.......+ +.....+|.+++|+|++.| ......+.... ..++...+|+||+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGM------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp -------CCEEESSSEEEEEC------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred eCCeEEEEEECCChHHHHHHH------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 346889999999975321110 1112357999999999853 12222222222 2233357789999
Q ss_pred CCCC
Q 015221 251 DGHA 254 (411)
Q Consensus 251 D~~~ 254 (411)
|...
T Consensus 326 Dl~~ 329 (592)
T 3mca_A 326 DLMS 329 (592)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9854
No 214
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.29 E-value=5.6e-10 Score=100.77 Aligned_cols=168 Identities=15% Similarity=0.086 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+. .. .+.+... .. +... -..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~------~~~~--~~--~~~~t~~-----------~~-~~~~-------------~~~ 73 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYT------TNAF--PG--EYIPTVF-----------DN-YSAN-------------VMV 73 (204)
Confidence 34569999999999999999997 2221 00 0000000 00 0000 001
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGH 253 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~ 253 (411)
....+.+.|+||||..... .+.. .....+|.+++|+|++......+ ....+... -.+..+|+||+|..
T Consensus 74 ~~~~~~l~i~Dt~G~~~~~-----~~~~-~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 74 DGKPVNLGLWDTAGQEDYD-----RLRP-LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 1124667799999964221 1110 11235789999999875432111 11122211 12457889999985
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
..... ................++.+..-..+.+...+|+..|.| ++.+++.+.+.
T Consensus 148 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~g-i~~l~~~l~~~ 202 (204)
T 3th5_A 148 DDKDT-IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRA 202 (204)
Confidence 43211 111000000000000111111111122456699999999 99999887654
No 215
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=4.3e-09 Score=93.86 Aligned_cols=166 Identities=16% Similarity=0.093 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. . ..+.+. .+..+..... ..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~------~~~~--~--~~~~~t-----------~~~~~~~~~~--------------~~ 62 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYA------NDAF--P--EEYVPT-----------VFDHYAVSVT--------------VG 62 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSSC--C--CSCCCS-----------SCCCEEEEEE--------------SS
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC--C--CCCCCc-----------ccceeEEEEE--------------EC
Confidence 3579999999999999999998 3221 0 011110 0011000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--H--HHHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--F--DQAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~--~~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++..... . .....+... -.+..+|.||+|...
T Consensus 63 ~~~~~~~i~D~~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYDR-----LR-PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp SCEEEEEEECCCCSSSSTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred CEEEEEEEEECCCCcchhH-----HH-HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1236788999999753321 10 0112367999999999765321 1 112222221 234688999999865
Q ss_pred ChhhHHHHHHhcC-CCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 255 KGGGALSAVAATK-SPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~g~~l~~~~~~g-~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
... ......... ..+. ...++.+..-..+.+...+|+..|.| ++++++.+.+.
T Consensus 137 ~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~ 190 (194)
T 2atx_A 137 DPK-TLARLNDMKEKPIC-VEQGQKLAKEIGACCYVECSALTQKG-LKTVFDEAIIA 190 (194)
T ss_dssp CHH-HHHHHTTTTCCCCC-HHHHHHHHHHHTCSCEEECCTTTCTT-HHHHHHHHHHH
T ss_pred ccc-chhhcccccCcccC-HHHHHHHHHHcCCcEEEEeeCCCCCC-HHHHHHHHHHH
Confidence 421 111110000 0000 00001110000122455689999999 99999988764
No 216
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.76 E-value=6.6e-08 Score=97.13 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch-HHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG-AFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~-a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..|+++|.+|+||||++++|.......|... +... ..+.+. .....++.+..... .+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~-------~~~~~~~d~~~-~e~~~giTi~~~~~-------------~~~ 62 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAK-------FKKYEEIDNAP-EERARGITINAAHV-------------EYS 62 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBC-------CCCHHHHHSCC-EEEETTEEEECEEE-------------EEE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccc-------cchhhhhhcCH-HHHhcCcEEEeeeE-------------Eec
Confidence 5699999999999999999997766655321 0000 000000 00011221110000 011
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHHHHHHHhc-cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFDQAQAFKQ-SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~~a~~f~~-~~~~~~vIlnK~D~~~ 254 (411)
..++.+.|+||||.. ++...+ ......+|.+++|+|++.+.. ..+....... .++...+++||+|...
T Consensus 63 ~~~~~~~iiDtpG~~----~f~~~~--~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 63 TAARHYAHTDCPGHA----DYVKNM--ITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CSSCEEEEEECSSHH----HHHHHH--HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred cCCeEEEEEECCChH----HHHHHH--HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 236889999999963 222222 233447899999999987521 2222222222 2332467899999864
No 217
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.75 E-value=4.9e-08 Score=103.04 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCCh----h
Q 015221 184 CDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKG----G 257 (411)
Q Consensus 184 ~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~----g 257 (411)
+.+.|+||||....... . ......+|.+++|+|++.|. ............-.+..+++||+|..... +
T Consensus 70 ~~i~liDTPGhe~F~~~----~--~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTL----R--KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CEEEEECCCTTSCCTTS----B--CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTT
T ss_pred CCEEEEECCCcHHHHHH----H--HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccC
Confidence 46899999997533210 0 01123579999999998752 22222333333223468899999985311 0
Q ss_pred ------------hH-----------HHHHHhcCCCeEEeccccccccc---ccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 258 ------------GA-----------LSAVAATKSPVIFIGTGEHMDEF---EVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 258 ------------~~-----------l~~~~~~g~Pi~fi~~Ge~i~~l---~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
.. ...+...+.. ++....+ ....|..++|++.|.| ++.|++.+...+
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~------~e~~~~l~~~~~~vpvv~vSA~tG~G-I~eLl~~I~~~~ 216 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFE------SERFDRVTDFASQVSIIPISAITGEG-IPELLTMLMGLA 216 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCE------EEEGGGCSCTTTEEEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcc------hHHHHHHHhccCcceEEEEeccCCCC-chhHHHHHHhhc
Confidence 00 0011111211 0111111 2234667899999999 999999987643
No 218
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.73 E-value=3.1e-08 Score=105.54 Aligned_cols=184 Identities=16% Similarity=0.122 Sum_probs=101.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc-CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA-DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~-D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
-|+|+|..++|||||+-+|..+-..-. +..-|+. +++- . + ...-...|+.+..... .+.+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~-~~g~v~~g~~~~-D-~---~~~EreRGITI~s~~~-------------~~~~ 64 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAIT-ELGSVDKGTTRT-D-N---TLLERQRGITIQTGIT-------------SFQW 64 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCS-SCSSCCCSCCST-T-C---STTHHHHSSCSSCCCC-------------CCBC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCc-cccccccCCccc-C-C---cHHHHhCCCcEEeeeE-------------EEEE
Confidence 489999999999999999986553211 1110110 0000 0 0 0011122343322111 1235
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHH-hccCCceEEEEeCCCCCCC-hh
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAF-KQSVSVGAVIVTKMDGHAK-GG 257 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f-~~~~~~~~vIlnK~D~~~~-~g 257 (411)
+++.+.||||||......+.... . ...|.+++|+||..|-.. ....+.. ...++ ..+++||+|.... ..
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~ra----L--~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~ 137 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRS----L--SVLDGAILLISAKDGVQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLS 137 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHH----H--TTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH
T ss_pred CCEEEEEEECCCcHHHHHHHHHH----H--HHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-eEEEEeccccccCCHH
Confidence 68899999999987655433222 2 246999999999987321 1222222 22344 4788999997432 22
Q ss_pred hHH-HHHHhcCCCeEEecc----------------------------------cccccc------------cccCCcchh
Q 015221 258 GAL-SAVAATKSPVIFIGT----------------------------------GEHMDE------------FEVFDVKPF 290 (411)
Q Consensus 258 ~~l-~~~~~~g~Pi~fi~~----------------------------------Ge~i~~------------l~~f~p~~~ 290 (411)
..+ .+....+.++.+... |+.++. -..+.|..+
T Consensus 138 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~ 217 (638)
T 3j25_A 138 TVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYH 217 (638)
T ss_dssp HHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccc
Confidence 222 333444443322110 000000 012467778
Q ss_pred hhhhcCCCCHHHHHHHHHhhCCC
Q 015221 291 VSRLLGMGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 291 vs~~~g~Gdi~~L~e~i~~~~~~ 313 (411)
.|++.|.| ++.|++.+.+.++.
T Consensus 218 gSa~~~~G-v~~LLd~i~~~~p~ 239 (638)
T 3j25_A 218 GSAKSNIG-IDNLIEVITNKFYS 239 (638)
T ss_dssp CCSTTCCS-HHHHHHHHHHSCCC
T ss_pred cccccCCC-chhHhhhhhccccC
Confidence 89999999 99999999998753
No 219
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.73 E-value=6.9e-08 Score=98.86 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=54.5
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHh-ccCCceEEEEeCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~-~~~~~~~vIlnK~D 251 (411)
.++.+.|+||||.... ...+ ......+|.+++|+|++.+. ...+...... ..++...+++||+|
T Consensus 83 ~~~~~~iiDtPGh~~f----~~~~--~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDF----IKNM--ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp SSEEEEEEECCCCTTH----HHHH--HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred CCceEEEEECCCcHHH----HHHH--HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 3678999999996532 2222 23345789999999998762 1222222222 12333577899999
Q ss_pred CCCChhh--------HHHHHHhcC-----CCeEEec--cccccccc
Q 015221 252 GHAKGGG--------ALSAVAATK-----SPVIFIG--TGEHMDEF 282 (411)
Q Consensus 252 ~~~~~g~--------~l~~~~~~g-----~Pi~fi~--~Ge~i~~l 282 (411)
....... ....+...+ .|+..++ +|+++.++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 8631111 112223344 5677776 77777654
No 220
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.72 E-value=1e-08 Score=92.81 Aligned_cols=165 Identities=15% Similarity=0.067 Sum_probs=85.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+. .+.+.+. .+..+..... ..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~------~~~~----~~~~~~t-----------~~~~~~~~~~--------------~~ 53 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYT------SNKF----PTDYIPT-----------VFDNFSANVA--------------VD 53 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCC----CSSCCCS-----------SCCCEEEEEE--------------CS
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCCC----CccCCCc-----------cceeEEEEEE--------------EC
Confidence 4679999999999999999998 3221 0111110 0011000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++....... ....+... -.+..+|.||+|+..
T Consensus 54 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 54 GQIVNLGLWDTAGQEDYSR-----LR-PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp SCEEEEEEECCCCCCCCCC--------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred CEEEEEEEEECCCcHHHHH-----HH-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 1236789999999753221 10 012336799999999976532211 12222221 234688999999744
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
.... ......++ ....++.+..-....+...+|+..|.| ++.+++.+.+.+.
T Consensus 128 ~~~~----~~~~~~~v-~~~~~~~~~~~~~~~~~~~~Sa~~g~g-i~~l~~~l~~~~~ 179 (212)
T 2j0v_A 128 DKGY----LADHTNVI-TSTQGEELRKQIGAAAYIECSSKTQQN-VKAVFDTAIKVVL 179 (212)
T ss_dssp CHHH----HHTCSSCC-CHHHHHHHHHHHTCSEEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred Cccc----cccccCCC-CHHHHHHHHHHcCCceEEEccCCCCCC-HHHHHHHHHHHHh
Confidence 3210 00000000 000000010000112446689999999 9999999887763
No 221
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.72 E-value=8.7e-09 Score=91.86 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=81.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+||||||++++|. +.+.. +.+.+. .+..+..... .
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~ 64 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFL------TKRFI----SEYDPN-----------LEDTYSSEET--------------V 64 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHH------HSSCC----SCCCTT-----------CCEEEEEEEE--------------E
T ss_pred ceEEEEEECCCCCcHHHHHHHHH------hCCCC----cccCCC-----------ccceeeEEEE--------------E
Confidence 34679999999999999999998 33211 111110 0111100000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc------cCCceEEEEeCC
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ------SVSVGAVIVTKM 250 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~------~~~~~~vIlnK~ 250 (411)
....+.+.|+||||...... +. .....+|.+++|.|.+...... .....+.. .-.+..+|.||+
T Consensus 65 ~~~~~~l~i~Dt~G~~~~~~-----~~--~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 137 (187)
T 3c5c_A 65 DHQPVHLRVMDTADLDTPRN-----CE--RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137 (187)
T ss_dssp TTEEEEEEEEECCC---CCC-----TH--HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred CCEEEEEEEEECCCCCcchh-----HH--HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence 01246788999999643221 11 1223679999999997542211 11122211 123468899999
Q ss_pred CCCCCh----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhh-hcCCCCHHHHHHHHHhhC
Q 015221 251 DGHAKG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSR-LLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 251 D~~~~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~-~~g~Gdi~~L~e~i~~~~ 311 (411)
|..... ..+.......+ .+...+|+ ..|.| ++.+++.+.+.+
T Consensus 138 Dl~~~~~v~~~~~~~~~~~~~------------------~~~~e~Sa~~~g~g-v~~lf~~l~~~i 184 (187)
T 3c5c_A 138 DMAQYRQVTKAEGVALAGRFG------------------CLFFEVSACLDFEH-VQHVFHEAVREA 184 (187)
T ss_dssp GGGGGCSSCHHHHHHHHHHHT------------------CEEEECCSSSCSHH-HHHHHHHHHHHH
T ss_pred chhhcCccCHHHHHHHHHHcC------------------CcEEEEeecCcccc-HHHHHHHHHHHH
Confidence 984321 11122222222 13345788 78999 999998887654
No 222
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.72 E-value=5.6e-08 Score=88.33 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=63.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|++||||||++++|+ +..... ....+.+. .. .+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~------~~~~~~-~~~~~~~~----------------~~----~~~----------- 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT------TDSVRP-TVVSQEPL----------------SA----ADY----------- 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHH------HSSCCC-BCCCSSCE----------------EE----TTG-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHh------cCCCCC-eeeecCce----------------EE----EEe-----------
Confidence 45679999999999999999998 332110 00001110 00 000
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc-ch---hhHHHHHHHHh-------ccCCceEEEEe
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS-IG---QAAFDQAQAFK-------QSVSVGAVIVT 248 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~-~g---~~~~~~a~~f~-------~~~~~~~vIln 248 (411)
..+.+.++||||...........++. ....++.+++|+|++ .. .........+. ..-.+..+|+|
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYLKT--RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHHHH--HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred --eCceEEEEECCCcHHHHHHHHHHHHh--ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 25788999999986544322222211 112358899999998 22 11112221111 11234688999
Q ss_pred CCCCCCC
Q 015221 249 KMDGHAK 255 (411)
Q Consensus 249 K~D~~~~ 255 (411)
|+|....
T Consensus 129 K~Dl~~~ 135 (218)
T 1nrj_B 129 KSELFTA 135 (218)
T ss_dssp CTTSTTC
T ss_pred chHhccc
Confidence 9998554
No 223
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.71 E-value=1.1e-07 Score=94.90 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+++++.|..|+||||++.+||.+++++|++|++|++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 567788999999999999999999999999999999
No 224
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.71 E-value=1e-07 Score=101.98 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHH---cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQK---KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGV 176 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~---~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l 176 (411)
+...|+++|++|+||||+++.|+..... .| ++ .+............ +.++.+.....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V--~~g~~~~d~~~~e~-----~~giti~~~~~------------ 67 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV--EEGTTTTDYTPEAK-----LHRTTVRTGVA------------ 67 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG--GGTCCSSCCSHHHH-----HTTSCCSCEEE------------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee--cCCcccccCCHHHH-----hcCCeEEecce------------
Confidence 3467999999999999999999954321 11 11 11100000000001 11221111000
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH--HHHHHHHhccCCceEEEEeCCCCC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA--FDQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~--~~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
.+...++.+.|+||||....... +.... ..+|.+++|+|++.+.+. ..........-.+..+|+||+|..
T Consensus 68 -~~~~~~~~~nliDTpG~~~f~~~----~~~~l--~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 68 -PLLFRGHRVFLLDAPGYGDFVGE----IRGAL--EAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp -EEEETTEEEEEEECCCSGGGHHH----HHHHH--HHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred -EEeeCCEEEEEEeCCCccchHHH----HHHHH--hhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 01123578899999998643322 22112 246899999999876332 222222222223457889999986
No 225
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.70 E-value=2.6e-08 Score=104.30 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=40.2
Q ss_pred CEEEEeCCCCCcchHH-------HHHHHHHHHHhcCCCeeEEEeeCcch---hhHHHHHHHHhccCCceEEEEeCCCCCC
Q 015221 185 DLIIVDTSGRHKQEAA-------LFEEMRQVSEATNPDLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 185 d~viIDTaG~~~~~~~-------l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~a~~f~~~~~~~~vIlnK~D~~~ 254 (411)
.++||||||....... +....... ...+|.+++|+|++.. .........+.....+..+|+||+|...
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~--l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWF--AERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHH--HHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHH--HHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 5799999998742211 11111111 2356999999999652 2223334444332234688999999865
Q ss_pred C
Q 015221 255 K 255 (411)
Q Consensus 255 ~ 255 (411)
.
T Consensus 233 ~ 233 (550)
T 2qpt_A 233 T 233 (550)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.69 E-value=1.8e-08 Score=104.05 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
++.+|+++|.+|+|||||+++|...-...+....+ +. .+..+. +
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GI-T~------------------~i~~~~-----------------v 46 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGI-TQ------------------HIGAYH-----------------V 46 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCC-CC------------------CSSCCC-----------------C
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCe-eE------------------eEEEEE-----------------E
Confidence 45679999999999999999997432111111000 00 000000 0
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCChh
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG 257 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g 257 (411)
..+++.+.|+||||....... + ......+|.+++|+|++.|. ...+........-.+..+++||+|......
T Consensus 47 ~~~~~~i~~iDTPGhe~f~~~----~--~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~ 120 (501)
T 1zo1_I 47 ETENGMITFLDTPGHAAFTSM----R--ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP 120 (501)
T ss_dssp CTTSSCCCEECCCTTTCCTTS----B--CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC
T ss_pred EECCEEEEEEECCCcHHHHHH----H--HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH
Confidence 113567899999997533210 0 11233679999999998651 122222222222223688999999853210
Q ss_pred -hHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 258 -GALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 258 -~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.....+. ..+...+.+....|..++|++.|.| ++.|++.+...
T Consensus 121 ~~v~~~l~---------~~~~~~~~~~~~~~~v~vSAktG~g-I~eLle~I~~~ 164 (501)
T 1zo1_I 121 DRVKNELS---------QYGILPEEWGGESQFVHVSAKAGTG-IDELLDAILLQ 164 (501)
T ss_dssp CCTTCCCC---------CCCCCTTCCSSSCEEEECCTTTCTT-CTTHHHHTTTT
T ss_pred HHHHHHHH---------HhhhhHHHhCCCccEEEEeeeeccC-cchhhhhhhhh
Confidence 0000000 0000001111224667799999999 99999998654
No 227
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=1.1e-07 Score=87.24 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++++. |.+..+++. + . ..+..++..... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~------~~~~~~~~~--~---------~---~~g~d~~~~~i~-------------~~ 83 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFA------GVHDSMDSD--C---------E---VLGEDTYERTLM-------------VD 83 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH------CCCCTTCCC-----------------CCTTEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHH------hCCCCCCCc--C---------C---ccceeeEEEEEE-------------EC
Confidence 3679999999999999999998 644332221 0 0 011111110000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HH-HHHHHHhc----cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AF-DQAQAFKQ----SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~-~~a~~f~~----~~~~~~vIlnK~D~~ 253 (411)
...+.++++||+|..... ..+.. .....++.+++|.|.+.... .. .....+.. .-.+..+|.||+|+.
T Consensus 84 ~~~~~l~~~Dt~g~~~~~----~~l~~-~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 84 GESATIILLDMWENKGEN----EWLHD-HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp TEEEEEEEECCTTTTHHH----HHHHH-CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred CeeeEEEEeecCCCcchh----hhHHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 113567899999964211 11211 11235688899999874321 11 11122221 123467889999985
Q ss_pred CChhhHH----HHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGGAL----SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~~l----~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
....... ......+ .+...+|++.|.| ++++++.+.+.+
T Consensus 159 ~~r~v~~~e~~~~a~~~~------------------~~~~e~SAk~g~~-v~elf~~l~~~i 201 (211)
T 2g3y_A 159 RCREVSVSEGRACAVVFD------------------CKFIETSAAVQHN-VKELFEGIVRQV 201 (211)
T ss_dssp GGCCSCHHHHHHHHHHHT------------------CEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred cCceEeHHHHHHHHHHcC------------------CEEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 3211100 1111111 1334589999999 999999887654
No 228
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.69 E-value=8.4e-08 Score=97.52 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=42.2
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHhc-cCCceEEEEeCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFKQ-SVSVGAVIVTKM 250 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~~-~~~~~~vIlnK~ 250 (411)
..++.+.|+||||...... .+ ......+|.+++|+|++.+. ...+....... ..+...+++||+
T Consensus 81 ~~~~~~~iiDtpG~~~f~~----~~--~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVK----NM--ITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp CSSCEEEECCCSSSTTHHH----HH--HHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred cCCeEEEEEECCCcHHHHH----HH--HhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 3468899999999764322 22 23345789999999998751 11111211111 233457889999
Q ss_pred CCCC
Q 015221 251 DGHA 254 (411)
Q Consensus 251 D~~~ 254 (411)
|...
T Consensus 155 Dl~~ 158 (435)
T 1jny_A 155 DLTE 158 (435)
T ss_dssp GGSS
T ss_pred cCCC
Confidence 9865
No 229
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=2.3e-08 Score=100.54 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa 122 (411)
.|+++|.|||||||++|+|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~ 21 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAAT 21 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999
No 230
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.68 E-value=5.4e-08 Score=87.22 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=58.3
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHH----HHHHHh--ccCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFD----QAQAFK--QSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~----~a~~f~--~~~~~~~vIlnK~D~~~~ 255 (411)
.+.+.|+||||........... . .....+|.+++|+|++.. .+... ...... ..-.+..+|.||+|+...
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~-~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDY-E--MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCH-H--HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred eeEEEEEECCCCHHHHhhhhhc-c--cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 5789999999974321110000 0 111257999999999864 12212 122221 112356788999997542
Q ss_pred hhhH---HHHHHhcCCCeEEecccccccc-c--ccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 256 GGGA---LSAVAATKSPVIFIGTGEHMDE-F--EVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 256 ~g~~---l~~~~~~g~Pi~fi~~Ge~i~~-l--~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.... ..+... .++.+.. . ....+-..+|++. .| ++++++.+.+.
T Consensus 145 ~~~~~~~~~v~~~---------~~~~~~~~~~~~~~~~~~e~Sa~~-~~-v~~~f~~l~~~ 194 (196)
T 3llu_A 145 DHKIETQRDIHQR---------ANDDLADAGLEKLHLSFYLTSIYD-HS-IFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHTTCTTSCEEEEEECTTS-TH-HHHHHHHHHHH
T ss_pred hhhhHHHhHHHHH---------HHHHHHHhhhhcCCcceEEEEech-hh-HHHHHHHHHHH
Confidence 1100 000000 0011100 0 0112334589999 88 99999988764
No 231
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.68 E-value=1.4e-07 Score=86.92 Aligned_cols=152 Identities=17% Similarity=0.177 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++.. |. - .+.|.| ..++.++...... ..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~-----~~-f----~~~~~~-----------Tig~d~~~k~~~~-------------~~ 59 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY-----DS-F----DNTYQA-----------TIGIDFLSKTMYL-------------ED 59 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-----SC-C----C---------------------CEEEEEEC-------------SS
T ss_pred EEEEEECcCCcCHHHHHHHHHh-----CC-C----CCCcCC-----------ccceEEEEEEEEe-------------cc
Confidence 5799999999999999999872 11 0 001111 0111111100000 01
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---H---HHHHHhccCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---D---QAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~---~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.|.||||...... +.. .....++.+++|.|.+...... . ........-.+..+|.||+|+...
T Consensus 60 ~~v~l~iwDtaGqe~~~~-----l~~-~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRS-----LIP-SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp CEEEEEEECCSCTTTCGG-----GHH-HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred eEEEEEEEECCCchhhhh-----HHH-HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 246778999999753321 111 1123679999999987543211 1 122222222346788999998542
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
. ..+.......+. +-..+|++.|.| ++++++.+.+.+.
T Consensus 134 r~V~~~e~~~~a~~~~~------------------~~~e~SAktg~n-V~e~F~~i~~~i~ 175 (216)
T 4dkx_A 134 RQVSIEEGERKAKELNV------------------MFIETSAKAGYN-VKQLFRRVAAALP 175 (216)
T ss_dssp CCSCHHHHHHHHHHHTC------------------EEEEEBTTTTBS-HHHHHHHHHHHC-
T ss_pred CcccHHHHhhHHHHhCC------------------eeEEEeCCCCcC-HHHHHHHHHHHHH
Confidence 1 122222222221 223489999999 9999999988774
No 232
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.67 E-value=2.2e-08 Score=88.70 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. +.+.|.. +..+..... ..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~------~~~~~----~~~~~t~-----------~~~~~~~~~--------------~~ 51 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFA------KDCFP----ENYVPTV-----------FENYTASFE--------------ID 51 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC----SSCCCCS-----------EEEEEEEEE--------------CS
T ss_pred EEEEEEECCCCCCHHHHHHHHh------cCCCC----CCCCCcc-----------ceeEEEEEE--------------EC
Confidence 4669999999999999999998 32210 1111110 000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhc--cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++........ ...+.. .-.+..+|.||+|...
T Consensus 52 ~~~~~~~i~Dt~G~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 52 TQRIELSLWDTSGSPYYDN-----VR-PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp SCEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCChhhhh-----hH-HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 1246789999999642211 10 0112367999999999865322111 122222 1235688899999864
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhh-cCCCCHHHHHHHHHhh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~-~g~Gdi~~L~e~i~~~ 310 (411)
..............++.. ..++.+..-....+...+|++ .|.| ++++++.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~e~Sa~~~~~g-i~~l~~~i~~~ 180 (184)
T 1m7b_A 126 DVSTLVELSNHRQTPVSY-DQGANMAKQIGAATYIECSALQSENS-VRDIFHVATLA 180 (184)
T ss_dssp CHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCSEEEECBTTTBHHH-HHHHHHHHHHH
T ss_pred chhhHhhhhhcccCCCCH-HHHHHHHHHcCCcEEEEeeecCCCcC-HHHHHHHHHHH
Confidence 321111110000000100 000111000012344568998 6888 99999988765
No 233
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.64 E-value=4.7e-08 Score=86.73 Aligned_cols=165 Identities=21% Similarity=0.117 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|++||||||+++.|+ +........ + ....++.+....... .....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~------~~~~~~~~~--~-----------~~t~g~~~~~~~~~~----------~~~~~ 53 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLM------KTKKSDLGM--Q-----------SATVGIDVKDWPIQI----------RDKRK 53 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHT------CC------------------------CSEEEEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHh------cCCCccCCC--c-----------ceeccEEeEEeeecc----------ccCCC
Confidence 358999999999999999998 532111110 0 011222222110000 00001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.+.||||..... .+.. .....++.+++|.|.+.++...+ ....+.. .-.+..+|.||+|....
T Consensus 54 ~~~~~~i~Dt~G~~~~~-----~~~~-~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 54 RDLVLNVWDFAGREEFY-----STHP-HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp --CEEEEEEECSHHHHH-----TTSH-HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred CceEEEEEecCCCHHHH-----HhhH-HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 25788999999953111 1110 01113578888999876532222 1122221 12345677799998543
Q ss_pred hhhHHHHHHhcCCCeEEecccccccccccCC---cchhhhhhcCC-CCHHHHHHHHHhhCC
Q 015221 256 GGGALSAVAATKSPVIFIGTGEHMDEFEVFD---VKPFVSRLLGM-GDWSGFMDKIHEVVP 312 (411)
Q Consensus 256 ~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~---p~~~vs~~~g~-Gdi~~L~e~i~~~~~ 312 (411)
... -..... .++.+..-..+. +...+|++.|. | ++.|++.+.+.+.
T Consensus 128 ~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~Sa~~~~~~-~~~l~~~i~~~~~ 177 (184)
T 2zej_A 128 KQR-KACMSK---------ITKELLNKRGFPAIRDYHFVNATEESDA-LAKLRKTIINESL 177 (184)
T ss_dssp HHH-HHHHHH---------HHHHTTTCTTSCEEEEEEECCTTSCCHH-HHHHHHHHHHHHH
T ss_pred hhh-HHHHHH---------HHHHHHHhcCCcchhheEEEecccCchh-HHHHHHHHHHHHh
Confidence 211 000000 001111000111 23558999996 8 9999998877653
No 234
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.64 E-value=1.2e-07 Score=105.55 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+...|+++|.+|+||||++++|.....+.|..... .+. ..+.+.. ....|+.+.... ..+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~----~~a--~lD~~~~-ErerGITIdva~-------------v~f 354 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAR----AFD--QIDNAPE-EKARGITINTSH-------------VEY 354 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC----------------------------CCSC-------------EEE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccc----ccc--ccccccc-cccCceeEEEEE-------------EEE
Confidence 34679999999999999999998765544421100 000 0000000 001112111000 001
Q ss_pred hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHHHHHhc-cCCceEEEEeCCCCCCCh
Q 015221 180 KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQAQAFKQ-SVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 180 ~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a~~f~~-~~~~~~vIlnK~D~~~~~ 256 (411)
...++.+.|+||||.. ++...+ ......+|.+++|+|++.+. ...+....... .++...+++||+|.....
T Consensus 355 ~~~~~kI~IIDTPGHe----dF~~~m--i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~ 428 (1289)
T 3avx_A 355 DTPTRHYAHVDCPGHA----DYVKNM--ITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE 428 (1289)
T ss_dssp ECSSCEEEEEECCCHH----HHHHHH--HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH
T ss_pred cCCCEEEEEEECCChH----HHHHHH--HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch
Confidence 1236889999999964 222222 22344789999999998762 22222222222 233246789999986532
Q ss_pred hh-------HHHHHHhcCCCeEEecccccccccccCCcchhhhhhcC--------CCCHHHHHHHHHhhCCC
Q 015221 257 GG-------ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG--------MGDWSGFMDKIHEVVPM 313 (411)
Q Consensus 257 g~-------~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g--------~Gdi~~L~e~i~~~~~~ 313 (411)
.. ....+...+.+ ....|..++|++.| .| +..|++.+.+.++.
T Consensus 429 e~le~i~eEi~elLk~~G~~-------------~~~vp~IpvSAktG~ng~~~w~eG-I~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 429 ELLELVEMEVRELLSQYDFP-------------GDDTPIVRGSALKALEGDAEWEAK-ILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-------------TTTCCEEECCSTTTTTCCHHHHHH-HHHHHHHHHHTSCC
T ss_pred hhHHHHHHHHHHHHHhcccc-------------ccceeEEEEEeccCCCCCcccccc-chhhHhHHhhhcCC
Confidence 11 11122222210 00124455677776 45 88999999887753
No 235
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.63 E-value=1.7e-06 Score=80.34 Aligned_cols=168 Identities=10% Similarity=0.107 Sum_probs=88.3
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEec-----cCcCcchH--HHHHHHhhhh------cCcceeccCC--
Q 015221 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVC-----ADTFRAGA--FDQLKQNATK------AKIPFYGSYT-- 164 (411)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~-----~D~~r~~a--~~qL~~~~~~------~~v~~~~~~~-- 164 (411)
.+.++++|. +|+||||++..|+..|+++|++|...- +|....+. .+-+...+.. .+.-.+....
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~p~sp 83 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESILNAYKHKFTAAEINLISFNQAVAP 83 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHHHHTTTSSCHHHHCSEEESSSSCH
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHHHhcCCCCChhhEEEEEECCCCCH
Confidence 467889998 599999999999999999999988764 22111110 1111111111 1111111000
Q ss_pred -------C-CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcc--hHH-HHHHHHHHHHhcCCCeeEEEeeCcchh--hHHH
Q 015221 165 -------E-SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ--EAA-LFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFD 231 (411)
Q Consensus 165 -------~-~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~--~~~-l~~el~~i~~~~~~d~vllVvda~~g~--~~~~ 231 (411)
. .-..+...+.+......+||++|||+||.... ... .... +.... ...+++|+++..+. ....
T Consensus 84 ~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~ad---la~~l-~~pviLV~~~~~~~i~~~~~ 159 (228)
T 3of5_A 84 HIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLD---LIKAL-QIPVLLVSAIKVGCINHTLL 159 (228)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHH---HHHHH-TCCEEEEEECSTTHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHH---HHHHc-CCCEEEEEcCCcchHHHHHH
Confidence 0 00112233333331236899999999874311 110 1111 11111 24578899987552 2222
Q ss_pred HHHHH-hccCCceEEEEeCCCCCC-ChhhHHHHH-HhcCCCeEE
Q 015221 232 QAQAF-KQSVSVGAVIVTKMDGHA-KGGGALSAV-AATKSPVIF 272 (411)
Q Consensus 232 ~a~~f-~~~~~~~~vIlnK~D~~~-~~g~~l~~~-~~~g~Pi~f 272 (411)
....+ ...+++.|+|+|+++... ........+ ..+|.|+.-
T Consensus 160 ~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~g~pvLG 203 (228)
T 3of5_A 160 TINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSA 203 (228)
T ss_dssp HHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHHSCCCSE
T ss_pred HHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhhCCCEEE
Confidence 22222 344677899999998753 223334433 447888744
No 236
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.60 E-value=3.2e-08 Score=90.39 Aligned_cols=169 Identities=14% Similarity=0.068 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. ..+.+. .+..+..... ..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~------~~~~~----~~~~~t-----------~~~~~~~~~~--------------~~ 71 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLA------KDCYP----ETYVPT-----------VFENYTACLE--------------TE 71 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH------HSCCC----SSCCCC-----------SEEEEEEEEE--------------C-
T ss_pred eEEEEEECcCCCCHHHHHHHHh------cCCCC----CCcCCe-----------eeeeEEEEEE--------------EC
Confidence 4679999999999999999998 32211 011110 0000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. -.....+|.+++|+|++....... ....+... -.+..+|.||+|+..
T Consensus 72 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 72 EQRVELSLWDTSGSPYYDN-----VR-PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp -CEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCCHhHHH-----HH-HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 1246789999999642211 10 011236799999999986532222 12222221 235678899999854
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...............+ -...++.+..-..+.+...+|++.|.|.++.+++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 146 DLSTLMELSHQKQAPI-SYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CHHHHHHHHHTTCCCC-CHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccCcc-CHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 2111111100000000 0000011100011223455888888855888888887765
No 237
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.59 E-value=4.9e-08 Score=88.66 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++|. +.+.. +.+.+.. +..+..... ..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~------~~~~~----~~~~~t~-----------~~~~~~~~~--------------~~ 72 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFA------KDCFP----ENYVPTV-----------FENYTASFE--------------ID 72 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH------HSCCC----SSCCCCS-----------EEEEEEEEE--------------SS
T ss_pred eeEEEEECCCCCCHHHHHHHHh------cCCCC----CCcCCcc-----------ceeEEEEEE--------------EC
Confidence 4679999999999999999998 32211 1111100 000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH----HHHHHhc--cCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD----QAQAFKQ--SVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~----~a~~f~~--~~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. -.....+|.+++|+|++......+ ....+.. .-.+..+|.||+|...
T Consensus 73 ~~~~~l~i~Dt~G~~~~~~-----~~-~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 73 TQRIELSLWDTSGSPYYDN-----VR-PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp SSEEEEEEEEECCSGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEeCCCcHhhhH-----HH-HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 1246789999999642211 10 011236799999999986532211 1122222 1235678899999854
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhh-cCCCCHHHHHHHHHhh
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL-LGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~-~g~Gdi~~L~e~i~~~ 310 (411)
..............++.. ..++.+..-....+...+|++ .|.| ++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~e~SAk~~~~g-v~~lf~~l~~~ 201 (205)
T 1gwn_A 147 DVSTLVELSNHRQTPVSY-DQGANMAKQIGAATYIECSALQSENS-VRDIFHVATLA 201 (205)
T ss_dssp CHHHHHHHHTTTCCCCCH-HHHHHHHHHHTCSEEEECCTTTCHHH-HHHHHHHHHHH
T ss_pred chhhhhhhcccccCCCCH-HHHHHHHHHcCCCEEEEeeeccCCcC-HHHHHHHHHHH
Confidence 321111110000000100 000111000011244568888 5788 99999888664
No 238
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.58 E-value=1.8e-08 Score=97.41 Aligned_cols=168 Identities=14% Similarity=0.057 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||+++++. +.+. ... +.+. . +..+..... ..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~------~~~~--~~~--~~~t---------~--~~~~~~~~~--------------~~ 199 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYT------TNAF--PGE--YIPT---------V--FDNYSANVM--------------VD 199 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH------HSCC--CCS--CCCC---------S--EEEEEEEEE--------------ET
T ss_pred eeEEEEECCCCCChHHHHHHHH------hCCC--Ccc--cCCc---------c--cceeEEEEE--------------EC
Confidence 3569999999999999999998 2211 000 1100 0 000000000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHHH----HHHHhcc--CCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFDQ----AQAFKQS--VSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~----a~~f~~~--~~~~~vIlnK~D~~~ 254 (411)
...+.+.|+||||...... +. ......+|.+++|+|++......+. ...+... ..+..+|.||+|...
T Consensus 200 ~~~~~~~l~Dt~G~~~~~~-----~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 200 GKPVNLGLWDTAGLEDYDR-----LR-PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp TEEEEEEEEEECCCGGGTT-----TG-GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred CEEEEEEEEeCCCchhhhH-----HH-HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 1135566999999643221 10 0112367999999999865322221 1222221 235688999999844
Q ss_pred ChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 255 ~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
... .................++....-..+.+...+|++.|.| ++.+++.+.+.+
T Consensus 274 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~l~~~~ 328 (332)
T 2wkq_A 274 DKD-TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG-LKTVFDEAIRAV 328 (332)
T ss_dssp CHH-HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred ccc-hhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcC-HHHHHHHHHHHH
Confidence 321 1111111110000000001110001122456689999999 999999887654
No 239
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.54 E-value=1.4e-07 Score=99.40 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
.++++.|.+|+||||++.+||..++++|++|+++|+|++.
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 4566679999999999999999999999999999999863
No 240
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.53 E-value=1.7e-07 Score=86.79 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc-C---CCCChHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-Y---TESDPVRIAVEGVE 177 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~-~---~~~d~~~i~~~~l~ 177 (411)
..|.+.|++||||||++.++|..++++|++|.+++.|++.......+..........+... + ...+...+ +
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~----L- 81 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDAL----L- 81 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHH----H-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHH----H-
Confidence 5588889999999999999999999999999999999987655443332221111001110 0 11221111 1
Q ss_pred HHhcCCCCEEEEeCCCCC
Q 015221 178 TFKKENCDLIIVDTSGRH 195 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~ 195 (411)
...+|++|||.+|..
T Consensus 82 ---~~~pdlvIVDElG~~ 96 (228)
T 2r8r_A 82 ---KAAPSLVLVDELAHT 96 (228)
T ss_dssp ---HHCCSEEEESCTTCB
T ss_pred ---hcCCCEEEEeCCCCC
Confidence 136999999999975
No 241
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=98.53 E-value=1.8e-08 Score=75.38 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHhCCCHHhhcCcccH
Q 015221 367 KESQAKIKRYMTMMDSMTNEGKQLLFMC 394 (411)
Q Consensus 367 ~~~~~~~~~~~~ii~smt~~e~~~~~~~ 394 (411)
+.+++++++++|||+|||++||+||..+
T Consensus 6 ~~~e~~lkr~~aII~SMT~~Er~nP~ii 33 (69)
T 1dul_A 6 FLEQKVLVRMEAIINSMTMKERAKPEII 33 (69)
T ss_dssp HHHCCHHHHHHHHHHTSCHHHHHCGGGC
T ss_pred hhhHHHHHHHHHHHHcCCHHHHhCcccc
Confidence 4578899999999999999999999876
No 242
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.51 E-value=2.8e-07 Score=89.23 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..|+++|.+||||||+++++. +.....++.. .....++.+.... . .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~------~~~~~~~~~~------------~~~Ti~~~~~~~~---------------~-~ 49 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIF------SNYSAFDTRR------------LGATIDVEHSHLR---------------F-L 49 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHH------SCCCTGGGGG------------CCCCCSEEEEEEE---------------E-T
T ss_pred eEEEEECCCCCCHHHHHHHHH------hCCCCccccC------------cCCccceEEEEEE---------------e-C
Confidence 569999999999999999988 5432222210 0111112111100 0 1
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HHH----HHHHHhc--cCCceEEEEeCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AFD----QAQAFKQ--SVSVGAVIVTKMDGH 253 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~~----~a~~f~~--~~~~~~vIlnK~D~~ 253 (411)
+++.+.|+||||.....+.....+. -.....+|.+++|+|++.... ... ....+.. .-.+..+|+||+|+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~-~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQK-DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTH-HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CceEEEEEECCCcHHHhhhhhhhHH-HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 2578899999997422111111111 111236899999999986532 111 1222221 123568899999986
Q ss_pred C
Q 015221 254 A 254 (411)
Q Consensus 254 ~ 254 (411)
.
T Consensus 129 ~ 129 (307)
T 3r7w_A 129 Q 129 (307)
T ss_dssp C
T ss_pred c
Confidence 5
No 243
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.51 E-value=1.4e-07 Score=96.83 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh---------hHHHHHHHHh-ccCCceEEEEeCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ---------AAFDQAQAFK-QSVSVGAVIVTKMD 251 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---------~~~~~a~~f~-~~~~~~~vIlnK~D 251 (411)
+++.+.|+||||.... ...+ ......+|.+++|+|++.+. ...+.+.... ..++...+++||+|
T Consensus 119 ~~~~~~iiDtPGh~~f----~~~~--~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~D 192 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGY----VTNM--INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192 (467)
T ss_dssp SSEEEEECCCCC-----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred CCeEEEEEECCCcHHH----HHHH--HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECcc
Confidence 4678999999997432 2222 22334789999999998762 2222222222 22333578899999
Q ss_pred CCC
Q 015221 252 GHA 254 (411)
Q Consensus 252 ~~~ 254 (411)
...
T Consensus 193 l~~ 195 (467)
T 1r5b_A 193 EPS 195 (467)
T ss_dssp STT
T ss_pred CCC
Confidence 853
No 244
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.49 E-value=1.6e-07 Score=84.11 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=78.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...|+++|.+||||||++++++ |.+..+++. .. ..+..++..... ..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~------~~~~~~~~~-----------~~---~~~~~~~~~~~~-------------~~ 52 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFA------GVHDSMDSD-----------XE---VLGEDTYERTLM-------------VD 52 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH------HHSCCC---------------G---GGCTTEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHh------cCcCCcCcc-----------cc---ccceeEEEEEEE-------------EC
Confidence 3569999999999999999998 422222221 00 011111110000 00
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhh--HH-HH---HHHHhc-cCCceEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQA--AF-DQ---AQAFKQ-SVSVGAVIVTKMDGH 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~--~~-~~---a~~f~~-~~~~~~vIlnK~D~~ 253 (411)
...+.++++||+|...... .+.. .....+|.+++|.|.+.... .. .. ...... .-.+..+|.||+|+.
T Consensus 53 ~~~~~l~~~Dt~~~~~~~~----~~~~-~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 53 GESATIILLDMWENKGENE----WLHD-HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp TEEEEEEEECCCCC----C----TTGG-GHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred CeEEEEEEEEeccCcchhh----hHHH-hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 1134668899999643110 0110 01113588888888864321 11 11 112211 123467889999974
Q ss_pred CChhhHHHHHHhcCCCeEEecccccccccccC-CcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVF-DVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 254 ~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f-~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
......... |+... ..+ .+...+|++.|.| ++.+++.+.+.+
T Consensus 128 ~~r~v~~~~-------------~~~~a--~~~~~~~~e~SA~~g~~-v~~lf~~l~~~~ 170 (192)
T 2cjw_A 128 RXREVSVSE-------------GRAXA--VVFDXKFIETSAAVQHN-VKELFEGIVRQV 170 (192)
T ss_dssp GGCCSCHHH-------------HHHHH--HHTTCEEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred ccccccHHH-------------HHHHH--HHhCCceEEeccccCCC-HHHHHHHHHHHH
Confidence 321000100 00000 001 1334589999999 999999887765
No 245
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.46 E-value=3e-07 Score=82.52 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|++||||||+++.|+ |........ | ..++++..... ....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~------~~~~~~~~~----~-----------t~~~~~~~~~i-------------~~~g 51 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFT------RNEFNLESK----S-----------TIGVEFATRSI-------------QVDG 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHH------HSCCCC-------C-----------CCSCEEEEEEE-------------EETT
T ss_pred EEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------ccceeEEEEEE-------------EECC
Confidence 568999999999999999999 543211110 0 00111100000 0001
Q ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH---HHHHHHhc---cCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF---DQAQAFKQ---SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~---~~a~~f~~---~~~~~~vIlnK~D~~~~ 255 (411)
..+.+.+.||||...... +.. .....++.+++|.|.+...... .....+.. ...+..+|+||+|....
T Consensus 52 ~~~~~~i~Dt~g~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 52 KTIKAQIWDTAGQERYRR-----ITS-AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEEECSSGGGTTC-----CCH-HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEEEEECCCchhhhh-----hhH-HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 124667899999642110 000 1112568899999987543211 11122211 22346788999998532
Q ss_pred h----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 256 G----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 256 ~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
. ..+.......++ +...+|++.|.| ++.+++.+.+.+
T Consensus 126 ~~~~~~~a~~l~~~~~~------------------~~~d~Sal~~~~-i~~l~~~l~~~~ 166 (199)
T 2f9l_A 126 RAVPTDEARAFAEKNNL------------------SFIETSALDSTN-VEEAFKNILTEI 166 (199)
T ss_dssp CCSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCC------------------eEEEEeCCCCCC-HHHHHHHHHHHH
Confidence 1 112222221111 112278899999 999998887654
No 246
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.46 E-value=1.8e-07 Score=94.51 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhh-cCcceeccCCCCChHHHHHHHHHHHh
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~-~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..++|+|++|||||||++.|+ +.++.+-+. ++ ++. ..+.+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Ls------g~~~~i~~~-~f-----------tTl~p~~G~V~------------------- 200 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMT------RAHPKIAPY-PF-----------TTLSPNLGVVE------------------- 200 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHC------SSCCEECCC-TT-----------CSSCCEEEEEE-------------------
T ss_pred CEEEEECCCCCcHHHHHHHHH------cCCccccCc-cc-----------ceecceeeEEE-------------------
Confidence 458999999999999999998 766533221 11 000 0010000
Q ss_pred cC-CCCEEEEeCCCCCcchHH---HHHHHHHHHHhcCCCeeEEEeeCc-chhhHHH----HHHHHhcc--CCceEEEEeC
Q 015221 181 KE-NCDLIIVDTSGRHKQEAA---LFEEMRQVSEATNPDLVIFVMDSS-IGQAAFD----QAQAFKQS--VSVGAVIVTK 249 (411)
Q Consensus 181 ~~-~~d~viIDTaG~~~~~~~---l~~el~~i~~~~~~d~vllVvda~-~g~~~~~----~a~~f~~~--~~~~~vIlnK 249 (411)
.. ...+.+.||||....... +.... +.....++.++.|+|++ ....... +...+... ..+..+|+||
T Consensus 201 ~~~~~~~~l~DtpGli~~a~~~~~L~~~f--l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNK 278 (416)
T 1udx_A 201 VSEEERFTLADIPGIIEGASEGKGLGLEF--LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 278 (416)
T ss_dssp CSSSCEEEEEECCCCCCCGGGSCCSCHHH--HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEEC
T ss_pred ecCcceEEEEeccccccchhhhhhhhHHH--HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEEC
Confidence 11 257899999997432110 10011 12233578999999986 2111111 11222111 1356888999
Q ss_pred CCCCCChhhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhhCC
Q 015221 250 MDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVP 312 (411)
Q Consensus 250 ~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~~~ 312 (411)
+|.... ..+..+.. .+.. .-.+..++|+..|.| ++.|++.+.+.+.
T Consensus 279 lDl~~~--~~~~~l~~------------~l~~--~g~~vi~iSA~~g~g-i~eL~~~i~~~l~ 324 (416)
T 1udx_A 279 VDLLEE--EAVKALAD------------ALAR--EGLAVLPVSALTGAG-LPALKEALHALVR 324 (416)
T ss_dssp CTTSCH--HHHHHHHH------------HHHT--TTSCEEECCTTTCTT-HHHHHHHHHHHHH
T ss_pred CChhhH--HHHHHHHH------------HHHh--cCCeEEEEECCCccC-HHHHHHHHHHHHH
Confidence 998654 22221110 0000 012446688888888 8888888877663
No 247
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=98.45 E-value=4.7e-06 Score=78.52 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=88.6
Q ss_pred CCeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEec-----cCcCcchHHHHHHHhhhhcC-c-ce-eccC-------
Q 015221 100 KPSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVC-----ADTFRAGAFDQLKQNATKAK-I-PF-YGSY------- 163 (411)
Q Consensus 100 ~~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~-----~D~~r~~a~~qL~~~~~~~~-v-~~-~~~~------- 163 (411)
..+.++|+|.. |+||||++..|+..|+++|++|...- +.+.. .....++..+.... . ++ +...
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~-~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa 103 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGD-DDLAEVGRLAGVTQLAGLARYPQPMAPAAAA 103 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTC-CHHHHHHHHHCCCEEEEEEECSSSSCHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCC-HHHHHHHHHcCCCCCCCCeeECCCCChHHHH
Confidence 34678889887 99999999999999999999998765 21100 11122222221110 0 11 1000
Q ss_pred --CC--CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcc--hHH--HHHHHHHHHHhcCCCeeEEEeeCcchh--hHHHHH
Q 015221 164 --TE--SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ--EAA--LFEEMRQVSEATNPDLVIFVMDSSIGQ--AAFDQA 233 (411)
Q Consensus 164 --~~--~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~--~~~--l~~el~~i~~~~~~d~vllVvda~~g~--~~~~~a 233 (411)
.. .-..+...+.++.+ ..+||++|||+||-... .+. .... +... -...+++|+|+..+. ......
T Consensus 104 ~~~~~~~~~~~~i~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~~ad---la~~-l~~pVILV~~~~~g~i~~~~lt~ 178 (251)
T 3fgn_A 104 EHAGMALPARDQIVRLIADL-DRPGRLTLVEGAGGLLVELAEPGVTLRD---VAVD-VAAAALVVVTADLGTLNHTKLTL 178 (251)
T ss_dssp HHTTCCCCCHHHHHHHHHTT-CCTTCEEEEECSSSTTCEEETTTEEHHH---HHHH-TTCEEEEEECSSTTHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHH-HhcCCEEEEECCCCCcCCcCcccchHHH---HHHH-cCCCEEEEEcCCCccHHHHHHHH
Confidence 00 01112233333332 35799999999875421 111 1111 2222 235688999987552 222222
Q ss_pred HHH-hccCCceEEEEeCCCCCCC--hhhHHHHHHhcCCCeEE
Q 015221 234 QAF-KQSVSVGAVIVTKMDGHAK--GGGALSAVAATKSPVIF 272 (411)
Q Consensus 234 ~~f-~~~~~~~~vIlnK~D~~~~--~g~~l~~~~~~g~Pi~f 272 (411)
..+ ...+++.|+|+||+..... .......++.. +|+.-
T Consensus 179 ~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~-vpvLG 219 (251)
T 3fgn_A 179 EALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARI-AMVRA 219 (251)
T ss_dssp HHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHH-SCEEE
T ss_pred HHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHh-CCEEE
Confidence 322 3456789999999864321 12234445545 77653
No 248
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.45 E-value=1.2e-06 Score=86.80 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCCCChhhHHH----HHHhcCCCeEEec--ccccccccccCCcchhhhh--hcCCCCHHHHHHHHHhhC
Q 015221 241 SVGAVIVTKMDGHAKGGGALS----AVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSR--LLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 241 ~~~~vIlnK~D~~~~~g~~l~----~~~~~g~Pi~fi~--~Ge~i~~l~~f~p~~~vs~--~~g~Gdi~~L~e~i~~~~ 311 (411)
.+..++.|+.|....+...+. .....+.|+..++ ..+.+.++.+-....|.+. +.+.| ++.+++++-+.+
T Consensus 200 KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~g-l~~li~~~~~~L 277 (363)
T 1jal_A 200 KPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPG-LNRVIRAGYALL 277 (363)
T ss_dssp SCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCT-THHHHHHHHHHT
T ss_pred CcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCccccc-HHHHHHHHHHHh
Confidence 456788999886532112222 2223467777776 4455555554333445552 23467 999999988877
No 249
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.33 E-value=5.4e-06 Score=89.29 Aligned_cols=128 Identities=21% Similarity=0.145 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH---HcCC---CceEeccCcCcchHHHHHHHhhhh-cCcceeccCCCCChHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ---KKGW---KPALVCADTFRAGAFDQLKQNATK-AKIPFYGSYTESDPVRIAV 173 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~---~~g~---kv~lV~~D~~r~~a~~qL~~~~~~-~~v~~~~~~~~~d~~~i~~ 173 (411)
-+.|+|+|..++|||||+-+|..+-. +.|. +....|.+. .||-+..+-. ..+.++-....
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~-----~E~eRGITI~s~~~s~~~~~~~-------- 79 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMV-----QEQERGITITSAAVTTFWKGSR-------- 79 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-----------------------------CCEEEEEECCTT--------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChH-----HHHHcCCeEEeeeEEEEeccCc--------
Confidence 36799999999999999999986542 2231 111112110 0111111100 11111110110
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHHH--HHH-HHhccCCceEEEEeCC
Q 015221 174 EGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAFD--QAQ-AFKQSVSVGAVIVTKM 250 (411)
Q Consensus 174 ~~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~--~a~-~f~~~~~~~~vIlnK~ 250 (411)
.+.++|-+-||||||......+.. +...+ .|.+++|+|+..|-.... ..+ .....++ ..+++||+
T Consensus 80 -----~~~~~~~iNlIDTPGHvDF~~Ev~----~aLr~--~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKi 147 (709)
T 4fn5_A 80 -----GQYDNYRVNVIDTPGHVDFTIEVE----RSLRV--LDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKM 147 (709)
T ss_dssp -----SCSCCEEEEEECCCSCTTCHHHHH----HHHHH--CSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECS
T ss_pred -----CCCCCEEEEEEeCCCCcccHHHHH----HHHHH--hCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccc
Confidence 012357889999999976655433 32333 499999999998733221 222 2333444 58899999
Q ss_pred CCC
Q 015221 251 DGH 253 (411)
Q Consensus 251 D~~ 253 (411)
|..
T Consensus 148 Dr~ 150 (709)
T 4fn5_A 148 DRQ 150 (709)
T ss_dssp SST
T ss_pred ccc
Confidence 974
No 250
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.31 E-value=8.9e-07 Score=79.08 Aligned_cols=151 Identities=14% Similarity=0.058 Sum_probs=77.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
...++++|++||||||+++.|+ |........ + ..++.+.. .. + ...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~------~~~~~~~~~----~-----------t~~~~~~~-~~----i--------~~~ 74 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFT------RNEFNLESK----S-----------TIGVEFAT-RS----I--------QVD 74 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH------HSCCCCSCC----C-----------CCSEEEEE-EE----E--------EET
T ss_pred ceEEEEECcCCCCHHHHHHHHh------cCCCCCCCC----C-----------ccceEEEE-EE----E--------EEC
Confidence 3579999999999999999998 433211111 0 00111100 00 0 000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhH---HHHHHHHh---ccCCceEEEEeCCCCCC
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAA---FDQAQAFK---QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~a~~f~---~~~~~~~vIlnK~D~~~ 254 (411)
...+.+.+.||||...... +. . .....++.+++|.|.+..... ......+. ....+..+|+||+|...
T Consensus 75 g~~~~~~i~Dt~g~~~~~~-~~---~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 75 GKTIKAQIWDTAGLERYRA-IT---S--AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp TEEEEEEEEEECSCCSSSC-CC---H--HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CEEEEEEEEECCCCcchhh-hh---H--HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 0123456799999643211 00 0 011245788999998754221 11112222 12234678899999743
Q ss_pred Ch----hhHHHHHHhcCCCeEEecccccccccccCCcchhhhhhcCCCCHHHHHHHHHhh
Q 015221 255 KG----GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEV 310 (411)
Q Consensus 255 ~~----g~~l~~~~~~g~Pi~fi~~Ge~i~~l~~f~p~~~vs~~~g~Gdi~~L~e~i~~~ 310 (411)
.. ..+..+....+. +...+|++.+.| ++.+++.+.+.
T Consensus 149 ~~~~~~~~a~~l~~~~~~------------------~~ld~Sald~~~-v~~l~~~l~~~ 189 (191)
T 1oix_A 149 LRAVPTDEARAFAEKNGL------------------SFIETSALDSTN-VEAAFQTILTE 189 (191)
T ss_dssp GCCSCHHHHHHHHHHTTC------------------EEEECCTTTCTT-HHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCC------------------EEEEEeCCCCCC-HHHHHHHHHHH
Confidence 21 112222221111 112278899999 99999887654
No 251
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.27 E-value=4.1e-07 Score=90.53 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|.+|+||||++|.|.........+...++. .|+ +++.-..+ .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~---~~g--------tT~~~~~~-~-------------------- 208 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH---FPG--------TTLDLIDI-P-------------------- 208 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEEC---CC------------CEEEE-E--------------------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCC---CCC--------eecceEEE-E--------------------
Confidence 359999999999999999998543211012222333 111 11111110 0
Q ss_pred CCCCEEEEeCCCCCcch--HH-H-HHHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEEEEeCCCCCCC
Q 015221 182 ENCDLIIVDTSGRHKQE--AA-L-FEEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 182 ~~~d~viIDTaG~~~~~--~~-l-~~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~vIlnK~D~~~~ 255 (411)
-+..+.++||||..... .. + .+++..+......+.+++++++... .........+...-.+..+++||.|...+
T Consensus 209 ~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 209 LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence 02347999999986432 11 1 1223333333466788999998321 11111011111111245789999998654
No 252
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.24 E-value=5.7e-05 Score=70.67 Aligned_cols=148 Identities=12% Similarity=0.159 Sum_probs=81.8
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHHHHHHcCCCceEec-----cCcC--cchHHHHH-HHhhhhc-Cc------ceeccCC
Q 015221 101 PSVIMFVGL-QGSGKTTTCTKYAYYHQKKGWKPALVC-----ADTF--RAGAFDQL-KQNATKA-KI------PFYGSYT 164 (411)
Q Consensus 101 ~~vI~lvG~-~GvGKTTl~~kLa~~l~~~g~kv~lV~-----~D~~--r~~a~~qL-~~~~~~~-~v------~~~~~~~ 164 (411)
.+.++|+|. +|+|||+++..|+..|+++|++|...- +++. .......+ +...... ++ |+.-...
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p 100 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV 100 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCC
Confidence 467888988 599999999999999999999998875 3221 11111112 1101111 22 1111000
Q ss_pred ----------C---CChHHHHHHHHHHHhcCCCCEEEEeCCCCCcc---hHHHHHHHHHHHHhcCCCeeEEEeeCcchh-
Q 015221 165 ----------E---SDPVRIAVEGVETFKKENCDLIIVDTSGRHKQ---EAALFEEMRQVSEATNPDLVIFVMDSSIGQ- 227 (411)
Q Consensus 165 ----------~---~d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~---~~~l~~el~~i~~~~~~d~vllVvda~~g~- 227 (411)
. .-..+.+.+.+..+ ...||++|||+||.... +......+ .... ...+++|+++..+.
T Consensus 101 ~sp~~aa~~~g~~~~i~~~~I~~~~~~l-~~~~D~vlIEGagGl~~pl~~~~~~adl---A~~l-~~pVILV~~~~lg~i 175 (242)
T 3qxc_A 101 SAPLIAQQEEDPNAPIDTDNLTQRLHNF-TKTYDLVIVEGAGGLCVPITLEENMLDF---ALKL-KAKMLLISHDNLGLI 175 (242)
T ss_dssp SCHHHHHHHHCTTCCCCHHHHHHHHHHG-GGTCSEEEEECCSCTTCBSSSSCBHHHH---HHHH-TCEEEEEECCSTTHH
T ss_pred CChHHHHHHcCCCCcCCHHHHHHHHHHH-HhcCCEEEEECCCCccccccccchHHHH---HHHc-CCCEEEEEcCCCcHH
Confidence 0 11122334444443 35799999999885421 11111111 1111 24589999987662
Q ss_pred -hHHHHHHHHh-ccCCceEEEEeCCCCCC
Q 015221 228 -AAFDQAQAFK-QSVSVGAVIVTKMDGHA 254 (411)
Q Consensus 228 -~~~~~a~~f~-~~~~~~~vIlnK~D~~~ 254 (411)
........+. ..++ .|+|+|+++...
T Consensus 176 ~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 176 NDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp HHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred HHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 2222333333 4567 899999998754
No 253
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.23 E-value=3e-06 Score=79.95 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+.+|+++|+|||||||++..|+.+|...|+.+.+++.|.+|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 57899999999999999999999998889888778887654
No 254
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.23 E-value=1.8e-07 Score=93.18 Aligned_cols=137 Identities=11% Similarity=0.029 Sum_probs=70.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKKE 182 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~~ 182 (411)
.++++|.+|+||||++|.|........ +...++. .+.+++....+ . -
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~-~~~~~~~-----------~~gtT~~~~~~-~--------------------~ 210 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKG-NVITTSY-----------FPGTTLDMIEI-P--------------------L 210 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTT-CCCEEEE-----------CTTSSCEEEEE-E--------------------C
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCc-cceeecC-----------CCCeEEeeEEE-E--------------------e
Confidence 499999999999999999996544322 2333333 11111111110 0 0
Q ss_pred CCCEEEEeCCCCCcch---HHHH-HHHHHHHHhcCCCeeEEEeeCcch--hhHHHHHHHHhccCCceEEEEeCCCCCCCh
Q 015221 183 NCDLIIVDTSGRHKQE---AALF-EEMRQVSEATNPDLVIFVMDSSIG--QAAFDQAQAFKQSVSVGAVIVTKMDGHAKG 256 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~---~~l~-~el~~i~~~~~~d~vllVvda~~g--~~~~~~a~~f~~~~~~~~vIlnK~D~~~~~ 256 (411)
+..+.++||||..... ..+. +++..+......+.+++++++... .........+...-.+..+++||.|...+.
T Consensus 211 ~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 211 ESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp STTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccc
Confidence 2347999999986432 1111 122233222467889999998421 111111111111112457889999985442
Q ss_pred --hhHHH-HHHhcCCCeEE
Q 015221 257 --GGALS-AVAATKSPVIF 272 (411)
Q Consensus 257 --g~~l~-~~~~~g~Pi~f 272 (411)
..+.+ .....|.++..
T Consensus 291 ~~~~~~~~~~~~~g~~l~p 309 (369)
T 3ec1_A 291 KLEKADSLYANQLGELLSP 309 (369)
T ss_dssp EGGGHHHHHHHHBTTTBCS
T ss_pred cHHHHHHHHHHhcCCccCC
Confidence 23333 33445655443
No 255
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=6e-06 Score=81.83 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa 122 (411)
..|+++|++|+||||+++.|.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHh
Confidence 458999999999999999987
No 256
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.21 E-value=3.7e-06 Score=83.57 Aligned_cols=70 Identities=7% Similarity=0.102 Sum_probs=39.4
Q ss_pred CceEEEEeCCCCCC-Ch--hhHH----HHHHhcCCCeEEec--ccccccccccCCcchhhhh--hcCCCCHHHHHHHHHh
Q 015221 241 SVGAVIVTKMDGHA-KG--GGAL----SAVAATKSPVIFIG--TGEHMDEFEVFDVKPFVSR--LLGMGDWSGFMDKIHE 309 (411)
Q Consensus 241 ~~~~vIlnK~D~~~-~~--g~~l----~~~~~~g~Pi~fi~--~Ge~i~~l~~f~p~~~vs~--~~g~Gdi~~L~e~i~~ 309 (411)
.+..++.||.|..- .. ...+ ......|.|+..++ +++.+.++.+-....|.+. +.+.| ++.|++++-+
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~g-l~~li~~~~~ 280 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESG-LQRLARAGYR 280 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCH-HHHHHHHHHH
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhh-HHHHHHHHHH
Confidence 35677889987421 11 1111 22233467777777 5666666544222334442 22467 8999998888
Q ss_pred hC
Q 015221 310 VV 311 (411)
Q Consensus 310 ~~ 311 (411)
.+
T Consensus 281 ~L 282 (368)
T 2dby_A 281 AL 282 (368)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 257
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.20 E-value=1.1e-06 Score=96.42 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchhhHH--HHHHHHhccCCceEEEEeCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQAAF--DQAQAFKQSVSVGAVIVTKMDGH 253 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~--~~a~~f~~~~~~~~vIlnK~D~~ 253 (411)
++.+.|+||||.......... ....+|.+++|+|++.+.... .........-.+..+|+||+|..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~------~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTA------ALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHH------HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHH------HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 578899999998654432221 123679999999998763222 22222222223457899999974
No 258
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.16 E-value=2e-07 Score=84.12 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKG 129 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g 129 (411)
+++++|++|+||||++..|+..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 589999999999999999999988556
No 259
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.13 E-value=2.4e-05 Score=70.61 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+++++|++|+||||++..++. ..|.++..++.+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 5799999999999999999998 5588999999875
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.12 E-value=2.9e-05 Score=70.50 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+++++|++|+||||++..++..+...+.+|.+++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 579999999999999999999888877889999988753
No 261
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.10 E-value=1.7e-05 Score=74.49 Aligned_cols=83 Identities=11% Similarity=-0.030 Sum_probs=46.0
Q ss_pred CCCeeEEEeeCcch--hhH--H-HHHHHHh----ccCCceEEEEeCCCCCCChhhHHHHHHhcCCCeEEecccccccccc
Q 015221 213 NPDLVIFVMDSSIG--QAA--F-DQAQAFK----QSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFE 283 (411)
Q Consensus 213 ~~d~vllVvda~~g--~~~--~-~~a~~f~----~~~~~~~vIlnK~D~~~~~g~~l~~~~~~g~Pi~fi~~Ge~i~~l~ 283 (411)
.+|.+++|+|++.. ... . .....+. ..-.+..+|.||+|+..... .+... ....-.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~--v~~~~-------------~~~~~~ 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY--IRDAH-------------TFALSK 226 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH--HHHHH-------------HHHHTS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH--HHHHH-------------HHHHhc
Confidence 37999999999764 221 1 1111111 12234688999999853311 11111 000000
Q ss_pred cCCcchhhhhhcCCCCHHHHHHHHHhhC
Q 015221 284 VFDVKPFVSRLLGMGDWSGFMDKIHEVV 311 (411)
Q Consensus 284 ~f~p~~~vs~~~g~Gdi~~L~e~i~~~~ 311 (411)
...+...+|++.|.| ++.+++.+.+.+
T Consensus 227 ~~~~~~e~SAk~g~g-v~elf~~l~~~l 253 (255)
T 3c5h_A 227 KNLQVVETSARSNVN-VDLAFSTLVQLI 253 (255)
T ss_dssp SSCCEEECBTTTTBS-HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCC-HHHHHHHHHHHh
Confidence 123445689999999 999999887653
No 262
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.08 E-value=6.5e-06 Score=72.65 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~ 137 (411)
...++++|++|+||||++..++..+. ..|..+..++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 35689999999999999999999987 67888887765
No 263
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.08 E-value=1.9e-05 Score=79.51 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+.+++++|++||||||+++.|+..+.- .+..+....+ +. ++.+. ++.. .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~-------~~----t~~~~-v~q~-~---------------- 117 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVV-------EV----TMERH-PYKH-P---------------- 117 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------------CCCE-EEEC-S----------------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCe-------ec----ceeEE-eccc-c----------------
Confidence 357999999999999999999921110 1111111100 00 01111 1110 0
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHHHHHHhccCCceEEEEeCCCCC------
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQAQAFKQSVSVGAVIVTKMDGH------ 253 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~a~~f~~~~~~~~vIlnK~D~~------ 253 (411)
....+.+.|++|.........+.+.. ......+..++ ++...+ +.....++.+...-.+..+|+||.|..
T Consensus 118 -~~~~ltv~D~~g~~~~~~~~~~~L~~-~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPt 194 (413)
T 1tq4_A 118 -NIPNVVFWDLPGIGSTNFPPDTYLEK-MKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEAD 194 (413)
T ss_dssp -SCTTEEEEECCCGGGSSCCHHHHHHH-TTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHT
T ss_pred -ccCCeeehHhhcccchHHHHHHHHHH-cCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCccc
Confidence 02367999999975322111111211 11222344444 776532 223445566554334568899998842
Q ss_pred ----CC-hhhHHHHHHhcCCCeEEeccccccccc-ccCCcchhhhh--hcCCCCHHHHHHHHHhhCCCCCc
Q 015221 254 ----AK-GGGALSAVAATKSPVIFIGTGEHMDEF-EVFDVKPFVSR--LLGMGDWSGFMDKIHEVVPMDQQ 316 (411)
Q Consensus 254 ----~~-~g~~l~~~~~~g~Pi~fi~~Ge~i~~l-~~f~p~~~vs~--~~g~Gdi~~L~e~i~~~~~~~~~ 316 (411)
.. ....+......- . +.+.+. ..+....++|. +.+.| ++.|.+.+.+.+++.+.
T Consensus 195 sgLD~~~~~~l~~~l~~l~------~--~~l~~~g~~~~~iiliSsh~l~~~~-~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 195 GEPQTFDKEKVLQDIRLNC------V--NTFRENGIAEPPIFLLSNKNVCHYD-FPVLMDKLISDLPIYKR 256 (413)
T ss_dssp TCCTTCCHHHHHHHHHHHH------H--HHHHHTTCSSCCEEECCTTCTTSTT-HHHHHHHHHHHSCGGGH
T ss_pred ccCCHHHHHHHHHHHHHHH------H--HHHHhcCCCCCcEEEEecCcCCccC-HHHHHHHHHHhCccchh
Confidence 00 011122211000 0 000000 11334455677 56667 99999999999976653
No 264
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.06 E-value=7.3e-06 Score=82.83 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=34.0
Q ss_pred eeEEEeeCcchh--hHHHHHHHHhccCCceEEEEeCCCCCCChh--hHHH----HHHhcCCCeEEecc
Q 015221 216 LVIFVMDSSIGQ--AAFDQAQAFKQSVSVGAVIVTKMDGHAKGG--GALS----AVAATKSPVIFIGT 275 (411)
Q Consensus 216 ~vllVvda~~g~--~~~~~a~~f~~~~~~~~vIlnK~D~~~~~g--~~l~----~~~~~g~Pi~fi~~ 275 (411)
.++|++|+..+. .....++.+... ....+|+||+|..+... .... .+...|+||.|++.
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~-~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSK-VNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSC-SEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhC-CCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 377788886553 234456666532 34688999999865431 1111 13346889988873
No 265
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.05 E-value=5.5e-06 Score=79.30 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.+..++++|.|||||||++|.|. |.++..++.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~------~~~~~~~~~ 150 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLA------KKNIAKTGD 150 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH------TSCCC----
T ss_pred CCceEEEEecCCCchHHHHHHHh------cCceeecCC
Confidence 45679999999999999999999 887766655
No 266
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.01 E-value=9.2e-05 Score=71.84 Aligned_cols=172 Identities=19% Similarity=0.239 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHH-HHhhh-----hcCcceeccCCCCChHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQL-KQNAT-----KAKIPFYGSYTESDPVRIAVE 174 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL-~~~~~-----~~~v~~~~~~~~~d~~~i~~~ 174 (411)
..+++++|+.||||||+++.|+... .|++++++..|.-...--.+. ..... ..++- .+....+.......
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCi--cc~~~~~~~~~l~~ 79 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCI--CCSRSNELEDALLD 79 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCE--EECTTSCHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCce--EEcccHHHHHHHHH
Confidence 4679999999999999999998653 588999998874221100000 00000 00000 00111222222211
Q ss_pred HHHHHhcC--CCCEEEEeCCCCCcchHHHHHHH---HHHHHhcCCCeeEEEeeCcchhhHHHH-HHHHhccCCceEEEEe
Q 015221 175 GVETFKKE--NCDLIIVDTSGRHKQEAALFEEM---RQVSEATNPDLVIFVMDSSIGQAAFDQ-AQAFKQSVSVGAVIVT 248 (411)
Q Consensus 175 ~l~~~~~~--~~d~viIDTaG~~~~~~~l~~el---~~i~~~~~~d~vllVvda~~g~~~~~~-a~~f~~~~~~~~vIln 248 (411)
.+...... .++++++++.|...... +...+ .........+.++-++|+....+.... .....+......+++|
T Consensus 80 l~~~~q~~~~~~~~~v~E~~~l~~p~~-~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 80 LLDNLDKGNIQFDRLVIECTGMADPGP-IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTCCHHH-HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred HHhHHhcCCCCCCEEEEeCCCCCCHHH-HHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 22111222 35999999999864332 22111 112222334567778888643222111 1111122234678889
Q ss_pred CCCCCCChhhHHHHHHh--cCCCeEEecccc
Q 015221 249 KMDGHAKGGGALSAVAA--TKSPVIFIGTGE 277 (411)
Q Consensus 249 K~D~~~~~g~~l~~~~~--~g~Pi~fi~~Ge 277 (411)
|.|...........+.. .+.+|.+++.|.
T Consensus 159 k~dl~de~~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 159 KTDVAGEAEKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp CTTTCSCTHHHHHHHHHHCSSSCEEECCSSC
T ss_pred CcccCCHHHHHHHHHHHhCCCCeEEEecccC
Confidence 99986432233333332 357788887653
No 267
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.01 E-value=3.1e-05 Score=74.69 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa 122 (411)
...|+++|++||||||+++.|+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHh
Confidence 4568999999999999999998
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.00 E-value=3.8e-05 Score=70.53 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+++++|+||+||||++.+++..+...|.+|..++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 579999999999999999999998888999999998753
No 269
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.00 E-value=9.3e-06 Score=81.32 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa 122 (411)
+..++++|+|||||||++|.|+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999999
No 270
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.99 E-value=0.00021 Score=72.72 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc------CCCCChHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS------YTESDPVRIAVE 174 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~------~~~~d~~~i~~~ 174 (411)
...+++.|+||+||||++.++|...+.+|.+|++++..--.......+. +...+++.... ....+. .....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~--~~~~~i~~~~l~~g~~~l~~~~~-~~l~~ 273 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLI--VTAGSINAQKIKAARRDFASEDW-GKLSM 273 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHH--HHHSCCCHHHHHHTGGGTCCSCH-HHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhcccCCCCHHHH-HHHHH
Confidence 3679999999999999999999999888999999999743332232222 12223321110 111121 12223
Q ss_pred HHHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 175 GVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 175 ~l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
+...+. ...+.|.|+|+.. -.++...++.+.....++..++|+|.-
T Consensus 274 a~~~l~--~~~l~i~d~~~~s--~~~i~~~ir~l~~~~~~~~~lIVID~L 319 (444)
T 3bgw_A 274 AIGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 319 (444)
T ss_dssp HHHHHH--TSCEEEECCSSCB--HHHHHHHHHHHHHHSCSSCEEEEEECS
T ss_pred HHHHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHhCCCCeEEEEecH
Confidence 333332 4577788888753 334555555555444555447888874
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.96 E-value=7.4e-06 Score=72.51 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=36.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.++++++|++||||||++.+|+.+|..+|++|+++..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 5689999999999999999999999999999999998765
No 272
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.94 E-value=7.5e-05 Score=74.09 Aligned_cols=89 Identities=20% Similarity=0.162 Sum_probs=56.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec--cCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~--~~~~~d~~~i~~~~l~~ 178 (411)
..++.|.|+||+||||++..++..+++.|.+|+.++++.... ++ ...+.+++.-. .... +..+.....++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~----~~--~a~~~g~d~~~l~i~~~-~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD----PV--YARALGVNTDELLVSQP-DNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC----HH--HHHHTTCCGGGCEEECC-SSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh----HH--HHHHcCCCHHHceeecC-CcHHHHHHHHHH
Confidence 357888999999999999999999998899999999974211 11 12222322100 0111 222333333443
Q ss_pred H-hcCCCCEEEEeCCCCCc
Q 015221 179 F-KKENCDLIIVDTSGRHK 196 (411)
Q Consensus 179 ~-~~~~~d~viIDTaG~~~ 196 (411)
+ ...++++||||+.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHTTTCCSEEEEECTTTCC
T ss_pred HHhcCCCCEEEEeChHHhc
Confidence 3 33579999999988653
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.94 E-value=0.0016 Score=66.15 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~ 139 (411)
...++++|+||+||||++..++..++. .|.+|++++...
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 467999999999999999999998876 588999999864
No 274
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.91 E-value=1.9e-05 Score=75.07 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
..++++|++|+||||+++.|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999996553
No 275
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.90 E-value=0.00015 Score=69.21 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~ 139 (411)
.+++++|+||+||||++..++..+... |.+|.+++.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 579999999999999999999998865 88898888764
No 276
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.86 E-value=5.4e-05 Score=74.81 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=56.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc-CcchHHHHHHHhhh-hcCcceeccCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNAT-KAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~-~r~~a~~qL~~~~~-~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
..++.+.|+||+||||++.+++..+++.|.+|+.++.+- +.+.. ...++. ..++.++. .+..+.....+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~~~~~l~i~~----~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQ----PDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCGGGCEEEC----CSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCCChhheeeeC----CCCHHHHHHHHHH
Confidence 367999999999999999999999999899999999852 22111 111110 11122211 1222333333333
Q ss_pred H-hcCCCCEEEEeCCCCCc
Q 015221 179 F-KKENCDLIIVDTSGRHK 196 (411)
Q Consensus 179 ~-~~~~~d~viIDTaG~~~ 196 (411)
+ ...++++|+||+.+...
T Consensus 136 l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHTCCSEEEEECGGGCC
T ss_pred HHhccCCCEEEEcCHHHhc
Confidence 3 34679999999988764
No 277
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.85 E-value=0.00017 Score=72.72 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa 122 (411)
+-...|+++|++||||||+++.|+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHh
Confidence 344568999999999999999999
No 278
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.85 E-value=0.00017 Score=70.73 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCC-CCChH--HHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT-ESDPV--RIAVEGVET 178 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~-~~d~~--~i~~~~l~~ 178 (411)
..++++|+||+||||++..+|..++..|.+|++++..--.......+.. ...+++...... .-+.. ..+..+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls--~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALS--DLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHH--HHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHH--HhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999899999999986433222222211 112222111000 11111 112223333
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
+. +.++.|.|+|+.. -.++...++.+... .+..-++|+|.
T Consensus 125 l~--~~~l~I~d~~~~s--i~~i~~~ir~l~~~-~gg~~lIVIDy 164 (338)
T 4a1f_A 125 LS--QKKLFFYDKSYVR--IEQIRLQLRKLKSQ-HKELGIAFIDY 164 (338)
T ss_dssp HH--HSCEEEECCTTCC--HHHHHHHHHHHHHH-CTTEEEEEEEE
T ss_pred Hh--cCCeEEeCCCCCc--HHHHHHHHHHHHHh-cCCCCEEEEec
Confidence 32 3467788888764 23444444444332 22567888885
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.85 E-value=2.1e-05 Score=75.33 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 68 GHNKRRIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 68 ~~~~~~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
..++ +++.+++.+.+..+++... ....+..|+++|+|||||||++..|+..+ +.....|+.|.+|
T Consensus 6 ~~s~-~~~~~~~~~~~~~~l~~~~-----~~~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~R 70 (287)
T 1gvn_B 6 NFTD-KQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK 70 (287)
T ss_dssp CCCH-HHHHHHHHHHHHHHHTTCC-----CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred CCCH-HHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHhH
Confidence 3455 5667888888888887532 23356889999999999999999998644 2256788999876
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.84 E-value=0.00014 Score=71.92 Aligned_cols=88 Identities=23% Similarity=0.217 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc-CcchHHHHHHHhhhhcCcceec--cCCCCChHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~-~r~~a~~qL~~~~~~~~v~~~~--~~~~~d~~~i~~~~l~ 177 (411)
..++.|+|+||+||||++..++..++..|.+|+.++... .++. .+.+.+++.-. .....+ .+.....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-------ra~rlgv~~~~l~i~~~~~-~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-------YAKNLGVDLKSLLISQPDH-GEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-------HHHHHTCCGGGCEEECCSS-HHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-------HHHHcCCchhhhhhhhccC-HHHHHHHHH
Confidence 368999999999999999999999998899999998753 2222 22222222100 011112 222222222
Q ss_pred HH-hcCCCCEEEEeCCCCCc
Q 015221 178 TF-KKENCDLIIVDTSGRHK 196 (411)
Q Consensus 178 ~~-~~~~~d~viIDTaG~~~ 196 (411)
.+ ....+++++||......
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCC
T ss_pred HHhhhcCCCeEEehHhhhhc
Confidence 22 34579999999877654
No 281
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.84 E-value=0.00017 Score=67.43 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcch
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAG 143 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~ 143 (411)
..+.+|+++|+|||||||++..|+..+ +..+.+++.|.+|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHh
Confidence 356889999999999999999998654 335678899988753
No 282
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.84 E-value=0.00017 Score=69.86 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc------CCCCChHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS------YTESDPVRIAVEG 175 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~------~~~~d~~~i~~~~ 175 (411)
..+.++|+||+||||++..+|...+.+|.+|+.++..--.......+.. ...+++.... .+..+. .....+
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~--~~~~i~~~~l~~~~~~l~~~~~-~~l~~a 145 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIV--TAGSINAQKIKAARRDFASEDW-GKLSMA 145 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHH--HHTTCCHHHHHSCHHHHCSSCH-HHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHH--HHcCCCHHHHhcCCCCCCHHHH-HHHHHH
Confidence 5799999999999999999999998889999999986322222222221 1223322110 111111 122233
Q ss_pred HHHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 176 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 176 l~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
...+. ...+.+.|+|+.. -.++...++.+.....++..++|+|.-
T Consensus 146 ~~~l~--~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 146 IGEIS--NSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHH--TSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHh--CCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 33332 3567788888743 334544555544433444337888874
No 283
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.82 E-value=8.6e-05 Score=73.15 Aligned_cols=89 Identities=21% Similarity=0.159 Sum_probs=55.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec--cCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~--~~~~~d~~~i~~~~l~~ 178 (411)
..++.++|+||+||||++..++..+++.|.+|+.++.+..... . .+.+.++..-. ..... ..+.....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~----~--~a~~lG~~~~~l~i~~~~-~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP----E--YAKKLGVDTDSLLVSQPD-TGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH----H--HHHHTTCCGGGCEEECCS-SHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH----H--HHHHcCCCHHHeEEecCC-CHHHHHHHHHH
Confidence 3679999999999999999999999988999999998642111 1 12223322100 00111 22222222232
Q ss_pred H-hcCCCCEEEEeCCCCCc
Q 015221 179 F-KKENCDLIIVDTSGRHK 196 (411)
Q Consensus 179 ~-~~~~~d~viIDTaG~~~ 196 (411)
+ ...++++++||.+....
T Consensus 134 l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHTTTCCSEEEEECGGGCC
T ss_pred HHhcCCCCEEEEcChHhhc
Confidence 2 34579999999988654
No 284
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.82 E-value=3.2e-05 Score=81.79 Aligned_cols=74 Identities=22% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCcc-----hHHHHHHHHHHHHh-c-CC-CeeEEEeeCcch---hhHHHHHHHHhccCCceEEEEeCCC
Q 015221 183 NCDLIIVDTSGRHKQ-----EAALFEEMRQVSEA-T-NP-DLVIFVMDSSIG---QAAFDQAQAFKQSVSVGAVIVTKMD 251 (411)
Q Consensus 183 ~~d~viIDTaG~~~~-----~~~l~~el~~i~~~-~-~~-d~vllVvda~~g---~~~~~~a~~f~~~~~~~~vIlnK~D 251 (411)
..+++++|.||.... +......+..+... . .+ ..+++++++... +.+...+..+......+.+|+||+|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 368999999986431 11222233333322 2 33 456666665432 3455666776555456789999999
Q ss_pred CCCCh
Q 015221 252 GHAKG 256 (411)
Q Consensus 252 ~~~~~ 256 (411)
...++
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 87654
No 285
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.81 E-value=6.2e-05 Score=69.54 Aligned_cols=101 Identities=13% Similarity=0.066 Sum_probs=60.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc--CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~--D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+..++++.|++|+||||++..++..+..+|.+|.++.. |. | +. .....+.++.+..... ....++. ..+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~----~~i~srlG~~~~~~~~-~~~~~i~-~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI----RNIQSRTGTSLPSVEV-ESAPEIL-NYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC----SSCCCCCCCSSCCEEE-SSTHHHH-HHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH----HHHHHhcCCCcccccc-CCHHHHH-HHHH
Confidence 34788899999999999999999999999999999943 43 2 21 1223444443221111 1112221 1111
Q ss_pred H-HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHH
Q 015221 178 T-FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210 (411)
Q Consensus 178 ~-~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~ 210 (411)
. .....+|+|+||-+-....+ ....+..+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~--~ve~l~~L~~ 114 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDR--ICEVANILAE 114 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTH--HHHHHHHHHH
T ss_pred HHhhCCCCCEEEEecCccCcHH--HHHHHHHHHh
Confidence 1 12245999999999876432 4444544443
No 286
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.78 E-value=2.1e-05 Score=82.72 Aligned_cols=29 Identities=34% Similarity=0.427 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceE
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~l 134 (411)
+..+|+++|+|||||||++|+|+ |.++++
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~------g~~~~~ 65 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLA------GKKKGF 65 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHT------TCSSCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHc------CCCCcc
Confidence 45779999999999999999999 877543
No 287
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.77 E-value=0.0021 Score=65.16 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCC-CChH--HHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE-SDPV--RIAVEGV 176 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~-~d~~--~i~~~~l 176 (411)
...+.++|+||+||||++.++|...+. .|.+|++++..--......++. +...+++....... -++. .....++
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~--~~~~~i~~~~l~~g~l~~~~~~~~~~a~ 277 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMM--CSEARIDMNRVRLGQLTDRDFSRLVDVA 277 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHH--HHHTTCCTTTCCGGGCCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHH--HHHcCCCHHHHhCCCCCHHHHHHHHHHH
Confidence 367999999999999999999998886 5889999998532221122211 22333332111100 1111 1122333
Q ss_pred HHHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeC
Q 015221 177 ETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDS 223 (411)
Q Consensus 177 ~~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda 223 (411)
..+. ...+.+.|+|+.. -.++...++.+..... .-++|+|.
T Consensus 278 ~~l~--~~~l~i~d~~~~s--~~~l~~~~~~l~~~~~--~~lIvID~ 318 (444)
T 2q6t_A 278 SRLS--EAPIYIDDTPDLT--LMEVRARARRLVSQNQ--VGLIIIDY 318 (444)
T ss_dssp HHHH--TSCEEEECCTTCB--HHHHHHHHHHHHHHSC--CCEEEEEC
T ss_pred HHHh--cCCEEEECCCCCC--HHHHHHHHHHHHHHcC--CCEEEEcC
Confidence 3332 3456777777653 2334444444443333 34677775
No 288
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.74 E-value=0.00012 Score=65.85 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec--cCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC--ADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~--~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~ 178 (411)
..+.+++|+.|+||||.+..++..+..+|++|.++. .|. |.+. .....+.++....... .++. +.++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~----~~i~s~~g~~~~a~~~-~~~~----~i~~~ 77 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK----EDVVSHMGEKEQAVAI-KNSR----EILKY 77 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC------------CEEECTTSCEEECEEE-SSST----HHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH----HHHHhhcCCceeeEee-CCHH----HHHHH
Confidence 478999999999999999999999999999999996 343 2110 1122333432211111 1111 12222
Q ss_pred HhcCCCCEEEEeCCCCCcchHHHHHHHHHHHH
Q 015221 179 FKKENCDLIIVDTSGRHKQEAALFEEMRQVSE 210 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~ 210 (411)
+. ..+|+|+||.+.+...+ ....++.+..
T Consensus 78 ~~-~~~dvViIDEaqfl~~~--~v~~l~~l~~ 106 (191)
T 1xx6_A 78 FE-EDTEVIAIDEVQFFDDE--IVEIVNKIAE 106 (191)
T ss_dssp CC-TTCSEEEECSGGGSCTH--HHHHHHHHHH
T ss_pred Hh-ccCCEEEEECCCCCCHH--HHHHHHHHHh
Confidence 22 35999999999986433 3445554443
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.71 E-value=7.2e-05 Score=67.69 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+++|+|++||||||++..|+..+...|..+..|..|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 457899999999999999999999888667778889888654
No 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.71 E-value=0.00013 Score=67.16 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~ 139 (411)
..+++++|++||||||++..++.... ..+..+.+++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 46799999999999999999996554 5677777777654
No 291
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.70 E-value=2.7e-05 Score=69.03 Aligned_cols=42 Identities=40% Similarity=0.535 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+|+++|++||||||++..|+.++...|.++.+++.|..|
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 457899999999999999999999999889999888876544
No 292
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.70 E-value=0.00016 Score=74.93 Aligned_cols=44 Identities=30% Similarity=0.454 Sum_probs=38.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
..+.+|+++|.||+||||++.+|+.+|...+.++.+++.|.+|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 34678999999999999999999999988888888999887664
No 293
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.69 E-value=0.00048 Score=69.07 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH------cCCCceEeccC-cCcc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCAD-TFRA 142 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~------~g~kv~lV~~D-~~r~ 142 (411)
.++.|+|++|+||||++..|+..... .+.++..++.. .+++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~ 226 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP 226 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH
Confidence 57999999999999999988765543 34567777764 3443
No 294
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.67 E-value=0.00013 Score=62.79 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
..++++|++|+||||++..++..+...|+++..++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 468999999999999999999988877877777766
No 295
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=9.5e-05 Score=66.58 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+|+++|++||||||++..|+..+...|.++.+.+.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 457899999999999999999999998878889888888654
No 296
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.60 E-value=2.2e-05 Score=78.58 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
...+++|+|+|||||||++|.|+ |.+++.++
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Lt------g~~~a~~~ 49 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAIT------KSVLGNPA 49 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHH------HSTTTSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHH------CCCccccc
Confidence 34679999999999999999999 65553333
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.59 E-value=0.00057 Score=61.11 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
.+.+|+|+|++||||||++..|+..+ ...+++.|.++.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~ 54 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHP 54 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcc
Confidence 35689999999999999999999665 356778887654
No 298
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.00019 Score=65.12 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
..+++++|++||||||++..|+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999997554
No 299
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=0.00013 Score=70.94 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc------CCCceEeccCc-Ccch
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCADT-FRAG 143 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~------g~kv~lV~~D~-~r~~ 143 (411)
..++.++|+||+||||++..++...+.. |.+|+.++.+. +++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~ 156 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWE 156 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence 3679999999999999999999876654 77899998864 4443
No 300
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.58 E-value=4.8e-05 Score=71.91 Aligned_cols=28 Identities=29% Similarity=0.518 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEe
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV 135 (411)
..++++|.|||||||++|.|. |.+..-+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~------~~~~~~~ 127 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK------GKRASSV 127 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH------TTCC---
T ss_pred hheEEeCCCCCCHHHHHHHHh------ccccccc
Confidence 469999999999999999999 7665433
No 301
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.58 E-value=6.4e-05 Score=66.71 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
..+++++|++||||||++++|+..+...|++|+.+..|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4679999999999999999999999888999999988653
No 302
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.58 E-value=0.00013 Score=66.90 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH------cCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~------~g~kv~lV~~D~ 139 (411)
..+++++|++|+||||++..++..... .+.++..++.+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 357999999999999999999975432 256777777653
No 303
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.53 E-value=0.00034 Score=68.57 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=54.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH------cCCCceEeccCc-CcchHHHHHHHhhhhcCcc---------eeccCC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK------KGWKPALVCADT-FRAGAFDQLKQNATKAKIP---------FYGSYT 164 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~------~g~kv~lV~~D~-~r~~a~~qL~~~~~~~~v~---------~~~~~~ 164 (411)
..++.++|+||+||||++..++...+. .|.+|+.++.+. +++. ++.....+.+++ +....+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~---~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD---RLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH---HHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH---HHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 468999999999999999999987544 477899998864 3433 333333333332 111111
Q ss_pred CCChHHHHHHHHHHHhc--CCCCEEEEeCCCCC
Q 015221 165 ESDPVRIAVEGVETFKK--ENCDLIIVDTSGRH 195 (411)
Q Consensus 165 ~~d~~~i~~~~l~~~~~--~~~d~viIDTaG~~ 195 (411)
......+.......+.. .++++++||.....
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 11122222222222333 56888888887754
No 304
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.50 E-value=0.00024 Score=74.51 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=63.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
..++++.|+||+||||+++.++..+...|++|.+++. ...|.+.+..........+.. .....+.... .....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap---T~~Aa~~L~e~~~~~a~Tih~-ll~~~~~~~~---~~~~~ 276 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP---TGKAARRLGEVTGRTASTVHR-LLGYGPQGFR---HNHLE 276 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHHHHHHTSCEEEHHH-HTTEETTEES---CSSSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC---cHHHHHHhHhhhcccHHHHHH-HHcCCcchhh---hhhcc
Confidence 3578899999999999999999999999999987765 333344443211100000000 0000000000 00000
Q ss_pred cCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCC-CeeEEEeeCc
Q 015221 181 KENCDLIIVDTSGRHKQEAALFEEMRQVSEATNP-DLVIFVMDSS 224 (411)
Q Consensus 181 ~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~-d~vllVvda~ 224 (411)
...+|++|||-++.... .++.. +...+.+ ..+++|-|..
T Consensus 277 ~~~~dvlIIDEasml~~--~~~~~---Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGD--ALMLS---LLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp CCSCSEEEECCGGGCCH--HHHHH---HHTTSCTTCEEEEEECTT
T ss_pred cccCCEEEEcCccCCCH--HHHHH---HHHhCcCCCEEEEEeccc
Confidence 12689999999998754 33333 3444433 3578888875
No 305
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.50 E-value=0.00019 Score=68.91 Aligned_cols=43 Identities=33% Similarity=0.272 Sum_probs=35.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcC--CCceEe-ccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG--WKPALV-CADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g--~kv~lV-~~D~~r 141 (411)
+++.+|+|+|++||||||++..|+..+...| .++..+ +.|.|-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 3578999999999999999999999997654 555555 888754
No 306
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.49 E-value=0.0004 Score=67.15 Aligned_cols=42 Identities=36% Similarity=0.445 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH------------HcC----CCceEeccCc-Ccc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ------------KKG----WKPALVCADT-FRA 142 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~------------~~g----~kv~lV~~D~-~r~ 142 (411)
..++.++|+||+||||++..++...+ ..| .+|+.++.+- +++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 46899999999999999999997642 234 6888888863 444
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.49 E-value=0.00094 Score=63.07 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc----------CCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK----------GWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~----------g~kv~lV~~D 138 (411)
..+++++|++|+||||++..++..+... +.+++.++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 4679999999999999999999877642 3567777664
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.48 E-value=7.8e-05 Score=65.67 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.+|+|+|++||||||++..|+..+...|+.+..++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 468999999999999999999999888888887754
No 309
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.47 E-value=0.00012 Score=66.57 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
..++|+|++|+||||++..++..+...|.++..++++.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45899999999999999999999988888888888743
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.44 E-value=9.8e-05 Score=64.99 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
+.+|+|+|++||||||++..|+..+..+|.+...++.|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 35799999999999999999999998778666666653
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.43 E-value=0.00021 Score=69.59 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=37.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHH--cCCCceEeccCcCc
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQK--KGWKPALVCADTFR 141 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~--~g~kv~lV~~D~~r 141 (411)
.+.|.+|+|+|++||||||++..|+..+.. .+.++.+++.|.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 346789999999999999999999988764 35689999999764
No 312
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.42 E-value=0.0022 Score=59.04 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEe
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV 135 (411)
++..|+|.|++||||||++..|+.++.. |.++...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4578999999999999999999999987 7766433
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.41 E-value=0.0012 Score=59.16 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++.+|+++|++||||||++..|+..+ | ...++.|.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~~ 65 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFHS 65 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccccc
Confidence 35689999999999999999999766 3 45667776543
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.40 E-value=0.00011 Score=65.87 Aligned_cols=42 Identities=33% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+|+++|++||||||++..|+..+...|.-+..++.|..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 357899999999999999999999998667665567776544
No 315
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.38 E-value=0.00054 Score=66.46 Aligned_cols=86 Identities=7% Similarity=0.040 Sum_probs=53.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHc--CCCceEeccC-cCcchHHHHHHHhhhhcCcceec--cCCCCChHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCAD-TFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVE 177 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~--g~kv~lV~~D-~~r~~a~~qL~~~~~~~~v~~~~--~~~~~d~~~i~~~~l~ 177 (411)
++.+.|+||+||||++..++..++++ |.+++.|++. .+++. .+++.+++.-. .....+..++....++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-------ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-------YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-------HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-------HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 68999999999999999999988876 7889998874 23331 23333332111 0111222222123333
Q ss_pred H---HhcCCCCEEEEeCCCCC
Q 015221 178 T---FKKENCDLIIVDTSGRH 195 (411)
Q Consensus 178 ~---~~~~~~d~viIDTaG~~ 195 (411)
. ++...+++++||.-...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 3 34567999999986654
No 316
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.38 E-value=0.00016 Score=65.14 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=33.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCC--CceEeccCcC
Q 015221 93 SFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGW--KPALVCADTF 140 (411)
Q Consensus 93 ~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~--kv~lV~~D~~ 140 (411)
++.....++.+|+++|++||||||++..|+ +. .+.+++.|.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~------~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQ------KHLPNCSVISQDDF 56 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHH------TTSTTEEEEEGGGG
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHH------HhcCCcEEEeCCcc
Confidence 344444556889999999999999999999 64 6889999875
No 317
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.35 E-value=0.00015 Score=69.95 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
..++|.|+||+||||++..++..+...+.++..++++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 34899999999999999999999988788888887743
No 318
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.35 E-value=0.0013 Score=66.02 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
..+.+|+++|+|||||||++..|+.. .....++.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS-----AGYVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG-----GTCEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh-----cCcEEEccchHH
Confidence 34688999999999999999999832 246678887763
No 319
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.0025 Score=58.23 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH-HHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH-QKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l-~~~g~kv~lV~~D~ 139 (411)
..++.++|+||+||||++..++... .+.|++|++++.+-
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 3679999999999999999998765 45588999998864
No 320
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.34 E-value=0.0015 Score=67.08 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~ 139 (411)
...+.+.|+||+||||++..+|..++.+ |.+|++++.+-
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 3678999999999999999999999876 99999999864
No 321
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.33 E-value=0.00086 Score=61.95 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHc----CCCceEe
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK----GWKPALV 135 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~----g~kv~lV 135 (411)
+...|+|.|++||||||.+..|+.+|... |++|.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 34689999999999999999999999887 9888544
No 322
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.33 E-value=0.0087 Score=56.72 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGW 130 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~ 130 (411)
+..++|+|+||+||||++..++..+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 345899999999999999999999887554
No 323
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.31 E-value=0.0001 Score=70.74 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+|+|.|++||||||++..|+..+...|.++.+++.|.|.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 356899999999999999999999888778889999999754
No 324
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.29 E-value=0.00015 Score=65.59 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~D~~r 141 (411)
+.+|+++|++||||||++..|+.++. ..|.++..++.|..|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 47899999999999999999999997 678888888876554
No 325
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.29 E-value=0.0014 Score=63.77 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.++.+.|+||+||||++..++.. .|.++..++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 56789999999999999999876 5778888887
No 326
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.27 E-value=0.00019 Score=63.01 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
+.+|+++|++||||||++..|+.++...|.++..++.|..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 46899999999999999999999987778877777765443
No 327
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.26 E-value=0.00087 Score=64.07 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.|..+++.|+||+|||+++..+|..+ |.++..+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 45678889999999999999999777 667776665
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.26 E-value=9.7e-05 Score=64.38 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
|.+|+++|+|||||||++..|+.. ......++.|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHHHH
Confidence 467999999999999999999852 2345677776654
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.25 E-value=0.0014 Score=64.53 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=49.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
..+++++|++|||||||++.|+..+... +.++..+ .|+..... . .....++-....... ....+++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~~e~~~----~--~~~~~v~q~~~~~~~---~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDPIEFVH----E--SKKCLVNQREVHRDT---LGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCC----C--CSSSEEEEEEBTTTB---SCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCcHHhhh----h--ccccceeeeeecccc---CCHHHHHHHH
Confidence 3589999999999999999999988765 5555443 34321100 0 000001111111110 1123466777
Q ss_pred hcCCCCEEEEeCCC
Q 015221 180 KKENCDLIIVDTSG 193 (411)
Q Consensus 180 ~~~~~d~viIDTaG 193 (411)
...++|++++|-|-
T Consensus 193 L~~~PdvillDEp~ 206 (356)
T 3jvv_A 193 LREDPDIILVGEMR 206 (356)
T ss_dssp TTSCCSEEEESCCC
T ss_pred hhhCcCEEecCCCC
Confidence 77899999999996
No 330
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.24 E-value=0.0056 Score=56.43 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=42.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
++-++|.|+||+||||++..++..+ +.....+++..+.. .+ ...........+..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVE----------------VI----GGLGAARVRSLFKEAR 95 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSS----------------SS----TTHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHh----------------hc----cChhHHHHHHHHHHHH
Confidence 4558999999999999999999754 44555555522110 00 0111122233344444
Q ss_pred cCCCCEEEEeCCCCC
Q 015221 181 KENCDLIIVDTSGRH 195 (411)
Q Consensus 181 ~~~~d~viIDTaG~~ 195 (411)
.....+++||-....
T Consensus 96 ~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAV 110 (262)
T ss_dssp HTCSEEEEEECC---
T ss_pred hcCCeEEEEeCcchh
Confidence 456789999987754
No 331
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.23 E-value=0.00019 Score=66.93 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHH-----cCCCceEeccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-----KGWKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~-----~g~kv~lV~~D~~r 141 (411)
+++.+|+|+|++||||||++..|+..+.- .++++.+++.|-+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 45688999999999999999999976643 25678889998643
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.21 E-value=0.00025 Score=63.85 Aligned_cols=38 Identities=37% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
++.+|+++|++||||||++..|+..+.. ++.+++.|++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 4578999999999999999999955432 4888988864
No 333
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.20 E-value=0.0051 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa 122 (411)
++.+++++|++||||||+++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34789999999999999999854
No 334
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.19 E-value=0.0042 Score=60.58 Aligned_cols=113 Identities=17% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHh
Q 015221 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQN 151 (411)
Q Consensus 73 ~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~ 151 (411)
+...+.+...+...+... .+.++.++|+|++|+||||++..++..+... +..+..+++..... ..+-+...
T Consensus 23 ~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l 94 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-FTAIIGEI 94 (389)
T ss_dssp HHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-HHHHHHHH
Confidence 334455556665554321 1112368999999999999999999888766 56677777544331 11112222
Q ss_pred hhhcCcceeccCCCCChHHHHHHHHHHHh-cCCCCEEEEeCCCCC
Q 015221 152 ATKAKIPFYGSYTESDPVRIAVEGVETFK-KENCDLIIVDTSGRH 195 (411)
Q Consensus 152 ~~~~~v~~~~~~~~~d~~~i~~~~l~~~~-~~~~d~viIDTaG~~ 195 (411)
....+.+.. ................+. ..+..++++|-+...
T Consensus 95 ~~~l~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 95 ARSLNIPFP--RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HHHTTCCCC--SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS
T ss_pred HHHhCccCC--CCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc
Confidence 222232211 111122222222222222 234779999998776
No 335
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.002 Score=62.94 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHc--------CCCceEecc
Q 015221 73 RIIQQAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKK--------GWKPALVCA 137 (411)
Q Consensus 73 ~~~~~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~--------g~kv~lV~~ 137 (411)
+..++.+.+.+...+.. +.+..++|.|++|+||||++..++..+... +..+..+++
T Consensus 26 ~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp HHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred HHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 33445555666555432 234579999999999999999999988665 666666665
No 336
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.16 E-value=0.00038 Score=62.48 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEe
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALV 135 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV 135 (411)
++.+|+|+|++||||||++..|+..+...|..+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 356899999999999999999999998888877443
No 337
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.0036 Score=57.39 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HHcCC--CceEeccCcCcchHHHHHHHhhhhcCcce----e-c-----cC--CCC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYH-QKKGW--KPALVCADTFRAGAFDQLKQNATKAKIPF----Y-G-----SY--TES 166 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l-~~~g~--kv~lV~~D~~r~~a~~qL~~~~~~~~v~~----~-~-----~~--~~~ 166 (411)
..++++|++||||||++..+.... ...+. .+.++-..|.|.-+....+......+..+ - . .. ...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 458999999999999887666543 33333 45556566667555544444333222110 0 0 00 000
Q ss_pred -----ChHHHHHHHHHHHhcCCCCEEEEeCCCCCcchHHHH-HHHHHHHHhcCCCeeEEEeeCcchhhHHHHHHHHh
Q 015221 167 -----DPVRIAVEGVETFKKENCDLIIVDTSGRHKQEAALF-EEMRQVSEATNPDLVIFVMDSSIGQAAFDQAQAFK 237 (411)
Q Consensus 167 -----d~~~i~~~~l~~~~~~~~d~viIDTaG~~~~~~~l~-~el~~i~~~~~~d~vllVvda~~g~~~~~~a~~f~ 237 (411)
.| ....+.+.. ...+++++++|.+-....+.++. ..++.+... .++.-++++.|+..... .+..|.
T Consensus 157 ~Ivv~Tp-g~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~-~~~~~~il~SAT~~~~~--~~~~~~ 228 (235)
T 3llm_A 157 SIMFCTV-GVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA-YPEVRIVLMSATIDTSM--FCEYFF 228 (235)
T ss_dssp EEEEEEH-HHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH-CTTSEEEEEECSSCCHH--HHHHTT
T ss_pred eEEEECH-HHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh-CCCCeEEEEecCCCHHH--HHHHcC
Confidence 12 222222322 24579999999998754444443 344444443 35666788888866443 444443
No 338
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.14 E-value=0.00069 Score=62.99 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
++..|+|.|++||||||.+..|+.+|...|.++.+..-.|
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 4578999999999999999999999999999855554444
No 339
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.14 E-value=0.0033 Score=55.61 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+++.|++|+||||++..++..+...+..+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 8999999999999999999888766555444433
No 340
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.11 E-value=0.0041 Score=68.01 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=31.8
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHHc-----CCCceEec
Q 015221 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKK-----GWKPALVC 136 (411)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLa~~l~~~-----g~kv~lV~ 136 (411)
.+.++|.|.. ||||||++..|+..|+++ |++|+..-
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 3568999985 999999999999999999 99998765
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.00024 Score=62.71 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+++|+|++||||||++..|+..+...|+++..|..|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 47999999999999999999999998888888777764
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.10 E-value=0.00045 Score=61.10 Aligned_cols=34 Identities=41% Similarity=0.553 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
.|++.|++||||||++..|+.++...|.++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5899999999999999999999988898875443
No 343
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.09 E-value=0.0049 Score=59.88 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc------CCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~------g~kv~lV~~D 138 (411)
+..++|.|++|+||||++..++..+... +..+..+++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4568999999999999999999988654 4555556653
No 344
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.07 E-value=0.00061 Score=69.18 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
.+..+|+++|++++|||||+|.|..++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~ 92 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMY 92 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcc
Confidence 3568899999999999999999997653
No 345
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.06 E-value=0.0018 Score=63.05 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcch-hhHHHH----HHHHhc--cCCceEEEEeCCCCCCC
Q 015221 183 NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIG-QAAFDQ----AQAFKQ--SVSVGAVIVTKMDGHAK 255 (411)
Q Consensus 183 ~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g-~~~~~~----a~~f~~--~~~~~~vIlnK~D~~~~ 255 (411)
.+.+-|.||||........+ +. -.-...++.+++|+|.+.. ...... .....+ .-.+..++.||+|+...
T Consensus 45 ~v~LqIWDTAGQErf~~~~l--~~-~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSY--DS-ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSH--HH-HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EEEEEEEECCCchhccchhh--hh-hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 47889999999754311000 00 0112367999999999754 122221 111111 11245778999998654
No 346
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.05 E-value=0.00047 Score=66.47 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=34.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHH--HcCCCceEeccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQ--KKGWKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~--~~g~kv~lV~~D~~r 141 (411)
+++.+|+|+|++||||||++..|+..+. -.+.++.+++.|-+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 3467899999999999999999998776 345578888888653
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.05 E-value=0.00061 Score=66.00 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CCceEeccCcCc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-G-WKPALVCADTFR 141 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g-~kv~lV~~D~~r 141 (411)
.++.+++|+|++||||||++..|+..+... | .++.+|..|.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 356899999999999999999999888753 4 578899888753
No 348
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.05 E-value=0.00054 Score=61.38 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceE
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPAL 134 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~l 134 (411)
++.+|+|+|++||||||++..|+.++...+..+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 35789999999999999999999999877777643
No 349
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.04 E-value=0.0018 Score=62.92 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc---CCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK---GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~---g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
+..++|+|++|+||||++..++..+... +..+..+++.... .....+.......+.+.. .......+.......
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLESLDVKVP--FTGLSIAELYRRLVK 121 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTTTSCCCC--SSSCCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHHhCCCCC--CCCCCHHHHHHHHHH
Confidence 4569999999999999999999888765 5666666653211 112222333333333211 111122222222223
Q ss_pred HHhcCC-CCEEEEeCCCC
Q 015221 178 TFKKEN-CDLIIVDTSGR 194 (411)
Q Consensus 178 ~~~~~~-~d~viIDTaG~ 194 (411)
.+...+ ..++++|-+..
T Consensus 122 ~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp HHHTCCSCEEEEEETHHH
T ss_pred HHhccCCeEEEEEcChhh
Confidence 333333 67899997654
No 350
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.04 E-value=0.00014 Score=65.44 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
+|+|+|++||||||++..|+.++...|.++.++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 689999999999999999999998888888776543
No 351
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.03 E-value=0.0013 Score=64.52 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc------CCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK------GWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~------g~kv~lV~~ 137 (411)
..++.|+|++|+||||++..++..++.. |.+|+.++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 4789999999999999999999876432 246666665
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.0005 Score=61.40 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP 132 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv 132 (411)
+.+|+|.|++||||||++..|+.++...| ++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 46899999999999999999999887666 54
No 353
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.03 E-value=0.00051 Score=61.30 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
..+++.|++|+||||++..++..+..+|.++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 568999999999999999999999888888888876
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.02 E-value=0.00058 Score=60.05 Aligned_cols=31 Identities=42% Similarity=0.665 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCce
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPA 133 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~ 133 (411)
+|+++|++||||||++..|+..+...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5899999999999999999999887777654
No 355
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.02 E-value=0.0034 Score=64.97 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
..+++++|++|+||||++..++..+...|.++..++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3579999999999999999999988877888766654
No 356
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.00 E-value=0.00055 Score=67.92 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=49.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccCcCcchHHHHHHHhhhhcCcceecc-CCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~-~~~~d~~~i~~~~l~ 177 (411)
+..+++++|++||||||+++.|+.++... ..++.++.. +... .-+..+.+... ....++. ....++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e~---------~~~~~~~~v~Q~~~g~~~~-~~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEY---------VFKHKKSIVNQREVGEDTK-SFADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCCS---------CCCCSSSEEEEEEBTTTBS-CSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHhh---------hhccCceEEEeeecCCCHH-HHHHHHH
Confidence 34689999999999999999999988765 445655543 3210 00111111110 0000111 1134555
Q ss_pred HHhcCCCCEEEEeCCC
Q 015221 178 TFKKENCDLIIVDTSG 193 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG 193 (411)
.+...+.|++++|-|.
T Consensus 204 ~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 204 AALREDPDVIFVGEMR 219 (372)
T ss_dssp HHTTSCCSEEEESCCC
T ss_pred HHhhhCcCEEEECCCC
Confidence 5555689999999997
No 357
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.00 E-value=0.0041 Score=62.93 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcc
Q 015221 79 IFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (411)
Q Consensus 79 v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~ 158 (411)
+.+.|...+.... ......++.++.|+||+||||++.+++. ..++++++. +..+.+.++......+.+
T Consensus 143 ~l~~l~~~~~~~~----~~~~~~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTp---T~~aa~~l~~kl~~~~~~ 210 (446)
T 3vkw_A 143 KLRTLRRLLKDGE----PHVSSAKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVP---GRQAAEMIRRRANASGII 210 (446)
T ss_dssp HHHHHHTTCBTTB----CCCCCSEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEES---CHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHhhhc----cccccccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeC---CHHHHHHHHHHhhhcCcc
Confidence 3355556554211 2223457889999999999999999872 256677776 555566665544322221
Q ss_pred eeccCCCCChHHHHHHHHHHHhcC---CCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 159 FYGSYTESDPVRIAVEGVETFKKE---NCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 159 ~~~~~~~~d~~~i~~~~l~~~~~~---~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
. .. ...+......+...... .+|++|||-++..+.. ++. .+.....+..++++-|..
T Consensus 211 ~---~~-~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~~--~l~---~l~~~~~~~~vilvGD~~ 270 (446)
T 3vkw_A 211 V---AT-KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTG--CVN---FLVEMSLCDIAYVYGDTQ 270 (446)
T ss_dssp C---CC-TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCHH--HHH---HHHHHTTCSEEEEEECTT
T ss_pred c---cc-cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCHH--HHH---HHHHhCCCCEEEEecCcc
Confidence 0 00 00011111122111111 2899999999977542 222 233445668889999975
No 358
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.98 E-value=0.00083 Score=58.43 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
++.+|+++|++||||||++..|+..+ | ...++.|..+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~~ 44 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLHP 44 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGCC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccccc
Confidence 34789999999999999999998654 3 45677776553
No 359
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=96.98 E-value=0.011 Score=57.84 Aligned_cols=155 Identities=15% Similarity=0.246 Sum_probs=92.0
Q ss_pred CeEEEEEcCC-CCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQ-GSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~-GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.+.++++|-- .+||||++..|...++++|.++..+.+ +..-.+. ...+++.- .-..+.+..+++.+
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~t-----gqtg~~~---~~~gi~~D-----av~~df~aG~ve~~ 218 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLAT-----GQTGVML---EGDGVALD-----AVRVDFAAGAVEQM 218 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECC-----SHHHHHH---HSCSCCGG-----GSBHHHHHHHHHHH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEec-----cchhhhh---hcCCcchh-----HHHHHHHhhhHHHH
Confidence 5779999977 999999999999999999999998765 1110111 12233211 11122222222322
Q ss_pred ---hcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCcchh-------------hHHHHHHHHh------
Q 015221 180 ---KKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSSIGQ-------------AAFDQAQAFK------ 237 (411)
Q Consensus 180 ---~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~-------------~~~~~a~~f~------ 237 (411)
..+++|+++|.-+|-......- ....+....+|+.+++|.++..+. ........+.
T Consensus 219 ~~~~~~~~d~vlVEGqGgl~~P~~~--~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~ 296 (349)
T 2obn_A 219 VMRYGKNYDILHIEGQGSLLHPGST--ATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAF 296 (349)
T ss_dssp HHHHTTTCSEEEECCCCCTTSTTCC--THHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTS
T ss_pred HHHhccCCCEEEEeCCCcccCcChH--hHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccC
Confidence 2347999999998853211110 112455666899999999986431 2233333332
Q ss_pred ccCCceEEEEeCCCCCCCh-hhH-HHHHHhcCCCe
Q 015221 238 QSVSVGAVIVTKMDGHAKG-GGA-LSAVAATKSPV 270 (411)
Q Consensus 238 ~~~~~~~vIlnK~D~~~~~-g~~-l~~~~~~g~Pi 270 (411)
...++.|+++|..+..... ... ..+...+|+|+
T Consensus 297 ~~~~V~Gi~lN~~~~~~~~~~~~~~~ie~~~glPv 331 (349)
T 2obn_A 297 GTVPVVGIALNTAHLDEYAAKEAIAHTIAETGLPC 331 (349)
T ss_dssp CCCCEEEEEEECTTSCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHCCCE
Confidence 3467889999998765332 112 22345577776
No 360
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.96 E-value=0.0028 Score=74.65 Aligned_cols=90 Identities=21% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc-CcchHHHHHHHhhhhcCcceec-cCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT-FRAGAFDQLKQNATKAKIPFYG-SYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~-~r~~a~~qL~~~~~~~~v~~~~-~~~~~d~~~i~~~~l~ 177 (411)
++..+.++||||+||||++.+++....++|.+++.++++- +.+- . +...++++-. .....++.+.+...+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l-----~--a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----Y--ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH-----H--HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHH-----H--HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3578999999999999999999999999999999999852 1221 1 2222322100 0012334443333333
Q ss_pred -HHhcCCCCEEEEeCC-CCCc
Q 015221 178 -TFKKENCDLIIVDTS-GRHK 196 (411)
Q Consensus 178 -~~~~~~~d~viIDTa-G~~~ 196 (411)
.++...+++++||.- +..+
T Consensus 1499 ~lvr~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCC
T ss_pred HHHhcCCCCEEEEcChhHhcc
Confidence 234568999999996 4544
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.96 E-value=0.00065 Score=62.38 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
.++++|.++|+|||||||.+..|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999654
No 362
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.018 Score=55.70 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 015221 77 QAIFNELCKMLDPGKPSFTPKKGKPSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (411)
Q Consensus 77 ~~v~~~L~~ll~~~~~~~~~~~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~ 127 (411)
..++..|...+.. +++..+.+.|+||+|||+++..++..+..
T Consensus 30 ~~i~~~L~~~i~~---------~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 30 TRIFLPIYDSLMS---------SQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHT---------TCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5556666666642 23456899999999999999999999975
No 363
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.95 E-value=0.015 Score=52.37 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=32.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.|.+.+.+|.||||.+..+|.....+|++|.++....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 4677777889999999999999999999999997754
No 364
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.013 Score=58.91 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=42.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
|+-|++.||||+|||+++.++|..+ |.....++... +.. ....+.....+.....++
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~-------------------l~s-k~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSE-------------------LIQ-KYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGG-------------------GCC-SSSSHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHH-------------------hhh-ccCchHHHHHHHHHHHHH
Confidence 4569999999999999999999554 33444444310 001 111123344555566666
Q ss_pred cCCCCEEEEeC
Q 015221 181 KENCDLIIVDT 191 (411)
Q Consensus 181 ~~~~d~viIDT 191 (411)
.....+++||-
T Consensus 273 ~~aP~IIfiDE 283 (437)
T 4b4t_I 273 ENAPSIVFIDE 283 (437)
T ss_dssp HTCSEEEEEEE
T ss_pred hcCCcEEEEeh
Confidence 66777888873
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.95 E-value=0.00056 Score=60.23 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
.+.+|+++|++||||||++..|+..+ |. .+++.|.+|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l---~~--~~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL---RL--PLLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---TC--CEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC--eEecHHHHH
Confidence 35789999999999999999999766 33 356666554
No 366
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00069 Score=60.36 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.+++++|++|+||||++..++..+..+|+++.++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 578899999999999999999999888999988754
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00072 Score=60.14 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
+.+|+|+|++||||||++..|+.++ .|.++..++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 4679999999999999999999766 355555444
No 368
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.023 Score=56.72 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
|+-+++.||||+|||+++.++|..+ |.....|+... +.. ....+....++.....++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~-------------------l~s-k~vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAE-------------------LVQ-KYIGEGSRMVRELFVMAR 238 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGG-------------------GSC-SSTTHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHH-------------------hhc-cccchHHHHHHHHHHHHH
Confidence 4459999999999999999999543 33444444310 000 111123344556666676
Q ss_pred cCCCCEEEEeC
Q 015221 181 KENCDLIIVDT 191 (411)
Q Consensus 181 ~~~~d~viIDT 191 (411)
.....+++||-
T Consensus 239 ~~aP~IIFiDE 249 (405)
T 4b4t_J 239 EHAPSIIFMDE 249 (405)
T ss_dssp HTCSEEEEEES
T ss_pred HhCCceEeeec
Confidence 67788899885
No 369
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.91 E-value=0.0034 Score=57.38 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+..+.+++|+.|+||||.+..++..+..+|++|.++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34788899999999999999999999999999999964
No 370
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.89 E-value=0.00057 Score=61.23 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+|+++|++||||||++..|+ +....+++.|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La------~lg~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT------DLGVPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH------TTTCCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH------HCCCcccchHH
Confidence 579999999999999999998 44455677764
No 371
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.88 E-value=0.0043 Score=56.16 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
+.|+|=|..||||||.+..|+.+|. +|++|....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 5788999999999999999999996 487776554
No 372
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.88 E-value=0.00061 Score=58.73 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
.+|+++|++||||||++..|+..+ | ...++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---K--YPIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---C--CCEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CeeecCcccc
Confidence 468999999999999999998554 2 4567887654
No 373
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.87 E-value=0.00048 Score=61.05 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
.+++|+||+||||||++..|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999997664
No 374
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.87 E-value=0.00071 Score=59.46 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
+.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---G--YTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHH
Confidence 5789999999999999999998654 3 3456665
No 375
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.84 E-value=0.0032 Score=63.96 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCC-CceEecc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGW-KPALVCA 137 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~-kv~lV~~ 137 (411)
.+++.|++|+||||++..++.++...|. ++++++.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 5889999999999999999999998887 5555544
No 376
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.0039 Score=72.49 Aligned_cols=90 Identities=22% Similarity=0.258 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceecc-CCCCChHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGS-YTESDPVRIAVEGVETF 179 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~-~~~~d~~~i~~~~l~~~ 179 (411)
...+.+.|+||+||||++.++|..++++|.+|+.++..--. +|+. +.+.+++.-.. ....++.+.....++.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~----~ql~--A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPIY--ARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CHHH--HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH----HHHH--HHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 46799999999999999999999999999999999985322 1222 33444331110 00112333333333332
Q ss_pred -hcCCCCEEEEeCCCCCc
Q 015221 180 -KKENCDLIIVDTSGRHK 196 (411)
Q Consensus 180 -~~~~~d~viIDTaG~~~ 196 (411)
...++++++||.-....
T Consensus 806 v~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHTCCSEEEESCSTTCC
T ss_pred HHccCCCEEEEechhhhc
Confidence 34689999999977654
No 377
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.83 E-value=0.0066 Score=56.93 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+.-++|.|+||+||||++..++..+ +..+..+++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 3459999999999999999998654 444444443
No 378
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.83 E-value=0.00091 Score=61.96 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCCceEeccCcC
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKK-----GWKPALVCADTF 140 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~-----g~kv~lV~~D~~ 140 (411)
.++.+|+|+|++||||||++..|+..+... ..++.+++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~ 69 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF 69 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence 345789999999999999999999766221 235667777653
No 379
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00059 Score=60.15 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++|+|++||||||+++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999654
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.82 E-value=0.00059 Score=60.59 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.++.+|+|+|++||||||++..|+.. ...+++.|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 35688999999999999999999842 4567787753
No 381
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.82 E-value=0.00084 Score=59.90 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
..++.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 4467889999999999999999998543 3 4566665
No 382
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.82 E-value=0.0012 Score=60.35 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
+..|+|.|++||||||.+..|+.+|...|++|....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 478999999999999999999999999999885443
No 383
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.81 E-value=0.0047 Score=59.74 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=43.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
++-++|.|+||+|||+++..+|..+ .+.....+++... .... ........+..+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l-------------------~~~~-~g~~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDL-------------------VSKW-LGESEKLVKNLFQLAR 102 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSS-------------------CCSS-CCSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHH-------------------Hhhh-hhHHHHHHHHHHHHHH
Confidence 4669999999999999999999765 2334444444111 0000 0112233444445555
Q ss_pred cCCCCEEEEeCCCC
Q 015221 181 KENCDLIIVDTSGR 194 (411)
Q Consensus 181 ~~~~d~viIDTaG~ 194 (411)
.....+++||-...
T Consensus 103 ~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 103 ENKPSIIFIDEIDS 116 (322)
T ss_dssp HTSSEEEEEETTTG
T ss_pred hcCCcEEEeecHHH
Confidence 56778999996543
No 384
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.00051 Score=60.76 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
++..|+++|++||||||++..|+..+ .....+++|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l----~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAEL----DGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS----TTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----CCCEEeeHH
Confidence 35679999999999999999999531 134566665
No 385
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.79 E-value=0.00082 Score=59.30 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
+.+|+|+|++||||||++..|+.++ | ...++.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY---G--YTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 4679999999999999999999665 3 3355554
No 386
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00065 Score=59.16 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
+.+|.++|++||||||++..|+..+ +.....++.|.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 3579999999999999999999554 333344456643
No 387
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.79 E-value=0.00076 Score=59.42 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYA 122 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa 122 (411)
+.+++++|++||||||++..|+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 388
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.79 E-value=0.002 Score=59.30 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcC
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTF 140 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~ 140 (411)
.++..|+|.|++||||||.+..|+.+|.. .|++|.+++-.|.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 35688999999999999999999999998 8998887454443
No 389
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00088 Score=59.91 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
++.+|+++|++||||||++..|+..+ | ...++.|.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l---~--~~~i~~d~ 58 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL---N--VPFIDLDW 58 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcchH
Confidence 34679999999999999999999766 3 33556654
No 390
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.77 E-value=0.0022 Score=68.03 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=38.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHh
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQN 151 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~ 151 (411)
+.+|.||||+||||++..+..++.++|.+|++++. ...|++.+...
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i~er 252 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNLVER 252 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHHHHH
Confidence 46777999999999999999999999999988876 66666665443
No 391
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.76 E-value=0.003 Score=63.98 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc--CCCceEeccC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK--GWKPALVCAD 138 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~--g~kv~lV~~D 138 (411)
+-++|.|++|+||||++..++..+... +.++..+++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 348999999999999999999988765 7777777763
No 392
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.76 E-value=0.0035 Score=66.10 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH----cCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK----KGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~----~g~kv~lV~~ 137 (411)
+.+++.|+||+||||+++.+...+.+ .+.++.+++.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 57889999999999999999998874 3456665554
No 393
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0035 Score=63.26 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
|+-+++.||||+|||+++.++|..+ |.....|++... .. .........++..+..++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l-------------------~~-~~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEF-------------------VH-KYLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGT-------------------CC-SSCSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchh-------------------hc-cccchhHHHHHHHHHHHH
Confidence 4559999999999999999999654 444444444110 00 011122334455556666
Q ss_pred cCCCCEEEEeC
Q 015221 181 KENCDLIIVDT 191 (411)
Q Consensus 181 ~~~~d~viIDT 191 (411)
.....++++|-
T Consensus 263 ~~aP~IifiDE 273 (428)
T 4b4t_K 263 ENAPSIIFIDE 273 (428)
T ss_dssp HTCSEEEEEEC
T ss_pred HcCCCeeechh
Confidence 66677888875
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.74 E-value=0.0011 Score=59.26 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
..+.+|+|+|+|||||||++..|+.++ |. .+++.|
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~--~~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL---GI--PQISTG 52 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 346789999999999999999999765 33 356654
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.74 E-value=0.00096 Score=60.52 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
++..|+|+|++||||||++..|+.++ | ...++.|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 36 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF---H--AAHLATG 36 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEehh
Confidence 35679999999999999999999765 3 3456653
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00091 Score=58.64 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
+.+|+++|++||||||++..|+..+ | ...++.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CeEecHH
Confidence 4679999999999999999999655 3 3456654
No 397
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.72 E-value=0.00098 Score=61.65 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
+.+|+|+|++||||||++..|+..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999665
No 398
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.71 E-value=0.0007 Score=60.83 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
++.+|+|+|++||||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999999665
No 399
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.71 E-value=0.00075 Score=58.46 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+|+++|++||||||++..|+..+ ....++.|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d~ 37 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQ 37 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEeccH
Confidence 469999999999999999999433 345666653
No 400
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.70 E-value=0.00085 Score=60.23 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
.+++|+||+||||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4699999999999999999996653
No 401
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.70 E-value=0.0029 Score=57.71 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
+..|+|.|++||||||.+..|+.+|...|.+..++.-.|
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep 41 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP 41 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 357999999999999999999999999998333444434
No 402
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.69 E-value=0.0016 Score=61.29 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHc-CCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKK-GWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~-g~kv~lV~~D 138 (411)
..+++++|++||||||+++.|+..+... ..++.+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 3679999999999999999999988754 4456555443
No 403
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.68 E-value=0.0011 Score=58.15 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
++.|+++|++||||||++..|+..+ | ..+++.|.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~--~~~i~~d~~ 39 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---K--RILYDSDKE 39 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---C--CCEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CCEEEChHH
Confidence 4578999999999999999999655 3 446676654
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.68 E-value=0.0014 Score=57.48 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
.+.+|+|+|++||||||++..|+..+ | ...++.|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 35789999999999999999998654 3 4566664
No 405
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.68 E-value=0.0011 Score=59.94 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYY 124 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~ 124 (411)
++.+|+|+||+||||||++..|+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999844
No 406
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.67 E-value=0.001 Score=59.13 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++++|++||||||++..|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3679999999999999999999553
No 407
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.66 E-value=0.0014 Score=62.25 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
...++|+|+||+||||++..++..+...+..+..+++..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 35699999999999999999999887766677777775544
No 408
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.66 E-value=0.00078 Score=60.17 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+|+++|++||||||++..|+. ..+.++++|.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~------~g~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE------LGAYVLDADK 33 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH------TTCEEEEHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH------CCCEEEEccH
Confidence 3699999999999999999994 3466777764
No 409
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.66 E-value=0.00099 Score=57.12 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKY 121 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kL 121 (411)
.+|+++|++||||||++..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 410
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.66 E-value=0.0016 Score=56.27 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~ 127 (411)
..++++|++|+||||++..++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45889999999999999999998876
No 411
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=58.62 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
+.+|+++|++||||||++..|+.++ | ...++.|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4679999999999999999999665 2 45666653
No 412
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0021 Score=64.92 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.|+-|++.||||+|||+++.++|..+ |.....+++... .. ..........+.....+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l-------------------~~-~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQL-------------------VQ-MYIGEGAKLVRDAFALA 270 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------CS-SCSSHHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhh-------------------hh-cccchHHHHHHHHHHHH
Confidence 35669999999999999999999554 444444444110 00 11112233445555556
Q ss_pred hcCCCCEEEEeC
Q 015221 180 KKENCDLIIVDT 191 (411)
Q Consensus 180 ~~~~~d~viIDT 191 (411)
......+++||-
T Consensus 271 ~~~aP~IifiDE 282 (434)
T 4b4t_M 271 KEKAPTIIFIDE 282 (434)
T ss_dssp HHHCSEEEEEEC
T ss_pred HhcCCeEEeecc
Confidence 566778889885
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.64 E-value=0.0021 Score=62.16 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
+++|+|+||+||||||++..||.. ...-+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR-----LNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT-----TTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh-----CccceeecCc
Confidence 467999999999999999999943 3467899985
No 414
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.63 E-value=0.0046 Score=58.47 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
+..++|.|+||+||||++..++..+ +....-+++.... . ..........+..+..+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~-------------------~-~~~~~~~~~~~~~~~~~~ 110 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLT-------------------S-KYVGDGEKLVRALFAVAR 110 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTS-------------------S-SSCSCHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHh-------------------h-cccchHHHHHHHHHHHHH
Confidence 4569999999999999999998654 3333334431110 0 001112233334444455
Q ss_pred cCCCCEEEEeCCCC
Q 015221 181 KENCDLIIVDTSGR 194 (411)
Q Consensus 181 ~~~~d~viIDTaG~ 194 (411)
.....++++|-+..
T Consensus 111 ~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 111 HMQPSIIFIDEVDS 124 (297)
T ss_dssp HTCSEEEEEETGGG
T ss_pred HcCCcEEEeccHHH
Confidence 55678999997754
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.63 E-value=0.0011 Score=59.91 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
+.+|+|+|++||||||++..|+. ....++++|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~------lg~~~id~D~ 36 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD------LGINVIDADI 36 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH------TTCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH------cCCEEEEccH
Confidence 57899999999999999999983 3456777764
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.63 E-value=0.0068 Score=71.43 Aligned_cols=88 Identities=22% Similarity=0.232 Sum_probs=55.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceec--cCCCCChHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYG--SYTESDPVRIAVEGVET 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~--~~~~~d~~~i~~~~l~~ 178 (411)
..++.+.|+||+||||++.+++...++.|.+|+.++..--.. ++. +.+.+++.-. .... +..+.+...++.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~----~~~--a~~lGvd~~~L~I~~~-~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PIY--ARKLGVDIDNLLCSQP-DTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC----HHH--HHHTTCCTTTCEEECC-SSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH----HHH--HHHcCCCHHHeEEeCC-CCHHHHHHHHHH
Confidence 468999999999999999999999998899999999853221 111 2333332100 0111 223323333333
Q ss_pred H-hcCCCCEEEEeCCCCC
Q 015221 179 F-KKENCDLIIVDTSGRH 195 (411)
Q Consensus 179 ~-~~~~~d~viIDTaG~~ 195 (411)
+ ...++++|+||.-...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 2 3467999999985543
No 417
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.61 E-value=0.0014 Score=69.15 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
++.+|.|+|.+||||||++..|+.+|..+|..+..++.|..|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 467899999999999999999999998889888888776554
No 418
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.61 E-value=0.0017 Score=60.68 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+|+++|++||||||++..||..+ | ..+++.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccHH
Confidence 468999999999999999999654 2 457777764
No 419
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.60 E-value=0.0047 Score=56.53 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=63.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc--CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~--D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
...+.+++|+-|+||||.+...+..+..+|+++.++.. |.. .+ ......+.++....... .++.++. .
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R-~~----~~~I~Sr~G~~~~a~~v-~~~~di~----~ 96 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR-YH----KEKVVSHNGNAIEAINI-SKASEIM----T 96 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------CBTTBCCEEEEE-SSGGGGG----G
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc-ch----hhhHHHhcCCceeeEEe-CCHHHHH----H
Confidence 35788999999999999888888888888999999865 421 11 11223444443222111 1111110 1
Q ss_pred HHhcCCCCEEEEeCCCCCcchHHHHHHHHHHHHhcCCCeeEEEeeCc
Q 015221 178 TFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATNPDLVIFVMDSS 224 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~~~~~l~~el~~i~~~~~~d~vllVvda~ 224 (411)
. ...++|+|+||-+-+... ++...+..+.. ..-..++.=+|..
T Consensus 97 ~-i~~~~dvV~IDEaQFf~~--~~v~~l~~la~-~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 97 H-DLTNVDVIGIDEVQFFDD--EIVSIVEKLSA-DGHRVIVAGLDMD 139 (219)
T ss_dssp S-CCTTCSEEEECCGGGSCT--HHHHHHHHHHH-TTCEEEEEEESBC
T ss_pred H-HhcCCCEEEEechhcCCH--HHHHHHHHHHH-CCCEEEEeecccc
Confidence 1 124799999999998754 34455555552 3334455555553
No 420
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.59 E-value=0.0012 Score=60.05 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
++..|+|+|++||||||++..|+.++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999765
No 421
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.59 E-value=0.0013 Score=58.16 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
.++++|++||||||++..|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999997763
No 422
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0052 Score=59.57 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcC
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKG 129 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g 129 (411)
++|.|++|+||||++..++..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999998876443
No 423
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.56 E-value=0.016 Score=51.60 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKK 128 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~ 128 (411)
..++|.|++|+||||++..++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 468999999999999999999877643
No 424
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.56 E-value=0.0021 Score=61.94 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-HcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQ-KKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~-~~g~kv~lV~~ 137 (411)
..+.|.|+||+|||+++..++..+. .+|++|..+++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 4588999999999999999999999 88999888876
No 425
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.039 Score=56.02 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
.|+-|+|.||||+|||+++.++|..+ |.....+++... .. ..........+.....+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L-------------------~s-k~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSEL-------------------VQ-KYVGEGARMVRELFEMA 298 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGG-------------------CC-CSSSHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHh-------------------hc-ccCCHHHHHHHHHHHHH
Confidence 45669999999999999999999554 334444443100 00 11112234455556666
Q ss_pred hcCCCCEEEEeC
Q 015221 180 KKENCDLIIVDT 191 (411)
Q Consensus 180 ~~~~~d~viIDT 191 (411)
+.....++|+|-
T Consensus 299 r~~aP~IIfiDE 310 (467)
T 4b4t_H 299 RTKKACIIFFDE 310 (467)
T ss_dssp HHTCSEEEEEEC
T ss_pred HhcCCceEeecc
Confidence 666778888885
No 426
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.55 E-value=0.0014 Score=57.96 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
+|+|+|++||||||++..|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999997663
No 427
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.011 Score=57.07 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
++|+|++|+||||++..++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998653
No 428
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.54 E-value=0.0015 Score=59.20 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
.+|+|+|++||||||++..|+..+ ....++.|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g 37 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSG 37 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCc
Confidence 579999999999999999999443 24455654
No 429
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.54 E-value=0.0014 Score=58.27 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
+.+|+|+|++||||||++..|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999654
No 430
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.53 E-value=0.014 Score=55.81 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++.+++.|+||+||||++..++..+ +.++.-+++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~ 81 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNG 81 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4567788889999999999998655 445555554
No 431
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0089 Score=55.29 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++-++++|+||+||||++..++..+ +.....+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 3448999999999999999999654 334444443
No 432
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0051 Score=62.21 Aligned_cols=69 Identities=22% Similarity=0.189 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETF 179 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~ 179 (411)
+|+-|++.||||+|||+++.++|..+ |.....+++... .. ..........+.....+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l-------------------~s-k~~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGI-------------------VD-KYIGESARIIREMFAYA 270 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGT-------------------CC-SSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhh-------------------cc-ccchHHHHHHHHHHHHH
Confidence 35669999999999999999999654 444554544110 00 01112233445555666
Q ss_pred hcCCCCEEEEeC
Q 015221 180 KKENCDLIIVDT 191 (411)
Q Consensus 180 ~~~~~d~viIDT 191 (411)
......++|||-
T Consensus 271 ~~~~P~IifiDE 282 (437)
T 4b4t_L 271 KEHEPCIIFMDE 282 (437)
T ss_dssp HHSCSEEEEEEC
T ss_pred HhcCCceeeeec
Confidence 666778888875
No 433
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.53 E-value=0.0016 Score=63.79 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+|+|+|++||||||++..|+..+ .+.+++.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 579999999999999999999654 3688999975
No 434
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.52 E-value=0.0011 Score=62.98 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 98 KGKPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 98 ~~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+++.+|+|+|++||||||++..|+. .| ..++++|.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~----lg--~~~id~D~~ 108 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN----LG--AYIIDSDHL 108 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH----HT--CEEEEHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH----CC--CcEEehhHH
Confidence 45678999999999999999999983 24 456787753
No 435
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.51 E-value=0.0035 Score=58.67 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC 136 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~ 136 (411)
.+..++|.|+||+||||++..++..+ +.....++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 34669999999999999999999763 44444443
No 436
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0019 Score=59.87 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++.+|+|+|+|||||||++..|+..+ ....+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEec
Confidence 46789999999999999999999654 3445555
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.50 E-value=0.00089 Score=58.47 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
++.+|+|+|++||||||++..|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998544
No 438
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.0014 Score=57.39 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+|+|+|+|||||||++..|+..+ | ..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL---G--VGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---C--CCEEeCchH
Confidence 359999999999999999999654 3 446777654
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.48 E-value=0.0028 Score=61.23 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+++|+++||+||||||++..||.. ...-+|++|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~-----~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI-----LPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH-----SCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-----CCCcEEeccc
Confidence 3578999999999999999999954 3456888885
No 440
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.48 E-value=0.0016 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
+..|+++|++||||||++..|+..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999655
No 441
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.46 E-value=0.0013 Score=59.91 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
++..|+|+|++||||||++..|+..+ | ...++.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 39 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSG 39 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc---C--CeEEech
Confidence 35679999999999999999999543 3 4456653
No 442
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.46 E-value=0.0016 Score=58.75 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
++..|+|+||+||||||+++.|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999998543
No 443
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.44 E-value=0.0017 Score=68.07 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHHHHcC-CCceEeccCcCcc
Q 015221 99 GKPSVIMFVGLQGSGKTTTCTKYAYYHQKKG-WKPALVCADTFRA 142 (411)
Q Consensus 99 ~~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g-~kv~lV~~D~~r~ 142 (411)
.++.+|.|+|++||||||++..|+..|..+| +++..++.|..|.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 3467899999999999999999999998878 8888888876543
No 444
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.43 E-value=0.0014 Score=59.79 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++|+|++||||||+++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4569999999999999999999655
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.42 E-value=0.0018 Score=55.92 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+|+|+|++||||||++..|+..+ | ..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g--~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---G--YEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---C--CcEEcccHH
Confidence 469999999999999999999655 3 346676643
No 446
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.42 E-value=0.0028 Score=61.88 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
++++|+|+||+||||||++..||. ....-+|++|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~-----~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA-----HFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT-----TSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHH-----HCCCcEEccccc
Confidence 346899999999999999999992 235678999963
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.40 E-value=0.002 Score=58.53 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEec-cCcCcc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVC-ADTFRA 142 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~-~D~~r~ 142 (411)
+|+|+|+|||||+|.+.+|+..+ | ..-++ .|.+|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g--~~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---G--FVHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---C--CeEEcHHHHHHH
Confidence 58899999999999999999654 2 33343 455653
No 448
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.39 E-value=0.0072 Score=58.21 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHh
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFK 180 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~ 180 (411)
++-++|.|+||+|||+++..+|..+ +.....+++.. + .. ................+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~--------l---~~---------~~~g~~~~~~~~~f~~a~ 107 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD--------L---VS---------KWMGESEKLVKQLFAMAR 107 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH--------H---HT---------TTGGGHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH--------H---hh---------cccchHHHHHHHHHHHHH
Confidence 4569999999999999999998654 44444444410 0 00 000112223334445555
Q ss_pred cCCCCEEEEeCCCC
Q 015221 181 KENCDLIIVDTSGR 194 (411)
Q Consensus 181 ~~~~d~viIDTaG~ 194 (411)
.....+++||-...
T Consensus 108 ~~~~~vl~iDEid~ 121 (322)
T 3eie_A 108 ENKPSIIFIDQVDA 121 (322)
T ss_dssp HTSSEEEEEECGGG
T ss_pred hcCCeEEEechhhh
Confidence 55678999997654
No 449
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.38 E-value=0.0018 Score=58.31 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++|+|++||||||+++.|+..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3679999999999999999999654
No 450
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.37 E-value=0.0019 Score=56.23 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
+|+|+|++||||||++..|+..+ | ...++.|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 58999999999999999999654 2 45666654
No 451
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.36 E-value=0.0063 Score=70.82 Aligned_cols=89 Identities=22% Similarity=0.230 Sum_probs=57.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccC-CCCChHHHHHHHHHH-
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSY-TESDPVRIAVEGVET- 178 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~-~~~d~~~i~~~~l~~- 178 (411)
.++|-+.||+|+||||++.+.++..+++|..++.+++.-.. + ..++...|+++-... ...+..+.+...++.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~----~--~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~ 1504 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----D--PIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1504 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----C--HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCC----C--HHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHH
Confidence 36899999999999999999999999999999999984211 1 112444454432211 122222333333333
Q ss_pred HhcCCCCEEEEeCCCCC
Q 015221 179 FKKENCDLIIVDTSGRH 195 (411)
Q Consensus 179 ~~~~~~d~viIDTaG~~ 195 (411)
++...+|+|+||....+
T Consensus 1505 ~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1505 ARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHcCCCCEEEEccHHhC
Confidence 34567999999985543
No 452
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.36 E-value=0.0022 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~ 127 (411)
..++|+|++|+||||++..++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44789999999999999999988866
No 453
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.36 E-value=0.0018 Score=58.76 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
+..|+|+|+|||||||++..|+.++ | ...++.|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY---G--LAHLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---C--ceEEehh
Confidence 4579999999999999999999766 3 3455554
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.35 E-value=0.0033 Score=61.06 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
++.|+++|++||||||++..||..+ ...+++.|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence 3579999999999999999999432 467888885
No 455
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.35 E-value=0.0014 Score=58.79 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
...+|+++|.+||||||++..|+..+ ...++++|.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHH
Confidence 35789999999999999999999543 3677888864
No 456
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.35 E-value=0.018 Score=53.21 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=51.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc--CcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA--DTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVE 177 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~--D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~ 177 (411)
...+.+++|+-|+||||.+..++..+..+|++|.++.. |. |.+ . .+ ..+.|+........ +..+ .++
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg-~-~i---~sr~G~~~~a~~i~-~~~d----i~~ 86 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS-S-SF---CTHDRNTMEALPAC-LLRD----VAQ 86 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEES-SGGG----GHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch-H-HH---HhhcCCeeEEEecC-CHHH----HHH
Confidence 35788889999999999999999999999999999874 43 333 1 11 11223222111111 1111 112
Q ss_pred HHhcCCCCEEEEeCCCCCc
Q 015221 178 TFKKENCDLIIVDTSGRHK 196 (411)
Q Consensus 178 ~~~~~~~d~viIDTaG~~~ 196 (411)
.+ ..+|+|+||-+-+..
T Consensus 87 ~~--~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 87 EA--LGVAVIGIDEGQFFP 103 (234)
T ss_dssp HH--TTCSEEEESSGGGCT
T ss_pred Hh--ccCCEEEEEchhhhh
Confidence 22 469999999998874
No 457
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.34 E-value=0.0021 Score=56.70 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAY 123 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~ 123 (411)
.+++++|++||||||++..|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999984
No 458
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.33 E-value=0.0023 Score=57.61 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.|+|+|++||||||++..|+..+ | ...++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---E--IPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CcEeeH
Confidence 48899999999999999998654 3 345555
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.32 E-value=0.0014 Score=62.36 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRA 142 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~ 142 (411)
+.+|+++|+|||||||++..|+..+ .....++.|.+|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHH
Confidence 3679999999999999999998521 2356777776553
No 460
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.32 E-value=0.0071 Score=59.26 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
.++.++|.|+||+||||++..++..+ +.....+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 45669999999999999999998654 455555554
No 461
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.31 E-value=0.0021 Score=66.94 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFR 141 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r 141 (411)
.+.+|.++|.+||||||++..|+..+..+|+++.+++.|..|
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 357899999999999999999999998889999999987543
No 462
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.29 E-value=0.0026 Score=54.65 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
+|+|+|++||||||++..|+.++ | ..+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---N--IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---T--CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEECcHH
Confidence 58999999999999999999655 3 345666643
No 463
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.29 E-value=0.0029 Score=58.01 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
.+..|+|+|++||||||++..|+.++ | ...++.|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 45679999999999999999999765 2 4456653
No 464
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.011 Score=56.05 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKK 128 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~ 128 (411)
++|.|++|+||||++..++..+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 8999999999999999999887543
No 465
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.25 E-value=0.0026 Score=64.92 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
.+.+|+++|.|||||||++.+|+..+...+.+.-.++.|.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 46789999999999999999999988766666655555433
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.25 E-value=0.0029 Score=54.62 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
..+|+++|.+||||||++..|+..| | .-+++.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l---g--~~~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL---K--LEVLDTDM 40 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh---C--CCEEEChH
Confidence 4679999999999999999999654 3 34566653
No 467
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.23 E-value=0.032 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
+..+++|+|++||||||+++.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34679999999999999999998443
No 468
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.21 E-value=0.0014 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH-HHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYA-YYH 125 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa-~~l 125 (411)
+..+++|+|++||||||++..|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44689999999999999999998 665
No 469
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.18 E-value=0.0075 Score=63.75 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKI 157 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v 157 (411)
..++.|+||+||||++..++.++.+ .+.+|++++. ...|.+++.......++
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~~l~~~~~ 249 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTEKIHQTGL 249 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES---SHHHHHHHHHHHHTTTC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC---cHHHHHHHHHHHHhcCC
Confidence 4778899999999999999998886 5777777765 55666666554333333
No 470
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.18 E-value=0.0034 Score=55.84 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++++|.+||||||++-+|+.. |.++..+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEec
Confidence 789999999999999999843 556666665
No 471
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.16 E-value=0.0069 Score=59.39 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+-++|.|+||+|||+++..+|..+ +.....+++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 448999999999999999999766 444444443
No 472
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.15 E-value=0.0025 Score=57.36 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCAD 138 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D 138 (411)
.|+|+|+|||||||++..|+..+ ....++.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHH
Confidence 48899999999999999998443 34556663
No 473
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.14 E-value=0.0051 Score=55.27 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQ 150 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~ 150 (411)
.|+|=|.-||||||.+..|+.+|..+|++|.+... |.+....+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre-P~~t~~~~~ir~ 48 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE-PGGTETGEKIRK 48 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCCcHHHHHHH
Confidence 47788999999999999999999999998876554 433333344443
No 474
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.12 E-value=0.05 Score=52.57 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQK 127 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~ 127 (411)
++.+.|.|++|+||||++..+|..+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 466999999999999999999988754
No 475
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.12 E-value=0.004 Score=62.67 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
..+++++|++|||||||++.|+..+.....++.++..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 4679999999999999999999887654455665554
No 476
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.11 E-value=0.029 Score=57.31 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=41.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
+-++|+|+||+||||++..++..+ +....-+++..+. ..+. .......+..+..+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~----------------~~~~----g~~~~~~r~lf~~A~~ 106 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV----------------ELFV----GVGAARVRDLFAQAKA 106 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT----------------TCCT----THHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH----------------HHHh----cccHHHHHHHHHHHHh
Confidence 348999999999999999999644 3344434431110 0000 0012223444556666
Q ss_pred CCCCEEEEeCCC
Q 015221 182 ENCDLIIVDTSG 193 (411)
Q Consensus 182 ~~~d~viIDTaG 193 (411)
..+.++|||-+.
T Consensus 107 ~~p~ILfIDEid 118 (476)
T 2ce7_A 107 HAPCIVFIDEID 118 (476)
T ss_dssp TCSEEEEEETGG
T ss_pred cCCCEEEEechh
Confidence 678899999774
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.11 E-value=0.007 Score=60.51 Aligned_cols=84 Identities=17% Similarity=0.184 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc---CcchHHHHH-HHhhhhcCcceeccCC-----CCC---h
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT---FRAGAFDQL-KQNATKAKIPFYGSYT-----ESD---P 168 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~---~r~~a~~qL-~~~~~~~~v~~~~~~~-----~~d---~ 168 (411)
+++|+|+||+||||||++..||..+. ..+|++|. ||.-.+--- -...++.++|.+-... .-+ .
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F 76 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRF 76 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHH
Confidence 46789999999999999999996653 35788885 442111000 1223456676653221 111 2
Q ss_pred HHHHHHHHHHHhcCCCCEEEE
Q 015221 169 VRIAVEGVETFKKENCDLIIV 189 (411)
Q Consensus 169 ~~i~~~~l~~~~~~~~d~viI 189 (411)
.+.+...++.+...|.-.|||
T Consensus 77 ~~~a~~~i~~i~~~g~~pilV 97 (409)
T 3eph_A 77 ETECMNAIEDIHRRGKIPIVV 97 (409)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 234555566665556555553
No 478
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.012 Score=55.71 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKK 128 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~ 128 (411)
++|.|++|+||||++..++..+...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCC
Confidence 8999999999999999999887543
No 479
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.10 E-value=0.0036 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
.|+|.|++||||||++..|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999766
No 480
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.09 E-value=0.01 Score=64.08 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
..++|+|+||+|||+++..++..+...+....-+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~ 557 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec
Confidence 369999999999999999999998776777777777
No 481
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.05 E-value=0.0036 Score=57.33 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++|+||+||||||+++.|+..+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3679999999999999999999554
No 482
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.04 E-value=0.003 Score=61.49 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=44.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcCcchHHHHHHHhhhhcCcceeccCCCCChHHHHHHHHHHHhc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVRIAVEGVETFKK 181 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~~~~~~~~~d~~~i~~~~l~~~~~ 181 (411)
..++++|++||||||+++.|+..+......+.+=+.+.+... ..+..+.++. +.+ ...+.++..+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--------~~~~~i~~~~-ggg----~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--------HHKNYTQLFF-GGN----ITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--------SCSSEEEEEC-BTT----BCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--------cchhEEEEEe-CCC----hhHHHHHHHHhh
Confidence 469999999999999999999665433333333222211110 0011122221 011 112344555556
Q ss_pred CCCCEEEEeCCCC
Q 015221 182 ENCDLIIVDTSGR 194 (411)
Q Consensus 182 ~~~d~viIDTaG~ 194 (411)
.+.+++++|-|-.
T Consensus 239 ~~p~ilildE~~~ 251 (330)
T 2pt7_A 239 MRPDRIILGELRS 251 (330)
T ss_dssp SCCSEEEECCCCS
T ss_pred hCCCEEEEcCCCh
Confidence 6889999998764
No 483
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.03 E-value=0.017 Score=56.84 Aligned_cols=38 Identities=26% Similarity=0.197 Sum_probs=29.5
Q ss_pred CeEEEE--EcCCCCcHHHHHHHHHHHHHHc------CCCceEeccC
Q 015221 101 PSVIMF--VGLQGSGKTTTCTKYAYYHQKK------GWKPALVCAD 138 (411)
Q Consensus 101 ~~vI~l--vG~~GvGKTTl~~kLa~~l~~~------g~kv~lV~~D 138 (411)
+..+++ +|++|+||||++..++..+... +..+..+++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 456777 9999999999999999887653 4556666653
No 484
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.03 E-value=0.0037 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
.|+|+|++||||||++..|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999765
No 485
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.02 E-value=0.0059 Score=55.23 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
...|+|+|++|+||||++..|+ ++|. -+|+.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV----QRGH--RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecch
Confidence 4679999999999999999998 2344 7888874
No 486
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.02 E-value=0.0037 Score=58.18 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYY 124 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~ 124 (411)
..+|+|+|++||||||++..|+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999943
No 487
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.00 E-value=0.0045 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++++|+.||||||++..|+..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3679999999999999999999766
No 488
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.99 E-value=0.0045 Score=57.37 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADT 139 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~ 139 (411)
.+.+|+++|++||||||++..|+..+ | ...++.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 35689999999999999999999655 2 34556543
No 489
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.97 E-value=0.0098 Score=64.71 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=38.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHH-cCCCceEeccCcCcchHHHHHHHhhhhcCcc
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQK-KGWKPALVCADTFRAGAFDQLKQNATKAKIP 158 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~-~g~kv~lV~~D~~r~~a~~qL~~~~~~~~v~ 158 (411)
+.++.|+||+||||++..++.++.+ .+.++++++. ...|.+++.......+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~---tn~A~~~l~~~l~~~g~~ 426 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP---SNIAVDQLTEKIHQTGLK 426 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES---SHHHHHHHHHHHHTTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHHhCcc
Confidence 5778999999999999999999887 5677776665 456666665544333433
No 490
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.025 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQ 126 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~ 126 (411)
++|.|+||+||||++..++..+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998875
No 491
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.92 E-value=0.0052 Score=59.22 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
..+++|+|++|+||||++..|+..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3679999999999999999999887
No 492
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.91 E-value=0.0084 Score=61.08 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQK 127 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~ 127 (411)
.-++|+|+||+||||++..|+..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34789999999999999999988865
No 493
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.87 E-value=0.028 Score=55.92 Aligned_cols=48 Identities=15% Similarity=0.039 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCc--eEeccCcCcchHHHHH
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKP--ALVCADTFRAGAFDQL 148 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv--~lV~~D~~r~~a~~qL 148 (411)
+...++++|++|+||||+++.++.+..+++..+ .++..| .|+..+.++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG-ER~~Ev~~~ 222 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID-ERPEEVTEM 222 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES-SCHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec-CChHHHHHH
Confidence 446799999999999999999999887755443 344444 344444444
No 494
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.82 E-value=0.03 Score=55.26 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
++-++|.|+||+|||+++..+|.. .+..+..+++
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 456999999999999999999754 3555555555
No 495
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.81 E-value=0.0039 Score=52.79 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 104 IMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 104 I~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
|++.|+||+|||+++..++......+.... +++
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EEC
Confidence 899999999999999999876655565555 666
No 496
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.81 E-value=0.0047 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 015221 101 PSVIMFVGLQGSGKTTTCTKYAY 123 (411)
Q Consensus 101 ~~vI~lvG~~GvGKTTl~~kLa~ 123 (411)
..+++++|++||||||++..|+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46799999999999999999993
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.80 E-value=0.034 Score=54.29 Aligned_cols=33 Identities=30% Similarity=0.301 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
..++|.|+||+||||++..+|..+ +.....+++
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 458999999999999999999766 444444444
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.78 E-value=0.008 Score=60.82 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEecc
Q 015221 100 KPSVIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCA 137 (411)
Q Consensus 100 ~~~vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~ 137 (411)
+++-++|.|+||+|||+++..+|..+ .+.....+++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 34669999999999999999999765 2334444444
No 499
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.74 E-value=0.0065 Score=53.92 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCCceEeccCcC
Q 015221 103 VIMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTF 140 (411)
Q Consensus 103 vI~lvG~~GvGKTTl~~kLa~~l~~~g~kv~lV~~D~~ 140 (411)
+|+|+|++||||||++..|+..+ .+.+++.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d~~ 36 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-----GVPYLSSGLL 36 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CCceeccchH
Confidence 79999999999999999999544 2566777643
No 500
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.73 E-value=0.0052 Score=55.91 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 015221 102 SVIMFVGLQGSGKTTTCTKYAYYH 125 (411)
Q Consensus 102 ~vI~lvG~~GvGKTTl~~kLa~~l 125 (411)
+.+++.||||+||||++..|+..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999877
Done!