Query 015223
Match_columns 411
No_of_seqs 115 out of 1230
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.8 1.2E-19 4E-24 185.4 10.8 351 15-383 108-466 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 7.3E-18 2.5E-22 170.5 22.1 323 14-383 106-447 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.4 2.5E-12 8.7E-17 127.7 17.9 286 14-383 117-408 (451)
4 2gfp_A EMRD, multidrug resista 99.3 5E-12 1.7E-16 122.9 11.4 260 15-382 87-350 (375)
5 3o7q_A L-fucose-proton symport 99.3 2.6E-10 9E-15 112.7 23.4 266 13-384 114-407 (438)
6 4gc0_A D-xylose-proton symport 98.7 1.3E-06 4.5E-11 87.4 19.7 79 13-97 123-209 (491)
7 2cfq_A Lactose permease; trans 98.6 2.6E-08 8.8E-13 98.6 4.6 110 248-382 263-373 (417)
8 3o7q_A L-fucose-proton symport 98.2 1.4E-05 4.9E-10 78.4 13.8 114 247-382 64-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.1 2.2E-05 7.5E-10 77.3 13.9 115 246-381 64-178 (451)
10 2gfp_A EMRD, multidrug resista 97.9 8.6E-05 2.9E-09 71.4 11.6 111 247-382 38-148 (375)
11 4aps_A DI-OR tripeptide H+ sym 97.8 0.00041 1.4E-08 69.2 15.1 113 246-383 56-171 (491)
12 2xut_A Proton/peptide symporte 97.6 0.00034 1.2E-08 70.5 11.7 111 247-381 57-171 (524)
13 4gc0_A D-xylose-proton symport 97.3 0.0015 5E-08 65.1 12.3 125 249-384 60-188 (491)
14 2cfq_A Lactose permease; trans 96.4 0.0013 4.4E-08 64.5 2.8 85 17-107 313-398 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.79 E-value=1.2e-19 Score=185.40 Aligned_cols=351 Identities=20% Similarity=0.286 Sum_probs=208.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++++.++|.|...|...+++.|.+++++. .++...+++++.+.++|..+||.+++++.++.||++.|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 567888999999999999999999999999987541 11366788899999999999999999999989999999999
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..+++.+.++..++...+.+|++++..+..+.+....+++....+ ............ .......+.+....+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 261 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGV--SAAYALVNIPTLGIVAGL 261 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHH--HHHHTGGGTTTTCSSHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhh--hhhhhhcccchhhhhhhh
Confidence 88877776666554444433233333222222222222111100000 000000000000 000000000000000000
Q ss_pred hhhhccC-CCCCCCCc-------ccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCeeeCC
Q 015223 175 CIKVEDG-TNKKESPW-------RLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFHVPP 246 (411)
Q Consensus 175 ~~~~~~~-~~~~~~~~-------~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~i~~ 246 (411)
....... ......+| +.++.++.+++++.+...+++.....++..+.|..+.+.++..+++.. .+ .+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~ 337 (524)
T 2xut_A 262 CCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEP 337 (524)
T ss_dssp HHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCH
T ss_pred hhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecH
Confidence 0000000 00000001 001111223455555566666666777777777766666665544332 11 356
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+.+..++++..++..|+.+++..+..+|++++ .++.+++.+|.++.++++++++..+..+. ++...+.+|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 409 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD-----GGSALSIFWQI 409 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-----TTCCCCSHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcCHHHHH
Confidence 77788888888899999998865555554221 35567788899998888887776532110 01135788899
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
+.+++.++++.+..+...+++.+.+|+++||.++|++++..++|+.+|+.+.+.+..
T Consensus 410 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 410 LPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999888999999999999999999999999999999999987754
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.79 E-value=7.3e-18 Score=170.52 Aligned_cols=323 Identities=19% Similarity=0.246 Sum_probs=213.8
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGV 93 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i 93 (411)
.+.+.++++++++++|.|...|...+++.|.+++++.+ |..++++++.+.++|..+||.+++++.++.||++.|++
T Consensus 106 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 106 FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35677889999999999999999999999999975532 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccceec-c--CCCCC-cchhHHHHHH-------------HHHHhhcccCCCCCccccccCCCCCC
Q 015223 94 SAAAMALGLFGVVSGTLYYRN-K--RPQGS-IFTPIAQVFV-------------AAMLKRKQICPSNPQMLHGLNQNNVP 156 (411)
Q Consensus 94 ~~~~~~l~~i~~~~~~~~~~~-~--~p~~~-~~~~~~~v~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (411)
.++..+++++.++..+++..+ + +|+.. ...+..+... ...... . .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~--~---~------------- 243 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV--G---W------------- 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH--S---S-------------
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc--c---C-------------
Confidence 988777777666544443321 1 12111 1111111000 000000 0 0
Q ss_pred CCCCccccccchh-hhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHh-h
Q 015223 157 NDSGSVFLTQRFR-FLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSA-M 234 (411)
Q Consensus 157 ~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~-~ 234 (411)
...++..... .......... ....++... .+..++++.....++++....++..+.+..+.+.....+ .
T Consensus 244 ---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
T 4aps_A 244 ---NSLPAYINLLTIVAIAIPVFY-----FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERV 314 (491)
T ss_dssp ---CCTTHHHHHHHHHHHHHHHHH-----HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSC
T ss_pred ---cccccchhhhhHHHHHHHHHH-----HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 0000000000 0000000000 000011001 112345566666777777888888888876654333321 1
Q ss_pred cccCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcc
Q 015223 235 NNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSAL 314 (411)
Q Consensus 235 ~~~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~ 314 (411)
+. + ..+.+.+..++.+..++..++.+++.+++.+|. .....++..|.++.+++++++........ +
T Consensus 315 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 380 (491)
T 4aps_A 315 DS----S-WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALYG---T 380 (491)
T ss_dssp CC----S-SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHCC---C
T ss_pred cc----C-ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 11 1 145778889999999999999999888776653 35567788999999999988887653211 0
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 315 DSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 315 ~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
..+.+.+|+++.+++.++|+.+..+..++++.+..|++.||.++|+++....+|+.+++.+.+.+..
T Consensus 381 --~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 381 --SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp --CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1136788899999999999999998888999999999999999999999999999999999887754
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=2.5e-12 Score=127.73 Aligned_cols=286 Identities=9% Similarity=-0.058 Sum_probs=165.9
Q ss_pred chHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcccc-chhHHH
Q 015223 14 FKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSG-MDVGFG 92 (411)
Q Consensus 14 ~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g-~~~~F~ 92 (411)
.+.+.+++++++.++|.|...|...+++.|.+++++ |+++++++..+.++|.++||.+++++.+..| |++.|+
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~ 190 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 190 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 345678889999999999999999999999998643 8999999999999999999999999888898 999999
Q ss_pred HHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhh
Q 015223 93 VSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLD 172 (411)
Q Consensus 93 i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (411)
+.++..++..+......++ .|+..... ...+... ..+.+. .....+...+-+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~---------------~~~~~~~-~~~~~~--------~~~~~~~~~~~~ 242 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRD----TPQSCGLP---------------PIEEYKN-DYPDDY--------NEKAEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCC----SSTTTCCC---------------SCTTTCC-C---------------------CCTH
T ss_pred HHHHHHHHHHHHHHhhccC----CHhhcCCC---------------Chhhhcc-cccccc--------hhhhhccccccc
Confidence 9887665554443332221 11110000 0000000 000000 000000000000
Q ss_pred hhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccCCCCee-eCCccccc
Q 015223 173 KACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQLQTFSVQQGSAMNNKLTKNFH-VPPASLQS 251 (411)
Q Consensus 173 ~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~~s~~~~~~~~~~~~~g~g~~-i~~~~l~~ 251 (411)
.. ++ +-..++ .+. .+.+.....+..+....+.+... +....+ .. ...+.+..
T Consensus 243 ~~--------------~~----~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g--~~~~~~~~~~~ 295 (451)
T 1pw4_A 243 IF--------------MQ----YVLPNK-LLW---YIAIANVFVYLLRYGILDWSPTY---LKEVKH--FALDKSSWAYF 295 (451)
T ss_dssp HH--------------HH----HTSSCH-HHH---HHHHHHHHHHHHHHHHHHHHHHH---BTTBSC--CCHHHHHHHHH
T ss_pred ch--------------HH----HHHcCH-HHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHhcC--CCHHHHHHHHH
Confidence 00 00 000111 111 12222222222222221111111 111122 11 11234556
Q ss_pred hhHHHHHHHHHhhhHhHHhh--hhhccCCCCCCCchhHHHHhHHHHH-HHHHHHHHHHHHhhhhcccCCCccchHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPF--ARKYTGHESGISPLQRIGFGLFLAT-FSMISAALMEKKRRDSALDSGKTLSIFSITPQ 328 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~--~~~~~~~~~~~s~~~k~~~G~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~ 328 (411)
...+..++..++.+++.+++ .+| +.+.++.++.+ ++++++.... ..+.++....
T Consensus 296 ~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 352 (451)
T 1pw4_A 296 LYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVTIATIVYWMNP------------AGNPTVDMIC 352 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHHHHHHHTTSCC------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHHHHHHHHHHhc------------ccCHHHHHHH
Confidence 66666777777777776554 222 22344444443 4544443221 1356666777
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhH-HHHHHhHhhhhhcc
Q 015223 329 FLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSF-GFYLSSLLVSFVNK 383 (411)
Q Consensus 329 ~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~-G~~lg~~l~~~~~~ 383 (411)
.++.+++.....+....++.+..|++.||.++|+.+....+ |..+++.+.+.+..
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~ 408 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 408 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888777777778999999999999999999999999 99999999887644
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.33 E-value=5e-12 Score=122.93 Aligned_cols=260 Identities=8% Similarity=-0.024 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhccccchhHHHHH
Q 015223 15 KASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTHSGMDVGFGVS 94 (411)
Q Consensus 15 ~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~ 94 (411)
+.+.+++++.+.+++.+...|...+++.|.+++++ |.++++++....++|..++|.+++++.++++|++.|++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 56788899999999999999999999999998654 789999999999999999999999999989999999987
Q ss_pred HHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCccccccCCCCCCCCCCccccccchhhhhhh
Q 015223 95 AAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQMLHGLNQNNVPNDSGSVFLTQRFRFLDKA 174 (411)
Q Consensus 95 ~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 174 (411)
++..++..+.... ..++.+++.++ ++. .
T Consensus 161 ~~~~~~~~~~~~~---~~~~~~~~~~~--------------------~~~-----------------~------------ 188 (375)
T 2gfp_A 161 LVLCAGVTFSMAR---WMPETRPVDAP--------------------RTR-----------------L------------ 188 (375)
T ss_dssp HHHHHHHHCCCCC---SSCCCSTTTCC--------------------CCC-----------------T------------
T ss_pred HHHHHHHHHHHHH---HCcccCCCCcc--------------------ccc-----------------H------------
Confidence 7654443332221 22211111000 000 0
Q ss_pred hhhhccCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhhcccCCCCeeeCCccccc
Q 015223 175 CIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVPIFACTIIFNTILAQL---QTFSVQQGSAMNNKLTKNFHVPPASLQS 251 (411)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~l~~~~~~~~~~~~q~---~s~~~~~~~~~~~~~g~g~~i~~~~l~~ 251 (411)
. ..++ +-.+++ ++.... +.....+..+... .+.+.++..+.+.. ..+.+..
T Consensus 189 ----------~-~~~~----~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------~~g~~~~ 242 (375)
T 2gfp_A 189 ----------L-TSYK----TLFGNS-GFNCYL---LMLIGGLAGIAAFEACSGVLMGAVLGLSSM-------TVSILFI 242 (375)
T ss_dssp ----------T-TCST----HHHHHH-HHHHHH---HHHHHHHHHHHHHHHHCSCSSHHHHHHHHH-------HHHHHHH
T ss_pred ----------H-HHHH----HHhcCc-chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-------HHHHHHH
Confidence 0 0000 001222 222211 1111112111111 11222221222211 1233445
Q ss_pred hhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHH-HHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 015223 252 IPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFL-ATFSMISAALMEKKRRDSALDSGKTLSIFSITPQFL 330 (411)
Q Consensus 252 in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~ 330 (411)
...+..++..++.+++. +|. +. ++..+..+ ...+......... . ..+.+.++...+
T Consensus 243 ~~~~~~~~~~~~~~~l~----~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~ 299 (375)
T 2gfp_A 243 LPIPAAFFGAWFAGRPN----KRF-------ST--LMWQSVICCLLAGLLMWIPDWF------G----VMNVWTLLVPAA 299 (375)
T ss_dssp THHHHHHHHHHHHHTTT----THH-------HH--HHHHHHHHHHHTSSSSSHHHHH------H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHH-------HH--HHHHHHHHHHHHHHHHHHHhhh------c----cccHHHHHHHHH
Confidence 55566666666665544 222 11 34445544 3333322121110 0 124555667788
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 331 IFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 331 l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
+.+++.....+....++.+..| +.||.++|+.+....+|..+++.+.+.+.
T Consensus 300 l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 300 LFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988888899999999 89999999999999999999998887764
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.32 E-value=2.6e-10 Score=112.73 Aligned_cols=266 Identities=12% Similarity=0.020 Sum_probs=158.6
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhh-cccc-----
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQ-THSG----- 86 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~-~~~g----- 86 (411)
..+.+.+++++++.++|.|...|...+++.|.+++++ |.++++++....++|..+++.+++++. +..+
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3567889999999999999999999999999998755 789999999999999999999999988 5554
Q ss_pred --------------------chhHHHHHHHHHHHHHHHHhhcccceeccCCCCCcchhHHHHHHHHHHhhcccCCCCCcc
Q 015223 87 --------------------MDVGFGVSAAAMALGLFGVVSGTLYYRNKRPQGSIFTPIAQVFVAAMLKRKQICPSNPQM 146 (411)
Q Consensus 87 --------------------~~~~F~i~~~~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (411)
|++.|++.++..++..+.++.. +. |+.++.. +.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~----p~~~~~~-----------------~~~~-- 242 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--KF----PALQSDN-----------------HSDA-- 242 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC----CCCTTTC-----------------CCCS--
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--cC----Ccccccc-----------------cccc--
Confidence 8999977665544444433331 11 1110000 0000
Q ss_pred ccccCCCCCCCCCCccccccchhhhhhhhhhhccCCCCCCCCcccccchhHHHHHHHHhHHH-HHHHHHHHHHHHhhhhH
Q 015223 147 LHGLNQNNVPNDSGSVFLTQRFRFLDKACIKVEDGTNKKESPWRLCTVTQVEQVKVLISVVP-IFACTIIFNTILAQLQT 225 (411)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-l~~~~~~~~~~~~q~~s 225 (411)
........+.+ +. +++ .+...+. .+.....+....... +
T Consensus 243 ---------------~~~~~~~~~~~------------------~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 282 (438)
T 3o7q_A 243 ---------------KQGSFSASLSR------------------LA-----RIR-HWRWAVLAQFCYVGAQTACWSYL-I 282 (438)
T ss_dssp ---------------STTSHHHHHHH------------------HT-----TCS-HHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---------------cccchhhhHHH------------------HH-----hCh-HHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 00000000000 00 011 1111111 111111111111111 2
Q ss_pred HH-HHHHHhhcccCCCCeeeCCccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHH
Q 015223 226 FS-VQQGSAMNNKLTKNFHVPPASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAAL 304 (411)
Q Consensus 226 ~~-~~~~~~~~~~~g~g~~i~~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~ 304 (411)
.| .++..+++. ...+.+..+..+..++..++.+++.+++.+| +-+..+.++.+++++....
T Consensus 283 ~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 283 RYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----------KVLAAYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHH
Confidence 33 222111110 1123445555566677777777777655433 2345666666666655544
Q ss_pred HHHHhhhhcccCCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 305 MEKKRRDSALDSGKTLSIFSITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~s~~~li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
.. +. +.+...++.+++.....+...++..+..|++ ++.++++.. ...+|+.+++.+.+.+...
T Consensus 345 ~~--------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 345 AG--------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp CC--------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred cC--------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 21 22 3344557888888888888888888999988 889988877 6679999999988876553
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.66 E-value=1.3e-06 Score=87.43 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=65.2
Q ss_pred CchHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhHHhhhhcc--------
Q 015223 13 GFKASIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNAAYFAFSTGELVALTVLVWVQTH-------- 84 (411)
Q Consensus 13 ~~~~~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~~y~~iNlG~~ig~~l~g~l~~~-------- 84 (411)
..+.+.++++|+++++|.|+..+...++++|..|++. |++..+++..+..+|.++++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 4567889999999999999999999999999998644 89999999999999999999888766543
Q ss_pred ccchhHHHHHHHH
Q 015223 85 SGMDVGFGVSAAA 97 (411)
Q Consensus 85 ~g~~~~F~i~~~~ 97 (411)
..|++.+.+..+.
T Consensus 197 ~~~~~~~~~~~~~ 209 (491)
T 4gc0_A 197 DGWRYMFASECIP 209 (491)
T ss_dssp THHHHHHHTTHHH
T ss_pred hhhHHHhhhhhhh
Confidence 3466666655544
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.58 E-value=2.6e-08 Score=98.57 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=76.3
Q ss_pred cccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHHH
Q 015223 248 SLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSITP 327 (411)
Q Consensus 248 ~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li~ 327 (411)
.+..++.+..++..++.+++.+++.+|+ .+..+.++.+++++..+.. .+.++++.
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 317 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGSSFA--------------TSALEVVI 317 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHHTTC--------------CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHHHHHHHh--------------ccHHHHHH
Confidence 3455666666667777788776665442 2455666666665444321 24555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH-HHHHHhHHHHHHhHhhhhhc
Q 015223 328 QFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM-TYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 328 ~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~-~~l~~~~G~~lg~~l~~~~~ 382 (411)
..++.+++.....++...++.+..|++.||...|+ ++...++|+.+++.+.+.+.
T Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 66677777766666667899999999999999998 57888899999988887553
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.20 E-value=1.4e-05 Score=78.43 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=95.0
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.+...+...+..|+.+++.+++++|+ -+.+|.++.+++.++...... ..+.++++
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~ 121 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKA-----------GIITGLFLYALGAALFWPAAE-----------IMNYTLFL 121 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHHHH-----------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHhccc-----------cccHHHHH
Confidence 45567777777888999999988777653 267788888888887744321 24688888
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.|+|.....+....++.+..|++.|+.++|+.....++|..+++.+++.+.
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999998875
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.15 E-value=2.2e-05 Score=77.29 Aligned_cols=115 Identities=13% Similarity=-0.037 Sum_probs=93.6
Q ss_pred CccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
.+++.++..+...+..|+.+++.+++++|+ -+.+|.++.+++.++.++.... ..+.+++
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----------~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l 122 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSNPRV-----------FLPAGLILAAAVMLFMGFVPWA----------TSSIAVM 122 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHCHHH----------HSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCchH-----------HHHHHHHHHHHHHHHHHhhhhc----------cccHHHH
Confidence 345667777888888999999888776552 3577888888888888773210 0257778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~ 381 (411)
+...++.|++.....+...+++.+..|++.|+.++|++....++|..+|+.+++.+
T Consensus 123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 123 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999889999999999999999999999999999999888764
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.86 E-value=8.6e-05 Score=71.39 Aligned_cols=111 Identities=10% Similarity=0.043 Sum_probs=91.5
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSIT 326 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~li 326 (411)
+++.++..+...+..|+.+++.+++.+|+ -+..+.++.+++.+.....+ +.++++
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~--------------~~~~l~ 92 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRP-----------VILVGMSIFMLATLVAVTTS--------------SLTVLI 92 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCC-----------CCHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHhc--------------cHHHHH
Confidence 45567777788888999999887766542 14578888888888777653 577788
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhc
Q 015223 327 PQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVN 382 (411)
Q Consensus 327 ~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~ 382 (411)
...++.+++.....+....++.+..|++.|+.++|.+.....+|..+++.+++.+.
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88999999999999988899999999999999999999999999999998877654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.76 E-value=0.00041 Score=69.17 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=91.2
Q ss_pred CccccchhHHHHHHHHHhhhHhHHh-hhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHH
Q 015223 246 PASLQSIPYIMLVILVPLYDKFFVP-FARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFS 324 (411)
Q Consensus 246 ~~~l~~in~l~ill~~p~~~~l~~~-~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~ 324 (411)
.+++.++..+...+..|+.+++.++ +++|+ -+..|.++.+++.++.++. .+.++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~--------------~~~~~ 110 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARP-----------AVFWGGVLIMLGHIVLALP--------------FGASA 110 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-----------HHHHHHHHHHHHHHHHHSC--------------CSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHHHHHh--------------hhHHH
Confidence 3456677778888899999999887 56553 2567888888887776642 36777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhH--HHHHHHHHHHHHhHHHHHHhHhhhhhcc
Q 015223 325 ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGM--QAFLTAMTYCSYSFGFYLSSLLVSFVNK 383 (411)
Q Consensus 325 li~~~~l~~ige~l~~~~~~~~~~~~aP~~~--~g~~~g~~~l~~~~G~~lg~~l~~~~~~ 383 (411)
++...+++|+|+....+...+++.+..|++. |+.+++.++...++|..+|+.+++.+..
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 171 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE 171 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999988899999999988 8888888999999999999888876543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.60 E-value=0.00034 Score=70.48 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=85.4
Q ss_pred ccccchhHHHHHHHHHhhhHhHHhh-hhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCCCccchHHH
Q 015223 247 ASLQSIPYIMLVILVPLYDKFFVPF-ARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSGKTLSIFSI 325 (411)
Q Consensus 247 ~~l~~in~l~ill~~p~~~~l~~~~-~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~l 325 (411)
+++.++..+..++..|+.+++.+++ ++| +-+.++.++.+++.++.++. +.+.+++
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 112 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKY-----------NTILWLSLIYCVGHAFLAIF-------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSH-----------HHHHHHHHHHHHHHHHHHHT-------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHHh-------------cccHHHH
Confidence 3455666677778888888888666 443 23567777777777776653 1267778
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH---HHHHHhHHHHHHhHhhhhh
Q 015223 326 TPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAM---TYCSYSFGFYLSSLLVSFV 381 (411)
Q Consensus 326 i~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~---~~l~~~~G~~lg~~l~~~~ 381 (411)
+...++.|+++....+...+++.+..|++.|+..++. ++...++|..+|+.+++.+
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998999999999999877666 8888888888888776654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.33 E-value=0.0015 Score=65.06 Aligned_cols=125 Identities=14% Similarity=0.033 Sum_probs=91.4
Q ss_pred ccchhHHHHHHHHHhhhHhHHhhhhhccCCCCCCCchhHHHHhHHHHHHHHHHHHHHHHHhhhhcccCC----CccchHH
Q 015223 249 LQSIPYIMLVILVPLYDKFFVPFARKYTGHESGISPLQRIGFGLFLATFSMISAALMEKKRRDSALDSG----KTLSIFS 324 (411)
Q Consensus 249 l~~in~l~ill~~p~~~~l~~~~~~~~~~~~~~~s~~~k~~~G~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~s~~~ 324 (411)
+.+...+..++..++.+++-++++||+ -+.++.++..++.+..++............. ...+++.
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~-----------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRD-----------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 344455667788888899888888764 2567777777777776643210000000000 0236777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHhHhhhhhccc
Q 015223 325 ITPQFLIFGLSEMFTAVGLIEFFYKQSLKGMQAFLTAMTYCSYSFGFYLSSLLVSFVNKV 384 (411)
Q Consensus 325 li~~~~l~~ige~l~~~~~~~~~~~~aP~~~~g~~~g~~~l~~~~G~~lg~~l~~~~~~~ 384 (411)
++..-+++|+|+....+....++.+.+|++.|+...+++.....+|..++..+.......
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 889999999999999988889999999999999999999999999999998887766543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.40 E-value=0.0013 Score=64.49 Aligned_cols=85 Identities=8% Similarity=-0.104 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhHHhhhhccccchhHHHHHH
Q 015223 17 SIFFLALYLVAIGSGCVKPNMIAHGADQFDQSNPKQSKKLSSYFNA-AYFAFSTGELVALTVLVWVQTHSGMDVGFGVSA 95 (411)
Q Consensus 17 ~~~~~~l~l~~lG~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~f~~-~y~~iNlG~~ig~~l~g~l~~~~g~~~~F~i~~ 95 (411)
+.+.+...+.+++.+...+...+++.|.+|++. |++++++ +....++|..++|.++|++.++.||+..|.+.+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 344455555666666666777788899887532 7888888 467788999999999999999889999998888
Q ss_pred HHHHHHHHHHhh
Q 015223 96 AAMALGLFGVVS 107 (411)
Q Consensus 96 ~~~~l~~i~~~~ 107 (411)
+..+++.++.+.
T Consensus 387 ~~~l~~~~~~~~ 398 (417)
T 2cfq_A 387 LVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 776767665544
Done!