Query 015223
Match_columns 411
No_of_seqs 115 out of 1230
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 9.6E-54 2.1E-58 439.0 27.9 394 5-407 141-541 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 5.9E-45 1.3E-49 357.9 19.6 325 14-381 115-453 (498)
3 PRK15462 dipeptide/tripeptide 100.0 1.4E-37 3E-42 315.1 31.0 333 17-383 101-439 (493)
4 PF00854 PTR2: POT family; In 100.0 1.1E-38 2.5E-43 316.0 9.7 340 11-369 28-371 (372)
5 PRK10207 dipeptide/tripeptide 100.0 8.8E-34 1.9E-38 290.2 31.0 331 17-383 106-440 (489)
6 TIGR00926 2A1704 Peptide:H+ sy 100.0 2.5E-33 5.4E-38 293.0 33.8 252 15-309 84-342 (654)
7 TIGR00924 yjdL_sub1_fam amino 100.0 3.6E-33 7.9E-38 285.1 31.4 329 15-382 101-441 (475)
8 PRK09584 tppB putative tripept 100.0 4.4E-32 9.6E-37 278.7 30.5 321 16-382 112-442 (500)
9 TIGR00900 2A0121 H+ Antiporter 99.6 7.4E-13 1.6E-17 129.3 24.8 267 14-382 90-361 (365)
10 PRK14995 methyl viologen resis 99.6 4.8E-13 1E-17 137.7 24.2 315 14-383 92-412 (495)
11 TIGR00711 efflux_EmrB drug res 99.5 3E-13 6.5E-18 138.2 19.7 318 14-383 88-409 (485)
12 PF07690 MFS_1: Major Facilita 99.5 4.1E-13 8.9E-18 130.5 17.3 266 15-375 84-352 (352)
13 PRK11646 multidrug resistance 99.5 5.9E-12 1.3E-16 126.1 21.8 259 15-384 98-359 (400)
14 PRK03545 putative arabinose tr 99.5 1.6E-11 3.5E-16 122.2 24.0 260 14-383 95-354 (390)
15 TIGR00893 2A0114 d-galactonate 99.4 2.8E-11 6.2E-16 118.8 23.7 85 15-105 81-165 (399)
16 PRK10504 putative transporter; 99.4 2E-11 4.4E-16 124.5 23.3 312 15-381 97-412 (471)
17 PRK10489 enterobactin exporter 99.4 5.8E-11 1.2E-15 119.3 24.1 265 15-383 109-373 (417)
18 cd06174 MFS The Major Facilita 99.4 7.3E-11 1.6E-15 114.1 23.3 241 14-383 85-326 (352)
19 PRK06814 acylglycerophosphoeth 99.4 2E-11 4.4E-16 137.8 21.8 279 14-382 106-394 (1140)
20 PRK12382 putative transporter; 99.4 1.2E-10 2.6E-15 115.9 24.7 253 14-383 110-363 (392)
21 PRK11551 putative 3-hydroxyphe 99.4 9.5E-11 2.1E-15 117.1 23.9 268 14-383 101-369 (406)
22 TIGR00902 2A0127 phenyl propri 99.4 1E-10 2.2E-15 116.3 23.6 263 13-383 91-354 (382)
23 PRK05122 major facilitator sup 99.4 2.6E-10 5.5E-15 113.8 26.4 251 15-382 111-362 (399)
24 PRK11128 putative 3-phenylprop 99.4 1.9E-10 4.2E-15 114.3 23.9 259 14-383 92-354 (382)
25 TIGR00895 2A0115 benzoate tran 99.3 4.3E-10 9.3E-15 111.0 25.4 83 15-103 104-186 (398)
26 PRK15402 multidrug efflux syst 99.3 3.3E-10 7.3E-15 113.3 24.8 271 15-384 100-370 (406)
27 PF05977 MFS_3: Transmembrane 99.3 2.5E-10 5.5E-15 117.7 23.6 268 13-383 100-368 (524)
28 PRK09874 drug efflux system pr 99.3 8.7E-11 1.9E-15 117.2 19.5 268 14-383 105-372 (408)
29 PRK10213 nepI ribonucleoside t 99.3 6E-10 1.3E-14 111.4 25.3 82 14-101 106-187 (394)
30 TIGR00899 2A0120 sugar efflux 99.3 8.8E-10 1.9E-14 108.5 24.5 89 14-106 85-173 (375)
31 TIGR00901 2A0125 AmpG-related 99.3 8.7E-10 1.9E-14 108.2 24.2 261 14-368 81-355 (356)
32 PRK11195 lysophospholipid tran 99.3 7.1E-10 1.5E-14 110.8 22.8 259 20-383 92-355 (393)
33 PRK10054 putative transporter; 99.3 1.3E-10 2.9E-15 116.1 17.2 263 16-383 96-358 (395)
34 TIGR00891 2A0112 putative sial 99.3 1.1E-09 2.3E-14 108.7 23.2 80 15-100 99-180 (405)
35 TIGR00710 efflux_Bcr_CflA drug 99.3 1.3E-09 2.8E-14 107.6 23.0 87 14-106 91-177 (385)
36 TIGR00894 2A0114euk Na(+)-depe 99.2 2E-09 4.4E-14 109.8 24.3 83 15-103 130-213 (465)
37 TIGR00903 2A0129 major facilit 99.2 2.3E-09 4.9E-14 106.3 22.9 80 15-101 78-157 (368)
38 TIGR00883 2A0106 metabolite-pr 99.2 1.2E-09 2.7E-14 107.5 21.0 79 17-101 97-183 (394)
39 TIGR00881 2A0104 phosphoglycer 99.2 1.1E-09 2.3E-14 107.3 20.3 85 15-105 82-167 (379)
40 PRK12307 putative sialic acid 99.2 1.4E-09 3E-14 109.4 21.0 78 14-97 104-181 (426)
41 TIGR00890 2A0111 Oxalate/Forma 99.2 1.7E-09 3.7E-14 105.8 20.9 268 14-383 89-356 (377)
42 PRK15011 sugar efflux transpor 99.2 3.8E-09 8.3E-14 105.4 23.7 78 22-104 112-189 (393)
43 PRK08633 2-acyl-glycerophospho 99.2 2.8E-09 6E-14 120.5 23.9 267 15-382 102-382 (1146)
44 PRK11652 emrD multidrug resist 99.2 9.3E-09 2E-13 102.4 24.1 82 14-101 94-175 (394)
45 PRK10077 xylE D-xylose transpo 99.2 1E-08 2.2E-13 104.7 24.7 84 14-103 118-209 (479)
46 TIGR00879 SP MFS transporter, 99.2 5.6E-09 1.2E-13 105.4 22.1 85 14-104 125-212 (481)
47 TIGR00892 2A0113 monocarboxyla 99.2 3.3E-09 7.2E-14 108.1 20.5 285 16-383 107-394 (455)
48 PRK11102 bicyclomycin/multidru 99.1 1.8E-08 3.9E-13 99.4 24.3 85 15-105 78-162 (377)
49 PRK11663 regulatory protein Uh 99.1 1.9E-08 4.1E-13 101.8 24.3 81 15-101 110-190 (434)
50 PRK11043 putative transporter; 99.1 9.2E-09 2E-13 102.7 21.7 85 15-105 93-177 (401)
51 PRK10642 proline/glycine betai 99.1 2.5E-08 5.5E-13 102.6 25.3 75 17-97 119-201 (490)
52 PRK10406 alpha-ketoglutarate t 99.1 2.2E-08 4.7E-13 101.3 24.5 78 16-99 124-209 (432)
53 TIGR00898 2A0119 cation transp 99.1 1.6E-08 3.4E-13 104.2 23.5 83 14-105 178-260 (505)
54 PRK09705 cynX putative cyanate 99.1 2E-08 4.3E-13 100.4 23.3 77 14-97 95-172 (393)
55 PRK10091 MFS transport protein 99.1 1.5E-08 3.3E-13 100.6 22.1 84 14-103 89-172 (382)
56 COG2814 AraJ Arabinose efflux 99.1 1.4E-08 2.9E-13 100.0 20.9 87 13-105 98-184 (394)
57 KOG2532 Permease of the major 99.1 9.1E-09 2E-13 104.6 20.2 279 17-383 129-418 (466)
58 TIGR00792 gph sugar (Glycoside 99.1 1.4E-08 3.1E-13 102.3 21.6 267 16-383 99-379 (437)
59 TIGR01299 synapt_SV2 synaptic 99.1 2.9E-08 6.4E-13 106.1 24.7 84 15-104 254-350 (742)
60 PRK09952 shikimate transporter 99.1 7.5E-08 1.6E-12 97.7 26.6 75 17-97 126-208 (438)
61 PRK15403 multidrug efflux syst 99.1 3.3E-08 7.2E-13 99.5 23.7 85 14-104 102-186 (413)
62 PRK10473 multidrug efflux syst 99.1 3.1E-08 6.7E-13 98.6 23.1 85 15-105 90-174 (392)
63 PRK03699 putative transporter; 99.1 8.7E-08 1.9E-12 95.6 25.3 84 14-103 93-177 (394)
64 PRK11010 ampG muropeptide tran 99.1 5.2E-08 1.1E-12 100.4 24.2 86 13-104 104-190 (491)
65 PRK03633 putative MFS family t 99.0 4E-08 8.7E-13 97.5 22.6 72 14-91 92-163 (381)
66 PRK15075 citrate-proton sympor 99.0 6.7E-08 1.4E-12 97.8 24.3 73 18-96 119-199 (434)
67 PRK11273 glpT sn-glycerol-3-ph 99.0 1.2E-07 2.7E-12 96.4 26.0 83 15-103 119-202 (452)
68 PRK03893 putative sialic acid 99.0 1.7E-08 3.6E-13 103.7 19.7 77 15-97 107-183 (496)
69 TIGR00896 CynX cyanate transpo 99.0 1.1E-07 2.3E-12 93.4 24.2 260 15-385 86-349 (355)
70 TIGR00897 2A0118 polyol permea 99.0 1.2E-07 2.6E-12 94.9 25.0 75 15-95 104-179 (402)
71 KOG1330 Sugar transporter/spin 99.0 6.6E-10 1.4E-14 109.4 6.8 88 14-107 119-207 (493)
72 TIGR02332 HpaX 4-hydroxyphenyl 99.0 1.4E-07 3.1E-12 94.8 23.8 82 14-101 94-181 (412)
73 PRK09556 uhpT sugar phosphate 99.0 7.3E-08 1.6E-12 98.5 21.2 81 14-100 120-203 (467)
74 PRK09528 lacY galactoside perm 98.9 3E-08 6.5E-13 99.8 17.3 112 247-383 265-377 (420)
75 TIGR01272 gluP glucose/galacto 98.9 2.3E-07 5E-12 89.8 22.6 85 10-100 4-104 (310)
76 TIGR00882 2A0105 oligosacchari 98.9 1.1E-07 2.3E-12 94.9 19.4 267 19-383 102-369 (396)
77 TIGR01301 GPH_sucrose GPH fami 98.9 2.5E-07 5.5E-12 94.2 22.1 299 17-384 115-444 (477)
78 TIGR00712 glpT glycerol-3-phos 98.9 2.8E-07 6E-12 93.4 22.2 85 15-105 117-202 (438)
79 PRK11902 ampG muropeptide tran 98.9 5.3E-07 1.1E-11 90.2 23.2 84 14-103 92-176 (402)
80 PRK09848 glucuronide transport 98.9 4.9E-07 1.1E-11 91.9 23.2 105 255-382 275-386 (448)
81 PF13347 MFS_2: MFS/sugar tran 98.9 2E-07 4.3E-12 94.2 19.6 269 15-384 102-384 (428)
82 COG2271 UhpC Sugar phosphate p 98.9 8.2E-08 1.8E-12 94.0 15.7 284 15-383 116-408 (448)
83 TIGR00887 2A0109 phosphate:H+ 98.8 1.8E-06 3.8E-11 89.2 25.1 80 16-101 115-217 (502)
84 PRK10133 L-fucose transporter; 98.8 7.8E-07 1.7E-11 90.3 21.4 64 13-82 114-177 (438)
85 KOG3764 Vesicular amine transp 98.8 1E-07 2.2E-12 92.4 14.0 93 13-110 156-248 (464)
86 PRK09669 putative symporter Ya 98.8 1.4E-06 3E-11 88.5 23.2 106 255-383 275-387 (444)
87 TIGR00788 fbt folate/biopterin 98.8 8.8E-08 1.9E-12 98.1 13.4 290 16-384 120-413 (468)
88 TIGR00886 2A0108 nitrite extru 98.8 5.1E-07 1.1E-11 88.5 18.0 76 15-97 90-176 (366)
89 PF06609 TRI12: Fungal trichot 98.7 2E-06 4.2E-11 89.4 22.2 320 11-381 126-464 (599)
90 TIGR02718 sider_RhtX_FptX side 98.7 7.7E-06 1.7E-10 81.4 25.0 58 326-383 307-365 (390)
91 PRK10429 melibiose:sodium symp 98.7 4E-06 8.6E-11 86.0 21.6 115 249-383 271-392 (473)
92 PLN00028 nitrate transmembrane 98.6 2.6E-06 5.7E-11 87.4 19.9 83 15-104 123-214 (476)
93 TIGR00889 2A0110 nucleoside tr 98.6 4E-06 8.7E-11 84.5 20.5 116 247-383 254-370 (418)
94 PF03209 PUCC: PUCC protein; 98.6 1.4E-05 3.1E-10 78.5 22.9 274 11-383 84-362 (403)
95 TIGR00885 fucP L-fucose:H+ sym 98.6 2.2E-05 4.8E-10 79.0 24.0 82 13-100 91-198 (410)
96 TIGR00805 oat sodium-independe 98.4 7.8E-06 1.7E-10 86.8 17.7 88 15-108 171-280 (633)
97 KOG2615 Permease of the major 98.4 6.6E-06 1.4E-10 79.7 15.1 71 323-394 353-423 (451)
98 PRK11462 putative transporter; 98.4 0.00013 2.8E-09 74.6 24.9 85 17-106 110-201 (460)
99 PRK15034 nitrate/nitrite trans 98.4 7.1E-05 1.5E-09 76.0 21.3 87 14-107 126-230 (462)
100 TIGR02332 HpaX 4-hydroxyphenyl 98.1 6.3E-05 1.4E-09 75.6 15.3 109 248-381 47-155 (412)
101 TIGR00891 2A0112 putative sial 98.0 9.8E-05 2.1E-09 73.1 14.7 113 246-383 49-161 (405)
102 COG2223 NarK Nitrate/nitrite t 98.0 0.00016 3.5E-09 71.1 14.9 87 17-111 106-195 (417)
103 PRK11646 multidrug resistance 98.0 0.00013 2.9E-09 73.0 14.8 107 251-382 53-159 (400)
104 PRK14995 methyl viologen resis 98.0 0.00023 5.1E-09 73.4 16.6 113 246-383 43-156 (495)
105 PRK03545 putative arabinose tr 98.0 0.0001 2.2E-09 73.3 13.3 111 247-382 47-157 (390)
106 COG2807 CynX Cyanate permease 98.0 0.0018 3.8E-08 62.9 20.9 85 15-106 98-183 (395)
107 PRK11551 putative 3-hydroxyphe 98.0 0.00025 5.4E-09 70.7 15.9 111 246-381 52-162 (406)
108 KOG2533 Permease of the major 98.0 0.0012 2.5E-08 67.9 20.8 89 13-107 131-225 (495)
109 KOG1330 Sugar transporter/spin 98.0 3E-05 6.5E-10 77.0 8.8 114 247-385 71-184 (493)
110 TIGR00880 2_A_01_02 Multidrug 97.9 0.00018 3.9E-09 59.4 11.9 108 250-382 4-111 (141)
111 TIGR00926 2A1704 Peptide:H+ sy 97.9 0.00067 1.5E-08 72.1 18.9 253 15-313 81-343 (654)
112 TIGR00711 efflux_EmrB drug res 97.9 0.00025 5.5E-09 72.3 15.3 113 246-383 39-151 (485)
113 PRK10054 putative transporter; 97.9 0.00025 5.4E-09 70.9 14.9 112 246-382 45-156 (395)
114 TIGR00880 2_A_01_02 Multidrug 97.9 4.5E-05 9.8E-10 63.0 7.6 86 15-106 50-135 (141)
115 PF01306 LacY_symp: LacY proto 97.9 0.0013 2.8E-08 65.7 19.0 63 320-382 310-373 (412)
116 PRK03633 putative MFS family t 97.9 0.00043 9.3E-09 68.6 15.8 113 246-383 43-155 (381)
117 PRK12307 putative sialic acid 97.9 0.00032 7E-09 70.4 15.0 110 247-381 56-165 (426)
118 KOG0255 Synaptic vesicle trans 97.9 0.0051 1.1E-07 63.7 24.1 83 13-104 168-250 (521)
119 PRK10213 nepI ribonucleoside t 97.9 0.00044 9.5E-09 69.1 15.5 111 248-383 59-169 (394)
120 COG2814 AraJ Arabinose efflux 97.9 0.00022 4.8E-09 70.5 12.9 114 246-384 50-163 (394)
121 PF11700 ATG22: Vacuole efflux 97.8 0.013 2.8E-07 60.2 26.1 61 325-385 383-443 (477)
122 TIGR00885 fucP L-fucose:H+ sym 97.8 0.00051 1.1E-08 69.1 15.3 115 246-382 40-154 (410)
123 PRK05122 major facilitator sup 97.8 5E-05 1.1E-09 75.6 7.9 90 16-111 302-391 (399)
124 PRK11663 regulatory protein Uh 97.8 0.00056 1.2E-08 69.2 15.6 110 247-381 61-170 (434)
125 PF07690 MFS_1: Major Facilita 97.8 0.00043 9.3E-09 67.0 14.2 112 246-382 34-145 (352)
126 TIGR00710 efflux_Bcr_CflA drug 97.8 0.00036 7.8E-09 68.6 13.3 111 247-382 43-153 (385)
127 TIGR00893 2A0114 d-galactonate 97.8 0.00026 5.6E-09 69.2 11.9 111 246-381 31-141 (399)
128 TIGR00895 2A0115 benzoate tran 97.7 0.00033 7.1E-09 68.9 12.1 111 247-382 55-165 (398)
129 TIGR00900 2A0121 H+ Antiporter 97.7 0.00036 7.8E-09 67.8 12.1 116 247-382 37-152 (365)
130 PRK10091 MFS transport protein 97.7 0.00059 1.3E-08 67.7 13.6 112 246-382 40-151 (382)
131 TIGR00879 SP MFS transporter, 97.7 0.00039 8.5E-09 70.0 12.4 111 246-378 73-183 (481)
132 TIGR01299 synapt_SV2 synaptic 97.7 0.0013 2.8E-08 70.9 16.7 110 247-381 205-314 (742)
133 TIGR00886 2A0108 nitrite extru 97.7 0.00097 2.1E-08 65.2 14.5 110 246-380 39-148 (366)
134 PRK10133 L-fucose transporter; 97.7 0.0013 2.8E-08 66.8 15.7 113 247-381 64-176 (438)
135 PRK10504 putative transporter; 97.7 0.00099 2.1E-08 68.0 15.0 111 248-383 49-159 (471)
136 COG2211 MelB Na+/melibiose sym 97.7 0.0052 1.1E-07 62.2 19.6 269 14-381 110-393 (467)
137 PRK09874 drug efflux system pr 97.7 0.0017 3.8E-08 64.5 16.2 110 247-382 57-166 (408)
138 PRK03893 putative sialic acid 97.6 0.0017 3.8E-08 66.5 15.9 110 247-381 58-167 (496)
139 PF03825 Nuc_H_symport: Nucleo 97.6 0.017 3.6E-07 58.0 22.4 90 283-383 271-363 (400)
140 PF03092 BT1: BT1 family; Int 97.6 0.0011 2.3E-08 67.4 13.8 90 15-108 85-174 (433)
141 KOG0569 Permease of the major 97.6 0.01 2.3E-07 60.5 20.7 88 14-107 114-203 (485)
142 cd06174 MFS The Major Facilita 97.6 0.00069 1.5E-08 65.2 11.8 113 246-383 36-148 (352)
143 PRK09556 uhpT sugar phosphate 97.6 0.00022 4.7E-09 72.9 8.5 113 247-379 67-179 (467)
144 PRK11195 lysophospholipid tran 97.6 0.00069 1.5E-08 67.7 11.8 108 246-381 40-147 (393)
145 PRK15402 multidrug efflux syst 97.5 0.0028 6E-08 63.3 15.8 109 249-382 53-161 (406)
146 PRK10473 multidrug efflux syst 97.5 0.0014 3.1E-08 65.0 13.6 110 248-382 42-151 (392)
147 PRK12382 putative transporter; 97.5 0.00024 5.1E-09 70.6 7.8 86 16-107 302-387 (392)
148 PRK03699 putative transporter; 97.5 0.002 4.3E-08 64.2 14.0 110 247-381 45-154 (394)
149 PRK15403 multidrug efflux syst 97.5 0.002 4.3E-08 64.9 13.9 110 248-382 55-164 (413)
150 TIGR00889 2A0110 nucleoside tr 97.5 0.00027 5.9E-09 71.3 7.5 87 16-108 308-401 (418)
151 PRK09705 cynX putative cyanate 97.5 0.0012 2.5E-08 65.9 11.9 110 246-381 46-155 (393)
152 TIGR00894 2A0114euk Na(+)-depe 97.4 0.00096 2.1E-08 68.0 10.7 113 248-383 80-192 (465)
153 KOG0254 Predicted transporter 97.4 0.021 4.5E-07 59.2 20.4 84 15-104 141-225 (513)
154 PRK11102 bicyclomycin/multidru 97.4 0.0018 3.9E-08 63.7 11.9 110 248-382 30-139 (377)
155 KOG4686 Predicted sugar transp 97.4 0.0017 3.7E-08 61.0 10.7 274 14-385 134-415 (459)
156 PRK10489 enterobactin exporter 97.4 0.003 6.5E-08 63.4 13.4 116 246-381 54-169 (417)
157 TIGR00887 2A0109 phosphate:H+ 97.4 0.0018 4E-08 66.8 12.1 116 248-382 60-175 (502)
158 TIGR00881 2A0104 phosphoglycer 97.4 0.00048 1E-08 67.2 7.4 104 247-375 33-136 (379)
159 TIGR00712 glpT glycerol-3-phos 97.4 0.003 6.5E-08 63.9 13.4 113 246-379 63-175 (438)
160 KOG3764 Vesicular amine transp 97.3 0.00059 1.3E-08 66.8 7.5 115 244-383 106-221 (464)
161 PRK10077 xylE D-xylose transpo 97.3 0.0042 9.2E-08 63.3 14.3 121 248-381 59-179 (479)
162 TIGR00806 rfc RFC reduced fola 97.3 0.0096 2.1E-07 60.5 16.1 98 258-381 76-173 (511)
163 PRK11652 emrD multidrug resist 97.3 0.0071 1.5E-07 60.0 14.9 111 247-382 46-156 (394)
164 COG0738 FucP Fucose permease [ 97.3 0.053 1.1E-06 53.6 19.9 68 10-83 98-165 (422)
165 TIGR00903 2A0129 major facilit 97.3 0.0037 8E-08 62.0 12.5 109 249-383 31-139 (368)
166 TIGR00890 2A0111 Oxalate/Forma 97.2 0.0008 1.7E-08 65.6 7.0 78 18-101 297-374 (377)
167 PRK11273 glpT sn-glycerol-3-ph 97.2 0.0087 1.9E-07 60.9 14.8 105 248-373 67-171 (452)
168 TIGR00898 2A0119 cation transp 97.2 0.0016 3.4E-08 67.1 9.4 110 247-381 130-239 (505)
169 KOG2816 Predicted transporter 97.2 0.0014 3.1E-08 66.7 8.6 84 287-385 310-393 (463)
170 PRK11043 putative transporter; 97.2 0.011 2.3E-07 58.9 14.8 111 247-382 44-154 (401)
171 TIGR00806 rfc RFC reduced fola 97.1 0.039 8.5E-07 56.1 18.4 85 15-107 114-201 (511)
172 KOG2533 Permease of the major 97.1 0.016 3.4E-07 59.7 15.9 73 321-393 133-205 (495)
173 PRK10642 proline/glycine betai 97.1 0.0029 6.3E-08 65.1 10.8 110 255-381 68-177 (490)
174 TIGR00897 2A0118 polyol permea 97.1 0.01 2.2E-07 59.4 14.3 114 246-380 50-164 (402)
175 PRK08633 2-acyl-glycerophospho 97.1 0.005 1.1E-07 69.9 13.3 115 247-383 50-164 (1146)
176 COG2270 Permeases of the major 97.1 0.038 8.3E-07 54.9 17.4 86 286-385 319-404 (438)
177 PRK10207 dipeptide/tripeptide 97.1 0.0035 7.5E-08 64.6 10.5 108 252-383 58-168 (489)
178 PRK06814 acylglycerophosphoeth 97.0 0.0031 6.8E-08 71.7 10.6 112 250-383 58-169 (1140)
179 TIGR00892 2A0113 monocarboxyla 97.0 0.00091 2E-08 68.2 5.5 85 15-105 332-417 (455)
180 PRK10406 alpha-ketoglutarate t 97.0 0.013 2.7E-07 59.3 13.6 109 257-382 76-184 (432)
181 TIGR00805 oat sodium-independe 97.0 0.0029 6.3E-08 67.3 9.2 127 246-383 70-233 (633)
182 TIGR00924 yjdL_sub1_fam amino 96.9 0.0061 1.3E-07 62.6 10.4 112 247-383 51-166 (475)
183 TIGR00899 2A0120 sugar efflux 96.9 0.0025 5.4E-08 62.5 7.3 84 16-106 288-371 (375)
184 PF05977 MFS_3: Transmembrane 96.9 0.0081 1.8E-07 62.4 11.2 116 246-381 47-162 (524)
185 PLN00028 nitrate transmembrane 96.9 0.025 5.4E-07 58.1 14.6 104 251-380 78-181 (476)
186 COG2271 UhpC Sugar phosphate p 96.8 0.0055 1.2E-07 60.7 8.9 83 283-379 92-174 (448)
187 KOG0254 Predicted transporter 96.8 0.007 1.5E-07 62.8 10.0 110 247-381 92-201 (513)
188 KOG2504 Monocarboxylate transp 96.8 0.071 1.5E-06 55.2 17.3 313 14-385 132-451 (509)
189 PRK11902 ampG muropeptide tran 96.8 0.017 3.7E-07 57.6 12.5 107 258-381 46-153 (402)
190 KOG3626 Organic anion transpor 96.8 0.062 1.3E-06 57.2 16.8 91 16-112 237-346 (735)
191 PRK15034 nitrate/nitrite trans 96.8 0.044 9.5E-07 55.9 15.3 104 250-374 76-179 (462)
192 PTZ00207 hypothetical protein; 96.8 0.045 9.8E-07 57.5 15.7 100 260-379 77-176 (591)
193 TIGR00896 CynX cyanate transpo 96.7 0.015 3.2E-07 56.9 11.0 108 247-381 38-145 (355)
194 PRK11010 ampG muropeptide tran 96.7 0.049 1.1E-06 56.2 15.3 85 288-383 84-168 (491)
195 KOG2615 Permease of the major 96.7 0.003 6.5E-08 61.6 5.7 113 247-385 71-183 (451)
196 TIGR01301 GPH_sucrose GPH fami 96.6 0.041 8.9E-07 56.4 13.6 130 246-381 41-175 (477)
197 PRK15011 sugar efflux transpor 96.6 0.007 1.5E-07 60.3 7.9 84 17-107 306-389 (393)
198 TIGR00883 2A0106 metabolite-pr 96.6 0.0082 1.8E-07 58.7 8.3 107 258-381 49-155 (394)
199 PRK15075 citrate-proton sympor 96.5 0.024 5.3E-07 57.2 11.6 104 261-381 73-176 (434)
200 PRK09952 shikimate transporter 96.5 0.013 2.9E-07 59.3 9.5 104 261-381 81-184 (438)
201 TIGR00901 2A0125 AmpG-related 96.4 0.024 5.2E-07 55.3 10.7 106 261-383 38-144 (356)
202 PRK09584 tppB putative tripept 96.4 0.032 6.9E-07 57.7 11.6 101 258-382 71-174 (500)
203 PF03137 OATP: Organic Anion T 96.4 0.00072 1.6E-08 70.4 -0.6 93 15-113 140-254 (539)
204 KOG2325 Predicted transporter/ 96.3 0.026 5.5E-07 57.5 9.8 57 329-385 395-451 (488)
205 PRK09528 lacY galactoside perm 96.2 0.0075 1.6E-07 60.6 5.5 86 15-106 314-400 (420)
206 COG0738 FucP Fucose permease [ 96.0 0.094 2E-06 51.8 12.0 87 284-381 77-163 (422)
207 PF06609 TRI12: Fungal trichot 95.9 0.17 3.8E-06 53.1 14.3 121 235-383 71-191 (599)
208 PRK15462 dipeptide/tripeptide 95.9 0.075 1.6E-06 54.7 11.4 107 252-382 53-162 (493)
209 KOG2532 Permease of the major 95.8 0.049 1.1E-06 55.7 9.6 88 285-384 103-190 (466)
210 TIGR00902 2A0127 phenyl propri 95.8 0.028 6E-07 55.8 7.4 85 14-106 291-376 (382)
211 PF11700 ATG22: Vacuole efflux 95.7 0.04 8.6E-07 56.6 8.5 88 14-107 378-466 (477)
212 TIGR00792 gph sugar (Glycoside 95.6 0.045 9.7E-07 55.0 8.5 119 247-379 38-157 (437)
213 TIGR02718 sider_RhtX_FptX side 95.4 0.046 9.9E-07 54.2 7.6 75 23-102 310-384 (390)
214 PF05978 UNC-93: Ion channel r 95.2 0.59 1.3E-05 40.3 12.9 64 321-384 88-151 (156)
215 TIGR00882 2A0105 oligosacchari 95.2 0.23 5E-06 49.3 12.0 112 247-381 41-156 (396)
216 KOG3762 Predicted transporter 95.1 0.14 2.9E-06 52.5 9.6 111 246-381 408-519 (618)
217 PRK09669 putative symporter Ya 95.0 0.072 1.6E-06 54.0 7.8 75 14-88 317-392 (444)
218 PF03825 Nuc_H_symport: Nucleo 95.0 0.067 1.5E-06 53.7 7.2 84 19-108 304-394 (400)
219 KOG0569 Permease of the major 94.7 0.42 9.1E-06 49.0 12.2 100 258-379 74-173 (485)
220 KOG0253 Synaptic vesicle trans 94.2 3.6 7.9E-05 40.7 16.5 90 8-105 158-248 (528)
221 KOG2325 Predicted transporter/ 94.1 0.21 4.4E-06 51.0 8.3 117 247-384 74-191 (488)
222 KOG2504 Monocarboxylate transp 93.6 0.23 5E-06 51.5 7.9 110 246-381 83-193 (509)
223 PRK11128 putative 3-phenylprop 93.6 0.19 4.1E-06 49.7 7.1 80 14-101 291-371 (382)
224 PRK11462 putative transporter; 93.6 0.44 9.5E-06 48.7 9.8 109 258-380 59-168 (460)
225 KOG0252 Inorganic phosphate tr 93.1 0.77 1.7E-05 46.4 10.2 89 10-107 138-241 (538)
226 COG2223 NarK Nitrate/nitrite t 93.1 0.86 1.9E-05 45.4 10.5 114 241-375 43-156 (417)
227 KOG3098 Uncharacterized conser 92.9 12 0.00027 38.1 21.1 119 248-373 279-403 (461)
228 PF03209 PUCC: PUCC protein; 92.7 2.7 5.8E-05 41.9 13.3 93 288-381 53-148 (403)
229 PRK10429 melibiose:sodium symp 92.5 0.63 1.4E-05 47.6 9.1 117 248-378 46-163 (473)
230 PRK09848 glucuronide transport 91.7 0.56 1.2E-05 47.5 7.6 73 15-87 318-391 (448)
231 PTZ00207 hypothetical protein; 91.6 0.52 1.1E-05 49.7 7.4 77 14-99 118-195 (591)
232 TIGR01272 gluP glucose/galacto 91.2 0.68 1.5E-05 44.6 7.3 62 321-382 9-70 (310)
233 KOG4686 Predicted sugar transp 91.2 0.38 8.1E-06 45.7 5.1 80 20-105 356-438 (459)
234 COG2807 CynX Cyanate permease 90.4 2.7 5.8E-05 41.3 10.3 113 246-385 49-161 (395)
235 KOG0637 Sucrose transporter an 90.4 1.7 3.7E-05 43.9 9.1 161 202-379 33-200 (498)
236 TIGR00788 fbt folate/biopterin 89.8 0.97 2.1E-05 46.3 7.4 79 18-102 353-436 (468)
237 KOG2563 Permease of the major 89.7 2.8 6.2E-05 42.3 10.1 63 15-83 139-201 (480)
238 PF13347 MFS_2: MFS/sugar tran 89.4 1.2 2.5E-05 44.9 7.6 75 14-88 313-388 (428)
239 KOG0255 Synaptic vesicle trans 88.8 2 4.2E-05 44.5 8.9 103 255-383 129-231 (521)
240 PF00083 Sugar_tr: Sugar (and 88.6 0.0074 1.6E-07 61.0 -9.2 108 254-383 56-163 (451)
241 KOG1237 H+/oligopeptide sympor 88.3 3.5 7.5E-05 43.4 10.2 80 214-304 195-275 (571)
242 COG0477 ProP Permeases of the 87.4 1.8 4E-05 39.5 7.0 80 14-98 92-174 (338)
243 PF03137 OATP: Organic Anion T 86.8 0.12 2.6E-06 53.9 -1.6 99 285-383 68-202 (539)
244 PF02487 CLN3: CLN3 protein; 84.7 46 0.001 33.4 23.3 63 321-383 334-396 (402)
245 PF00854 PTR2: POT family; In 84.3 3.6 7.8E-05 40.5 7.7 90 288-382 4-96 (372)
246 COG0477 ProP Permeases of the 83.8 11 0.00025 34.1 10.4 63 321-383 93-157 (338)
247 COG2270 Permeases of the major 82.7 2.8 6E-05 42.0 5.9 80 21-106 346-426 (438)
248 PF00083 Sugar_tr: Sugar (and 81.9 0.067 1.4E-06 54.1 -6.0 80 14-99 100-182 (451)
249 PF01891 CbiM: Cobalt uptake s 78.4 27 0.00059 31.4 10.5 95 252-353 107-204 (205)
250 PF01306 LacY_symp: LacY proto 78.2 3.6 7.8E-05 41.4 5.1 85 14-104 310-395 (412)
251 PF03092 BT1: BT1 family; Int 77.1 21 0.00045 36.2 10.4 85 288-383 62-149 (433)
252 KOG2816 Predicted transporter 73.3 28 0.00061 35.6 10.2 100 254-383 72-173 (463)
253 PF07672 MFS_Mycoplasma: Mycop 72.9 36 0.00077 32.0 9.8 59 56-114 4-67 (267)
254 TIGR00769 AAA ADP/ATP carrier 71.3 1.3E+02 0.0028 31.0 18.5 41 36-82 149-189 (472)
255 KOG3626 Organic anion transpor 69.3 7.2 0.00016 42.0 5.0 100 285-384 162-299 (735)
256 COG2211 MelB Na+/melibiose sym 69.3 13 0.00028 38.1 6.5 111 259-383 63-174 (467)
257 PF05631 DUF791: Protein of un 69.0 23 0.00051 34.7 8.0 97 13-110 118-217 (354)
258 PRK07331 cobalt transport prot 65.9 99 0.0022 30.0 11.7 99 252-355 108-220 (322)
259 PRK11909 cobalt transport prot 63.7 1E+02 0.0023 28.3 10.9 36 322-357 183-219 (230)
260 PF06813 Nodulin-like: Nodulin 60.2 43 0.00092 31.3 7.8 90 284-381 65-154 (250)
261 PF13000 Acatn: Acetyl-coenzym 59.5 22 0.00047 36.7 6.0 57 320-376 400-459 (544)
262 TIGR00769 AAA ADP/ATP carrier 59.1 30 0.00065 35.5 7.1 70 26-100 276-345 (472)
263 PF03219 TLC: TLC ATP/ADP tran 57.9 1.8E+02 0.0039 30.1 12.5 40 38-83 166-205 (491)
264 TIGR00123 cbiM cobalamin biosy 57.8 1.4E+02 0.0029 27.2 10.4 98 252-355 110-212 (214)
265 KOG3762 Predicted transporter 56.3 15 0.00032 38.2 4.2 92 15-112 458-550 (618)
266 PRK06265 cobalt transport prot 55.7 1.5E+02 0.0033 26.4 10.9 93 253-355 103-197 (199)
267 PRK08319 cobalt transport prot 53.6 1.7E+02 0.0036 26.8 10.4 31 326-356 183-213 (224)
268 KOG0252 Inorganic phosphate tr 53.0 14 0.0003 37.7 3.3 62 40-107 430-496 (538)
269 PF06123 CreD: Inner membrane 51.1 1.4E+02 0.003 30.3 10.2 19 290-308 300-318 (430)
270 PRK11715 inner membrane protei 50.2 1.3E+02 0.0028 30.6 9.8 84 290-381 306-397 (436)
271 KOG4332 Predicted sugar transp 48.9 28 0.00062 33.1 4.5 89 11-105 339-427 (454)
272 PF06645 SPC12: Microsomal sig 46.9 75 0.0016 23.7 5.7 52 58-112 8-59 (76)
273 KOG2563 Permease of the major 46.5 90 0.002 31.8 7.9 88 288-384 112-202 (480)
274 PF03219 TLC: TLC ATP/ADP tran 46.2 70 0.0015 33.1 7.4 71 26-101 292-363 (491)
275 KOG3098 Uncharacterized conser 42.2 1.1E+02 0.0023 31.4 7.9 67 320-386 100-166 (461)
276 TIGR00939 2a57 Equilibrative N 41.8 68 0.0015 32.6 6.5 86 282-378 72-157 (437)
277 PF05978 UNC-93: Ion channel r 41.5 59 0.0013 28.0 5.1 59 15-79 88-146 (156)
278 PRK03612 spermidine synthase; 41.0 80 0.0017 32.9 7.0 76 22-104 116-193 (521)
279 TIGR02230 ATPase_gene1 F0F1-AT 38.5 1.6E+02 0.0034 23.3 6.6 33 59-91 44-76 (100)
280 PF02487 CLN3: CLN3 protein; 37.5 50 0.0011 33.1 4.6 62 16-83 335-396 (402)
281 PF09605 Trep_Strep: Hypotheti 33.9 3.3E+02 0.0072 24.0 9.6 19 320-338 102-120 (186)
282 PF14007 YtpI: YtpI-like prote 32.1 1.8E+02 0.0039 22.5 5.9 52 65-117 35-86 (89)
283 PF06963 FPN1: Ferroportin1 (F 32.0 5.6E+02 0.012 26.0 19.6 62 320-381 354-415 (432)
284 KOG3574 Acetyl-CoA transporter 31.6 5.7E+02 0.012 26.0 17.3 58 328-385 375-433 (510)
285 PF06813 Nodulin-like: Nodulin 29.1 2.5E+02 0.0055 26.1 7.6 71 28-107 15-85 (250)
286 PF06963 FPN1: Ferroportin1 (F 27.8 4.1E+02 0.0089 27.0 9.4 31 243-273 37-67 (432)
287 KOG4112 Signal peptidase subun 27.5 1.8E+02 0.004 22.6 5.1 51 59-112 24-74 (101)
288 COG3202 ATP/ADP translocase [E 27.0 7.3E+02 0.016 25.8 12.5 28 56-83 182-209 (509)
289 PF11151 DUF2929: Protein of u 26.9 2.3E+02 0.0049 19.9 6.0 36 62-97 6-41 (57)
290 COG3104 PTR2 Dipeptide/tripept 26.8 1.2E+02 0.0025 31.4 5.2 81 11-97 389-475 (498)
291 KOG4332 Predicted sugar transp 25.5 6.1E+02 0.013 24.4 14.9 38 326-363 348-385 (454)
292 TIGR00939 2a57 Equilibrative N 25.4 1.6E+02 0.0035 29.9 6.1 62 321-382 371-432 (437)
293 COG0310 CbiM ABC-type Co2+ tra 24.9 3.2E+02 0.0069 24.7 7.1 35 321-355 167-202 (204)
294 KOG3574 Acetyl-CoA transporter 23.7 2.8E+02 0.0062 28.0 7.0 113 255-379 78-190 (510)
295 KOG0637 Sucrose transporter an 22.7 83 0.0018 32.2 3.2 67 11-82 137-203 (498)
296 PF03988 DUF347: Repeat of Unk 21.8 2.8E+02 0.0061 19.1 5.1 28 64-91 4-31 (55)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-54 Score=438.97 Aligned_cols=394 Identities=42% Similarity=0.706 Sum_probs=351.7
Q ss_pred CCCcccccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc
Q 015223 5 SENCEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH 84 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~ 84 (411)
++.|++|+..+...++.++.++++|.|+.|||..++++|||++.++++++.+.++|+|+|+..|+|.+++-++..|++++
T Consensus 141 ~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~ 220 (571)
T KOG1237|consen 141 GNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDN 220 (571)
T ss_pred CCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 34689999999999999999999999999999999999999987777776678999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCcccc
Q 015223 85 SGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFL 164 (411)
Q Consensus 85 ~g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (411)
.||.++|.++.+.|++++++|+.+.+.|++++|.++|+..+.+|++.+.++++...+.+.....+... +.....+
T Consensus 221 ~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~-----~~~~~~~ 295 (571)
T KOG1237|consen 221 VGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCT-----DSVAIEG 295 (571)
T ss_pred ccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhcccccc-----ccccccC
Confidence 99999999999999999999999999999888999999999999999999998877665332211110 1122345
Q ss_pred ccchhhhhhhhhhhccC--CCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-
Q 015223 165 TQRFRFLDKACIKVEDG--TNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN- 241 (411)
Q Consensus 165 ~~~~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g- 241 (411)
++..+++|++++....+ .+...++|++|+.++|||.|.+++++|++...++||.++.|+.+.+++|+.+||++++ +
T Consensus 296 t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~-~~ 374 (571)
T KOG1237|consen 296 TKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLG-SN 374 (571)
T ss_pred CcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCC-CC
Confidence 66788999988754210 1134567999999999999999999999999999999999999999999999999998 6
Q ss_pred eeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhccc---CCC
Q 015223 242 FHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALD---SGK 318 (411)
Q Consensus 242 ~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~---~~~ 318 (411)
+++|+++++.++.+.+++..|++++...|+.+|.+++|+++++++|+++|+++..++|..++.+|..|++.+.+ ...
T Consensus 375 f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~ 454 (571)
T KOG1237|consen 375 FKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETN 454 (571)
T ss_pred eEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCC
Confidence 99999999999999999999999999999999998888889999999999999999999999999999987653 113
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccccCCCCCCCCC-CC
Q 015223 319 TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWLS-EN 397 (411)
Q Consensus 319 ~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~~~~~~~w~~-~~ 397 (411)
++|++|++|||+|+|+||+|.+++.+||.++++|++||+.++++|+++.++|++++.+++.++...|.. ..+|++ ||
T Consensus 455 ~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ 532 (571)
T KOG1237|consen 455 PMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFAN 532 (571)
T ss_pred CeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhH
Confidence 799999999999999999999999999999999999999999999999999999999999999887743 568999 77
Q ss_pred cCCccccccc
Q 015223 398 DLSTKTGLIF 407 (411)
Q Consensus 398 ~~~~~~~~~~ 407 (411)
||++|+..|
T Consensus 533 -ln~~~ld~F 541 (571)
T KOG1237|consen 533 -LNKGRLDYF 541 (571)
T ss_pred -hhhhHHHHH
Confidence 999999876
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-45 Score=357.89 Aligned_cols=325 Identities=19% Similarity=0.331 Sum_probs=256.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.....++++++++++|+|++|||++++++|+|+++|+| ||.+|+++|+++|+|++++|.+++++++++||+.+|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 56789999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceeccC--CCCCcchh------HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccc
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKR--PQGSIFTP------IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLT 165 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~--p~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (411)
+++.|.+++++++.+++++.+.. |+.+|++. ..+++....... ++. +...
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------~l~~ 248 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LTL------------LLNQ 248 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HHH------------HHHH
Confidence 99999999999999999886542 33333211 111111111100 000 0000
Q ss_pred cchhhhh-----hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH-HHhhcccCC
Q 015223 166 QRFRFLD-----KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQ-GSAMNNKLT 239 (411)
Q Consensus 166 ~~~~~l~-----~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~-~~~~~~~~g 239 (411)
+..++.- ...+.+.. ..++. .+++ +||||+++++++|+..++||++|+|++|.+..+ .++.|++..
T Consensus 249 ~~~~~~~~~~~i~~~~~~~~------~~~~~-~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~ 320 (498)
T COG3104 249 NTFSGVLLVISILIAIIYFA------EAFRS-PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF 320 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHhcc-CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence 0000000 00111100 00111 1233 789999999999999999999999999877544 477788755
Q ss_pred CCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 015223 240 KNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT 319 (411)
Q Consensus 240 ~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 319 (411)
|+++|++|+|++||+.+++++|++.++|+|+.+++ ++ ++++.|+++|+++++++++++........+ ..+ .
T Consensus 321 -g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~~~---~~~-~ 391 (498)
T COG3104 321 -GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-KQ---PSTPIKFALGLILAGLGFLILLLAGIWFGG---PSG-L 391 (498)
T ss_pred -ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-CC---CCcchHHHHHHHHHHHHHHHHHHHHHhhcC---CCC-C
Confidence 69999999999999999999999999999988765 33 699999999999999999999988643321 112 5
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
.|++|++++|+++++||++++|..++++++.+|+++++.+||+|.++.+.|+.+++.+..+.
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~ 453 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccc
Confidence 89999999999999999999999999999999999999999999999999999999998853
No 3
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=1.4e-37 Score=315.11 Aligned_cols=333 Identities=17% Similarity=0.217 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHH
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAA 96 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~ 96 (411)
..+++++.++.+|.|.++|+.+++++|+|+++|++ |+++|+++|+.+|+|++++|.++|++.+++||+++|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 34667788888999999999999999999987654 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccceeccC-CCCCcchh--HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh-hh
Q 015223 97 AMALGLFGVVSGTLYYRNKR-PQGSIFTP--IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF-LD 172 (411)
Q Consensus 97 ~~~l~~i~~~~~~~~~~~~~-p~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 172 (411)
.+++++++++.++|.+.+.. .+++|.++ ................+ ..... .+. .+.... +.
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~-~~~~~~~~~ 241 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP---ALITV-----------LFW-KEWSVYALI 241 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH---HHHHH-----------HHH-HHHHHHHHH
Confidence 99999999988887764421 11222211 10000000000000000 00000 000 000000 00
Q ss_pred hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhcccCCCCeeeCCccccc
Q 015223 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS-VQQGSAMNNKLTKNFHVPPASLQS 251 (411)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~-~~~~~~~~~~~g~g~~i~~~~l~~ 251 (411)
....... . +.....+ .. .+.+||||+..++++++..++||+.|+|+++.+ ++..+++|++++ |+++|++|+|+
T Consensus 242 ~~~~~~~-~--~~~~~~~-~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qs 315 (493)
T PRK15462 242 VATIIGL-G--VLAKIYR-KA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQS 315 (493)
T ss_pred HHHHHHH-H--HHHHHHH-hc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHh
Confidence 0000000 0 0000001 01 223679999999999999999999999998855 566688999998 99999999999
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 331 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 331 (411)
+||+.+++++|++.++|.++.||+ + +++.++|+++|+++.++|++++.+.... ..+++ .+|++|++..|++
T Consensus 316 lNp~~ii~l~P~~a~lw~~l~~~~-~---~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~-~~s~~wl~~~~~~ 386 (493)
T PRK15462 316 INAFAVMLCGVFLAWVVKESVAGN-R---TVRIWGKFALGLGLMSAGFCILTLSARW----SAMYG-HSSLPLMVLGLAV 386 (493)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC-CcCHHHHHHHHHH
Confidence 999999999999999998886543 2 2589999999999999999999876532 12223 5899999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH-hHHHHHHhHhhhhhcc
Q 015223 332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSY-SFGFYLSSLLVSFVNK 383 (411)
Q Consensus 332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~-~~G~~lg~~l~~~~~~ 383 (411)
+++||++.+|..+++++|.+|++++|++||.|++.. ++|+.+++.+.+.+..
T Consensus 387 ~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~ 439 (493)
T PRK15462 387 MGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999955 8999999999998854
No 4
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=1.1e-38 Score=316.05 Aligned_cols=340 Identities=29% Similarity=0.476 Sum_probs=230.1
Q ss_pred ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223 11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG 90 (411)
Q Consensus 11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~ 90 (411)
+++.+.+.+++++.++++|+|++|||++++++|||++++++ +|+++|+|||+++|+|+++++.+.+|+++++||+++
T Consensus 28 ~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~---~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 28 PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS---RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp ------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh---hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 45667899999999999999999999999999999987422 389999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccceecc-CCCCCcchh-HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccch
Q 015223 91 FGVSAAAMALGLFGVVSGTLYYRNK-RPQGSIFTP-IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRF 168 (411)
Q Consensus 91 F~i~~~~~~l~~i~~~~~~~~~~~~-~p~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
|+++.+++++++++|+.++++|+++ +|.+++..+ ...+...+.+++....+.....+.+..... ........
T Consensus 105 f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~- 178 (372)
T PF00854_consen 105 FGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVPKGSSWLDWALFQY-----SERSIFGI- 178 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-HHHHHHHHHHHHH-----CCCCCCCC-
T ss_pred hhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccccchHHHHHhhhhh-----hhhhhhhh-
Confidence 9999999999999999999999877 678888888 444555555544333221111111100000 00000000
Q ss_pred hhhhhhhhhhccCCCCCCCCcc-cccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCC-eeeCC
Q 015223 169 RFLDKACIKVEDGTNKKESPWR-LCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN-FHVPP 246 (411)
Q Consensus 169 ~~l~~a~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g-~~i~~ 246 (411)
.....+..+..+. ...+. .++++++++.|.+.+.++.+...+.|+..+.|..+....|..++|+.++ + +++|+
T Consensus 179 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~ 253 (372)
T PF00854_consen 179 IVFIRAAVIFFPE----IFFWALFCQVQRVEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPP 253 (372)
T ss_dssp CCHHHHHHHHCCC----HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------S
T ss_pred hhhccchhhhhhh----hhhcccCCccceeeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccc-ccccccc
Confidence 0000111111110 00111 1345667777777777777777777777777777777888888888787 7 89999
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
++++++|++.++++.|+++++++|+.++. + +++++.|+++|++++.+++++.+.+|..|......++ ..+.+|++
T Consensus 254 ~~l~~~n~i~iii~~pi~~~~~~p~~~~~-~---~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~-~~~~~~~~ 328 (372)
T PF00854_consen 254 AWLQSFNPIFIIIFIPILDRVVYPLLRRG-I---QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG-KVSPWWQV 328 (372)
T ss_dssp GGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHHHHHHHTTTHHHH---HH----T-T--THHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHhHHhhhc-c---cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-CCChhhHH
Confidence 99999999999999999999999999843 2 3689999999999999999999999987766555444 56779999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhH
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF 369 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 369 (411)
+.|++++++|.+.++...+.+++.+|+++.+.|+|+|+....+
T Consensus 329 ~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 329 PMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSAF 371 (372)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhcc
Confidence 9999999999999988889999999999999999999877643
No 5
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=8.8e-34 Score=290.21 Aligned_cols=331 Identities=16% Similarity=0.245 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHH
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAA 96 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~ 96 (411)
.+++++++++++|.|+++|+..++++|+|+++++| |+++|+++|+++|+|+++||.++|++.+++||+++|+++.+
T Consensus 106 ~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 106 DLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 34668999999999999999999999999876643 78899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhcccceecc--CCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh-hhh
Q 015223 97 AMALGLFGVVSGTLYYRNK--RPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF-LDK 173 (411)
Q Consensus 97 ~~~l~~i~~~~~~~~~~~~--~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 173 (411)
.++++++.+...++.+++. +|++++ .|..+.+.............. .. ..+...... +..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~l~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~ 244 (489)
T PRK10207 182 GLIIALLVYFACRGMVKDIGSEPDHKP-MSFSKLLLVLLGSVVMIFVCA----WL------------MHNVEVANLVLIV 244 (489)
T ss_pred HHHHHHHHHHHcchhhcccCCCCCccc-hhhhhHHHHHHHHHHHHHHHH----HH------------HhhhhHHHHHHHH
Confidence 8888888888887776543 233322 243332211111000000000 00 000000000 000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH-hhcccCCCCeeeCCccccch
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS-AMNNKLTKNFHVPPASLQSI 252 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~g~g~~i~~~~l~~i 252 (411)
...+... . ..++.++.++ .+|++.+....+++..++||+.|+|+.+.+..+.. ++|++.. |+.++++++|++
T Consensus 245 ~~~i~~~----~-f~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~ 317 (489)
T PRK10207 245 LSIVVTI----I-FFREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQAL 317 (489)
T ss_pred HHHHHHH----H-HHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhH
Confidence 0000000 0 0011112232 45677777778888899999999999776655553 5777776 899999999999
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 332 (411)
Q Consensus 253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 332 (411)
|++.++++.|+.++++.++.+|.. ++++.+|+++|+++.++|++.++..+.... ..++ .+|+||+++.|+++
T Consensus 318 n~~~iii~~pl~~~l~~rl~~r~~----~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~---~~~~-~~s~~~~i~~~~l~ 389 (489)
T PRK10207 318 NPFWVVVASPILAGIYTHLGSKGK----DLSMPMKFTLGMFLCSLGFLTAAAAGMWFA---DAQG-LTSPWFIVLVYLFQ 389 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCC-ccCHHHHHHHHHHH
Confidence 999999999999999988876642 268999999999999999988765542211 1112 47899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
|+||++.+++.++++++.+|++++|.+||+|++++++|+.+|+.+++.+..
T Consensus 390 g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~ 440 (489)
T PRK10207 390 SLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV 440 (489)
T ss_pred HHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999988753
No 6
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=2.5e-33 Score=293.04 Aligned_cols=252 Identities=27% Similarity=0.449 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-------cc
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-------GM 87 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-------g~ 87 (411)
....++++++++++|.|++|||.+++++|||++++++ +|+++|+|+|+++|+|+++++.+.+++++++ +|
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~---~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS---LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 3456889999999999999999999999999874432 3899999999999999999999999998543 69
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccc
Q 015223 88 DVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQR 167 (411)
Q Consensus 88 ~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+++|++++++|+++++++..++|+|++.+|++++..++.+++..+++++....+. + ..
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---------------------~-~~ 218 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---------------------H-WP 218 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc---------------------c-cc
Confidence 9999999999999999999999999877788888888888887777654211100 0 11
Q ss_pred hhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc
Q 015223 168 FRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA 247 (411)
Q Consensus 168 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~ 247 (411)
.+|+|.+.... .+++++|+|++++++++++..++||..|+|+.+.+..|+.+|+.+++ ++.+|++
T Consensus 219 ~~~ld~a~~~~--------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~ip~~ 283 (654)
T TIGR00926 219 LHWLDYAKDKH--------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEIQPD 283 (654)
T ss_pred hhHHHHhcccc--------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEecCHH
Confidence 35666553311 23567899999999999999999999999999999999999998888 8999999
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHh
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKR 309 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~ 309 (411)
+++++|++.++++.|+++..++|..+|++.+ +++++|+++|+++++++++++++.|..+
T Consensus 284 ~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 284 QMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887776432 6899999999999999999999988433
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=3.6e-33 Score=285.11 Aligned_cols=329 Identities=16% Similarity=0.220 Sum_probs=242.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.++++|.|+++|+.+++++|++++++++ +|+++++++|++.|+|+++||.+++++.+++||++.|+++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3567788999999999999999999999999876532 2788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchh----HHH-------HHHHHHHhhcccCCCCCccccccCCCCCCCCCCccc
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTP----IAQ-------VFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF 163 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~----~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (411)
++.+++++++++..++.+++.++++++..+ ..+ ++....+.... ..+. ..
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------~~ 238 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHV------------------VI 238 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-Hhcc------------------HH
Confidence 988888888888888777544333322211 000 00001110000 0000 00
Q ss_pred cccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhcccCCCCe
Q 015223 164 LTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFS-VQQGSAMNNKLTKNF 242 (411)
Q Consensus 164 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~-~~~~~~~~~~~g~g~ 242 (411)
..........+..+.... ...++ +.+. +++++...+++++++.++||++|+|+.+++ +++.+++|.+++ ++
T Consensus 239 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~ 310 (475)
T TIGR00924 239 ANILLMTVTLAVIIFFFR--LAFKP----RLDA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GM 310 (475)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHhc----cCCH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ce
Confidence 000000000011110000 00000 1122 345555677899999999999999998865 566777898887 89
Q ss_pred eeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccch
Q 015223 243 HVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSI 322 (411)
Q Consensus 243 ~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 322 (411)
++|+++++++|++.+++++|++++++.++.+|. + +++...|+++|+++.++|++.+++... ..+++. ++|+
T Consensus 311 ~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~-~---~~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~~~-~~s~ 381 (475)
T TIGR00924 311 SVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG-K---DPTTPLKFTLGMLFCGASFLTFAASIW----FADAGG-LTSP 381 (475)
T ss_pred EECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC-C---CCCcHHHHHHHHHHHHHHHHHHHHHHh----hcCCCC-ccCH
Confidence 999999999999999999999999887776652 2 257888999999999999999987632 122222 5899
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
||++++|+++|+||++.+|..++++++.+|+++||+++|++.+..++|+.+|+.+.....
T Consensus 382 ~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 382 WFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988663
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=4.4e-32 Score=278.74 Aligned_cols=321 Identities=13% Similarity=0.244 Sum_probs=240.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
.+.+++++.++++|.|+++|+..++++++|++++++ |+++++++|+++|+|+++||.++|++.+++||++.|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456778899999999999999999999999876543 6779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccceecc--CCCCCcchhHHHHHH-------HHHHhhcccCCCCCccccccCCCCCCCCCCcccccc
Q 015223 96 AAMALGLFGVVSGTLYYRNK--RPQGSIFTPIAQVFV-------AAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQ 166 (411)
Q Consensus 96 ~~~~l~~i~~~~~~~~~~~~--~p~~~~~~~~~~v~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
+.++++++.+++.++.++++ +|+++|. |..+.+. ......... .+. .. ...
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------~~-~~~ 247 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPI-NYRKLLLTIVGVVALIAIATWLL--HNQ----------------EI-ARM 247 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCcccc-chhhHHHHHHHHHHHHHHHHHHH--hcc----------------hH-HHH
Confidence 98888888887777666543 2332222 2222111 111110000 000 00 000
Q ss_pred chhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH-HhhcccCCCCeeeC
Q 015223 167 RFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQG-SAMNNKLTKNFHVP 245 (411)
Q Consensus 167 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~-~~~~~~~g~g~~i~ 245 (411)
...+......... ..+.+..++ +|+++.+..+++++..++||++|.|+++.+..|+ +++|+++. |+.+|
T Consensus 248 ~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~ 317 (500)
T PRK09584 248 ALGVVALGIVVIF--------GKEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVE 317 (500)
T ss_pred HHHHHHHHHHHHH--------HHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ceEEC
Confidence 0000000000000 000011222 4566777778888899999999999988776655 45777777 89999
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
+++++++|++.+++++|+.++++.++.+| +++.+|+++|+++.++|++.++.... .+++++ .+|.+|+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~~~-~vs~~~~ 385 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCSGAFLVLPLGAK----FANDAG-IVSVNWL 385 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH----hcCCCC-ccCHHHH
Confidence 99999999999999999999988776554 36789999999999999999887653 222223 6899999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+++|+++|+||++++|..++++++.+|+++||+++|+|+++.++|+.+++.+.+.+.
T Consensus 386 ~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~ 442 (500)
T PRK09584 386 IASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMA 442 (500)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998764
No 9
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.58 E-value=7.4e-13 Score=129.26 Aligned_cols=267 Identities=10% Similarity=0.044 Sum_probs=164.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+.+++.+...|...+++.|.+++++ |+++++++..+.++|.++||.+++++.++.+|++.|++
T Consensus 90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367888999999999999999999999999998643 79999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcccceeccCC-CCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRP-QGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD 172 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (411)
.++..+++.+.....+. +++++ ++++... + . ..+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------------------~------------------~----~~~~~~ 201 (365)
T TIGR00900 164 DAVGFAISALLIVSVRI--PELAASEIQALSN------------------A------------------V----LRDTRE 201 (365)
T ss_pred HHHHHHHHHHHHHhccc--ccCCCccccccch------------------h------------------H----HHHHHh
Confidence 87765555444332211 11000 0000000 0 0 000000
Q ss_pred hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHh----hhhHHHHHHHHhhcccCCCCeeeCCcc
Q 015223 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILA----QLQTFSVQQGSAMNNKLTKNFHVPPAS 248 (411)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~----q~~s~~~~~~~~~~~~~g~g~~i~~~~ 248 (411)
..+. -.+++ .+.. +......+...+. ...+.+..+. .+.. ....+.
T Consensus 202 ~~~~-------------------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~ 251 (365)
T TIGR00900 202 GIKF-------------------VLKNP-LLRT---LLLLALLFNLVFAPAIVALFPYVQSKY----LGRG---STHYGW 251 (365)
T ss_pred HHHH-------------------HHcCc-HHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH----hCCc---hHHHHH
Confidence 0000 00111 1111 1111222222221 1112222211 1111 011233
Q ss_pred ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
+.....+..++..++.+++.++.. ..+.+..+.++.+++++...... + +.+.+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~ 307 (365)
T TIGR00900 252 VLAAFGLGALLGALLLGLLGRYFK-----------RMALMTGAIFVIGLAILVVGLTP------------P-NFPLFLVL 307 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----------hhHHHHHHHHHHHHHHHHHHhhc------------h-hHHHHHHH
Confidence 444455555666666665443221 12224455666666666555432 1 35566777
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
.++.+++.....+...+++.+..|++.||.++|+++....+|..+++.+.+.+.
T Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 308 WFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888889999999999999999999999999999999988764
No 10
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.57 E-value=4.8e-13 Score=137.73 Aligned_cols=315 Identities=12% Similarity=0.040 Sum_probs=176.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.++++|.|+..|...+.+.+.+.+++ +|.++++++....++|..+||.+++++.++.|||+.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 467888999999999999999999888888875433 279999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchh--hh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFR--FL 171 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l 171 (411)
..+..++.++......+. +++++++..|..+.+..........+..... ...+ ........ ..
T Consensus 167 ~~~~~~~~~~l~~~~l~~---~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~-~~~~-----------~~~~~~~~~~~~ 231 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPR---QAGRRDQPLNLGHALMLIVAILLLVYSAKTA-LKGF-----------LSLWVTSLTLLT 231 (495)
T ss_pred HHHHHHHHHHHHHHhCCC---CCCCCCCCCChHhHHHHHHHHHHHHHHHHhc-cccC-----------CchHHHHHHHHH
Confidence 887666555444333222 1112222234333222111110000000000 0000 00000000 00
Q ss_pred hhhhhhhcc--CC--CCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc
Q 015223 172 DKACIKVED--GT--NKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA 247 (411)
Q Consensus 172 ~~a~~~~~~--~~--~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~ 247 (411)
.......+. +. ..-..+++++ +++......+..+.....+ ..+....+.+.++..+.+. ...+
T Consensus 232 ~~~~l~~f~~~e~~~~~p~~~~~lf-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lq~v~g~s~-------~~ag 298 (495)
T PRK14995 232 GALLLGLFIRTQLAASRPMIDMRLF-----THRIILSGVVMAMTAMITL-VGFELLMAQELQFVHGLSP-------LEAG 298 (495)
T ss_pred HHHHHHHHHHHHhcCCCCCcCHHHh-----CCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCH-------HHHH
Confidence 000000000 00 0000011111 1111111111111111111 1111112233333322221 1122
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
.+.....+...+..|+.+++.++..+| +-+..|+++.+++++.+..... ..+.++..+
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~~~~~l~~~~~-----------~~~~~~~~~ 356 (495)
T PRK14995 299 MFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSALSFYGLAMTDF-----------STQQWQAWG 356 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHHhcC-----------CCchHHHHH
Confidence 233334466677788888877544322 2246688888777776655421 134455566
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
..++.|+|..+..++....+.+.+|++.+|.+++++++.+.+|+.+|..+.+.+-.
T Consensus 357 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 357 LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999988777889999999999999999999999999999988887643
No 11
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.55 E-value=3e-13 Score=138.16 Aligned_cols=318 Identities=9% Similarity=0.002 Sum_probs=177.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+...+++++.++++|.|...|...+++.|.+++++ |++++++++...++|..+||.+++++.++++|++.|++
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 456788899999999999999999999999998543 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhh--
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFL-- 171 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-- 171 (411)
.++..++..+......++ .+++.....|..+....+.................| ..........
T Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 227 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPR---DKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGW-----------FDSNEILILSIT 227 (485)
T ss_pred hhHHHHHHHHHHHHHcCC---ccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC-----------CCchHHHHHHHH
Confidence 876655555444333222 112222223333322222111100000000000000 0000000000
Q ss_pred hhhhhhhcc--CCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccc
Q 015223 172 DKACIKVED--GTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASL 249 (411)
Q Consensus 172 ~~a~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l 249 (411)
......... .. ....+. ...+-..+++.....+..+.....++.... ..+.|.++..+++. ...+.+
T Consensus 228 ~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~g~s~-------~~~g~~ 296 (485)
T TIGR00711 228 GLVAIIAFVVWEL-TDDNPL--VDLRLFKYRNFTIGCVYMSLLGLGLYGSFY-LLPLYLQQVLGYTA-------LQAGLH 296 (485)
T ss_pred HHHHHHHHHHHHH-cCCCCc--cCHHHHcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCH-------HHHHHH
Confidence 000000000 00 000000 000000111111111111111111111111 11223222111110 112344
Q ss_pred cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223 250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF 329 (411)
Q Consensus 250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 329 (411)
.....+..++..|+.+++.++..+| +.+.+|..+.+++++++.... .+ ..+.++++...
T Consensus 297 ~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~ 355 (485)
T TIGR00711 297 ILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWRAFTF------TP----DTPFLAIALPQ 355 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHHhccC------CC----CCCHHHHHHHH
Confidence 5556677778888888876544332 235667777777777665321 01 24566666778
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++.++|..+..++....+.+..|++.+|.++|+.++.+.+|+.+|+.+.+.+-.
T Consensus 356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887776788888999999999999999999999999988886543
No 12
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.52 E-value=4.1e-13 Score=130.52 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.+.++|.+...|...+++.|.+++++ |.+++++.+...++|..+||.+++++.++++|++.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 44588999999999999999999999999999855 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..++..+......+ ++++++.... +.+ ........+.+
T Consensus 158 ~~~~~~~~il~~~~~~---~~~~~~~~~~-----------------~~~------------------~~~~~~~~~~~-- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLP---EPPPPRERES-----------------PKE------------------SESKKPKPLKP-- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC------STTTT--S-----------------STT------------------TT--HHHCCCH--
T ss_pred cchhhhhhhhHhhhhh---hccccccccc-----------------ccc------------------ccccccccccc--
Confidence 8877776554322221 1111110000 000 00000000000
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL---QTFSVQQGSAMNNKLTKNFHVPPASLQS 251 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~g~g~~i~~~~l~~ 251 (411)
.+ +...+.+.++.+ +.....+...+... .+.|..+..+.+ + ....+.+..
T Consensus 198 -------------~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~---~~~~~~~~~ 250 (352)
T PF07690_consen 198 -------------GF-----KSLFKNPVLWIL---LIAFFLFFFVFSGFSFFLPLYLQEVLGFS---G---PSQAGLLFS 250 (352)
T ss_dssp --------------C-----THHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHCC---T---HHHHHHHHH
T ss_pred -------------cc-----ccccccchhhhh---hhhhhHHHHHHHHhhcccchhhhhccCCC---H---HHHHHHHHH
Confidence 01 111222222111 11122222222222 122212222111 0 011233345
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 331 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 331 (411)
+..+..++..++.+++.+|+.+| ++.........++.+.+..... ..+..|.....++
T Consensus 251 ~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 308 (352)
T PF07690_consen 251 IFGIVGIIGSLLAGRLSDRFGRR-----------RRLLIAILLLILGALGLLLLPF-----------SSSPVWLIIALFL 308 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHCCSHH-----------HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHH
Confidence 55555666677777776543322 2233444444444444433321 1245677778889
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHh
Q 015223 332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 375 (411)
Q Consensus 332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~ 375 (411)
.+++..+..+...+++.+.+|++.+|.++|+.+...++|..+||
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999986
No 13
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.47 E-value=5.9e-12 Score=126.13 Aligned_cols=259 Identities=10% Similarity=0.102 Sum_probs=160.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++++.+++.|...|...+++.|.+++++ |++++++.+...++|..+||.+++++. .++|++.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 56778889999999999999999999999998644 799999999999999999999999998 68999999988
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..++..+......++ .+++.+ ..+ .. .++
T Consensus 171 ~~~~~~~~i~~~~~~~~---~~~~~~-~~~-------------------------------------~~----~~~---- 201 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPA---YKLSTV-RTP-------------------------------------VR----EGM---- 201 (400)
T ss_pred HHHHHHHHHHHHHhCCc---cccccc-chh-------------------------------------hH----HHH----
Confidence 76655544333322111 000000 000 00 000
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccCCCCeeeCCccccc
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQ---TFSVQQGSAMNNKLTKNFHVPPASLQS 251 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~---s~~~~~~~~~~~~~g~g~~i~~~~l~~ 251 (411)
. +...+++. ..... ....++..+.+.. +.+.+ +. + +.....+.+..
T Consensus 202 ~-------------------~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~p~~~~-~~------~-~~~~~~g~l~~ 250 (400)
T PRK11646 202 T-------------------RVLRDKRF-VTYVL---TLTGYYMLAVQVMLMLPIMVN-DI------A-GSPSAVKWMYA 250 (400)
T ss_pred H-------------------HHHcCchH-HHHHH---HHHHHHHHHHHHHHhhhhhHH-hh------c-CCchHHHHHHH
Confidence 0 00012211 11111 1112222222221 12221 11 1 10111233444
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 331 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 331 (411)
++.+..+.......++.+ +|. +..+++..+.++.+++++.+...+ +.++++....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~---~r~-------~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~~l 306 (400)
T PRK11646 251 IEACLSLTLLYPIARWSE---KRF-------RLEHRLMAGLLIMSLSMFPIGMVS--------------NLQQLFTLICL 306 (400)
T ss_pred HHHHHHHHHHHHHHHHHH---Hhc-------chhHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHH
Confidence 454443333322333332 221 233456777777777776665432 34445555578
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
.++|+.+..|...+.+.+.+|++.+|.++|++++..++|+.+|+.+.+.+...
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 89999988888889999999999999999999999999999999999988654
No 14
>PRK03545 putative arabinose transporter; Provisional
Probab=99.46 E-value=1.6e-11 Score=122.20 Aligned_cols=260 Identities=9% Similarity=0.003 Sum_probs=157.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+++++.+...|...+++.|.+++++ |.++++++..+.++|..+||.+++++.+++|||+.|++
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 456788899999999999999999999999998644 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++..++..+..... +++ +|++++ .+ .. +.
T Consensus 169 ~~~~~~l~~~~~~~~---~~~-~~~~~~-~~-------------------------------------~~-----~~--- 198 (390)
T PRK03545 169 IGGGALITLLLLIKL---LPL-LPSEHS-GS-------------------------------------LK-----SL--- 198 (390)
T ss_pred HHHHHHHHHHHHHHh---CCC-CCCCCc-ch-------------------------------------HH-----HH---
Confidence 886655444333322 111 111100 00 00 00
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP 253 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in 253 (411)
. +-..+++....++..+.....++..+.... .+.....+++. -..+.+..+.
T Consensus 199 -~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~s~-------~~~~~~~~~~ 250 (390)
T PRK03545 199 -P-------------------LLFRRPALVSLYLLTVVVVTAHFTAYSYIE-PFVQQVAGLSE-------NFATLLLLLF 250 (390)
T ss_pred -H-------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCc-------cHHHHHHHHH
Confidence 0 000111111111111111222222221111 12111111111 1123334444
Q ss_pred HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223 254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG 333 (411)
Q Consensus 254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 333 (411)
.+..++..++.+++.+ |. . .+++..+..+.+++........ .+.+++++..++.+
T Consensus 251 ~~~~~~g~~~~g~l~d----r~-------~-~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~l~g 305 (390)
T PRK03545 251 GGAGIIGSVLFSRLGN----RH-------P-SGFLLIAIALLLVCLLLLLPAA-------------NSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHHHHHHHHHHhh----cc-------c-hhHHHHHHHHHHHHHHHHHHHh-------------chHHHHHHHHHHHH
Confidence 4555666666555443 22 1 2335556666555554443321 24556667778899
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++.....+...+.+.+..| +.++.++|+++....+|..+|+.+.+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~ 354 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL 354 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988877777777888777 578999999999899999999999887654
No 15
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.44 E-value=2.8e-11 Score=118.81 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.+.++|.|...|...+++.|.+++++ |++++++.....++|.++++.+++++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 67888999999999999999999999999998533 799999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 015223 95 AAAMALGLFGV 105 (411)
Q Consensus 95 ~~~~~l~~i~~ 105 (411)
++..++..+..
T Consensus 155 ~~~~~~~~~~~ 165 (399)
T TIGR00893 155 GVLGIIWGVLW 165 (399)
T ss_pred HHHHHHHHHHh
Confidence 76655444443
No 16
>PRK10504 putative transporter; Provisional
Probab=99.44 E-value=2e-11 Score=124.55 Aligned_cols=312 Identities=6% Similarity=-0.026 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.++++++++++|.|...|...+.+.|.+++++ |.+++++.....++|..+||.+++++.++.||++.|.++
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 45677889999999999999999999999987533 788999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
.+...++.+......++. +..+...|..+...............+ +.+. .+ ............+
T Consensus 171 ~~~~~l~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~---~~~~~~~~~~~~~ 234 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNY----TMQTRRFDLSGFLLLAVGMATLTLALD-----GSKG----LG---LSPLAIAGLVAVG 234 (471)
T ss_pred HHHHHHHHHHHHHhCCCc----cccCCCCChHHHHHHHHHHHHHHHHHh-----cCCc----CC---cchHHHHHHHHHH
Confidence 876655555444332221 111222333322222111100000000 0000 00 0000000000000
Q ss_pred hhhh-ccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhh---hhHHHHHHHHhhcccCCCCeeeCCcccc
Q 015223 175 CIKV-EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQ---LQTFSVQQGSAMNNKLTKNFHVPPASLQ 250 (411)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q---~~s~~~~~~~~~~~~~g~g~~i~~~~l~ 250 (411)
.... ................+-..++ ... ..+......+..+.. ..+.|.+...+.+. ...+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~g~~~ 303 (471)
T PRK10504 235 VVALLLYLLHARNNNRALFSLKLFRTR-TFS---LGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSP-------FHAGLMM 303 (471)
T ss_pred HHHHHHHHHHHhcCCCCccCHHHhccc-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-------HHHHHHH
Confidence 0000 0000000000000000000111 111 122222222222222 12223222111111 1112222
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
....+..++..++.+++.+++.+| +-+..|..+.+++.+++.... . ..+.+++....+
T Consensus 304 ~~~~~~~~~~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~ 361 (471)
T PRK10504 304 IPMVLGSMGMKRIVVQVVNRFGYR-----------RVLVATTLGLALVSLLFMLVA--------L---LGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHHHHHhcc--------c---cccHHHHHHHHH
Confidence 333344455556666665444322 224557776666665555432 0 123334455678
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+.+++..+..+.....+.+..|++.+|.++|++++.+.+|+.+|+.+.+.+
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998888878999999999999999999999999999999888765
No 17
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.41 E-value=5.8e-11 Score=119.35 Aligned_cols=265 Identities=9% Similarity=0.001 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++.+++.+++.|...|...+++.|.+++++ |.++.++.++..++|..+||.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 45677788888999999889999999999987643 788999999999999999999999999888999999988
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..+++.+..... ++.+|++.+. .+ ... +..+..
T Consensus 183 ~~~~~~~~~~~~~l----~~~~~~~~~~-------------------~~-----------------~~~-----~~~~~~ 217 (417)
T PRK10489 183 AAGTFITLLPLLRL----PALPPPPQPR-------------------EH-----------------PLR-----SLLAGF 217 (417)
T ss_pred HHHHHHHHHHHHhC----CCCCCCCccc-------------------cc-----------------chH-----HHHHHH
Confidence 77666554443322 1111110000 00 000 000000
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhH
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY 254 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~ 254 (411)
+ .+...+.+...+........+. .+....+.|..+..+++. -..+.+.....
T Consensus 218 ~--------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~-------~~~g~~~~~~~ 269 (417)
T PRK10489 218 R--------------------FLLASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGA-------AQIGLLYAAVP 269 (417)
T ss_pred H--------------------HHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCCh-------hHhHHHHHHHH
Confidence 0 0000111111111111111111 111111122221111110 01233444555
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
+..++...+.+++. +|. +..+.+..+.++.+++++.+... .+.+......++.++
T Consensus 270 ~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 270 LGAALGALTSGWLA----HSA-------RPGLLMLLSTLGSFLAVGLFGLM--------------PMWILAVLCLALFGY 324 (417)
T ss_pred HHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHHHHHHHHHHcc--------------chHHHHHHHHHHHHH
Confidence 55555555555433 221 12233456666666666555432 234445566788888
Q ss_pred HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+.....+...+++.+..|++.||.++|+++....+|+.+|+.+.+.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 8887777777888999999999999999999999999999998887654
No 18
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.40 E-value=7.3e-11 Score=114.12 Aligned_cols=241 Identities=16% Similarity=0.121 Sum_probs=171.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+.+++.+...|...++..|.+++++ |.+++++.+...++|..+++.+++++.++.+|++.|.+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 356778899999999999999999999999998744 79999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++..+++.+...... +..
T Consensus 159 ~~~~~~~~~~~~~~~~-------------~~~------------------------------------------------ 177 (352)
T cd06174 159 LAILGLLLALLLLFLL-------------RLL------------------------------------------------ 177 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------HHH------------------------------------------------
Confidence 8877666554443221 000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVP-IFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI 252 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i 252 (411)
..... .+.....+.. +.+..+.+..+.. +.. ....+.+...
T Consensus 178 ------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~---~~~~~~~~~~ 219 (352)
T cd06174 178 ------------------------------LLLALAFFLLSFGYYG-LLTYLPLYLQEVL----GLS---AAEAGLLLSL 219 (352)
T ss_pred ------------------------------HHHHHHHHHHHhHHHH-HHHHHHHHHHHhc----CCC---HHHHHHHHHH
Confidence 00000 0000001111 1111111111110 111 1123445566
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 332 (411)
Q Consensus 253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 332 (411)
..+..++..++.+++.+|..+|+ + .+..+.++..++++.....+ +.+++...+++.
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~ 275 (352)
T cd06174 220 FGLGGILGALLGGLLSDRLGRRR-------L---LLLIGLLLAALGLLLLALAP--------------SLALLLVALLLL 275 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------H---HHHHHHHHHHHHHHHHHHhc--------------cHHHHHHHHHHH
Confidence 66777777888887765554331 0 35678888888877776542 366778889999
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++++....+...+++.+..|++.|+..+|+++....+|+.+++.+.+.+..
T Consensus 276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998888999999999999999999999999999999999988754
No 19
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.39 E-value=2e-11 Score=137.77 Aligned_cols=279 Identities=9% Similarity=-0.008 Sum_probs=163.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++++++++.+.+.|...+++.|.+++++ |..+.++..++.++|.++||.++|++.+..+|++.|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 457889999999999999999999999999999755 79999999999999999999999999999999999954
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++..+++.+..... ++.+++..+.+. .. ... . ...+.
T Consensus 180 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~------------------~~---------------~~~-~----~~~~~ 217 (1140)
T PRK06814 180 LMGIAVLGWLASLFI----PKTGNAAPDLKI------------------DR---------------NII-R----STITL 217 (1140)
T ss_pred HHHHHHHHHHHHhhC----CCCCCCCCCCee------------------cc---------------chH-H----HHHHH
Confidence 444333332222221 111111000000 00 000 0 00000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhcccCCCCeeeCCcccc
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL---QTFSVQQGSAMNNKLTKNFHVPPASLQ 250 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~g~g~~i~~~~l~ 250 (411)
.. .+...+.++.+ .+....++.+.... .+.|..+. .+.+ ..-.+.+.
T Consensus 218 ~~--------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~----~g~~---~~~~g~~~ 267 (1140)
T PRK06814 218 LK--------------------YAKADKRIWLA---ILGISWFWLVGAVVLSQLPLLAKET----LGGD---ENVATLFL 267 (1140)
T ss_pred HH--------------------HHhcCchHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH----cCCc---hHHHHHHH
Confidence 00 00011111121 11112222222211 12332221 1111 01134456
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccC-------CCccchH
Q 015223 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDS-------GKTLSIF 323 (411)
Q Consensus 251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~~s~~ 323 (411)
+...+..++...+.+++..+..+ .+.+..|.++.+++.+.+.+... ........ -...+.+
T Consensus 268 ~~~~~g~~ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKLSEGRIT-----------LLYVPIGALLMGLFGLDLAFASS-SVPAEPAQLKSILVFLSKRHGW 335 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhCCcee-----------eeeehHHHHHHHHHHHHHHhccc-ccccccccccchhhhhcccccH
Confidence 66667777777777766422111 12234454444444443332100 00000000 0013556
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 324 SITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 324 ~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
++++.+++.+++..+..++..+++.+.+|++++|.++|++++...+|+.+|+.+.+.+.
T Consensus 336 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 336 RILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999889999999999999999999999999999999998888764
No 20
>PRK12382 putative transporter; Provisional
Probab=99.39 E-value=1.2e-10 Score=115.93 Aligned_cols=253 Identities=9% Similarity=0.029 Sum_probs=156.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+...+++++.++++|.+...|...+.+.|.+++++ |.++++++..+.++|..+||.+++++.+++||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 456778899999999999999999999999987644 79999999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
..+..+ +.+... ++.++.+++++. .. +..
T Consensus 184 ~~~~~~---~~~~~~-~~~~~~~~~~~~---------------------~~------------------------~~~-- 212 (392)
T PRK12382 184 TMVLPL---LAWAFN-GTVRKVPAHAGE---------------------RP------------------------SLW-- 212 (392)
T ss_pred HHHHHH---HHHHHH-HhccCCCCCccc---------------------Cc------------------------hHH--
Confidence 554322 222221 111111110000 00 000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI 252 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i 252 (411)
+..|.+... +..+.....+....... +.+..+ . ++. ........
T Consensus 213 ------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-----~----~~~-~~~~~~~~ 257 (392)
T PRK12382 213 ------------------------SVVGLIWKPGLGLALQGVGFAVIGTFV-SLYFAS-----K----GWA-MAGFTLTA 257 (392)
T ss_pred ------------------------HHHHHHHHhHHHHHHHHHHHhHHHHHH-HHHHHh-----c----CCc-hhHHHHHH
Confidence 000000000 01111111111111111 122211 1 111 11222334
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 332 (411)
Q Consensus 253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 332 (411)
..+..++..++.+++.++..+| +.+..+..+.+++++..... .+.++..+..++.
T Consensus 258 ~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~ 312 (392)
T PRK12382 258 FGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLWLA--------------PTAWVALAGAALT 312 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHH
Confidence 4455566677777766544332 22456777777776655542 1345566677899
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++++....+.....+.+..|++.||.++|+++....+|+.+|+.+.+.+..
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~ 363 (392)
T PRK12382 313 GAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT 363 (392)
T ss_pred HHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777788899999999999999999999999999998887644
No 21
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.39 E-value=9.5e-11 Score=117.07 Aligned_cols=268 Identities=13% Similarity=0.010 Sum_probs=158.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+.+.+.+.+++.|...|...+++.|.+++++ |++++++++...++|..+++.+++++.+..+|++.|++
T Consensus 101 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 356777889999999999999999999999997644 79999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++..++..+...... ++ +|+..+. + . ..+. . . .....
T Consensus 175 ~~~~~~~~~~~~~~~l---~~-~~~~~~~-------------~--~-~~~~-----------------~-~----~~~~~ 212 (406)
T PRK11551 175 GGVGPLLLVPLLMRWL---PE-SRAFAQA-------------A--G-AGKQ-----------------R-A----PVLRA 212 (406)
T ss_pred HHHHHHHHHHHHHHhC---CC-ChhHHhc-------------c--C-cchh-----------------h-h----hhHHH
Confidence 7755444433332211 11 1110000 0 0 0000 0 0 00000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISV-VPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI 252 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i 252 (411)
.++. .+.+ +...+ +..+.....++...... +.+.. . .+.. .-..+.+...
T Consensus 213 -----------------~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~~-~----~g~s---~~~~~~~~~~ 263 (406)
T PRK11551 213 -----------------LFGE--GRAT-ATLLLWISYFFTLIVLYFLLNWL-PSLLV-G----QGLS---RSQAGLVQIA 263 (406)
T ss_pred -----------------Hhhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHH-h----CCCC---hhhhhHHHHH
Confidence 0000 0111 11111 11111122222222211 12211 1 1111 0112334444
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 332 (411)
Q Consensus 253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 332 (411)
..+..++...+.+++.+++.+|+ .+..+.+..+++++..... .+.+++....++.
T Consensus 264 ~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 318 (406)
T PRK11551 264 FNIGGALGSLLIGALMDRLRPRR-----------VVLLIYAGILASLAALAAA--------------PSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHhc--------------CcHHHHHHHHHHH
Confidence 45556666777777766554331 1233444444444433322 2344555566777
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+++.....+...+++.+..|++.||..+|+.+....+|..+|+.+.+.+..
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~ 369 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA 369 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence 887777777777889999999999999999999999999999999988754
No 22
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.38 E-value=1e-10 Score=116.32 Aligned_cols=263 Identities=13% Similarity=0.067 Sum_probs=159.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
..+.+.+++.+.+++.+.+...|...++..+. + + +|++.++......++|..++|.+++++.+++||+..|+
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~--~-----~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW-Q--K-----QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH-H--H-----HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 34577888888889999988999988886542 2 1 15778999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223 93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD 172 (411)
Q Consensus 93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (411)
+......+.++.+ ...+ +.+|++++ . +.. ... ..++.
T Consensus 163 ~~~~~~~~~~~~~-~~~~---~~~~~~~~-~-------------------~~~----------------~~~--~~~~~- 199 (382)
T TIGR00902 163 ILTAGLAFMLIGF-LIKP---TIPPKDAI-P-------------------EDE----------------SQG--DSAFI- 199 (382)
T ss_pred HHHHHHHHHHHHH-HcCC---CCCCCccc-c-------------------ccc----------------ccc--chhHH-
Confidence 8664432222222 2111 10111100 0 000 000 00000
Q ss_pred hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccch
Q 015223 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSI 252 (411)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~i 252 (411)
++ .+++ ++..+ .+.....+..+.+..+.....-+ +.... ....+.+..+
T Consensus 200 -----------------~~-----l~~~-~~~~~---l~~~~l~~~~~~~~~~~~~~~l~--~~g~s---~~~~g~l~~~ 248 (382)
T TIGR00902 200 -----------------AL-----LKNP-MNLRF---LAAVCLIQGAHAAYYGFSAIYWQ--AAGIS---ASATGLLWGI 248 (382)
T ss_pred -----------------HH-----HcCh-HHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HCCCC---HhHHHHHHHH
Confidence 00 0122 22222 12222223333333222111111 11111 0112334555
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 332 (411)
Q Consensus 253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 332 (411)
..+..++..++.+++. +|. ++.+-+.+|.++.++.++..+..+ +++++++..+++
T Consensus 249 ~~~~~i~~~~~~~~l~----~r~-------g~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~q~l~ 303 (382)
T TIGR00902 249 GVLAEIIIFAFSNKLF----QNC-------SARDLLLISAIACVGRWAIIGAIE--------------AFPLIFLLQILH 303 (382)
T ss_pred HHHHHHHHHHHhHHHH----hhC-------CHHHHHHHHHHHHHHHHHHHHhHh--------------hHHHHHHHHHHH
Confidence 5566666666655554 332 333446788888888888776643 566667677999
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH-HHHhHHHHHHhHhhhhhcc
Q 015223 333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~-l~~~~G~~lg~~l~~~~~~ 383 (411)
++...+..+....++.+. |++.++.++|+++ +..++|..+|+.+++.+..
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999988 9999999999976 5678999999999887754
No 23
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.38 E-value=2.6e-10 Score=113.77 Aligned_cols=251 Identities=12% Similarity=0.032 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+...+++.+.++++|.+...|...+.+.|.+++++ |.++++++..+.++|..+|+.+++++.+++||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 35578889999999999999999999999997654 788999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
.+..++. ++..++ .++.++++++ . . ++
T Consensus 185 ~~~~~~~---~~~~~~-~~~~~~~~~~---------------------~------------------~------~~---- 211 (399)
T PRK05122 185 MLLALLG---LLLARP-RPAVPPVKGE---------------------R------------------L------PF---- 211 (399)
T ss_pred HHHHHHH---HHHHhc-CCCCCCCCcc---------------------c------------------h------hH----
Confidence 6543322 222111 1110000000 0 0 00
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHH-HHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIF-ACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP 253 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~-~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in 253 (411)
.+..|+.......+ +....+....... ..+.. . . +.. ..+......
T Consensus 212 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~----~----~~~-~~~~~~~~~ 258 (399)
T PRK05122 212 ----------------------RRVLGRVWPYGMGLALASIGFGTIATFI-TLYYA-A----R----GWD-GAALALTLF 258 (399)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-H----c----ccc-cchHHHHHH
Confidence 00011111111111 1111111111111 12211 1 1 110 112223334
Q ss_pred HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223 254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG 333 (411)
Q Consensus 254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 333 (411)
.+..++..++.+++.++..+ .+.+..+.++.+++++..... .+.+++++..++.+
T Consensus 259 ~~~~~~~~~~~g~l~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~G 313 (399)
T PRK05122 259 GVAFVGARLLFGNLINRLGG-----------LRVAIVSLLVEILGLLLLWLA--------------PSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHH
Confidence 44555555666665543322 233456667777776665543 24555667778999
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
++.....+.....+.+..|++.||.++|+++....+|..+++.+.+.+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 362 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA 362 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888777677889999999999999999999999988887777654
No 24
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.36 E-value=1.9e-10 Score=114.25 Aligned_cols=259 Identities=10% Similarity=0.026 Sum_probs=153.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++.+.+++++.+...|...++..|..+ + |+++++...+..++|..+||.+++++.+++||+..|++
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--Q------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--h------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 456777788888999999999998888887621 1 56678888888899999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++...+..+... .. ++.+|++++.+ .. .+. ..++
T Consensus 164 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~------------------~~------------------~~~--~~~~--- 198 (382)
T PRK11128 164 LTAGVASMLLGQL-LR---PTIMPQGESRQ------------------QE------------------SAG--WPAW--- 198 (382)
T ss_pred HHHHHHHHHHHHH-cc---CCCCCcccccc------------------cc------------------ccc--cchH---
Confidence 7754443332222 11 11111110000 00 000 0000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccCCCCeeeCCcccc
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQ---TFSVQQGSAMNNKLTKNFHVPPASLQ 250 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~---s~~~~~~~~~~~~~g~g~~i~~~~l~ 250 (411)
.+....|.++.++. ........+.+.. +.|.. +.+.. .-..+.+.
T Consensus 199 ---------------------~~i~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~-----~~g~s---~~~~g~~~ 246 (382)
T PRK11128 199 ---------------------KALLKEPTVWRFLL---CVSLLQGSHAAYYGFSAIYWQ-----AAGYS---ASTIGYLW 246 (382)
T ss_pred ---------------------HHHHcChhHHHHHH---HHHHHHHHhHhHHHHHHHHHH-----HCCCC---HhHHHHHH
Confidence 00011112222211 1111122222221 12221 11111 01134445
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
.++.+..++...+.+++.++.. ..+.+..+.++.+++++.+...+ +.+++++..+
T Consensus 247 ~~~~~~~~~~~~~~g~l~~r~~-----------~~~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 301 (382)
T PRK11128 247 SLGVVAEVLIFAFSNRLFRRWS-----------ARDLLLLSAICGVVRWGLMGSTT--------------ALPWLIVIQI 301 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHHH
Confidence 5666666666666666654332 23335677777777776665432 5666777889
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH-HHHhHHHHHHhHhhhhhcc
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~-l~~~~G~~lg~~l~~~~~~ 383 (411)
+.++++.+..+....++.+. |++.++.+++..+ +..++|..+|+.+++.+..
T Consensus 302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888776 5666788888876 6667888888888887644
No 25
>TIGR00895 2A0115 benzoate transport.
Probab=99.35 E-value=4.3e-10 Score=111.04 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.+.+++.|...|...+++.|.+++++ |.++++++..+.++|..+++.+++++.++.+|++.|++.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 46678889999999999999999999999997543 789999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 015223 95 AAAMALGLF 103 (411)
Q Consensus 95 ~~~~~l~~i 103 (411)
++...+..+
T Consensus 178 ~~~~~~~~~ 186 (398)
T TIGR00895 178 GIAPLLLLL 186 (398)
T ss_pred hhHHHHHHH
Confidence 644444433
No 26
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.35 E-value=3.3e-10 Score=113.33 Aligned_cols=271 Identities=13% Similarity=0.019 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++.+++++++.+...|...+.+.|.+++++ |.+++++.+...++|..+||.+++++.++.+|++.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 45678889999999999999999999999997643 677888888888999999999999999999999999987
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..+++.+......+ +. ++.++.. .+ . .+..+..
T Consensus 174 ~~~~~~~~~~~~~~~~---~~-~~~~~~~-------------------~~-----------------~-----~~~~~~~ 208 (406)
T PRK15402 174 AALAALSFFGLWRAMP---ET-AGRVGEK-------------------LS-----------------L-----KELGRDY 208 (406)
T ss_pred HHHHHHHHHHHHHhCC---CC-Ccccccc-------------------cc-----------------H-----HHHHHHH
Confidence 7666555443332211 11 1000000 00 0 0000000
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhH
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY 254 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~ 254 (411)
+.. ..++ ++......+.........+....+.+..+.. ... . ...+.....-.
T Consensus 209 ~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----g~~-~--~~~g~~~~~~~ 261 (406)
T PRK15402 209 KLV-------------------LKNR-RFVAGALALGLVSLPLLAWIALSPVILISGE----QLS-S--YEYGLLQVPVF 261 (406)
T ss_pred HHH-------------------HcCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----CCC-H--HHHHHHHHHHH
Confidence 000 0111 1111111111110001111111122222111 111 0 00112222222
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
+..++..++.+++.++..+ .+.+.+|.++.+++.+........ . ..+.+|++...++.++
T Consensus 262 ~~~~~g~~~~g~l~~r~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~------~---~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 262 GALIAGNLTLARLTSRRPL-----------RSLIRMGLWPMVAGLLLAALATVI------S---SHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHc------c---cccHHHHHHHHHHHHH
Confidence 3344555555655443322 233566777777777776654310 0 2357778888899999
Q ss_pred HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
|+....+..+.... ..+++.+|.+.+.+++.+.+|+.+|+.+.+.+...
T Consensus 322 g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 322 GIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99998877655554 45669999999999999999999999999987554
No 27
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.33 E-value=2.5e-10 Score=117.68 Aligned_cols=268 Identities=13% Similarity=0.140 Sum_probs=165.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
..+.+.+++..++.+++.+...|..++++.+..++++ ..++.++..+..|+.-++||.++|.+....|-.+.|+
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~ 173 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFL 173 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3467888888899999999999999999999998755 7889999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223 93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD 172 (411)
Q Consensus 93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (411)
+++++.++.++.+...++.. +++..+.+...+-+...+
T Consensus 174 inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~--------------------------------------- 211 (524)
T PF05977_consen 174 INALSFLISILALLRWKPPP---PPSSLPRERFFSALREGL--------------------------------------- 211 (524)
T ss_pred HHHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHH---------------------------------------
Confidence 99988776655444332211 111111111111000000
Q ss_pred hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVP-IFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQS 251 (411)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~ 251 (411)
|. +...+.+...+. .++..+.....+..+ +.+..+. + +.+ ....+.+..
T Consensus 212 -----------------ry-----v~~~~~l~~~l~~~~~~~l~~~a~~aLl-Pl~a~~~--l--~~~---a~~yGll~a 261 (524)
T PF05977_consen 212 -----------------RY-----VRSSPPLRSVLLRSFLFNLFASAVWALL-PLFARDV--L--GGG---ASGYGLLLA 261 (524)
T ss_pred -----------------HH-----HhcchHHHHHHHHHHHHHHhhhHHHHhh-hHHHHHH--h--CCc---HHHHHHHHH
Confidence 00 000111111111 111111111111111 1222211 1 111 011222333
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 331 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 331 (411)
.-++..++.+ ++.+..+|+ .+..+-+..+.++.+++++.+++.. +.+...+..++
T Consensus 262 ~~gvGai~Ga-----l~~~~l~~~------~~~~~lv~~~~~~~a~~~~~lal~~--------------~~~~~~~~l~l 316 (524)
T PF05977_consen 262 AFGVGAILGA-----LLLPRLRRR------LSSRRLVLLASLLFALALLLLALSP--------------SFWLALIALFL 316 (524)
T ss_pred HHHHHHHHHH-----HHHHHhhcc------cCcchhhHHHHHHHHHHHHHHhcch--------------HHHHHHHHHHH
Confidence 3334333333 333333332 2333445667777777777766642 55666778889
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.|++.....+..++.+.+.+|++++|+.++++.+....+..+|+.+.+.+..
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888999999999999999999998888888888887777644
No 28
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.33 E-value=8.7e-11 Score=117.17 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=156.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++++.+++.+ +.|...+.+.|.+++++ |+++.+++..+.++|..++|.+++++.+..+|++.|.+
T Consensus 105 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 105 QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 346778888899998865 46888888888887543 78899999999999999999999999998999999998
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++..++..+......+.- .+|..++... +.-+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--------------------------------------------~~~~~ 211 (408)
T PRK09874 178 TASVLFLCFLVTLFCIREN--FQPVSKKEML--------------------------------------------HMREV 211 (408)
T ss_pred HHHHHHHHHHHHHHHhccC--cccccchhhh--------------------------------------------HHHHH
Confidence 8876665554433221110 0011000000 00000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP 253 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in 253 (411)
. + ..++++....+ +.....+........+.+.....+...... ......+.+..+.
T Consensus 212 ~---------------~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~ 267 (408)
T PRK09874 212 V---------------T-----SLKNPKLVLSL---FVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIASVP 267 (408)
T ss_pred H---------------H-----hCcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHH
Confidence 0 0 00011111111 111111111111111111111111000000 0000012223344
Q ss_pred HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223 254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG 333 (411)
Q Consensus 254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 333 (411)
.+..++..|+.+++.++..+| +.+..+..+.+++++..... .+.+.+....++.+
T Consensus 268 ~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g 322 (408)
T PRK09874 268 GVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIPMSFV--------------QTPLQLGILRFLLG 322 (408)
T ss_pred HHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHH
Confidence 455566677777766544322 22345555555555544432 13455556668889
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+++....+...+.+.+.+|++.+|..+|+++....+|..+|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~ 372 (408)
T PRK09874 323 AADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA 372 (408)
T ss_pred hhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence 99999888888888999999999999999999999999999999887643
No 29
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.33 E-value=6e-10 Score=111.39 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++.+++++++.|...|...+++.|.+++++ |+++.++...+.|+|.++||.+++++.+++||++.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 467889999999999999999999999999997644 78999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q 015223 94 SAAAMALG 101 (411)
Q Consensus 94 ~~~~~~l~ 101 (411)
.++..++.
T Consensus 180 ~~~l~~~~ 187 (394)
T PRK10213 180 AAVMGVLC 187 (394)
T ss_pred HHHHHHHH
Confidence 87554433
No 30
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.30 E-value=8.8e-10 Score=108.46 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++.+.+++.+.+...|...++..+..++++ + .+....++.+...++|..+||.+++++.++++|++.|++
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG-R---EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h---hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 345666777777877778888888888888765432 1 122336788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 015223 94 SAAAMALGLFGVV 106 (411)
Q Consensus 94 ~~~~~~l~~i~~~ 106 (411)
.++..++..+...
T Consensus 161 ~~~~~~~~~~~~~ 173 (375)
T TIGR00899 161 AALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHHH
Confidence 8876555544433
No 31
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.30 E-value=8.7e-10 Score=108.21 Aligned_cols=261 Identities=10% Similarity=0.023 Sum_probs=149.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-------
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG------- 86 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g------- 86 (411)
.+.+.++....+.+++.+...|...+++.|.+++++ |+.+.++...+.++|.++++.+++++.++.+
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~ 154 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLIT 154 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 344555555666788888899999999999997544 7999999999999999999999999988888
Q ss_pred -chhHHHHHHHHHHHHHHHHhhcccceeccCCCCC-cc-hhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccc
Q 015223 87 -MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGS-IF-TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVF 163 (411)
Q Consensus 87 -~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~-~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (411)
||..|++.++..+++.+...+..++ |+.+ +. ++..
T Consensus 155 ~wr~~f~i~ai~~l~~~~~~~~~~~e-----~~~~~~~~~~~~------------------------------------- 192 (356)
T TIGR00901 155 LWGYIFFWTALLILPGLLVTLFLAKE-----PQEDASVPKPLT------------------------------------- 192 (356)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccC-----CCcccccchhHH-------------------------------------
Confidence 9999998887666554443322221 1100 00 0000
Q ss_pred cccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCee
Q 015223 164 LTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH 243 (411)
Q Consensus 164 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~ 243 (411)
.+..+..+ +....+....+..+.+....+...+.+..+.+.....+ .|
T Consensus 193 ----~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g---- 240 (356)
T TIGR00901 193 ----QAVLKPIR--------------------EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD----MG---- 240 (356)
T ss_pred ----HHHHHHHH--------------------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cC----
Confidence 00000000 00001110011122222222333333322222111111 12
Q ss_pred eCCcc---ccchhH-HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCc
Q 015223 244 VPPAS---LQSIPY-IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKT 319 (411)
Q Consensus 244 i~~~~---l~~in~-l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 319 (411)
.+++. +..+.. +..++..++.+++.+++.+| +.+..+.++.+++............+ .. .+ .
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~ 306 (356)
T TIGR00901 241 FSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL-----------YALLLFGIVQALTNAGFVWLASNGHH-DG-IT-F 306 (356)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHHHHHHHHHHHHHHHHhcCcc-cc-cc-c
Confidence 22332 233333 23445555656665544433 33566777776666655543210000 00 00 1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 015223 320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS 368 (411)
Q Consensus 320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~ 368 (411)
.+.++++...++.++++.+..+...++..+.+|+++||.++|+.+...+
T Consensus 307 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 307 PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 2445567777889999999999999999999999999999999877654
No 32
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.28 E-value=7.1e-10 Score=110.80 Aligned_cols=259 Identities=15% Similarity=0.067 Sum_probs=149.1
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHH
Q 015223 20 FLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMA 99 (411)
Q Consensus 20 ~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~ 99 (411)
++.+.+++++.|+..|...+++.|.+++++ |.++.++.....++|..+||.++|++.+. .|+..|++.....+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 567889999999999999999999998644 89999999999999999999999999884 47878877665544
Q ss_pred HHHHHHhhcccceeccCCCCCcc-hhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhhhhh
Q 015223 100 LGLFGVVSGTLYYRNKRPQGSIF-TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV 178 (411)
Q Consensus 100 l~~i~~~~~~~~~~~~~p~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 178 (411)
++.+.... +++.+++.++. .+..+. . .++.+..+.+
T Consensus 165 ~~~~~~~~----l~~~~~~~~~~~~~~~~~---------------------------------~-----~~~~~~~~~l- 201 (393)
T PRK11195 165 LAALFNLF----IPRLGARRPGQSWNPIAL---------------------------------L-----RDFFHACRVL- 201 (393)
T ss_pred HHHHHHhc----CCCCcccccccCCCHHHH---------------------------------H-----HHHHHHHHHH-
Confidence 44332222 11111110000 000000 0 0000000000
Q ss_pred ccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhcccCCCCeeeCCccccchhHH
Q 015223 179 EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQ---TFSVQQGSAMNNKLTKNFHVPPASLQSIPYI 255 (411)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~---s~~~~~~~~~~~~~g~g~~i~~~~l~~in~l 255 (411)
.++++ ++. .......+|....... ..|.++.. +.+ ....+.+.....+
T Consensus 202 ------------------~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l----g~s---~~~~G~~~~~~~~ 252 (393)
T PRK11195 202 ------------------WRDKL--GRF--SLAGTTLFWGAGATLRFLVLAWAPVAL----GIT---LNQPAYLQAVVAI 252 (393)
T ss_pred ------------------HhCch--hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc----CCC---hhHHHHHHHHHHH
Confidence 01111 111 1111122233322221 12332221 111 0113344555556
Q ss_pred HHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHH
Q 015223 256 MLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS 335 (411)
Q Consensus 256 ~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ig 335 (411)
..++..++.+++. +|+ ...+.+..|. +.++..+..... .+.++.+...++.+++
T Consensus 253 g~i~g~~~~~~l~----~~~-------~~~~~~~~g~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~G~~ 306 (393)
T PRK11195 253 GIAVGAGAAARLV----TLE-------TVLRVLPAGI-LMGLVVLLMALQ--------------HSLLPAYPLLILIGAL 306 (393)
T ss_pred HHHHHHHHHHHHh----cCC-------cccchHHHHH-HHHHHHHHHHHH--------------hHHHHHHHHHHHHHHh
Confidence 6666666666543 222 1222344453 333333322221 2456666777889999
Q ss_pred HHHHhhHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 336 EMFTAVGLIEFFYKQSLKGM-QAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 336 e~l~~~~~~~~~~~~aP~~~-~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
..+..++..+.+.+..|++. +|..+++.++.+.+|..++..+.+.+..
T Consensus 307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T PRK11195 307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK 355 (393)
T ss_pred hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888777665 7999999999999999999988887643
No 33
>PRK10054 putative transporter; Provisional
Probab=99.27 E-value=1.3e-10 Score=116.09 Aligned_cols=263 Identities=12% Similarity=0.073 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
.+.+++.+.+.+.+.+.+.|...+...|.+++++ |.+++++.+...|+|..+||.+++++.+ .+|+..|.+.+
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 4455566667777777888889999999987543 7999999999999999999999999875 79999999888
Q ss_pred HHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhh
Q 015223 96 AAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKAC 175 (411)
Q Consensus 96 ~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 175 (411)
+..+++++......++ .+|++++..+ . .+ +. +
T Consensus 169 ~~~~i~~i~~~~~~~~---~~~~~~~~~~------------------~-------------------------~~-~~-~ 200 (395)
T PRK10054 169 ICSAFPLVFIQIWVQR---SEKAIATETG------------------S-------------------------VW-SP-S 200 (395)
T ss_pred HHHHHHHHHHHHHHhc---cccccccchh------------------h-------------------------hh-hh-h
Confidence 7766664433322211 1111100000 0 00 00 0
Q ss_pred hhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhHH
Q 015223 176 IKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYI 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~l 255 (411)
+ -.++++.....+..++....+..... ....++.... +.... ....+.+..++.+
T Consensus 201 --------------~-----~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~--~~~~~---~~~~g~~~~~~~~ 255 (395)
T PRK10054 201 --------------V-----LLQDKALLWFTCSGFLASFVSGAFAS-CISQYVMVVA--DSDFA---EKVVAVVLPVNAA 255 (395)
T ss_pred --------------h-----hccCceehHHHHHHHHHHHHHHHhhh-hHHHHHHHhc--ccchH---HHHHHHHHHhhhh
Confidence 0 00111111111111111111111111 1112221111 11110 0012234444544
Q ss_pred HHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHH
Q 015223 256 MLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLS 335 (411)
Q Consensus 256 ~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ig 335 (411)
..+...+..+++.+ |. ++.+.+..|+++.++++....... .+.+.+....++.++|
T Consensus 256 ~~~~~~~~~g~~~~----~~-------~~~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g 311 (395)
T PRK10054 256 MVVSLQYSVGRRLN----AA-------NIRPLMTAGTLCFVIGLVGFIFSG-------------NSLLLWGMSAAVFTVG 311 (395)
T ss_pred heeeehhHHHHHHc----cC-------CchhHHHHHHHHHHHHHHHHHHcc-------------hHHHHHHHHHHHHHHH
Confidence 44444555555442 22 223345677777777776665431 1344344566899999
Q ss_pred HHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 336 EMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 336 e~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
|....|...+.+.+.+|++++|.+.|..+ ...+|..+|+.+++.+..
T Consensus 312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~ 358 (395)
T PRK10054 312 EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT 358 (395)
T ss_pred HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 99988888889999999999999988655 445788888877776643
No 34
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.27 E-value=1.1e-09 Score=108.73 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc--chhHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFG 92 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g--~~~~F~ 92 (411)
+.+.+++++++.++|.+...|...+++.|.+++++ |.++++++..+.++|..+++.+++.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 56778889999999999999999999999998644 7999999999999999999999999888766 999998
Q ss_pred HHHHHHHH
Q 015223 93 VSAAAMAL 100 (411)
Q Consensus 93 i~~~~~~l 100 (411)
+.++...+
T Consensus 173 ~~~~~~~~ 180 (405)
T TIGR00891 173 ISILPIIF 180 (405)
T ss_pred HHHHHHHH
Confidence 76654433
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.26 E-value=1.3e-09 Score=107.56 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+.+++.+...+...+++.|.+++++ |++++++.+...++|..+|+.+++++.++.+|++.|.+
T Consensus 91 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 164 (385)
T TIGR00710 91 NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAF 164 (385)
T ss_pred ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 346678889999999999999999999999998543 79999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 015223 94 SAAAMALGLFGVV 106 (411)
Q Consensus 94 ~~~~~~l~~i~~~ 106 (411)
.++..++..+...
T Consensus 165 ~~~~~~~~~~~~~ 177 (385)
T TIGR00710 165 LSLAGILLSALIF 177 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555544443
No 36
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.24 E-value=2e-09 Score=109.77 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~i 93 (411)
....+++.+++++++.|...|...+.+.+.+++++ |.++.++++.+.++|..+++.+++++.+.+ +|++.|++
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i 203 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYV 203 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhh
Confidence 35678889999999999999999999999998644 899999999999999999999999999884 99999998
Q ss_pred HHHHHHHHHH
Q 015223 94 SAAAMALGLF 103 (411)
Q Consensus 94 ~~~~~~l~~i 103 (411)
.++..++..+
T Consensus 204 ~~~~~~~~~~ 213 (465)
T TIGR00894 204 FGIVGCAWSL 213 (465)
T ss_pred hhHHHHHHHH
Confidence 8765444433
No 37
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.23 E-value=2.3e-09 Score=106.30 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+...++++|+++++|.|.. +...+...+.+++++ |.++.++...+.++|..+++.+++++.+++|||+.|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 6788999999999999964 555566688887533 899999999999999999999999999999999999886
Q ss_pred HHHHHHH
Q 015223 95 AAAMALG 101 (411)
Q Consensus 95 ~~~~~l~ 101 (411)
++...+.
T Consensus 151 ~~l~~~~ 157 (368)
T TIGR00903 151 AAVAAAG 157 (368)
T ss_pred HHHHHHH
Confidence 6543333
No 38
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.23 E-value=1.2e-09 Score=107.46 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccch
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMD 88 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~ 88 (411)
..+++++.++++|.|...+...+++.|.+++++ |+.+.++.+.+.++|.++++.+++.+. +.++|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 467889999999999999999999999998654 789999999999999999999887654 357999
Q ss_pred hHHHHHHHHHHHH
Q 015223 89 VGFGVSAAAMALG 101 (411)
Q Consensus 89 ~~F~i~~~~~~l~ 101 (411)
+.|.+.++..+++
T Consensus 171 ~~~~~~~~~~~~~ 183 (394)
T TIGR00883 171 IPFLVSAVLVLIG 183 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 9998877654444
No 39
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.22 E-value=1.1e-09 Score=107.30 Aligned_cols=85 Identities=13% Similarity=-0.027 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHh-hHHhhhhccccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVAL-TVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~-~l~g~l~~~~g~~~~F~i 93 (411)
+.+.+++++.+.+++.|...|...+++.|.+++++ |++++++.....++|..+++ ++++.+.+..+|++.|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 56788899999999999999999999999998644 78899999999999999999 677778888999999988
Q ss_pred HHHHHHHHHHHH
Q 015223 94 SAAAMALGLFGV 105 (411)
Q Consensus 94 ~~~~~~l~~i~~ 105 (411)
.++..++..+..
T Consensus 156 ~~~~~~~~~~~~ 167 (379)
T TIGR00881 156 PGIIAIIVSLIC 167 (379)
T ss_pred HHHHHHHHHHHH
Confidence 776555443333
No 40
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.21 E-value=1.4e-09 Score=109.39 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=69.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+.++|.|...+...+++.|.+++++ |.++.+++..+.++|.++++.+.+++.+.++|++.|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 356788999999999999999999999999998644 78899999999999999999999999999999999988
Q ss_pred HHHH
Q 015223 94 SAAA 97 (411)
Q Consensus 94 ~~~~ 97 (411)
..+.
T Consensus 178 ~~~~ 181 (426)
T PRK12307 178 GLLP 181 (426)
T ss_pred HHHH
Confidence 6543
No 41
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.21 E-value=1.7e-09 Score=105.82 Aligned_cols=268 Identities=11% Similarity=-0.013 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+.++|.|...+.....+.+.+++ + |+++.+++..+.++|.++++.+.+.+.+..+|++.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-K------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-c------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 3567788899999999998888888888888753 2 68899999999999998877777777777899999998
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
.++..++..+......+ + +|+..+. +.+. ... ...++.
T Consensus 162 ~~~~~~~~~~~~~~~~~---~-~~~~~~~------------------~~~~-----------------~~~-~~~~~~-- 199 (377)
T TIGR00890 162 MGIIFLLVIVLGAFLIG---Y-PPGQLIK------------------TNIE-----------------VSV-KDYTVW-- 199 (377)
T ss_pred HHHHHHHHHHHHHHhee---c-Cchhccc------------------cCcc-----------------cch-hhhhHH--
Confidence 87665554444332211 1 1110000 0000 000 000000
Q ss_pred hhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchh
Q 015223 174 ACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIP 253 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in 253 (411)
+ -..++ ....+...+.. ....+......+....+ +.... . -..+.+..+.
T Consensus 200 ----------------~-----~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~-~--~~~~~~~~~~ 249 (377)
T TIGR00890 200 ----------------E-----MLRTP-QFWVLYLSFFL---NAVSGLLLIGLYKPYGQ--SLGLS-D--GFLVLAVSIS 249 (377)
T ss_pred ----------------H-----HHcCc-cHHHHHHHHHH---HhHHHHHHHHHHHHHHH--HcCCC-H--HHHHHHHHHH
Confidence 0 00111 11111111111 11111111111111111 11111 0 0123445666
Q ss_pred HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223 254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG 333 (411)
Q Consensus 254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 333 (411)
.+..++..++.+++.+++.+|+ .+.++.++.+++++...... ..+...+....++.+
T Consensus 250 ~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 250 SIFNGGGRPFLGALSDKIGRQK-----------TMSIVFGISAVGMAAMLFIP------------MLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHcc------------cchhHHHHHHHHHHH
Confidence 6777777888888877665432 14566666777766555432 112222333345556
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++.....+....++.+..|++.|+.++|+.+....+|+.+++.+.+.+..
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 356 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT 356 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555554555678899999999999999999999999999999887643
No 42
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.21 E-value=3.8e-09 Score=105.40 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHH
Q 015223 22 ALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALG 101 (411)
Q Consensus 22 ~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~ 101 (411)
++.+.+.+ +...|...++..|..++++ | ......++...+.++|..+||.+++++.+++|||..|++.++..++.
T Consensus 112 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~ 186 (393)
T PRK15011 112 GVFLSSFG-STANPQMFALAREHADKTG---R-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVC 186 (393)
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHhhhcc---c-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34444444 4567788888877665432 1 12334478889999999999999999999999999999887655544
Q ss_pred HHH
Q 015223 102 LFG 104 (411)
Q Consensus 102 ~i~ 104 (411)
.+.
T Consensus 187 ~~~ 189 (393)
T PRK15011 187 GVM 189 (393)
T ss_pred HHH
Confidence 443
No 43
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.18 E-value=2.8e-09 Score=120.48 Aligned_cols=267 Identities=14% Similarity=0.045 Sum_probs=152.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc--------c-
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH--------S- 85 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~--------~- 85 (411)
+.+.+++.+++++++.|...|...+++.|.+++++ |.++++++.++.++|.++|+.+++++.+. +
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 46788899999999999999999999999998754 89999999999999999999999999775 2
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccc
Q 015223 86 GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLT 165 (411)
Q Consensus 86 g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (411)
+|.+.+.+..+...+..+++.+..+ +. |..++... +.. . ...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~------------------~~~--------------~-~~~- 217 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLP---KV-PAAAPEVF------------------DKK--------------K-YLF- 217 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCc---CC-CCCCcccc------------------ccc--------------c-ccc-
Confidence 3334443333222222122222111 11 11100000 000 0 000
Q ss_pred cchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhH---HHHHHHHhhcccCCCCe
Q 015223 166 QRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQT---FSVQQGSAMNNKLTKNF 242 (411)
Q Consensus 166 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s---~~~~~~~~~~~~~g~g~ 242 (411)
. .......+. +...+.+.. .++....++.......+ .+.... ++ .
T Consensus 218 ~-~~~~~~~~~--------------------l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~g--~ 265 (1146)
T PRK08633 218 P-KLLWRNLKL--------------------LRSDRVLWL---AIIGLSYFWFISQLAQANFPAYAKEV------LG--L 265 (1146)
T ss_pred H-HHHHHHHHH--------------------HhcCcHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHH------hC--C
Confidence 0 000000000 000111111 11122222222221111 222211 11 1
Q ss_pred ee--CCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCcc
Q 015223 243 HV--PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTL 320 (411)
Q Consensus 243 ~i--~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
.. ..+.+..+..+..++...+.+++. +|. .....+.+|.++.+++++++... .
T Consensus 266 s~~~~~g~~~~~~~ig~~~g~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~--------------~ 320 (1146)
T PRK08633 266 DNTFQVQYLLAASAIGIGIGSLLAGRLS----GRH-------IELGLVPLGALGLALSLFLLPTA--------------P 320 (1146)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHh----CCc-------eEccchhHHHHHHHHHHHHHHHh--------------h
Confidence 11 123444555555566666666554 332 11223456666666666665543 2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+.++++...++.+++..+..+...+++.+.+|++.||.++|+.++...+|..+++.++..+.
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777889999999998888889999999999999999999999888877776666543
No 44
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.17 E-value=9.3e-09 Score=102.42 Aligned_cols=82 Identities=12% Similarity=0.021 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++.+.+.+++.+...+...++..|.+++++ +.++.++...+..+|..++|.+++++.++.||++.|++
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 346778889999999999888888888888887533 67889999999999999999999999998999999998
Q ss_pred HHHHHHHH
Q 015223 94 SAAAMALG 101 (411)
Q Consensus 94 ~~~~~~l~ 101 (411)
.++...+.
T Consensus 168 ~~~~~~~~ 175 (394)
T PRK11652 168 LLLLGAGV 175 (394)
T ss_pred HHHHHHHH
Confidence 76554433
No 45
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.16 E-value=1e-08 Score=104.75 Aligned_cols=84 Identities=19% Similarity=0.096 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccc
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THS 85 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~ 85 (411)
.....++++++++++|.|+..|...++++|.+++++ |++++++...+..+|.++++.+++++. +.+
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 191 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD 191 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence 345678899999999999999999999999999744 799999999999999999988776543 457
Q ss_pred cchhHHHHHHHHHHHHHH
Q 015223 86 GMDVGFGVSAAAMALGLF 103 (411)
Q Consensus 86 g~~~~F~i~~~~~~l~~i 103 (411)
|||+.|.+.++..++..+
T Consensus 192 gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 192 GWRYMFASEAIPALLFLM 209 (479)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 999999988766555443
No 46
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.15 E-value=5.6e-09 Score=105.43 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHH---hhhhccccchhH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL---VWVQTHSGMDVG 90 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~---g~l~~~~g~~~~ 90 (411)
.+.+.+++++.++++|.|...+...++++|.+++++ |.+++++++.+.++|.++++.++ +.+.+..+||+.
T Consensus 125 ~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~ 198 (481)
T TIGR00879 125 LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198 (481)
T ss_pred cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence 345688999999999999999999999999998654 79999999999999999999999 777778899999
Q ss_pred HHHHHHHHHHHHHH
Q 015223 91 FGVSAAAMALGLFG 104 (411)
Q Consensus 91 F~i~~~~~~l~~i~ 104 (411)
|++.++..++.++.
T Consensus 199 f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 199 LGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99976555444433
No 47
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.15 E-value=3.3e-09 Score=108.11 Aligned_cols=285 Identities=12% Similarity=-0.001 Sum_probs=155.7
Q ss_pred HHHHHH-HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 16 ASIFFL-ALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 16 ~~~~~~-~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
...+++ .+++.++|.|...+...+.+.+.++ ++ |.++.++.+.+.++|..++|.+++++.+.+||++.|++.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 444443 4577899998765666678888884 22 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..+++.+...+.++.-.. ++..+..+. ...+.+. ...+. ......+..
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~---------------~~~~~-~~~~~~~~~ 229 (455)
T TIGR00892 180 GGLLLHCCVCGALMRPVGPS--QRVSKSKSK------------EGLPPDG---------------STKKL-SKKSTAEKI 229 (455)
T ss_pred HHHHHHHHHHHHHhCCCCcc--ccccccccc------------ccCCCCC---------------ccccc-cccchhhhh
Confidence 87766555444333221000 000000000 0000000 00000 000000000
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhH
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPY 254 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~ 254 (411)
. ....++. ..++ .+.. ...........+....+.+..... +.... ....+.+.++..
T Consensus 230 ~---------~~~~~~~-----~~~~-~~~~---~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s---~~~~g~~~~~~~ 286 (455)
T TIGR00892 230 N---------RFLDFSL-----FTHR-GFLV---YLSGNVIMFLGFFAPIIFLVPYAK--DKGVD---EYEAAFLLSIIG 286 (455)
T ss_pred h---------hhcchHH-----hcCc-hHHH---HHHHHHHHHHHccchHHHHHHHHH--HcCCC---HHHHHHHHHHHH
Confidence 0 0000010 0111 1111 111111112222211111111111 11111 111334455566
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhH--HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQR--IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIF 332 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k--~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~ 332 (411)
+..++..|+.+++.++.. .+..++ +.+++++.++++++.... .+.++++...++.
T Consensus 287 ~~~~~~~~~~g~l~d~~~---------~~~~~~~~~~~~~~~~~l~~ll~~~~--------------~~~~~~~i~~~~~ 343 (455)
T TIGR00892 287 FVDIFARPSCGLIAGLKW---------IRPHVQYLFSFALLFNGLTHLLCALA--------------GDYTGLVIYCIFF 343 (455)
T ss_pred HHHHHHHHHHHHHhcccc---------cCHHHHHHHHHHHHHHHHHHHHHHHh--------------chHHHHHHHHHHH
Confidence 666777777776654211 111222 233444444444433321 2456667777899
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 333 GLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 333 ~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+++.....+...+.+.+.+|++.+|..+|+.+....+|+.+|+.+.+.+..
T Consensus 344 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 344 GLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred HHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 999988888888899999999999999999999999999999999997644
No 48
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.13 E-value=1.8e-08 Score=99.40 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++.+.+.+++.+...+...+++.|.+++++ |.+++++.+...++|..++|.+++++.++++|++.|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 45677888999999999999999999999987644 799999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 015223 95 AAAMALGLFGV 105 (411)
Q Consensus 95 ~~~~~l~~i~~ 105 (411)
++...+..+..
T Consensus 152 ~~~~~~~~~~~ 162 (377)
T PRK11102 152 ALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHH
Confidence 76655554443
No 49
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.12 E-value=1.9e-08 Score=101.83 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++.+++.+++.|...|...+.+.+++++++ |++++++++.+.++|..+++.+++++.+++||++.|++.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45667777888899999999999999999998644 799999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 015223 95 AAAMALG 101 (411)
Q Consensus 95 ~~~~~l~ 101 (411)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 7654433
No 50
>PRK11043 putative transporter; Provisional
Probab=99.12 E-value=9.2e-09 Score=102.69 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.++++|.+...+...+++.|.+++++ +.+.++......++|..++|.+++++.++++|++.|++.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 56777888999999998888888899999998643 677888888999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 015223 95 AAAMALGLFGV 105 (411)
Q Consensus 95 ~~~~~l~~i~~ 105 (411)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 76655554433
No 51
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.12 E-value=2.5e-08 Score=102.58 Aligned_cols=75 Identities=12% Similarity=0.048 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccch
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMD 88 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~ 88 (411)
..+.+.++++++|.|+..|...+++.+.+|+++ |+.+.++...+.++|..+|+.+..++. .++|||
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 358899999999999999999999999998754 788889988888888888886655442 268999
Q ss_pred hHHHHHHHH
Q 015223 89 VGFGVSAAA 97 (411)
Q Consensus 89 ~~F~i~~~~ 97 (411)
+.|++.++.
T Consensus 193 ~~f~i~~~~ 201 (490)
T PRK10642 193 IPFFIALPL 201 (490)
T ss_pred HHHHHHHHH
Confidence 999987644
No 52
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.12 E-value=2.2e-08 Score=101.30 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccc
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGM 87 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~ 87 (411)
...+++.|+++++|.|+..|...+++.|.+|+++ |+.+.++.+.+.+.|.++++.+.+.+. +.+||
T Consensus 124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 4578899999999999999999999999998754 788999999999999999988766554 25899
Q ss_pred hhHHHHHHHHHH
Q 015223 88 DVGFGVSAAAMA 99 (411)
Q Consensus 88 ~~~F~i~~~~~~ 99 (411)
|+.|++.++..+
T Consensus 198 r~~F~i~~~~~l 209 (432)
T PRK10406 198 RIPFALGAVLAV 209 (432)
T ss_pred HHHHHHHHHHHH
Confidence 999998765433
No 53
>TIGR00898 2A0119 cation transport protein.
Probab=99.11 E-value=1.6e-08 Score=104.20 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++++.+++.|+..+...+++.|.+++++ |+.+.++...+.++|.++++.++.++.+ ||+.|++
T Consensus 178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~ 248 (505)
T TIGR00898 178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLA 248 (505)
T ss_pred ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHH
Confidence 356788999999999999999999999999998654 7888999999999999999999877754 9999998
Q ss_pred HHHHHHHHHHHH
Q 015223 94 SAAAMALGLFGV 105 (411)
Q Consensus 94 ~~~~~~l~~i~~ 105 (411)
.++..++..+..
T Consensus 249 ~~i~~~~~~~~~ 260 (505)
T TIGR00898 249 VSLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHHH
Confidence 876655554443
No 54
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.11 E-value=2e-08 Score=100.37 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~ 92 (411)
.+.+.++++++++++|.|...+...+.+.|.++ ++ |.++.+++..+.++|..+|+.+++++.++. +|+..|.
T Consensus 95 ~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~ 167 (393)
T PRK09705 95 PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLA 167 (393)
T ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 356678899999999999999999999999886 33 688999999999999999999999998875 8998876
Q ss_pred HHHHH
Q 015223 93 VSAAA 97 (411)
Q Consensus 93 i~~~~ 97 (411)
+-++.
T Consensus 168 ~~~~~ 172 (393)
T PRK09705 168 WWALP 172 (393)
T ss_pred HHHHH
Confidence 65443
No 55
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.10 E-value=1.5e-08 Score=100.64 Aligned_cols=84 Identities=6% Similarity=-0.018 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.+++++.+.+++.|...|...+++.|.+++++ |.++++++..+.++|..+||.+++++.+.++||+.|.+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 457888999999999999988988888998887533 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 015223 94 SAAAMALGLF 103 (411)
Q Consensus 94 ~~~~~~l~~i 103 (411)
.++...+..+
T Consensus 163 ~~~~~~~~~~ 172 (382)
T PRK10091 163 IAVFNIAVLA 172 (382)
T ss_pred HHHHHHHHHH
Confidence 8865544433
No 56
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.4e-08 Score=99.96 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=77.3
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
..+...+.++|++.++..|.+.+...+...|..||++ |.++.++.+.+..++-.+|.-++.++.|.+|||..|+
T Consensus 98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 4578899999999999999999999999999999866 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015223 93 VSAAAMALGLFGV 105 (411)
Q Consensus 93 i~~~~~~l~~i~~ 105 (411)
+-++...++++..
T Consensus 172 ~ia~l~ll~~~~~ 184 (394)
T COG2814 172 AIAVLALLALLLL 184 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8775544444333
No 57
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.09 E-value=9.1e-09 Score=104.58 Aligned_cols=279 Identities=10% Similarity=0.107 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHHHHH
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGVSA 95 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~i~~ 95 (411)
+.+.+.|+++|++.|...|++..+.++..|+.+ |.++.++.+.+..+|.+++..++|++-++ .||+.+|++.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 466889999999999999999999999999755 89999999999999999999999999998 99999999988
Q ss_pred HHHHHHHHHHhhcccceeccCCCCCcchh--HHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 96 AAMALGLFGVVSGTLYYRNKRPQGSIFTP--IAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 96 ~~~~l~~i~~~~~~~~~~~~~p~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
+..++-.++++. .+.+ .|+++|... ..+.+...... ..+.
T Consensus 203 ~~g~i~~~~w~~---~~~d-~P~~h~~is~~El~~I~~~k~~--------------------------~~~~-------- 244 (466)
T KOG2532|consen 203 IVGLIWFILWFL---FYSD-SPSKHPNISEKELKYIEKGKSE--------------------------AHVK-------- 244 (466)
T ss_pred HHHHHHHHHHHH---HhcC-CcccCCCCCHHHHHHHHhcccc--------------------------cccC--------
Confidence 654433333322 2333 355444321 11111000000 0000
Q ss_pred hhhhhccCCCCCCCCcc-cccchhHHHHHHHHhHHHHHHHHHHHHHHH--hhhhHHHHHHHHhhcccCCCCeeeCCcccc
Q 015223 174 ACIKVEDGTNKKESPWR-LCTVTQVEQVKVLISVVPIFACTIIFNTIL--AQLQTFSVQQGSAMNNKLTKNFHVPPASLQ 250 (411)
Q Consensus 174 a~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~--~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~ 250 (411)
. ....||+ +++.. .++.+ .+....-.|..+ .|..++|..+..++|.. ..+++.
T Consensus 245 -------~--~~~vP~~~i~ts~------~vwai--~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~-------~~G~~s 300 (466)
T KOG2532|consen 245 -------K--KPPVPYKAILTSP------PVWAI--WISAFGGNWGFYLLLTYLPTYLKEVLGFDVR-------ETGFLS 300 (466)
T ss_pred -------C--CCCCCHHHHHcCH------HHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHhCCChh-------hhhHHH
Confidence 0 0012332 11111 11111 111112222222 23344665555433322 356667
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHH--HHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI--GFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~--~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
+++.+...+...+.+.+-+++.+| .. +.+..+|+ .++....++.++.+++.. + -.. |. +
T Consensus 301 alP~l~~~~~k~~~g~lsD~l~~~-~l---s~t~~rkifn~i~~~~~ai~l~~l~~~~--------~----~~~-~~--a 361 (466)
T KOG2532|consen 301 ALPFLAMAIVKFVAGQLSDRLTFR-IL---SETTVRKIFNTIAFGGPAVFLLVLAFTS--------D----EHR-LL--A 361 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cC---chHhHHHHHHhHHHHHHHHHHHeeeecC--------C----Ccc-hH--H
Confidence 788888888888888888887765 22 12344454 334444455555555442 1 011 22 3
Q ss_pred HHHHHHHHHHHh--hHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTA--VGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~--~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++++++..+.. .+. -+...+- -|++.+..+|+.++...+...+++.+++.+.+
T Consensus 362 ~~~l~~~~~~~g~~~~G-f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 362 VILLTIAIGLSGFNISG-FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHHHHHHcccchhh-hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 355566666554 333 1233333 57788999999999999999999999998865
No 58
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.09 E-value=1.4e-08 Score=102.30 Aligned_cols=267 Identities=13% Similarity=0.053 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-------ccccch
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-------THSGMD 88 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-------~~~g~~ 88 (411)
...+++...+.+++.+.+.+...++..+..++++ | |.+..++.....++|.+++..+.+.+. +..+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR--E---RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 4455556666788888888888888888876533 2 688899999999999888777655443 346899
Q ss_pred hHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccch
Q 015223 89 VGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRF 168 (411)
Q Consensus 89 ~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
+.|.+.++...+..++.....++ +++..+.. .. . +.
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e----~~~~~~~~------------------~~--------------------~--~~ 209 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKE----RYSEIPKN------------------IE--------------------K--KL 209 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEe----cCCCCCcc------------------cc--------------------c--CC
Confidence 99888776655554443332221 11100000 00 0 00
Q ss_pred hhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCcc
Q 015223 169 RFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPAS 248 (411)
Q Consensus 169 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~ 248 (411)
+..+..+.. .+++ .+..+ .......+..+........+.. ...++ . .-..++
T Consensus 210 ~~~~~~~~l-------------------~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~~~~ 261 (437)
T TIGR00792 210 SLKQIFKAL-------------------FKND-QLLIL---CLAYLFYNLAFNIKNGVQVYYF---TYVLG-D-PELFSY 261 (437)
T ss_pred CHHHHHHHH-------------------hCCH-HHHHH---HHHHHHHHHHHHHHcchhheeE---eeecC-C-hHHHHH
Confidence 000000000 0111 11111 1122222222221111111100 01111 0 001223
Q ss_pred ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
+..+..+..++..|+.+++.+++.+| +.+..|.++.+++++...+.. .+.++++..
T Consensus 262 ~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 317 (437)
T TIGR00792 262 MGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFFAG-------------SNLPLILVL 317 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcc-------------hhHHHHHHH
Confidence 44555666777788888776554433 234667777777776665431 134455666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++.+++.....+...+++.+.+| ++.+|.++|++++...+|+.+|+.+.+.+-.
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 318 IILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899998888777788888766 6778999999999999999999999887644
No 59
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.08 E-value=2.9e-08 Score=106.13 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc----------
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---------- 84 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~---------- 84 (411)
+.+.+++++++.++|.|+..|...+++.+.++++. |+..+++..+...+|.++++.++.++..+
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 46788899999999999999999999999998633 78899999999999999999877665433
Q ss_pred ---ccchhHHHHHHHHHHHHHHH
Q 015223 85 ---SGMDVGFGVSAAAMALGLFG 104 (411)
Q Consensus 85 ---~g~~~~F~i~~~~~~l~~i~ 104 (411)
.+||+.|++.++..++.++.
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGA 350 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHH
Confidence 36889888877655544443
No 60
>PRK09952 shikimate transporter; Provisional
Probab=99.08 E-value=7.5e-08 Score=97.67 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccch
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMD 88 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~ 88 (411)
..+.+.|.++++|.|+..|...+++.+.+|+++ |+.+.+....+.++|.+++..+..++. +++|||
T Consensus 126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr 199 (438)
T PRK09952 126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWR 199 (438)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChH
Confidence 367889999999999999999999999998744 788888888999999998887776654 358999
Q ss_pred hHHHHHHHH
Q 015223 89 VGFGVSAAA 97 (411)
Q Consensus 89 ~~F~i~~~~ 97 (411)
+.|++.++.
T Consensus 200 ~~f~~~~~~ 208 (438)
T PRK09952 200 IPFLFSIVL 208 (438)
T ss_pred HHHHHHHHH
Confidence 999987754
No 61
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.08 E-value=3.3e-08 Score=99.48 Aligned_cols=85 Identities=9% Similarity=0.052 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+...+++++++++++.+...+...+.+.|.+++++ |.++++++..+.++|..+||.+++++.++.||++.|++
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456788999999999998777777788889988644 68889999999999999999999999998999999998
Q ss_pred HHHHHHHHHHH
Q 015223 94 SAAAMALGLFG 104 (411)
Q Consensus 94 ~~~~~~l~~i~ 104 (411)
.++..+++.+.
T Consensus 176 ~~~~~~i~~~~ 186 (413)
T PRK15403 176 IAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHH
Confidence 88766655544
No 62
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.07 E-value=3.1e-08 Score=98.57 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+...+++++.+++++.+...+...+++.|.+++++ |.+++++.+...++|..++|.+++++.+..+|++.|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 45667888999999999999999999999998644 799999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHH
Q 015223 95 AAAMALGLFGV 105 (411)
Q Consensus 95 ~~~~~l~~i~~ 105 (411)
++..++..+..
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 76655554443
No 63
>PRK03699 putative transporter; Provisional
Probab=99.05 E-value=8.7e-08 Score=95.63 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-ccccchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-THSGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-~~~g~~~~F~ 92 (411)
.+.+.+++.+.+.+++.|...+...+.+.+.+++++ |..+.+..+...++|..++|.+.+++. ++.+||+.|.
T Consensus 93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 93 HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 356778889999999999999999999999997533 788888888999999999999988875 4679999999
Q ss_pred HHHHHHHHHHH
Q 015223 93 VSAAAMALGLF 103 (411)
Q Consensus 93 i~~~~~~l~~i 103 (411)
+.++..++..+
T Consensus 167 ~~~~~~~~~~~ 177 (394)
T PRK03699 167 CIGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHHH
Confidence 87765544433
No 64
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.05 E-value=5.2e-08 Score=100.35 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=73.2
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc-cccchhHH
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT-HSGMDVGF 91 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~-~~g~~~~F 91 (411)
..+.+.+++.+.+.+++.+...+...++..|.+++++ |.++.++..++.++|.++++.+++++.+ ..|||..|
T Consensus 104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f 177 (491)
T PRK11010 104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY 177 (491)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 4456778888889999999999999999999998644 7889999999999999999999999988 57999999
Q ss_pred HHHHHHHHHHHHH
Q 015223 92 GVSAAAMALGLFG 104 (411)
Q Consensus 92 ~i~~~~~~l~~i~ 104 (411)
++.++..++..+.
T Consensus 178 ~i~a~l~ll~~l~ 190 (491)
T PRK11010 178 WLMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 9988765555443
No 65
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.05 E-value=4e-08 Score=97.52 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF 91 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F 91 (411)
.+.+.+++++++.+++.|...|...+.+.+..++++ |++++++++.+.++|..+|+.+++++.+...+...+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 92 VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 356788899999999999999988888888876533 789999999999999999999999998754443333
No 66
>PRK15075 citrate-proton symporter; Provisional
Probab=99.04 E-value=6.7e-08 Score=97.82 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh--------ccccchh
Q 015223 18 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ--------THSGMDV 89 (411)
Q Consensus 18 ~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~--------~~~g~~~ 89 (411)
.++++++++++|.|...|+..+++.|.+|+++ |+++.+++....++|..+++.+++.+. +.+|||+
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 56889999999999999999999999998755 899999999988888888888877662 4689999
Q ss_pred HHHHHHH
Q 015223 90 GFGVSAA 96 (411)
Q Consensus 90 ~F~i~~~ 96 (411)
.|++..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987543
No 67
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.03 E-value=1.2e-07 Score=96.43 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHhhHHhhhhccccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~-~ig~~l~g~l~~~~g~~~~F~i 93 (411)
+.+.+++.+.+.+++.|...|.....+.+++++++ |.+++++++.+.++|. +++|+++..+....+|++.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 46677888899999999999988889999987644 7999999999999986 5566654434334599999998
Q ss_pred HHHHHHHHHH
Q 015223 94 SAAAMALGLF 103 (411)
Q Consensus 94 ~~~~~~l~~i 103 (411)
.++..++..+
T Consensus 193 ~~~~~~~~~~ 202 (452)
T PRK11273 193 PAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHH
Confidence 8765554433
No 68
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.03 E-value=1.7e-08 Score=103.65 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.+.+++.+...+...+++.|.+++++ |.+++++++.+.++|..+++.+++++.++++|++.|++.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 56778899999999999999999999999998633 788999999999999999999999999999999999875
Q ss_pred HHH
Q 015223 95 AAA 97 (411)
Q Consensus 95 ~~~ 97 (411)
.+.
T Consensus 181 ~~~ 183 (496)
T PRK03893 181 ILP 183 (496)
T ss_pred HHH
Confidence 543
No 69
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.02 E-value=1.1e-07 Score=93.43 Aligned_cols=260 Identities=14% Similarity=0.124 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc--chhHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG--MDVGFG 92 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g--~~~~F~ 92 (411)
+...+++++++.++|.|...+...+.+.|.+++ + |.++++++..+.++|..+++.+++++.++.+ |++.|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 456677889999999999888888888888752 2 6889999999999999999999999877653 899887
Q ss_pred HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223 93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD 172 (411)
Q Consensus 93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (411)
+.++..++....++ .+.++ +++.++ +.. ..
T Consensus 159 ~~~~~~~~~~~~~~---~~~~~-~~~~~~-------------------~~~-----------------~~---------- 188 (355)
T TIGR00896 159 WWALPALLALLAWI---PQVRR-RVAANQ-------------------TTT-----------------RL---------- 188 (355)
T ss_pred HHHHHHHHHHHHHh---hhhcc-ccCCCC-------------------CCC-----------------CC----------
Confidence 66544333322211 11011 000000 000 00
Q ss_pred hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHH-HHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFA-CTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQS 251 (411)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~-~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~ 251 (411)
..++. ..++ ........+. ....++...... +.+.+ . .+.. ....+.+.+
T Consensus 189 --------------~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~l-p~~~~-~----~g~~---~~~~g~~~~ 239 (355)
T TIGR00896 189 --------------TPVRI-----WRSP-LAWQVTVFFGLQSGLYYSLIGWL-PAILI-S----HGAS---AATAGSLLA 239 (355)
T ss_pred --------------CCchh-----hcCH-hHHHHHHHHHHHHHHHHHHHHHH-HHHHH-H----cCCC---HHHHHHHHH
Confidence 00000 0112 1111111111 112222222222 12221 1 1111 011334455
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 331 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 331 (411)
+..+..++..++.+++.++..+| .+.+..+..+.+++++.+.... ....+. ..++
T Consensus 240 ~~~~~~i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~l 294 (355)
T TIGR00896 240 LMQLAQAASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAP-------------MHGLWA--WALV 294 (355)
T ss_pred HHHHHHHHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhh-------------hhHHHH--HHHH
Confidence 55666677777777765443211 1223556677777766665542 111121 2467
Q ss_pred HHHHHHHHhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 332 FGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 332 ~~ige~l~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
.++++....+...+.+.+.. |++.++..+|+.+....+|+.+|+.+.+.+...+
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999888877666665554 5678899999988888888889998888776544
No 70
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.02 E-value=1.2e-07 Score=94.86 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHhhHHhhhhccccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGE-LVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~-~ig~~l~g~l~~~~g~~~~F~i 93 (411)
+...+++.+.+.++|.+...+...+.+.+.+++++ |+++.+++..+.++|. .+||.+++++.+.+||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 45667788889999998888888888888887643 8999999999999996 6899999999988897655554
Q ss_pred HH
Q 015223 94 SA 95 (411)
Q Consensus 94 ~~ 95 (411)
..
T Consensus 178 ~~ 179 (402)
T TIGR00897 178 AL 179 (402)
T ss_pred HH
Confidence 43
No 71
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.99 E-value=6.6e-10 Score=109.44 Aligned_cols=88 Identities=22% Similarity=0.108 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~ 92 (411)
...+++.+.|.++++|.+...|...++++|.|++++ |++.|++||+++++|+.+|.+.+.++.+..+ |||+|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 567899999999999999999999999999999755 8999999999999999999999999988766 999999
Q ss_pred HHHHHHHHHHHHHhh
Q 015223 93 VSAAAMALGLFGVVS 107 (411)
Q Consensus 93 i~~~~~~l~~i~~~~ 107 (411)
..+++.++..++.++
T Consensus 193 ~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFL 207 (493)
T ss_pred eehHHHHHHHHHHHh
Confidence 998777766655444
No 72
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.98 E-value=1.4e-07 Score=94.83 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=69.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc------cccc
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT------HSGM 87 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~------~~g~ 87 (411)
.+...+++++.+++++.|...|...+++.+.+++++ |+++.+++..+.++|..+++.+++++.+ ..||
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw 167 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW 167 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence 346788899999999999999999999999998533 7899999999999999999999998864 4799
Q ss_pred hhHHHHHHHHHHHH
Q 015223 88 DVGFGVSAAAMALG 101 (411)
Q Consensus 88 ~~~F~i~~~~~~l~ 101 (411)
|+.|.+.++..++.
T Consensus 168 r~~f~~~~~~~l~~ 181 (412)
T TIGR02332 168 QWLFLLEGFPSVIL 181 (412)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999876554433
No 73
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.97 E-value=7.3e-08 Score=98.49 Aligned_cols=81 Identities=9% Similarity=-0.028 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc---cchhH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---GMDVG 90 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~---g~~~~ 90 (411)
.+...+++.+.+++++.|...|...+.+.+.+++++ |+++++++..+.++|..+++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 467888999999999999999999999999999755 799999999999999999999988776643 68888
Q ss_pred HHHHHHHHHH
Q 015223 91 FGVSAAAMAL 100 (411)
Q Consensus 91 F~i~~~~~~l 100 (411)
|.+.++..++
T Consensus 194 f~~~g~~~~~ 203 (467)
T PRK09556 194 FIFPSIIALI 203 (467)
T ss_pred HHHHHHHHHH
Confidence 8876654443
No 74
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.95 E-value=3e-08 Score=99.76 Aligned_cols=112 Identities=11% Similarity=0.107 Sum_probs=82.1
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.+++.+...+..++.+++.+++.+| +.+..+.++.+++++...+. .++++++
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~l~~~~~~l~~~~--------------~~~~~~~ 319 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFIINRIGAK-----------NALLLAGTIMAVRIIGSGFA--------------TGPLEVS 319 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHhc--------------ccHHHHH
Confidence 4556666666777788888877655443 22566777777777766653 2566777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH-HHHHHhHHHHHHhHhhhhhcc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~-~~l~~~~G~~lg~~l~~~~~~ 383 (411)
...++.+++.....+...+++.+..|++.++...+. +++...+|+.+++.+.+.+..
T Consensus 320 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 320 ILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 778899998888777777889999999999887655 667788899998888887644
No 75
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.94 E-value=2.3e-07 Score=89.78 Aligned_cols=85 Identities=15% Similarity=-0.004 Sum_probs=70.3
Q ss_pred cccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-----
Q 015223 10 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH----- 84 (411)
Q Consensus 10 ~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~----- 84 (411)
.+...+.+.+.+++.+++.|.+...+..++++++.-++++ +.+..++......+|+++||++++.+...
T Consensus 4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~ 77 (310)
T TIGR01272 4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL 77 (310)
T ss_pred hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence 3445678999999999999999999999999999988755 57789999999999999999999987631
Q ss_pred -----------ccchhHHHHHHHHHHH
Q 015223 85 -----------SGMDVGFGVSAAAMAL 100 (411)
Q Consensus 85 -----------~g~~~~F~i~~~~~~l 100 (411)
..|++.|++-+....+
T Consensus 78 ~~~~~~~~~~~~~~~~~yl~ia~~~~~ 104 (310)
T TIGR01272 78 SMQVATANAEAAKVHTPYLLLAGALAV 104 (310)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4788999855544333
No 76
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.91 E-value=1.1e-07 Score=94.93 Aligned_cols=267 Identities=8% Similarity=-0.012 Sum_probs=144.1
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHH
Q 015223 19 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAM 98 (411)
Q Consensus 19 ~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~ 98 (411)
+.++.++.+++.+...|...++..|.-++ +...++......|+|..+||.++|.+.+ ++|++.|++.++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 44556677788888888887776653211 2446788889999999999999998876 69999999887665
Q ss_pred HHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhhhhh
Q 015223 99 ALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKACIKV 178 (411)
Q Consensus 99 ~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 178 (411)
++..+..+... +++|+++...+ ..+.+ . ..+. .-+..
T Consensus 173 ~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~-~----------------~~~~----~~~~~---- 209 (396)
T TIGR00882 173 LILMLLLMFAK----PKAPSSATVAN--------------ALGAN-A----------------SAFS----LKLAL---- 209 (396)
T ss_pred HHHHHHHHHhC----CCCchhhhhhc--------------ccccc-c----------------CCCC----HHHHH----
Confidence 55543333211 11111100000 00000 0 0000 00000
Q ss_pred ccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCccccchhHHHHH
Q 015223 179 EDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPASLQSIPYIMLV 258 (411)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~~l~~in~l~il 258 (411)
+-..+++ +..++.........+...++..+.|...... +...+ . -..+.+.++..+...
T Consensus 210 ----------------~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~--~-~~~g~~~~~~~i~~~ 268 (396)
T TIGR00882 210 ----------------ELFRQRK-FWMFVLYVVGVACVYDVFDQQFANFFTSFFA-TPQQG--T-RVFGYVTTMGELLNA 268 (396)
T ss_pred ----------------HHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccc--h-HHHHHHHHHHHHHHH
Confidence 0001121 1122121111111122222222333222110 01111 0 012334555555566
Q ss_pred HHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHH
Q 015223 259 ILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMF 338 (411)
Q Consensus 259 l~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l 338 (411)
+..+..+++.++..+| +-+.+|.++.++++...... .+.+++.+..++.+++...
T Consensus 269 ~~~~~~g~l~~r~g~~-----------~~l~~~~~l~~l~~~~~~~~--------------~~~~~~~~~~~l~g~~~~~ 323 (396)
T TIGR00882 269 LIMFCAPLIINRIGAK-----------NALLIAGTIMSVRIIGSSFA--------------TTALEVVILKMLHAFEVPF 323 (396)
T ss_pred HHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHHHHH
Confidence 6666666665444332 22467777777766554432 3577777788899998877
Q ss_pred HhhHHHHHHHHHhhhhHHHHHHHH-HHHHHhHHHHHHhHhhhhhcc
Q 015223 339 TAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 339 ~~~~~~~~~~~~aP~~~~g~~~g~-~~l~~~~G~~lg~~l~~~~~~ 383 (411)
......+++.+..|++.++...+. ++....+|+.+++.+.+.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~ 369 (396)
T TIGR00882 324 LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD 369 (396)
T ss_pred HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence 765565777788888888776655 567888888888887776644
No 77
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.90 E-value=2.5e-07 Score=94.23 Aligned_cols=299 Identities=10% Similarity=0.027 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhh--hccc---------
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWV--QTHS--------- 85 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l--~~~~--------- 85 (411)
..+.+++.+.-++....++...++++|.+++++++ ++.+++++....|+|..+|+.++++. .+.+
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 45566676777788888899999999999976532 46899999999999999999999875 2211
Q ss_pred ----cchhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCc
Q 015223 86 ----GMDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGS 161 (411)
Q Consensus 86 ----g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (411)
+.+..|++.++.++++.++..+..|+.+..+++..+.. .++.. +
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~~~~~-------~---------- 238 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------EAAPP-------S---------- 238 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------hcccc-------c----------
Confidence 66889999998888887776665444321011100000 00000 0
Q ss_pred cccccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH-hhcccCCC
Q 015223 162 VFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS-AMNNKLTK 240 (411)
Q Consensus 162 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~-~~~~~~g~ 240 (411)
.+... .. .+.+ ++..+ +-.|.+.+++..-.+.-+-|..+.+..|.|+-++. +-+..-.+
T Consensus 239 -~~~~~-~~---~~~i-----------~~~~~----~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~ 298 (477)
T TIGR01301 239 -KHGEE-AF---FGEL-----------FGAFK----YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298 (477)
T ss_pred -ccchh-hh---HHHH-----------HHHHH----HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence 00000 00 0000 00000 01122223333334444445555555556554431 10100000
Q ss_pred ----CeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHH-HHhHHHHHHHHHHHHHHHHHhhh--h-
Q 015223 241 ----NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRI-GFGLFLATFSMISAALMEKKRRD--S- 312 (411)
Q Consensus 241 ----g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~-~~G~~l~~l~~~~~~~~~~~~~~--~- 312 (411)
|... ..+-..+|.+...+..-++.++ .||. ...++. .++.++.++|++...++.....+ .
T Consensus 299 ~y~~gvr~-G~~~l~~~s~~~~i~s~~l~~l----~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~ 366 (477)
T TIGR01301 299 KYDDGVRA-GAFGLMLNSVVLGITSIGMEKL----CRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY 366 (477)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 1000 1222334444433333333333 3332 111222 78888999999988877531110 0
Q ss_pred cccCC---Cccc-hHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhhh--hHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 313 ALDSG---KTLS-IFSITPQFLIFGLSEMFTA-VGLIEFFYKQSLK--GMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 313 ~~~~~---~~~s-~~~li~~~~l~~ige~l~~-~~~~~~~~~~aP~--~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
...++ .+.. .+..+..+.+.|++-.... ++- +++.+..|+ +.+|.+||+.+++..+.+.+.++..+.+...
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf-al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~ 444 (477)
T TIGR01301 367 DGDGESLPPPTGIKASALIVFAILGIPLAITYSIPF-ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQL 444 (477)
T ss_pred cccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhH-HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0112 3556677788888888887 555 799999995 5669999999999999999999887775443
No 78
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.90 E-value=2.8e-07 Score=93.43 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhh-hhccccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW-VQTHSGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~-l~~~~g~~~~F~i 93 (411)
+...+++.+.+.+++.|...|.....+.|.+++++ |++++++++.+.++|..+++.+.++ +.++.+||..|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 35566788889999999999999999999998655 7999999999999999999887775 4455799999999
Q ss_pred HHHHHHHHHHHH
Q 015223 94 SAAAMALGLFGV 105 (411)
Q Consensus 94 ~~~~~~l~~i~~ 105 (411)
.++..++..+..
T Consensus 191 ~~~~~~i~~~~~ 202 (438)
T TIGR00712 191 PAICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHHH
Confidence 877665544433
No 79
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.88 E-value=5.3e-07 Score=90.22 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~ 92 (411)
.+.+.+++...+.++..+...|...+++.|.+++++ |.++.++..++.++|..+++.+++++.+. +||+..|+
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 345556666666788899999999999999987654 79999999999999999999999998885 59999999
Q ss_pred HHHHHHHHHHH
Q 015223 93 VSAAAMALGLF 103 (411)
Q Consensus 93 i~~~~~~l~~i 103 (411)
+.++...+..+
T Consensus 166 i~a~~~l~~~l 176 (402)
T PRK11902 166 LMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHH
Confidence 88766554433
No 80
>PRK09848 glucuronide transporter; Provisional
Probab=98.87 E-value=4.9e-07 Score=91.87 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=77.6
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
+..++..|+.+++.+++. ..+.+.+|.++.+++++.+.+.. ..+.+++....++.++
T Consensus 275 ~~~~~~~~l~~~l~~r~g-----------~~~~~~~g~~~~~i~~~~~~~~~------------~~~~~~~~~~~~l~g~ 331 (448)
T PRK09848 275 VGTVASAPLVPGMVARIG-----------KKNTFLIGALLGTCGYLLFFWVS------------VWSLPVALVALAIASI 331 (448)
T ss_pred HHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHcC------------chhHHHHHHHHHHHHH
Confidence 445556676666554332 23446778888888777665431 2356666677889999
Q ss_pred HHHHHhhHHHHHHHHHhhhh-------HHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 335 SEMFTAVGLIEFFYKQSLKG-------MQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP~~-------~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
|+.+..+...++..+.+|++ .+|.++|++++.+.+|..+|+.+.+.+-
T Consensus 332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888999988865 4699999999999999999999887653
No 81
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.86 E-value=2e-07 Score=94.21 Aligned_cols=269 Identities=13% Similarity=0.014 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-------cc
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-------GM 87 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-------g~ 87 (411)
....+.+...+..++...+.....++..|..+++++ |.+..++.....++|.++...+.+.+.+.. +|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 334456677777999999999999999999987553 677888888888888876666665543221 68
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccc
Q 015223 88 DVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQR 167 (411)
Q Consensus 88 ~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
++.+.+.++...++.++.....|+-.++.++.++.
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~--------------------------------------------- 211 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK--------------------------------------------- 211 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeeccccccccccc---------------------------------------------
Confidence 88877777666655555555444300000000000
Q ss_pred hhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc
Q 015223 168 FRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA 247 (411)
Q Consensus 168 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~ 247 (411)
.++.+..+ .++ ++++ .. .++......+.......+...+..+. .++ .+-..+
T Consensus 212 ~~~~~~~~--------------~~~-----~nr~-~~---~l~~~~~~~~~~~~~~~~~~~y~~~~---vl~--~~~~~~ 263 (428)
T PF13347_consen 212 ISLRDSLR--------------SLF-----RNRP-FR---ILLLAFFLQWLAFALMNTFLPYYFTY---VLG--NEGLIS 263 (428)
T ss_pred cccccchh--------------hhc-----ccch-HH---HHHHHHHHHHhhhhhhhhHHHHHHHH---Hhc--CchhhH
Confidence 00000000 000 1221 11 22222233333333222222221111 111 010123
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
.+..+..+..++..|+..++.+++++|+ -+..|.++.+++.++..+.. +.+.+++.+
T Consensus 264 ~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i 320 (428)
T PF13347_consen 264 IFMLIFFVASIVGSPLWGRLSKRFGKKK-----------VYIIGLLLAALGFLLLFFLG------------PGSPWLVLI 320 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccee-----------ehhhhHHHHHHHHHHHHHHH------------hhhHHHHHH
Confidence 3344555667778888887776655442 25678888888888877763 247888888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
..++.+++-...+....++..+..+ ++..|.++|++.+..-+|..+++.+.+.+-..
T Consensus 321 ~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 321 LFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred HHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988666678888777 45689999999999999999999888866443
No 82
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.85 E-value=8.2e-08 Score=93.96 Aligned_cols=284 Identities=13% Similarity=0.062 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHH--hhhhccccchhHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL--VWVQTHSGMDVGFG 92 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~--g~l~~~~g~~~~F~ 92 (411)
+.+.+.+-..+.+.-.|.--|.....++..|++++ |++..++...+-|+|..+.|.++ +++..+.+|+.+|+
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 67778888888999999999999999999999755 89999999999999999999999 99999999999999
Q ss_pred HHHHHHH-HHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhh
Q 015223 93 VSAAAMA-LGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFL 171 (411)
Q Consensus 93 i~~~~~~-l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (411)
++++..+ ++++.+... ++ .|+..-+.++- ++.+++.+.++.++ ..+.++.-
T Consensus 190 ~pgiiaiival~~~~~~----rd-~Pqs~GLP~ie------------~~~~d~~e~~~~~~-----------~~~~ls~~ 241 (448)
T COG2271 190 FPGIIAIIVALILLFLL----RD-RPQSEGLPPIE------------EYRGDPLEIYEEEK-----------ENEGLTAW 241 (448)
T ss_pred HHHHHHHHHHHHHHHHh----CC-CccccCCCCHH------------HhhcCchhhhhhhc-----------cCCCccHH
Confidence 9986544 333333333 22 34432222210 00111111110000 00000000
Q ss_pred hhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHH--hhhhHHHHHHHHhhcccCCCCeeeCCccc
Q 015223 172 DKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTIL--AQLQTFSVQQGSAMNNKLTKNFHVPPASL 249 (411)
Q Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~--~q~~s~~~~~~~~~~~~~g~g~~i~~~~l 249 (411)
+... +-|-..|.++. +.+....+|..=| .++.+.|+.+.++++. ....+.
T Consensus 242 ~i~~-------------------~YVL~Nk~iW~--la~a~vfvYivR~gi~dW~p~YL~e~k~~s~-------~~a~~a 293 (448)
T COG2271 242 QIFV-------------------KYVLKNKLIWL--LALANVFVYVVRYGINDWGPLYLSEVKGFSL-------VKANWA 293 (448)
T ss_pred HHHH-------------------HHHHcChHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCH-------HHHHHH
Confidence 0000 00111111111 1111112222212 3566788887665543 223333
Q ss_pred cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhH-HHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL-FLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
.++-...-+...-+.+++.+++.+.++ .+. ++.. ++..+++...... + ..+.+ +..
T Consensus 294 ~~lfE~agl~G~Ll~GwlSDklfkgrR-------~p~--~~i~~~~i~~~~~~~w~~--------~----~~~~~--l~~ 350 (448)
T COG2271 294 ISLFEVAGLPGTLLAGWLSDKLFKGRR-------GPM--ALIFMLLITASLVLYWLA--------P----NGSYL--LDA 350 (448)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-------chH--HHHHHHHHHHHHHHHHcC--------C----CccHH--HHH
Confidence 444445566666677888888875432 111 2221 2222222222221 1 12222 222
Q ss_pred HHHHHHHHHHHhhHHH--HHHHHHhhhhHHHHHHHHHHHHHhH-HHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTAVGLI--EFFYKQSLKGMQAFLTAMTYCSYSF-GFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~--~~~~~~aP~~~~g~~~g~~~l~~~~-G~~lg~~l~~~~~~ 383 (411)
-.+..+|-.+.-|.+. ..+.+.+||+.-|.+.|+..++.-+ |..++....+.+..
T Consensus 351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d 408 (448)
T COG2271 351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD 408 (448)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence 3444555555433321 2466789999999999999988877 88888777776633
No 83
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.81 E-value=1.8e-06 Score=89.17 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc------------
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT------------ 83 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~------------ 83 (411)
...++++++++++|.|+..|....++.+.+|++. |+++.++.+...++|.++++.++.++..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 5688999999999999999999999999999755 8999999999999999999988876531
Q ss_pred -----------cccchhHHHHHHHHHHHH
Q 015223 84 -----------HSGMDVGFGVSAAAMALG 101 (411)
Q Consensus 84 -----------~~g~~~~F~i~~~~~~l~ 101 (411)
.++||+.|.+.++..++.
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHH
Confidence 247999998776554443
No 84
>PRK10133 L-fucose transporter; Provisional
Probab=98.79 E-value=7.8e-07 Score=90.30 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=51.9
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 82 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~ 82 (411)
..+...++++++++++|.|...+..++++.|..++++ |....+++.....+|..+|+.+++.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999998644322 455688888888999999998887654
No 85
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1e-07 Score=92.40 Aligned_cols=93 Identities=24% Similarity=0.139 Sum_probs=82.5
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
..+.++++++|.++++|.+....+..++++|.|+++.. |++++++.-..+.+|.++||..+|.+-|..|++..|+
T Consensus 156 g~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFl 230 (464)
T KOG3764|consen 156 GNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFL 230 (464)
T ss_pred cchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHH
Confidence 45678999999999999999999999999999998663 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc
Q 015223 93 VSAAAMALGLFGVVSGTL 110 (411)
Q Consensus 93 i~~~~~~l~~i~~~~~~~ 110 (411)
+.+..+++...+-++..+
T Consensus 231 VL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 231 VLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHHHHheeC
Confidence 999887777665555433
No 86
>PRK09669 putative symporter YagG; Provisional
Probab=98.79 E-value=1.4e-06 Score=88.47 Aligned_cols=106 Identities=9% Similarity=0.154 Sum_probs=70.4
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
+..++..|+.+++.+++.+| +.+..+.++.+++.+...+.. +.+.+.+++..++.++
T Consensus 275 i~~ii~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~g~ 331 (444)
T PRK09669 275 IAGLFGALLSERLLGKFDRV-----------RAFKWTIVAFVILSALIFFIP------------PSNVWLIFALNILFNF 331 (444)
T ss_pred HHHHHHHHHHHHHHHHhChH-----------HHHHHHHHHHHHHHHHHHHhC------------cchHHHHHHHHHHHHH
Confidence 44455666767766554433 223445544443333333221 1245556666789999
Q ss_pred HHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 335 SEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++....+...+++.+.+| ++..|...|++.+...+|+.+|+.+++.+-.
T Consensus 332 ~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 332 IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888889988886 4557888999999999999999888886533
No 87
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.76 E-value=8.8e-08 Score=98.06 Aligned_cols=290 Identities=14% Similarity=0.096 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
.....+.+.+.+++.+...+...++..|..+ ++++ .+....++.|...++|.++|+.++|++.++++|+..|++.+
T Consensus 120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a 195 (468)
T TIGR00788 120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITA 195 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 3444457888999999999999999999998 4432 25668889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhhh
Q 015223 96 AAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKAC 175 (411)
Q Consensus 96 ~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 175 (411)
+..++..+...+.++.-....|+.. .+.. . +. ..... ...+..+
T Consensus 196 ~l~ll~~~~~~~~~E~~~~~~~~~~--~~~~----------------~----~~----------~~~~~----~~~~~~~ 239 (468)
T TIGR00788 196 ALLLLQLFVSNLSKERRAFVRPRIG--TYLE----------------M----NM----------ALLTL----GVLANVK 239 (468)
T ss_pred HHHHHHHHHHHhccccccccccccc--ccch----------------h----hh----------hhhhh----hHHHHHH
Confidence 7766553333322111000001100 0000 0 00 00000 0000000
Q ss_pred hhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHH-HHHHHhhhhHHHHHHHHhhcccCCCCeeeCC---ccccc
Q 015223 176 IKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTII-FNTILAQLQTFSVQQGSAMNNKLTKNFHVPP---ASLQS 251 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~-~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~---~~l~~ 251 (411)
.... ..++ .-.++.+.+.+.+ ... |........+.+..+. ..+| .++ +.+..
T Consensus 240 ~~~~-------~l~~------~l~~~~i~~~l~f---ifl~~~~~~~~~~~~f~~~~----~~lG----~s~~~~G~~~~ 295 (468)
T TIGR00788 240 VQIL-------GLRG------AIQLLEIAKPLIF---IFLSYANLPGASGSVFCATT----QCLP----GGPSFSGMSKV 295 (468)
T ss_pred HHHH-------HHHH------HHhcHHHHHHHHH---HHHHHhhcCCCCceeEEEEc----ccCC----CCcchhhhHHH
Confidence 0000 0000 0001122221111 111 1111111111111100 1122 222 23344
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLI 331 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l 331 (411)
...+..++.+.+.+++. +| .+..+-+.++.++.+++.+....... |-+. ..+ ..+.++.....++
T Consensus 296 ~~~v~~i~g~~~~~~~~----~~-------~~~r~~l~~~~~l~~~~~~~~~~l~~-~~~~--~~g-i~~~~~~~~~~~l 360 (468)
T TIGR00788 296 VGNLGSLCGVGGYDRFL----KT-------FPYRLLFGVTTLLYTLSSLFDLILVK-RWNL--AFG-ISDEVFVLGDSII 360 (468)
T ss_pred HHHHHHHHHHHHHHHHH----hh-------CCHHHHHHHHHHHHHHHHhCceeeee-cccc--ccC-CCCeeeeeehhHH
Confidence 44455666666666553 33 24444467777777776655432210 1110 001 0123345555678
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 332 FGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 332 ~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
.+++..+...+...++.+.+|++.+|...|+.....++|+.+++.+++.+...
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~ 413 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET 413 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877789999999999999999999999999999999888877654
No 88
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.75 E-value=5.1e-07 Score=88.54 Aligned_cols=76 Identities=18% Similarity=0.092 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc----------c
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT----------H 84 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~----------~ 84 (411)
+.+.+++++++++++.+.. +...++++|.+++++ |.++.+++....++|..+++.+++.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5677888999999997765 557889999998644 7889999998889999888888876654 3
Q ss_pred ccchhHH-HHHHHH
Q 015223 85 SGMDVGF-GVSAAA 97 (411)
Q Consensus 85 ~g~~~~F-~i~~~~ 97 (411)
.+|++.| .+.++.
T Consensus 163 ~~w~~~~~~~~~~~ 176 (366)
T TIGR00886 163 LAWGWAFVIVPAGI 176 (366)
T ss_pred ccccchhHHHHHHH
Confidence 4899999 443433
No 89
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.73 E-value=2e-06 Score=89.44 Aligned_cols=320 Identities=11% Similarity=-0.038 Sum_probs=167.8
Q ss_pred ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223 11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG 90 (411)
Q Consensus 11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~ 90 (411)
+...+...+..|..+.++|.|... .....++|..+.+. |..++.+..+..-+....|+.++..+..+.+|||.
T Consensus 126 atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 126 ATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred hcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 345567788999999999987765 45666899987533 55556555555545555677777666667899999
Q ss_pred HHHHHHHHHHHHHHHhhccccee--ccCCCCCcc------hhHHHHHHHHHHhhcccCCCC-Cc-cccccCCCCCCCCCC
Q 015223 91 FGVSAAAMALGLFGVVSGTLYYR--NKRPQGSIF------TPIAQVFVAAMLKRKQICPSN-PQ-MLHGLNQNNVPNDSG 160 (411)
Q Consensus 91 F~i~~~~~~l~~i~~~~~~~~~~--~~~p~~~~~------~~~~~v~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 160 (411)
|++..+...++++..++.++.-. +.+.++.+. .|..+.+...........+.. .. .-+.|.
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~--------- 269 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWK--------- 269 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCC---------
Confidence 99999888887765544332111 111111111 234555544444322211111 00 011222
Q ss_pred ccccccchhh--hhhhhhhhcc--CC-C---CCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 015223 161 SVFLTQRFRF--LDKACIKVED--GT-N---KKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGS 232 (411)
Q Consensus 161 ~~~~~~~~~~--l~~a~~~~~~--~~-~---~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~ 232 (411)
......- +..+..+.+. +. . +-..+++++ +|++. +.. ..+...++-+.|......|.++..
T Consensus 270 ---Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf-----~~~r~-~~~--~lvi~fi~G~~~~s~~~l~p~~~~ 338 (599)
T PF06609_consen 270 ---SAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLF-----KDRRG-FAA--LLVISFISGMNFFSVNILWPQQVV 338 (599)
T ss_pred ---CccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHh-----ccchH-HHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 1111111110 00 0 011233333 22222 211 112222233334444345555544
Q ss_pred hhccc-CCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhh
Q 015223 233 AMNNK-LTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRD 311 (411)
Q Consensus 233 ~~~~~-~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~ 311 (411)
++-.+ .. +. ....++.....+...+.+.+++.+..+. || ....+.+|.++..+++..++...
T Consensus 339 ~vf~~d~~-~~-~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~---------~Kw~li~~~~~~ta~~Gama~~~----- 401 (599)
T PF06609_consen 339 NVFGSDPI-SI-TEIGWISSPVGFGSCAGAVILGLLFSKI-RH---------IKWQLIFGSVLMTAFCGAMAAVR----- 401 (599)
T ss_pred hhccCCCc-cc-ceeehhhhhHHHHHHHHHHHHHHHHHHc-cc---------hhHHHHHHHHHHHHHHHHHHHcc-----
Confidence 33211 10 11 1233444555566666666666655332 22 23446678777776666666543
Q ss_pred hcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 312 SALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 312 ~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+++ .+.+| ..-++.++|-..+....+..+.-.+|++..|.++|+....+.+|+.+|..+...+
T Consensus 402 --~~n---~~~~i--~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 402 --PDN---KNAAI--AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred --CCC---cchHH--HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 22222 2235777777777755556666679999999999999999999999999877643
No 90
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.70 E-value=7.7e-06 Score=81.37 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhh-hHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~-~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
....++.+++..+..+..+....+..++ +.+|..+++.+...++|..+|+.+.+.+..
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455566677777777777888876 899999999999999999999999887654
No 91
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.65 E-value=4e-06 Score=85.95 Aligned_cols=115 Identities=10% Similarity=0.019 Sum_probs=77.0
Q ss_pred ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
+..++.+..++..|+.+++.+++.+| +.+.++.++.+++.+.....-. .. +.+.++++..
T Consensus 271 ~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~i~ 330 (473)
T PRK10429 271 YLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPVLSCGVLLLMGL-----AA----PHNALLIVIA 330 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHhc-----cC----chhHHHHHHH
Confidence 34455566677777777766544433 2244566655555554433210 00 1245556666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhh-------hhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSL-------KGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP-------~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++.++++....+...++..+.+| ++..|.+.|.+.+..-+|..+|+.+.+.+-.
T Consensus 331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999998777788999888 5667889999999999999999888887643
No 92
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.64 E-value=2.6e-06 Score=87.36 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc---------cc
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT---------HS 85 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~---------~~ 85 (411)
+...+++.+++++++.+...+ ....+.+.+++++ |+.+.++.+...|+|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 456777888999999887644 4567889997644 7999999998889988888777765532 25
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 015223 86 GMDVGFGVSAAAMALGLFG 104 (411)
Q Consensus 86 g~~~~F~i~~~~~~l~~i~ 104 (411)
|||+.|.+.++..++..+.
T Consensus 196 gWr~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGIL 214 (476)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8999999887665544333
No 93
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.63 E-value=4e-06 Score=84.53 Aligned_cols=116 Identities=13% Similarity=0.106 Sum_probs=81.5
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+...+++.+..++...+.+++.+++.+| +-+.++.++.++++........ . ..+.+.++
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l~~~~~~---------~-~~~~~~l~ 312 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGFFAYGDP---------E-YFGYALLF 312 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHcCc---------c-hhhHHHHH
Confidence 3345555666666666677766554433 3356777777777655554210 0 11234455
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH-HHHhHHHHHHhHhhhhhcc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY-CSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~-l~~~~G~~lg~~l~~~~~~ 383 (411)
...++.++++.+..+....++.+..|++.||.++|+.+ ...++|+.+|+.+.+.+..
T Consensus 313 l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~ 370 (418)
T TIGR00889 313 LSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE 370 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66789999999988887789999999999999999997 5688999999999987644
No 94
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.61 E-value=1.4e-05 Score=78.49 Aligned_cols=274 Identities=13% Similarity=0.121 Sum_probs=152.9
Q ss_pred ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223 11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG 90 (411)
Q Consensus 11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~ 90 (411)
+.........++.++.++|.+.-.....++..|..+|++ |.++-++.|...-+|..++..+.|.+-+.++..-.
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL 157 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERL 157 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 444455666777778888889999999999999998755 89999999999999999999999988776664332
Q ss_pred HHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh
Q 015223 91 FGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF 170 (411)
Q Consensus 91 F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (411)
.-+.-...++.+++-+.... +.||+.++.. ..+ +.+...+
T Consensus 158 ~~v~~~~a~i~~~l~~ia~w---g~E~r~~~~~---------------~~~----------------------~~~~~~f 197 (403)
T PF03209_consen 158 IQVIQGVALIALLLNLIALW---GQEPRRSRRA---------------AAA----------------------ERPRPPF 197 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcccCCcccc---------------cCC----------------------CCCCccH
Confidence 22222111112221111111 1122211100 000 0000111
Q ss_pred hhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCC--eeeCCcc
Q 015223 171 LDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKN--FHVPPAS 248 (411)
Q Consensus 171 l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g--~~i~~~~ 248 (411)
.+...... .+ .+.++++.+ +++...-| . .|.--+.+ .+ | |.++++.
T Consensus 198 ~~a~~~~~---------------~~--~~a~~f~~f--l~l~t~a~----~-------~QD~iLEP-yg-g~Vfgmsv~e 245 (403)
T PF03209_consen 198 REAWRQVW---------------AS--PQARRFFVF--LFLGTLAF----F-------MQDVILEP-YG-GEVFGMSVGE 245 (403)
T ss_pred HHHHHHHH---------------hC--CChhHHHHH--HHHHHHHH----H-------hhHHHcCC-ch-hHHcCCCHHH
Confidence 11111110 01 112222211 11111111 1 11111111 12 1 3455554
Q ss_pred ccchhH---HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 249 LQSIPY---IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 249 l~~in~---l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
-..+|. ...++...+.+++.. +|. .+.+.-..|..+.++++........ .-+.+-+
T Consensus 246 TT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~~-----------~~~~~~~ 304 (403)
T PF03209_consen 246 TTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAGP-----------LGSPWLF 304 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHHh-----------cccchHH
Confidence 333333 334454445555443 221 1112223566666666655444321 1256667
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.+..+++|+|-.+...+..+...+.++++..|.++|.|...++++.-+|..+++...-
T Consensus 305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999988887777777776543
No 95
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.57 E-value=2.2e-05 Score=78.95 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc---------
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT--------- 83 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~--------- 83 (411)
..+.+.+++++++.++|.|...+..++.+.+..++++ |.+..++.....++|..+||.+++.+..
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 3467888999999999999999999999998876543 5777899999999999999999987742
Q ss_pred -----------------cccchhHHHHHHHHHHH
Q 015223 84 -----------------HSGMDVGFGVSAAAMAL 100 (411)
Q Consensus 84 -----------------~~g~~~~F~i~~~~~~l 100 (411)
..+||+.|++.++..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~ 198 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA 198 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24699999877754443
No 96
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.45 E-value=7.8e-06 Score=86.77 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc---------
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS--------- 85 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~--------- 85 (411)
...+++++++++++|.+...|...+++.|.+++++ |..++++++.+.++|..+|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35678899999999999999999999999998755 799999999999999999999999987643
Q ss_pred -------------cchhHHHHHHHHHHHHHHHHhhc
Q 015223 86 -------------GMDVGFGVSAAAMALGLFGVVSG 108 (411)
Q Consensus 86 -------------g~~~~F~i~~~~~~l~~i~~~~~ 108 (411)
+|+.+|++.++..++..+.++..
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 27888988887666655544443
No 97
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.44 E-value=6.6e-06 Score=79.66 Aligned_cols=71 Identities=7% Similarity=0.038 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccccCCCCCCCC
Q 015223 323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGWL 394 (411)
Q Consensus 323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~~~~~~~w~ 394 (411)
..+.....+.++.-....+.+..++.+..|++.||..+|+.....+++.++||++.+....++ ++++..|+
T Consensus 353 ~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws-~~~~~a~~ 423 (451)
T KOG2615|consen 353 VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS-QGAQPAYI 423 (451)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe-cCCCceee
Confidence 345566788899999999999999999999999999999999999999999999998766654 33444443
No 98
>PRK11462 putative transporter; Provisional
Probab=98.40 E-value=0.00013 Score=74.59 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-------ccchh
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-------SGMDV 89 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-------~g~~~ 89 (411)
..+++...+..++.-.+.....++..+..++.+ | |.+..++.....++|.++++.+...+.+. .+|+.
T Consensus 110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~--e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~ 184 (460)
T PRK11462 110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPT--Q---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG 184 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 334445555678888888889999999987644 2 78899999999999988887776544332 24666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015223 90 GFGVSAAAMALGLFGVV 106 (411)
Q Consensus 90 ~F~i~~~~~~l~~i~~~ 106 (411)
...+.++...++..+..
T Consensus 185 ~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 185 GIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55554444444433333
No 99
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.35 E-value=7.1e-05 Score=76.03 Aligned_cols=87 Identities=14% Similarity=0.022 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-----c-----
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-----T----- 83 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-----~----- 83 (411)
.+...+++.+++.+++ |...+.....+.+.|++++ |+++++++....|+|..+++.+.+.+. .
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~ 198 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVN 198 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999998 6677889999999998654 799999998888888887777666533 2
Q ss_pred --------cccchhHHHHHHHHHHHHHHHHhh
Q 015223 84 --------HSGMDVGFGVSAAAMALGLFGVVS 107 (411)
Q Consensus 84 --------~~g~~~~F~i~~~~~~l~~i~~~~ 107 (411)
..+|+.++.+-.+..++..+.+++
T Consensus 199 ~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 199 GVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234666665555555555444444
No 100
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.13 E-value=6.3e-05 Score=75.64 Aligned_cols=109 Identities=12% Similarity=0.051 Sum_probs=87.9
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
++.+...+...+..++.+++.+++++|+ -+..++++.+++.+..++. .+.+++..
T Consensus 47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~ 101 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNIMLAIIGARR-----------WIAGIMVLWGIASTATMFA--------------TGPESLYL 101 (412)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhChHH-----------HHHHHHHHHHHHHHHHHHh--------------cCHHHHHH
Confidence 3455555666777888888887666552 2577888888888887764 25777888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
..++.|++|....+....++.+..|++.||.++|+++...++|..+++.+++..
T Consensus 102 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 155 (412)
T TIGR02332 102 LRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI 155 (412)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988888899999999999999999999999999998887654
No 101
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.05 E-value=9.8e-05 Score=73.05 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=91.1
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.++..+...+..|+.+.+.+++++|+ -+.++.++.+++.+...+. .+.+.+
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l 103 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRRL-----------PMVTSIVLFSAGTLACGFA--------------PGYITM 103 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence 345667777888899999999988776552 2466777777777766654 256677
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
....++.|+++....+....++.+..|++.|+.++|+.....++|..+++.+...+..
T Consensus 104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999998888999999999999999999999999999999988776543
No 102
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.01 E-value=0.00016 Score=71.11 Aligned_cols=87 Identities=16% Similarity=0.046 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc---chhHHHH
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGV 93 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g---~~~~F~i 93 (411)
+.+++.-++.+++.|-+ ....+.+...||+++ .+.+.+++. ..|+|..+..+++|++....+ |+.+-.+
T Consensus 106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56777777788877664 566688899999866 699999999 999999999999999999999 9998888
Q ss_pred HHHHHHHHHHHHhhcccc
Q 015223 94 SAAAMALGLFGVVSGTLY 111 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~ 111 (411)
..+.+.++.+.+.+..+.
T Consensus 178 ~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 178 YVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 888888877777776553
No 103
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.01 E-value=0.00013 Score=72.96 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=85.3
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
....+...+..|+.+++.+++.+|+ -+..+.++.+++++..... .+.+++....+
T Consensus 53 ~~~~l~~~~~~~~~G~l~dr~g~k~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~ 107 (400)
T PRK11646 53 GLRQFIQQGLGIFGGAIADRFGAKP-----------MIVTGMLMRAAGFATMAIA--------------HEPWLLWLSCI 107 (400)
T ss_pred HHHHHHHHHHHhhhhHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHH
Confidence 3334555666788888887665442 2567888888888777653 25777888889
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
++++++.+..++..+.+.+..|++.|+.++|+......+|..+|+.+++.+.
T Consensus 108 l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 108 LSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888889999999999999999999999999999998887664
No 104
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.99 E-value=0.00023 Score=73.35 Aligned_cols=113 Identities=9% Similarity=-0.028 Sum_probs=91.6
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+|..+...+...+..|+.+++.+++++|+ -+..|.++.+++.++.+.. .+.+.+
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-----------~l~~~~~~~~~~~~~~~~a--------------~~~~~l 97 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGALGDRIGFKR-----------LLMLGGTLFGLASLAAAFS--------------PTASWL 97 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHHc--------------CCHHHH
Confidence 456666777777888999999988776553 2577888888888877764 367788
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH-hhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQ-SLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~-aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+...+++|+|.....+.....+.+. .|++.|+.++|++.....+|..+|+.+++.+..
T Consensus 98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8889999999999888776767666 588999999999999999999999999887754
No 105
>PRK03545 putative arabinose transporter; Provisional
Probab=97.98 E-value=0.0001 Score=73.32 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=86.5
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.+...+...+..++.+.+.++..+| +-+..+.++.+++.+..... .+++++.
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~ 101 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLLTSNVERR-----------KLLIGLFVLFIASHVLSALA--------------WNFTVLL 101 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChH-----------HHHHHHHHHHHHHHHHHHHh--------------ccHHHHH
Confidence 3445556666667777777776555443 33567888888887777664 3677788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...+++|+++....+....++.+..|++.|+.++|++....++|..+|+.+++...
T Consensus 102 ~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 102 ISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88899999999888887789999999999999999999999999999988887653
No 106
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.98 E-value=0.0018 Score=62.87 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~i 93 (411)
..+.++.+-++.+.|.+.......+++-+.|+++ .+...+.|..+.++|+.+++.+...+.++. ||+.....
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5678888999999999999999999999999853 477899999999999999999999999887 79987776
Q ss_pred HHHHHHHHHHHHh
Q 015223 94 SAAAMALGLFGVV 106 (411)
Q Consensus 94 ~~~~~~l~~i~~~ 106 (411)
=+...++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6655555555444
No 107
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.96 E-value=0.00025 Score=70.69 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=86.7
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+..++..++.+++.+++.+|+ -+..+.++.+++.+..... .+.+++
T Consensus 52 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 106 (406)
T PRK11551 52 MGWAFSAGILGLLPGALLGGRLADRIGRKR-----------ILIVSVALFGLFSLATAQA--------------WDFPSL 106 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence 345667777778888899999887766542 2456777776766655543 357778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+...++.+++.....+...+.+.+..|++.|+.++|+.+....+|..+++.+....
T Consensus 107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 107 LVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999888888999999999999999999999999988888776443
No 108
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0012 Score=67.87 Aligned_cols=89 Identities=12% Similarity=-0.000 Sum_probs=75.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh------cccc
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ------THSG 86 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~------~~~g 86 (411)
-.+.+.+.+-++++|+-.+..-|+....++..|++++ |..-++++|...++|..+|.+++..+. ...|
T Consensus 131 ~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 131 VHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred HhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 4567888899999999999999999999999999755 788999999999999999999998863 3589
Q ss_pred chhHHHHHHHHHHHHHHHHhh
Q 015223 87 MDVGFGVSAAAMALGLFGVVS 107 (411)
Q Consensus 87 ~~~~F~i~~~~~~l~~i~~~~ 107 (411)
|+|.|.+.+++.++..++.++
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred ceeehhHHHHHHHHHHheEEE
Confidence 999999999766655444433
No 109
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.96 E-value=3e-05 Score=77.02 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=95.8
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+|+.-.+.-++..|+++.+-+++.|| .-|++|.++-.++.+..++.+ .+|.++
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~-----------~v~~vG~~iW~~Av~~~~fs~--------------~Fwq~~ 125 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRK-----------RVIAVGIFIWTLAVFASGFSN--------------HFWQVL 125 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcc-----------eEEeeHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 3455555566788899999887655443 346899999999999888763 466677
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
+.--+.|+||...+|...+++.+..|...|+.+++++++...+|..+|-..++.++..+
T Consensus 126 l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 126 LCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 88899999999999999999999999999999999999999999999999888887765
No 110
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.93 E-value=0.00018 Score=59.39 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=83.1
Q ss_pred cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223 250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF 329 (411)
Q Consensus 250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 329 (411)
.....+..++..|+.+++.++..+| +.+..+..+.+++.+..... .+.+++....
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 58 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRK-----------PVLLVGLFIFVLSTAMFALS--------------SNITVLIIAR 58 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchh-----------HHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHH
Confidence 3445567777888888877655433 22456666666666655543 2466677778
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
++.+++.....+....++.+..|++.|+..+|+.+....+|..+++.+.+...
T Consensus 59 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 99999999888888889999999999999999999999999999999888764
No 111
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.93 E-value=0.00067 Score=72.08 Aligned_cols=253 Identities=7% Similarity=-0.090 Sum_probs=171.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchh-----
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDV----- 89 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~----- 89 (411)
..+...+.++.++++.++.+++..++.+++.++.++ +++.+.+++|++..+.+.+. .+++..+.....-+.
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence 355566788889999999999999999999998764 26667999999999999865 555655554333222
Q ss_pred ---HHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCcccccc
Q 015223 90 ---GFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQ 166 (411)
Q Consensus 90 ---~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
-++..++.+++.++.++.....++..++++.+...+.++....+...+. +..+ .
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~----------------------~~~~-~ 213 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK----------------------RFST-R 213 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----------------------hhcc-C
Confidence 2335556666666677777666655555544333344443333221100 0000 0
Q ss_pred chhhhhhhhhhhccCCCCCCCCcccc--cchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeee
Q 015223 167 RFRFLDKACIKVEDGTNKKESPWRLC--TVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHV 244 (411)
Q Consensus 167 ~~~~l~~a~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i 244 (411)
+ . .+...|..+ ....+++.+.+.+++.++...+.+|+.+.|.......+..+++...+ .+..
T Consensus 214 -----~--------~--~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g 277 (654)
T TIGR00926 214 -----S--------E--HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGG 277 (654)
T ss_pred -----C--------c--ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCC
Confidence 0 0 000011111 22223567888889999999999999999987777777777887654 3434
Q ss_pred CCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc
Q 015223 245 PPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA 313 (411)
Q Consensus 245 ~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~ 313 (411)
.+...+.++++-.+++.++...+.+++.++.+++ -.+++++.-+.+.+.++++.+++.+....+.-
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556889999999999999888888999987541 34677889999999999999999998777664
No 112
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.92 E-value=0.00025 Score=72.33 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=92.7
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+..++..|+.+++.+++++|+ -+.+|.++.+++.++.+.. .+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l 93 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLAKRFGTRR-----------LFLISTFAFTLGSLLCGVA--------------PNLELM 93 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHhCc--------------CCHHHH
Confidence 456677778888899999999887766542 2567777777777766643 357778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+...+++|++.....+....++.+..|++.|+.++|++.....+|..+|+.+++.+..
T Consensus 94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 8889999999999998888999999999999999999999999999999988876643
No 113
>PRK10054 putative transporter; Provisional
Probab=97.92 E-value=0.00025 Score=70.88 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=85.1
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+...++..+..++..|+.+++.+++.+|+ -+.++.++.+++++...+.+ +.+..
T Consensus 45 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 99 (395)
T PRK10054 45 IGYAMTIALTIGVVFSLGFGILADKFDKKR-----------YMLLAITAFASGFIAIPLVN--------------NVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcch-----------hHHHHHHHHHHHHHHHHHHh--------------HHHHH
Confidence 345566666777888999999887766542 24677777778877776653 34444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+..+.+.+.+.....+.......+..|++.|+.++|+.+...++|..+|+.+++.+.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777667777788899999999999999999999999999998888764
No 114
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.89 E-value=4.5e-05 Score=63.02 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+.+.+.+.+++.+...+...+...|.+++++ |.+++++.+...++|..+++.+.+++.+..+|++.|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 45667778889999999999999999999998654 789999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHh
Q 015223 95 AAAMALGLFGVV 106 (411)
Q Consensus 95 ~~~~~l~~i~~~ 106 (411)
.+...++.+...
T Consensus 124 ~~~~~~~~~~~~ 135 (141)
T TIGR00880 124 AILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHh
Confidence 766555554443
No 115
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.89 E-value=0.0013 Score=65.73 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH-HHHHhHHHHHHhHhhhhhc
Q 015223 320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT-YCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~-~l~~~~G~~lg~~l~~~~~ 382 (411)
.+++++++...+.++--.+.-++..-++.+..|+++.++...+. .+..++|..+.+.+.+...
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly 373 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY 373 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 46888888889999988888889989999999999998887774 6888888888777777543
No 116
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.88 E-value=0.00043 Score=68.62 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=91.2
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+...+..|+.+++.++.++|+ .+..+.++.+++++..+.. .+.+.+
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l 97 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFNR-----------SYYLASLIFAAGCAGLGLM--------------VGFWSW 97 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence 355667777888888999999888777653 2567888888888776654 257777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+...++.|+++....+.....+.+..|++.|+..+|.+.....+|..+|+.+.+....
T Consensus 98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888999999999888776778889999999999999999999999999988887643
No 117
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.88 E-value=0.00032 Score=70.39 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=88.6
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+...++..+...+..|+.+++.+++++| +-+.++.++.+++.+..++.+ +.+++.
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~--------------~~~~l~ 110 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKFGRK-----------PLMMWSIVAYSVGTGLSGLAS--------------GVIMLT 110 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHh--------------HHHHHH
Confidence 4456677778888899999988766544 225678888888887776653 567778
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.|+|+....+....++.+..|++.|+.++|++....++|..+++.+...+
T Consensus 111 ~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 111 LSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 8889999999988888878999999999999999999999999999988776544
No 118
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.86 E-value=0.0051 Score=63.74 Aligned_cols=83 Identities=11% Similarity=-0.032 Sum_probs=71.7
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
..+.+.+.+.|.+.+++.++...+...+++|.++++. |..+.++ +.....|+.+++.+++|+.. +||+.++
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 4578899999999999999999999999999999755 8888888 88888899999999999987 8999999
Q ss_pred HHHHHHHHHHHH
Q 015223 93 VSAAAMALGLFG 104 (411)
Q Consensus 93 i~~~~~~l~~i~ 104 (411)
+..+..++.++.
T Consensus 239 ~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 239 IISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHH
Confidence 887665544444
No 119
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.86 E-value=0.00044 Score=69.12 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=89.7
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
...+...+...+..|+.+++.++..|| +-+..+.++.+++.+..... .+.+++..
T Consensus 59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~ 113 (394)
T PRK10213 59 QSVTVTAFVAMFASLFITQTIQATDRR-----------YVVILFAVLLTLSCLLVSFA--------------NSFSLLLI 113 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcH-----------HHHHHHHHHHHHHHHHHHHH--------------ChHHHHHH
Confidence 345667777888899998887665544 23567888888777766553 36778888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
..++++++.....+...+++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus 114 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 114 GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999988888999999999999999999999999999999998887654
No 120
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.00022 Score=70.47 Aligned_cols=114 Identities=15% Similarity=0.057 Sum_probs=95.4
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.++.++...+.+|++..+..++.||+ -+...+.+..+|-++.++. .+++.+
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~-----------lLl~~l~lFi~~n~l~alA--------------p~f~~L 104 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRLERRR-----------LLLGLLALFIVSNLLSALA--------------PSFAVL 104 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence 567889999999999999998886655442 2445666778888888875 378889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
+..-++.+++.........+.+.+.+||+.|+.++|+......++..+|.-++.++...
T Consensus 105 l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 105 LLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999977779999999999999999999999999999988888777653
No 121
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.85 E-value=0.013 Score=60.18 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 325 ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 325 li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
+.+.-++.|+...-.....=++..+.+|++..+.+.|++.++.-....+||.+.+.+...+
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334467888888888777789999999999999999999999999999999999987766
No 122
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.83 E-value=0.00051 Score=69.12 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=92.3
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+..++..|..+++.+|+++|+ -+.+|.++.+++.++...... ..+.+++
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-----------~~~~g~~l~~~g~~l~~~~~~-----------~~~~~~~ 97 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIFMKKLSYKA-----------GILLGLFLYALGAFLFWPAAE-----------IMNYTLF 97 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHHh-----------hccHHHH
Confidence 345677777888888999998887666543 357788888888777544321 1356777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+...++.++|..+..++.+.++.+..|++.++..+++.+...++|..+|+.+...+.
T Consensus 98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 98 LVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999888889999999999999999999999999999999988764
No 123
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.82 E-value=5e-05 Score=75.64 Aligned_cols=90 Identities=16% Similarity=0.021 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
....+++.++.++|.+...|...+...|.+++++ |++++++++...++|..+++.+.|++.++.||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4456677888999999888888888888776433 7999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhcccc
Q 015223 96 AAMALGLFGVVSGTLY 111 (411)
Q Consensus 96 ~~~~l~~i~~~~~~~~ 111 (411)
+..+++++.....+++
T Consensus 376 ~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 376 LAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHhccc
Confidence 7777776665554443
No 124
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.82 E-value=0.00056 Score=69.24 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=85.8
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.+...+...+..|+.+++.+++.+|+ -+.++.++.+++.+..+... +.+.+.
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~l~ 115 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNARY-----------FMGIGLIATGIINILFGFSS--------------SLWAFA 115 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCch-----------hHHHHHHHHHHHHHHHHHHh--------------HHHHHH
Confidence 34455666777888888888887665442 25778888888877666542 466666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.++++....+.....+.+..|++.||.++|+++...++|..+++.+.+.+
T Consensus 116 ~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 116 LLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999988888888999999999999999999999999999988766654
No 125
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.81 E-value=0.00043 Score=66.96 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=90.9
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+...+..|+.+.+.+++++|+ -+.++.++.+++.++..+. .+.+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~~ 88 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRR-----------VLIIGLLLFALGSLLLAFA--------------SNFWLL 88 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-----------HHHHHHHHHHHHHHHHHHH--------------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----------eEeehhhhhhhHHHHhhhh--------------hhHHHH
Confidence 345667777888899999999887766542 3577888888885555532 145578
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+...++.|+++....+....++.+..|++.|+.++|+.....++|..+|+.+++.+.
T Consensus 89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 89 LIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 888999999999999999999999999999999999999999999999999988775
No 126
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.78 E-value=0.00036 Score=68.62 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=89.1
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.+.+.+...+..|+.+++.+++.+| +-+..+.++.+++.+..... .+.++++
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 97 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRYGRR-----------PVLLLGLFIFALSSLGLALS--------------NNIETLL 97 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCCh-----------HHHHHHHHHHHHHHHHHHHH--------------ccHHHHH
Confidence 4556677777788888888887766543 22566777877877776654 2567778
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.++++....+...+++.+..|++.|+.++|+.+....+|..+|+.+++.+.
T Consensus 98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888899999999999999999999999999999988887654
No 127
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.77 E-value=0.00026 Score=69.24 Aligned_cols=111 Identities=12% Similarity=-0.031 Sum_probs=90.5
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+...+..|+.+++.+++.+|+ -+..+.++.+++.++.+.. .+.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 85 (399)
T TIGR00893 31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARK-----------TLAVFIVIWGVFTGLQAFA--------------GAYVSL 85 (399)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCcce-----------eeHHHHHHHHHHHHHHHHH--------------cCHHHH
Confidence 345677777888888999999888776553 1356777777777766654 267778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
....++.|++.....+....++.+..|++.|+..+|++.....+|..+++.+.+.+
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 141 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI 141 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 88899999999999988889999999999999999999999999999998887754
No 128
>TIGR00895 2A0115 benzoate transport.
Probab=97.73 E-value=0.00033 Score=68.93 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=86.7
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.++..+..++..++.+++.+++.+|+ -+..+.++.+++.++.... .+.++++
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 109 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRIGRKR-----------VLLWSILLFSVFTLLCALA--------------TNVTQLL 109 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHc--------------cchHHHH
Confidence 34555666667788888888887665442 2456777777776666543 2566677
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.+++.....+....++.+..|++.|+.++|+......+|..+++.+.+.+.
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 88899999999999888899999999999999999999999999999998887653
No 129
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.73 E-value=0.00036 Score=67.79 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=90.6
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.++..+..++..|+.+++.+++.+|+ -+..+.++.+++.+........ + ..+.+++.
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~ 96 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRKK-----------VMIGADLIRAVLVAVLPFVALL-----G----GLNIWQVY 96 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchhH-----------HHHHHHHHHHHHHHHHHHHHHc-----C----CCcHHHHH
Confidence 45566777888888999999888776542 2456666666666666555310 0 13677788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.++++.+..+...+++.+..|++.|+.++|.......+|..+|+.+++...
T Consensus 97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998899999999999999999999999999999988877653
No 130
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.71 E-value=0.00059 Score=67.72 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=89.2
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.++..+.+.+..++..|+.+++.++..+| +-+.++.++.+++.++.+.. .+.+++
T Consensus 40 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~l~~~~--------------~~~~~l 94 (382)
T PRK10091 40 AGHMISYYALGVVVGAPIIALFSSRYSLK-----------HILLFLVALCVIGNAMFTLS--------------SSYLML 94 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHccCccH-----------HHHHHHHHHHHHHHHHHHHh--------------CcHHHH
Confidence 34567777888889999999888665543 23567888888888777654 367788
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
....++.|+++....+.....+.+..|++.|+..+|++.....+|..+|+.+++.+.
T Consensus 95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 888999999999888777778899999999999999999888899888887776553
No 131
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.70 E-value=0.00039 Score=69.99 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=88.9
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.++..+...+..|+.+++.+++++|+ -+.++.++.+++.++...... ..+.+++
T Consensus 73 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-----------~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 130 (481)
T TIGR00879 73 WGLVVSIFLVGGFIGALFAGWLSDRFGRKK-----------SLLIIALLFVIGAILMGLAAF-----------ALSVEML 130 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHhcc-----------ccchHHH
Confidence 345566777778888999999887776552 256777777777777765421 2345567
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLV 378 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~ 378 (411)
+...+++|+|+....+....++.+..|++.|+.++++++....+|..+++.+.
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 78889999999999988889999999999999999999999999999999988
No 132
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.70 E-value=0.0013 Score=70.89 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=87.7
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.++..+..++..++.+++.++++||+ .+.+++++.+++.++.++. .+.++++
T Consensus 205 g~l~s~~~lG~iiG~li~G~LsDR~GRR~-----------~lii~lil~~i~~ll~afa--------------~s~~~ll 259 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGGLADKLGRKQ-----------CLLICLSVNGFFAFFSSFV--------------QGYGFFL 259 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHH--------------hhHHHHH
Confidence 45667777888888999999887776653 2456666666666666554 2567778
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.|+|.....+....++.+..|++.||..++++.....+|..+++.++..+
T Consensus 260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988889999999999999999999999999999988766544
No 133
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.68 E-value=0.00097 Score=65.19 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=82.6
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+...+..|+.+++.+++.+|+ .+.++.++.+++.++.+..+ .+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~i~~~~~~~~~-------------~~~~~~ 94 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPRY-----------TTTLSLLLLAIPCLWAGLAV-------------QSYSVL 94 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHh-------------hhHHHH
Confidence 355667777888888999999887766542 25678888888887777642 156677
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF 380 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~ 380 (411)
+...++++++.....+ ...++.+..|++.|+.+++++.....+|..+++.+...
T Consensus 95 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 95 LLLRLFIGIAGGSFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHHHHHhchhhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7788999999776544 45789999999999999999887777777666665543
No 134
>PRK10133 L-fucose transporter; Provisional
Probab=97.68 E-value=0.0013 Score=66.84 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=86.7
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.+...+...+.+|+.+++.+++++|+ -+..|.++.+++.++...... ..+++++.
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-----------~l~~g~~~~~~~~~l~~~~~~-----------a~~~~~ll 121 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKA-----------GIITGLFLYALGAALFWPAAE-----------IMNYTLFL 121 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHHh-----------cCCHHHHH
Confidence 34456666778888999998887776553 257788888888876532210 23677788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...+++|+|.....+..+.++.+..|++.+...+++.....++|..+|+.++..+
T Consensus 122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988888888887787777788999999999999998887643
No 135
>PRK10504 putative transporter; Provisional
Probab=97.68 E-value=0.00099 Score=67.95 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=85.4
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
++.+...+...+..|+.+++.+++.+|+ .+..+.++.+++.+..... .+.+.++.
T Consensus 49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~ 103 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGWLADRVGVRN-----------IFFTAIVLFTLGSLFCALS--------------GTLNELLL 103 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHH-----------HHHHHHHHHHHHHHHHHHh--------------CCHHHHHH
Confidence 4455555666788888888887776542 2355666666666654432 35667778
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
..+++|++.....+.....+.+..|++.++.+.|+......+|..+|+.+.+.+..
T Consensus 104 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 104 ARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 88999999999988888889999999999999999999999999999888876643
No 136
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0052 Score=62.21 Aligned_cols=269 Identities=12% Similarity=0.075 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-------cc
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-------SG 86 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-------~g 86 (411)
.+....++-..+.+++...+.--..++.+.+.++.+ | |.+..+|..+..++|.++...+.+.+... .|
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--E---R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g 184 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--E---RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG 184 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 344555566677888999999999999999998643 3 78899999999999988877766655432 34
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccceeccCCC-CCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccc
Q 015223 87 MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQ-GSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLT 165 (411)
Q Consensus 87 ~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (411)
|+..=.+-+ +++.+.+++..+..++ ++. ..+ .++ +
T Consensus 185 ~~~~~~~~~---vi~~i~~l~~~~~v~E-R~~~~~~--------------------~~~--------------------~ 220 (467)
T COG2211 185 YQGTALVLG---VIGVILLLFCFFNVKE-RVVETQP--------------------TKT--------------------G 220 (467)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHhhc-ccCcccc--------------------Ccc--------------------c
Confidence 443332222 3333333333332211 110 000 000 0
Q ss_pred cchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeC
Q 015223 166 QRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVP 245 (411)
Q Consensus 166 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~ 245 (411)
.+..+.+....+ + .++ .++. +.+..+.++..++...+.+++... ..++ .-+.-
T Consensus 221 ~~~~~~~~~~~~-------~------------~Nr-p~~~---~l~~~l~~~~~~~i~~s~~~yy~~---y~lg-~~~l~ 273 (467)
T COG2211 221 VKLKLKDSFLLI-------F------------KNR-PLLL---LLLMNLLLFIAFNIRGSIMVYYVT---YVLG-DPELF 273 (467)
T ss_pred ccccHHHHHHHH-------H------------ccc-hHHH---HHHHHHHHHHHHHHHhhhhheeEE---EEcC-ChHHH
Confidence 000111111000 0 111 1111 112233444444444444333221 1112 11111
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
+...........++..++..++.++++|| +-+..|.++..++.+...+.. ..+.++.
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~~~i~~~~~~f~~------------~~~~~l~ 330 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLLLAVGYLLLYFTP------------AGSVVLI 330 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHHHHHHHHHHHhhc------------CcchHHH
Confidence 22222222222333345544444444433 335778888888888888763 2356666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh-------hhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQS-------LKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~a-------P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+...++.++|-....+-..+++.+.+ -+|..|..-|...+.+=+|..+++.+.+.+
T Consensus 331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888887754445565554 456778888888888888888887666654
No 137
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.66 E-value=0.0017 Score=64.48 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=83.0
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.++..+...+..|+.+++.+++.+|+ -+..+.++.+++.+..... .+.++++
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 111 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKGRKI-----------MLLRSALGMGIVMVLMGLA--------------QNIWQFL 111 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcHH-----------HHHHHHHHHHHHHHHHHHH--------------hhHHHHH
Confidence 44566777778888999999887765442 2456777777776665543 2577777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.+++..+. +.....+.+..|++.|+.++|+......+|..+++.+.+.+.
T Consensus 112 ~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 166 (408)
T PRK09874 112 ILRALLGLLGGFV-PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166 (408)
T ss_pred HHHHHHHHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999887654 555578889999999999999999999999988888877653
No 138
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.62 E-value=0.0017 Score=66.53 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=86.4
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.+...+..++..|+.+++.+++.+|+ -+.++.++.+++.+...+. .+.+++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~ 112 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYGRRL-----------AMVISIVLFSVGTLACGFA--------------PGYWTLF 112 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHH--------------hHHHHHH
Confidence 34555566666777888888887665542 2466777777777777654 2567778
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.+++.....+....++.+..|++.|+.++|++.....+|+.+++.+...+
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 167 (496)
T PRK03893 113 IARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999998888888999999999999999999999999999998777654
No 139
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.62 E-value=0.017 Score=58.04 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=66.7
Q ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHH
Q 015223 283 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLS--IFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLT 360 (411)
Q Consensus 283 s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s--~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~ 360 (411)
+..+-+.++.+..++=+.+.+..+ + +.. +..+....+++|+.-.+...+...++.+.+|++.|+.++
T Consensus 271 g~~~ll~~a~~~~~vR~~l~a~~~--------~---~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q 339 (400)
T PF03825_consen 271 GIKWLLLLALVAYAVRWLLYAYFS--------D---PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQ 339 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--------C---CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 444556777777777777777652 0 111 112334456799999999988889999999999999999
Q ss_pred HHHHH-HHhHHHHHHhHhhhhhcc
Q 015223 361 AMTYC-SYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 361 g~~~l-~~~~G~~lg~~l~~~~~~ 383 (411)
|++.. ..++|..+|..+++.+..
T Consensus 340 ~l~~~~~~Glg~~iG~~igG~l~~ 363 (400)
T PF03825_consen 340 GLYSALSFGLGGAIGSLIGGWLYD 363 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99875 468999999988887644
No 140
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.60 E-value=0.0011 Score=67.37 Aligned_cols=90 Identities=19% Similarity=0.046 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.....+.+.+..+|.....-..-+++.+.-.+++.. |+.--++.|....+|++++..+.|++.++.+++..|.++
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 3445566777888999999999999999888765532 688889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhc
Q 015223 95 AAAMALGLFGVVSG 108 (411)
Q Consensus 95 ~~~~~l~~i~~~~~ 108 (411)
.+...+..+..++.
T Consensus 161 ~~~~~l~~~~~~~~ 174 (433)
T PF03092_consen 161 AALPLLMLIVALFL 174 (433)
T ss_pred HHHHHHHHHHHHHh
Confidence 76666555444443
No 141
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.60 E-value=0.01 Score=60.50 Aligned_cols=88 Identities=9% Similarity=-0.057 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHH-h-hhhccccchhHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVL-V-WVQTHSGMDVGF 91 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~-g-~l~~~~g~~~~F 91 (411)
....++.+++.+.++..|........++.+.-|++- |+..=...-+++++|.++|..++ + .+...-.|++.+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~ 187 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLL 187 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHH
Confidence 456789999999999999999999999998887644 89999999999999999996655 2 455666799999
Q ss_pred HHHHHHHHHHHHHHhh
Q 015223 92 GVSAAAMALGLFGVVS 107 (411)
Q Consensus 92 ~i~~~~~~l~~i~~~~ 107 (411)
..+.+..++.++...+
T Consensus 188 ~~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 188 AFPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9888766555554443
No 142
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.59 E-value=0.00069 Score=65.15 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=92.7
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.++..+...+...+..|+.+++.++..+|+ -+..+.++.+++.+..... .+.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 90 (352)
T cd06174 36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRR-----------VLLLGLLLFALGSLLLAFA--------------SSLWLL 90 (352)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCch-----------hhHHHHHHHHHHHHHHHHh--------------ccHHHH
Confidence 345566677778888999999887765542 2567888888888777664 256778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
....++.+++..+..+....+..+..|++.|+..+++......+|..+++.+.+.+..
T Consensus 91 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred HHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998888999999999999999999999999999999999887654
No 143
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.58 E-value=0.00022 Score=72.93 Aligned_cols=113 Identities=10% Similarity=-0.054 Sum_probs=84.5
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.+...+.-.+..|+.+.+.+++++|+ -+.++.++.+++.+..+..... ...+.+.++
T Consensus 67 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~ 126 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGYYADGKNTKQ-----------FLPFLLILSAICMLGFGASLGS---------GSVSLGLMI 126 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhccCccc-----------hHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHH
Confidence 34455556666788888898887665542 2466777766666655543210 023677788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~ 379 (411)
...+++|++|....+....++.+..|++.||.++|++.....+|..+++.+..
T Consensus 127 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 127 ALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 88999999999999888899999999999999999999999999888876654
No 144
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.57 E-value=0.00069 Score=67.65 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=84.1
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+...+...++.|+.+++.+++.||+ -+..+.++.+++.+.+.... +.
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~laDr~grr~-----------vl~~~~~~~~~~~~~~~~~~--------------~~--- 91 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGAFADSFPKGR-----------VMFIANGIKLLGCLLMLFGI--------------HP--- 91 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhccCCch-----------hhHHHHHHHHHHHHHHHHHH--------------HH---
Confidence 355667777888899999999998877653 24566666666655544321 22
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+...+++|+++.+..|...+++.+..|++.|+.++|++.....+|..+|+.+++..
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l 147 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL 147 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999988888888877655
No 145
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.55 E-value=0.0028 Score=63.32 Aligned_cols=109 Identities=13% Similarity=-0.018 Sum_probs=81.2
Q ss_pred ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
..+...+...+..|+.+.+.+++.+|+ -+..+.++.+++.+..... .+.+.++..
T Consensus 53 ~~~~~~~~~~~~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~l~~~ 107 (406)
T PRK15402 53 SMTAYLAGGMFLQWLLGPLSDRIGRRP-----------VMLAGVAFFILTCLAILLA--------------QSIEQFTLL 107 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHHHH--------------ccHHHHHHH
Confidence 445566667777888888887665442 2456777777776665543 256667778
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
.++++++.....+.....+.+..|++.++..+++......+|..+|+.+.+.+.
T Consensus 108 ~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 108 RFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888777788899999999999999888777788888887776553
No 146
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.54 E-value=0.0014 Score=64.99 Aligned_cols=110 Identities=11% Similarity=-0.065 Sum_probs=85.3
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
+..++..+...+..|+.+++.+++.+|+ -+..|.++.+++.+..... .+.+++..
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----------~l~~~~~~~~i~~~~~~~~--------------~~~~~~~~ 96 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKIADRSGRKP-----------VAIPGAALFIIASLLCSLA--------------ETSSLFLA 96 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHhCChH-----------HHHHHHHHHHHHHHHHHHh--------------CcHHHHHH
Confidence 3455555667788899999988765442 2456777777777766543 25667777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
..++++++.....+..+.++.+..|++.|+..+|+++....+|..+++.++..+.
T Consensus 97 ~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 97 GRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999888777789999999999999999999988888888888876653
No 147
>PRK12382 putative transporter; Provisional
Probab=97.53 E-value=0.00024 Score=70.62 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
....+++..+.+++.+...|...+...|.+++++ |++++++++...++|..+||.+.|++.+++||+..|.+.+
T Consensus 302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~ 375 (392)
T PRK12382 302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGA 375 (392)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 4455667788889999888988888888887533 7999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhh
Q 015223 96 AAMALGLFGVVS 107 (411)
Q Consensus 96 ~~~~l~~i~~~~ 107 (411)
+..+++.+..+.
T Consensus 376 ~~~~~~~~~~~~ 387 (392)
T PRK12382 376 ISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHh
Confidence 777777665543
No 148
>PRK03699 putative transporter; Provisional
Probab=97.50 E-value=0.002 Score=64.24 Aligned_cols=110 Identities=10% Similarity=0.059 Sum_probs=83.7
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+...+...+...+..++.+++.+++.+|+ .+..+.++.+++.+...+. .+.+++.
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r~-----------~~~~~~~~~~i~~~l~~~~--------------~~~~~~~ 99 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPLKR-----------QLIFGFALMILAVAGLMFS--------------HSLALFS 99 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHc--------------chHHHHH
Confidence 34456666777788888888887776552 2456777777777766653 2566777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.++++....+.....+.+..|++.|+..++..+...++|..+++.+.+.+
T Consensus 100 ~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 100 IAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999988877778899999999999999998888888888888776644
No 149
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.49 E-value=0.002 Score=64.87 Aligned_cols=110 Identities=14% Similarity=-0.046 Sum_probs=83.2
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
+..++..+...+..|+.+.+.++++||+ -+..+.++.+++.+..... .+.++++.
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~-----------~l~~~~~~~~~~~~~~~~a--------------~~~~~l~~ 109 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRP-----------VLITGALIFTLACAATLFT--------------TSMTQFLI 109 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchH-----------HHHHHHHHHHHHHHHHHHc--------------CCHHHHHH
Confidence 3445555666777888888887766542 2566777777777666653 36778888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
.-+++|+++....+.....+.+..|++.++.+++++.....+|..+|+.+++...
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~ 164 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM 164 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998766666667778889999999999999999999999988887654
No 150
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.48 E-value=0.00027 Score=71.28 Aligned_cols=87 Identities=8% Similarity=-0.068 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhcc------ccch
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTH------SGMD 88 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~------~g~~ 88 (411)
.+.+++...+.+++.+...+....++.|.+++++ |.+++++.+ +..++|..+||.++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4567778888999999999999999999998644 799999997 56789999999999999987 4699
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 015223 89 VGFGVSAAAMALGLFGVVSG 108 (411)
Q Consensus 89 ~~F~i~~~~~~l~~i~~~~~ 108 (411)
.+|.+.++..+++.+.+.+.
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998877666666555443
No 151
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.47 E-value=0.0012 Score=65.93 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=87.8
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.+.+.+...+.+|+.+++.+++++|+ -+..|..+.+++.+..++.+ +.+.+
T Consensus 46 ~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~-----------~l~~~~~l~~~~~~~~~~a~--------------~~~~l 100 (393)
T PRK09705 46 AALLTALPVVTMGGLALAGSWLHQHVSERR-----------SVAISLLLIAVGALMRELYP--------------QSALL 100 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHCc--------------chHHH
Confidence 345667777888888999999987776653 36789999999999888753 46667
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+...+++|+|+....+...+.+.+..| +.|+.++|.+......|..+|+.++..+
T Consensus 101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l 155 (393)
T PRK09705 101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL 155 (393)
T ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999988877777777776 7799999999988888888888777654
No 152
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.42 E-value=0.00096 Score=67.99 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=86.2
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
.+.+...+..++..++.+++.+++.+|+ -+..+.++.+++.++..... ..+.++++.
T Consensus 80 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~------------~~~~~~l~~ 136 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGYLAGKYVFKW-----------SIGIGMFLSSVISIVIPWAA------------GGGIALVVF 136 (465)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHhCcch-----------hhHHHHHHHHHHHHHHHHHH------------HcCchHHHH
Confidence 3445555666777888888877665542 24566666666665554332 134667888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
..+++|++|....+....++.+..|++.|+.++|+......+|..+++.+.+.+..
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~ 192 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE 192 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999998999999999999999999999999999999998887643
No 153
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.39 E-value=0.021 Score=59.22 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc-ccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-SGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-~g~~~~F~i 93 (411)
+...+++||++.++|.|+..-.+.-.+++.-+++. |+...+.+...+++|.+++..++....+. ++||..+.+
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 77899999999999999999888888888776533 89999999999999999996655555443 589988877
Q ss_pred HHHHHHHHHHH
Q 015223 94 SAAAMALGLFG 104 (411)
Q Consensus 94 ~~~~~~l~~i~ 104 (411)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 66544433333
No 154
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.38 E-value=0.0018 Score=63.70 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=85.9
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
.+.++..+...+..|+.+++.+++.+| +-+..+.++.+++.+.....+ +.+.+..
T Consensus 30 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-----------~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~ 84 (377)
T PRK11102 30 MTLSAYILGFAIGQLFYGPMADSFGRK-----------PVILGGTLVFALAAVACALAQ--------------TIDQLIY 84 (377)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhcCCh-----------HHHHHHHHHHHHHHHHHHHHc--------------cHHHHHH
Confidence 345566677778888888887665433 235678888888877776542 4566777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
..++++++.....+...+++.+..|++.|+.++|+++....+|..+++.+.+.+.
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988888889999999999999999999999999999888776553
No 155
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.0017 Score=60.97 Aligned_cols=274 Identities=12% Similarity=0.104 Sum_probs=150.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
+..+....++.+.++|.-.....-+......|+.++ ..-+|+++-...-+|+.+...+-+++.++.+= .|-
T Consensus 134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~--~~~- 204 (459)
T KOG4686|consen 134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR--MFP- 204 (459)
T ss_pred HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH--hcc-
Confidence 356777889999999999888888899999998755 78899999999999999999999999876541 110
Q ss_pred HHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhh
Q 015223 94 SAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDK 173 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (411)
...-..+++...+ ..+..+. ++.+ .+..+ |.|.
T Consensus 205 ~~ghT~LG~~l~~-~~~tc~~------slic---al~lg-------------------------------------~~D~ 237 (459)
T KOG4686|consen 205 GVGHTLLGLWLCF-EVKTCKQ------SLIC---ALSLG-------------------------------------LSDD 237 (459)
T ss_pred cchHHHHHHHHHH-HHHHHHH------HHHH---HHHhh-------------------------------------hhhh
Confidence 1111111211111 0000000 0000 00000 0000
Q ss_pred -hhhhhccCCCCCCCCcccccchhHHHHHHHH-hHHHHHHHHHHHHHHHh---hhhHHHHHHHHhhcccCCCCeeeCCcc
Q 015223 174 -ACIKVEDGTNKKESPWRLCTVTQVEQVKVLI-SVVPIFACTIIFNTILA---QLQTFSVQQGSAMNNKLTKNFHVPPAS 248 (411)
Q Consensus 174 -a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~l~~~~~~~~~~~~---q~~s~~~~~~~~~~~~~g~g~~i~~~~ 248 (411)
|.-+...+.+..+..-| .+|++..- .+-.+++.++.|+.... -....+ +|+ ++| +++..
T Consensus 238 rAerilh~e~g~~Ge~pk------Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~f-F~~-----rfG----lS~~~ 301 (459)
T KOG4686|consen 238 RAERILHLEEGFLGEEPK------LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMF-FQK-----RFG----LSAVS 301 (459)
T ss_pred HHHHHHhhhcCcccCCcc------cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHH-HHH-----hhC----CChhh
Confidence 00000000000000001 02222211 11112222223332221 111121 121 233 44444
Q ss_pred ccchhH---HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 249 LQSIPY---IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 249 l~~in~---l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
-.++++ ....++.|+.+.+.++++++. +-+..+.++..++=..+.+.. .++|
T Consensus 302 a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~-------------lsPy-- 356 (459)
T KOG4686|consen 302 AGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF-------------LSPY-- 356 (459)
T ss_pred ccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh-------------ccHH--
Confidence 455555 335677899999998887653 223444444444433333321 2332
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
.+..++|++-.+..-...-.+...+|++.-|++-|+.+..+++|-.+.+.+++++...+
T Consensus 357 -~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~ 415 (459)
T KOG4686|consen 357 -TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD 415 (459)
T ss_pred -HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence 24567788877777667778999999999999999999999999999999999886543
No 156
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.36 E-value=0.003 Score=63.36 Aligned_cols=116 Identities=15% Similarity=-0.016 Sum_probs=86.8
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+.+.+...+..++..|+.+++.+++.+|+. +..+.++.+++++........ . ..+.+++
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-----------l~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~l 113 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-----------ILLARGTCGLGFIGLALNAFL-----P----EPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-----------EEehHHHHHHHHHHHHHHHHc-----C----CCcHHHH
Confidence 4556677778888889999998877765531 345666666666655432110 0 1356667
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
....++.+++..+..++..+.+.+..|++.++.++++++...++|..+|+.+++.+
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 77788999999988888888999999999999999999999999999888887765
No 157
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.36 E-value=0.0018 Score=66.78 Aligned_cols=116 Identities=11% Similarity=0.067 Sum_probs=88.0
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
++.+...+..++..++.+++.++++||+ -+.++.++.+++.++.+... .+....+.++++.
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~-----------~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~ 120 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKR-----------VYGMELIIMIIATVASGLSP--------GSSPKSVMATLCF 120 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHH-----------HHHHHHHHHHHHHHHHHHcc--------CcccchHHHHHHH
Confidence 3456666777788888888887776653 24567777777766655432 0000123567888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
..+++|+++....+....++.+..|++.||.++++.+....+|..+++.+...+.
T Consensus 121 ~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888899999999999999999999999999999998877553
No 158
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.36 E-value=0.00048 Score=67.16 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.++..+...+..++.+++.+++.+|+ -+.+|.++.+++.++.+... +.++++
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 87 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRV-----------FLPIGLILCAIVNLFFGFST--------------SLWVMA 87 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCee-----------hhHHHHHHHHHHHHHHHHhh--------------hHHHHH
Confidence 44566677777888888898887766542 25678888888887777652 567777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 375 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~ 375 (411)
...++.++++....+...+++.+..|++.|+.++|++.....+|..+++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 88 ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred HHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 8889999999999988889999999999999999999999999998888
No 159
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.35 E-value=0.003 Score=63.94 Aligned_cols=113 Identities=13% Similarity=-0.005 Sum_probs=82.3
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.++..+...+..++.+++.+++.+|+ -+..+.++.+++.+..+.... ...+.+.+
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l 121 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILSAAVMLLMGFVPW----------ATSSIAIM 121 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCce-----------ehHHHHHHHHHHHHHHhcccc----------ccchHHHH
Confidence 344556666777788888888887665442 245677777777776654321 01245556
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~ 379 (411)
....++.++++....+...+.+.+..|++.||.++|+++...++|+.+++.+..
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 677788999999888777788999999999999999999998888888765544
No 160
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00059 Score=66.79 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=98.0
Q ss_pred eCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchH
Q 015223 244 VPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIF 323 (411)
Q Consensus 244 i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~ 323 (411)
...+++...-+++.++.-|+.+.+.++++.| .-|.+|++++.++-++.++.+ +.+
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~-----------ipm~~Gl~vmf~sTilFafg~--------------sy~ 160 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYK-----------IPMVAGLFVMFLSTILFAFGN--------------SYP 160 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccc-----------cHHHHHHHHHHHHHHHHHHcc--------------hhH
Confidence 3456667777788899999999998766654 226899999999999999875 566
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH-HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 324 SITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM-QAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 324 ~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~-~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++.+-+++|+|..+.+...++++++.-|++. ||.+||+.....++|..+|+.+++.++.
T Consensus 161 ~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe 221 (464)
T KOG3764|consen 161 MLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE 221 (464)
T ss_pred HHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh
Confidence 78889999999999999888899999988877 5999999999999999999999998765
No 161
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.33 E-value=0.0042 Score=63.30 Aligned_cols=121 Identities=13% Similarity=0.032 Sum_probs=86.8
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
+..+...+...+.+++.+++.++++||+ -+.++.++.+++.+..+..+........ +. ...+.+++.
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~-----------~~~~~~~l~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~ 125 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISALGSAWPEFGFTSIGP-DN-TGYVPEFVI 125 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHHHHHHHHhhccccccccc-cc-hhHHHHHHH
Confidence 4456666778888999999888777663 2466777777776666653211110000 00 123455677
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
..+++|++.....+...+++.+..|++.||.++|++.....+|..+++.+....
T Consensus 126 ~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred HHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988889999999999999999999999999988887665544
No 162
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.32 E-value=0.0096 Score=60.45 Aligned_cols=98 Identities=9% Similarity=0.058 Sum_probs=79.9
Q ss_pred HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223 258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM 337 (411)
Q Consensus 258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~ 337 (411)
.+...+.+.+.++++.| +-+.++++..++..++.++.. +++.+....++.|++|.
T Consensus 76 al~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa~--------------Sl~~L~i~R~llGvaEA 130 (511)
T TIGR00806 76 LAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLGT--------------SVWHMQLMEVFYSVTMA 130 (511)
T ss_pred HHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 45555566666555433 335677777777777777653 67788889999999999
Q ss_pred HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 338 FTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 338 l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
... +.+.++++..|++.|++++|++.....+|..+++.+++.+
T Consensus 131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 8889999999999999999999999999999999999984
No 163
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.28 E-value=0.0071 Score=60.04 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=83.5
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
++..++..+..++..|+.+.+.+++.||+ -+..+.++.+++.+..... .+.+++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~ 100 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRRP-----------VILVGMSIFILGTLVALFA--------------HSLTVLI 100 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChH-----------HHHHHHHHHHHHHHHHHHH--------------ccHHHHH
Confidence 34456666777788888898887665542 2456777777776665543 2566777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.+++.....+...++..+..|++.++.+++.+.+...+|..+|+.+.+.+.
T Consensus 101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 101 AASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999988877777778888899999999999999999988888888777653
No 164
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.053 Score=53.57 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=57.0
Q ss_pred cccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223 10 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 83 (411)
Q Consensus 10 ~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~ 83 (411)
.|+.....+|..++.+++.|.|..+...++++++.-++++..+ =.++-.....+|+.++|.+++++..
T Consensus 98 Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~------rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 98 AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAF------RLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH------HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999999865322 2666677778899999999998866
No 165
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.25 E-value=0.0037 Score=61.97 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=75.8
Q ss_pred ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
+.+...+...+.++..+.+.+|+.||+ +..+.++..+........ ..++++++..
T Consensus 31 ~~s~~~~g~~i~~~~~G~l~Dr~grr~------------~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~ 85 (368)
T TIGR00903 31 LAITYPAAFLALTIPSGLLLDRAFKRW------------FLFGSLATFAAAAGRLLD-------------PFNYEWLLAC 85 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchH------------HHHHHHHHHHHHHHHHHH-------------hccHHHHHHH
Confidence 344444556677788888887776432 233333333222211111 1368889999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.+++|+||.... +....+.+..|++.|+.++++......+|..+++.++..+..
T Consensus 86 R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 86 QLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred HHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999644 444667899999999999999999999999999988887643
No 166
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.20 E-value=0.0008 Score=65.56 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHH
Q 015223 18 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA 97 (411)
Q Consensus 18 ~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~ 97 (411)
.++....+.+++.|...+...++..|.+++++ |++++++++...++|..++|.+.|++.++.||++.|.+.++.
T Consensus 297 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~ 370 (377)
T TIGR00890 297 LFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAF 370 (377)
T ss_pred HHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 34455667788888888888899999998654 799999999999999999999999999999999999988766
Q ss_pred HHHH
Q 015223 98 MALG 101 (411)
Q Consensus 98 ~~l~ 101 (411)
.+++
T Consensus 371 ~~~~ 374 (377)
T TIGR00890 371 ALTS 374 (377)
T ss_pred HHHh
Confidence 5554
No 167
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.20 E-value=0.0087 Score=60.87 Aligned_cols=105 Identities=13% Similarity=-0.045 Sum_probs=77.5
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
...+...+...+..|+.+.+.+++.+|+ -+.++.++.+++.+..++... . ..+.++++.
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~-----------~l~~~~~~~~i~~~~~~~~~~---------~-~~~~~~~~~ 125 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILAAAVMLFMGFVPW---------A-TSSIAVMFV 125 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCch-----------hHHHHHHHHHHHHHHHHhhhc---------c-cccHHHHHH
Confidence 3445555667788889898887665542 256787888888877776531 0 124666777
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYL 373 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~l 373 (411)
..++.++++....++....+.+..|++.|+.++|+++....+|+.+
T Consensus 126 ~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 171 (452)
T PRK11273 126 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGL 171 (452)
T ss_pred HHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhH
Confidence 7889999999887766678888999999999999998888877643
No 168
>TIGR00898 2A0119 cation transport protein.
Probab=97.19 E-value=0.0016 Score=67.06 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=87.5
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+..+++..+..++..++.+.+.++++||+ -+.++.++.+++.+..++. .+.++++
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~-----------~~~~~~~~~~i~~~~~~~~--------------~~~~~~~ 184 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKK-----------VLLLSTLVTAVSGVLTAFS--------------PNYTVFL 184 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHc--------------ccHHHHH
Confidence 45677777888888999999887766552 1456777777766666543 3677788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.|++.....+....++.+..|++.|+.++++......+|..+++.++..+
T Consensus 185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999988889999999999999999999999999988888776543
No 169
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.17 E-value=0.0014 Score=66.74 Aligned_cols=84 Identities=11% Similarity=-0.046 Sum_probs=68.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 015223 287 RIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS 366 (411)
Q Consensus 287 k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~ 366 (411)
-+.+|++.-.++..+.++.. .. |++-...+....-.+..|+..+++.++++++.+|..+++....
T Consensus 310 ~i~lGl~~~~~~~~~~af~~--------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i 374 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFAT--------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGI 374 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhc--------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHH
Confidence 35789999999999999874 23 3332334555666677799999999999999999999999999
Q ss_pred HhHHHHHHhHhhhhhcccc
Q 015223 367 YSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 367 ~~~G~~lg~~l~~~~~~~s 385 (411)
.++.+.+++.+-+.+...+
T Consensus 375 ~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 375 EGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHhhhhhHHHHHHHHHHH
Confidence 9999999999999887776
No 170
>PRK11043 putative transporter; Provisional
Probab=97.16 E-value=0.011 Score=58.89 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=82.1
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.++..+...+..++.+++.+++.+|+ -+..+.++.+++.+..... .+.+++.
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~l~ 98 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRKP-----------VLLAGLSLFALGSLGMLWV--------------ESAAQLL 98 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCcH-----------HHHHHHHHHHHHHHHHHHh--------------cCHHHHH
Confidence 34556666777788888888887665442 2466777777777666553 2567777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++++++.....+...+.+.+..|++.++.+.+..+...++|..+++.+++.+.
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999988777766688899999999988888888777888888877776553
No 171
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.15 E-value=0.039 Score=56.13 Aligned_cols=85 Identities=9% Similarity=-0.096 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHH---
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF--- 91 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F--- 91 (411)
+...+.+.+++.|++.|... .....+...+|+++ |.++.++...+.++|.++++.+++++. ++||+.-+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 57788899999999999999 99999999998644 899999999999999999999999954 68998644
Q ss_pred HHHHHHHHHHHHHHhh
Q 015223 92 GVSAAAMALGLFGVVS 107 (411)
Q Consensus 92 ~i~~~~~~l~~i~~~~ 107 (411)
.|+.....+++++-++
T Consensus 186 ~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 186 IISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555556554443
No 172
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.016 Score=59.66 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccccCCCCCCC
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTSSSSNRGW 393 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~~~~~~~w 393 (411)
+.+.++.-.+++|+-|....|+...+..+--.++.||..+|+|+...++|+++|++++..+.+.....+..+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 5777788889999999999999999999999999999999999999999999999999986543333334455
No 173
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.14 E-value=0.0029 Score=65.10 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=80.1
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
+...+.+++.+++.++++||+ -+.+++++.+++.+..++....-. - + ...+.+++...+++|+
T Consensus 68 l~~~ig~~~~G~l~Dr~Grr~-----------~l~~~~~l~~i~~~~~a~~~~~~~----~-g-~~a~~~l~~~R~l~G~ 130 (490)
T PRK10642 68 LIRPLGGLFFGMLGDKYGRQK-----------ILAITIVIMSISTFCIGLIPSYAT----I-G-IWAPILLLLCKMAQGF 130 (490)
T ss_pred HHHHHHHHHHHHHHHhcccHH-----------HHHHHHHHHHHHHHHHHhcccHHH----H-H-HHHHHHHHHHHHHHHh
Confidence 344566777777777666553 367888888888888887642100 0 0 0112246778899999
Q ss_pred HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
|+....++...++.+..|++.||.+++++.....+|..+|+.+...+
T Consensus 131 g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 131 SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988889999999999999999999888888888877655443
No 174
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.14 E-value=0.01 Score=59.37 Aligned_cols=114 Identities=15% Similarity=0.070 Sum_probs=81.2
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+...+...+...+..|+.+++.++..+|+ -+..+.++.+++.+....... . ..+.+.+
T Consensus 50 ~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~-----------~l~~~~~~~~~~~~~~~~~~~-------~---~~~~~~l 108 (402)
T TIGR00897 50 SASAFTLYGIAAAISAWISGVVAEIIGPLK-----------TMMIGLLLWCVGHAAFIVFGL-------G---HANYPLI 108 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHHHHHHHHHHhc-------c---CccHHHH
Confidence 344566677778888999999887665542 245677777776554432210 0 1245556
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH-HHHhHhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGF-YLSSLLVSF 380 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~-~lg~~l~~~ 380 (411)
...+++.++|.....+.....+.+..|++.|+.++|++....++|. .+|+.+.+.
T Consensus 109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778889999887777776788889999999999999999988886 567766543
No 175
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.11 E-value=0.005 Score=69.95 Aligned_cols=115 Identities=9% Similarity=-0.015 Sum_probs=87.0
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
++..++..+..+++.|+.+++.+++++|+ -+..+.++.+++.+...+... ..++++++
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~-----------~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~ 107 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNR-----------VIRIVKLFEVGLTLLIVLAYY-----------LGWFWLAF 107 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHH-----------HHHHHHHHHHHHHHHHHHHHH-----------HccHHHHH
Confidence 44556666777888999999988776653 134454444444433333211 12577788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
...+++|++..+..+..++++.+..|++.|+.++|+.....++|..+|+.+++.+..
T Consensus 108 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 108 AVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988999999999999999999999999999999999887654
No 176
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.11 E-value=0.038 Score=54.85 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=65.1
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHH
Q 015223 286 QRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYC 365 (411)
Q Consensus 286 ~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l 365 (411)
+.+..|+++..+.++.....+ .+....+.. .+.+....-+....=++..+.+||+..+...|++.+
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~-------------~~~~f~i~g-ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyal 384 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLE-------------GELDFWILG-LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYAL 384 (438)
T ss_pred eeehHHHHHHHHHHHHHHHcc-------------ccHHHHHHH-HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhh
Confidence 445677777666666655553 123333333 566777777775555799999999999999999999
Q ss_pred HHhHHHHHHhHhhhhhcccc
Q 015223 366 SYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 366 ~~~~G~~lg~~l~~~~~~~s 385 (411)
+...++.+|+.+.+.+...|
T Consensus 385 tgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 385 TGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999988776
No 177
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.08 E-value=0.0035 Score=64.65 Aligned_cols=108 Identities=11% Similarity=0.009 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhhHhHHh-hhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVP-FARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~-~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
.......++.|+.+++-++ +++| +-+.+|.++.+++.+.+++.. .....+....+
T Consensus 58 ~~~~~~~~~~~~~G~laDr~~G~r-----------~~~~~g~~~~~~g~~~~~~~~-------------~~~~ll~~~~~ 113 (489)
T PRK10207 58 AFAALVYGLISIGGYVGDHLLGTK-----------RTIVLGAIVLAIGYFMTGMSL-------------LKPDLIFIALG 113 (489)
T ss_pred HHHHHHHHHHhhHHHhhhhccchH-----------HHHHHHHHHHHHHHHHHHHhc-------------cchhHHHHHHH
Confidence 3334455666777888776 5544 336788888888888877642 11112445678
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhh--HHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKG--MQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~--~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++++|+.+..+...+++.++.|++ .|+...+++++..++|..+|+.+++.+..
T Consensus 114 l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 114 TIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888789999999887 45778999999999999999888877644
No 178
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.03 E-value=0.0031 Score=71.72 Aligned_cols=112 Identities=7% Similarity=0.034 Sum_probs=82.9
Q ss_pred cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223 250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF 329 (411)
Q Consensus 250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 329 (411)
.++..+..++++|+.+++.+++.+|+ ....+..+.++. .+.....+. ..++++++...
T Consensus 58 ~~~~~l~~~l~~~~~G~laDr~~rk~--------~~~~~~~~~~~~-~~~~~~~~~-------------~~s~~~l~~~~ 115 (1140)
T PRK06814 58 GAVFILPFFIFSALAGQLADKYDKAK--------LAKILKFAEIGI-AALAIYGFH-------------LNSVPLLFAAL 115 (1140)
T ss_pred HHHHHHHHHHHhhhHHhhhhhccHHH--------HHHHHHHHHHHH-HHHHHHHHH-------------HhhHHHHHHHH
Confidence 44555667888999999998887663 111111111111 111122221 13688888899
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+++|+++.+..|...+++.+..|++.++.++|+.....++|..+|+.+++.+..
T Consensus 116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998754
No 179
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.01 E-value=0.00091 Score=68.21 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc-cchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS-GMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~-g~~~~F~i 93 (411)
+.+.+++.+++.+++.|...++..+++.|.+++++ ++++++++....++|..+||.++|++.+.. +|+..|.+
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~ 405 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYA 405 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHH
Confidence 35566778888999999999999999999987644 789999999999999999999999999877 59999999
Q ss_pred HHHHHHHHHHHH
Q 015223 94 SAAAMALGLFGV 105 (411)
Q Consensus 94 ~~~~~~l~~i~~ 105 (411)
.++..+++.+..
T Consensus 406 ~~~~~li~~~~~ 417 (455)
T TIGR00892 406 SGSIVVSAGLFL 417 (455)
T ss_pred hhHHHHHHHHHH
Confidence 887766665543
No 180
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.00 E-value=0.013 Score=59.28 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=78.4
Q ss_pred HHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHH
Q 015223 257 LVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE 336 (411)
Q Consensus 257 ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige 336 (411)
..+.+++.+++-++++||+ -+..++++.+++.+..++....- .. + ..++.+++...+++|+|+
T Consensus 76 ~~ig~~~~G~l~Dr~Grr~-----------~l~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~l~~~R~l~G~g~ 138 (432)
T PRK10406 76 RPIGGWLFGRIADKHGRKK-----------SMLISVCMMCFGSLVIACLPGYE----TI-G-TWAPALLLLARLFQGLSV 138 (432)
T ss_pred HHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHHHHHHHhhcCCch----hH-H-HHHHHHHHHHHHHHHhhh
Confidence 3355666677776666542 35778888888887776643100 00 0 123456778889999999
Q ss_pred HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 337 MFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 337 ~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
....+....++.+..|++.||.+++++......|..+++.+...+.
T Consensus 139 g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888899999999999999999998888888888776655443
No 181
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.98 E-value=0.0029 Score=67.32 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=91.4
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhh--c----------
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDS--A---------- 313 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~--~---------- 313 (411)
.+++.+.+.+...+..++.+.+-.+..| ++-+++|.++.++|.++.++.+....++ .
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r-----------~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKLHR-----------PIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhcccCc-----------ceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 3456666677777777777766544332 2336889999999999888764221000 0
Q ss_pred ----------------------ccC-CC--ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 015223 314 ----------------------LDS-GK--TLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYS 368 (411)
Q Consensus 314 ----------------------~~~-~~--~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~ 368 (411)
.+. +. ...+..++...+++|+|+....+...+++.+..|++.|+.++|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 000 00 01244566788999999999997777999999999999999999999999
Q ss_pred HHHHHHhHhhhhhcc
Q 015223 369 FGFYLSSLLVSFVNK 383 (411)
Q Consensus 369 ~G~~lg~~l~~~~~~ 383 (411)
+|..+|..+++.+..
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999998887654
No 182
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.90 E-value=0.0061 Score=62.62 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=83.6
Q ss_pred ccccchhHHHHHHHHHhhhHhHHh-hhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVP-FARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~-~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
+.+.....+...+..++.+++.++ +++|+ -+..|.++.+++.+++++.. +.+++
T Consensus 51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~~-----------~l~~~~~~~~~g~~~~~~~~--------------~~~~~ 105 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWFGDRVWGTKK-----------TMVLGGIVLMLGHFMLAMSI--------------YPDLI 105 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcchHH-----------HHHHHHHHHHHHHHHHHhcc--------------cHhHH
Confidence 344555556667777777877776 45442 25778888888887776532 34556
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhH---HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGM---QAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~---~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
....++.++|+.+..+....++.++.|++. |+.+.++++...++|..+|+.+.+.+..
T Consensus 106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999988888889999998754 8888999999999999999988876543
No 183
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.89 E-value=0.0025 Score=62.46 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
.+..++...+.+++.|...|...+...|..|+ + +++++++++...++|..++|.++|++.+..||+..|++.+
T Consensus 288 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~ 360 (375)
T TIGR00899 288 LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 34455566677888888888888888887753 2 4689999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHh
Q 015223 96 AAMALGLFGVV 106 (411)
Q Consensus 96 ~~~~l~~i~~~ 106 (411)
+..+++.+...
T Consensus 361 ~~~~~~~~~~~ 371 (375)
T TIGR00899 361 VMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHh
Confidence 77777666554
No 184
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.88 E-value=0.0081 Score=62.36 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=87.8
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+.++....+..+++.|+.+.+.+++.||+ -+..+-++.++..+.+++.... + ..++|.+
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drrr-----------ili~~~~~~~~~~~~L~~l~~~--------~-~~~~~~L 106 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRRR-----------ILILSQLLRALVALLLAVLAFF--------G-LLSPWLL 106 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchH-----------HHHHHHHHHHHHHHHHHHHHHh--------C-cCCHHHH
Confidence 455677788899999999999998876653 1334444444443333333210 1 3677777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
....++.+++..+..|+.++.+-+.+|++....+++++.+..+++..+|+.+++.+
T Consensus 107 l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 107 LILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 78889999999999999999999999999999999999988888888888777764
No 185
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.86 E-value=0.025 Score=58.06 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 251 SIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 251 ~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
+...+...+..++.+++.+++.+|+ .+..+.++.+++.++.+... +.+.+....+
T Consensus 78 ~~~~~~~~~~~~~~G~l~dr~G~r~-----------~~~~~~~~~~~~~~~~~~~~--------------s~~~l~~~r~ 132 (476)
T PLN00028 78 IASVSGSIFSRLAMGPVCDLYGPRY-----------GSAFLLMLTAPAVFCMSLVS--------------SATGFIAVRF 132 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHHHHhc--------------CHHHHHHHHH
Confidence 3444455566778888776665442 24567777777766665532 4555666778
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhh
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSF 380 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~ 380 (411)
++|+++....+ ...++.+..|++.||.++|+++....+|..+++.+...
T Consensus 133 l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 133 FIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999986544 44678899999999999999987766777666555443
No 186
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.0055 Score=60.69 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=75.0
Q ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH
Q 015223 283 SPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM 362 (411)
Q Consensus 283 s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~ 362 (411)
++..-+..|+++.++..+++++.+ |++.++.-+++.|.-+..-.|+....+++--|++.||...++
T Consensus 92 npr~fm~~gLilsai~nil~Gfs~--------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~si 157 (448)
T COG2271 92 NPRYFMAFGLILSAIVNILFGFSP--------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI 157 (448)
T ss_pred CCceeehHHHHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEE
Confidence 555667899999999999999863 677788889999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhHhhh
Q 015223 363 TYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 363 ~~l~~~~G~~lg~~l~~ 379 (411)
|+.+.++|+.+.+.+..
T Consensus 158 Wn~shNiGGal~~~~~~ 174 (448)
T COG2271 158 WNTSHNIGGALAPLVAL 174 (448)
T ss_pred ehhhhhcccchHHHHHH
Confidence 99999999999999984
No 187
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.79 E-value=0.007 Score=62.76 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=93.3
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.+...+...+..++.+++.++++||. -+.++.++..+|.++.+... ++++++
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~-----------~l~~~~~~~~iG~ii~~~a~--------------~~~~l~ 146 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKK-----------TLLLAVVLFLIGAIIIALAP--------------SWYQLI 146 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHhh--------------hHHHHH
Confidence 67788888888999999999998888764 25788888888888888752 788999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.|+|-.+.+.....++.+.+|++.||...++..+...+|..++-.+....
T Consensus 147 ~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 147 VGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred HHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999977778999999999999999999999999998884443333
No 188
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.071 Score=55.18 Aligned_cols=313 Identities=11% Similarity=0.025 Sum_probs=158.3
Q ss_pred chHHHHHHHHHH-HHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 14 FKASIFFLALYL-VAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l-~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
.+.+.+++...+ .++|.|+.......+++..|++ +|..+-++--.+..+|.++=|.+.-++.+.+|||..++
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l 204 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALL 204 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHH
Confidence 345556655554 8999999999999999988863 27889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcccceeccCCCCCcc--hhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhh
Q 015223 93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIF--TPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRF 170 (411)
Q Consensus 93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (411)
+=+...+-..+.-...+..- +..+|. .|... .....+. .....+... .....++.. ..-
T Consensus 205 ~~~~~~l~~~~~~~~~rp~~----~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~---~~~~~~~~~-~~~ 265 (509)
T KOG2504|consen 205 IFGGISLNVLVAGALLRPLS----PPKKPNEEKDLRN----------SAASVES-TPKPVELRI---SERDSGLKK-LSL 265 (509)
T ss_pred HHHHHHHHHHHHHHHcCCCC----cCCCchhhhhhcc----------ccccccc-ccccccccc---ccCCCCCCc-ccc
Confidence 76655543333333332211 111111 00000 0000000 000000000 000000000 000
Q ss_pred hhhhhhhhccCCCCCCC-CcccccchhHHHHHHHH-hHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhcccCCCCeee-CC
Q 015223 171 LDKACIKVEDGTNKKES-PWRLCTVTQVEQVKVLI-SVVPIFACTIIFNTILAQLQTFS-VQQGSAMNNKLTKNFHV-PP 246 (411)
Q Consensus 171 l~~a~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~l~l~~~~~~~~~~~~q~~s~~-~~~~~~~~~~~g~g~~i-~~ 246 (411)
.+.......+. +..+ ..+ +.....|.+.+. +...+++....+..+-...+..+ ..... +. + ++- ..
T Consensus 266 ~~~~~~~~~~~--~~~~~~~~--~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~--~~--g--~~~~~a 335 (509)
T KOG2504|consen 266 SNLATLKRGPD--KWRNSPLQ--AFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK--SL--G--LSSNDA 335 (509)
T ss_pred cchhhhhhCCc--cccccchh--hhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hc--C--CChhhh
Confidence 00000000000 0000 000 000000111111 11112222222222222222222 11111 11 1 111 12
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.++-.+.-++.-++++.+-++-. ++...-+.++++..+++.+++.+. .+.+-++
T Consensus 336 a~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~~~~~p~~--------------~~~~~l~ 392 (509)
T KOG2504|consen 336 AFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLARLFLPFA--------------TTYVGLI 392 (509)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHH
Confidence 22233333334444444444332111 133444567777777777555554 3556677
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
...++.|+.......-......+..+.+.-+.+.|+..+..+++..+|+-+.+.+...+
T Consensus 393 ~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t 451 (509)
T KOG2504|consen 393 VFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT 451 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence 77788899888887555468899999999999999999999999999999999665544
No 189
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.79 E-value=0.017 Score=57.61 Aligned_cols=107 Identities=7% Similarity=0.068 Sum_probs=76.4
Q ss_pred HHHHHhhhHhHHhhhhhccCCCCCCCchhH-HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHH
Q 015223 258 VILVPLYDKFFVPFARKYTGHESGISPLQR-IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE 336 (411)
Q Consensus 258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k-~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige 336 (411)
.++.|+.+.+.+++..+. ....++ +..+.++.++++..+++.+. ..+++++...+++.+...
T Consensus 46 ~~~~~l~g~~~Dr~~~~~------~g~rr~~l~~~~~~~~l~~~~l~~~~~-----------~~~~~~l~~~~~~~~~~~ 108 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPL------LGRRRGWLLLTQVGLAASIAAMAFCPP-----------HAALWPLAGLAVLVAFLS 108 (402)
T ss_pred HHHHHHHHHHHHcccccC------CCcchhHHHHHHHHHHHHHHHHHhcCc-----------cchHHHHHHHHHHHHHHH
Confidence 466777777776652110 011122 56667777777776665420 135666777778888888
Q ss_pred HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 337 MFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 337 ~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
....+...+++.+..|++.|+.+.++.....++|..+++.+...+
T Consensus 109 ~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l 153 (402)
T PRK11902 109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL 153 (402)
T ss_pred HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 888899999999999999999999999988889999988766554
No 190
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.78 E-value=0.062 Score=57.20 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccc----------
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHS---------- 85 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~---------- 85 (411)
..+++++.++.++|.--+.|.-.+.+=|..++++ -...+++.|..--+|+++|.++++++.+.|
T Consensus 237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i 310 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI 310 (735)
T ss_pred HHHHHHHHHHhhcCCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence 4578889999999999999888888777776544 477999999999999999999999874321
Q ss_pred ---------cchhHHHHHHHHHHHHHHHHhhcccce
Q 015223 86 ---------GMDVGFGVSAAAMALGLFGVVSGTLYY 112 (411)
Q Consensus 86 ---------g~~~~F~i~~~~~~l~~i~~~~~~~~~ 112 (411)
-|+.+|++++.++++..+-+++.-|.+
T Consensus 311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 488999999999888888777765544
No 191
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.78 E-value=0.044 Score=55.91 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=67.6
Q ss_pred cchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHH
Q 015223 250 QSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQF 329 (411)
Q Consensus 250 ~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~ 329 (411)
.+++.+.-.++...++.+.++++.| +-+.+++++.++..+..++... + ...|.+.+....
T Consensus 76 ~ai~~l~~al~rip~G~l~Dr~G~R-----------~v~~~~~ll~~i~~~~~~~a~~-------~--~~~s~~~lli~r 135 (462)
T PRK15034 76 TALPSVSGALLRVPYSFMVPIFGGR-----------RWTVFSTAILIIPCVWLGIAVQ-------N--PNTPFGIFIVIA 135 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCh-----------HHHHHHHHHHHHHHHHHHHHHc-------c--cCCCHHHHHHHH
Confidence 3444444445534447766555543 3356777777777776665310 0 024777888889
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHH
Q 015223 330 LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLS 374 (411)
Q Consensus 330 ~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg 374 (411)
++.|++.. ..++....+.+..|++.||+++|++.....+|..++
T Consensus 136 ~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~ 179 (462)
T PRK15034 136 LLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVM 179 (462)
T ss_pred HHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence 99999844 556666899999999999999999954444444433
No 192
>PTZ00207 hypothetical protein; Provisional
Probab=96.77 E-value=0.045 Score=57.52 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=73.9
Q ss_pred HHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHH
Q 015223 260 LVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFT 339 (411)
Q Consensus 260 ~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~ 339 (411)
+.++.+++.+++++| +-+.+|.++.+++.++.++... +....+++.+....++.|+|+...
T Consensus 77 ~~lp~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~--------~~i~~s~~~l~l~r~l~G~G~~~~ 137 (591)
T PTZ00207 77 FLLPYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQ--------EVIEGSVVRLSVYNGLMTLGCMLF 137 (591)
T ss_pred HHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhc--------ccccCcHHHHHHHHHHHHHHHHHH
Confidence 444567777665544 3367899999999988887521 000136777888899999999999
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223 340 AVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 340 ~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~ 379 (411)
.++....+.+..| +.||.++|++....++|..+.+.+..
T Consensus 138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888876 67899999999999999976443333
No 193
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.69 E-value=0.015 Score=56.86 Aligned_cols=108 Identities=14% Similarity=0.149 Sum_probs=78.0
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
++..+++.+...+..|+.+++.+++.+|+ .+.+|.++.+++.+.. .. .+.++++
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~-~~--------------~~~~~l~ 91 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLARRFGEER-----------SVAAGLLLIAAGILIR-SA--------------PGTALLF 91 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCchH-----------HHHHHHHHHHHHHHHH-Hh--------------ccHHHHH
Confidence 45567777888888999999887666542 2456776666665544 21 2455667
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...++.++|.....+.....+.+..| +.|+.++|++.....+|..+++.+...+
T Consensus 92 ~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 92 AGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999887666666777666 5799999999988888888877665544
No 194
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.68 E-value=0.049 Score=56.16 Aligned_cols=85 Identities=7% Similarity=0.052 Sum_probs=68.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 015223 288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSY 367 (411)
Q Consensus 288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~ 367 (411)
+..+.++.+++...+++.. + ..+.+++.+.+++.+++.....+...+++.+..|++.|+.++|+.....
T Consensus 84 ll~~~i~~~~~~~~~a~~~-------~----~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~ 152 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE-------P----GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGY 152 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC-------C----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHH
Confidence 4567777777777776642 1 2467788888899999988888888899999999999999999999999
Q ss_pred hHHHHHHhHhhhhhcc
Q 015223 368 SFGFYLSSLLVSFVNK 383 (411)
Q Consensus 368 ~~G~~lg~~l~~~~~~ 383 (411)
.+|..+++.+...+..
T Consensus 153 ~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 153 RLAMLVSGGLALWLAD 168 (491)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999877665543
No 195
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.68 E-value=0.003 Score=61.65 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=92.4
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.+--.+...+.+|+.+++-++++||. .+.+|.+..+++.++.+.-. ++..++
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----------vll~c~~~va~s~ll~~~S~--------------~F~afv 125 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKP-----------VLLACLIGVALSYLLWALSR--------------NFAAFV 125 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchH-----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 34455556778888999999998888762 14677777778777777542 455677
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
.+-++.|+....+++.- +++.+.++++.|+..|+......++|-.+||.+++.....+
T Consensus 126 ~aR~l~Gi~kgnl~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~ 183 (451)
T KOG2615|consen 126 LARFLGGIFKGNLSVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS 183 (451)
T ss_pred HHHHhhhhccCchHHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH
Confidence 77899999999999888 79999999999999999999999999999999999887733
No 196
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.58 E-value=0.041 Score=56.41 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=85.0
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc---ccCCCccch
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA---LDSGKTLSI 322 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~s~ 322 (411)
.+..+.+.++..++.+|+.+++.++...|.+++ ++. +..|.+..++++++++..+....-.. +.+......
T Consensus 41 ~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~--il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 41 ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPF--IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHH--HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 345677788899999999999998643333221 111 34467777777777766442110000 000001122
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH--HHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQ--AFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~--g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
++.+....+..++--...++..+++.+.+|++.| +.+.+......++|+.+|..+++..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666677777777777999999999866 6789999999999999999888764
No 197
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.57 E-value=0.007 Score=60.30 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHH
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAA 96 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~ 96 (411)
..+.+.+.+.+++.|...+...+...|.+|+ + |+++.+++....++|..+|+.++|++.+++||+..|.+..+
T Consensus 306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~ 378 (393)
T PRK15011 306 AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALV 378 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344455555556565555556666677653 2 57899999899999999999999999999999999998887
Q ss_pred HHHHHHHHHhh
Q 015223 97 AMALGLFGVVS 107 (411)
Q Consensus 97 ~~~l~~i~~~~ 107 (411)
..+++++..+.
T Consensus 379 ~~~~~~~~~~~ 389 (393)
T PRK15011 379 MIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHh
Confidence 77776665554
No 198
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.56 E-value=0.0082 Score=58.75 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=77.6
Q ss_pred HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223 258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM 337 (411)
Q Consensus 258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~ 337 (411)
.+..|+.+++.+++++|+ -+.++.++.+++.++.+.....- .. + ....++++...+++|++..
T Consensus 49 ~i~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~r~l~G~~~~ 111 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKK-----------TLVITLLMMGIGTLLIGLLPSYA----TI-G-IWAPILLLLARLIQGFSLG 111 (394)
T ss_pred hhHHHHhhhhhhhhhhHH-----------HHHHHHHHHHHHHHHHhhCCChh----hh-H-HHHHHHHHHHHHHHHhhcc
Confidence 355677788777666542 25678888888877776643100 00 0 0112346677799999999
Q ss_pred HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 338 FTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 338 l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...+....++.+..|++.|+.+++++.....+|..+++.+...+
T Consensus 112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 112 GEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred ccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887888999999999999999999999999999988776554
No 199
>PRK15075 citrate-proton symporter; Provisional
Probab=96.52 E-value=0.024 Score=57.24 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=71.4
Q ss_pred HHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Q 015223 261 VPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTA 340 (411)
Q Consensus 261 ~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~ 340 (411)
+++.+.+.++++||+ -+..+.++.+++.+..++.+.... - + .....+++..-+++|+++....
T Consensus 73 ~~~~G~l~Dr~Grr~-----------~l~~~~~~~~~~~~l~~~~~~~~~----~-~-~~~~~~l~~~R~l~G~~~g~~~ 135 (434)
T PRK15075 73 AIVLGAYIDRVGRRK-----------GLIVTLSIMASGTLLIAFVPGYAT----I-G-LAAPLLVLLGRLLQGFSAGVEL 135 (434)
T ss_pred HHHHHHHhhhhchHH-----------HHHHHHHHHHHHHHHHHhCCcHHH----H-H-HHHHHHHHHHHHHhhccccccH
Confidence 455666666665542 357788888888777776531000 0 0 0001235666789999999888
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 341 VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 341 ~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+....++.+..|++.|+.++++......+|..+++.++..+
T Consensus 136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999998888777777776666654
No 200
>PRK09952 shikimate transporter; Provisional
Probab=96.50 E-value=0.013 Score=59.26 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=73.0
Q ss_pred HHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Q 015223 261 VPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTA 340 (411)
Q Consensus 261 ~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~ 340 (411)
.++.+++.++++|| +-+.+++++.+++.++.++....-. . + ..+++.++...+++|+++....
T Consensus 81 ~~~~G~l~Dr~Grr-----------~~l~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~~~l~~~R~l~G~~~g~~~ 143 (438)
T PRK09952 81 GVVFGHFGDRLGRK-----------RMLMLTVWMMGIATALIGLLPSFST----I-G-WWAPVLLVTLRAIQGFAVGGEW 143 (438)
T ss_pred HHHHHHHHHhhccH-----------HHHHHHHHHHHHHHHHHhcCCcHHH----H-H-HHHHHHHHHHHHHHHhhhcccH
Confidence 34455555555444 3356788888888777776531000 0 0 0112246677899999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 341 VGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 341 ~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+....++.+..|++.||.+++.......+|..++..+...+
T Consensus 144 ~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 144 GGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999988887665544
No 201
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.44 E-value=0.024 Score=55.34 Aligned_cols=106 Identities=8% Similarity=0.070 Sum_probs=74.8
Q ss_pred HHhhhHhHHhhhhhccCCCCCCCchhH-HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHH
Q 015223 261 VPLYDKFFVPFARKYTGHESGISPLQR-IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFT 339 (411)
Q Consensus 261 ~p~~~~l~~~~~~~~~~~~~~~s~~~k-~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~ 339 (411)
.|+.+.+.++...|+ ....+. +..+.++.++++..+++.. . ..+.+++...+++.+++-...
T Consensus 38 ~~~~g~~~Dr~~~~~------~Grr~~~l~~~~~~~~~~~~~l~~~~--------~---~~~l~~l~~~~~~~~~~~~~~ 100 (356)
T TIGR00901 38 KFLWSPLVDTVYLPF------FGRRRSWLVLTQVLLLSLLLILSFLV--------P---STDLPLLAGLAFLIAFFSATQ 100 (356)
T ss_pred HHHHHHHHhcccCCC------CCccHHHHHHHHHHHHHHHHHHHcCC--------c---chhHHHHHHHHHHHHHHHHHH
Confidence 666666665542211 111222 3456666666666665442 0 235666777778888888888
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 340 AVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 340 ~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++..+++.+..|++.|+.+.|.......+|..+++.++..+..
T Consensus 101 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 101 DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999988876643
No 202
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.38 E-value=0.032 Score=57.72 Aligned_cols=101 Identities=13% Similarity=0.021 Sum_probs=71.0
Q ss_pred HHHHHhhhHhHHhh-hhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHH
Q 015223 258 VILVPLYDKFFVPF-ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSE 336 (411)
Q Consensus 258 ll~~p~~~~l~~~~-~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige 336 (411)
....++.+++.++. ++| +-+..|.++.+++.+++++.. .+.+++....+++++|.
T Consensus 71 ~~~~~~~G~LaDr~~G~r-----------~~~~~g~~~~~ig~~l~~~~~-------------~~~~~l~~~~~l~gig~ 126 (500)
T PRK09584 71 YGLVAIGGWLGDKVLGTK-----------RVIMLGAIVLAIGYALVAWSG-------------HDAGIVYMGMATIAVGN 126 (500)
T ss_pred HHHHHHHHHHHHhccchH-----------HHHHHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHHHHHHhh
Confidence 33345667776663 443 235678888888877666531 13344556778899999
Q ss_pred HHHhhHHHHHHHHHhhhhH--HHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 337 MFTAVGLIEFFYKQSLKGM--QAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 337 ~l~~~~~~~~~~~~aP~~~--~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
.+..+...+++.+..|++. ++.+.++++...++|..+|+.+.+.+.
T Consensus 127 g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 127 GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9888777788999887643 445788889999999999988887663
No 203
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.38 E-value=0.00072 Score=70.38 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=2.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc----------
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---------- 84 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~---------- 84 (411)
...+|++|.++.++|..-+.+.-.+++=|..++++ -..+++++|....+|+++|.++++.+.+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46888899999999999999999998888877655 47789999999999999999999876321
Q ss_pred -----------c-cchhHHHHHHHHHHHHHHHHhhccccee
Q 015223 85 -----------S-GMDVGFGVSAAAMALGLFGVVSGTLYYR 113 (411)
Q Consensus 85 -----------~-g~~~~F~i~~~~~~l~~i~~~~~~~~~~ 113 (411)
. .|+.+|.+.+...++..+-++..-|+++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 2 3999999999887777776666655554
No 204
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.27 E-value=0.026 Score=57.49 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
-++.|++-.+++.+..+..+|..-|+.++.++|+.......+..+|+.+........
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence 467788888888888899999999999999999999999999999999988876654
No 205
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.17 E-value=0.0075 Score=60.57 Aligned_cols=86 Identities=13% Similarity=-0.008 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~-~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
+.+.++....+.+++.+...+.....+.+.++++. +...++. +.+..++|..+++.++|++.+.+||+..|.+
T Consensus 314 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~ 387 (420)
T PRK09528 314 GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLI 387 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHH
Confidence 34556667777888888777777788888887533 4555554 5677899999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 015223 94 SAAAMALGLFGVV 106 (411)
Q Consensus 94 ~~~~~~l~~i~~~ 106 (411)
.++..++..++.+
T Consensus 388 ~~~~~~i~~~~~~ 400 (420)
T PRK09528 388 LGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 7766555544433
No 206
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.094 Score=51.83 Aligned_cols=87 Identities=15% Similarity=0.020 Sum_probs=70.8
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH
Q 015223 284 PLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT 363 (411)
Q Consensus 284 ~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~ 363 (411)
..+-+.+|+.+.++|+.+..=... ..++..+....++++.|-.+...+.+.++....|++....=+.+.
T Consensus 77 yk~gi~lgL~l~avg~~lF~pAa~-----------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~ 145 (422)
T COG0738 77 YKAGIVLGLLLYAVGAALFWPAAS-----------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLA 145 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh-----------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHH
Confidence 334478999999999888764331 235666778889999999999999999999999998888888888
Q ss_pred HHHHhHHHHHHhHhhhhh
Q 015223 364 YCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 364 ~l~~~~G~~lg~~l~~~~ 381 (411)
....++|..+|+.+++..
T Consensus 146 q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 146 QAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 888899999999888754
No 207
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.94 E-value=0.17 Score=53.10 Aligned_cols=121 Identities=11% Similarity=0.147 Sum_probs=90.5
Q ss_pred cccCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q 015223 235 NNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSAL 314 (411)
Q Consensus 235 ~~~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~ 314 (411)
+.++| +. -...|+...+.+...+..|+++++.+-++||. -+..|.++..+|.++.+-.
T Consensus 71 ~~diG-~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----------~~i~g~~l~vvG~Iv~atA--------- 128 (599)
T PF06609_consen 71 NADIG-GS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----------FFIIGSLLGVVGSIVCATA--------- 128 (599)
T ss_pred HHhcC-CC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----------HHHHHHHHHHhHHHHhhcC---------
Confidence 34555 32 33567788888888899999999999888764 2577888999999888854
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 315 DSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 315 ~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++.-++...++.++|-....... ..+.+..|.+.|+.+.++......+....|+.+.+.+..
T Consensus 129 -----~~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~ 191 (599)
T PF06609_consen 129 -----QNMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA 191 (599)
T ss_pred -----CcHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence 256668888999999987777554 568999999999988877776655555566666665543
No 208
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.91 E-value=0.075 Score=54.73 Aligned_cols=107 Identities=7% Similarity=-0.010 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhhhHhHHhh-hhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPF-ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~-~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
.......+..++.+++.+++ ++|+ -+.+|.++.+++.++++..+ .+..++.....
T Consensus 53 ~~~~~~~l~~ligG~LaDRilGrrr-----------~iliG~il~~lg~lll~~~~-------------~~~~~~~l~l~ 108 (493)
T PRK15462 53 AYCSLVYVTPILGGFLADKVLGNRM-----------AVMLGALLMAIGHVVLGASE-------------IHPSFLYLSLA 108 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHHHHHHHHhh-------------cchhHHHHHHH
Confidence 33344555666778887776 4432 25788888888876555321 11222333445
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhh--HHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKG--MQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~--~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+..+|..+..+..++++.+.-|++ .|+...++.+...++|..+++.+.+.+.
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 566777766666667889998875 7888999999999999999988887764
No 209
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.049 Score=55.71 Aligned_cols=88 Identities=7% Similarity=0.077 Sum_probs=74.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH
Q 015223 285 LQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY 364 (411)
Q Consensus 285 ~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~ 364 (411)
.+.+..+.++.+++-++..... ..+.+.++..-+++|++|....|....+..+-+|+++|++..++.+
T Consensus 103 r~v~~~~~~~sa~~t~l~P~aa------------~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~ 170 (466)
T KOG2532|consen 103 RRVFFISGLISALLTLLTPLAA------------SIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILT 170 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH------------HhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence 3456788888888877777664 3456677888899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhHhhhhhccc
Q 015223 365 CSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 365 l~~~~G~~lg~~l~~~~~~~ 384 (411)
....+|..++-.+++.+...
T Consensus 171 ~g~q~g~v~~mp~sg~lc~s 190 (466)
T KOG2532|consen 171 AGSQLGTIITMPVSGLLCES 190 (466)
T ss_pred HHHHHHHHHHHHhHHHHhcc
Confidence 99999999998888877654
No 210
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.76 E-value=0.028 Score=55.76 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
.+.+.++....+.+++.|...+.....+.+. ++++ |..+.+++. ....+|..+|+.++|++.|++|+ ..|+
T Consensus 291 ~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~ 362 (382)
T TIGR00902 291 EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFV 362 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHH
Confidence 4556777788999999999999999999976 5433 577788875 46789999999999999999996 6676
Q ss_pred HHHHHHHHHHHHHh
Q 015223 93 VSAAAMALGLFGVV 106 (411)
Q Consensus 93 i~~~~~~l~~i~~~ 106 (411)
+.++..++++++..
T Consensus 363 ~~~~~~~~~~~~~~ 376 (382)
T TIGR00902 363 FMAIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555554433
No 211
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=95.71 E-value=0.04 Score=56.61 Aligned_cols=88 Identities=10% Similarity=0.103 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~ 92 (411)
.+.+.+++.=++.++..|...+...++.+++.|+++ ...+|++|.+..-..+.+||++.|.+.+..| .|++|+
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 345557777778999999999999999999999866 4789999999999999999999999988776 788988
Q ss_pred HHHHHHHHHHHHHhh
Q 015223 93 VSAAAMALGLFGVVS 107 (411)
Q Consensus 93 i~~~~~~l~~i~~~~ 107 (411)
...++.+++++++..
T Consensus 452 ~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 452 FLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777666643
No 212
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.64 E-value=0.045 Score=54.96 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=83.0
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+.++..+.-.+..|+.+.+.++..+|.+++ ..-+..|.++.+++++.+.... +.......+|+.
T Consensus 38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~ 103 (437)
T TIGR00792 38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTP--------DFSATGKLVYAY 103 (437)
T ss_pred HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCC--------CCCcchHHHHHH
Confidence 34556666778888999999988766554321 1124667777777776665432 100012367888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~ 379 (411)
..+++.+++..+..++..++..+.. |++.|+...+.......+|..+++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~ 157 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL 157 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988877767877776 5789999999888888888777665544
No 213
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.42 E-value=0.046 Score=54.23 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred HHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHHH
Q 015223 23 LYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGL 102 (411)
Q Consensus 23 l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~~ 102 (411)
..+.+++.|...+...+...+..++++ .+++.+++.....++|..+||.++|++.++.||+..|.+.++..++++
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 310 SAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 344455566666777777777765422 168899999999999999999999999999999999988776555543
No 214
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=95.25 E-value=0.59 Score=40.34 Aligned_cols=64 Identities=9% Similarity=0.184 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
+.+.+++.-++.|+|+.+.+.+.-.++.+...++.+++..|+++.....+..+|..+.-.+...
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~ 151 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG 151 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566788889999999999988888999999999999999999988889999998887776544
No 215
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.25 E-value=0.23 Score=49.26 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=62.4
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHH---HHHHHHHhhhhcccCCCccc-h
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMIS---AALMEKKRRDSALDSGKTLS-I 322 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~---~~~~~~~~~~~~~~~~~~~s-~ 322 (411)
+.+.++..+...+..|+.+++.++..||+. +..+.+..+++... ....+.. ... .
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~-----------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 99 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLISDKLGLKKH-----------LLWIISGLLVLFAPFFIYVFGPLL----------QSNIL 99 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-----------HHHHHHHHHHHHHHHHHHHhhhHH----------HHHHH
Confidence 456677778889999999999988876531 22233322222222 1111100 011 2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 323 FSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 323 ~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+......++.+++.....+...+++.+..++ ++...|......++|..+|+.+++.+
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhh
Confidence 2344556777888877777776666665443 23344555555566666666665544
No 216
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=95.11 E-value=0.14 Score=52.53 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=80.2
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
-+.....+-..-+++-++..|++.+++ ...-+.+|+.+.++=++.+.+++ ++|..
T Consensus 408 fGv~~a~~~~gEI~~~ffs~klI~kiG-----------Hv~v~~lgLa~~~~Rf~~~S~L~--------------n~W~v 462 (618)
T KOG3762|consen 408 FGVVSALCHAGEILFYFFSFKLIEKIG-----------HVNVMYLGLACNVGRFLYYSYLQ--------------NPWMV 462 (618)
T ss_pred eeehhhhhccchHHHHHHHHHHHHHhc-----------ccceeeehhhHHHHHHHHHHHhc--------------Cchhe
Confidence 344455555666677777777774443 23335677777777777777663 67777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHH-HhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCS-YSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~-~~~G~~lg~~l~~~~ 381 (411)
+|--+++++--.+++.+..+++...+||+++..++|+.... .++|--+|+.|++.+
T Consensus 463 LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~ 519 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFV 519 (618)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhh
Confidence 78889999999999988889999999999999999987643 466666666665554
No 217
>PRK09669 putative symporter YagG; Provisional
Probab=95.04 E-value=0.072 Score=53.97 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccch
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMD 88 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~-~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~ 88 (411)
.+.+.+++...+.++|.+...|...++++|..|.++.+ .++..+..++.+.+..++|..+|+.++|++-+..||.
T Consensus 317 ~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 317 SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566777888899999999999999999998743321 1222466889999999999999999999988777773
No 218
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=94.97 E-value=0.067 Score=53.68 Aligned_cols=84 Identities=14% Similarity=0.000 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHH-HHHHHHHHhhHHhhhhccccch------hHH
Q 015223 19 FFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFA-FSTGELVALTVLVWVQTHSGMD------VGF 91 (411)
Q Consensus 19 ~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~-iNlG~~ig~~l~g~l~~~~g~~------~~F 91 (411)
..++..+.++..|.+.+....++.+..|++. |.++.+++... ..+|..+|.+++|++.|++|-+ ..|
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~ 377 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF 377 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 3445567899999999999999999998765 68889988775 4599999999999999887644 456
Q ss_pred HHHHHHHHHHHHHHhhc
Q 015223 92 GVSAAAMALGLFGVVSG 108 (411)
Q Consensus 92 ~i~~~~~~l~~i~~~~~ 108 (411)
.+++...++..+.+...
T Consensus 378 ~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 378 LVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 66665555555555543
No 219
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.74 E-value=0.42 Score=48.96 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=69.3
Q ss_pred HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223 258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM 337 (411)
Q Consensus 258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~ 337 (411)
++.+.+.+.+-++++||. -+.+..++..++.++...... .-+...++.+-++.|+...
T Consensus 74 ~~Gs~~~~~la~~~GRK~-----------~l~~~~~l~~~~~~~~~~s~~-----------~~~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 74 MIGSFSSGLLADRFGRKN-----------ALLLSNLLAVLAALLMGLSKS-----------APSFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHhhcchH-----------HHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHhH
Confidence 344444455555555542 134555555555555544321 1356678899999999999
Q ss_pred HHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223 338 FTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 338 l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~ 379 (411)
+......-++.+.+|++.||.+..+..+...+|..+|..++.
T Consensus 132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 998666679999999999999999988888888888865554
No 220
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=94.22 E-value=3.6 Score=40.71 Aligned_cols=90 Identities=17% Similarity=0.050 Sum_probs=58.3
Q ss_pred cccccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 015223 8 CEEAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM 87 (411)
Q Consensus 8 ~~~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~ 87 (411)
+.+.-+.+...+.+.+.+.++|.|+ .|...++-++..+... |....-.+ .-..+|.++.-.+.=.+..++||
T Consensus 158 ~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~vm~~~gw 229 (528)
T KOG0253|consen 158 VISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW 229 (528)
T ss_pred HhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344455667778889999999999 9999998888877533 22222222 33445666666666556667899
Q ss_pred hh-HHHHHHHHHHHHHHHH
Q 015223 88 DV-GFGVSAAAMALGLFGV 105 (411)
Q Consensus 88 ~~-~F~i~~~~~~l~~i~~ 105 (411)
|| .|.+...+++++...+
T Consensus 230 r~~l~~~~~pl~~~a~f~~ 248 (528)
T KOG0253|consen 230 RYLLFTSSTPLMFAARFLV 248 (528)
T ss_pred HHHHHHHHhHHHHHHHHHh
Confidence 97 4555556655554443
No 221
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.09 E-value=0.21 Score=51.04 Aligned_cols=117 Identities=9% Similarity=0.015 Sum_probs=77.2
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCcc-chHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTL-SIFSI 325 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-s~~~l 325 (411)
++.....++...+..|+++.+-.|.. +..+-+.+|.+++.+|.++...++.. +. ..+++
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~----------~~k~Pli~s~ii~~~g~llY~~l~~~----------~~~~~y~m 133 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTG----------SVKKPLIVSFLIAIIGNLLYLALAYV----------PNGVKYLM 133 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccC----------CcccCHHHHHHHHHHHHHHHHHHHhc----------ccchHHHH
Confidence 45566678889999999998643221 22333689999999999999777631 23 67889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
..++++.|+|-.-...-= .+++..+-.+.|.++++.....+.+|..+|+.+...+...
T Consensus 134 L~~R~l~Gvg~~n~a~lR-~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 134 LVARILTGVGVGNFAVLR-AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred HHHHHHcCcCcccHHHHH-HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 999999999966555333 3555544444444555555555566666666666555443
No 222
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=93.65 E-value=0.23 Score=51.47 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=84.7
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+|+.++......+..|+...+.++++.| .-+.+|.+++++|++...+.+ ++|.+
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R-----------~v~i~G~~v~~~g~~lssF~~--------------~i~~l 137 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALCNRFGCR-----------TVMIAGGLVAALGLLLSSFAT--------------SLWQL 137 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhhcCch-----------HHHHHHHHHHHHHHHHHHHHh--------------hHHHH
Confidence 67778888877888899988877544433 335889999999999999874 56666
Q ss_pred HHHH-HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQF-LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~-~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
...| ++-|+|-.++..+... +...=.++.|++++|+-....++|..+=+.+....
T Consensus 138 ~lt~gvi~G~G~~~~~~paiv-iv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l 193 (509)
T KOG2504|consen 138 YLTFGVIGGLGLGLIYLPAVV-ILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYL 193 (509)
T ss_pred HHHHHHHhhccchhhhcchhh-hhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence 5555 8899999999966644 45577888899999999999998877766665543
No 223
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.61 E-value=0.19 Score=49.72 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAY-FAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y-~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
.+.+.+++...+.+++.+...+.......++ ++++ +.++++.+. ...++|..+||.++|++.|++|+. .|+
T Consensus 291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~ 362 (382)
T PRK11128 291 TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFW 362 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHH
Confidence 3566677788888999998888888777765 3222 466777765 556788899999999999999874 555
Q ss_pred HHHHHHHHH
Q 015223 93 VSAAAMALG 101 (411)
Q Consensus 93 i~~~~~~l~ 101 (411)
+.+...+.+
T Consensus 363 ~~~~~~~~~ 371 (382)
T PRK11128 363 VMALVALPA 371 (382)
T ss_pred HHHHHHHHH
Confidence 555443433
No 224
>PRK11462 putative transporter; Provisional
Probab=93.56 E-value=0.44 Score=48.69 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=77.0
Q ss_pred HHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHH
Q 015223 258 VILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEM 337 (411)
Q Consensus 258 ll~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~ 337 (411)
.+.-|+++.+.++...|.+| +.+. +..|.+..++++.++.... +.+......|....|++..++--
T Consensus 59 ai~Dp~~G~~~D~t~~r~Gr-----~rp~-il~g~i~~~i~~~llf~~p--------~~s~~~~~~y~~~~~~~~~~~~t 124 (460)
T PRK11462 59 AISDPCMGLLADRTRSRWGK-----FRPW-VLFGALPFGIVCVLAYSTP--------DLSMNGKMIYAAITYTLLTLLYT 124 (460)
T ss_pred HHHhhhheehhccCCCCCCC-----cchh-HhHHHHHHHHHHHHHHhCC--------CCCcchHHHHHHHHHHHHHHHHH
Confidence 35577777777765544432 1222 4567777777776655431 10001236788999999999999
Q ss_pred HHhhHHHHHHHHHhh-hhHHHHHHHHHHHHHhHHHHHHhHhhhh
Q 015223 338 FTAVGLIEFFYKQSL-KGMQAFLTAMTYCSYSFGFYLSSLLVSF 380 (411)
Q Consensus 338 l~~~~~~~~~~~~aP-~~~~g~~~g~~~l~~~~G~~lg~~l~~~ 380 (411)
+..++-.++....++ ++.|+..++.......+|..+++.+...
T Consensus 125 ~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p 168 (460)
T PRK11462 125 VVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP 168 (460)
T ss_pred HHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888899999988 8999999999888888888777766543
No 225
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.77 Score=46.38 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=60.3
Q ss_pred cccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhh----HHHHHHHHHHHHHHHHhhHHhhhhcc-
Q 015223 10 EAKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSS----YFNAAYFAFSTGELVALTVLVWVQTH- 84 (411)
Q Consensus 10 ~~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~----~f~~~y~~iNlG~~ig~~l~g~l~~~- 84 (411)
+++..-...+...|.++++|.|+=.|.+.+...+.-.+.. |+. .|....+++-.|+.++.++..-+...
T Consensus 138 ~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~ 211 (538)
T KOG0252|consen 138 TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIF 211 (538)
T ss_pred CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccC
Confidence 3444556778889999999999999999888776544322 444 56666777777777777766654321
Q ss_pred ----------ccchhHHHHHHHHHHHHHHHHhh
Q 015223 85 ----------SGMDVGFGVSAAAMALGLFGVVS 107 (411)
Q Consensus 85 ----------~g~~~~F~i~~~~~~l~~i~~~~ 107 (411)
.=||..|.+.++ .++++++.
T Consensus 212 ~~~~~~~~ld~vWRl~~glg~v---pa~~~ly~ 241 (538)
T KOG0252|consen 212 NGPSTYPHLDGVWRIIFGLGAV---PALLVLYF 241 (538)
T ss_pred CCCCCchHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 348999987653 34444444
No 226
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.86 Score=45.36 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=73.8
Q ss_pred CeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCcc
Q 015223 241 NFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTL 320 (411)
Q Consensus 241 g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.+++++...+..+.++..+.+ --.+-.+..|. .+.+-..+++++..+-++..++... ..
T Consensus 43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~-----------~~ 103 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT-----------YP 103 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-----------CC
Confidence 34577777666666655554432 11112222332 3334457788888888888887742 23
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHh
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSS 375 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~ 375 (411)
+.|+++..-++.|++-.-..+++ ..+.+.-||+.+|.++|++- ..++|-.+..
T Consensus 104 ~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q 156 (417)
T COG2223 104 STWQLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLALGIAG-AGNLGVAVAQ 156 (417)
T ss_pred chHHHHHHHHHHhcccceehccc-ccccccCChhhhhHHHHHhc-cccccHHHHH
Confidence 44555555678888887777777 68999999999999999987 5555544443
No 227
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=12 Score=38.10 Aligned_cols=119 Identities=11% Similarity=0.016 Sum_probs=64.3
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc--ccCCC----ccc
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA--LDSGK----TLS 321 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~--~~~~~----~~s 321 (411)
.+..++.+.+-+..-+.+-.+..+.||.++ +....-+.+|.++..+++++..+-.. .|.+ +.++. ..+
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~~p--~dap~~~t~~~~~~~~~~ 352 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLSFP--NDAPLRPTDSPPLLFTPS 352 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcccc--ccCCCCCCcccccccccc
Confidence 344555555555555555555555554321 22222246676666666555544321 1111 11110 112
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHH
Q 015223 322 IFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYL 373 (411)
Q Consensus 322 ~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~l 373 (411)
......-++++|+++.+.....+..+.... ++.+..+..+.-+.+++++.+
T Consensus 353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v 403 (461)
T KOG3098|consen 353 YYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV 403 (461)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence 333445569999999999988888888888 444555555555555555544
No 228
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=92.72 E-value=2.7 Score=41.89 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHH---HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH
Q 015223 288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFS---ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTY 364 (411)
Q Consensus 288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~---li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~ 364 (411)
+-.|+++...+..++........+...+++ ..++.| ....+.+.|+|-.....+..+...+.+||+.|+...++.+
T Consensus 53 I~~G~~~~~~g~~~ap~a~~~l~~~~~~~~-~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw 131 (403)
T PF03209_consen 53 IWGGTLLQAGGLAIAPFALLLLAESGQQSS-GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVW 131 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccccccc-cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHH
Confidence 567888877777776665533221111111 123333 4577889999999999888899999999999999999999
Q ss_pred HHHhHHHHHHhHhhhhh
Q 015223 365 CSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 365 l~~~~G~~lg~~l~~~~ 381 (411)
.+.-+|..++..+.+.+
T Consensus 132 ~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 132 VMLIVGIIVSAIVFGRL 148 (403)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887754
No 229
>PRK10429 melibiose:sodium symporter; Provisional
Probab=92.47 E-value=0.63 Score=47.64 Aligned_cols=117 Identities=10% Similarity=0.074 Sum_probs=78.4
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
.+..+..+.-.+.-|+++.+.++...|.+++ +| . +..|.+..++++.++.... +.+......|+..
T Consensus 46 ~i~~i~ri~dai~dp~~G~lsD~t~sr~Grr----rp-~-il~g~i~~~i~~~llf~~p--------~~~~~~~~~~~~~ 111 (473)
T PRK10429 46 TLFLVARIWDAINDPIMGWIVNNTRSRWGKF----KP-W-ILIGTLANSVVLFLLFSAH--------LFEGTAQYVFVCV 111 (473)
T ss_pred HHHHHHHHHHHHhhchheeehhcCCCCCCCc----ch-h-HhhhhHHHHHHHHHHHcCC--------CCCccHHHHHHHH
Confidence 3455555667778888888888654444321 11 2 4667777777766654321 1000124678888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhh
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLV 378 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~ 378 (411)
.|++..++--+..++..++..+.+ +++.|....+.-.....+|+.+.+.+.
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988889999998 699999988875666666666555443
No 230
>PRK09848 glucuronide transporter; Provisional
Probab=91.69 E-value=0.56 Score=47.48 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccc
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGM 87 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~-~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~ 87 (411)
+.+.+++++.+.++|.+...+...++..|..|+++.| .++.++.+++.+.+..++|..+|+.+.+++-+..||
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3556677788899999999999999999998764321 112257788999999999999999999987666665
No 231
>PTZ00207 hypothetical protein; Provisional
Probab=91.63 E-value=0.52 Score=49.68 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH-HhhHHhhhhccccchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELV-ALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~i-g~~l~g~l~~~~g~~~~F~ 92 (411)
.+.+.+++++.+.++|.+.+.+.....+.+.|++ + |+.+.++.....++|+.+ +++..+++.+ +|+..|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-~------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-N------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4678889999999999999999889999999962 2 799999999999999975 6666666654 5666666
Q ss_pred HHHHHHH
Q 015223 93 VSAAAMA 99 (411)
Q Consensus 93 i~~~~~~ 99 (411)
+.++..+
T Consensus 189 ~l~vl~~ 195 (591)
T PTZ00207 189 FLMSFAL 195 (591)
T ss_pred HHHHHHH
Confidence 6554433
No 232
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=91.21 E-value=0.68 Score=44.63 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+..+++..+++.+.|-.+..+..+.++....|++.++..+++.....++|..+||.+++.+-
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999664
No 233
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.16 E-value=0.38 Score=45.66 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc---chhHHHHHHH
Q 015223 20 FLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG---MDVGFGVSAA 96 (411)
Q Consensus 20 ~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g---~~~~F~i~~~ 96 (411)
|++..+.++...+.....-++++-..|+++ .+.+|+..|..-|+|-.+.|+++|.+.++-| |--+|.+...
T Consensus 356 y~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 356 YTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 577888888888877778888888888655 8999999999999999999999999988755 4445655555
Q ss_pred HHHHHHHHH
Q 015223 97 AMALGLFGV 105 (411)
Q Consensus 97 ~~~l~~i~~ 105 (411)
.+.+..+..
T Consensus 430 ~~aL~svgi 438 (459)
T KOG4686|consen 430 LMALTSVGI 438 (459)
T ss_pred HHHHHHHHH
Confidence 554444433
No 234
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=90.39 E-value=2.7 Score=41.31 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=81.1
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+.+.+++-+..-+++|+..++- ||. .+-+-+..++++.++|.++=.. -+.+.+
T Consensus 49 aGlLTtLPll~fg~~ap~a~~La----r~~-------g~er~l~~~Llli~~G~~iR~~---------------~~~~~L 102 (395)
T COG2807 49 AGLLTTLPLLAFGLFAPAAPRLA----RRF-------GEERSLFLALLLIAAGILIRSL---------------GGLPLL 102 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH----HHH-------hhHHHHHHHHHHHHHHHHHHhc---------------ccHHHH
Confidence 34455666666667777766654 332 2334355666655555433221 246668
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcccc
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVT 385 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s 385 (411)
+...++.+.|....++-+.+++-+.-|++. +.+||+|..+.++|..+++.+.--+....
T Consensus 103 ~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 103 FLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 888899999999999888888999998876 59999999999999999999888776654
No 235
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=90.37 E-value=1.7 Score=43.91 Aligned_cols=161 Identities=16% Similarity=0.058 Sum_probs=102.4
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCCc---cccchhHHHHHHHHHhhhHhHHhhhhhccCC
Q 015223 202 VLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPPA---SLQSIPYIMLVILVPLYDKFFVPFARKYTGH 278 (411)
Q Consensus 202 ~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~~---~l~~in~l~ill~~p~~~~l~~~~~~~~~~~ 278 (411)
+++.+..+....-+.|....+..|-|+++ +| +|-. ..+.+-|+.-++.+|+.+...++...|.+++
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-------lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR 101 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQS-------LG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHH-------cC----CCcccccccccccccccceecccccccccccccccccc
Confidence 33333334444456677666655555443 22 3433 3467778888999999999998887776542
Q ss_pred CCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCC---CccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH
Q 015223 279 ESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSG---KTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 355 (411)
Q Consensus 279 ~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~ 355 (411)
+|. +.++.++.+++++++....-+-.-...+.. .+.++...++.+.|+-++--...-+.=++..+.+-+..
T Consensus 102 ----RPf--I~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~ 175 (498)
T KOG0637|consen 102 ----RPF--ILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA 175 (498)
T ss_pred ----cch--HHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh
Confidence 222 477888888888877765422111111101 12455567778888888886676334378888755554
Q ss_pred HHH-HHHHHHHHHhHHHHHHhHhhh
Q 015223 356 QAF-LTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 356 ~g~-~~g~~~l~~~~G~~lg~~l~~ 379 (411)
|-. +++...+..++||.+|=.++.
T Consensus 176 ~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 176 KKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhccchhHHHHHHhcceeeeeccc
Confidence 445 999999999999999977765
No 236
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=89.85 E-value=0.97 Score=46.31 Aligned_cols=79 Identities=11% Similarity=-0.076 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-----chhHHH
Q 015223 18 IFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-----MDVGFG 92 (411)
Q Consensus 18 ~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-----~~~~F~ 92 (411)
......++.+++.|........++.+.-+++. +++.|+++....|+|..+++.+++++.++.| ++..|.
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~ 426 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWL 426 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHH
Confidence 33444556677777777777888888888755 5889999999999999999999999999888 776666
Q ss_pred HHHHHHHHHH
Q 015223 93 VSAAAMALGL 102 (411)
Q Consensus 93 i~~~~~~l~~ 102 (411)
...+.....+
T Consensus 427 ~i~i~~~~~l 436 (468)
T TIGR00788 427 LILGHSLAPL 436 (468)
T ss_pred HHHHHHHHHH
Confidence 5544444333
No 237
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=89.72 E-value=2.8 Score=42.26 Aligned_cols=63 Identities=8% Similarity=-0.067 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 83 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~ 83 (411)
..++...|-.+.+...-.+.-.-+=+.+-+|++++ |..+-.+--++.-+|.++|.++.+.+..
T Consensus 139 ~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 139 RRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 33677788888888888887777777788898744 6777777777777777777777766643
No 238
>PF13347 MFS_2: MFS/sugar transport protein
Probab=89.44 E-value=1.2 Score=44.87 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=61.2
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccch
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPK-QSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMD 88 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~-~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~ 88 (411)
.+.+.+++...+.++|.|...+...++.+|..|.++.| .++..+..++.+.+...+|..++..+.+++.+..||.
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 56788889999999999999999999999999864422 1222577899999999999999999999886655553
No 239
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=88.84 E-value=2 Score=44.48 Aligned_cols=103 Identities=9% Similarity=0.012 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
+..++..-+++.+-++++||. -+..++++..++-+..++. .+++.+++.-++.|+
T Consensus 129 ~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a--------------~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 129 LGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA--------------PNYWMFLIFRFLSGF 183 (521)
T ss_pred HHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHHh
Confidence 444444444555555555542 1355666666655555543 378888899999999
Q ss_pred HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+..-.......++.+..+++.|+.++.+ ......++.+++.+++.+..
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 9999987777899999999999999999 66666666666666665533
No 240
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=88.61 E-value=0.0074 Score=61.03 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223 254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG 333 (411)
Q Consensus 254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 333 (411)
.+..++.+.+.+.+-++++||.. +.++.++..++.++.++... ..+++++....++.|
T Consensus 56 ~~g~~~G~~~~g~~~d~~GRk~~-----------~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~R~~~G 113 (451)
T PF00083_consen 56 FIGAIVGALIFGFLADRYGRKPA-----------LIISALLMIIGSILIAFAPS-----------YNNFWMLLIGRFLIG 113 (451)
T ss_pred Hhhhccccccccccccccccccc-----------cccccccccccccccccccc-----------ccccccccccccccc
Confidence 34455556666666666665531 35677777777776666420 126778888899999
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 334 LSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 334 ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+|-....+....++.+.+|++.||.+..+......+|..++..+...+..
T Consensus 114 ~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 114 FGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999887777899999999999999999999999999888877665533
No 241
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=88.31 E-value=3.5 Score=43.42 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhHHHHHHHHhhcc-cCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhH
Q 015223 214 IIFNTILAQLQTFSVQQGSAMNN-KLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGL 292 (411)
Q Consensus 214 ~~~~~~~~q~~s~~~~~~~~~~~-~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~ 292 (411)
.+.|..+.|....++-+..-+.. +.. |+.+-.++....|.+.++++.|....+.++ + |. -+ .+..++-
T Consensus 195 fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~---~----p~-gs--p~t~i~~ 263 (571)
T KOG1237|consen 195 FFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYK---K----PR-GS--PKTRIGQ 263 (571)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEee---C----CC-CC--chhHHHH
Confidence 34566666554444333322221 223 577778888999999998888764443221 1 11 12 3456788
Q ss_pred HHHHHHHHHHHH
Q 015223 293 FLATFSMISAAL 304 (411)
Q Consensus 293 ~l~~l~~~~~~~ 304 (411)
++.+.+.-....
T Consensus 264 Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 264 VLVAAAFKRKAV 275 (571)
T ss_pred HHHHHHHHHhcc
Confidence 887777776543
No 242
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=87.40 E-value=1.8 Score=39.47 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHhhHHhhhhcc--ccchhH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYF-AFSTGELVALTVLVWVQTH--SGMDVG 90 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~-~iNlG~~ig~~l~g~l~~~--~g~~~~ 90 (411)
.....+.+.+.+.+++.|...|...+++.+.+++ . ..|...++.... ..++|..+++.+++++... .+|+..
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3566777788889999999999999999999986 2 126888888888 6888999999888777653 688887
Q ss_pred HHHHHHHH
Q 015223 91 FGVSAAAM 98 (411)
Q Consensus 91 F~i~~~~~ 98 (411)
|.+.....
T Consensus 167 ~~~~~~~~ 174 (338)
T COG0477 167 FLLAALLG 174 (338)
T ss_pred HHHHHHHH
Confidence 76665443
No 243
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=86.83 E-value=0.12 Score=53.94 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=3.0
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHhhhhc----c------------c------------------CC--CccchHHHHHH
Q 015223 285 LQRIGFGLFLATFSMISAALMEKKRRDSA----L------------D------------------SG--KTLSIFSITPQ 328 (411)
Q Consensus 285 ~~k~~~G~~l~~l~~~~~~~~~~~~~~~~----~------------~------------------~~--~~~s~~~li~~ 328 (411)
++-+++|.+++++|.++.++.+-....+. . + ++ ....+++++.+
T Consensus 68 prwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g 147 (539)
T PF03137_consen 68 PRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILG 147 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHH
Confidence 34489999999999999988763221110 0 0 00 01234568888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
.++.|+|..-..+-..+++-+.++++..+.+.|+.+....+|..+|-.+++..-+
T Consensus 148 q~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 148 QLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ----SSS------------------------------------------------
T ss_pred HHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 9999999999986666999999999999999999999999999888777765443
No 244
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=84.66 E-value=46 Score=33.37 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++|.++.-.+.-|+-.+...+.....+.+..|++.|-+.+|.....-++|..+++.++-.+..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455555566777888888886666788999999999999999999999999999998877654
No 245
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=84.33 E-value=3.6 Score=40.55 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=64.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhh---HHHHHHHHHH
Q 015223 288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKG---MQAFLTAMTY 364 (411)
Q Consensus 288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~---~~g~~~g~~~ 364 (411)
+.+|.++..+|.+++.+...- .......+...+..+..++++|.+++-|....+..+|-+++ .+..+...++
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~-----~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIP-----PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTS-----SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhc-----chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHH
Confidence 577888889998886665420 00000234556778888999999999999999999998876 4556667788
Q ss_pred HHHhHHHHHHhHhhhhhc
Q 015223 365 CSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 365 l~~~~G~~lg~~l~~~~~ 382 (411)
...++|..++..+...+.
T Consensus 79 ~~in~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHHHHCCCHHH
T ss_pred HHHhhhhHhhcccchhhc
Confidence 899999999987777665
No 246
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=83.79 E-value=11 Score=34.07 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hHHHHHHHHHHH-HHhHHHHHHhHhhhhhcc
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLK-GMQAFLTAMTYC-SYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~-~~~g~~~g~~~l-~~~~G~~lg~~l~~~~~~ 383 (411)
+.++++...++.++++....+....++.+..|+ +.++...+.... ...+|..+++.+......
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777778999998888888999999998 778888888877 577888888866665543
No 247
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=82.67 E-value=2.8 Score=41.98 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=62.8
Q ss_pred HHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHHHHHHHHH
Q 015223 21 LALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFGVSAAAMA 99 (411)
Q Consensus 21 ~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~i~~~~~~ 99 (411)
+.=+++++..|...+...+..++..|+++ -.++|++|.+..-.++.+||.+.+.+.+..| -|.+++.-.+++.
T Consensus 346 i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~ 419 (438)
T COG2270 346 ILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLL 419 (438)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33467899999999999999999999876 3779999999999999999999998876543 4566655555555
Q ss_pred HHHHHHh
Q 015223 100 LGLFGVV 106 (411)
Q Consensus 100 l~~i~~~ 106 (411)
++++++.
T Consensus 420 iGl~~L~ 426 (438)
T COG2270 420 IGLLLLL 426 (438)
T ss_pred hhHhhEE
Confidence 5555444
No 248
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=81.94 E-value=0.067 Score=54.06 Aligned_cols=80 Identities=11% Similarity=-0.003 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc---ccchhH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH---SGMDVG 90 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~---~g~~~~ 90 (411)
.+...+.+++.++++|.|+..+....++.+..+++. |+....+.....++|.+++..++-.+.+. .+||+.
T Consensus 100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 173 (451)
T PF00083_consen 100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRIL 173 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc
Confidence 378889999999999999999999999999887644 78888899999999999888776544433 459999
Q ss_pred HHHHHHHHH
Q 015223 91 FGVSAAAMA 99 (411)
Q Consensus 91 F~i~~~~~~ 99 (411)
+.++.+..+
T Consensus 174 ~~~~~~~~l 182 (451)
T PF00083_consen 174 LIFGAIPSL 182 (451)
T ss_pred ccccccccc
Confidence 987775543
No 249
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=78.37 E-value=27 Score=31.40 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhccc---CCCccchHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALD---SGKTLSIFSITPQ 328 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~s~~~li~~ 328 (411)
.|.+.+.+..++..++.++..+|+ .+..++..+++-..++....+............ ...........+.
T Consensus 107 ~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 179 (205)
T PF01891_consen 107 ANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAGDYPWMALVQAYLPS 179 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 455656666666777677755553 122334444443444444333333222111111 0112334457788
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhh
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLK 353 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~ 353 (411)
+.++++.|.+++-...++..+.-|+
T Consensus 180 ~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 180 HLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999996665777777664
No 250
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=78.24 E-value=3.6 Score=41.37 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhHHhhhhccccchhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~-~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~ 92 (411)
.+.+...+.-.+-++-.+..-..+.-.+++.+|++- ..+.+.+ +..+..+|..+.+.++|++.|++|++-.|+
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyl 383 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYL 383 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHH
Confidence 445666677777777777888888888999998532 3456666 468889999999999999999999998887
Q ss_pred HHHHHHHHHHHH
Q 015223 93 VSAAAMALGLFG 104 (411)
Q Consensus 93 i~~~~~~l~~i~ 104 (411)
+-+...+...++
T Consensus 384 img~iv~~~~li 395 (412)
T PF01306_consen 384 IMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766544434333
No 251
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=77.08 E-value=21 Score=36.21 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=59.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hhhHHHHHHHHHH
Q 015223 288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQS---LKGMQAFLTAMTY 364 (411)
Q Consensus 288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~a---P~~~~g~~~g~~~ 364 (411)
+.+|.++.+++.+.++.... . ..+........++.++|..+..+..-+.+.+.+ |++ +|..++..+
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~---------~-~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~ 130 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPA---------S-ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVW 130 (433)
T ss_pred HHHHHHHHHHHHHHHHhccc---------c-cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHH
Confidence 56777777666666665531 0 124444555667788888888776656666554 555 889999999
Q ss_pred HHHhHHHHHHhHhhhhhcc
Q 015223 365 CSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 365 l~~~~G~~lg~~l~~~~~~ 383 (411)
..+.+|+.++..+++....
T Consensus 131 ~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 131 GVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred HHHHHHHHHHHHhhhhhhh
Confidence 9999999999988876543
No 252
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=73.31 E-value=28 Score=35.64 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHH
Q 015223 254 YIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFG 333 (411)
Q Consensus 254 ~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ 333 (411)
.+..++.+|+.+.+.++++||. ++..-..+.+ +.-++..+ ..||++. +.+
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~--------~L~~~~~~~~---l~~~~~~~----------------~~~~~~~---~~~ 121 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKV--------VLLLPLFGTI---LPALCLLF----------------QGYWFFL---LLG 121 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhh--------hHHHHHHHHH---HhHHHHHH----------------HHHHHhh---hcc
Confidence 4677888999999999888763 2222222222 22222222 2255544 333
Q ss_pred HHHHHH--hhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 334 LSEMFT--AVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 334 ige~l~--~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+.-.+. .....+++++...++.|....|+...+...+..+++.+++...+
T Consensus 122 l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 122 LSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred cccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333222 24455789999999999999999999888888888888876654
No 253
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=72.86 E-value=36 Score=32.00 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHhhh---h--ccccchhHHHHHHHHHHHHHHHHhhcccceec
Q 015223 56 LSSYFNAAYFAFSTGELVALTVLVWV---Q--THSGMDVGFGVSAAAMALGLFGVVSGTLYYRN 114 (411)
Q Consensus 56 r~~~f~~~y~~iNlG~~ig~~l~g~l---~--~~~g~~~~F~i~~~~~~l~~i~~~~~~~~~~~ 114 (411)
|...-.+.-++-|+|+++.-+.--.- + -.-.|++++.+.+++.++-++++...-++++.
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~ 67 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDI 67 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45555666788888888765432111 1 12359999999988887777887776666643
No 254
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=71.27 E-value=1.3e+02 Score=30.97 Aligned_cols=41 Identities=0% Similarity=-0.010 Sum_probs=35.1
Q ss_pred chhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh
Q 015223 36 NMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 82 (411)
Q Consensus 36 ~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~ 82 (411)
.--++..|.+..++ -+|.|.+++.+.|+|..+|+.+..++.
T Consensus 149 lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678889998654 477999999999999999999998876
No 255
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.31 E-value=7.2 Score=41.98 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=75.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHh----hhhcc-------c---------C----------------CCcc--chHHHH
Q 015223 285 LQRIGFGLFLATFSMISAALMEKKR----RDSAL-------D---------S----------------GKTL--SIFSIT 326 (411)
Q Consensus 285 ~~k~~~G~~l~~l~~~~~~~~~~~~----~~~~~-------~---------~----------------~~~~--s~~~li 326 (411)
++-+++|.++++++.++.++.+..- ++... . + +... .+..++
T Consensus 162 Pr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff 241 (735)
T KOG3626|consen 162 PRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFF 241 (735)
T ss_pred cceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHH
Confidence 3447999999999999999886321 11000 0 0 0011 223477
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
.+.++.|+|+--+.+-..+++-+.+-++....+.|+.+.+..+|-++|-+++++..+.
T Consensus 242 ~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~l 299 (735)
T KOG3626|consen 242 LGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKL 299 (735)
T ss_pred HHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHe
Confidence 8889999999999966668999999999999999999999999999888888876654
No 256
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=69.30 E-value=13 Score=38.07 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHH
Q 015223 259 ILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMF 338 (411)
Q Consensus 259 l~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l 338 (411)
+.-|+++.+.++..+|++| .+ +. +..|.+-.++.+.++.... +-+...+..|....|.+++++--+
T Consensus 63 i~DP~~G~i~D~t~~r~Gr----fR-P~-lL~g~ip~~i~~~l~F~~p--------~~~~~~k~~ya~vtY~l~~l~YT~ 128 (467)
T COG2211 63 ITDPIMGFIVDRTRSRWGR----FR-PW-LLWGAIPFAIVAVLLFITP--------DFSMTGKLIYALVTYMLLGLGYTL 128 (467)
T ss_pred Hhcchheeeeccccccccc----cc-HH-HHHHhHHHHHHHHHHHcCC--------CcccCcchHHHHHHHHHHHHHHHh
Confidence 3456666666655555443 12 23 3556555555444444332 101135788888999999999999
Q ss_pred HhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 339 TAVGLIEFFYKQS-LKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 339 ~~~~~~~~~~~~a-P~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+.++--++..... .+++|....+.......+|+.+...+...+.+
T Consensus 129 vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 129 VNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred eeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9977768888884 57889999999999999998888877765533
No 257
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=69.01 E-value=23 Score=34.74 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=61.5
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHH-HHHHHHhhHHhhhhccccc--hh
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFS-TGELVALTVLVWVQTHSGM--DV 89 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iN-lG~~ig~~l~g~l~~~~g~--~~ 89 (411)
..+.+.+.+++++-++++.+....--+-...+.++++-+++. +..-|+.-....| +-+.++-+++-++.+..+. ..
T Consensus 118 ~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~-L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 118 SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW-LSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 456889999999999999998888777655554444322111 3444444332223 3344455555566665555 67
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 015223 90 GFGVSAAAMALGLFGVVSGTL 110 (411)
Q Consensus 90 ~F~i~~~~~~l~~i~~~~~~~ 110 (411)
.|..+.++..++.+.....++
T Consensus 197 PF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred hHHHHHHHHHHHHHHHHhccc
Confidence 999988887777776654444
No 258
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=65.94 E-value=99 Score=30.04 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhc-----ccCCCc-------
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSA-----LDSGKT------- 319 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~-----~~~~~~------- 319 (411)
.|.+.+.+..++..+++++..+|+. .+....+..+++-..++....++....-.-.+ ..++.+
T Consensus 108 aN~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~~~~~~~ 182 (322)
T PRK07331 108 ANCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPLYSPYPL 182 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCccccccchH
Confidence 3445444555667777777766542 12223334344444444444443332211110 011111
Q ss_pred -cchHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhhhhH
Q 015223 320 -LSIFSITPQFLIF-GLSEMFTAVGLIEFFYKQSLKGM 355 (411)
Q Consensus 320 -~s~~~li~~~~l~-~ige~l~~~~~~~~~~~~aP~~~ 355 (411)
....-+.+.++.+ ++.|.++......++.|.-|+-.
T Consensus 183 ~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 183 SVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 1222356677776 99999999777789999988765
No 259
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=63.72 E-value=1e+02 Score=28.30 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.9
Q ss_pred hHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhhhhHHH
Q 015223 322 IFSITPQFLIF-GLSEMFTAVGLIEFFYKQSLKGMQA 357 (411)
Q Consensus 322 ~~~li~~~~l~-~ige~l~~~~~~~~~~~~aP~~~~g 357 (411)
..-+.+.++.+ ++.|.++......++.+.-||+.-+
T Consensus 183 ~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l~ 219 (230)
T PRK11909 183 IPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLLY 219 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhc
Confidence 44567778887 9999999977778888886776543
No 260
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=60.21 E-value=43 Score=31.28 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=61.0
Q ss_pred chhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH
Q 015223 284 PLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT 363 (411)
Q Consensus 284 ~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~ 363 (411)
|..-+.+|.++..+|+.+.+..-..+. + ..+.|.+.....+.+.|......+...-..+.-|+ .||.+.|+-
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~i---~----~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgil 136 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGRI---P----SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGIL 136 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcc---C----ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhh
Confidence 334467888888888888777642111 0 24555565666777788777776655556677775 799999998
Q ss_pred HHHHhHHHHHHhHhhhhh
Q 015223 364 YCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 364 ~l~~~~G~~lg~~l~~~~ 381 (411)
-...+++..+=+.+...+
T Consensus 137 k~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 137 KGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred hHHHHhHHHHHHHHHHHH
Confidence 888888877766555544
No 261
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=59.51 E-value=22 Score=36.70 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=47.2
Q ss_pred cchHH---HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhH
Q 015223 320 LSIFS---ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSL 376 (411)
Q Consensus 320 ~s~~~---li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~ 376 (411)
++.++ ++.+|++.++.--..+++.++|-++.++|..-|+||.+.+..+++|+..-..
T Consensus 400 v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~ 459 (544)
T PF13000_consen 400 VPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRT 459 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHH
Confidence 44444 5577888888888888999999999999999999999999999998765543
No 262
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=59.15 E-value=30 Score=35.55 Aligned_cols=70 Identities=13% Similarity=0.029 Sum_probs=51.4
Q ss_pred HHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHH
Q 015223 26 VAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMAL 100 (411)
Q Consensus 26 ~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l 100 (411)
.++..-++...-.+.+.+++|+.++ |.++++-+...+|+-.++..++++.+.+++||...-.+.-+.+.+
T Consensus 276 y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 276 YGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444455566666788888875432 799999999999999988888889999999998766554444333
No 263
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=57.85 E-value=1.8e+02 Score=30.13 Aligned_cols=40 Identities=3% Similarity=0.059 Sum_probs=32.6
Q ss_pred hhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223 38 IAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 83 (411)
Q Consensus 38 ~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~ 83 (411)
-++.-|.++.++ -++.|.+++.+.|+|..++..+..++.+
T Consensus 166 W~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667776544 4789999999999999999999888877
No 264
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=57.81 E-value=1.4e+02 Score=27.22 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhccc-CCCccc----hHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALD-SGKTLS----IFSIT 326 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~s----~~~li 326 (411)
.|.+.+.+..++.++++++..+|++. | ....-+..|.+=..++.+..++.-.. ..+.. .+...+ .....
T Consensus 110 ~N~l~m~~~~~~~~~~~~~~~~~~~l-~---~~v~~f~~gf~~~~l~~~~~~~~l~l--~~~~~~~~~~~~~~~~~~~~~ 183 (214)
T TIGR00123 110 ANGFSMGVIGPFVGWIVYKLACRAGL-R---RDVAVFLAAMLGDLATYVVTSVQLAL--AFPIPHAGFTGSVVKFMGIFA 183 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-c---hHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcccchHHHHHHHHHHHH
Confidence 35566666677788888887766411 1 11222233333333322222221100 01010 000011 23344
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhH
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGM 355 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~ 355 (411)
+.++.+++.|.++......++.|.-|+-.
T Consensus 184 ~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 184 YTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 66678899999999777789999988753
No 265
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=56.26 E-value=15 Score=38.22 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHH-HHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAA-YFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~-y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
++|..+..=+++++..+.+..++.+.+.+..||+- |.++-++. ..--.+|--+|.+++|.+.+.++=+..|-+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 34555556688999999999999999999999865 33333332 222345666677888888888888888888
Q ss_pred HHHHHHHHHHHHhhcccce
Q 015223 94 SAAAMALGLFGVVSGTLYY 112 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~ 112 (411)
.++..++.++.+....+.+
T Consensus 532 ~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 532 FGIACLVTLALFISIQLLL 550 (618)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 8877666666655554444
No 266
>PRK06265 cobalt transport protein CbiM; Validated
Probab=55.69 E-value=1.5e+02 Score=26.45 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchH--HHHHHHH
Q 015223 253 PYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIF--SITPQFL 330 (411)
Q Consensus 253 n~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~--~li~~~~ 330 (411)
|.+...+-.++...+.++..||. +..++..+++-..++....+.....-...+. ..+.... -+.+.++
T Consensus 103 N~l~m~~p~~~~~~~~~~~~~~~--------~~~~~~~~f~~~~l~v~~~~l~~~~~l~l~~--~~~~~~~~~~~~~~~~ 172 (199)
T PRK06265 103 NTLNMALPAVLAGYLFRKLLRRT--------PPPRGLAAFLAGALAVFLAALLCALELALSG--GFPFVPAAKLLGLAHL 172 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHH
Confidence 44444444555565555554432 1234455666666665555544322211111 1011111 1335557
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhH
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKGM 355 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~~ 355 (411)
.+++.|.++.-...++..+.-|+-.
T Consensus 173 ~l~~~Eg~ltg~~v~~l~~~rP~~l 197 (199)
T PRK06265 173 PLMVIEGIITAFAVSFLARVRPELL 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhc
Confidence 7777799999666678888877643
No 267
>PRK08319 cobalt transport protein CbiM; Validated
Probab=53.58 E-value=1.7e+02 Score=26.81 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHH
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQ 356 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~ 356 (411)
.+.++.++++|.++.-...++..+.-|+-.+
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~ 213 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLV 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHh
Confidence 4566789999999996666888888887664
No 268
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=52.97 E-value=14 Score=37.73 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=51.9
Q ss_pred hhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc-----cccchhHHHHHHHHHHHHHHHHhh
Q 015223 40 HGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT-----HSGMDVGFGVSAAAMALGLFGVVS 107 (411)
Q Consensus 40 ~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~-----~~g~~~~F~i~~~~~~l~~i~~~~ 107 (411)
.-++.||.+ -|+.+.++--.+.-.|+.+|...-.++++ ..+.+..|.+.+.+++++.++.++
T Consensus 430 vpaE~FPar------vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 430 VPAEIFPAR------VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred eehhhchHH------HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 335666532 28999999999999999999999999999 789999999999998888776654
No 269
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=51.11 E-value=1.4e+02 Score=30.29 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 015223 290 FGLFLATFSMISAALMEKK 308 (411)
Q Consensus 290 ~G~~l~~l~~~~~~~~~~~ 308 (411)
.|+++.++.|+...++|..
T Consensus 300 YgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555543
No 270
>PRK11715 inner membrane protein; Provisional
Probab=50.24 E-value=1.3e+02 Score=30.56 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhcccCCCccchH-H------HHHHH-HHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHH
Q 015223 290 FGLFLATFSMISAALMEKKRRDSALDSGKTLSIF-S------ITPQF-LIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 361 (411)
Q Consensus 290 ~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~-~------li~~~-~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g 361 (411)
.|++++++.|+...+.|...+. ++++. + ++..| .|++++|=+-+-..| +++..+.-.+.+.|.+
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~-------~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AY-liAa~a~v~li~~Y~~ 377 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKL-------RIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAY-LIAALACVLLIGFYLS 377 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-------eecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH-HHHHHHHHHHHHHHHH
Confidence 5777778888888887754321 22221 1 22222 345555555554444 4566666666666655
Q ss_pred HHHHHHhHHHHHHhHhhhhh
Q 015223 362 MTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 362 ~~~l~~~~G~~lg~~l~~~~ 381 (411)
...=..--|..++..+..++
T Consensus 378 ~vl~~~k~g~~~~~~L~~LY 397 (436)
T PRK11715 378 AVLRSWKRGLLFAAALAALY 397 (436)
T ss_pred HHHhcchHHHHHHHHHHHHH
Confidence 55544444444444444443
No 271
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=48.88 E-value=28 Score=33.07 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=60.6
Q ss_pred ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhH
Q 015223 11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVG 90 (411)
Q Consensus 11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~ 90 (411)
|+-.++...+++..++-.+.|.+.|.++-+-.+..|++. |...+++|..-.|+=.-++...---=....+-+.-
T Consensus 339 P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~m 412 (454)
T KOG4332|consen 339 PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNM 412 (454)
T ss_pred CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchh
Confidence 334556666888888999999999999877766655433 78999999999887555442110000011344678
Q ss_pred HHHHHHHHHHHHHHH
Q 015223 91 FGVSAAAMALGLFGV 105 (411)
Q Consensus 91 F~i~~~~~~l~~i~~ 105 (411)
|.+|.+.++++.+.-
T Consensus 413 f~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 413 FGICSAFLFVASILQ 427 (454)
T ss_pred hhhhHHHHHHHHHHH
Confidence 999998888775543
No 272
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=46.89 E-value=75 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHHHHHHhhcccce
Q 015223 58 SYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 112 (411)
Q Consensus 58 ~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~~i~~~~~~~~~ 112 (411)
.+-.++...+-+++++|.+. ||+.++ .+..+++-+++.++++++.+=-+..|
T Consensus 8 ~ae~l~~~il~~~~iisfi~-Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y 59 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISFIV-GYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhh
Confidence 35566667777778777554 566653 56777777777777766665444444
No 273
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=46.52 E-value=90 Score=31.84 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=56.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchH--HHHHHHHHHHHHHHHHh-hHHHHHHHHHhhhhHHHHHHHHHH
Q 015223 288 IGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIF--SITPQFLIFGLSEMFTA-VGLIEFFYKQSLKGMQAFLTAMTY 364 (411)
Q Consensus 288 ~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~--~li~~~~l~~ige~l~~-~~~~~~~~~~aP~~~~g~~~g~~~ 364 (411)
..+|.++..+|..+=.+... .-.+...+ ....+..+-+.+|.++. .+. -....--|++.|+.+..+-.
T Consensus 112 ~llgt~ln~iGa~Ir~iss~--------p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs-kiA~~WF~~~qra~A~~~~v 182 (480)
T KOG2563|consen 112 LLLGTVLNGIGAWIRLISSL--------PFVPPLFRRPLTHTGQSIAAAAQPFILGLPS-KIAAVWFPPDQRAIATVLGV 182 (480)
T ss_pred HHHHHHHHHHHHHHhhhccC--------ccccccchhhhhHHhHHHHHHhhhHhhcccc-HHHHhhCCcchhhhhhhHHH
Confidence 46777888777766554321 00012222 34566688899999997 333 56777899999999988766
Q ss_pred HHHhHHHHHHhHhhhhhccc
Q 015223 365 CSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 365 l~~~~G~~lg~~l~~~~~~~ 384 (411)
+...+|-.+|.++-..+...
T Consensus 183 ~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 183 MGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hcchHHHHHHhhccceecCC
Confidence 66666666666555555443
No 274
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=46.24 E-value=70 Score=33.05 Aligned_cols=71 Identities=8% Similarity=0.029 Sum_probs=52.1
Q ss_pred HHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH-HHHHHHHH
Q 015223 26 VAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV-SAAAMALG 101 (411)
Q Consensus 26 ~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i-~~~~~~l~ 101 (411)
-++..-++...-.+.+.++|++.++ +..+++-+....++-..+-.++++.+.++.||..+-.+ |.+....+
T Consensus 292 Ygi~inLvE~~wK~~lk~~~~~~~~-----ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 292 YGISINLVEVVWKSQLKQLYPDPND-----YSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 4445556666667778888886542 68899999999999888888899999999999875555 34443333
No 275
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.17 E-value=1.1e+02 Score=31.45 Aligned_cols=67 Identities=6% Similarity=0.063 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccccc
Q 015223 320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKVTS 386 (411)
Q Consensus 320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~s~ 386 (411)
.+-+.....-.++|+|-.+.+.+.-.+.++..+++-+.+..++.+.....+..+|+.+.-.+...+.
T Consensus 100 ~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~ 166 (461)
T KOG3098|consen 100 PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSS 166 (461)
T ss_pred cchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecc
Confidence 3455666677999999999998888899999999999999999999999999999988888877663
No 276
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=41.82 E-value=68 Score=32.60 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=46.6
Q ss_pred CCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHH
Q 015223 282 ISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTA 361 (411)
Q Consensus 282 ~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g 361 (411)
++...|+..++++..+.+++...+.. .+ .......+..+..-++.+++..+...+...++. .-|++ +++
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~--~~----~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~ 140 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVK--VQ----TSETGFFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSS 140 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheee--ec----CCcchHHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHH
Confidence 35566788886655555544444221 01 010123334445557788888888877766554 55543 344
Q ss_pred HHHHHHhHHHHHHhHhh
Q 015223 362 MTYCSYSFGFYLSSLLV 378 (411)
Q Consensus 362 ~~~l~~~~G~~lg~~l~ 378 (411)
.+...+++++.++..+-
T Consensus 141 a~~~G~g~aGv~~s~~~ 157 (437)
T TIGR00939 141 AVMSGQGLAGVLTSLAM 157 (437)
T ss_pred HHHhcchhHHHHHHHHH
Confidence 45555666666655443
No 277
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=41.46 E-value=59 Score=27.95 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHh
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLV 79 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g 79 (411)
+...++.+=++.++|.+.+.......+.+.-++++ |++..+++....+.+.++|.+..-
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999888886654322 677788888888887777766543
No 278
>PRK03612 spermidine synthase; Provisional
Probab=40.99 E-value=80 Score=32.91 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc-cccch-hHHHHHHHHHH
Q 015223 22 ALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT-HSGMD-VGFGVSAAAMA 99 (411)
Q Consensus 22 ~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~-~~g~~-~~F~i~~~~~~ 99 (411)
..++.++-.|+.-|.+..+..+..++ + .++..+..|....+|+.+|.++.+++-- ..|-. ..+.++.+...
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~~~-~------~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~ 188 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIRDQ-H------LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLL 188 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-c------hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 33445666677666666655433221 1 2456788888888999999998887543 56654 44444444434
Q ss_pred HHHHH
Q 015223 100 LGLFG 104 (411)
Q Consensus 100 l~~i~ 104 (411)
.+++.
T Consensus 189 ~a~~~ 193 (521)
T PRK03612 189 AALVF 193 (521)
T ss_pred HHHHH
Confidence 44333
No 279
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=38.52 E-value=1.6e+02 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccchhHH
Q 015223 59 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGF 91 (411)
Q Consensus 59 ~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F 91 (411)
.++...+.+-+..++|..++-||-++++-...|
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~ 76 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSW 76 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH
Confidence 355666677777777888888888877633333
No 280
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=37.45 E-value=50 Score=33.13 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223 16 ASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQT 83 (411)
Q Consensus 16 ~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~ 83 (411)
.+..++-.+..|+-.|....|....+.+..++++ |+-+.+.-.++-++|.+++.+++-++..
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444555666899999999999999998766533 8999999999999999988888766654
No 281
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=33.85 E-value=3.3e+02 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.118 Sum_probs=14.7
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 015223 320 LSIFSITPQFLIFGLSEMF 338 (411)
Q Consensus 320 ~s~~~li~~~~l~~ige~l 338 (411)
-|..+...+|.+..++..-
T Consensus 102 ~~~~~~~iay~vf~~~~~g 120 (186)
T PF09605_consen 102 KSKKRNTIAYAVFSLGYMG 120 (186)
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 4677788888888887773
No 282
>PF14007 YtpI: YtpI-like protein
Probab=32.15 E-value=1.8e+02 Score=22.48 Aligned_cols=52 Identities=29% Similarity=0.373 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHHHHHHhhcccceeccCC
Q 015223 65 FAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYYRNKRP 117 (411)
Q Consensus 65 ~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p 117 (411)
+.+-+|.++.....-.+.. ..=...+.++++..++++...+.+.|.+++..|
T Consensus 35 a~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 4455566554443322222 222567778889999999999999998877554
No 283
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=32.05 E-value=5.6e+02 Score=26.03 Aligned_cols=62 Identities=8% Similarity=0.039 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 320 LSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 320 ~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
.+...++...++-=+|--.........+.+.+|++.||...|+-...+++-..+.-.++-.+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555555555555655555566666788889999999999998888888777766555444
No 284
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=31.56 E-value=5.7e+02 Score=25.96 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHH-HHHhHhhhhhcccc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGF-YLSSLLVSFVNKVT 385 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~-~lg~~l~~~~~~~s 385 (411)
+|.+.+.---...++.+++.++.+||+..|++|.+.+...++|+ ..+.+...+.+..+
T Consensus 375 ~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 375 SYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 34444444334458888999999999999999999887766654 45555555555554
No 285
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=29.12 E-value=2.5e+02 Score=26.10 Aligned_cols=71 Identities=13% Similarity=-0.038 Sum_probs=48.9
Q ss_pred HhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHHHHHHhh
Q 015223 28 IGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVS 107 (411)
Q Consensus 28 lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~~i~~~~ 107 (411)
-|+.-..+..++-..+.+.= + .+-.+....+.|+|..+| .+.|.+.|+++.+....+.++..+++-.....
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~-s-------q~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGY-S-------QSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred cCcccchhhhhHHHHHHhCC-C-------HHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666655555543 2 223677778899999987 67789999999888888888777777654433
No 286
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=27.84 E-value=4.1e+02 Score=26.98 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=25.9
Q ss_pred eeCCccccchhHHHHHHHHHhhhHhHHhhhh
Q 015223 243 HVPPASLQSIPYIMLVILVPLYDKFFVPFAR 273 (411)
Q Consensus 243 ~i~~~~l~~in~l~ill~~p~~~~l~~~~~~ 273 (411)
.+|++.++....+..+++.|..++++++..|
T Consensus 37 Ll~~siygl~~~~~~~~f~~~vG~~iD~~~R 67 (432)
T PF06963_consen 37 LLPVSIYGLVRSLSAILFGPWVGRWIDRSPR 67 (432)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc
Confidence 4677778888889999999999999986654
No 287
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.45 E-value=1.8e+02 Score=22.58 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHHHHHHHHHHhhcccce
Q 015223 59 YFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAAMALGLFGVVSGTLYY 112 (411)
Q Consensus 59 ~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~~~l~~i~~~~~~~~~ 112 (411)
+=.++...+.+|+.+|.+.+-+ ++.++|.. | +-++..++..++.+=-+.+|
T Consensus 24 aEr~~q~ilti~aiVg~i~Gf~-~Qqls~tv-y-~vg~~~v~t~li~LPpwP~y 74 (101)
T KOG4112|consen 24 AERFQQLILTIGAIVGFIYGFA-QQQLSVTV-Y-IVGAGFVFTLLITLPPWPWY 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-H-HHHHHHHHHHHhcCCCchhh
Confidence 4455677888999999877754 44467543 3 22333344444444334444
No 288
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=27.00 E-value=7.3e+02 Score=25.77 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHhhhhc
Q 015223 56 LSSYFNAAYFAFSTGELVALTVLVWVQT 83 (411)
Q Consensus 56 r~~~f~~~y~~iNlG~~ig~~l~g~l~~ 83 (411)
-+|++..++...|++.+++..+..++.+
T Consensus 182 akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 182 AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999998866
No 289
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.90 E-value=2.3e+02 Score=19.85 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhHHhhhhccccchhHHHHHHHH
Q 015223 62 AAYFAFSTGELVALTVLVWVQTHSGMDVGFGVSAAA 97 (411)
Q Consensus 62 ~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~~~ 97 (411)
-+-|+..+|..+|.+.+..-+..+++...-.++.+.
T Consensus 6 t~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~ 41 (57)
T PF11151_consen 6 TFFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIF 41 (57)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 355899999999988887777666666555544433
No 290
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=26.84 E-value=1.2e+02 Score=31.39 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=61.4
Q ss_pred ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhh------hhcc
Q 015223 11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVW------VQTH 84 (411)
Q Consensus 11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~------l~~~ 84 (411)
+...+.+....+.+++++|.=++-|.-.+++++.-|+. ..+..++.+......|..++..+++. ..+.
T Consensus 389 ~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~------~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~ 462 (498)
T COG3104 389 SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA------LKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTA 462 (498)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhhceecccccccchhhhh
Confidence 44567888999999999999999999999999988752 25778888888888888888777773 2223
Q ss_pred ccchhHHHHHHHH
Q 015223 85 SGMDVGFGVSAAA 97 (411)
Q Consensus 85 ~g~~~~F~i~~~~ 97 (411)
......|...+..
T Consensus 463 ~~~~~~F~~~g~v 475 (498)
T COG3104 463 FIEGRVFGTIGVV 475 (498)
T ss_pred hhhhhhHHHHHHH
Confidence 4445666666543
No 291
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=25.54 E-value=6.1e+02 Score=24.41 Aligned_cols=38 Identities=5% Similarity=-0.015 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHH
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMT 363 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~ 363 (411)
.+++.+.-..-.+..|..+-+-.+..|++.|+..|-.+
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence 55667777777888899888889999999998877654
No 292
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=25.41 E-value=1.6e+02 Score=29.85 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 321 SIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 321 s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+-+|.+.-.+++|+..+......+-+.-+.++++.|-.+..+..+...+|-.+|+.++-.+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556799999999998666678888899999999999999999999999988876554
No 293
>COG0310 CbiM ABC-type Co2+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=24.91 E-value=3.2e+02 Score=24.67 Aligned_cols=35 Identities=9% Similarity=0.207 Sum_probs=27.9
Q ss_pred chHH-HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH
Q 015223 321 SIFS-ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM 355 (411)
Q Consensus 321 s~~~-li~~~~l~~ige~l~~~~~~~~~~~~aP~~~ 355 (411)
...+ +.+.++.+++.|..+......++.|.-|+-+
T Consensus 167 ~~~~~~~~~~i~~~i~Eg~it~~v~~~l~k~~pd~~ 202 (204)
T COG0310 167 KFPAMLAVHQIPLAIAEGIITAGVVSYLAKMRPDLL 202 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhh
Confidence 3434 5567799999999999888899999888754
No 294
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=23.72 E-value=2.8e+02 Score=27.99 Aligned_cols=113 Identities=11% Similarity=0.191 Sum_probs=65.9
Q ss_pred HHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHHHHHH
Q 015223 255 IMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFLIFGL 334 (411)
Q Consensus 255 l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~i 334 (411)
-.=++.+|+++.+..|...|+ ++.=.+.+..+|.++..++...--.+ .+++...+.-.+...++++-+
T Consensus 78 sLKllWaPiVDs~y~k~~Grr----ksWvvp~q~llG~~mllLs~~v~~~~--------g~ng~~p~v~~lt~~f~LLnf 145 (510)
T KOG3574|consen 78 SLKLLWAPIVDSVYSKRFGRR----KSWVVPCQYLLGLFMLLLSYLVDRGL--------GGNGGLPNVVALTLLFLLLNF 145 (510)
T ss_pred HHHHHHHhhhHHHHHHhhccc----cceeeehHHHHHHHHHHHhhCCCccc--------ccCCCCcchHHHHHHHHHHHH
Confidence 445788999997765433332 22345566777777655443321111 111211222223334455555
Q ss_pred HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhh
Q 015223 335 SEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVS 379 (411)
Q Consensus 335 ge~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~ 379 (411)
.-.---++....+.....++.-|.+.......+..|.++|..+.-
T Consensus 146 laAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 146 LAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 555556888888888888888888887777777777777655443
No 295
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=22.68 E-value=83 Score=32.18 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=56.6
Q ss_pred ccCchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh
Q 015223 11 AKGFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ 82 (411)
Q Consensus 11 ~~~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~ 82 (411)
.+.....++.++..+.=+.+-..+.-.-++.+|...+++.+ .++.+++-..+.+|..+|..+++|+.
T Consensus 137 ~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~-----~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 137 VKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK-----TRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred cchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh-----hccchhHHHHHHhcceeeeecccccC
Confidence 34567889999999999999999999999999999875532 22899999999999999999998764
No 296
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=21.81 E-value=2.8e+02 Score=19.11 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhHHhhhhccccchhHH
Q 015223 64 YFAFSTGELVALTVLVWVQTHSGMDVGF 91 (411)
Q Consensus 64 y~~iNlG~~ig~~l~g~l~~~~g~~~~F 91 (411)
..+.-+...+|-.++-++.+..|+....
T Consensus 4 W~a~ilt~~lGt~~~D~l~~~lglg~~~ 31 (55)
T PF03988_consen 4 WIAKILTTTLGTTAGDFLSKTLGLGYLI 31 (55)
T ss_pred HHHHHHHHHhHHHHHHHHHhccCccHHH
Confidence 3444556667777888888766654433
Done!