Query 015224
Match_columns 411
No_of_seqs 234 out of 866
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 5E-114 1E-118 878.6 37.9 397 2-411 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 3.8E-64 8.2E-69 518.3 21.4 331 52-409 98-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 1.4E-52 3.1E-57 400.9 18.3 237 58-325 1-244 (244)
4 TIGR03469 HonB hopene-associat 93.9 4.1 8.8E-05 41.7 17.6 118 52-175 36-159 (384)
5 TIGR03472 HpnI hopanoid biosyn 90.8 7.6 0.00016 39.6 14.9 106 54-175 39-149 (373)
6 PRK11204 N-glycosyltransferase 89.5 6.3 0.00014 40.5 13.2 105 53-174 51-159 (420)
7 TIGR03111 glyc2_xrt_Gpos1 puta 87.3 18 0.0004 37.7 15.0 107 53-175 46-157 (439)
8 cd02525 Succinoglycan_BP_ExoA 85.7 13 0.00027 34.3 11.6 99 57-174 1-103 (249)
9 cd06439 CESA_like_1 CESA_like_ 82.9 29 0.00062 32.3 12.9 106 50-176 23-133 (251)
10 PRK10063 putative glycosyl tra 80.7 34 0.00074 32.8 12.7 101 56-174 1-106 (248)
11 PRK14583 hmsR N-glycosyltransf 80.4 21 0.00046 37.3 12.0 94 54-164 73-169 (444)
12 PRK14716 bacteriophage N4 adso 78.7 30 0.00064 37.3 12.5 101 54-165 64-173 (504)
13 cd06437 CESA_CaSu_A2 Cellulose 78.5 17 0.00036 33.7 9.6 103 56-172 1-107 (232)
14 cd02520 Glucosylceramide_synth 78.4 31 0.00067 31.1 11.1 104 56-175 1-109 (196)
15 PF07521 RMMBL: RNA-metabolisi 78.1 1.2 2.6E-05 31.4 1.2 33 57-91 8-41 (43)
16 PTZ00260 dolichyl-phosphate be 77.7 46 0.00099 33.6 13.0 112 52-175 66-188 (333)
17 cd04184 GT2_RfbC_Mx_like Myxoc 75.9 27 0.00059 31.1 9.9 104 56-174 1-108 (202)
18 cd02511 Beta4Glucosyltransfera 75.4 31 0.00067 32.2 10.5 96 57-175 1-97 (229)
19 PRK07132 DNA polymerase III su 75.4 20 0.00044 35.8 9.6 93 55-159 16-128 (299)
20 PF08660 Alg14: Oligosaccharid 75.3 25 0.00054 32.2 9.4 125 61-188 3-131 (170)
21 PLN02726 dolichyl-phosphate be 72.7 56 0.0012 30.6 11.6 108 52-175 5-116 (243)
22 PF13641 Glyco_tranf_2_3: Glyc 72.6 12 0.00026 34.3 6.8 113 56-185 1-120 (228)
23 cd06421 CESA_CelA_like CESA_Ce 70.4 54 0.0012 29.8 10.7 103 56-175 1-107 (234)
24 COG1216 Predicted glycosyltran 69.5 34 0.00075 33.6 9.7 91 55-161 2-94 (305)
25 PF00535 Glycos_transf_2: Glyc 69.3 22 0.00048 29.8 7.3 100 61-177 3-106 (169)
26 PRK10073 putative glycosyl tra 66.3 71 0.0015 32.0 11.3 93 55-164 5-99 (328)
27 cd04192 GT_2_like_e Subfamily 66.0 58 0.0013 29.4 9.9 99 61-175 2-105 (229)
28 cd04179 DPM_DPG-synthase_like 63.6 76 0.0016 27.6 9.9 107 61-185 2-113 (185)
29 PRK05454 glucosyltransferase M 62.9 2.2E+02 0.0048 32.0 15.2 124 50-185 118-255 (691)
30 cd06427 CESA_like_2 CESA_like_ 62.9 83 0.0018 29.3 10.5 94 56-164 1-98 (241)
31 cd06434 GT2_HAS Hyaluronan syn 62.7 69 0.0015 29.3 9.8 92 58-166 2-93 (235)
32 cd04186 GT_2_like_c Subfamily 60.8 68 0.0015 27.0 8.8 92 61-174 2-96 (166)
33 TIGR01556 rhamnosyltran L-rham 60.0 55 0.0012 31.4 8.9 85 65-164 3-87 (281)
34 cd04187 DPM1_like_bac Bacteria 59.9 1.1E+02 0.0024 26.8 10.3 96 61-175 2-103 (181)
35 PRK07276 DNA polymerase III su 58.9 59 0.0013 32.5 9.0 25 55-79 22-46 (290)
36 TIGR03030 CelA cellulose synth 58.9 1.7E+02 0.0036 32.9 13.5 117 52-184 127-262 (713)
37 PRK05818 DNA polymerase III su 56.7 59 0.0013 32.1 8.4 34 127-160 93-127 (261)
38 cd02510 pp-GalNAc-T pp-GalNAc- 56.6 85 0.0018 30.5 9.7 99 60-174 2-105 (299)
39 PRK05917 DNA polymerase III su 56.0 71 0.0015 31.9 9.0 98 54-160 16-134 (290)
40 cd06913 beta3GnTL1_like Beta 1 55.1 1.1E+02 0.0024 27.8 9.8 104 61-174 2-109 (219)
41 COG3618 Predicted metal-depend 54.1 56 0.0012 32.5 7.7 92 68-169 145-244 (279)
42 cd06420 GT2_Chondriotin_Pol_N 51.8 1.6E+02 0.0035 25.5 10.3 98 61-175 2-102 (182)
43 cd02526 GT2_RfbF_like RfbF is 51.3 1.5E+02 0.0032 27.0 10.0 95 61-173 2-96 (237)
44 PRK06581 DNA polymerase III su 48.6 1.5E+02 0.0033 29.2 9.7 98 54-160 12-128 (263)
45 cd06423 CESA_like CESA_like is 46.9 1.6E+02 0.0036 24.3 9.2 96 61-173 2-99 (180)
46 cd04195 GT2_AmsE_like GT2_AmsE 46.8 2.1E+02 0.0045 25.3 10.4 90 60-165 2-95 (201)
47 PRK11234 nfrB bacteriophage N4 46.7 1.3E+02 0.0028 34.0 10.2 104 52-166 59-171 (727)
48 PF02572 CobA_CobO_BtuR: ATP:c 46.3 1.1E+02 0.0025 28.1 8.1 106 69-184 18-133 (172)
49 PRK07414 cob(I)yrinic acid a,c 46.0 2.5E+02 0.0054 26.1 11.3 106 69-184 36-152 (178)
50 PRK08058 DNA polymerase III su 44.5 1.8E+02 0.0039 29.2 10.1 97 54-159 25-148 (329)
51 COG1215 Glycosyltransferases, 44.4 3.3E+02 0.0072 27.6 12.2 105 55-174 53-162 (439)
52 PRK05986 cob(I)alamin adenolsy 44.1 2.8E+02 0.006 26.0 11.5 106 69-184 37-152 (191)
53 cd04196 GT_2_like_d Subfamily 43.8 2.3E+02 0.005 25.0 11.6 99 60-175 2-102 (214)
54 cd04185 GT_2_like_b Subfamily 43.6 2.3E+02 0.0051 25.1 10.4 90 61-164 2-93 (202)
55 cd06442 DPM1_like DPM1_like re 43.6 1.9E+02 0.0041 26.0 9.4 97 61-175 2-101 (224)
56 cd06433 GT_2_WfgS_like WfgS an 43.4 2.2E+02 0.0047 24.6 9.6 87 60-165 2-90 (202)
57 cd02522 GT_2_like_a GT_2_like_ 42.3 1.8E+02 0.004 26.0 9.0 91 59-174 2-94 (221)
58 PRK07993 DNA polymerase III su 41.8 1.8E+02 0.0038 29.6 9.5 98 54-160 21-147 (334)
59 PF07747 MTH865: MTH865-like f 41.2 14 0.00031 29.5 1.1 17 158-174 12-28 (75)
60 PRK05564 DNA polymerase III su 35.1 3.2E+02 0.007 26.9 10.1 98 54-159 23-131 (313)
61 PRK05707 DNA polymerase III su 35.0 3.6E+02 0.0077 27.3 10.4 100 54-161 19-146 (328)
62 TIGR02803 ExbD_1 TonB system t 34.6 2.8E+02 0.0061 23.4 10.8 49 69-121 69-119 (122)
63 COG2109 BtuR ATP:corrinoid ade 34.3 4.1E+02 0.0089 25.2 12.2 107 69-184 43-159 (198)
64 KOG3339 Predicted glycosyltran 31.8 3.3E+02 0.0071 25.8 8.6 112 58-175 40-158 (211)
65 PF12273 RCR: Chitin synthesis 31.6 32 0.00069 29.9 1.9 18 5-22 1-18 (130)
66 cd04188 DPG_synthase DPG_synth 31.0 2.1E+02 0.0046 25.7 7.5 97 61-175 2-105 (211)
67 COG0848 ExbD Biopolymer transp 31.0 3.7E+02 0.0081 23.7 11.4 51 68-122 80-132 (137)
68 TIGR00824 EIIA-man PTS system, 30.5 3.3E+02 0.0072 22.9 8.6 93 59-165 3-97 (116)
69 COG4746 Uncharacterized protei 29.8 30 0.00066 27.6 1.3 17 158-174 17-33 (80)
70 PRK06871 DNA polymerase III su 29.2 1.7E+02 0.0037 29.7 6.9 80 73-160 65-146 (325)
71 cd02514 GT13_GLCNAC-TI GT13_GL 28.9 4.3E+02 0.0094 26.9 9.8 98 58-166 2-113 (334)
72 PF13177 DNA_pol3_delta2: DNA 28.6 4.2E+02 0.0091 23.5 9.3 97 55-160 17-141 (162)
73 cd00761 Glyco_tranf_GTA_type G 28.5 3.1E+02 0.0066 21.9 10.0 89 61-165 2-92 (156)
74 PRK10714 undecaprenyl phosphat 23.9 7.3E+02 0.016 24.7 12.3 107 54-177 4-115 (325)
75 PRK11498 bcsA cellulose syntha 23.9 1.1E+03 0.023 27.4 12.8 113 53-185 257-374 (852)
76 PRK08769 DNA polymerase III su 22.5 4.7E+02 0.01 26.4 8.7 28 133-160 124-152 (319)
77 COG1954 GlpP Glycerol-3-phosph 22.0 1.4E+02 0.0031 27.7 4.3 41 52-95 20-60 (181)
78 PRK14952 DNA polymerase III su 20.8 7.8E+02 0.017 27.1 10.6 97 55-159 33-156 (584)
79 cd02537 GT8_Glycogenin Glycoge 20.4 7.3E+02 0.016 23.4 9.6 108 58-172 1-111 (240)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=4.6e-114 Score=878.60 Aligned_cols=397 Identities=54% Similarity=0.976 Sum_probs=363.0
Q ss_pred CccchhHHHHHHHHHHHHHHHhcCCc-cccCCC--------------CCCCccccccccccC---CCCCCCCCeEEEEEE
Q 015224 2 GIKVFVTLFMLTSVFLCFVYISTPAK-RFTSLY--------------KFNPIIMTSNKITLK---SNNSSYPVTFAYLLS 63 (411)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~kiAyLI~ 63 (411)
.+|||++|++++++++++|+++++++ +.++.+ ..+.+.++++++.++ .+.++.||||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~ 85 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS 85 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence 47899999999999998876643321 111110 111223455555431 234556999999999
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHHHHHHH
Q 015224 64 ASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIA 143 (411)
Q Consensus 64 ~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~ 143 (411)
||+||.+|++|||++||||+|+||||||+||+..++.++++.++..|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus 86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~ 165 (421)
T PLN03183 86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA 165 (421)
T ss_pred ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhCCC-CcEEEEccCCcccccChhhHHHHHhcCCCCcceEecccCCCccccccccceeeCCCccccCCccceeeeccC
Q 015224 144 MLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIWWVIKQR 222 (411)
Q Consensus 144 ~lL~~~~-wdyfi~LSgsDyPLkt~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~~~k~~~~~~~~~R 222 (411)
.||+.+. |||||||||+||||+||+||++.|++.|+|+|||++++..+|++.+|+++++++||+|..+++.++|.+++|
T Consensus 166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R 245 (421)
T PLN03183 166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245 (421)
T ss_pred HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence 9999777 999999999999999999987777779999999999988999999999999999999998888889999999
Q ss_pred CCCccceEEeeCCCCCCCCcceEEecHHHHHHhhhccCCChHHHHHHhcCCCCCCchhHHHHhhcCCCCCCcccCCCeee
Q 015224 223 SIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSEDYKNTTANHDLHY 302 (411)
Q Consensus 223 ~lP~~~~l~~~~~~~~~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~~~~~pDE~fFqTvl~Ns~~f~~t~vn~~LRy 302 (411)
.+|.++++|+ ||+||+|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+||||
T Consensus 246 ~~P~~~~lf~--------GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRy 317 (421)
T PLN03183 246 SLPTAFKLFT--------GSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHY 317 (421)
T ss_pred cCCccccccC--------CCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeE
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCHHHHHHHhcCCccEEeccCCChHHHHHHHHHHhcccCCCcccCccccCCCCCCCCcccccCCCCc
Q 015224 303 ITWDTPPKQHPRSLGLKDFRRMVLSSRPFARKFKQNSPVLDKIDRDLLKRHRRRYTNGGWCSESERDQACSGFQSENYGV 382 (411)
Q Consensus 303 i~W~~~~~~~P~~l~~~D~~~l~~S~a~FARKF~~d~~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~c~~~~~~~~~ 382 (411)
|+|++++++||++|+.+||++|++|+++|||||+.|++|||+||++|++|..++++|||||.| .||||+|||+ ++
T Consensus 318 I~W~~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~----~~~c~~~~~~-~~ 392 (421)
T PLN03183 318 ISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG----KPKCSRVGDP-AK 392 (421)
T ss_pred EecCCCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC----CCcccccCCc-Cc
Confidence 999999889999999999999999999999999999999999999999999999999999987 5699999999 99
Q ss_pred cCCCchhHHHHHHHHHhhcccCCcCCCCC
Q 015224 383 LRPGPGSRRLKNLLTKLISARNFTKRQCR 411 (411)
Q Consensus 383 ~~pg~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (411)
|||||||+||++||++||++++||++||+
T Consensus 393 ~~p~~~~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 393 IKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred cCCCcHHHHHHHHHHHHhchhccccccCC
Confidence 99999999999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-64 Score=518.29 Aligned_cols=331 Identities=44% Similarity=0.736 Sum_probs=303.9
Q ss_pred CCCCC-eEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeec
Q 015224 52 SSYPV-TFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (411)
Q Consensus 52 ~~~~~-kiAyLI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 130 (411)
.+.++ .+||+.++|+ |.++++|+|+|+|||+|.||||||++|+++++..+++ ++.|++||+|++++..|+||
T Consensus 98 ~~~~~~~~a~~~~v~k-d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~ 170 (439)
T KOG0799|consen 98 KELKPFPAAFLRVVYK-DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYG 170 (439)
T ss_pred ccccccceEEEEeecc-cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecC
Confidence 34555 4455555555 9999999999999999999999999999999977765 45799999999999999999
Q ss_pred CccHHHHHHHHHHHHHhCCC-CcEEEEccCCcccccChhhHHHHHhcCCCCcceEecccCCCccccccccceeeCCCccc
Q 015224 131 GPTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYS 209 (411)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPLkt~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~ 209 (411)
|+|+++|+|+||+.|++.+. |||||||||+|||||||+||.++|+.+ +|.|||+++...+|++.++.++...+++ |+
T Consensus 171 G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~ 248 (439)
T KOG0799|consen 171 GHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YF 248 (439)
T ss_pred CchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hh
Confidence 99999999999999999987 999999999999999999999999866 7899999999999999888888888998 77
Q ss_pred cCCccceeeeccCCCCccceEEeeCCCCCCCCcceEEecHHHHHHhhhccCCChHHHHHHhcCCCCCCchhHHHHhhcCC
Q 015224 210 LNKSEIWWVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYYTNFVSSPEGYFQTVICNSE 289 (411)
Q Consensus 210 ~~k~~~~~~~~~R~lP~~~~l~~~~~~~~~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~~~~~pDE~fFqTvl~Ns~ 289 (411)
.+++.++|.. +|.++++|+ ||.|++|||+||+||+.+ ++|+++++||+++++|||+||||++||+
T Consensus 249 ~~~s~~~~~~----lp~~~ki~~--------Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~- 313 (439)
T KOG0799|consen 249 RNKSPLPWVI----LPTALKLFK--------GSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP- 313 (439)
T ss_pred eecCCCcccc----CCCceEEEe--------cceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc-
Confidence 7778888865 999999999 999999999999999996 7899999999999999999999999998
Q ss_pred CCCCcccCCC--eeeEecCC----CCCCCCCCCCHHHHHHHhcCCc-cEEeccCC--ChHHHHHHHHHHhcccCCCcccC
Q 015224 290 DYKNTTANHD--LHYITWDT----PPKQHPRSLGLKDFRRMVLSSR-PFARKFKQ--NSPVLDKIDRDLLKRHRRRYTNG 360 (411)
Q Consensus 290 ~f~~t~vn~~--LRyi~W~~----~~~~~P~~l~~~D~~~l~~S~a-~FARKF~~--d~~vld~Id~~ll~r~~~~~~~g 360 (411)
|..+.++++ +||+.|+. +++++|+.++..|+..|..++. .|||||.. ++++++.+|.+++++.....++|
T Consensus 314 -~~~~g~~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~ 392 (439)
T KOG0799|consen 314 -FGMPGVFNDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTG 392 (439)
T ss_pred -cCCCCcccchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCcc
Confidence 888889999 99999998 6788999999999999999998 99999994 89999999999999988888899
Q ss_pred ccccCCCCCCCCcccccCCCCccCCCchhHHHHHHHHHhhcccCCcCCC
Q 015224 361 GWCSESERDQACSGFQSENYGVLRPGPGSRRLKNLLTKLISARNFTKRQ 409 (411)
Q Consensus 361 ~w~~~~~~~~~~c~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 409 (411)
+|| ..+..+++|+..++. ..+.|||++.|++.++..++..++|+..|
T Consensus 393 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 393 GWC-DHSLRTLPCSELGDA-VKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred ccc-ccccccccccccccc-eeeccCCcchhHHhhhhccccchhhhccC
Confidence 999 444789999999999 99999999999999999999999999876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.4e-52 Score=400.89 Aligned_cols=237 Identities=35% Similarity=0.563 Sum_probs=159.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 58 FAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 58 iAyLI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
|||||++|+++++++++|++++|+|+|.||||||+|++...++++++.. .+++||++++++..|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~------~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLI------SCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHH------CT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhc------ccCCceeecccccccccCCccHHHH
Confidence 7999999998999999999999999999999999999988888877643 4789999999999999999999999
Q ss_pred HHHHHHHHHhC-CCCcEEEEccCCcccccChhhHHHHHhcCCCCcceEecccCCCccccccccceeeCCCccccCCccce
Q 015224 138 TLHAIAMLLRC-CKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSSHLGWKMNKRAKPIIIDPGLYSLNKSEIW 216 (411)
Q Consensus 138 tL~~~~~lL~~-~~wdyfi~LSgsDyPLkt~~~i~~~fs~~~~~~nFIe~~~~~gwk~~~R~~~~i~dpgly~~~k~~~~ 216 (411)
||.||+.|++. ++|||||+|||+||||+|+++|.++|+..+++.+|+++....++....|+++...++..+.
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~------- 147 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPF------- 147 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEE-------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccc-------
Confidence 99999999995 5699999999999999999999999987767889999876544433245443333221111
Q ss_pred eeeccCCCCccceEEeeCCCCCCCCcceEEecHHHHHHhhhccCCChHHHHHHh-cCCCCCCchhHHHHhhcCCCCCCcc
Q 015224 217 WVIKQRSIPSAFKLYTEDTHPKEHGSAWTILSRPFAEYCIMGWDNLPRSLLLYY-TNFVSSPEGYFQTVICNSEDYKNTT 295 (411)
Q Consensus 217 ~~~~~R~lP~~~~l~~~~~~~~~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf-~~~~~pDE~fFqTvl~Ns~~f~~t~ 295 (411)
..++ ++|+ |||||+|||++|+||+. |......+++| +++++|||.||||+++|++.|++++
T Consensus 148 --~~~~------~~~~--------GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~ 209 (244)
T PF02485_consen 148 --FRKR------TLYK--------GSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTI 209 (244)
T ss_dssp --EEEE--------EE--------E-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-T
T ss_pred --cccc------cccc--------cceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccc
Confidence 0111 8899 99999999999999995 33344445544 5999999999999999998899999
Q ss_pred cCCCeeeEecCCCCCCCCC-----CCCHHHHHHHh
Q 015224 296 ANHDLHYITWDTPPKQHPR-----SLGLKDFRRMV 325 (411)
Q Consensus 296 vn~~LRyi~W~~~~~~~P~-----~l~~~D~~~l~ 325 (411)
+++++|||+|++..+.||+ .++++|++.|.
T Consensus 210 ~~~~~r~i~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 210 VNRNLRYIDWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp TTSSSEEE-BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred cCCCEEEEECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 9999999999944455554 55788888873
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.87 E-value=4.1 Score=41.75 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=72.5
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCc-eee
Q 015224 52 SSYPVTFAYLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKP-NLV 127 (411)
Q Consensus 52 ~~~~~kiAyLI~~hk~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r-~~V 127 (411)
++..|++..+|-+++ ..+.+.++|+.|.. |.+.=+|-||-.|.+.-.+.++++.+..| ..++++++... ...
T Consensus 36 ~~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~~ 111 (384)
T TIGR03469 36 PEAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCCC
Confidence 345678999999998 67999999999853 43445677888887765555554433222 12378887632 234
Q ss_pred eecCccHHHHHHHHHHHHHhCCC-CcEEEEccCCcccccCh-hhHHHHHh
Q 015224 128 TYRGPTMLATTLHAIAMLLRCCK-WDWFINLSASDYPLVTQ-DDLIEAFS 175 (411)
Q Consensus 128 ~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsDyPLkt~-~~i~~~fs 175 (411)
.|+|- ..|.-++++.+-+... -||++.+.+.+.+-... .++.+.+.
T Consensus 112 g~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 112 GWSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred CCcch--HHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 55553 3444455555543333 79999999988863222 34444443
No 5
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=90.84 E-value=7.6 Score=39.57 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCCHHHHHHHHHHhhcccccccccc--EEEeCCceeee
Q 015224 54 YPVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN--VYIVGKPNLVT 128 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~r~~V~ 128 (411)
..|++..+|-+++ ..+.+.+.|+.+- .|+-.++| +|..+++...+.++++.+ .+++ |+++.......
T Consensus 39 ~~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~------~~p~~~i~~v~~~~~~G 110 (373)
T TIGR03472 39 AWPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRA------DFPDADIDLVIDARRHG 110 (373)
T ss_pred CCCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHH------hCCCCceEEEECCCCCC
Confidence 3577899999998 5678888888774 35545544 666666554444444332 3454 55554332222
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 129 Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
|.+ -+.+..+ +++....||++.+.+.+.| +.+-|.+...
T Consensus 111 ~~~--K~~~l~~----~~~~a~ge~i~~~DaD~~~--~p~~L~~lv~ 149 (373)
T TIGR03472 111 PNR--KVSNLIN----MLPHARHDILVIADSDISV--GPDYLRQVVA 149 (373)
T ss_pred CCh--HHHHHHH----HHHhccCCEEEEECCCCCc--ChhHHHHHHH
Confidence 222 2333333 3455568999999998877 5565655543
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=89.55 E-value=6.3 Score=40.46 Aligned_cols=105 Identities=9% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeee
Q 015224 53 SYPVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTY 129 (411)
Q Consensus 53 ~~~~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~W 129 (411)
+..|+++.+|-+|+ +.+.+.+.++++. .|...+ |=+|-.+++...+.+++..+ .+++++++.... .
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~ei-iVvdD~s~d~t~~~l~~~~~------~~~~v~~i~~~~---n 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYEV-IAINDGSSDNTGEILDRLAA------QIPRLRVIHLAE---N 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHHHH------hCCcEEEEEcCC---C
Confidence 44578999999999 6788998888775 454444 44666666655555554332 467788775221 1
Q ss_pred cCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHH
Q 015224 130 RGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAF 174 (411)
Q Consensus 130 gg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 174 (411)
+| ... ++..+++....||++.+.+.+.|-.. ..++.+.|
T Consensus 120 ~G--ka~----aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~ 159 (420)
T PRK11204 120 QG--KAN----ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHF 159 (420)
T ss_pred CC--HHH----HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHH
Confidence 23 222 23334444568999999999987432 23444444
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=87.28 E-value=18 Score=37.73 Aligned_cols=107 Identities=7% Similarity=0.107 Sum_probs=64.2
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCE-EEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeee
Q 015224 53 SYPVTFAYLLSASKGDTIKLKRALLALY---HPGNH-YLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (411)
Q Consensus 53 ~~~~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~-y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 128 (411)
...|+++.+|-+|+ ..+.+.++|+.+. .|... -+|=+|-.+++...+.+++..+ .++++.++.... +
T Consensus 46 ~~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~------~~~~v~v~~~~~--~ 116 (439)
T TIGR03111 46 GKLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN------EFPGLSLRYMNS--D 116 (439)
T ss_pred CCCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH------hCCCeEEEEeCC--C
Confidence 45678999999999 6799999998884 34432 2566788777765444443322 356666542111 1
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHHh
Q 015224 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFS 175 (411)
Q Consensus 129 Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~fs 175 (411)
+|.+ .++..+++.+.-||++.+.+.+.|-.. ..++...|.
T Consensus 117 -~Gka------~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 117 -QGKA------KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred -CCHH------HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 3422 222234444557899999999998332 234444453
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.70 E-value=13 Score=34.31 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=61.1
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHc---CC-CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCc
Q 015224 57 TFAYLLSASKGDTIKLKRALLALY---HP-GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (411)
Q Consensus 57 kiAyLI~~hk~d~~~l~rLl~aLy---~p-~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 132 (411)
+++.+|.+++ +.+.+.++|+.+. .| .+.=+|=+|-.+++...+.++.+. ...++|+++.... +|.
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~----~~~ 69 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPK----RIQ 69 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCC----CCc
Confidence 4677888888 7889999988884 22 233345567666665555555432 2356788886442 121
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHH
Q 015224 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (411)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~f 174 (411)
..|-- ..++....||++.|.+.|.+ +.+.|.+.+
T Consensus 70 --~~a~N----~g~~~a~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 70 --SAGLN----IGIRNSRGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred --hHHHH----HHHHHhCCCEEEEECCCccC--CHHHHHHHH
Confidence 12322 23333468999999999986 555555555
No 9
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=82.89 E-value=29 Score=32.31 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCCCCCeEEEEEEecCCCHHHHHHHHHHHcC---CC--CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCc
Q 015224 50 NNSSYPVTFAYLLSASKGDTIKLKRALLALYH---PG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKP 124 (411)
Q Consensus 50 ~~~~~~~kiAyLI~~hk~d~~~l~rLl~aLy~---p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r 124 (411)
.....+|+++.+|.+++ +.+.|.++|+.+.. |. ..++|..|. +++...+.++++. .. +|.++...
T Consensus 23 ~~~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~-s~d~t~~~~~~~~-------~~-~v~~i~~~ 92 (251)
T cd06439 23 PDPAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDG-STDGTAEIAREYA-------DK-GVKLLRFP 92 (251)
T ss_pred CCCCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECC-CCccHHHHHHHHh-------hC-cEEEEEcC
Confidence 34556789999999999 67889888888742 33 245555555 4444333343321 11 67776432
Q ss_pred eeeeecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHhc
Q 015224 125 NLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSD 176 (411)
Q Consensus 125 ~~V~Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs~ 176 (411)
.. . +...|--.+++.+ .-||++++.+.+.|- .+.+.+.+..
T Consensus 93 ~~---~--g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 93 ER---R--GKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred CC---C--ChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 11 2 2344444444433 349999999999995 5666655543
No 10
>PRK10063 putative glycosyl transferase; Provisional
Probab=80.74 E-value=34 Score=32.77 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=62.4
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC-----CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeec
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALYH-----PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy~-----p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 130 (411)
|++..+|.+++ ..+.+.+.|+.+.. ..+.=+|-+|..|++.-.+.++++. ...+++++..++ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 67888999998 68889998888841 2345578889888776555444321 112466665332 2
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHH
Q 015224 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (411)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~f 174 (411)
|.. .|.-.+++. ..-+|++.|.+.|.......++...+
T Consensus 69 G~~--~A~N~Gi~~----a~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 69 GIY--DAMNKGIAM----AQGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CHH--HHHHHHHHH----cCCCEEEEEeCCcccCcCHHHHHHHH
Confidence 322 233333333 34699999999999876443343334
No 11
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=80.41 E-value=21 Score=37.26 Aligned_cols=94 Identities=9% Similarity=0.135 Sum_probs=60.7
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeec
Q 015224 54 YPVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYR 130 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wg 130 (411)
..|+++.+|-+|+ +.+.+.++++++- .|+-. +|-+|-.+++...+.+++..+ ++++++++... ..+
T Consensus 73 ~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~------~~~~v~vv~~~---~n~ 141 (444)
T PRK14583 73 GHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLA------EDPRLRVIHLA---HNQ 141 (444)
T ss_pred CCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHH------hCCCEEEEEeC---CCC
Confidence 4578999999999 6778888888874 35434 466776666655555554432 45677776421 123
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEEccCCcccc
Q 015224 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (411)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (411)
| . . .++...++....||++.+.+.+.|-
T Consensus 142 G--k-a---~AlN~gl~~a~~d~iv~lDAD~~~~ 169 (444)
T PRK14583 142 G--K-A---IALRMGAAAARSEYLVCIDGDALLD 169 (444)
T ss_pred C--H-H---HHHHHHHHhCCCCEEEEECCCCCcC
Confidence 3 1 1 2333444555689999999999874
No 12
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=78.70 E-value=30 Score=37.26 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=60.3
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHH----HcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeee
Q 015224 54 YPVTFAYLLSASKGDTIKLKRALLA----LYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTY 129 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~~~l~rLl~a----Ly~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~W 129 (411)
+.|+++.+|-+|+ +.+.+.++|+. ++.|+-.++|=.|. +++.-.+.+++.. ..+||++++..+. -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~-ndd~T~~~v~~l~------~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYP-NDPATLREVDRLA------ARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECC-CChhHHHHHHHHH------HHCCCeEEEEeCC---C
Confidence 4788999999999 67777777764 33455455554453 4333333444322 2578887543211 1
Q ss_pred cCccHHHHHHHHHHHHHh----CC-CCcEEEEccCCccccc
Q 015224 130 RGPTMLATTLHAIAMLLR----CC-KWDWFINLSASDYPLV 165 (411)
Q Consensus 130 gg~S~V~AtL~~~~~lL~----~~-~wdyfi~LSgsDyPLk 165 (411)
|+.+-..|.-.+++.+.. .+ ++|+++.+.+.|.|=.
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~P 173 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHP 173 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCc
Confidence 334555555555555432 22 3899999999888543
No 13
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=78.54 E-value=17 Score=33.68 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=58.6
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecC
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALYH---PG-NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy~---p~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 131 (411)
|++..+|.+|+ ..+.|.++|+.|.. |. ..-+|=+|. +++...+.+++..+..+ ....++.++...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 36788999998 68999999999853 32 334456786 66554554554332111 112345544322211 2
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHH
Q 015224 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIE 172 (411)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~ 172 (411)
+. .. ++...++....||++++.+.+++ ..+-|.+
T Consensus 74 ~k-~~----a~n~g~~~a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 YK-AG----ALAEGMKVAKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred Cc-hH----HHHHHHHhCCCCEEEEEcCCCCC--ChHHHHH
Confidence 21 11 12234444568999999998887 3444544
No 14
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=78.39 E-value=31 Score=31.13 Aligned_cols=104 Identities=9% Similarity=0.049 Sum_probs=58.7
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccc--cEEEeCCceeeeec
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVN--NVYIVGKPNLVTYR 130 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~--NV~vv~~r~~V~Wg 130 (411)
|++..+|-+++ ..+.+.++|+.+. +|.-. +|=||-.+++...+.++++.+ .++ ++.++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~e-iivVdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYE-ILFCVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeE-EEEEeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 45788899998 5667888888885 24433 344666666655555555433 233 34444322222 2
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
+..... ++..+++....||++++.+.+.+ +.+-|.+.+.
T Consensus 71 ~~~~~~----~~n~g~~~a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 71 INPKVN----NLIKGYEEARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred CCHhHH----HHHHHHHhCCCCEEEEECCCceE--ChhHHHHHHH
Confidence 222222 22234444558999999887764 5566655543
No 15
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=78.12 E-value=1.2 Score=31.39 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred eEEEE-EEecCCCHHHHHHHHHHHcCCCCEEEEEEe
Q 015224 57 TFAYL-LSASKGDTIKLKRALLALYHPGNHYLIHMD 91 (411)
Q Consensus 57 kiAyL-I~~hk~d~~~l~rLl~aLy~p~n~y~IHvD 91 (411)
++..+ .++|. |.++|..+++.+ .|++.++||=|
T Consensus 8 ~v~~~~fSgHa-d~~~L~~~i~~~-~p~~vilVHGe 41 (43)
T PF07521_consen 8 RVEQIDFSGHA-DREELLEFIEQL-NPRKVILVHGE 41 (43)
T ss_dssp EEEESGCSSS--BHHHHHHHHHHH-CSSEEEEESSE
T ss_pred EEEEEeecCCC-CHHHHHHHHHhc-CCCEEEEecCC
Confidence 34443 67898 999999999999 89999999965
No 16
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=77.70 E-value=46 Score=33.55 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=61.8
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcC----------CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEe
Q 015224 52 SSYPVTFAYLLSASKGDTIKLKRALLALYH----------PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIV 121 (411)
Q Consensus 52 ~~~~~kiAyLI~~hk~d~~~l~rLl~aLy~----------p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 121 (411)
.++.+.+..+|-+++ ..+.+.++++.+.. ..+.=+|=||-.|++.-.+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 457789999999999 67888888877642 22344566777776655554554432110 001347776
Q ss_pred CCceeeeecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcc-cccChhhHHHHHh
Q 015224 122 GKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDY-PLVTQDDLIEAFS 175 (411)
Q Consensus 122 ~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDy-PLkt~~~i~~~fs 175 (411)
.... + .| .-.|.-.+++. +.-||++++.+.+. +....+.+.+.+.
T Consensus 143 ~~~~--N-~G--~~~A~~~Gi~~----a~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLR--N-KG--KGGAVRIGMLA----SRGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCC--C-CC--hHHHHHHHHHH----ccCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4321 1 12 22333333332 33588888887764 3333344555443
No 17
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=75.91 E-value=27 Score=31.06 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHH-HHHHhhccccccccccEEEeCCceeeeecCc
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQRE-IAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~-l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 132 (411)
|++..+|.+++++.+.+.++|+.|... .+.-+|=+|..+++..-+. ++.+.. ..+++.++.... ..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~------~~~~~~~~~~~~-----~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA------QDPRIKVVFREE-----NG 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh------cCCCEEEEEccc-----CC
Confidence 467889999984339999999998632 1233455666665533222 222221 234566553221 12
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHH
Q 015224 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAF 174 (411)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 174 (411)
....|--.+++. ..-||+..+.+.|.+-.. .+.+.+.+
T Consensus 70 g~~~a~n~g~~~----a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 70 GISAATNSALEL----ATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CHHHHHHHHHHh----hcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 233443344433 346999999999877322 24444444
No 18
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=75.45 E-value=31 Score=32.17 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=59.1
Q ss_pred eEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHH
Q 015224 57 TFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (411)
Q Consensus 57 kiAyLI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 136 (411)
++..+|.+++ ..+.|.++|+.|..--..+ |=||..|.+... ++.+ ..++.++.. .|+|++.-
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~~~ei-ivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~- 62 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWAVDEI-IVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQ- 62 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcccCEE-EEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHH-
Confidence 3677888988 6889999999997431334 557887776533 3321 234566542 56666422
Q ss_pred HHHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHHh
Q 015224 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFS 175 (411)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~fs 175 (411)
...+++...-||++.|.+.+.+-.. .+++.+.+.
T Consensus 63 -----~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 63 -----RNFALELATNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred -----HHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 2223444456899999999986443 344555554
No 19
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=75.44 E-value=20 Score=35.83 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=54.2
Q ss_pred CCeEEEEEEecCCCH--HHHHHHHHHH-----------cCCCCEEEEEEe--CC-CCHHHHHHHHHHhhcccccc---cc
Q 015224 55 PVTFAYLLSASKGDT--IKLKRALLAL-----------YHPGNHYLIHMD--RE-APEKEQREIAEFVANEPVFR---MV 115 (411)
Q Consensus 55 ~~kiAyLI~~hk~d~--~~l~rLl~aL-----------y~p~n~y~IHvD--~k-a~~~~~~~l~~~v~~~~~~~---~~ 115 (411)
...+|||+.|..|-. .....+.+++ .||+|.++ +| .+ .+. +++++..+..|... ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~i~v---d~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKDLSK---SEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCcCCH---HHHHHHHHHhccCCcccCC
Confidence 578999999887542 4455555665 26665444 47 33 222 23333333333222 13
Q ss_pred ccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccC
Q 015224 116 NNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (411)
Q Consensus 116 ~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (411)
..|.++.+. -.|-.+..+++-..|++++ .-+||+++.
T Consensus 91 ~KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 91 KKILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ceEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 356666543 3455555666666778887 889999886
No 20
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=75.31 E-value=25 Score=32.17 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=71.8
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHH
Q 015224 61 LLSASKGDTIKLKRALLAL----YHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aL----y~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 136 (411)
++++++|-..||.+|++.+ ++++.++ |--+.+.+...-.++++......-....+..+-+.+. -.+.=++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~i-vt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~--~~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYI-VTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQS--YLTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEE-EEcCCcccHHHHHHHHHhccccceeeccceEEEechh--hHhhHHHHHH
Confidence 4667777789999999999 6544333 3333323332222333321110001122333333322 1223467888
Q ss_pred HHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHhcCCCCcceEeccc
Q 015224 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDLPRDLNFIQHSS 188 (411)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs~~~~~~nFIe~~~ 188 (411)
+.+.++..+++..+==-+-|=.|.++|+.=..-+.++|.-.....-|||...
T Consensus 80 ~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 80 AFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8888888887754332455668899999999999888854344467887643
No 21
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=72.73 E-value=56 Score=30.61 Aligned_cols=108 Identities=9% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHH----cCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceee
Q 015224 52 SSYPVTFAYLLSASKGDTIKLKRALLAL----YHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLV 127 (411)
Q Consensus 52 ~~~~~kiAyLI~~hk~d~~~l~rLl~aL----y~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V 127 (411)
.+..|++..+|-+++ ..+.+..+++.+ ....+.=+|-||-.|++.-.+.++++.+.. ...+|.++....
T Consensus 5 ~~~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~-- 77 (243)
T PLN02726 5 GEGAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG-- 77 (243)
T ss_pred CCCCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC--
Confidence 344578999999998 677777766555 223244467778777765544444332211 013555553211
Q ss_pred eecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 128 TYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 128 ~Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
-.|.+ .|.-.++ +...-||++.|.+.+.+ ..+.|...+.
T Consensus 78 -n~G~~--~a~n~g~----~~a~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 78 -KLGLG--TAYIHGL----KHASGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred -CCCHH--HHHHHHH----HHcCCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 12322 2333333 33346899999998874 5555555443
No 22
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=72.64 E-value=12 Score=34.31 Aligned_cols=113 Identities=15% Similarity=0.227 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhcccccccccc--EEEeCCceeeeec
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN--VYIVGKPNLVTYR 130 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~r~~V~Wg 130 (411)
|+++.+|.+++ ..+.+.+.|+.+-+ |+-.++| +|-.+++...+.+++..+ .+++ |+++.... -.
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~------~~~~~~v~vi~~~~---~~ 69 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAA------RYPRVRVRVIRRPR---NP 69 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHH------TTGG-GEEEEE-------H
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHH------HcCCCceEEeecCC---CC
Confidence 56899999998 78899999999964 4444444 564454443344444333 2333 46654221 01
Q ss_pred Cc-cHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHhcC-CCCcceEe
Q 015224 131 GP-TMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDL-PRDLNFIQ 185 (411)
Q Consensus 131 g~-S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs~~-~~~~nFIe 185 (411)
|. +...|.-+ +++....||++.|.+.+.| ..+-|.+.+... ..+...+.
T Consensus 70 g~~~k~~a~n~----~~~~~~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 70 GPGGKARALNE----ALAAARGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHH----HHHH---SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred CcchHHHHHHH----HHHhcCCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 22 23333333 4443458999999999988 444444433222 34455554
No 23
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=70.37 E-value=54 Score=29.79 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=57.1
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CCC-EEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecC
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALYH---PGN-HYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy~---p~n-~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 131 (411)
|++..+|-+++.+.+.+++.|+.+-. |.. .=+|=+|-.+++.-.+.++++.. .. ++.++... ..+|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~------~~-~~~~~~~~--~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV------EY-GYRYLTRP--DNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc------cc-CceEEEeC--CCCCC
Confidence 46788888998545778888888742 331 22344676666654444443211 11 34444321 23343
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
.. .+ +..+++....||++.|.+.|++ ..+.|.+..+
T Consensus 72 ~~--~~----~n~~~~~a~~d~i~~lD~D~~~--~~~~l~~l~~ 107 (234)
T cd06421 72 KA--GN----LNNALAHTTGDFVAILDADHVP--TPDFLRRTLG 107 (234)
T ss_pred cH--HH----HHHHHHhCCCCEEEEEccccCc--CccHHHHHHH
Confidence 21 11 1223333458999999999998 3456655554
No 24
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=69.49 E-value=34 Score=33.63 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHcCCCCE--EEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCc
Q 015224 55 PVTFAYLLSASKGDTIKLKRALLALYHPGNH--YLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (411)
Q Consensus 55 ~~kiAyLI~~hk~d~~~l~rLl~aLy~p~n~--y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 132 (411)
.|+++-+|..|. ..+-+...|..|...... ++|=+|-.+++...+.+++. .+++|.+++.....-|+|-
T Consensus 2 ~~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg 72 (305)
T COG1216 2 MPKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGG 72 (305)
T ss_pred CcceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhh
Confidence 367888899998 688888888888743332 22346888877766655531 1689999987766766655
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEEccCCc
Q 015224 133 TMLATTLHAIAMLLRCCKWDWFINLSASD 161 (411)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsD 161 (411)
-. .+++.++..+ .+ ++++-..|
T Consensus 73 ~n-----~g~~~a~~~~-~~-~~l~LN~D 94 (305)
T COG1216 73 FN-----RGIKYALAKG-DD-YVLLLNPD 94 (305)
T ss_pred hh-----HHHHHHhcCC-Cc-EEEEEcCC
Confidence 43 5667777643 22 55555666
No 25
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=69.25 E-value=22 Score=29.83 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=61.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
+|.+++ ..+.|.++|+.|-. +...+ |=+|-.+++...+.++++.+ ...+++++..... ...-.+
T Consensus 3 vip~~n-~~~~l~~~l~sl~~q~~~~~ei-ivvdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~~ 69 (169)
T PF00535_consen 3 VIPTYN-EAEYLERTLESLLKQTDPDFEI-IVVDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSAA 69 (169)
T ss_dssp EEEESS--TTTHHHHHHHHHHHSGCEEEE-EEEECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHHH
T ss_pred EEEeeC-CHHHHHHHHHHHhhccCCCEEE-EEeccccccccccccccccc------ccccccccccccc-----cccccc
Confidence 566777 57888888887752 34444 44666666665666665542 2467887754321 234444
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHHhcC
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAFSDL 177 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~fs~~ 177 (411)
.-.+++.+ .-+|+..+.+.|++... .+++.+++...
T Consensus 70 ~n~~~~~a----~~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 70 RNRGIKHA----KGEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp HHHHHHH------SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred cccccccc----ceeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 45544444 34699999999999887 77888887643
No 26
>PRK10073 putative glycosyl transferase; Provisional
Probab=66.28 E-value=71 Score=32.03 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCc
Q 015224 55 PVTFAYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP 132 (411)
Q Consensus 55 ~~kiAyLI~~hk~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~ 132 (411)
.|.+..+|-+++ ..+.|.+.|+.|... .+.=+|-||-.|++...+-++++.+ ..++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~------~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAE------NYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHh------hCCCEEEEECCC----CCh
Confidence 467899999998 578999999998632 2334556666666655555555432 457888875432 343
Q ss_pred cHHHHHHHHHHHHHhCCCCcEEEEccCCcccc
Q 015224 133 TMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (411)
Q Consensus 133 S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (411)
+ .|--.+ ++...=||+..|.+.|+..
T Consensus 74 ~--~arN~g----l~~a~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 S--VARNTG----LAVATGKYVAFPDADDVVY 99 (328)
T ss_pred H--HHHHHH----HHhCCCCEEEEECCCCccC
Confidence 3 332233 3334469999999999954
No 27
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=65.99 E-value=58 Score=29.36 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=53.9
Q ss_pred EEEecCCCHHHHHHHHHHHc---CCC--CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHH
Q 015224 61 LLSASKGDTIKLKRALLALY---HPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTML 135 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy---~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 135 (411)
+|.+++ +.+.+.++|+.|. +|. ..++| ||-.+++...+.++ +... ...++|.++.... ...+|. .
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g~--~ 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEVIL-VDDHSTDGTVQILE-FAAA----KPNFQLKILNNSR-VSISGK--K 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEEEE-EcCCCCcChHHHHH-HHHh----CCCcceEEeeccC-cccchh--H
Confidence 466776 7899999999884 343 34544 45545544333333 2211 1245677665332 112222 2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 136 ATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 136 ~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
.| +..+++...-||++++.+.+.+ ..+.|.+.+.
T Consensus 72 ~a----~n~g~~~~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NA----LTTAIKAAKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HH----HHHHHHHhcCCEEEEECCCccc--CHHHHHHHHH
Confidence 22 2233444457999999999977 3455555543
No 28
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=63.59 E-value=76 Score=27.63 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=59.4
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHH
Q 015224 61 LLSASKGDTIKLKRALLALYHP----GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~p----~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 136 (411)
+|.+|+ ..+.+.++|+.+..- .+.=+|=+|..+++...+.++.+.. ..+.++++.... ..+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~-----n~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSR-----NFGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccC-----CCCccH
Confidence 466777 678888888887532 2444566776666655555554432 234444442221 112334
Q ss_pred HHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHhc-CCCCcceEe
Q 015224 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSD-LPRDLNFIQ 185 (411)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs~-~~~~~nFIe 185 (411)
|.-.+++.+ .=||++.|.+.|.+ +.+.+...++. ...+..++-
T Consensus 70 a~n~g~~~a----~gd~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 70 AVRAGFKAA----RGDIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred HHHHHHHHh----cCCEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEE
Confidence 444444433 23999999999875 55656665543 233444443
No 29
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=62.93 E-value=2.2e+02 Score=32.01 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCCCCCeEEEEEEecCCCHH----HHHHHHHHHc---CCCCEEEEEEeCCCCHHH----HHHHHHHhhccccccccccE
Q 015224 50 NNSSYPVTFAYLLSASKGDTI----KLKRALLALY---HPGNHYLIHMDREAPEKE----QREIAEFVANEPVFRMVNNV 118 (411)
Q Consensus 50 ~~~~~~~kiAyLI~~hk~d~~----~l~rLl~aLy---~p~n~y~IHvD~ka~~~~----~~~l~~~v~~~~~~~~~~NV 118 (411)
.+.+..++.+.+|-+|+.|++ .++..++.+. ++++..++-+|-.+++.. .+.+++..+..+ ..++|
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~---~~~~i 194 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELG---GEGRI 194 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcC---CCCcE
Confidence 345667899999999997765 4555555443 445555566665554431 222333222111 23467
Q ss_pred EEeCCceeeeecCccHHHHHHHHHHHHHhC--CCCcEEEEccCCcccccC-hhhHHHHHhcCCCCcceEe
Q 015224 119 YIVGKPNLVTYRGPTMLATTLHAIAMLLRC--CKWDWFINLSASDYPLVT-QDDLIEAFSDLPRDLNFIQ 185 (411)
Q Consensus 119 ~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~--~~wdyfi~LSgsDyPLkt-~~~i~~~fs~~~~~~nFIe 185 (411)
++...... .|...- + +..+++. +.+||++.|.+...|-.. ..++...|. .+.+.-.|.
T Consensus 195 ~yr~R~~n---~~~KaG----N-l~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~-~dP~vGlVQ 255 (691)
T PRK05454 195 FYRRRRRN---VGRKAG----N-IADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLME-ANPRAGLIQ 255 (691)
T ss_pred EEEECCcC---CCccHH----H-HHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHh-hCcCEEEEe
Confidence 76543222 222111 1 1223333 349999999998887643 345555553 234455554
No 30
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=62.88 E-value=83 Score=29.28 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=53.7
Q ss_pred CeEEEEEEecCCCHHHHHHHHHHHcC---CC-CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecC
Q 015224 56 VTFAYLLSASKGDTIKLKRALLALYH---PG-NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG 131 (411)
Q Consensus 56 ~kiAyLI~~hk~d~~~l~rLl~aLy~---p~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg 131 (411)
|.+..+|-+++ ..+.+.++|+.+.. |. +.=+|-||-.+++...+.++++.. + ...+|.++... ...|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~--~---~~~~i~~~~~~---~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL--P---SIFRVVVVPPS---QPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc--C---CCeeEEEecCC---CCCc
Confidence 46788899998 67899999999853 32 233556676666654444443210 0 11234433321 2223
Q ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEccCCcccc
Q 015224 132 PTMLATTLHAIAMLLRCCKWDWFINLSASDYPL 164 (411)
Q Consensus 132 ~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPL 164 (411)
.+ .| +...++...-||++.+.+.|.+-
T Consensus 72 ~~--~a----~n~g~~~a~gd~i~~~DaD~~~~ 98 (241)
T cd06427 72 KP--KA----CNYALAFARGEYVVIYDAEDAPD 98 (241)
T ss_pred hH--HH----HHHHHHhcCCCEEEEEcCCCCCC
Confidence 32 22 23344445579999999998844
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=62.70 E-value=69 Score=29.26 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=55.8
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 58 FAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 58 iAyLI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
+..+|.+|+...+.+.++|+.+......=+|=||-.+++.....+... ...+.+.++.. .++|. ..|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~----~~~g~--~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITV----PHPGK--RRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEec----CCCCh--HHH
Confidence 567888998433999999999986433334555666665544444221 13455666542 23443 233
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccC
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVT 166 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt 166 (411)
--.++ +...-||++.|.+.+.|-..
T Consensus 69 ~n~g~----~~a~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 69 LAEGI----RHVTTDIVVLLDSDTVWPPN 93 (235)
T ss_pred HHHHH----HHhCCCEEEEECCCceeChh
Confidence 33333 33457999999999998744
No 32
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=60.85 E-value=68 Score=27.01 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=52.6
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
+|.+++ ..+.+.++++.|.. +...++| +|-.+.+...+.+.+. .+++.++.... + .+...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~---------~~~~~~~~~~~--~---~g~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLREL---------FPEVRLIRNGE--N---LGFGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHh---------CCCeEEEecCC--C---cChHHH
Confidence 566777 68999999999963 2334544 5555665555555432 23566554221 1 122333
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHH
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~f 174 (411)
--.++ +....+|++.+.+.+++- .+.+....
T Consensus 66 ~n~~~----~~~~~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 66 NNQGI----REAKGDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred hhHHH----hhCCCCEEEEECCCcEEC--ccHHHHHH
Confidence 33333 333679999999988864 34444433
No 33
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=59.99 E-value=55 Score=31.37 Aligned_cols=85 Identities=9% Similarity=0.041 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHHHHHHHH
Q 015224 65 SKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAM 144 (411)
Q Consensus 65 hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~ 144 (411)
++.+.+.|+++|++|.. ++.-+|-||-.+++. +.++..+ ...++|+++...... | .-.|-=.+++.
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~--G---~a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ--G---IAGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc--c---hHHHHHHHHHH
Confidence 34357899999999985 455678899876533 2232222 245788887533212 2 22344445566
Q ss_pred HHhCCCCcEEEEccCCcccc
Q 015224 145 LLRCCKWDWFINLSASDYPL 164 (411)
Q Consensus 145 lL~~~~wdyfi~LSgsDyPL 164 (411)
|++ ...||+++|...+.|-
T Consensus 69 a~~-~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFR-RGVQGVLLLDQDSRPG 87 (281)
T ss_pred HHH-CCCCEEEEECCCCCCC
Confidence 654 2489999999999985
No 34
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=59.85 E-value=1.1e+02 Score=26.77 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=51.2
Q ss_pred EEEecCCCHHHHHHHHHHHc------CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccH
Q 015224 61 LLSASKGDTIKLKRALLALY------HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy------~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 134 (411)
+|.+++ ..+.+.++++.|. .+.-.+ |=+|-.+++...+.++.+.+ ..+||.++... .+.| .
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~ei-ivvdd~s~d~t~~~~~~~~~------~~~~i~~i~~~--~n~G---~ 68 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEI-IFVDDGSTDRTLEILRELAA------RDPRVKVIRLS--RNFG---Q 68 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEE-EEEeCCCCccHHHHHHHHHh------hCCCEEEEEec--CCCC---c
Confidence 566777 5778888777653 122234 44676676654444444322 35678776422 1222 2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 135 LATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 135 V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
..|.-.+++ ...-||++.+.+.+. + +.+.+...++
T Consensus 69 ~~a~n~g~~----~a~~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 69 QAALLAGLD----HARGDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHH----hcCCCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 233333333 333589998887555 4 3445555443
No 35
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=58.94 E-value=59 Score=32.47 Aligned_cols=25 Identities=20% Similarity=0.091 Sum_probs=14.6
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHH
Q 015224 55 PVTFAYLLSASKGDTIKLKRALLAL 79 (411)
Q Consensus 55 ~~kiAyLI~~hk~d~~~l~rLl~aL 79 (411)
.+.+|||+.|..|.......+.++|
T Consensus 22 rl~hAyLf~G~~G~~~~A~~~A~~l 46 (290)
T PRK07276 22 RLNHAYLFSGDFASFEMALFLAQSL 46 (290)
T ss_pred CcceeeeeeCCccHHHHHHHHHHHH
Confidence 4678888887665433333444444
No 36
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=58.93 E-value=1.7e+02 Score=32.89 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHH---cCCC-CEEEEEEeCCCCHH--------------HHHHHHHHhhcccccc
Q 015224 52 SSYPVTFAYLLSASKGDTIKLKRALLAL---YHPG-NHYLIHMDREAPEK--------------EQREIAEFVANEPVFR 113 (411)
Q Consensus 52 ~~~~~kiAyLI~~hk~d~~~l~rLl~aL---y~p~-n~y~IHvD~ka~~~--------------~~~~l~~~v~~~~~~~ 113 (411)
++..|+++.+|-+|+.+.+.++++++++ +.|. +.=++=+|-.+++. .+.++++..+
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~------ 200 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR------ 200 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH------
Confidence 3445789999999996566667667665 3453 33344556554332 2344544432
Q ss_pred ccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccCh-hhHHHHHhcCCCCcceE
Q 015224 114 MVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQ-DDLIEAFSDLPRDLNFI 184 (411)
Q Consensus 114 ~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~-~~i~~~fs~~~~~~nFI 184 (411)
..+|+++.... +.++-. .++..+++...-||++.+.+.+.|-..- .++..+|.+ +.+..++
T Consensus 201 -~~~v~yi~r~~--n~~~KA------gnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 201 -KLGVNYITRPR--NVHAKA------GNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred -HcCcEEEECCC--CCCCCh------HHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 23566664322 222211 1233455555679999999999986432 444555532 3344454
No 37
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=56.73 E-value=59 Score=32.06 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=24.3
Q ss_pred eeecCccHHHHHHHHHHHHHhCCC-CcEEEEccCC
Q 015224 127 VTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (411)
Q Consensus 127 V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (411)
+-|.--.|-.+.-+++-..|++++ .-+|++++.+
T Consensus 93 II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~ 127 (261)
T PRK05818 93 IIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRN 127 (261)
T ss_pred EeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECC
Confidence 555555666667777666777877 8888888864
No 38
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=56.61 E-value=85 Score=30.47 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=59.6
Q ss_pred EEEEecCCCH-HHHHHHHHHHcCC---C-CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccH
Q 015224 60 YLLSASKGDT-IKLKRALLALYHP---G-NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (411)
Q Consensus 60 yLI~~hk~d~-~~l~rLl~aLy~p---~-n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 134 (411)
.+|.++. .. +.+.++|..|... . ..=+|-||-.|++.....+.+... ....++|+++..... .|++
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~- 72 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI- 72 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH-
Confidence 3577777 56 9999999998632 1 124789998887765554433111 123568888743211 2333
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHH
Q 015224 135 LATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (411)
Q Consensus 135 V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~f 174 (411)
.|--.+++. ..-||++.|.+.+.+ +.+-|.+.+
T Consensus 73 -~a~N~g~~~----A~gd~i~fLD~D~~~--~~~wL~~ll 105 (299)
T cd02510 73 -RARIAGARA----ATGDVLVFLDSHCEV--NVGWLEPLL 105 (299)
T ss_pred -HHHHHHHHH----ccCCEEEEEeCCccc--CccHHHHHH
Confidence 443343333 346999999999987 444444444
No 39
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=56.01 E-value=71 Score=31.95 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=53.3
Q ss_pred CCCeEEEEEEecCCCH--HHH---------------HHHHHHHcCCCCEEEEEEeCCC---CHHHHHHHHHHhhcccccc
Q 015224 54 YPVTFAYLLSASKGDT--IKL---------------KRALLALYHPGNHYLIHMDREA---PEKEQREIAEFVANEPVFR 113 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~--~~l---------------~rLl~aLy~p~n~y~IHvD~ka---~~~~~~~l~~~v~~~~~~~ 113 (411)
..+.||||+.|..|.. ... .+.+....|||-++ |--|.+. +.++-.++.+.+...|..+
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 3577899998776532 111 23333445887443 3334332 3444444555444333211
Q ss_pred ccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccCC
Q 015224 114 MVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (411)
Q Consensus 114 ~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (411)
.-.|. +-|..-.|-...-+++-..|++++ .-+||+++.+
T Consensus 95 -~~kv~-------ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 95 -PYKIY-------IIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred -CceEE-------EEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 12233 444455666666666666777777 8888888765
No 40
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=55.13 E-value=1.1e+02 Score=27.79 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=57.7
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
+|.+++ ..+.|.++|+.|.. |+..=+|-||-.+++...+.++++.+.. ...+++++.....-. .+-+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~-~~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSP-SPKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCC-CCccHHHH
Confidence 567777 68999999999964 3344567888887766555555543221 123455442111000 11223333
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHH
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAF 174 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 174 (411)
.-.+ ++...-||++.|.+.|++... ...+...+
T Consensus 76 ~N~g----~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 76 KNQA----IAQSSGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHH----HHhcCCCEEEEECCCccCChhHHHHHHHHH
Confidence 3333 333456999999999985443 23344444
No 41
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=54.08 E-value=56 Score=32.52 Aligned_cols=92 Identities=17% Similarity=0.354 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHc-CCCCEEEE-EEeC---CCC--HHHHHHHHHHhhccccccccccEEEeCCceeeeecCcc-HHHHHH
Q 015224 68 DTIKLKRALLALY-HPGNHYLI-HMDR---EAP--EKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPT-MLATTL 139 (411)
Q Consensus 68 d~~~l~rLl~aLy-~p~n~y~I-HvD~---ka~--~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S-~V~AtL 139 (411)
+++||..++..+. .|+-.++| |.-. +.. ...++.|.... ..+||.+= =...+..++.+ -++...
T Consensus 145 ~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-------~~pNv~~K-lSG~~~~~~~~w~~~~v~ 216 (279)
T COG3618 145 DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-------RRPNVWAK-LSGVYAYSDESWTVEDVR 216 (279)
T ss_pred ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHHH-------hCCCeEEE-EeeecccccCCCCHHHHH
Confidence 5677777777665 77766666 5433 222 33466676543 47898752 23445666666 556666
Q ss_pred HHHHHHHhCCCCcEEEEccCCcccccChhh
Q 015224 140 HAIAMLLRCCKWDWFINLSASDYPLVTQDD 169 (411)
Q Consensus 140 ~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~ 169 (411)
--++.+.+...||.+|. |||+|..+...
T Consensus 217 p~~e~~i~~fg~dR~vf--GSdwPv~~l~~ 244 (279)
T COG3618 217 PYVEELIELFGWDRFVF--GSDWPVTSLES 244 (279)
T ss_pred HHHHHHHHhcCccceEe--cCCCCcccccC
Confidence 66667777777998887 99999987644
No 42
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=51.82 E-value=1.6e+02 Score=25.49 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=53.5
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
+|.+++ ..+.++++|+.+.. +...+ |=+|-.+++...+.+..+.+.. ..+.+++.... .|+....+
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~ei-ivvdd~s~d~t~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~~~ 70 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFEV-IIADDGSTEETKELIEEFKSQF----PIPIKHVWQED-----EGFRKAKI 70 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCEE-EEEeCCCchhHHHHHHHHHhhc----CCceEEEEcCC-----cchhHHHH
Confidence 567777 68999999999953 23333 4466666665444444432211 12234443221 12222222
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
-- .+++.+.-+|++.|.+.+.| +.+-|.+.+.
T Consensus 71 ~n----~g~~~a~g~~i~~lD~D~~~--~~~~l~~~~~ 102 (182)
T cd06420 71 RN----KAIAAAKGDYLIFIDGDCIP--HPDFIADHIE 102 (182)
T ss_pred HH----HHHHHhcCCEEEEEcCCccc--CHHHHHHHHH
Confidence 22 23333457999999999988 4455555443
No 43
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=51.27 E-value=1.5e+02 Score=27.01 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=57.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLH 140 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~ 140 (411)
+|.++++..+.+.++|+.+... +.-+|=||..+++.... ..++ ..+++.++.... + .| ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~-~~~~--------~~~~i~~i~~~~--n-~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIEL-RLRL--------NSEKIELIHLGE--N-LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHH-Hhhc--------cCCcEEEEECCC--c-ee--hHHhhhH
Confidence 5677874449999999999865 44456688866554322 2211 245677764322 2 22 2333333
Q ss_pred HHHHHHhCCCCcEEEEccCCcccccChhhHHHH
Q 015224 141 AIAMLLRCCKWDWFINLSASDYPLVTQDDLIEA 173 (411)
Q Consensus 141 ~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~ 173 (411)
+++.+.. ...||+++|.+.+++ ..+.|.+.
T Consensus 67 g~~~a~~-~~~d~v~~lD~D~~~--~~~~l~~l 96 (237)
T cd02526 67 GIKAALE-NGADYVLLFDQDSVP--PPDMVEKL 96 (237)
T ss_pred HHHHHHh-CCCCEEEEECCCCCc--CHhHHHHH
Confidence 4444432 148999999999996 46777665
No 44
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=48.60 E-value=1.5e+02 Score=29.16 Aligned_cols=98 Identities=13% Similarity=0.256 Sum_probs=53.3
Q ss_pred CCCeEEEEEEecCCCH--HHHHHHH-HHH--------cCCCCEEEEEEeCC-------CCHHHHHHHHHHhhcccccccc
Q 015224 54 YPVTFAYLLSASKGDT--IKLKRAL-LAL--------YHPGNHYLIHMDRE-------APEKEQREIAEFVANEPVFRMV 115 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~--~~l~rLl-~aL--------y~p~n~y~IHvD~k-------a~~~~~~~l~~~v~~~~~~~~~ 115 (411)
..+-+|||+.|..++. ..+..++ +.+ .|||-+ +|--+.+ -+.++-.++.+.+...|..+ .
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~-~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g-~ 89 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYH-FIARETSATSNAKNISIEQIRKLQDFLSKTSAIS-G 89 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEE-EEeccccccccCCcccHHHHHHHHHHHhhCcccC-C
Confidence 3577899999876321 1222222 222 467633 3432321 13444445555554334211 1
Q ss_pred ccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccCC
Q 015224 116 NNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (411)
Q Consensus 116 ~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (411)
-.|. +-+..-.|-.+.-+++-..|++++ .-+|++++.+
T Consensus 90 ~KVi-------II~~ae~mt~~AANALLKtLEEPP~~t~fILit~~ 128 (263)
T PRK06581 90 YKVA-------IIYSAELMNLNAANSCLKILEDAPKNSYIFLITSR 128 (263)
T ss_pred cEEE-------EEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 2333 444555666666676666778887 8899998876
No 45
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=46.94 E-value=1.6e+02 Score=24.25 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=51.9
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATT 138 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~At 138 (411)
+|.+++ ..+.|.++|+.+-... +.=+|=+|-.+++...+.+.++... ...++.++... ...| ...|-
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~~ 70 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGAL 70 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHHH
Confidence 466777 6799999999987431 3334445665665544444433211 01234333211 1122 23333
Q ss_pred HHHHHHHHhCCCCcEEEEccCCcccccChhhHHHH
Q 015224 139 LHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEA 173 (411)
Q Consensus 139 L~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~ 173 (411)
-. +++...-+|++++.+.|++ +.+.|...
T Consensus 71 n~----~~~~~~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 71 NA----GLRHAKGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HH----HHHhcCCCEEEEECCCCCc--ChHHHHHH
Confidence 33 3333367999999999877 44555554
No 46
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=46.76 E-value=2.1e+02 Score=25.30 Aligned_cols=90 Identities=20% Similarity=0.308 Sum_probs=48.2
Q ss_pred EEEEecCCC-HHHHHHHHHHHcC---CCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHH
Q 015224 60 YLLSASKGD-TIKLKRALLALYH---PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTML 135 (411)
Q Consensus 60 yLI~~hk~d-~~~l~rLl~aLy~---p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V 135 (411)
.+|-++.++ ++.+.++|+.+.. +...++|=.|..+++...+.++.+.+ .++ +.++..... .|. .
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~------~~~-i~~i~~~~n---~G~--~ 69 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR------KLP-LKVVPLEKN---RGL--G 69 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh------cCC-eEEEEcCcc---ccH--H
Confidence 356666533 4689999999963 33444443344435544443444332 223 655532211 222 2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEccCCccccc
Q 015224 136 ATTLHAIAMLLRCCKWDWFINLSASDYPLV 165 (411)
Q Consensus 136 ~AtL~~~~~lL~~~~wdyfi~LSgsDyPLk 165 (411)
.|--. +++.+.-||++.|.+.|++..
T Consensus 70 ~a~N~----g~~~a~gd~i~~lD~Dd~~~~ 95 (201)
T cd04195 70 KALNE----GLKHCTYDWVARMDTDDISLP 95 (201)
T ss_pred HHHHH----HHHhcCCCEEEEeCCccccCc
Confidence 23223 333445799999999998653
No 47
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=46.66 E-value=1.3e+02 Score=33.98 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=58.4
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHH----HHcCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceee
Q 015224 52 SSYPVTFAYLLSASKGDTIKLKRALL----ALYHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLV 127 (411)
Q Consensus 52 ~~~~~kiAyLI~~hk~d~~~l~rLl~----aLy~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V 127 (411)
.+.+++++.+|=+|+ +...+.++++ +++.|+-.+++-.|.. ++.-.+.+++.. ..+|+++++....
T Consensus 59 ~~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l~------~~~p~~~~v~~~~-- 128 (727)
T PRK11234 59 KPDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAVC------ARFPNVHKVVCAR-- 128 (727)
T ss_pred cCCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHHH------HHCCCcEEEEeCC--
Confidence 345688999999998 6766666666 4577886666655532 222233333322 2568876543111
Q ss_pred eecCccHHHHHHHHHHHHHhC----C-CCcEEEEccCCcccccC
Q 015224 128 TYRGPTMLATTLHAIAMLLRC----C-KWDWFINLSASDYPLVT 166 (411)
Q Consensus 128 ~Wgg~S~V~AtL~~~~~lL~~----~-~wdyfi~LSgsDyPLkt 166 (411)
-|.-+-..|--.+++.+.+. . .++.++.+-+.|.|=..
T Consensus 129 -~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 129 -PGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred -CCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 12223444444444444331 2 37888888888875433
No 48
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=46.34 E-value=1.1e+02 Score=28.06 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCC-CCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCc------cHHHHHHHH
Q 015224 69 TIKLKRALLALYHPGNHYLIHMDRE-APEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGP------TMLATTLHA 141 (411)
Q Consensus 69 ~~~l~rLl~aLy~p~n~y~IHvD~k-a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~------S~V~AtL~~ 141 (411)
...+-..++|+-|...+++|..=+. ....|...++ ..+||.+..-.....|..- ...+.-++-
T Consensus 18 TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~----------~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~ 87 (172)
T PF02572_consen 18 TAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK----------KLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEE 87 (172)
T ss_dssp HHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG----------GGT--EEEE--TT----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH----------hCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHH
Confidence 4778888999999999999999887 3344544433 4677776543334555433 233334444
Q ss_pred HHHHHhCCCCcEEEE---ccCCcccccChhhHHHHHhcCCCCcceE
Q 015224 142 IAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (411)
Q Consensus 142 ~~~lL~~~~wdyfi~---LSgsDyPLkt~~~i~~~fs~~~~~~nFI 184 (411)
++.++..+.||-+|+ +-+-++=+.+.+++.++++..+...+-|
T Consensus 88 a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 88 AKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 444555556999987 6677788899999999998666665554
No 49
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=46.02 E-value=2.5e+02 Score=26.07 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCC-CHHHHHHHHHHhhccccccccccEEEeCCce--eeeecCc-----cHHHHHHH
Q 015224 69 TIKLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGKPN--LVTYRGP-----TMLATTLH 140 (411)
Q Consensus 69 ~~~l~rLl~aLy~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~--~V~Wgg~-----S~V~AtL~ 140 (411)
...+-..++|+-|....++|..=+.. ...|...++ ..+||.+..-.. ...+... ..+++-+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 58899999999999999999998865 345555443 345677653222 1222222 22333444
Q ss_pred HHHHHHhCCCCcEEEE---ccCCcccccChhhHHHHHhcCCCCcceE
Q 015224 141 AIAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (411)
Q Consensus 141 ~~~~lL~~~~wdyfi~---LSgsDyPLkt~~~i~~~fs~~~~~~nFI 184 (411)
-++.++....||-+|+ +.+-+|=+.+-+++.++++..|.+.+-|
T Consensus 106 ~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 4555666666999986 6778888999999999998777766655
No 50
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=44.50 E-value=1.8e+02 Score=29.18 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=51.4
Q ss_pred CCCeEEEEEEecCCCH--HHHHHHHHHHc-----------------------CCCCEEEEEEeCC-CCHHHHHHHHHHhh
Q 015224 54 YPVTFAYLLSASKGDT--IKLKRALLALY-----------------------HPGNHYLIHMDRE-APEKEQREIAEFVA 107 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~--~~l~rLl~aLy-----------------------~p~n~y~IHvD~k-a~~~~~~~l~~~v~ 107 (411)
..+.+|||+.|..|-. .....+.+++. ||+-.| +-.|.+ .+.++-.++.+.+.
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~-i~~~~~~i~id~ir~l~~~~~ 103 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL-VAPDGQSIKKDQIRYLKEEFS 103 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE-eccccccCCHHHHHHHHHHHh
Confidence 3477899999887642 33444445553 665333 444433 23333333333333
Q ss_pred ccccccccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccC
Q 015224 108 NEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (411)
Q Consensus 108 ~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (411)
..|..+ ...|.++.+. -.|-....+++...|++++ .-+||+++.
T Consensus 104 ~~~~~~-~~kvviI~~a-------~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 104 KSGVES-NKKVYIIEHA-------DKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred hCCccc-CceEEEeehH-------hhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 333222 2356666543 2444445556666777776 888888776
No 51
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.38 E-value=3.3e+02 Score=27.55 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCeEEEEEEecCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCCHHHHHHHHHHhhcccccccc-ccEEEeCCceeeeec
Q 015224 55 PVTFAYLLSASKGDTIKLKRALLALY---HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMV-NNVYIVGKPNLVTYR 130 (411)
Q Consensus 55 ~~kiAyLI~~hk~d~~~l~rLl~aLy---~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~-~NV~vv~~r~~V~Wg 130 (411)
.|++..+|=+++.+.+-+++++.++. .|+..++|=.| .+++...+.+++... ++ +++.++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d-~~~d~~~~~~~~~~~------~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDD-GSTDETYEILEELGA------EYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECC-CCChhHHHHHHHHHh------hcCcceEEEec-------
Confidence 58999999999966668999998886 45545555555 455555555555432 33 46665510
Q ss_pred CccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccC-hhhHHHHH
Q 015224 131 GPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT-QDDLIEAF 174 (411)
Q Consensus 131 g~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt-~~~i~~~f 174 (411)
.....+-..++...++....|+++.+.+...|-+. ..++...|
T Consensus 119 -~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f 162 (439)
T COG1215 119 -EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPF 162 (439)
T ss_pred -cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhh
Confidence 12223334555567776678999988888776543 23344444
No 52
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=44.08 E-value=2.8e+02 Score=26.04 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCC-CHHHHHHHHHHhhccccccccccEEEeCCceeeeecC------ccHHHHHHHH
Q 015224 69 TIKLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRG------PTMLATTLHA 141 (411)
Q Consensus 69 ~~~l~rLl~aLy~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg------~S~V~AtL~~ 141 (411)
...+-..++++-+.....+|..=+.. ...|...++ ..+||.+..-.....|.. .-..+..+.-
T Consensus 37 t~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~ 106 (191)
T PRK05986 37 TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEE 106 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHH
Confidence 47788888999999999999998866 445555543 235777764333334432 1233444555
Q ss_pred HHHHHhCCCCcEEEE---ccCCcccccChhhHHHHHhcCCCCcceE
Q 015224 142 IAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (411)
Q Consensus 142 ~~~lL~~~~wdyfi~---LSgsDyPLkt~~~i~~~fs~~~~~~nFI 184 (411)
++.++..+.||-+|+ +-+-+|=|.+.+++.++++..|.+.+-|
T Consensus 107 a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 107 AKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 666666667999986 6778888999999999998777666655
No 53
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.82 E-value=2.3e+02 Score=25.03 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=57.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 60 YLLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 60 yLI~~hk~d~~~l~rLl~aLy~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
.+|-+++ ..+.|.+.|+.+.+.. ..=+|=+|-.+++...+.++++.+..| .++.++... ++.+...+
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-----~~~~~~~~~-----~~~G~~~~ 70 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDP-----FIIILIRNG-----KNLGVARN 70 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-----ceEEEEeCC-----CCccHHHH
Confidence 3567777 5788999998886421 233566677776665555555443211 234443222 33344444
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
.-.+ ++....+|+++|.+.|.+. .+.|.+.+.
T Consensus 71 ~n~g----~~~~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 71 FESL----LQAADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHH----HHhCCCCEEEEECCCcccC--hhHHHHHHH
Confidence 3333 4445689999999998875 344555443
No 54
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.60 E-value=2.3e+02 Score=25.06 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=51.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATT 138 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~At 138 (411)
+|.+++ ..+.+.++|+.|.... ..=+|=+|..+++.-.+.+++.. ...++.++... -+-|....+
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~--~n~g~~~~~--- 68 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLP--ENLGGAGGF--- 68 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-------CCCceEEEECc--cccchhhHH---
Confidence 567787 5788999999996321 22356678777766555554332 11225554322 122322222
Q ss_pred HHHHHHHHhCCCCcEEEEccCCcccc
Q 015224 139 LHAIAMLLRCCKWDWFINLSASDYPL 164 (411)
Q Consensus 139 L~~~~~lL~~~~wdyfi~LSgsDyPL 164 (411)
=.++..++ ....||++.+.+.+.+-
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcC
Confidence 23333343 33489999999888874
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=43.56 E-value=1.9e+02 Score=25.96 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=54.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYHP---GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~p---~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
+|.+++ ..+.|.++|+.+... .+.=+|=||-.+++.-.+.++++.+ ..+++.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~------~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK------EYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH------hCCceEEEecC---CCCChH--HH
Confidence 566777 578888988888642 2333566777666554444444332 34556555321 124433 33
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
--.+++. ..-||++.|.+.|.+ +.+.|...+.
T Consensus 70 ~n~g~~~----a~gd~i~~lD~D~~~--~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKA----ARGDVIVVMDADLSH--PPEYIPELLE 101 (224)
T ss_pred HHHHHHH----cCCCEEEEEECCCCC--CHHHHHHHHH
Confidence 3344443 334899999988875 3454544443
No 56
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.35 E-value=2.2e+02 Score=24.65 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=51.1
Q ss_pred EEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHH
Q 015224 60 YLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLAT 137 (411)
Q Consensus 60 yLI~~hk~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~A 137 (411)
.+|.+++ ..+.+.++|..|... .+.=+|=+|..+++...+.++++.. . .+.++.. ..+| ...|
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~------~--~~~~~~~----~~~g--~~~a 66 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED------K--ITYWISE----PDKG--IYDA 66 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh------h--cEEEEec----CCcC--HHHH
Confidence 3567787 578899999888532 1223566787777665555544321 1 2333332 2233 3333
Q ss_pred HHHHHHHHHhCCCCcEEEEccCCccccc
Q 015224 138 TLHAIAMLLRCCKWDWFINLSASDYPLV 165 (411)
Q Consensus 138 tL~~~~~lL~~~~wdyfi~LSgsDyPLk 165 (411)
.-. +++...-||++.|.+.|.+..
T Consensus 67 ~n~----~~~~a~~~~v~~ld~D~~~~~ 90 (202)
T cd06433 67 MNK----GIALATGDIIGFLNSDDTLLP 90 (202)
T ss_pred HHH----HHHHcCCCEEEEeCCCcccCc
Confidence 333 444445799999999998764
No 57
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.31 E-value=1.8e+02 Score=26.01 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=52.8
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHH
Q 015224 59 AYLLSASKGDTIKLKRALLALYHP--GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (411)
Q Consensus 59 AyLI~~hk~d~~~l~rLl~aLy~p--~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 136 (411)
..+|.+++ ..+.+.++|+.+... .+.-+|=+|..+.+...+.++ . .+++++... .|.+ .
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~--~ 62 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRA--R 62 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHH--H
Confidence 45677777 677888888887532 234456678777655333222 1 456655422 2322 1
Q ss_pred HHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHH
Q 015224 137 TTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAF 174 (411)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~f 174 (411)
++..+++...-+|++.+.+.++| +.+.+.+.+
T Consensus 63 ----a~n~g~~~a~~~~i~~~D~D~~~--~~~~l~~l~ 94 (221)
T cd02522 63 ----QMNAGAAAARGDWLLFLHADTRL--PPDWDAAII 94 (221)
T ss_pred ----HHHHHHHhccCCEEEEEcCCCCC--ChhHHHHHH
Confidence 22223333446999999999988 455665544
No 58
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=41.84 E-value=1.8e+02 Score=29.56 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=57.4
Q ss_pred CCCeEEEEEEecCCCHH-------------------------HHHHHHHHHcCCCCEEEEEEeCC---CCHHHHHHHHHH
Q 015224 54 YPVTFAYLLSASKGDTI-------------------------KLKRALLALYHPGNHYLIHMDRE---APEKEQREIAEF 105 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~~-------------------------~l~rLl~aLy~p~n~y~IHvD~k---a~~~~~~~l~~~ 105 (411)
..+.||||+.|-.|-+. .-.+++.+-.|||-++ |--+.+ -+.++..++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHH
Confidence 35778998877766321 1224555667888544 333332 234454455555
Q ss_pred hhccccccccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccCC
Q 015224 106 VANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (411)
Q Consensus 106 v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (411)
+...|..+ .-.|.++.+. -.|-.+.-+++-..|++++ .-+||+++.+
T Consensus 100 ~~~~~~~g-~~kV~iI~~a-------e~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 100 LYEHARLG-GAKVVWLPDA-------ALLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred HhhccccC-CceEEEEcch-------HhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 54333211 1234444443 4666777777777888888 9999999975
No 59
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=41.17 E-value=14 Score=29.46 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=15.0
Q ss_pred cCCcccccChhhHHHHH
Q 015224 158 SASDYPLVTQDDLIEAF 174 (411)
Q Consensus 158 SgsDyPLkt~~~i~~~f 174 (411)
.|.|||++|+.||...|
T Consensus 12 ~~a~FPI~s~~eL~~al 28 (75)
T PF07747_consen 12 KGADFPIKSPMELLPAL 28 (75)
T ss_dssp TTSSSTTBHHHHHHHH-
T ss_pred hcCCCCCCCHHHHHHhC
Confidence 58999999999999987
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=35.12 E-value=3.2e+02 Score=26.94 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCCeEEEEEEecCCC--HHHHHHHHHHH-------cCCCCEEEEEEeCCC-CHHHHHHHHHHhhccccccccccEEEeCC
Q 015224 54 YPVTFAYLLSASKGD--TIKLKRALLAL-------YHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGK 123 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d--~~~l~rLl~aL-------y~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~ 123 (411)
....+|||+.|..|- ......+.++| .||+-..+...|.+. +.++-.++...+...|..+ ...|.++.+
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~-~~kv~iI~~ 101 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEG-DKKVIIIYN 101 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccC-CceEEEEec
Confidence 357789999987764 23445555555 255544444445443 2333333444444445432 335666654
Q ss_pred ceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccC
Q 015224 124 PNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (411)
Q Consensus 124 r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (411)
.. .|-.+.-+++-..|++++ ..+||+++.
T Consensus 102 ad-------~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 102 SE-------KMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred hh-------hcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 32 334444555556777777 889998873
No 61
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=34.99 E-value=3.6e+02 Score=27.26 Aligned_cols=100 Identities=20% Similarity=0.165 Sum_probs=54.0
Q ss_pred CCCeEEEEEEecCCCH--HHHHHHHHH-----------------------HcCCCCEEEEEEeCC--CCHHHHHHHHHHh
Q 015224 54 YPVTFAYLLSASKGDT--IKLKRALLA-----------------------LYHPGNHYLIHMDRE--APEKEQREIAEFV 106 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~--~~l~rLl~a-----------------------Ly~p~n~y~IHvD~k--a~~~~~~~l~~~v 106 (411)
..+.+|||+.|..|-+ .....+.++ -.|||..++-.-+++ -+.++-.++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4477899998877642 222223333 347775554333332 2344444455555
Q ss_pred hccccccccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccCCc
Q 015224 107 ANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSASD 161 (411)
Q Consensus 107 ~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgsD 161 (411)
...|.. ....|.++.+.+ .|-.+.-+++-..|++++ .-+||+++.+-
T Consensus 99 ~~~~~~-~~~kv~iI~~a~-------~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~ 146 (328)
T PRK05707 99 VQTAQL-GGRKVVLIEPAE-------AMNRNAANALLKSLEEPSGDTVLLLISHQP 146 (328)
T ss_pred hhcccc-CCCeEEEECChh-------hCCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 433422 123566665444 444555555555777776 78888887653
No 62
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=34.64 E-value=2.8e+02 Score=23.42 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHc--CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEe
Q 015224 69 TIKLKRALLALY--HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIV 121 (411)
Q Consensus 69 ~~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 121 (411)
.+++...++++. +|+..++|..|++++-+.-..+-..++.. .+.+|.++
T Consensus 69 ~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~a----G~~~v~l~ 119 (122)
T TIGR02803 69 RETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQA----GYLKIGLV 119 (122)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCEEEEE
Confidence 467777777664 68888999999999887665555555432 24456554
No 63
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=34.27 E-value=4.1e+02 Score=25.16 Aligned_cols=107 Identities=20% Similarity=0.155 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCC-CHHHHHHHHHHhhccccccccccEEEeCCceeeeecCcc------HHHHHHHH
Q 015224 69 TIKLKRALLALYHPGNHYLIHMDREA-PEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPT------MLATTLHA 141 (411)
Q Consensus 69 ~~~l~rLl~aLy~p~n~y~IHvD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S------~V~AtL~~ 141 (411)
...+-..++++-|.-..++|.+=+-. ...|+..+..+ -.+|.+..-..-++|.... ..++-+.-
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---------~~~v~~~~~~~g~tw~~~~~~~d~~aa~~~w~~ 113 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---------GLGVEFHGMGEGFTWETQDREADIAAAKAGWEH 113 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---------ccceeEEecCCceeCCCcCcHHHHHHHHHHHHH
Confidence 47888899999999888888887665 45566655421 1456666555668888764 34444444
Q ss_pred HHHHHhCCCCcEEEE---ccCCcccccChhhHHHHHhcCCCCcceE
Q 015224 142 IAMLLRCCKWDWFIN---LSASDYPLVTQDDLIEAFSDLPRDLNFI 184 (411)
Q Consensus 142 ~~~lL~~~~wdyfi~---LSgsDyPLkt~~~i~~~fs~~~~~~nFI 184 (411)
++.++..+.||-+|+ .=+-.|=+.+.+|+.++|...|.....|
T Consensus 114 a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vI 159 (198)
T COG2109 114 AKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVI 159 (198)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEE
Confidence 555667667987764 2233455589999999998777766655
No 64
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.81 E-value=3.3e+02 Score=25.80 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=62.3
Q ss_pred EEEEEEecCCCHHHHHHHHHHH---cCCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccH
Q 015224 58 FAYLLSASKGDTIKLKRALLAL---YHPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (411)
Q Consensus 58 iAyLI~~hk~d~~~l~rLl~aL---y~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 134 (411)
.-+++++++|-...+.||++++ |.|+.++ --|.. ..-.++.+.+....+ .....|..+-..| .|.=.=.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI--~a~tD--~mS~~k~~~F~~~~a-~~~a~~~~ipRsR-eVgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI--AADTD--EMSEQKARSFELSLA-HCKAKNYEIPRSR-EVGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE--EecCc--hhhHHHHHhhhcccc-ccchhheecchhh-hhhhhhhhh
Confidence 5788899888888999999888 4555433 22222 112223333222111 1123455543333 354444566
Q ss_pred HHHHHHHHHHHHhC---CCCcEEEEcc-CCcccccChhhHHHHHh
Q 015224 135 LATTLHAIAMLLRC---CKWDWFINLS-ASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 135 V~AtL~~~~~lL~~---~~wdyfi~LS-gsDyPLkt~~~i~~~fs 175 (411)
|-.++.++...+.. ..-|-+...- |.|.|+-=-..+.+++.
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 67777766655422 1234444444 79999988888887774
No 65
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.63 E-value=32 Score=29.87 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=9.5
Q ss_pred chhHHHHHHHHHHHHHHH
Q 015224 5 VFVTLFMLTSVFLCFVYI 22 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (411)
||++.+++.++++++|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687665555444444433
No 66
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=31.04 E-value=2.1e+02 Score=25.70 Aligned_cols=97 Identities=11% Similarity=0.113 Sum_probs=52.4
Q ss_pred EEEecCCCHHHHHHHHHHHcC------CCCEEEEEEeCCCCHHHHHHHHHHhhcccccccccc-EEEeCCceeeeecCcc
Q 015224 61 LLSASKGDTIKLKRALLALYH------PGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNN-VYIVGKPNLVTYRGPT 133 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~------p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~N-V~vv~~r~~V~Wgg~S 133 (411)
+|.+++ ..+.+.++|+.+.. +.+.=+|-+|-.+++.-.+.++.+.+ ..++ ++++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455665 45556655555532 13344567888887765555555433 2333 35553221 13433
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHh
Q 015224 134 MLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFS 175 (411)
Q Consensus 134 ~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs 175 (411)
.|...+++.+ .-||++.|.+.+. .+.+.|.+.+.
T Consensus 72 --~a~~~g~~~a----~gd~i~~ld~D~~--~~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAA----RGDYILFADADLA--TPFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHh----cCCEEEEEeCCCC--CCHHHHHHHHH
Confidence 3444444444 3499999999887 34455555444
No 67
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=31.02 E-value=3.7e+02 Score=23.69 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHc--CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeC
Q 015224 68 DTIKLKRALLALY--HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVG 122 (411)
Q Consensus 68 d~~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~ 122 (411)
+.+.+...|.++. .++..++|+.|++++-....++-..++.. -+.+|.++.
T Consensus 80 ~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~a----G~~~v~L~t 132 (137)
T COG0848 80 SLEELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEA----GFKKVGLVT 132 (137)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHc----CCceEEEEe
Confidence 5677888888777 44447899999999888776666666532 356777664
No 68
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=30.48 E-value=3.3e+02 Score=22.94 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=59.5
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCC-CCEEEEEEeCCCCH-HHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHH
Q 015224 59 AYLLSASKGDTIKLKRALLALYHP-GNHYLIHMDREAPE-KEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLA 136 (411)
Q Consensus 59 AyLI~~hk~d~~~l~rLl~aLy~p-~n~y~IHvD~ka~~-~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~ 136 (411)
-++|.+|.+=.+-+...++.+..+ .+.+.|-+....+. ...+++++.++..+ .-..|-|+.+ ...|.+..++
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~---~~~~vivltD---l~GGSp~n~a 76 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLD---TEEEVLFLVD---IFGGSPYNAA 76 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcC---CCCCEEEEEe---CCCCCHHHHH
Confidence 578889984467888888888744 45777777665554 45677777775422 2345666542 5556666665
Q ss_pred HHHHHHHHHHhCCCCcEEEEccCCccccc
Q 015224 137 TTLHAIAMLLRCCKWDWFINLSASDYPLV 165 (411)
Q Consensus 137 AtL~~~~~lL~~~~wdyfi~LSgsDyPLk 165 (411)
+.+ +.+. .-+..+||--+|+.
T Consensus 77 ~~~-----~~~~---~~~~vIsG~NLpml 97 (116)
T TIGR00824 77 ARI-----IVDK---PHMDVIAGVNLPLL 97 (116)
T ss_pred HHH-----Hhhc---CCEEEEEecCHHHH
Confidence 432 2222 23569999999984
No 69
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.82 E-value=30 Score=27.63 Aligned_cols=17 Identities=24% Similarity=0.724 Sum_probs=15.6
Q ss_pred cCCcccccChhhHHHHH
Q 015224 158 SASDYPLVTQDDLIEAF 174 (411)
Q Consensus 158 SgsDyPLkt~~~i~~~f 174 (411)
-|.|||++++.+|...|
T Consensus 17 k~a~fPInn~~eL~~AL 33 (80)
T COG4746 17 KGADFPINNPEELVAAL 33 (80)
T ss_pred ccCCCCCCCHHHHHHhc
Confidence 38999999999999987
No 70
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=29.15 E-value=1.7e+02 Score=29.68 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCCEEEEEEeCC-CCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-
Q 015224 73 KRALLALYHPGNHYLIHMDRE-APEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK- 150 (411)
Q Consensus 73 ~rLl~aLy~p~n~y~IHvD~k-a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~- 150 (411)
.|++.+-.|||-+++-..|.+ -+.++-.++.+.+...|..+ .-.|.++.+ .-.|-.+.-+++-..|++++
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-~~KV~iI~~-------a~~m~~~AaNaLLKtLEEPp~ 136 (325)
T PRK06871 65 CHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQG-GNKVVYIQG-------AERLTEAAANALLKTLEEPRP 136 (325)
T ss_pred HHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccC-CceEEEEec-------hhhhCHHHHHHHHHHhcCCCC
Confidence 344555568875443333433 24455445555554444222 123444443 34666667777777778887
Q ss_pred CcEEEEccCC
Q 015224 151 WDWFINLSAS 160 (411)
Q Consensus 151 wdyfi~LSgs 160 (411)
.-+||+++.+
T Consensus 137 ~~~fiL~t~~ 146 (325)
T PRK06871 137 NTYFLLQADL 146 (325)
T ss_pred CeEEEEEECC
Confidence 8899998865
No 71
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=28.88 E-value=4.3e+02 Score=26.92 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=56.0
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCC-----CCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCce--eeeec
Q 015224 58 FAYLLSASKGDTIKLKRALLALYHP-----GNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPN--LVTYR 130 (411)
Q Consensus 58 iAyLI~~hk~d~~~l~rLl~aLy~p-----~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~--~V~Wg 130 (411)
++-+|++.+ .++.++|+|++|..- ...++|--|.... +..+.++.+. .+|.++.... ....|
T Consensus 2 ~PVlv~ayN-Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~-~~~~~v~~~~---------~~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACN-RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE-EVADVAKSFG---------DGVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecC-CHHHHHHHHHHHHhccccCCCceEEEEeCCCch-HHHHHHHhhc---------cccEEEEcccccccccC
Confidence 356788998 599999999999743 2446677777432 2233332221 1233332211 11111
Q ss_pred ------C-ccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccC
Q 015224 131 ------G-PTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVT 166 (411)
Q Consensus 131 ------g-~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt 166 (411)
+ ..+...-..++..++.....+++|.|-+.+.|-..
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPd 113 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPD 113 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHh
Confidence 2 23333333466677765569999999998876543
No 72
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=28.59 E-value=4.2e+02 Score=23.53 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=47.2
Q ss_pred CCeEEEEEEecCCC--HHHHHHHHHHHc----------------------CCCCEEEEEEeCC---CCHHHHHHHHHHhh
Q 015224 55 PVTFAYLLSASKGD--TIKLKRALLALY----------------------HPGNHYLIHMDRE---APEKEQREIAEFVA 107 (411)
Q Consensus 55 ~~kiAyLI~~hk~d--~~~l~rLl~aLy----------------------~p~n~y~IHvD~k---a~~~~~~~l~~~v~ 107 (411)
...+|||+.|-.|. ......+++.|+ ||+- +++.-+.+ -..++..++...+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~~i~i~~ir~i~~~~~ 95 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDF-IIIKPDKKKKSIKIDQIREIIEFLS 95 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTE-EEEETTTSSSSBSHHHHHHHHHHCT
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcce-EEEecccccchhhHHHHHHHHHHHH
Confidence 46678888887654 355555666664 3322 22322222 12333334444443
Q ss_pred ccccccccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccCC
Q 015224 108 NEPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (411)
Q Consensus 108 ~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (411)
..|.. ....|.++.+ .-.|-....+++...|++++ .-+||+++.+
T Consensus 96 ~~~~~-~~~KviiI~~-------ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 96 LSPSE-GKYKVIIIDE-------ADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SS-TT-SSSEEEEEET-------GGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred HHHhc-CCceEEEeeh-------HhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 33322 1234444443 33556666666666777776 6677777643
No 73
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=28.46 E-value=3.1e+02 Score=21.89 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=49.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccHHHHH
Q 015224 61 LLSASKGDTIKLKRALLALYHPG--NHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTMLATT 138 (411)
Q Consensus 61 LI~~hk~d~~~l~rLl~aLy~p~--n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~V~At 138 (411)
+|.+++ ..+.+..+++++.... +.-++-+|-.+++.....+....+. ..++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEE-----EecCCCChHHHH
Confidence 466666 6899999999986443 4445567777666555444433211 0112211 222333444444
Q ss_pred HHHHHHHHhCCCCcEEEEccCCccccc
Q 015224 139 LHAIAMLLRCCKWDWFINLSASDYPLV 165 (411)
Q Consensus 139 L~~~~~lL~~~~wdyfi~LSgsDyPLk 165 (411)
-.++..+ ..||++.+.+.+.+..
T Consensus 70 ~~~~~~~----~~d~v~~~d~D~~~~~ 92 (156)
T cd00761 70 NAGLKAA----RGEYILFLDADDLLLP 92 (156)
T ss_pred HHHHHHh----cCCEEEEECCCCccCc
Confidence 4433333 5789999988777544
No 74
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=23.93 E-value=7.3e+02 Score=24.71 Aligned_cols=107 Identities=7% Similarity=0.035 Sum_probs=61.3
Q ss_pred CCCeEEEEEEecCCCHHHHHHHHHHHc-----CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeee
Q 015224 54 YPVTFAYLLSASKGDTIKLKRALLALY-----HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (411)
Q Consensus 54 ~~~kiAyLI~~hk~d~~~l~rLl~aLy-----~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 128 (411)
+.+++..+|-+++ +.+.+.++++.+. .+.+.=+|=+|-.|++.-.+.+++..+. ...+|..+..
T Consensus 4 ~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~----- 72 (325)
T PRK10714 4 PIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILL----- 72 (325)
T ss_pred CCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEe-----
Confidence 3467888999998 6677777766553 1223335667777776655555443221 1234543311
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHHHHhcC
Q 015224 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIEAFSDL 177 (411)
Q Consensus 129 Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~~fs~~ 177 (411)
-.++..-.|...+++ .+.-||++.+.+.+- .+.++|.+.+...
T Consensus 73 ~~n~G~~~A~~~G~~----~A~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 73 NRNYGQHSAIMAGFS----HVTGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred CCCCCHHHHHHHHHH----hCCCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 123344444444443 334699999988776 4667777766543
No 75
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=23.91 E-value=1.1e+03 Score=27.40 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCCCeEEEEEEecCCCHHHHHHHHHHH---cCCCC-EEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeee
Q 015224 53 SYPVTFAYLLSASKGDTIKLKRALLAL---YHPGN-HYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVT 128 (411)
Q Consensus 53 ~~~~kiAyLI~~hk~d~~~l~rLl~aL---y~p~n-~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~ 128 (411)
+..|+++.+|-+|+.+.+.+++.+.+. +.|.. .=++-+|-.+.++.. ++.+ + .+|+++.....
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~-~la~---------~-~~v~yI~R~~n-- 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFR-QFAQ---------E-VGVKYIARPTH-- 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHH-HHHH---------H-CCcEEEEeCCC--
Confidence 345789999999995445666666654 44543 224556665655432 3321 1 25666642211
Q ss_pred ecCccHHHHHHHHHHHHHhCCCCcEEEEccCCcccccCh-hhHHHHHhcCCCCcceEe
Q 015224 129 YRGPTMLATTLHAIAMLLRCCKWDWFINLSASDYPLVTQ-DDLIEAFSDLPRDLNFIQ 185 (411)
Q Consensus 129 Wgg~S~V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~-~~i~~~fs~~~~~~nFIe 185 (411)
-+| -=.++..+++...-||++.+.+.+.|-..- +.+..+|.+ +.+.-++.
T Consensus 324 ~~g------KAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQ 374 (852)
T PRK11498 324 EHA------KAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQ 374 (852)
T ss_pred Ccc------hHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEE
Confidence 111 111233455555689999999999986443 333444432 33344443
No 76
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=22.47 E-value=4.7e+02 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHhCCC-CcEEEEccCC
Q 015224 133 TMLATTLHAIAMLLRCCK-WDWFINLSAS 160 (411)
Q Consensus 133 S~V~AtL~~~~~lL~~~~-wdyfi~LSgs 160 (411)
.|-.+.-+++-..|+++. .-+||+++.+
T Consensus 124 ~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 124 AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 444555555555666666 7777777754
No 77
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=22.02 E-value=1.4e+02 Score=27.71 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCCCeEEEEEEecCCCHHHHHHHHHHHcCCCCEEEEEEeCCCC
Q 015224 52 SSYPVTFAYLLSASKGDTIKLKRALLALYHPGNHYLIHMDREAP 95 (411)
Q Consensus 52 ~~~~~kiAyLI~~hk~d~~~l~rLl~aLy~p~n~y~IHvD~ka~ 95 (411)
.+......||+.+|= -+++..++.|...+-..|||+|.=-.
T Consensus 20 les~~~~vflL~~~i---~~ik~ivk~lK~~gK~vfiHvDLv~G 60 (181)
T COG1954 20 LESESQYVFLLTGHI---LNIKEIVKKLKNRGKTVFIHVDLVEG 60 (181)
T ss_pred hcCCCeEEEEEechh---hhHHHHHHHHHhCCcEEEEEeHHhcc
Confidence 345678889888764 68888888888777788999996544
No 78
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.79 E-value=7.8e+02 Score=27.10 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=57.4
Q ss_pred CCeEEEEEEecCCCH--HHHHHHHHHHcC----------------------CCCEEEEEEeCCCC--HHHHHHHHHHhhc
Q 015224 55 PVTFAYLLSASKGDT--IKLKRALLALYH----------------------PGNHYLIHMDREAP--EKEQREIAEFVAN 108 (411)
Q Consensus 55 ~~kiAyLI~~hk~d~--~~l~rLl~aLy~----------------------p~n~y~IHvD~ka~--~~~~~~l~~~v~~ 108 (411)
.+.+|||+.|-.|-. -..+.+.++|+- +.+.-+|-+|+.+. .++..+|...+..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~ 112 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY 112 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh
Confidence 578899999877642 344445555551 12334567788653 5555556666655
Q ss_pred cccccccccEEEeCCceeeeecCccHHHHHHHHHHHHHhCCC-CcEEEEccC
Q 015224 109 EPVFRMVNNVYIVGKPNLVTYRGPTMLATTLHAIAMLLRCCK-WDWFINLSA 159 (411)
Q Consensus 109 ~~~~~~~~NV~vv~~r~~V~Wgg~S~V~AtL~~~~~lL~~~~-wdyfi~LSg 159 (411)
.|.... ..|.++.+....+ ....+++...|++.. .-.||+++.
T Consensus 113 ~P~~~~-~KVvIIDEah~Lt-------~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 113 APAQSR-YRIFIVDEAHMVT-------TAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred hhhcCC-ceEEEEECCCcCC-------HHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 564433 3577777654443 223444445666666 888888874
No 79
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=20.40 E-value=7.3e+02 Score=23.42 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=57.3
Q ss_pred EEEEEEecCCC-HHHHHHHHHHHc--CCCCEEEEEEeCCCCHHHHHHHHHHhhccccccccccEEEeCCceeeeecCccH
Q 015224 58 FAYLLSASKGD-TIKLKRALLALY--HPGNHYLIHMDREAPEKEQREIAEFVANEPVFRMVNNVYIVGKPNLVTYRGPTM 134 (411)
Q Consensus 58 iAyLI~~hk~d-~~~l~rLl~aLy--~p~n~y~IHvD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~r~~V~Wgg~S~ 134 (411)
.||+-++...+ ...+.-++..|- +++..++|+++..-+.+.++.|++... ..-.|..+.........+-..
T Consensus 1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~------~~~~v~~i~~~~~~~~~~~~~ 74 (240)
T cd02537 1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGW------IVREVEPIDPPDSANLLKRPR 74 (240)
T ss_pred CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCC------EEEecCccCCcchhhhccchH
Confidence 37776665422 455555666553 345566778887777777777775320 111112222111110111122
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEccCCcccccChhhHHH
Q 015224 135 LATTLHAIAMLLRCCKWDWFINLSASDYPLVTQDDLIE 172 (411)
Q Consensus 135 V~AtL~~~~~lL~~~~wdyfi~LSgsDyPLkt~~~i~~ 172 (411)
..++..=+. +.+...+|.++.|.+.-+.+.+.++|.+
T Consensus 75 ~~~~~~kl~-~~~l~~~drvlylD~D~~v~~~i~~Lf~ 111 (240)
T cd02537 75 FKDTYTKLR-LWNLTEYDKVVFLDADTLVLRNIDELFD 111 (240)
T ss_pred HHHHhHHHH-hccccccceEEEEeCCeeEccCHHHHhC
Confidence 222222111 2223359999999999999998888744
Done!