BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015224
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 72 LKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131
L R L A+Y P N Y IH+DR+A E + A + + +NV++ + V Y
Sbjct: 99 LDRLLRAIYMPQNFYCIHVDRKAEE------SFLAAVQGIASCFDNVFVASQLESVVYAS 152
Query: 132 PTMLATTLHAIAMLLRC-CKWDWFINLSASDYPLVTQDDLI 171
T + L+ + L R W + INLS D+P+ T +++
Sbjct: 153 WTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIV 193
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 72 LKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131
L R L A+Y P N Y IH+DR+A E + A + + +NV++ + V Y
Sbjct: 99 LDRLLRAIYMPQNFYCIHVDRKAEE------SFLAAVQGIASCFDNVFVASQLESVVYAS 152
Query: 132 PTMLATTLHAIAMLLRC-CKWDWFINLSASDYPLVTQDDLI 171
T + L+ + L R W + INL D+P+ T +++
Sbjct: 153 WTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIV 193
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 331 FARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESE 367
F+R ++Q + KI R+L+++ R + NGGW E
Sbjct: 75 FSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDE 111
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 275 SSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPK 310
S P G F T + S DY + TAN D+ IT P K
Sbjct: 48 SGPVGLFDTKVTGSNDYAD-TANSDIVVITAGLPRK 82
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 275 SSPEGYFQTVICNSEDYKNTTANHDLHYITWDTPPK 310
S P G F T + S DY + TAN D+ IT P K
Sbjct: 48 SGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLPRK 82
>pdb|2YFN|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask
pdb|2YFO|A Chain A, Galactosidase Domain Of Alpha-Galactosidase-Sucrose
Kinase, Agask, In Complex With Galactose
Length = 720
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 22 ISTPAKRFTSLYKFNPIIMTSNKITLKSNNSSYPVTFAY---LLSASKGDTIKLKRALLA 78
I+ ++R TS +++NP ++ + K T ++ S Y + F Y ++ D R LL
Sbjct: 215 IAFGSRRGTSSHQYNPAVILAEKGTTETAGSCYGMLFVYSGNFSCEAEKDQFNQTRLLLG 274
Query: 79 L 79
L
Sbjct: 275 L 275
>pdb|1SP3|A Chain A, Crystal Structure Of Octaheme Cytochrome C From Shewanella
Oneidensis
Length = 443
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 190 LGWKMNKRAKPIIIDPGL-----YSLNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAW 244
L K+ A P +++ G+ Y +E+WW I P L D H K W
Sbjct: 364 LAAKLGMEANPTMLEKGIKYSGEYDFAATEMWWRINHMVSPKEQALNCNDCHNKGTRLDW 423
Query: 245 TILS 248
L
Sbjct: 424 QALG 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,679,673
Number of Sequences: 62578
Number of extensions: 538285
Number of successful extensions: 1031
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 8
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)