BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015225
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/369 (19%), Positives = 135/369 (36%), Gaps = 63/369 (17%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A I+ G G R P++ PK P+ +P+I++ I ++ + I +I + +E
Sbjct: 3 AFILAAGS--GERLEPITHTRPKAFVPILSKPLIEYQIEYLRKC-GIRDITVIVSSKNKE 59
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLY--YFRDMIMEENPSHIILLNCDVCCSFP 123
+ +LK ++D G+ + F D + ++C
Sbjct: 60 Y------FEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIIT 113
Query: 124 LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCG 183
L + +I V + +G L+ D N L EKPE S+LIN G
Sbjct: 114 LKE-------------NAIIGVKVSNPKDYGVLVLD-NQNNLSKIIEKPEIPPSNLINAG 159
Query: 184 VYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243
+Y D FT + D+ +I + E D ++ +A
Sbjct: 160 IYKLNSDIFTYL--------DKISISERGELEL----------------TDAINLMAKDH 195
Query: 244 QLYTYETMDFWEQIKTPGMSLKCSSLYLALF-------------KITSPQLLASGNGITS 290
++ E +W I P + + L KI ++ I S
Sbjct: 196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKS 255
Query: 291 AT-IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349
T I G VYI +++ P + + P + ++GA V + ++++ +I + V +S
Sbjct: 256 GTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDS 315
Query: 350 IIGWKSSLG 358
+I + G
Sbjct: 316 VIAEDVNFG 324
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 10/191 (5%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+I+ GG G+R P++ T K L P+ PMI H + K+ ++ I +I E
Sbjct: 27 GIILAGGT--GSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQC-DITDIMIITGKEHMG 83
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ E V Y +DK G A L D + N +++L ++ P
Sbjct: 84 DVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFV--GNDRMVVILGDNIFSDDIRP 141
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
+ E + G +L S + +FG +A+ ++++ EKP+ S G+Y
Sbjct: 142 YVEEFTNQKEGAKVLL---QSVDDPERFG--VANIQNRKIIEIEEKPKEPKSSYAVTGIY 196
Query: 186 VFTPDFFTAIQ 196
++ F+ I+
Sbjct: 197 LYDSKVFSYIK 207
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREF 66
+++ GP GTR R +TPK L LAG+ M+ H + A ++ I ++G ++ +
Sbjct: 12 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLG-HDHQRI 65
Query: 67 ALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFPL 124
A V +++ L + +D+P G+ + + ++ ++++ + D + + L
Sbjct: 66 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 125
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDL----I 180
DL+ H+ T+L + + +G ++ + E++ E+ + S +
Sbjct: 126 ADLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREV 182
Query: 181 NCGVYVF 187
N GVY F
Sbjct: 183 NAGVYAF 189
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREF 66
+++ GP GTR R +TPK L LAG+ M+ H + A ++ I ++G ++ +
Sbjct: 16 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLG-HDHQRI 69
Query: 67 ALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFPL 124
A V +++ L + +D+P G+ + + ++ ++++ + D + + L
Sbjct: 70 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 129
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDL----I 180
DL+ H+ T+L + + +G ++ + E++ E+ + S +
Sbjct: 130 ADLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREV 186
Query: 181 NCGVYVF 187
N GVY F
Sbjct: 187 NAGVYAF 193
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREF 66
+++ GP GTR R +TPK L LAG+ M+ H + A ++ I ++G ++ +
Sbjct: 10 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLG-HDHQRI 63
Query: 67 ALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFPL 124
A V +++ L + +D+P G+ + + ++ ++++ + D + + L
Sbjct: 64 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 123
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDL----I 180
DL+ H+ T+L + + +G ++ + E++ E+ + S +
Sbjct: 124 ADLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREV 180
Query: 181 NCGVYVF 187
N GVY F
Sbjct: 181 NAGVYAF 187
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREF 66
+++ GP GTR R +TPK L LAG+ M+ H + A ++ I ++G ++ +
Sbjct: 18 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLG-HDHQRI 71
Query: 67 ALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFPL 124
A V +++ L + +D+P G+ + + ++ ++++ + D + + L
Sbjct: 72 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 131
Query: 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDL----I 180
DL+ H+ T+L + + +G ++ + E++ E+ + S +
Sbjct: 132 ADLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREV 188
Query: 181 NCGVYVF 187
N GVY F
Sbjct: 189 NAGVYAF 195
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 152/383 (39%), Gaps = 57/383 (14%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+ G KGTR + + PK L +AG M++H + I + ++G E
Sbjct: 5 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAEL- 58
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFP 123
+ L ++ + + G+ G + I+E H +++ D +
Sbjct: 59 -------VEEVLAEQTEFVTQSEQLGT-GHAVMMTEPILEGLSGHTLVIAGDTPLITGES 110
Query: 124 LPDLLEAHKRYGGMGTMLVIKVSAESAHQFG-ELIADPNTKELLHYTEKPET--FVSDL- 179
L +L++ H + + T+L +AE+ + FG I + E+L E+ + F +
Sbjct: 111 LKNLIDFHINHKNVATIL----TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIK 166
Query: 180 -INCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQS-ATRTLPVDFVRLDQDILS 237
IN G YVF + FEAL++ T ++ D +
Sbjct: 167 EINTGTYVFDNERL---------------------FEALKNINTNNAQGEYYITDVIGIF 205
Query: 238 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDV 297
G+K + Y DF E + ++ + +I ++ NG++
Sbjct: 206 RETGEK-VGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMV---NGVSFVNPEA-T 260
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKS-- 355
YI ++ P +I NV + ++GA L + + D I AV+ NS+I S
Sbjct: 261 YIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVA 320
Query: 356 ---SLGRWARVQGNGDYNAKLGI 375
++G +A ++ N A++ I
Sbjct: 321 DGVTVGPYAHIRPNSSLGAQVHI 343
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
Query: 16 GTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG---------FYEEREF 66
GTRF P + PK + P+ +P+IQ+ + IF+ G F E
Sbjct: 25 GTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYEL 84
Query: 67 ALYVSSISNELKV---------PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD 117
+++ L V + Y+++ +P G ++ RD++ +E +LL D
Sbjct: 85 EATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDE--PFAVLLPDD 142
Query: 118 VCCSFP--LPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK-----ELLHYTE 170
P L +++A+ + GG + +V + H++G I P T+ E+ E
Sbjct: 143 FMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYG--IITPGTQDGVLTEVKGLVE 199
Query: 171 KPE--TFVSDLINCGVYVFTPDFFTAIQ 196
KP T S+L G Y+ P+ ++
Sbjct: 200 KPAPGTAPSNLSVIGRYILQPEVMRILE 227
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 152/383 (39%), Gaps = 57/383 (14%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+ G KGTR + + PK L +AG M++H + I + ++G E
Sbjct: 14 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAEL- 67
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFP 123
+ L ++ + + G+ G + I+E H +++ D +
Sbjct: 68 -------VEEVLAGQTEFVTQSEQLGT-GHAVMMTEPILEGLSGHTLVIAGDTPLITGES 119
Query: 124 LPDLLEAHKRYGGMGTMLVIKVSAESAHQFG-ELIADPNTKELLHYTEKPET--FVSDL- 179
L +L++ H + + T+L +AE+ + FG I + E+L E+ + F +
Sbjct: 120 LKNLIDFHINHKNVATIL----TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIK 175
Query: 180 -INCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQS-ATRTLPVDFVRLDQDILS 237
IN G YVF + FEAL++ T ++ D +
Sbjct: 176 EINTGTYVFDNERL---------------------FEALKNINTNNAQGEYYITDVIGIF 214
Query: 238 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDV 297
G+K + Y DF E + ++ + +I ++ NG++
Sbjct: 215 RETGEK-VGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMV---NGVSFVNPEA-T 269
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKS-- 355
YI ++ P +I NV + ++GA L + + D I AV+ NS+I S
Sbjct: 270 YIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVA 329
Query: 356 ---SLGRWARVQGNGDYNAKLGI 375
++G +A ++ N A++ I
Sbjct: 330 DGVTVGPYAHIRPNSSLGAQVHI 352
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
+V A+I+ G GTR RPL+ NTPK L + +P+I++ I K I ++G+ +
Sbjct: 25 RVKAIILAAGL--GTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 82
Query: 63 ER 64
E+
Sbjct: 83 EQ 84
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE 62
+V A+I+ G GTR RPL+ NTPK L + +P+I++ I K I ++G+ +
Sbjct: 25 RVKAIILAAGL--GTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 82
Query: 63 ER 64
E+
Sbjct: 83 EQ 84
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 8/182 (4%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+I+ GG GTR P++ K L P+ +P I +P+S + + +I +I E++
Sbjct: 6 GIILAGG--SGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLX-LAGIREILIITTPEDKG 62
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLP 125
+ + +E + + Y ++ P G A + + + PS ++L + P
Sbjct: 63 YFQRLLGDGSEFGIQLEYAEQPSPDGLAQA-FIIGETFLNGEPSCLVLGDNIFFGQGFSP 121
Query: 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVY 185
L R G V +FG + D N + + EKP+ S+ G+Y
Sbjct: 122 KLRHVAARTEG---ATVFGYQVXDPERFGVVEFDDNFR-AISLEEKPKQPKSNWAVTGLY 177
Query: 186 VF 187
+
Sbjct: 178 FY 179
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 158/373 (42%), Gaps = 61/373 (16%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
AVI+ G KGTR + PK L +AG+PM++H I ++ + + G +
Sbjct: 8 AVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGD-- 60
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLY----YFRDMIMEENPSHIILLNCD--VC 119
L + ++NE V ++ + + G+A + +F+D +I++L D +
Sbjct: 61 --LMRTHLANE---QVNWVLQTEQLGTAHAVQQAAPFFKD------NENIVVLYGDAPLI 109
Query: 120 CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDL 179
L L+EA G + ++ V+ ++ +G +I + ++ E+ + L
Sbjct: 110 TKETLEKLIEAKPENG----IALLTVNLDNPTGYGRIIRENGN--VVAIVEQKDANAEQL 163
Query: 180 ----INCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRL-DQD 234
+N GV V F + + +V + A T D + L +QD
Sbjct: 164 NIKEVNTGVMVSDGASF------------KKWLARVGNNNAQGEYYLT---DLIALANQD 208
Query: 235 ILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSAT-- 292
Q+ + D E ++ L+ ++L + +LL G I
Sbjct: 209 -------NCQVVAVQATDVME-VEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARF 260
Query: 293 -IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSII 351
+ G + ++ I NV + V++G G L + ++ +DVEIK +V+ +SI+
Sbjct: 261 DLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIV 320
Query: 352 GWKSSLGRWARVQ 364
G K+++G ++R++
Sbjct: 321 GEKAAIGPFSRLR 333
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 16 GTRFRPLSFNTPKPLFPLAGQPMIQHPI-----SACK-------RIPNLAQIFLIGFYE- 62
GTRF P++ PK + P+ +P+IQ+ + + C+ R + + YE
Sbjct: 13 GTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEI 72
Query: 63 -------EREFALYVSSISNEL-KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114
+E AL SI N + K Y+++ + G + +I E P +IL
Sbjct: 73 EHQIQGTNKENAL--KSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNE-PFAVILA 129
Query: 115 NCDVCCSFPLPDLLEA----HKRYGGMGTMLVIKVSAESAHQFGELIA---DPNTKELLH 167
+ D+C S P +L+ +++Y + + +V+ E ++G + + E+
Sbjct: 130 D-DLCISHDHPSVLKQMTSLYQKY-QCSIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKD 187
Query: 168 YTEKP--ETFVSDLINCGVYVFTPDFF 192
EKP E S+L G Y+ TPD F
Sbjct: 188 MVEKPNQEDAPSNLAVIGRYILTPDIF 214
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/383 (20%), Positives = 151/383 (39%), Gaps = 57/383 (14%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
A+I+ G KGTR + + PK L +AG M++H + I + ++G E
Sbjct: 5 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAEL- 58
Query: 66 FALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCCSFP 123
+ L ++ + + G+ G + I+E H +++ D +
Sbjct: 59 -------VEEVLAGQTEFVTQSEQLGT-GHAVMMTEPILEGLSGHTLVIAGDTPLITGES 110
Query: 124 LPDLLEAHKRYGGMGTMLVIKVSAESAHQFG-ELIADPNTKELLHYTEKPET--FVSDL- 179
L +L++ H + + T+L +AE+ + FG I + E+L E+ + F +
Sbjct: 111 LKNLIDFHINHKNVATIL----TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIK 166
Query: 180 -INCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQS-ATRTLPVDFVRLDQDILS 237
IN G YVF + FEAL++ T ++ D +
Sbjct: 167 EINTGTYVFDNERL---------------------FEALKNINTNNAQGEYYITDVIGIF 205
Query: 238 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDV 297
G+K + Y DF E + ++ + +I ++ NG++
Sbjct: 206 RETGEK-VGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMV---NGVSFVNPEA-T 260
Query: 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSS- 356
YI ++ +I NV++ ++GA L + + D I AV+ NS+I S
Sbjct: 261 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVA 320
Query: 357 ----LGRWARVQGNGDYNAKLGI 375
+G +A ++ N A++ I
Sbjct: 321 DGVIVGPYAHIRPNSSLGAQVHI 343
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 296 DVYIHPSAKVHPTA------KIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN 348
+V IHPSA VHP A +GP +I ++V++G G +L S V + E+ E+ V++
Sbjct: 7 EVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMT 66
Query: 349 SII 351
+
Sbjct: 67 GAV 69
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ K L P+ +PMI +P+S + + I +I
Sbjct: 1 MKMRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLI 180
LP L+EA T+ V+ ++G + D N + EKP S+
Sbjct: 116 GHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDKNGTA-ISLEEKPLEPKSNYA 172
Query: 181 NCGVYVFTPD 190
G+Y + D
Sbjct: 173 VTGLYFYDND 182
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ K L P+ +PMI +P+S + + I +I
Sbjct: 1 MKMRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLI 180
LP L+EA T+ V+ ++G + D N + EKP S+
Sbjct: 116 GHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDKNGTA-ISLEEKPLEPKSNYA 172
Query: 181 NCGVYVFTPD 190
G+Y + D
Sbjct: 173 VTGLYFYDND 182
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ K L P+ +PMI +P+S + + I +I
Sbjct: 1 MKMRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLI 180
LP L+EA T+ V+ ++G + D N + EKP S+
Sbjct: 116 GHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDKNGTA-ISLEEKPLEPKSNYA 172
Query: 181 NCGVYVFTPD 190
G+Y + D
Sbjct: 173 VTGLYFYDND 182
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 8/190 (4%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ K L P+ +PMI +P+S + + I +I
Sbjct: 1 MKMRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPETFVSDLI 180
LP L+EA T+ V+ ++G + D N + EKP S+
Sbjct: 116 GHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDKNGTA-ISLEEKPLEPKSNYA 172
Query: 181 NCGVYVFTPD 190
G+Y + D
Sbjct: 173 VTGLYFYDND 182
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEERE 65
+++ GG GTR P++ K L P+ +PMI +P+S + + I +I R+
Sbjct: 6 GIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLM-LAGIRDILIIS--TPRD 60
Query: 66 FALYVSSISNELKVPVR--YLKEDKPHGSAGGLYYFRDMI 103
LY + + + VR Y +++P G A +D I
Sbjct: 61 LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFI 100
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRI 49
VI+ G KGTR + + PK L PLAG+PM+QH I A ++
Sbjct: 9 VILAAG--KGTR---MYSDLPKVLHPLAGKPMVQHVIDAAMKL 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
+V + VR+G G L +C++ DD EI V+ ++ + ++G +AR++
Sbjct: 283 HVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLR 333
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRI 49
VI+ G KGTR + + PK L PLAG+PM+QH I A ++
Sbjct: 12 VILAAG--KGTR---MYSDLPKVLHPLAGKPMVQHVIDAAMKL 49
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
+V + VR+G G L +C++ DD EI V+ ++ + ++G +AR++
Sbjct: 286 HVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLR 336
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 48/142 (33%)
Query: 299 IHPSAKVHPTAKIGPNVSISANV------------------------RVGAGVRLISCIV 334
I PSA + TAK+G NVSI AN ++GAG RL + +
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVT 159
Query: 335 L-DDVEIKENAVVLNSII------GWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE-- 385
+ +++I +N ++ + + G+ + G W ++ ++G I+G+ V +
Sbjct: 160 IYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKI-------PQIGRVIIGDRVEIGAC 212
Query: 386 --------DEVVVINSIVLPNK 399
D+ ++ N +++ N+
Sbjct: 213 TTIDRGALDDTIIGNGVIIDNQ 234
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ + L P+ +PMI +P+S + + I +I
Sbjct: 1 MKTRKGIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G+A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEA 130
LP L+EA
Sbjct: 116 GHDLPKLMEA 125
>pdb|1W77|A Chain A, 2c-methyl-d-erythritol 4-phosphate Cytidylyltransferase
(ispd) From Arabidopsis Thaliana
Length = 228
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG- 59
MEK V+VI++ G +G R + + PK PL GQP+ + R+P + +I ++
Sbjct: 1 MEKSVSVILLAG-GQGKRMK---MSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCD 56
Query: 60 -FYEEREFALYVSSISNELK 78
F+ + F Y SI +L+
Sbjct: 57 PFFRDI-FEEYEESIDVDLR 75
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ K L P+ +PMI +P+S + + I +I
Sbjct: 1 MKTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEA 130
LP L+EA
Sbjct: 116 GHDLPKLMEA 125
>pdb|2YC3|A Chain A, Inhibitors Of The Herbicidal Target Ispd
pdb|2YC5|A Chain A, Inhibitors Of The Herbicidal Target Ispd
Length = 228
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQI----- 55
MEK V+VI++ G +G R + + PK PL GQP+ + R+P + +I
Sbjct: 1 MEKSVSVILLAG-GQGKRMK---MSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCD 56
Query: 56 -FLIGFYEEREFALYV 70
F +EE E ++ V
Sbjct: 57 PFFRDIFEEYEESIDV 72
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ K L P+ +PMI +P+S + + I +I
Sbjct: 1 MKTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEA 130
LP L+EA
Sbjct: 116 GHDLPKLMEA 125
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 17 TRFRPLSFNTPKPLFPL-AGQPMIQHPISACKRIPNLAQIFLIGFYE--------EREFA 67
TR PL+ KP PL A +I P+S C N+++I+++ + R +A
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYA 90
Query: 68 LYVSSISNELKVPVRYLKE-----DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF 122
+ NE V V ++ D G+A + + + E ++L D
Sbjct: 91 SNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRM 150
Query: 123 PLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPE 173
++AH+ T+ + + + A FG + D + ++ + EKP+
Sbjct: 151 DYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR-IIEFAEKPQ 200
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ + L P+ +PMI +P+S + + I +I
Sbjct: 1 MKTRKGIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEA 130
LP L+EA
Sbjct: 116 GHDLPKLMEA 125
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ + L P+ +PMI +P+S + + I +I
Sbjct: 1 MKTRKGIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEA 130
LP L+EA
Sbjct: 116 GHDLPKLMEA 125
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGF 60
M+ +I+ GG GTR P++ + L P+ +PMI +P+S + + I +I
Sbjct: 1 MKTRKGIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTL-MLAGIRDILIIST 57
Query: 61 YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC 120
++ + ++ + ++Y + P G A + I ++ + ++L ++
Sbjct: 58 PQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFY 115
Query: 121 SFPLPDLLEA 130
LP L+EA
Sbjct: 116 GHDLPKLMEA 125
>pdb|2YCM|A Chain A, Inhibitors Of Herbicidal Target Ispd
Length = 227
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQI------ 55
EK V+VI++ G +G R + + PK PL GQP+ + R+P + +I
Sbjct: 1 EKSVSVILLAG-GQGKRMK---MSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDP 56
Query: 56 FLIGFYEEREFALYV 70
F +EE E ++ V
Sbjct: 57 FFRDIFEEYEESIDV 71
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISAC 46
AVI V G GTR P + PK + PL +P+IQ+ ++ C
Sbjct: 11 AVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNEC 49
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPIS 44
K +I+ GG GTR P + K L P+ +PMI +P+S
Sbjct: 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 41
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPIS 44
K +I+ GG GTR P + K L P+ +PMI +P+S
Sbjct: 12 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 51
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPIS 44
K +I+ GG GTR P + K L P+ +PMI +P+S
Sbjct: 11 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 50
>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|D Chain D, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|E Chain E, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|F Chain F, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E79|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
Length = 357
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 32/122 (26%)
Query: 288 ITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDD---------- 337
I+S I IHPSA + TA IG V I N VG + S LDD
Sbjct: 100 ISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFI 159
Query: 338 ---------------VEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAV 382
V I + V+ G+ G+W R+ A+LG ++G V
Sbjct: 160 DSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRI-------AQLGSVLIGNDV 212
Query: 383 TV 384
+
Sbjct: 213 RI 214
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPIS 44
M + A I+ GG KGTR +S PK PL G+P+I H +
Sbjct: 1 MSLIYAQILAGG--KGTRMGNVSM--PKQFLPLNGKPIIVHTVE 40
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLG 358
I P A++H T ++GP + +NV +GA + S V++ ++ IG + +G
Sbjct: 31 IEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEG----------HTTIGEDNRIG 80
Query: 359 RWARVQG 365
+A V G
Sbjct: 81 HYASVGG 87
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRI 49
VI+ G KGTR + + PK L LAG+ M+QH I A +
Sbjct: 9 VILAAG--KGTR---MYSDLPKVLHTLAGKAMVQHVIDAANEL 46
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWAR 362
I NV++ V++G G + + ++ DD EI VV ++ + ++G +AR
Sbjct: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFAR 331
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPIS 44
K +I+ GG GTR P + K L P+ +P I +P+S
Sbjct: 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPXIYYPLS 41
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 97/266 (36%), Gaps = 33/266 (12%)
Query: 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLI----GFY 61
AVI+ GG GTR + PKP+ + G+P++ H I + + + G+
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWH-IMKMYSVHGIKDFIICCGYKGYV 61
Query: 62 EEREFALYVSSIS--------NELKV------PVRYLKEDKPHGSAGGLYYFRDMIMEEN 107
+ FA Y +S N ++V P D S G R ++
Sbjct: 62 IKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD 121
Query: 108 PSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKELLH 167
+ D + ++ HK +G T+ + +FG L D ++
Sbjct: 122 DEAFLFTYGDGVADLDIKATIDFHKAHGKKATL----TATFPPGRFGAL--DIQAGQVRS 175
Query: 168 YTEKPETFVSDLINCGVYVFTPDFFTAIQGVLT--HREDRANIRQVSSFEALQSATRTLP 225
+ EKP+ +IN G +V P I T +E + Q A + P
Sbjct: 176 FQEKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQP 234
Query: 226 VDFVRLDQDILSPL--AGKKQLYTYE 249
+D +R D+ L L GK T+E
Sbjct: 235 MDTLR-DKVYLEGLWEKGKAPWKTWE 259
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And
Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And
Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 7 VIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLI 58
VI+ G KGTR + + PK L LAG+ M+QH I A + A + L+
Sbjct: 9 VILAAG--KGTR---MYSDLPKVLHTLAGKAMVQHVIDAANEL-GAAHVHLV 54
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
NV++ V++G G + + ++ DD EI VV ++ + ++G +AR++
Sbjct: 283 NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLR 333
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
NV++ V++G G + + ++ DD EI VV ++ + ++G +AR++
Sbjct: 52 NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLR 102
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364
NV++ V++G G + + ++ DD EI VV ++ + ++G +AR++
Sbjct: 58 NVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLR 108
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 91 GSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESA 150
G+A +Y D+I P + ++L D L+ H G T+ ++V A
Sbjct: 109 GTADAVYQNIDIIEPYAPEYXVILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEA 168
Query: 151 HQFGELIADPNTK-ELLHYTEKP---------ETFVSDLINCGVYVFTPDFF 192
FG + N K E++ + EKP E F L + G+YVF F
Sbjct: 169 TGFG--VXHVNEKDEIIDFIEKPADPPGIPGNEGFA--LASXGIYVFHTKFL 216
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 37/153 (24%)
Query: 290 SATIAGDVYIHPSAKV------HPTAKIGPNVSISANVRVGA------GVRLISCIVL-- 335
+A +A D + PSA V A+IG VSI A+ +GA G L + L
Sbjct: 125 TAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYH 184
Query: 336 -----DDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI-----LGEAVTVE 385
V I+ AV+ G+ + G W ++ G G+TI +G T++
Sbjct: 185 DVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIG------GVTIGDDVEIGANTTID 238
Query: 386 ----DEVVVINSIVLPNKVL---NVSVQEEIIL 411
+ ++ N + L N+++ NV + + +
Sbjct: 239 RGALSDTLIGNGVKLDNQIMIAHNVQIGDHTAM 271
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 276 ITSPQLLASGNGITSAT-IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIV 334
+T+ L G G ++ I I PSA + +IGP I V +GAG +L S +V
Sbjct: 21 MTTENLYFQGAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVV 80
Query: 335 L 335
+
Sbjct: 81 V 81
>pdb|3BSS|A Chain A, Pgld From Campylobacter Jejuni, Nctc 11168, With Native
Substrate
pdb|3BSW|A Chain A, Pgld-Citrate Complex, From Campylobacter Jejuni Nctc 11168
pdb|3BSY|A Chain A, Pgld From Campylobacter Jejuni, Nctc 11168, In Complex
With Acetyl Coenzyme A
pdb|3BSY|B Chain B, Pgld From Campylobacter Jejuni, Nctc 11168, In Complex
With Acetyl Coenzyme A
pdb|3BSY|C Chain C, Pgld From Campylobacter Jejuni, Nctc 11168, In Complex
With Acetyl Coenzyme A
Length = 198
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGWKSSLGRWAR 362
+H +A I P SA V AG+ ++ +V++ E V+LN S+I + +G ++
Sbjct: 82 IHKSALISP----SAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSH 137
Query: 363 VQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPN 398
V +G G ++ + INS VLPN
Sbjct: 138 VS--------VGAKCAGNVKIGKNCFLGINSCVLPN 165
>pdb|3BFP|A Chain A, Crystal Structure Of Apo-Pgld From Campylobacter Jejuni
pdb|2VHE|A Chain A, Pgld-Coa Complex: An Acetyl Transferase From Campylobacter
Jejuni
pdb|2VHE|B Chain B, Pgld-Coa Complex: An Acetyl Transferase From Campylobacter
Jejuni
Length = 194
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLN--SIIGWKSSLGRWAR 362
+H +A I P SA V AG+ ++ +V++ E V+LN S+I + +G ++
Sbjct: 78 IHKSALISP----SAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSH 133
Query: 363 VQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPN 398
V +G G ++ + INS VLPN
Sbjct: 134 VS--------VGAKCAGNVKIGKNCFLGINSCVLPN 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,187,478
Number of Sequences: 62578
Number of extensions: 507842
Number of successful extensions: 1213
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 87
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)