Query 015225
Match_columns 411
No_of_seqs 198 out of 2629
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1460 GDP-mannose pyrophosph 100.0 6.2E-65 1.3E-69 444.3 29.7 403 2-411 1-407 (407)
2 KOG1322 GDP-mannose pyrophosph 100.0 5.4E-57 1.2E-61 401.1 27.5 348 2-397 8-356 (371)
3 COG1208 GCD1 Nucleoside-diphos 100.0 5.4E-55 1.2E-59 417.1 35.4 319 3-359 1-324 (358)
4 PRK05293 glgC glucose-1-phosph 100.0 1.3E-51 2.8E-56 401.5 33.2 355 1-404 1-376 (380)
5 PRK00844 glgC glucose-1-phosph 100.0 1.3E-50 2.8E-55 396.4 34.4 336 1-365 3-382 (407)
6 COG0448 GlgC ADP-glucose pyrop 100.0 1.2E-50 2.7E-55 374.3 29.7 336 1-366 3-363 (393)
7 PRK02862 glgC glucose-1-phosph 100.0 8.4E-49 1.8E-53 385.4 33.1 331 1-366 1-395 (429)
8 PLN02241 glucose-1-phosphate a 100.0 1.4E-48 3E-53 384.9 34.2 330 1-366 1-402 (436)
9 TIGR01208 rmlA_long glucose-1- 100.0 2.6E-48 5.6E-53 374.5 34.3 345 5-402 1-352 (353)
10 PRK00725 glgC glucose-1-phosph 100.0 1E-47 2.3E-52 377.2 32.8 337 1-366 13-395 (425)
11 TIGR02092 glgD glucose-1-phosp 100.0 7.4E-48 1.6E-52 373.5 30.0 346 2-398 1-361 (369)
12 COG1207 GlmU N-acetylglucosami 100.0 1.7E-47 3.8E-52 352.7 27.3 352 2-402 1-365 (460)
13 TIGR02091 glgC glucose-1-phosp 100.0 7E-47 1.5E-51 365.9 32.7 340 6-391 1-360 (361)
14 PRK14355 glmU bifunctional N-a 100.0 3.9E-45 8.4E-50 364.1 32.4 345 1-396 1-359 (459)
15 PRK14352 glmU bifunctional N-a 100.0 6.9E-44 1.5E-48 356.9 35.2 323 3-366 4-340 (482)
16 PRK14358 glmU bifunctional N-a 100.0 1.6E-43 3.5E-48 352.8 33.4 338 2-389 6-354 (481)
17 PRK14356 glmU bifunctional N-a 100.0 2.5E-43 5.5E-48 351.4 32.7 349 1-401 2-365 (456)
18 KOG1461 Translation initiation 100.0 2.4E-43 5.2E-48 337.7 29.6 364 3-406 24-416 (673)
19 KOG1462 Translation initiation 100.0 3E-43 6.6E-48 319.2 21.4 362 1-403 7-413 (433)
20 TIGR01173 glmU UDP-N-acetylglu 100.0 4.7E-42 1E-46 342.3 31.7 343 4-399 1-355 (451)
21 PRK14353 glmU bifunctional N-a 100.0 2.3E-41 5E-46 336.4 35.2 370 1-409 3-421 (446)
22 PRK09451 glmU bifunctional N-a 100.0 1.4E-41 3E-46 338.5 29.5 315 1-366 3-335 (456)
23 COG1209 RfbA dTDP-glucose pyro 100.0 3.4E-42 7.4E-47 301.5 19.9 236 4-273 1-238 (286)
24 PRK14354 glmU bifunctional N-a 100.0 9.4E-41 2E-45 333.3 32.2 346 2-401 1-360 (458)
25 PRK14359 glmU bifunctional N-a 100.0 3.7E-40 8.1E-45 326.5 33.3 360 3-409 2-408 (430)
26 PRK14357 glmU bifunctional N-a 100.0 1.1E-39 2.5E-44 324.5 31.7 326 4-390 1-339 (448)
27 PRK14360 glmU bifunctional N-a 100.0 1.6E-38 3.5E-43 316.5 32.9 344 4-402 2-358 (450)
28 TIGR01105 galF UTP-glucose-1-p 100.0 1E-38 2.2E-43 297.1 22.0 239 1-271 1-277 (297)
29 cd06428 M1P_guanylylT_A_like_N 100.0 3.1E-37 6.8E-42 284.4 22.4 256 6-269 1-256 (257)
30 cd06425 M1P_guanylylT_B_like_N 100.0 2.9E-37 6.2E-42 280.6 21.6 233 4-271 1-233 (233)
31 PRK15480 glucose-1-phosphate t 100.0 4E-37 8.7E-42 285.7 22.5 238 1-272 1-242 (292)
32 PRK10122 GalU regulator GalF; 100.0 7.6E-37 1.7E-41 285.3 22.6 238 1-270 1-276 (297)
33 PF00483 NTP_transferase: Nucl 100.0 2.2E-36 4.8E-41 277.6 19.9 238 5-272 1-247 (248)
34 TIGR01207 rmlA glucose-1-phosp 100.0 1.3E-35 2.8E-40 275.4 20.8 234 5-272 1-238 (286)
35 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.6E-35 3.6E-40 270.3 21.1 233 4-270 1-237 (240)
36 TIGR02623 G1P_cyt_trans glucos 100.0 4.9E-34 1.1E-38 262.0 20.8 226 5-272 1-246 (254)
37 cd04189 G1P_TT_long G1P_TT_lon 100.0 9.7E-34 2.1E-38 258.1 22.3 234 4-272 1-235 (236)
38 PRK13389 UTP--glucose-1-phosph 100.0 1E-33 2.2E-38 264.7 21.6 234 3-270 8-279 (302)
39 cd06422 NTP_transferase_like_1 100.0 1.7E-33 3.8E-38 253.8 19.7 218 5-266 1-221 (221)
40 cd02541 UGPase_prokaryotic Pro 100.0 2.4E-33 5.2E-38 260.1 20.7 237 4-271 1-265 (267)
41 TIGR01099 galU UTP-glucose-1-p 100.0 3.1E-33 6.6E-38 258.5 20.7 232 4-266 1-260 (260)
42 cd06915 NTP_transferase_WcbM_l 100.0 2.3E-32 4.9E-37 246.8 21.1 222 6-266 1-222 (223)
43 cd06426 NTP_transferase_like_2 100.0 6E-32 1.3E-36 243.6 20.6 219 6-267 1-220 (220)
44 cd02524 G1P_cytidylyltransfera 100.0 6.5E-32 1.4E-36 248.3 20.6 225 6-270 1-245 (253)
45 cd04181 NTP_transferase NTP_tr 100.0 1.3E-31 2.8E-36 240.9 21.2 217 6-258 1-217 (217)
46 COG1210 GalU UDP-glucose pyrop 100.0 1E-31 2.3E-36 235.7 18.1 243 1-274 2-273 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 4E-29 8.6E-34 224.4 17.2 181 4-192 1-217 (217)
48 cd02523 PC_cytidylyltransferas 100.0 2.6E-28 5.6E-33 221.3 16.7 226 6-267 1-229 (229)
49 cd02508 ADP_Glucose_PP ADP-glu 100.0 6.6E-28 1.4E-32 213.8 16.9 187 6-257 1-200 (200)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 5.4E-27 1.2E-31 212.9 20.0 223 6-263 1-230 (231)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 1.5E-25 3.2E-30 207.7 20.0 247 4-262 1-273 (274)
52 cd02507 eIF-2B_gamma_N_like Th 99.9 4.9E-26 1.1E-30 204.0 15.9 182 4-192 1-216 (216)
53 cd04198 eIF-2B_gamma_N The N-t 99.9 6.1E-26 1.3E-30 203.2 16.1 182 4-192 1-214 (214)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.2E-24 2.5E-29 197.3 19.5 218 6-262 1-228 (229)
55 COG1213 Predicted sugar nucleo 99.9 1.2E-24 2.6E-29 188.0 14.9 230 1-274 1-232 (239)
56 PRK05450 3-deoxy-manno-octulos 99.9 2.2E-23 4.9E-28 190.9 19.0 226 3-270 2-244 (245)
57 TIGR01479 GMP_PMI mannose-1-ph 99.9 2.3E-23 5E-28 206.3 20.1 252 4-267 1-281 (468)
58 cd02517 CMP-KDO-Synthetase CMP 99.9 4.5E-23 9.8E-28 188.1 18.7 220 3-268 1-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 7.4E-22 1.6E-26 180.0 17.8 221 3-268 2-236 (238)
60 COG4750 LicC CTP:phosphocholin 99.8 3.7E-20 7.9E-25 153.4 12.0 170 4-197 1-170 (231)
61 PRK15460 cpsB mannose-1-phosph 99.8 1.4E-19 3E-24 177.6 15.3 252 3-266 5-289 (478)
62 COG0836 {ManC} Mannose-1-phosp 99.8 7.3E-19 1.6E-23 158.5 17.0 255 3-266 1-281 (333)
63 PLN02917 CMP-KDO synthetase 99.8 3.1E-18 6.8E-23 159.4 17.6 228 3-272 47-289 (293)
64 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 3.9E-18 8.5E-23 152.8 12.2 149 227-391 26-194 (231)
65 TIGR00466 kdsB 3-deoxy-D-manno 99.7 5.2E-15 1.1E-19 134.3 19.3 215 6-263 2-237 (238)
66 cd05636 LbH_G1P_TT_C_like Puta 99.7 2E-15 4.4E-20 129.1 15.1 116 289-404 28-159 (163)
67 PRK09382 ispDF bifunctional 2- 99.7 1.5E-15 3.2E-20 145.7 15.6 207 1-270 3-212 (378)
68 PRK00155 ispD 2-C-methyl-D-ery 99.7 3.4E-15 7.4E-20 135.0 15.6 218 1-270 1-222 (227)
69 cd02513 CMP-NeuAc_Synthase CMP 99.6 8.1E-15 1.7E-19 132.2 17.0 207 3-268 1-221 (223)
70 COG0663 PaaY Carbonic anhydras 99.6 2.6E-15 5.7E-20 125.1 12.4 111 288-407 21-139 (176)
71 cd02516 CDP-ME_synthetase CDP- 99.6 7.9E-15 1.7E-19 131.8 15.1 213 5-265 2-217 (218)
72 cd04745 LbH_paaY_like paaY-lik 99.6 1.2E-14 2.5E-19 123.2 14.2 106 289-403 11-125 (155)
73 TIGR00454 conserved hypothetic 99.6 3.6E-15 7.7E-20 129.5 10.9 125 4-144 1-127 (183)
74 TIGR00453 ispD 2-C-methyl-D-er 99.6 7.9E-15 1.7E-19 131.7 13.5 210 6-268 2-215 (217)
75 TIGR02287 PaaY phenylacetic ac 99.6 9E-15 1.9E-19 127.3 12.5 106 288-402 18-132 (192)
76 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 2.1E-14 4.6E-19 126.4 14.5 104 289-401 8-111 (193)
77 cd05636 LbH_G1P_TT_C_like Puta 99.6 2.7E-14 5.8E-19 122.2 14.6 93 288-390 9-102 (163)
78 PLN02472 uncharacterized prote 99.6 2.1E-14 4.5E-19 129.3 14.0 107 288-403 69-190 (246)
79 PLN02296 carbonate dehydratase 99.6 2.9E-14 6.3E-19 130.1 15.1 107 288-403 62-183 (269)
80 PF12804 NTP_transf_3: MobA-li 99.6 7E-15 1.5E-19 125.5 10.3 120 6-143 1-123 (160)
81 cd04646 LbH_Dynactin_6 Dynacti 99.6 4.3E-14 9.3E-19 120.5 14.3 107 289-404 10-131 (164)
82 PRK00317 mobA molybdopterin-gu 99.6 3.4E-14 7.3E-19 125.2 13.6 111 1-132 1-115 (193)
83 KOG1461 Translation initiation 99.6 7.8E-15 1.7E-19 142.3 9.1 96 290-395 327-423 (673)
84 TIGR03310 matur_ygfJ molybdenu 99.6 5.2E-14 1.1E-18 123.4 13.3 118 6-138 2-122 (188)
85 TIGR03584 PseF pseudaminic aci 99.6 2.7E-13 5.9E-18 121.6 17.8 203 6-268 2-218 (222)
86 TIGR03308 phn_thr-fam phosphon 99.6 9.4E-14 2E-18 122.4 14.3 111 298-409 4-149 (204)
87 PRK13627 carnitine operon prot 99.5 7.6E-14 1.6E-18 121.9 13.4 105 289-402 21-134 (196)
88 cd05824 LbH_M1P_guanylylT_C Ma 99.5 9.7E-14 2.1E-18 103.7 11.3 79 299-386 2-80 (80)
89 cd04650 LbH_FBP Ferripyochelin 99.5 2E-13 4.3E-18 115.3 14.5 104 289-401 11-123 (154)
90 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.4E-13 3.1E-18 125.8 14.0 30 374-403 201-235 (338)
91 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 1.5E-13 3.2E-18 126.1 14.0 118 290-407 23-177 (254)
92 TIGR01852 lipid_A_lpxA acyl-[a 99.5 1E-13 2.2E-18 127.1 12.9 110 290-408 40-177 (254)
93 PRK13627 carnitine operon prot 99.5 1.8E-13 3.9E-18 119.5 13.7 100 296-405 10-125 (196)
94 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 1.1E-13 2.4E-18 103.6 10.7 79 299-388 2-80 (81)
95 cd03356 LbH_G1P_AT_C_like Left 99.5 1.2E-13 2.6E-18 103.0 10.5 79 298-386 1-79 (79)
96 PRK05289 UDP-N-acetylglucosami 99.5 8.6E-14 1.9E-18 127.9 11.2 120 290-409 26-182 (262)
97 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 1.5E-13 3.4E-18 126.0 12.8 77 315-401 103-181 (254)
98 cd04745 LbH_paaY_like paaY-lik 99.5 2.1E-13 4.6E-18 115.5 12.7 95 299-403 3-113 (155)
99 cd02503 MobA MobA catalyzes th 99.5 2.2E-13 4.8E-18 118.6 13.0 106 4-131 1-109 (181)
100 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 2.4E-13 5.3E-18 124.2 13.6 109 292-405 119-255 (338)
101 cd03350 LbH_THP_succinylT 2,3, 99.5 4.2E-13 9.2E-18 111.4 13.9 110 290-408 7-130 (139)
102 cd00710 LbH_gamma_CA Gamma car 99.5 4.6E-13 9.9E-18 114.8 14.3 105 289-403 13-127 (167)
103 cd04646 LbH_Dynactin_6 Dynacti 99.5 3.3E-13 7.1E-18 115.1 13.1 100 299-408 2-125 (164)
104 PRK13385 2-C-methyl-D-erythrit 99.5 6.4E-13 1.4E-17 120.3 15.8 218 3-270 2-223 (230)
105 COG1212 KdsB CMP-2-keto-3-deox 99.5 1.1E-12 2.4E-17 112.5 15.9 230 1-271 1-243 (247)
106 PRK12461 UDP-N-acetylglucosami 99.5 3.3E-13 7.1E-18 123.0 13.5 36 374-409 136-178 (255)
107 TIGR01852 lipid_A_lpxA acyl-[a 99.5 4.2E-13 9.2E-18 123.1 14.4 103 290-401 22-146 (254)
108 cd03359 LbH_Dynactin_5 Dynacti 99.5 5E-13 1.1E-17 113.8 13.8 99 296-403 21-136 (161)
109 TIGR02287 PaaY phenylacetic ac 99.5 2.2E-13 4.9E-18 118.5 11.7 99 296-404 8-122 (192)
110 cd04182 GT_2_like_f GT_2_like_ 99.5 2E-13 4.4E-18 119.3 11.3 119 4-137 1-122 (186)
111 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 3E-13 6.4E-18 122.8 12.6 111 289-408 102-231 (272)
112 cd04645 LbH_gamma_CA_like Gamm 99.5 7.6E-13 1.7E-17 111.9 14.4 104 290-402 11-123 (153)
113 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 3.4E-13 7.4E-18 101.0 10.6 80 316-405 1-80 (81)
114 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 5.5E-13 1.2E-17 125.9 13.9 75 290-364 97-173 (324)
115 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 1.6E-12 3.4E-17 124.5 17.3 107 292-403 126-254 (343)
116 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 7.3E-13 1.6E-17 125.1 14.6 110 290-404 115-247 (324)
117 PRK05289 UDP-N-acetylglucosami 99.5 8.4E-13 1.8E-17 121.3 14.3 113 289-403 7-134 (262)
118 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 1.2E-12 2.5E-17 115.3 14.5 120 290-410 27-186 (193)
119 TIGR02665 molyb_mobA molybdopt 99.5 1.2E-12 2.6E-17 114.5 14.4 115 4-137 1-119 (186)
120 PLN02296 carbonate dehydratase 99.5 7.9E-13 1.7E-17 120.7 13.5 101 298-408 54-178 (269)
121 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 4.4E-13 9.5E-18 120.3 11.5 110 298-408 82-200 (231)
122 cd05787 LbH_eIF2B_epsilon eIF- 99.5 6.2E-13 1.3E-17 99.1 10.1 78 298-385 1-78 (79)
123 PLN02728 2-C-methyl-D-erythrit 99.5 1.3E-12 2.8E-17 119.0 13.8 128 2-145 23-155 (252)
124 cd04650 LbH_FBP Ferripyochelin 99.4 1.5E-12 3.3E-17 109.8 13.0 94 299-402 3-106 (154)
125 cd03350 LbH_THP_succinylT 2,3, 99.4 1.9E-12 4.2E-17 107.5 13.4 62 291-352 2-65 (139)
126 PRK02726 molybdopterin-guanine 99.4 1.7E-12 3.6E-17 114.8 13.8 110 3-132 7-119 (200)
127 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 1.1E-12 2.4E-17 117.9 12.4 92 290-390 100-206 (269)
128 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 1.7E-12 3.7E-17 116.6 13.6 29 338-366 174-203 (269)
129 COG2068 Uncharacterized MobA-r 99.4 2.5E-12 5.3E-17 109.8 13.7 118 2-134 4-125 (199)
130 TIGR01173 glmU UDP-N-acetylglu 99.4 8.2E-13 1.8E-17 131.9 12.6 121 289-410 272-432 (451)
131 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 1.4E-12 3.1E-17 124.9 13.2 75 290-364 142-241 (343)
132 cd03358 LbH_WxcM_N_like WcxM-l 99.4 1.9E-12 4.1E-17 104.6 12.0 92 300-401 2-110 (119)
133 cd00710 LbH_gamma_CA Gamma car 99.4 3E-12 6.5E-17 109.8 13.8 95 298-401 4-108 (167)
134 TIGR03570 NeuD_NnaD sugar O-ac 99.4 3.2E-12 6.9E-17 113.2 14.3 102 290-401 93-196 (201)
135 KOG1462 Translation initiation 99.4 5.2E-13 1.1E-17 122.7 9.2 94 294-398 332-425 (433)
136 cd03360 LbH_AT_putative Putati 99.4 5.4E-12 1.2E-16 111.0 15.3 93 290-391 90-184 (197)
137 cd04645 LbH_gamma_CA_like Gamm 99.4 3.2E-12 6.9E-17 108.1 12.3 95 299-403 2-112 (153)
138 PLN02472 uncharacterized prote 99.4 3.4E-12 7.5E-17 115.0 12.9 96 298-403 61-178 (246)
139 COG2266 GTP:adenosylcobinamide 99.4 2.3E-12 4.9E-17 106.8 10.6 109 4-132 1-112 (177)
140 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 6.4E-12 1.4E-16 111.8 14.3 34 375-408 150-190 (205)
141 cd03356 LbH_G1P_AT_C_like Left 99.4 3E-12 6.6E-17 95.4 10.3 77 316-402 1-78 (79)
142 TIGR03202 pucB xanthine dehydr 99.4 2.5E-12 5.3E-17 113.0 11.4 120 4-133 1-123 (190)
143 PF01128 IspD: 2-C-methyl-D-er 99.4 3.1E-11 6.7E-16 107.2 18.0 214 4-270 1-219 (221)
144 PRK12461 UDP-N-acetylglucosami 99.4 7.2E-12 1.6E-16 114.2 14.3 54 294-347 27-93 (255)
145 COG0663 PaaY Carbonic anhydras 99.4 3.6E-12 7.8E-17 106.4 11.1 98 298-405 13-126 (176)
146 PRK14489 putative bifunctional 99.4 5.1E-12 1.1E-16 121.8 13.9 120 1-137 3-124 (366)
147 TIGR03570 NeuD_NnaD sugar O-ac 99.4 1.2E-11 2.6E-16 109.4 15.1 106 290-409 87-194 (201)
148 cd04649 LbH_THP_succinylT_puta 99.4 9.1E-12 2E-16 101.2 12.9 88 292-390 3-104 (147)
149 COG1211 IspD 4-diphosphocytidy 99.4 2E-11 4.4E-16 107.8 16.2 133 1-145 2-137 (230)
150 PRK14355 glmU bifunctional N-a 99.4 4.6E-12 1E-16 126.6 13.5 121 289-410 279-439 (459)
151 cd04651 LbH_G1P_AT_C Glucose-1 99.4 5E-12 1.1E-16 99.3 10.8 79 303-393 2-80 (104)
152 cd03360 LbH_AT_putative Putati 99.4 9.2E-12 2E-16 109.5 13.7 105 290-409 84-191 (197)
153 cd05787 LbH_eIF2B_epsilon eIF- 99.4 5.1E-12 1.1E-16 94.1 10.1 77 316-402 1-78 (79)
154 COG1207 GlmU N-acetylglucosami 99.4 2.6E-12 5.6E-17 120.2 9.8 114 295-410 319-439 (460)
155 cd05635 LbH_unknown Uncharacte 99.4 1.1E-11 2.4E-16 96.5 11.9 85 294-390 9-94 (101)
156 TIGR03308 phn_thr-fam phosphon 99.4 1.4E-11 3E-16 108.6 13.5 101 289-401 13-151 (204)
157 PRK14360 glmU bifunctional N-a 99.3 4.4E-12 9.6E-17 126.6 11.4 112 297-410 314-432 (450)
158 PRK00560 molybdopterin-guanine 99.3 1.3E-11 2.9E-16 108.7 12.8 100 3-127 8-112 (196)
159 PRK09451 glmU bifunctional N-a 99.3 1.3E-11 2.9E-16 123.2 13.3 117 290-409 277-435 (456)
160 PRK14356 glmU bifunctional N-a 99.3 1.3E-11 2.9E-16 123.3 11.1 98 290-388 281-386 (456)
161 PRK14352 glmU bifunctional N-a 99.3 2.9E-11 6.4E-16 121.5 13.3 110 298-409 324-440 (482)
162 COG1043 LpxA Acyl-[acyl carrie 99.3 2.8E-11 6.1E-16 104.7 11.1 112 291-404 10-136 (260)
163 PRK14354 glmU bifunctional N-a 99.3 3.8E-11 8.3E-16 120.1 12.8 113 296-410 316-435 (458)
164 COG0746 MobA Molybdopterin-gua 99.3 3E-11 6.4E-16 105.2 10.2 112 1-135 2-116 (192)
165 cd04649 LbH_THP_succinylT_puta 99.3 9E-11 1.9E-15 95.5 12.0 30 376-405 74-108 (147)
166 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 1.3E-10 2.7E-15 103.4 14.2 56 291-346 14-70 (205)
167 PRK14358 glmU bifunctional N-a 99.2 4.4E-11 9.6E-16 119.9 11.6 101 289-390 281-389 (481)
168 PRK05293 glgC glucose-1-phosph 99.2 4.6E-11 1E-15 116.5 11.4 95 290-390 282-379 (380)
169 PRK14490 putative bifunctional 99.2 9.3E-11 2E-15 113.4 12.9 109 1-130 172-283 (369)
170 PRK10502 putative acyl transfe 99.2 8.8E-11 1.9E-15 101.9 11.4 85 297-390 52-157 (182)
171 PRK14357 glmU bifunctional N-a 99.2 4.7E-11 1E-15 119.1 10.7 35 376-410 384-425 (448)
172 cd02518 GT2_SpsF SpsF is a gly 99.2 2.3E-10 4.9E-15 103.9 14.3 115 6-139 2-121 (233)
173 cd04651 LbH_G1P_AT_C Glucose-1 99.2 1.2E-10 2.6E-15 91.4 10.7 74 290-366 7-80 (104)
174 PLN02694 serine O-acetyltransf 99.2 5.8E-11 1.2E-15 107.9 9.9 91 298-401 162-255 (294)
175 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.2E-10 2.6E-15 86.8 10.0 75 318-402 3-79 (80)
176 PRK14500 putative bifunctional 99.2 1.5E-10 3.3E-15 109.8 13.1 108 3-131 160-270 (346)
177 PRK09677 putative lipopolysacc 99.2 2.1E-10 4.6E-15 100.4 13.0 98 294-401 41-173 (192)
178 PRK11132 cysE serine acetyltra 99.2 8.6E-11 1.9E-15 106.8 10.8 93 295-402 140-237 (273)
179 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 3E-10 6.4E-15 103.3 13.2 76 302-386 132-217 (272)
180 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 3.6E-10 7.7E-15 102.6 12.8 91 289-390 177-281 (341)
181 PRK09527 lacA galactoside O-ac 99.2 3.7E-10 8E-15 98.9 12.3 93 299-401 58-174 (203)
182 PRK14353 glmU bifunctional N-a 99.2 2.9E-10 6.2E-15 113.4 13.3 114 291-404 263-398 (446)
183 cd05635 LbH_unknown Uncharacte 99.2 3.1E-10 6.7E-15 88.3 10.2 75 289-365 22-96 (101)
184 cd04647 LbH_MAT_like Maltose O 99.2 4.3E-10 9.2E-15 89.2 11.2 96 297-402 2-102 (109)
185 COG1043 LpxA Acyl-[acyl carrie 99.2 2.7E-10 6E-15 98.7 10.6 119 290-408 21-182 (260)
186 cd03358 LbH_WxcM_N_like WcxM-l 99.1 7.5E-10 1.6E-14 89.3 12.2 76 290-365 10-102 (119)
187 cd03359 LbH_Dynactin_5 Dynacti 99.1 9.2E-10 2E-14 93.7 12.9 99 301-404 6-125 (161)
188 TIGR01172 cysE serine O-acetyl 99.1 3.4E-10 7.4E-15 96.3 10.1 91 297-402 62-157 (162)
189 TIGR01172 cysE serine O-acetyl 99.1 5E-10 1.1E-14 95.3 11.1 77 290-366 61-149 (162)
190 cd03354 LbH_SAT Serine acetylt 99.1 7.2E-10 1.6E-14 86.7 11.0 89 298-401 4-97 (101)
191 PRK10191 putative acyl transfe 99.1 8.6E-10 1.9E-14 91.4 11.3 86 290-393 41-128 (146)
192 PRK14359 glmU bifunctional N-a 99.1 6.3E-10 1.4E-14 110.5 12.5 98 290-390 253-357 (430)
193 KOG3121 Dynactin, subunit p25 99.1 1.5E-10 3.2E-15 91.5 6.2 100 296-404 33-149 (184)
194 COG1045 CysE Serine acetyltran 99.1 3.7E-10 7.9E-15 95.5 8.5 92 289-384 66-169 (194)
195 COG1083 NeuA CMP-N-acetylneura 99.1 2.9E-09 6.2E-14 91.1 14.0 173 1-193 1-186 (228)
196 cd03357 LbH_MAT_GAT Maltose O- 99.1 1.4E-09 2.9E-14 93.5 12.3 45 348-402 118-162 (169)
197 PLN02694 serine O-acetyltransf 99.1 4.3E-10 9.4E-15 102.2 9.5 92 289-384 159-262 (294)
198 PRK10191 putative acyl transfe 99.1 7.6E-10 1.6E-14 91.7 10.1 79 288-366 45-128 (146)
199 PRK10502 putative acyl transfe 99.1 1.2E-09 2.6E-14 94.8 11.5 78 331-408 71-164 (182)
200 PLN02357 serine acetyltransfer 99.1 9.5E-10 2.1E-14 102.8 11.2 83 291-390 227-311 (360)
201 PLN02357 serine acetyltransfer 99.1 1.1E-09 2.5E-14 102.3 11.7 93 288-384 230-328 (360)
202 PLN02739 serine acetyltransfer 99.1 1.2E-09 2.6E-14 101.4 10.8 84 290-390 205-290 (355)
203 cd00208 LbetaH Left-handed par 99.1 1.6E-09 3.4E-14 80.2 9.7 35 298-332 2-36 (78)
204 PRK11132 cysE serine acetyltra 99.0 1.8E-09 4E-14 98.2 11.6 92 289-384 140-243 (273)
205 TIGR03535 DapD_actino 2,3,4,5- 99.0 2.6E-09 5.6E-14 96.6 12.4 89 289-390 152-256 (319)
206 PRK02862 glgC glucose-1-phosph 99.0 1.7E-09 3.8E-14 106.8 12.2 81 297-390 293-392 (429)
207 PRK10092 maltose O-acetyltrans 99.0 2.9E-09 6.4E-14 92.1 12.0 43 349-401 130-172 (183)
208 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 2.5E-09 5.3E-14 97.2 11.8 101 299-406 175-286 (341)
209 COG0448 GlgC ADP-glucose pyrop 99.0 1.3E-09 2.8E-14 102.3 10.0 91 290-393 273-363 (393)
210 PRK00725 glgC glucose-1-phosph 99.0 2.5E-09 5.3E-14 105.6 11.8 67 314-391 327-393 (425)
211 PLN02739 serine acetyltransfer 99.0 2E-09 4.4E-14 99.8 10.0 93 288-384 209-307 (355)
212 TIGR03535 DapD_actino 2,3,4,5- 99.0 5E-09 1.1E-13 94.8 12.0 102 294-407 151-262 (319)
213 cd00208 LbetaH Left-handed par 99.0 5E-09 1.1E-13 77.4 10.0 65 316-389 2-76 (78)
214 PRK09677 putative lipopolysacc 99.0 7.8E-09 1.7E-13 90.6 12.7 96 314-409 43-171 (192)
215 COG2171 DapD Tetrahydrodipicol 99.0 2.8E-09 6.1E-14 94.4 9.7 92 290-390 114-215 (271)
216 COG1208 GCD1 Nucleoside-diphos 99.0 3.8E-09 8.2E-14 101.5 11.4 89 305-404 253-348 (358)
217 PRK00844 glgC glucose-1-phosph 99.0 3.4E-09 7.4E-14 104.2 11.3 71 311-392 312-382 (407)
218 cd04180 UGPase_euk_like Eukary 99.0 2.2E-10 4.8E-15 105.2 2.5 123 5-137 2-136 (266)
219 COG2171 DapD Tetrahydrodipicol 99.0 3.8E-09 8.2E-14 93.6 9.6 104 303-407 109-221 (271)
220 cd03357 LbH_MAT_GAT Maltose O- 99.0 7.6E-09 1.6E-13 88.9 11.3 86 314-408 62-158 (169)
221 cd05825 LbH_wcaF_like wcaF-lik 99.0 1.3E-08 2.7E-13 80.4 11.8 94 296-401 3-99 (107)
222 PRK10092 maltose O-acetyltrans 98.9 1.3E-08 2.8E-13 88.1 11.6 33 376-408 136-169 (183)
223 PRK09527 lacA galactoside O-ac 98.9 1.9E-08 4E-13 88.3 12.2 73 294-366 73-167 (203)
224 COG1045 CysE Serine acetyltran 98.9 7.8E-09 1.7E-13 87.6 8.9 86 291-390 62-152 (194)
225 cd05825 LbH_wcaF_like wcaF-lik 98.9 1.8E-08 3.8E-13 79.6 10.5 87 314-409 3-97 (107)
226 cd04193 UDPGlcNAc_PPase UDPGlc 98.9 1.2E-07 2.5E-12 89.5 17.4 161 3-172 15-221 (323)
227 TIGR02091 glgC glucose-1-phosp 98.9 1.2E-08 2.6E-13 98.9 10.3 63 303-365 295-361 (361)
228 PLN02241 glucose-1-phosphate a 98.9 1.6E-08 3.6E-13 100.2 11.4 77 301-390 304-399 (436)
229 cd03354 LbH_SAT Serine acetylt 98.8 3.4E-08 7.4E-13 77.1 10.7 34 331-364 54-88 (101)
230 TIGR01208 rmlA_long glucose-1- 98.8 2.7E-08 5.8E-13 96.1 11.4 50 299-349 251-300 (353)
231 cd04647 LbH_MAT_like Maltose O 98.8 3.9E-08 8.4E-13 77.9 10.2 16 332-347 22-37 (109)
232 TIGR02092 glgD glucose-1-phosp 98.8 2.8E-08 6E-13 96.6 10.5 74 292-366 280-356 (369)
233 KOG4042 Dynactin subunit p27/W 98.8 4.8E-09 1E-13 83.7 4.0 93 290-391 20-129 (190)
234 PTZ00339 UDP-N-acetylglucosami 98.7 8.7E-07 1.9E-11 87.4 18.7 186 3-196 106-350 (482)
235 PF02348 CTP_transf_3: Cytidyl 98.7 6.7E-08 1.4E-12 86.6 9.8 118 5-137 1-120 (217)
236 KOG3121 Dynactin, subunit p25 98.7 8.9E-09 1.9E-13 81.5 2.9 104 290-407 45-163 (184)
237 cd03349 LbH_XAT Xenobiotic acy 98.6 2.4E-07 5.3E-12 77.1 10.3 94 298-401 3-116 (145)
238 KOG1460 GDP-mannose pyrophosph 98.6 1.5E-07 3.2E-12 84.2 7.1 69 313-391 287-356 (407)
239 COG1861 SpsF Spore coat polysa 98.5 1.1E-06 2.3E-11 75.8 10.8 118 1-137 1-123 (241)
240 PRK00576 molybdopterin-guanine 98.5 1.3E-06 2.8E-11 75.7 11.0 94 26-132 3-101 (178)
241 KOG1322 GDP-mannose pyrophosph 98.5 1.5E-07 3.3E-12 85.6 5.1 85 309-403 259-345 (371)
242 cd03349 LbH_XAT Xenobiotic acy 98.5 1.1E-06 2.4E-11 73.1 9.6 33 331-363 73-106 (145)
243 PLN02474 UTP--glucose-1-phosph 98.5 4.5E-05 9.8E-10 74.8 21.6 186 2-196 78-308 (469)
244 KOG4750 Serine O-acetyltransfe 98.4 8.6E-07 1.9E-11 76.2 6.4 78 299-390 151-233 (269)
245 TIGR02353 NRPS_term_dom non-ri 98.3 2.8E-06 6.1E-11 88.5 10.4 92 297-402 598-691 (695)
246 TIGR02353 NRPS_term_dom non-ri 98.3 3.4E-06 7.3E-11 88.0 10.5 91 296-401 112-205 (695)
247 KOG4042 Dynactin subunit p27/W 98.3 1.4E-06 3E-11 69.9 5.8 103 296-402 8-129 (190)
248 KOG4750 Serine O-acetyltransfe 98.3 1.8E-06 3.9E-11 74.2 6.7 91 290-384 148-250 (269)
249 COG0110 WbbJ Acetyltransferase 98.2 1.2E-05 2.6E-10 70.4 10.5 87 295-390 66-157 (190)
250 COG0110 WbbJ Acetyltransferase 98.2 9E-06 2E-10 71.2 9.7 19 391-409 147-165 (190)
251 cd00897 UGPase_euk Eukaryotic 98.1 0.00039 8.4E-09 64.7 18.4 186 1-196 1-232 (300)
252 PF07959 Fucokinase: L-fucokin 98.0 2.1E-05 4.6E-10 77.0 9.1 85 109-197 54-158 (414)
253 PRK13412 fkp bifunctional fuco 98.0 8.9E-05 1.9E-09 78.7 13.7 209 110-364 154-388 (974)
254 COG4801 Predicted acyltransfer 98.0 3.6E-05 7.8E-10 66.7 8.7 96 293-404 19-115 (277)
255 COG4284 UDP-glucose pyrophosph 97.8 0.006 1.3E-07 59.2 21.3 180 3-192 105-334 (472)
256 PF00132 Hexapep: Bacterial tr 97.8 1.4E-05 3E-10 49.3 2.2 32 298-329 3-34 (36)
257 PLN02435 probable UDP-N-acetyl 97.7 0.0015 3.1E-08 64.8 16.0 186 3-197 116-364 (493)
258 PF14602 Hexapep_2: Hexapeptid 97.7 4.3E-05 9.2E-10 46.3 3.2 9 318-326 5-13 (34)
259 PF01704 UDPGP: UTP--glucose-1 97.7 0.0036 7.9E-08 61.2 17.8 188 2-197 55-288 (420)
260 cd06424 UGGPase UGGPase cataly 97.5 0.0016 3.6E-08 60.8 12.8 180 5-193 2-248 (315)
261 PF14602 Hexapep_2: Hexapeptid 97.5 0.00022 4.7E-09 43.2 4.1 31 297-329 2-32 (34)
262 COG4801 Predicted acyltransfer 97.5 0.00044 9.5E-09 60.1 7.4 70 314-392 16-85 (277)
263 PLN02830 UDP-sugar pyrophospho 96.9 0.034 7.3E-07 56.9 15.7 147 2-157 127-322 (615)
264 TIGR03552 F420_cofC 2-phospho- 96.2 0.015 3.3E-07 50.9 6.9 86 36-132 30-117 (195)
265 cd00761 Glyco_tranf_GTA_type G 95.7 0.14 3.1E-06 41.5 10.3 91 36-131 9-102 (156)
266 PF00535 Glycos_transf_2: Glyc 95.6 0.081 1.8E-06 44.0 8.6 110 31-144 4-116 (169)
267 PF07959 Fucokinase: L-fucokin 95.3 0.045 9.7E-07 53.8 6.8 48 305-353 276-323 (414)
268 cd06439 CESA_like_1 CESA_like_ 93.4 1.4 3E-05 39.9 11.9 108 20-133 22-136 (251)
269 cd06423 CESA_like CESA_like is 92.5 1.5 3.3E-05 36.3 10.2 101 31-134 3-106 (180)
270 cd04195 GT2_AmsE_like GT2_AmsE 92.4 1.7 3.6E-05 37.7 10.7 99 30-133 3-107 (201)
271 cd04186 GT_2_like_c Subfamily 91.9 2.1 4.5E-05 35.4 10.2 97 31-134 3-102 (166)
272 KOG2638 UDP-glucose pyrophosph 91.4 14 0.00031 35.7 18.7 135 3-144 103-274 (498)
273 cd04188 DPG_synthase DPG_synth 91.3 1 2.2E-05 39.6 8.0 107 32-141 4-117 (211)
274 cd06427 CESA_like_2 CESA_like_ 90.3 3.2 7E-05 37.3 10.5 108 31-141 7-119 (241)
275 cd04179 DPM_DPG-synthase_like 89.5 3.2 6.9E-05 35.2 9.4 106 32-141 4-114 (185)
276 cd06421 CESA_CelA_like CESA_Ce 88.1 7.7 0.00017 34.3 11.3 98 31-133 7-111 (234)
277 cd04196 GT_2_like_d Subfamily 88.0 4.1 8.9E-05 35.4 9.3 99 31-132 4-105 (214)
278 cd06442 DPM1_like DPM1_like re 88.0 3.5 7.6E-05 36.3 8.9 105 31-139 3-111 (224)
279 cd04185 GT_2_like_b Subfamily 87.9 5.1 0.00011 34.7 9.8 95 36-132 9-105 (202)
280 cd02510 pp-GalNAc-T pp-GalNAc- 87.7 5.8 0.00013 37.1 10.6 104 31-137 4-114 (299)
281 PLN02726 dolichyl-phosphate be 86.9 7 0.00015 35.2 10.3 84 54-140 42-127 (243)
282 PRK10714 undecaprenyl phosphat 86.7 6 0.00013 37.7 10.1 98 38-139 24-122 (325)
283 cd04192 GT_2_like_e Subfamily 86.7 7.1 0.00015 34.3 10.1 104 31-137 3-113 (229)
284 TIGR01556 rhamnosyltran L-rham 86.7 18 0.0004 33.2 13.2 91 37-134 8-101 (281)
285 PRK11204 N-glycosyltransferase 86.4 6.6 0.00014 38.7 10.6 101 30-134 59-162 (420)
286 cd02525 Succinoglycan_BP_ExoA 86.0 7.1 0.00015 34.8 9.9 96 37-138 13-113 (249)
287 cd02520 Glucosylceramide_synth 85.3 12 0.00026 32.3 10.6 98 31-131 7-111 (196)
288 cd04187 DPM1_like_bac Bacteria 85.1 11 0.00023 32.0 10.1 83 53-140 30-113 (181)
289 KOG2978 Dolichol-phosphate man 84.4 10 0.00022 32.7 8.9 103 35-142 17-124 (238)
290 PRK13412 fkp bifunctional fuco 84.2 2.1 4.5E-05 46.4 6.0 66 326-401 331-398 (974)
291 cd06435 CESA_NdvC_like NdvC_li 82.8 11 0.00024 33.5 9.6 102 30-132 3-110 (236)
292 cd06433 GT_2_WfgS_like WfgS an 82.2 11 0.00024 32.1 9.1 90 37-134 11-103 (202)
293 cd06438 EpsO_like EpsO protein 81.8 27 0.00059 29.6 11.4 99 31-133 3-108 (183)
294 cd04184 GT2_RfbC_Mx_like Myxoc 81.6 13 0.00029 31.8 9.5 91 37-131 15-108 (202)
295 PRK14583 hmsR N-glycosyltransf 81.5 11 0.00023 37.6 9.8 102 29-134 79-183 (444)
296 TIGR03111 glyc2_xrt_Gpos1 puta 81.4 16 0.00034 36.4 10.9 102 29-134 53-159 (439)
297 PF04519 Bactofilin: Polymer-f 81.3 6.2 0.00013 30.3 6.3 21 337-357 36-56 (101)
298 TIGR03472 HpnI hopanoid biosyn 80.5 13 0.00029 36.0 9.8 104 29-135 45-155 (373)
299 PRK10073 putative glycosyl tra 79.6 17 0.00037 34.6 10.1 103 31-139 12-118 (328)
300 cd06420 GT2_Chondriotin_Pol_N 79.5 14 0.0003 31.1 8.7 98 31-131 3-104 (182)
301 COG1215 Glycosyltransferases, 78.9 14 0.0003 36.4 9.6 105 29-137 58-168 (439)
302 cd06434 GT2_HAS Hyaluronan syn 77.4 21 0.00045 31.5 9.5 89 37-132 14-103 (235)
303 cd02526 GT2_RfbF_like RfbF is 76.6 31 0.00068 30.4 10.5 90 33-128 6-97 (237)
304 COG1664 CcmA Integral membrane 75.0 21 0.00045 29.6 7.9 68 317-395 54-121 (146)
305 KOG2388 UDP-N-acetylglucosamin 74.1 2.9 6.3E-05 41.1 3.0 40 3-47 97-139 (477)
306 TIGR03469 HonB hopene-associat 72.5 35 0.00076 33.2 10.3 109 30-138 45-165 (384)
307 cd06436 GlcNAc-1-P_transferase 71.2 47 0.001 28.5 9.9 94 36-131 9-114 (191)
308 PF04519 Bactofilin: Polymer-f 71.0 13 0.00029 28.4 5.7 68 313-392 29-97 (101)
309 cd02511 Beta4Glucosyltransfera 70.7 42 0.0009 29.8 9.7 85 37-133 13-98 (229)
310 PTZ00260 dolichyl-phosphate be 70.4 34 0.00073 32.7 9.4 108 31-141 76-200 (333)
311 PRK10018 putative glycosyl tra 69.9 58 0.0012 30.2 10.6 90 37-133 18-112 (279)
312 PF01983 CofC: Guanylyl transf 67.6 2.5 5.4E-05 37.6 1.0 110 4-131 1-113 (217)
313 cd06913 beta3GnTL1_like Beta 1 67.5 47 0.001 29.0 9.3 96 37-135 10-113 (219)
314 PF13641 Glyco_tranf_2_3: Glyc 67.3 7.6 0.00016 34.3 4.1 105 30-137 6-117 (228)
315 cd06437 CESA_CaSu_A2 Cellulose 65.6 48 0.001 29.2 9.1 91 37-131 14-112 (232)
316 PRK11498 bcsA cellulose syntha 65.1 63 0.0014 35.1 10.9 105 29-143 264-375 (852)
317 PRK10063 putative glycosyl tra 61.4 1.3E+02 0.0027 27.3 11.6 90 37-132 14-107 (248)
318 COG1216 Predicted glycosyltran 60.9 72 0.0016 29.8 9.6 106 31-139 10-117 (305)
319 PF07302 AroM: AroM protein; 58.9 1.2E+02 0.0025 27.1 9.8 109 6-130 91-199 (221)
320 cd02522 GT_2_like_a GT_2_like_ 56.7 84 0.0018 27.2 8.9 94 31-135 5-101 (221)
321 PF13704 Glyco_tranf_2_4: Glyc 53.7 90 0.0019 23.2 7.5 79 37-120 5-84 (97)
322 TIGR03030 CelA cellulose synth 51.1 1.6E+02 0.0034 31.6 11.1 100 30-134 136-256 (713)
323 PRK13915 putative glucosyl-3-p 42.9 1.3E+02 0.0028 28.3 8.1 107 32-141 38-152 (306)
324 COG1664 CcmA Integral membrane 42.8 99 0.0021 25.6 6.4 62 303-366 58-119 (146)
325 PF10111 Glyco_tranf_2_2: Glyc 38.3 2.7E+02 0.0059 25.6 9.5 37 90-129 74-111 (281)
326 COG0381 WecB UDP-N-acetylgluco 36.0 75 0.0016 30.8 5.3 78 42-120 22-104 (383)
327 PRK11557 putative DNA-binding 35.5 3.3E+02 0.0071 24.9 9.6 95 37-144 116-210 (278)
328 COG4917 EutP Ethanolamine util 34.2 92 0.002 25.2 4.6 67 3-71 66-142 (148)
329 COG1920 Predicted nucleotidylt 34.2 1E+02 0.0022 26.8 5.2 105 4-131 1-111 (210)
330 PF14134 DUF4301: Domain of un 34.0 1.6E+02 0.0034 29.6 7.2 48 25-72 165-221 (513)
331 PF09837 DUF2064: Uncharacteri 30.1 2E+02 0.0043 22.9 6.1 84 42-132 1-86 (122)
332 PRK00923 sirohydrochlorin coba 29.8 64 0.0014 25.7 3.3 23 35-58 44-66 (126)
333 KOG2638 UDP-glucose pyrophosph 29.4 73 0.0016 31.1 4.0 15 120-134 163-177 (498)
334 COG1737 RpiR Transcriptional r 28.3 4.4E+02 0.0096 24.3 9.1 95 37-144 118-212 (281)
335 PF05060 MGAT2: N-acetylglucos 28.1 66 0.0014 30.9 3.5 57 17-73 23-82 (356)
336 PRK11337 DNA-binding transcrip 27.7 4.8E+02 0.01 24.0 9.3 95 37-144 128-222 (292)
337 PF10087 DUF2325: Uncharacteri 26.8 2.7E+02 0.006 20.8 7.6 74 55-137 2-77 (97)
338 TIGR00285 DNA-binding protein 25.2 62 0.0014 24.1 2.2 30 31-60 4-34 (87)
339 cd05013 SIS_RpiR RpiR-like pro 24.5 3.4E+02 0.0074 21.1 9.1 91 39-141 3-93 (139)
340 cd03409 Chelatase_Class_II Cla 24.4 78 0.0017 23.7 2.8 22 36-58 44-65 (101)
341 PF01936 NYN: NYN domain; Int 23.9 3.7E+02 0.0081 21.3 7.6 102 37-143 20-127 (146)
342 cd01025 TOPRIM_recR TOPRIM_rec 23.0 3.8E+02 0.0082 21.1 6.5 50 37-87 43-94 (112)
343 PRK05782 bifunctional sirohydr 21.9 88 0.0019 29.9 3.1 54 1-59 3-71 (335)
344 PRK15482 transcriptional regul 21.8 6.3E+02 0.014 23.2 9.1 93 39-144 125-217 (285)
345 PRK05647 purN phosphoribosylgl 21.7 4.5E+02 0.0097 22.9 7.4 16 4-21 2-17 (200)
346 TIGR02990 ectoine_eutA ectoine 20.5 6.3E+02 0.014 22.8 8.2 83 38-123 107-196 (239)
347 COG0463 WcaA Glycosyltransfera 20.4 3.3E+02 0.0072 22.3 6.5 82 37-123 16-98 (291)
348 PF13712 Glyco_tranf_2_5: Glyc 20.1 5.8E+02 0.013 22.5 7.9 54 80-136 30-85 (217)
349 TIGR00236 wecB UDP-N-acetylglu 20.0 2.4E+02 0.0052 26.9 5.9 77 38-119 15-97 (365)
No 1
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-65 Score=444.26 Aligned_cols=403 Identities=67% Similarity=1.091 Sum_probs=365.1
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++++||||.|||++|+|||||+.+.||||+||+|+|||.|.++.+++.++..+|++++-++++.+.+++......+...+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 35899999999999999999999999999999999999999999999999999999999999999999998777788899
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+|..++...|+++.|++.++.+....++.++++++|.-++++|+++++.|++.+..++|++++++++++++||.++.|+.
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~ 160 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPS 160 (407)
T ss_pred hhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCC
Confidence 99999999999999999999987767899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|+.|.|||.+..++..++|+|+|++++|+.+++....+.+..... +.+.. -.+.+.++.+++.|++..|+.
T Consensus 161 t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~-----~~~~~-l~~g~~d~irLeqDvlspLag 234 (407)
T KOG1460|consen 161 TGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVE-----KDLPL-LQPGPADFIRLEQDVLSPLAG 234 (407)
T ss_pred cCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhh-----hcccc-cCCCccceEEeechhhhhhcC
Confidence 999999999999999999999999999999999999876543211000 00000 122346888999999999999
Q ss_pred CCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCc
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANV 321 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~ 321 (411)
++++|+|...++|..|.|+...+.|++.|++++...++..++++.. +.+.|.+++||+|++.|.|+|+|++|+.||.++
T Consensus 235 ~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pg-t~a~IigdVyIhPsakvhptAkiGPNVSIga~v 313 (407)
T KOG1460|consen 235 SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPG-TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANV 313 (407)
T ss_pred CCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCC-CCceEEeeeEEcCcceeCCccccCCCceecCCc
Confidence 9999999999999999999999999999999999888888887532 347899999999999999999999999999999
Q ss_pred EECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcc----cceeEECCCCEECCCcEEcceEEcC
Q 015225 322 RVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAK----LGITILGEAVTVEDEVVVINSIVLP 397 (411)
Q Consensus 322 ~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~----~~~~~i~~~~~i~~~~~v~~~~i~~ 397 (411)
+||+|++|.+|+|.++|.|.+|+.+-+|+||.++.||..+++.+.+-.++. .+.++.|+.+.+++.+.|.+|++.|
T Consensus 314 rvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 314 RVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred eecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 999999999999999999999999999999999999999999986554432 3559999999999999999999999
Q ss_pred CCEEcCCCCCcccC
Q 015225 398 NKVLNVSVQEEIIL 411 (411)
Q Consensus 398 ~~~v~~~~~~~~~~ 411 (411)
+.+++.++++||+|
T Consensus 394 ~k~l~vs~~~eIil 407 (407)
T KOG1460|consen 394 NKELNVSVQDEIIL 407 (407)
T ss_pred CCccceeeecceeC
Confidence 99999999999987
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=5.4e-57 Score=401.14 Aligned_cols=348 Identities=32% Similarity=0.588 Sum_probs=304.6
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHH-hhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYV-SSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~-~~~~~~~~~~ 80 (411)
+.|+|+||.|| .|+||+|||..+||||+|++|+|||+|++++|.++ |+++|++.++++.+.+..++ +.+...+|++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVe 84 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVE 84 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceE
Confidence 36899999999 99999999999999999999999999999999997 99999999998877555554 4444567878
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
+.+..|.++.|+++.+..+++++-...+.+|+|++||.++..++++++++|+++++++|++.+++ ++++.||.+..|.
T Consensus 85 i~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v--depSkyGvv~~d~ 162 (371)
T KOG1322|consen 85 ILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV--DEPSKYGVVVIDE 162 (371)
T ss_pred EEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec--cCccccceEEEec
Confidence 88888888899999999999988644344899999999999999999999999999999999999 8899999999994
Q ss_pred CCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 161 NTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
.+++|.+|.|||....+...++|+|+|+|++++.+... + -+|+.++++.++
T Consensus 163 ~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~--------------------------p---tSiekEifP~~a 213 (371)
T KOG1322|consen 163 DTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLR--------------------------P---TSIEKEIFPAMA 213 (371)
T ss_pred CCCceeEehhCchhhhhccccceEEEECHHHHhHhhhc--------------------------c---cchhhhhhhhhh
Confidence 49999999999998888899999999999999877621 1 126689999999
Q ss_pred CCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCC
Q 015225 241 GKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISAN 320 (411)
Q Consensus 241 ~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~ 320 (411)
+..++++|.++|||.||++|.||+.+...|++......+.- ..+++.+.+++.+.+-+.+|.+|+|+++++||++
T Consensus 214 ~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r-----~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r 288 (371)
T KOG1322|consen 214 EEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPR-----LLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPR 288 (371)
T ss_pred hcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcc-----ccCCccccccEeeccccccCCccEECCCceECCC
Confidence 99999999999999999999999999888887664422221 1234677888999999999999999999999999
Q ss_pred cEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcC
Q 015225 321 VRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLP 397 (411)
Q Consensus 321 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~ 397 (411)
|+|+++++|.+|+|+.+.+++.++.|.+++++.++.||.+++|.+. ++||+++.|-+.-.+.+..+.|
T Consensus 289 ~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~---------a~lG~nV~V~d~~~vn~g~~l~ 356 (371)
T KOG1322|consen 289 VRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN---------AVLGKNVIVADEDYVNEGSGLP 356 (371)
T ss_pred cEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc---------cEeccceEEecccccccceeEE
Confidence 9999999999999999999999999999999999999999999987 9999999998777774333333
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-55 Score=417.10 Aligned_cols=319 Identities=33% Similarity=0.539 Sum_probs=279.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+|+||||||| +||||+|+|..+||||+||+|+|||+|+|++|+++ |++++++.+++..+.+++++.+. ..++.++.
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~ 76 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDG-EGLGVRIT 76 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcc-cccCCceE
Confidence 4899999999 99999999999999999999999999999999997 99999999999999999999985 45688999
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
++.+....||+++|+.+.+++. .++|++++||.+++.++..++++|+++.+.+++...+. .++..||.+..+..+
T Consensus 77 y~~e~~~lGTag~l~~a~~~l~---~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~--~~~~~~Gvv~~~~~~ 151 (358)
T COG1208 77 YVVEKEPLGTAGALKNALDLLG---GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRV--LDPSEFGVVETDDGD 151 (358)
T ss_pred EEecCCcCccHHHHHHHHHhcC---CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEec--CCCCcCceEEecCCC
Confidence 9999889999999999999996 48999999999999999999999998888888888887 555889988887333
Q ss_pred CceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 163 KELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 163 ~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++|.++.|||. ...+++.++|+|+|+|++|+.+.. ....++..++++.++
T Consensus 152 ~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~----------------------------~~~~~~~~~~~~~l~ 203 (358)
T COG1208 152 GRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEK----------------------------GERFDFEEELLPALA 203 (358)
T ss_pred ceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhccc----------------------------CCcccchhhHHHHHH
Confidence 59999999983 566789999999999999995442 234445467999999
Q ss_pred CCCc-eEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccC--CCCCCcEEcCCcEECCCCEECCCCEECCCcEE
Q 015225 241 GKKQ-LYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASG--NGITSATIAGDVYIHPSAKVHPTAKIGPNVSI 317 (411)
Q Consensus 241 ~~~~-v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~i 317 (411)
+.+. ++++.+.++|.||++|++|+++++.+++............. .... +.+.++++|++++.|++++.|+++++|
T Consensus 204 ~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~i 282 (358)
T COG1208 204 AKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVI 282 (358)
T ss_pred hCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEE
Confidence 8886 99999999999999999999999999875533211000000 0123 788999999999999999999999999
Q ss_pred CCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 318 SANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 318 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
|++|.||+++.|.+|+|+++|.|+++++|.+|+|+++|.||+
T Consensus 283 g~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 283 GEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 999999999999999999999999999999999999999999
No 4
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.3e-51 Score=401.49 Aligned_cols=355 Identities=21% Similarity=0.348 Sum_probs=257.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| +|+||+|+|..+||+|+|++|+ |||+|+|++|.++ |+++|+|++++..+.+++|+++. +.|+.
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~ 76 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIG-SPWDL 76 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCC-Ccccc
Confidence 899999999999 9999999999999999999999 8999999999997 99999999999999999999764 34543
Q ss_pred c-----eE----EeeCCC---CCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCc
Q 015225 80 P-----VR----YLKEDK---PHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSA 147 (411)
Q Consensus 80 ~-----i~----~v~~~~---~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 147 (411)
. +. +..+.+ ..|++++++.+++++....+++|+|++||.+++.++.++++.|.+.++++++++...+.
T Consensus 77 ~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~ 156 (380)
T PRK05293 77 DRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPW 156 (380)
T ss_pred cCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcch
Confidence 2 23 333322 47999999999999863334789999999999999999999999888888888776644
Q ss_pred ccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHH-hhhhhhcccccccccccchhhhhhhcccCCCC
Q 015225 148 ESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTA-IQGVLTHREDRANIRQVSSFEALQSATRTLPV 226 (411)
Q Consensus 148 ~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
+++..||.+..| ++++|..+.|||..+.+++.++|+|+|++++|.. +.+..... .
T Consensus 157 ~~~~~yG~v~~d-~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-----------------------~ 212 (380)
T PRK05293 157 EEASRFGIMNTD-ENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNP-----------------------N 212 (380)
T ss_pred hhccccCEEEEC-CCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcC-----------------------C
Confidence 677889999988 6789999999997767889999999999998753 33221100 1
Q ss_pred ceeeeccchhhcccCC-CceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccC-CCCCCcEEcCCcEECCCCE
Q 015225 227 DFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASG-NGITSATIAGDVYIHPSAK 304 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 304 (411)
+..++.+++++.++++ .++++|..+++|.+++++++|+++++.++...... .++... ...+...+.++++|++++
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~- 289 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENA- 289 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCC-
Confidence 1122337899988866 47999999999999999999999998887654321 111110 000122233344444433
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
.|. ++.||++|.|+ ..+.+|+||++|.|+++|+|.+|+|++++.||+++++.+ |+|++++.|
T Consensus 290 -----~i~-~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~----------~ii~~~~~i 351 (380)
T PRK05293 290 -----KVK-NSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER----------AIIGENAVI 351 (380)
T ss_pred -----EEe-cCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeE----------EEECCCCEE
Confidence 332 45555555554 234566666666666666666666666666666666655 666666666
Q ss_pred CCCcEEcc-----eEEcCCCEEcCC
Q 015225 385 EDEVVVIN-----SIVLPNKVLNVS 404 (411)
Q Consensus 385 ~~~~~v~~-----~~i~~~~~v~~~ 404 (411)
+.++.+.+ .+||.++.|..+
T Consensus 352 ~~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 352 GDGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred CCCCEEcCCCceeEEEeCCCCCCCC
Confidence 66666633 556666555543
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.3e-50 Score=396.42 Aligned_cols=336 Identities=22% Similarity=0.345 Sum_probs=250.4
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| +|+||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|++++..+.+.+|+...+...+.
T Consensus 3 ~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 3 MPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 778999999999 9999999999999999999999 9999999999997 99999999999999999999753211122
Q ss_pred ceEEee---CC------CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccc
Q 015225 80 PVRYLK---ED------KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 80 ~i~~v~---~~------~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (411)
.+.++. +. ...||+++++.+++++.+...++|++++||++++.++.+++++|.++++++++++.+.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~ 159 (407)
T PRK00844 80 LGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEA 159 (407)
T ss_pred CCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHc
Confidence 223331 11 257999999999999964323569999999999999999999999888888888876654677
Q ss_pred cceeEEEEcCCCCceeEEeccCCCcc-------cCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhccc
Q 015225 151 HQFGELIADPNTKELLHYTEKPETFV-------SDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATR 222 (411)
Q Consensus 151 ~~~g~v~~d~~~~~v~~~~e~~~~~~-------~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (411)
..||.+..| ++++|..+.|||..+. +.++++|+|+|++++| +.|.+....
T Consensus 160 ~~~Gvv~~d-~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~--------------------- 217 (407)
T PRK00844 160 SAFGVIEVD-PDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAAD--------------------- 217 (407)
T ss_pred ccCCEEEEC-CCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcC---------------------
Confidence 889999998 6789999999986432 4689999999999986 556542111
Q ss_pred CCCCceeeeccchhhcccCCCceEEEee------------cceeeecCCccchhhcchHHHhhhhhc---CccccccC--
Q 015225 223 TLPVDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSSLYLALFKIT---SPQLLASG-- 285 (411)
Q Consensus 223 ~~~~~~~~l~~d~l~~l~~~~~v~~~~~------------~~~~~~I~t~~d~~~a~~~~l~~~~~~---~~~~~~~~-- 285 (411)
+.+.+++.+|+++.+++++++++|.. ++||.|+++|++|+++++.++...... .+.....+
T Consensus 218 --~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~ 295 (407)
T PRK00844 218 --EDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSS 295 (407)
T ss_pred --CcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccC
Confidence 01223454799999998889999965 589999999999999999999643210 00000000
Q ss_pred -CCCCC--------cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCE
Q 015225 286 -NGITS--------ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSS 356 (411)
Q Consensus 286 -~~~~~--------~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ 356 (411)
..++. ..+.++++||+++.|+ ++.|. +++||++|.|+++|+|.+|+|+++|+|+++|+|.+|+|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~ 373 (407)
T PRK00844 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVV 373 (407)
T ss_pred CCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Confidence 00000 1123345666666666 66665 5677777777777777777777777777777777777777777
Q ss_pred ECCCcEEec
Q 015225 357 LGRWARVQG 365 (411)
Q Consensus 357 ig~~~~i~~ 365 (411)
|++++++.+
T Consensus 374 i~~~~~i~~ 382 (407)
T PRK00844 374 VPPGATIGV 382 (407)
T ss_pred ECCCCEECC
Confidence 777766655
No 6
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=374.26 Aligned_cols=336 Identities=23% Similarity=0.367 Sum_probs=266.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|+++.|+||||| .|+||.|||..++||.+|++|+ .||+.+|++|.++ |+.+|.|++.+....+.+|++.++ .|+.
T Consensus 3 ~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~-~w~l 78 (393)
T COG0448 3 KKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGW-PWDL 78 (393)
T ss_pred ccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCC-cccc
Confidence 457899999999 9999999999999999999999 8999999999996 999999999999889999999874 3432
Q ss_pred -----ceEEeeC-------CCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCc
Q 015225 80 -----PVRYLKE-------DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSA 147 (411)
Q Consensus 80 -----~i~~v~~-------~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 147 (411)
.+.+++. .+..||++++++-+.++.+...+.++++.||+++..|+.+++++|.+.++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 3444432 2466999999999998887779999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEcCCCCceeEEeccCCC-cccC-cccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCC
Q 015225 148 ESAHQFGELIADPNTKELLHYTEKPET-FVSD-LINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTL 224 (411)
Q Consensus 148 ~~~~~~g~v~~d~~~~~v~~~~e~~~~-~~~~-~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (411)
++++.||.+..| ++++|++|.|||.. +.++ ++.+|+|+|+.++|. .|.+... -
T Consensus 159 ~eas~fGim~~D-~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~-----------------------~ 214 (393)
T COG0448 159 EEASRFGVMNVD-ENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAK-----------------------D 214 (393)
T ss_pred HhhhhcCceEEC-CCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhc-----------------------c
Confidence 999999999999 89999999999977 4444 799999999998764 4443321 1
Q ss_pred CCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCC-CCCCcEEcCCcEECCCC
Q 015225 225 PVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGN-GITSATIAGDVYIHPSA 303 (411)
Q Consensus 225 ~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 303 (411)
+.+..+|..++++.+.+.+.+++|++.|||.||+|.+.|++||+++++.-.. -.+....+ .-+.....+|+++..++
T Consensus 215 ~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~--~~lyd~~w~IyT~~~~~pPak~~~~s 292 (393)
T COG0448 215 PNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPE--LNLYDRNWPIYTKNKNLPPAKFVNDS 292 (393)
T ss_pred cCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCc--ccccCCCCceeecCCCCCCceEecCc
Confidence 2356677799999999999999999999999999999999999999882211 01111110 01233334444444333
Q ss_pred -----EECCCCEECC---CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 304 -----KVHPTAKIGP---NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 304 -----~v~~~~~i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.|+.||+|.+ +|+|+.+++|+++|+|.+|+|+.+|.||+||+|.++||..+|.|+++++|+++
T Consensus 293 ~v~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 293 EVSNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eEeeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 3445555553 56777777777777777777777777777777777777777777777777765
No 7
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.4e-49 Score=385.35 Aligned_cols=331 Identities=21% Similarity=0.345 Sum_probs=258.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc--cC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN--EL 77 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~--~~ 77 (411)
|++++||||||| +|+||+|+|..+||+|+|++|+ |||+|+|++|.++ |+++|+|++++..+.+++|+.+.+. .+
T Consensus 1 m~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~ 77 (429)
T PRK02862 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGF 77 (429)
T ss_pred CCcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCcccc
Confidence 899999999999 9999999999999999999999 9999999999997 9999999999988899999975321 01
Q ss_pred Ccc-eEEe--eCC-----CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCccc
Q 015225 78 KVP-VRYL--KED-----KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAES 149 (411)
Q Consensus 78 ~~~-i~~v--~~~-----~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (411)
... +.+. .+. ...||+++++.+++++.+..+++|+|++||++++.++..+++.|++.++++|+++.+.+.++
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 111 2221 121 12799999999999986433478999999999999999999999988888898887765456
Q ss_pred ccceeEEEEcCCCCceeEEeccCCCc---------------------ccCcccceEEEeCHHHHHHh-hhhhhccccccc
Q 015225 150 AHQFGELIADPNTKELLHYTEKPETF---------------------VSDLINCGVYVFTPDFFTAI-QGVLTHREDRAN 207 (411)
Q Consensus 150 ~~~~g~v~~d~~~~~v~~~~e~~~~~---------------------~~~~~~~Giyi~~~~~~~~l-~~~~~~~~~~~~ 207 (411)
+..||++..| ++++|..|.|||... ..+++++|+|+|++++|..+ .+..
T Consensus 158 ~~~yG~i~~d-~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-------- 228 (429)
T PRK02862 158 ASGFGLMKTD-DDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-------- 228 (429)
T ss_pred cccceEEEEC-CCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC--------
Confidence 7889999998 688999999998632 23588999999999998543 3311
Q ss_pred ccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCcccccc---
Q 015225 208 IRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLAS--- 284 (411)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~--- 284 (411)
+..++..++++.+++++++++|..++||.++++|++|+++++.++....... .++..
T Consensus 229 -------------------~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~-~~~~~~~~ 288 (429)
T PRK02862 229 -------------------EYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPF-SFYDEKAP 288 (429)
T ss_pred -------------------ChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcc-cccCCCCc
Confidence 1123436888888888899999999999999999999999999873221100 00000
Q ss_pred ----CCC-C----CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECC-------------------
Q 015225 285 ----GNG-I----TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLD------------------- 336 (411)
Q Consensus 285 ----~~~-~----~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~------------------- 336 (411)
... + ..+.+. +++||+++.| +++.|. +++||++|.||++|+|.+|+|+.
T Consensus 289 i~~~~~~~~~a~~~~~~~~-~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~ 365 (429)
T PRK02862 289 IYTRARYLPPSKLLDATIT-ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKP 365 (429)
T ss_pred eeccCCCCCCccccccEEE-eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCc
Confidence 000 0 133333 4688888888 778886 68888888888888888888875
Q ss_pred CCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 337 DVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 337 ~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+|.||++|.|.+|+|+++|.||+++++.+.
T Consensus 366 ~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 366 PLGIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred ccEECCCCEEEEEEECCCcEECCCcEEecC
Confidence 688888888888888888888888888764
No 8
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.4e-48 Score=384.88 Aligned_cols=330 Identities=20% Similarity=0.336 Sum_probs=262.8
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|++|+||||||| +|+||+|+|..+||||+|++|+ |||+|+|++|.++ |+++|+|++++..+.+++|++..+. |+.
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~-~~~ 76 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYN-FGN 76 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCC-CCC
Confidence 899999999999 9999999999999999999997 9999999999997 9999999999999999999986321 221
Q ss_pred c-------eEEe--eCC-----CCCCChHHHHHHHHHhhccC---CCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEE
Q 015225 80 P-------VRYL--KED-----KPHGSAGGLYYFRDMIMEEN---PSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLV 142 (411)
Q Consensus 80 ~-------i~~v--~~~-----~~~g~~~~l~~~~~~i~~~~---~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~ 142 (411)
. +.+. .+. +..|++++++.++.++.+.. +++|++++||.+++.++.+++++|+++++++|+++
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~ 156 (436)
T PLN02241 77 GGNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIAC 156 (436)
T ss_pred CcccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEE
Confidence 1 2222 221 35799999999887765322 47899999999999999999999999999999999
Q ss_pred EecCcccccceeEEEEcCCCCceeEEeccCCCcc---------------------cCcccceEEEeCHHHHHHh-hhhhh
Q 015225 143 IKVSAESAHQFGELIADPNTKELLHYTEKPETFV---------------------SDLINCGVYVFTPDFFTAI-QGVLT 200 (411)
Q Consensus 143 ~~~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~---------------------~~~~~~Giyi~~~~~~~~l-~~~~~ 200 (411)
.++..+++..||++..| ++++|+.+.|||..+. .++.++|+|+|++++|..+ .+..+
T Consensus 157 ~~v~~~~~~~ygvv~~d-~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~ 235 (436)
T PLN02241 157 LPVDESRASDFGLMKID-DTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFP 235 (436)
T ss_pred EecchhhcCcceEEEEC-CCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcc
Confidence 88754567889999998 7889999999985432 3789999999999998544 43211
Q ss_pred cccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC-CceEEEeecceeeecCCccchhhcchHHHhhhhhcCc
Q 015225 201 HREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSP 279 (411)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~ 279 (411)
. ...+..++++.++.+ .++++|..++||.++++|++|+++++.++..... .
T Consensus 236 ~--------------------------~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~--~ 287 (436)
T PLN02241 236 T--------------------------ANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPK--F 287 (436)
T ss_pred c--------------------------ccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCch--h
Confidence 0 012337889988877 4899999999999999999999999999874321 1
Q ss_pred cccccC-------CC-C----CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECC-----------
Q 015225 280 QLLASG-------NG-I----TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLD----------- 336 (411)
Q Consensus 280 ~~~~~~-------~~-~----~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~----------- 336 (411)
.++... .. + .++.+.+ ++|+++++|+ +|.|+ +++|+++|.||++|+|.+|+|+.
T Consensus 288 ~~~~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~ 364 (436)
T PLN02241 288 SFYDPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIA 364 (436)
T ss_pred hccCCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCccccccccc
Confidence 111110 00 0 2333333 6788888888 88886 78999999999999999988866
Q ss_pred -----C---CEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 337 -----D---VEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 337 -----~---~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+ ++|+++|.+.+++|+++|.||+++.+.+.
T Consensus 365 ~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~ 402 (436)
T PLN02241 365 SLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINK 402 (436)
T ss_pred cccccCCcceEECCCCEEcceEecCCCEECCCcEEecc
Confidence 2 38999999999999999999999988764
No 9
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.6e-48 Score=374.46 Aligned_cols=345 Identities=22% Similarity=0.316 Sum_probs=284.8
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEeccc-chHHHHHHHhhhcccCCcceEE
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY-EEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+||||||| .|+||+|+|..+||+|+|++|+|||+|++++|.+. ++++|++++++ ..+.+.+++++. ..|+.++.+
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~ 76 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITY 76 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEE
Confidence 58999999 99999999999999999999999999999999997 99999998888 888899998763 457777888
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
+.+....|++++++.+++++. .++|++++||.+++.++.++++.|.++++++++++.+. .++..|+.+..| +++
T Consensus 77 ~~~~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~~~~~-~~~ 150 (353)
T TIGR01208 77 IVQGEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKV--RDPTAFGVAVLE-DGK 150 (353)
T ss_pred EECCCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEEC--CChhhCeEEEEc-CCC
Confidence 777778899999999999885 46899999999999999999999998899989888876 567789988877 567
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 243 (411)
+|..+.|+|..+.+.+.++|+|+|++.+++.+.+..+.. .+.+.+ .++++.+++++
T Consensus 151 ~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~-----------------------~~e~~l-~d~l~~l~~~g 206 (353)
T TIGR01208 151 RILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW-----------------------RGELEI-TDAIQWLIEKG 206 (353)
T ss_pred cEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC-----------------------CCcEEH-HHHHHHHHHcC
Confidence 899999999877788999999999998888876532110 122334 78899888765
Q ss_pred -ceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCcE
Q 015225 244 -QLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVR 322 (411)
Q Consensus 244 -~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~ 322 (411)
++++|..+++|.+|++|++|+++++.++.+.... +. + ..+.+.+.++++|++++.| +++.|.++++||++|.
T Consensus 207 ~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~---~~--~-i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~ 279 (353)
T TIGR01208 207 YKVGGSKVTGWWKDTGKPEDLLDANRLILDEVERE---VQ--G-VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCI 279 (353)
T ss_pred CeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccc---cC--C-cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCE
Confidence 7999999999999999999999999998753221 11 1 2345677788888888888 7788877888888888
Q ss_pred ECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCc-EEecCCcCCcccceeEECCCCEECCCcEEc---ceEEcC
Q 015225 323 VGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWA-RVQGNGDYNAKLGITILGEAVTVEDEVVVI---NSIVLP 397 (411)
Q Consensus 323 i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~-~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~---~~~i~~ 397 (411)
|+ ++.|. +|+|+++|.|+ +|.|.+|+|++++.|+.++ ++.+ +++++++.|+.++.+. +.++|.
T Consensus 280 I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~----------~ii~~~~~i~~~~~~~~~~~~~~g~ 347 (353)
T TIGR01208 280 IE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVD----------SVIGKKVRIKGNRRRPGDLRLTIGD 347 (353)
T ss_pred Ec-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeec----------CEEcCCCEECCCcccccccceEEcC
Confidence 87 44444 67777777776 6777889999999998884 7766 8999999999999884 467887
Q ss_pred CCEEc
Q 015225 398 NKVLN 402 (411)
Q Consensus 398 ~~~v~ 402 (411)
.++|.
T Consensus 348 ~~~~~ 352 (353)
T TIGR01208 348 YSQVE 352 (353)
T ss_pred Cceec
Confidence 77663
No 10
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1e-47 Score=377.15 Aligned_cols=337 Identities=18% Similarity=0.284 Sum_probs=248.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcc-hhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhccc---
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQP-MIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNE--- 76 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~p-li~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~--- 76 (411)
|++++||||||| +|+||+|+|..+||+|+|++|+| ||+|+|++|.++ |+++|+|++++..+.+.+|+.+.+..
T Consensus 13 ~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 89 (425)
T PRK00725 13 TRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFRE 89 (425)
T ss_pred hcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhccccc
Confidence 367999999999 99999999999999999999996 999999999997 99999999999999999999763211
Q ss_pred -CCcceEEee-------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcc
Q 015225 77 -LKVPVRYLK-------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAE 148 (411)
Q Consensus 77 -~~~~i~~v~-------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 148 (411)
.+..+.+.. +.+..||+++++.+++++....+++|+|++||++++.++.+++++|.++++++++++.+.+.+
T Consensus 90 ~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 90 ELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 011122221 223579999999999999643357899999999999999999999999999899888776556
Q ss_pred cccceeEEEEcCCCCceeEEeccCCCc-------ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhc
Q 015225 149 SAHQFGELIADPNTKELLHYTEKPETF-------VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSA 220 (411)
Q Consensus 149 ~~~~~g~v~~d~~~~~v~~~~e~~~~~-------~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (411)
++..||++..| ++++|..|.|||..+ .+.++++|+|+|++++| +.|.+.....
T Consensus 170 ~~~~yG~v~~d-~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~------------------ 230 (425)
T PRK00725 170 EASAFGVMAVD-ENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDP------------------ 230 (425)
T ss_pred hcccceEEEEC-CCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCC------------------
Confidence 77899999998 678999999998643 25789999999999976 5565421100
Q ss_pred ccCCCCceeeeccchhhcccCCCceEEEeec-----------ceeeecCCccchhhcchHHHhhhhhc-----Ccccccc
Q 015225 221 TRTLPVDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSSLYLALFKIT-----SPQLLAS 284 (411)
Q Consensus 221 ~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~-----------~~~~~I~t~~d~~~a~~~~l~~~~~~-----~~~~~~~ 284 (411)
.+..++.+|+++.+++++++++|... +||.|+++|++|+++++.++...... ...+..+
T Consensus 231 -----~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~ 305 (425)
T PRK00725 231 -----NSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTY 305 (425)
T ss_pred -----CccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccC
Confidence 11223447999999988899999875 59999999999999999998632110 0000000
Q ss_pred CCC-CC--------Cc-EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCC
Q 015225 285 GNG-IT--------SA-TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWK 354 (411)
Q Consensus 285 ~~~-~~--------~~-~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~ 354 (411)
... ++ ++ ....+++|++++.| ++|.|. +|+||++|.||++|+|.+|+|+++|.||++|.|.+|+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 306 QEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 000 00 00 11224566666666 566665 56777777777777777777777777777777777777777
Q ss_pred CEECCCcEEecC
Q 015225 355 SSLGRWARVQGN 366 (411)
Q Consensus 355 ~~ig~~~~i~~~ 366 (411)
+.|+++++|+.+
T Consensus 384 ~~i~~~~~i~~~ 395 (425)
T PRK00725 384 CVIPEGMVIGED 395 (425)
T ss_pred CEECCCCEECCC
Confidence 666666666543
No 11
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=7.4e-48 Score=373.47 Aligned_cols=346 Identities=17% Similarity=0.270 Sum_probs=262.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchH-HHHHHHhhhcccCCc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEER-EFALYVSSISNELKV 79 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~-~i~~~~~~~~~~~~~ 79 (411)
..|+||||||| +|+||+|||..+||||+||+|+ |||+|+|++|.++ |+++|+|++++..+ .+++|+.+. ..|+.
T Consensus 1 ~~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~ 76 (369)
T TIGR02092 1 NKMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSG-REWDL 76 (369)
T ss_pred CcEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCC-CCCCc
Confidence 36899999999 9999999999999999999999 9999999999997 99999999998775 899999763 34665
Q ss_pred ce------EEeeCCC-CC--CChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccc
Q 015225 80 PV------RYLKEDK-PH--GSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 80 ~i------~~v~~~~-~~--g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (411)
++ .++.++. .. |++++++.+++++....+++|+|++||++++.++.+++++|+++++++|+++.++..+++
T Consensus 77 ~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 77 HRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred ccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 43 2223322 32 556678888888853234789999999999999999999999999999999988733356
Q ss_pred cceeE-EEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCce
Q 015225 151 HQFGE-LIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDF 228 (411)
Q Consensus 151 ~~~g~-v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (411)
..||. +..| +++++..+.+++........++|+|+|+++++ +.+.+.... ...
T Consensus 157 ~~~g~vv~~~-~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~------------------------~~~ 211 (369)
T TIGR02092 157 SEYDTILRFD-ESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQR------------------------GKL 211 (369)
T ss_pred cccCcEEEEc-CCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhc------------------------Ccc
Confidence 77854 4566 56788777543322234567899999999865 444332111 011
Q ss_pred eeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCC--CCCcEEcCCcEECCCCEEC
Q 015225 229 VRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNG--ITSATIAGDVYIHPSAKVH 306 (411)
Q Consensus 229 ~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~v~ 306 (411)
..+ .++++.++.+++++++..+++|.|++|+++|+++++.+++.+... ..+..... .....+.++++ |+
T Consensus 212 ~~~-~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~------i~ 282 (369)
T TIGR02092 212 TSL-EELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTKVKDEPPTY------YA 282 (369)
T ss_pred ccH-HHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeeccCCCCCcE------Ec
Confidence 112 578888877779999999999999999999999999998775421 11101000 00111224444 44
Q ss_pred CCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 307 PTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 307 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
++|.| ++++||++|.|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++++.+ |+||++++|++
T Consensus 283 ~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~----------~ii~~~~~v~~ 349 (369)
T TIGR02092 283 ENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN----------VIIDKDVVIEP 349 (369)
T ss_pred CCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE----------EEECCCCEECC
Confidence 55555 478899999996 468999999999999999999999999999999999988 99999999999
Q ss_pred CcEEcceEEcCC
Q 015225 387 EVVVINSIVLPN 398 (411)
Q Consensus 387 ~~~v~~~~i~~~ 398 (411)
++.+.+..+.|.
T Consensus 350 ~~~~~~~~~~~~ 361 (369)
T TIGR02092 350 NVKIAGTSEQPL 361 (369)
T ss_pred CCEeCCCCCccE
Confidence 988866654443
No 12
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-47 Score=352.68 Aligned_cols=352 Identities=21% Similarity=0.328 Sum_probs=295.6
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
+++.+|||||| +|+||.+ ..||.|.|++|+||++|+++....+ +.+++.+|.++..+.+++.+.+. . ++
T Consensus 1 ~~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~----~-~v 69 (460)
T COG1207 1 MSLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAER----D-DV 69 (460)
T ss_pred CCceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccc----c-Cc
Confidence 35889999999 9999998 9999999999999999999999998 89999999898888888887751 1 68
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.|+.|.++.||+++++++++++.+..++++||++||++. ...|..+++.|...++.++++++.. .+|..||++..+
T Consensus 70 ~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~ 147 (460)
T COG1207 70 EFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRD 147 (460)
T ss_pred eEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEc
Confidence 999999999999999999999954446789999999985 5668999999999999999999998 999999999999
Q ss_pred CCCCceeEEeccCCC----cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 160 PNTKELLHYTEKPET----FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
++++|..+.|..+. ..-...|+|+|+|+.. ++++|.+ ..+.+++.+||| +|
T Consensus 148 -~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~----l~nnNaqgEYYL-------------------TD 203 (460)
T COG1207 148 -GNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPK----LSNNNAQGEYYL-------------------TD 203 (460)
T ss_pred -CCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHH----hccccccCcEeH-------------------HH
Confidence 78899999987542 3467889999999986 5556554 344566677776 77
Q ss_pred hhhcccCC-CceEEEeeccee--eecCCccchhhcchHHHhhhhhcCccccccC---CCCCCcEEcCCcEECCCCEECCC
Q 015225 235 ILSPLAGK-KQLYTYETMDFW--EQIKTPGMSLKCSSLYLALFKITSPQLLASG---NGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 235 ~l~~l~~~-~~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
++..+-+. .++.++...++. .-+++-..+-.+.+.+.++... .++..+ -.+...++.+.+.||+++.|.++
T Consensus 204 vI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~---~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~ 280 (460)
T COG1207 204 VIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAE---KLMLAGVTLIDPATTYIRGDVEIGRDVVIEPN 280 (460)
T ss_pred HHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHH---HHHHcCcEEeCCCeEEEcCcEEECCceEEecC
Confidence 77766544 478888777643 4456666777777766655533 222222 12457788999999999999999
Q ss_pred CEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCc
Q 015225 309 AKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEV 388 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 388 (411)
+.|.+++.||++|+||++|+|.||.|++++.|..+|+|.+|.+++++.||+++++.++ +.|+++++||..+
T Consensus 281 v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg---------~~L~~~~hIGNFV 351 (460)
T COG1207 281 VILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPG---------AVLGADVHIGNFV 351 (460)
T ss_pred cEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCc---------CcccCCCeEeeeE
Confidence 9999999999999999999999999999999999999999999999999999999999 8888888888888
Q ss_pred EEcceEEcCCCEEc
Q 015225 389 VVINSIVLPNKVLN 402 (411)
Q Consensus 389 ~v~~~~i~~~~~v~ 402 (411)
.++++.||.|+.+.
T Consensus 352 EvK~a~ig~gsKa~ 365 (460)
T COG1207 352 EVKKATIGKGSKAG 365 (460)
T ss_pred EEecccccCCcccc
Confidence 88888888777664
No 13
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=7e-47 Score=365.86 Aligned_cols=340 Identities=21% Similarity=0.336 Sum_probs=268.3
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccC---Ccce
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNEL---KVPV 81 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~---~~~i 81 (411)
||||||| +|+||+|+|..+||+|+|++|+ |||+|++++|.++ |+++|+|+++++.+.+.+++.+.+... ...+
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFV 77 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCE
Confidence 6999999 9999999999999999999999 8999999999997 999999999988888999987532110 1123
Q ss_pred EEee-------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 82 RYLK-------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 82 ~~v~-------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
++.. +....|++++++.+++++....+++|++++||++++.++.++++.|++.++++++++.+.+.+++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 4322 122479999999999988543347899999999999999999999988888888888776556778899
Q ss_pred EEEEcCCCCceeEEeccCCCcccC-------cccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCC
Q 015225 155 ELIADPNTKELLHYTEKPETFVSD-------LINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPV 226 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~~~~~~~-------~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
++..| ++++|..+.|||..+... +.++|+|+|+++++ +.+.+..... .
T Consensus 158 ~v~~d-~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-----------------------~ 213 (361)
T TIGR02091 158 VMQVD-EDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDP-----------------------E 213 (361)
T ss_pred EEEEC-CCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcC-----------------------C
Confidence 99998 678999999998655444 78999999999987 4444321110 0
Q ss_pred ceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEE-cCCcEECCCCEE
Q 015225 227 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATI-AGDVYIHPSAKV 305 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~v 305 (411)
...++..++++.+++++++++|..+++|.|++++++|+++++.++.+..... .... ...+ ....++.+.+++
T Consensus 214 ~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~i 286 (361)
T TIGR02091 214 SSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDR-----KWPIYTYNEFLPPAKFV 286 (361)
T ss_pred cccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--cccc-----CCceecCCCCCCCceEe
Confidence 1122336889999988899999999999999999999999999987543211 1110 0000 112244555566
Q ss_pred CCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEEC
Q 015225 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE 385 (411)
Q Consensus 306 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~ 385 (411)
++++.|. +++||++|+|+++ +|.+|+|+++|+|+++|+|.+|+|++++.||+++++.+ |+||++++|+
T Consensus 287 ~~~~~i~-~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~----------~ivg~~~~i~ 354 (361)
T TIGR02091 287 DSDAQVV-DSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN----------AIIDKNVRIG 354 (361)
T ss_pred cCCCEEE-CCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee----------eEECCCCEEC
Confidence 6666554 7899999999976 88999999999999999999999999999999999976 9999999999
Q ss_pred CCcEEc
Q 015225 386 DEVVVI 391 (411)
Q Consensus 386 ~~~~v~ 391 (411)
.++.+.
T Consensus 355 ~~~~i~ 360 (361)
T TIGR02091 355 EGVVIG 360 (361)
T ss_pred CCCEeC
Confidence 988764
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.9e-45 Score=364.13 Aligned_cols=345 Identities=21% Similarity=0.314 Sum_probs=276.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++++||||||| .|+||++ ..||+|+|++|+|||+|+|++|.++ +++++++++++..+.+.+++.+. ..
T Consensus 1 m~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~-----~~ 69 (459)
T PRK14355 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGD-----GD 69 (459)
T ss_pred CCcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccC-----Cc
Confidence 889999999999 9999986 8899999999999999999999997 99999999988877888888652 14
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.+....|++++++.+++++.+ ..++|++++||.+ .+.+++.+++.|.+.+++++++..+. .++..|+.+..
T Consensus 70 i~~~~~~~~~Gt~~al~~a~~~l~~-~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~ 146 (459)
T PRK14355 70 VSFALQEEQLGTGHAVACAAPALDG-FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVR 146 (459)
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc-cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEE
Confidence 6676677778999999999999852 1368999999984 46778999999988888888877776 66778898888
Q ss_pred cCCCCceeEEeccCCC----cccCcccceEEEeCHHH-HHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 159 DPNTKELLHYTEKPET----FVSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
| ++++|..+.|+|.. ..+++.++|+|+|++++ ++.+.+..+.. ..+.+.+ +
T Consensus 147 d-~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~ 202 (459)
T PRK14355 147 D-ADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDN----------------------AQGEYYL-T 202 (459)
T ss_pred c-CCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccc----------------------cCCceeH-H
Confidence 8 67899999987522 12468899999999986 45554432110 0122334 7
Q ss_pred chhhcccCCC-ceEEEeecce--eeecCCccchhhcchHHHhhhhhc----CccccccCCCCCCcEEcCCcEECCCCEEC
Q 015225 234 DILSPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSSLYLALFKIT----SPQLLASGNGITSATIAGDVYIHPSAKVH 306 (411)
Q Consensus 234 d~l~~l~~~~-~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~v~ 306 (411)
|+++.+++++ ++++|...++ |.++++|++|+++++.++...... ...+.. +....+.+++.||+++.|+
T Consensus 203 d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~----~~~~~i~~~v~ig~~~~I~ 278 (459)
T PRK14355 203 DIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID----PETTYIDRGVVIGRDTTIY 278 (459)
T ss_pred HHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCceEECCCeEEcCCCEEe
Confidence 8999998776 7999999887 899999999999987665443211 111111 1234688899999999999
Q ss_pred CCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 307 PTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 307 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
++|.|+++++||++|.|+++|+|.+|+||++|+|+.+|++.+++|++++.||+++.+..+ ++|+++++||.
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~---------~~i~~~~~ig~ 349 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG---------TELSAHVKIGN 349 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC---------CEeCCCCEECC
Confidence 999999999999999999999999999999999999999999999999999999999887 77777777776
Q ss_pred CcEEcceEEc
Q 015225 387 EVVVINSIVL 396 (411)
Q Consensus 387 ~~~v~~~~i~ 396 (411)
++.+++++|+
T Consensus 350 ~~~~~~~~ig 359 (459)
T PRK14355 350 FVETKKIVMG 359 (459)
T ss_pred CccccCCEEC
Confidence 6544333333
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.9e-44 Score=356.86 Aligned_cols=323 Identities=18% Similarity=0.257 Sum_probs=255.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.||||||| +|+||++ .+||+|+|++|+|||+|++++|.++ +++++++++++..+.+.+++... ...+.
T Consensus 4 ~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~~~~~ 73 (482)
T PRK14352 4 PTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAEL----APEVD 73 (482)
T ss_pred CceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhcc----CCccE
Confidence 5789999999 9999997 7899999999999999999999997 89999988887777777777652 22356
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
++.++...|++++++.+++++....+++|++++||.+ ...++..+++.|++.+.+++++..+. .++..|+.+..|
T Consensus 74 ~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~- 150 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRD- 150 (482)
T ss_pred EEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEEC-
Confidence 6667777899999999999885333477999999996 35679999999988877777777766 778889998887
Q ss_pred CCCceeEEeccCCCcc----cCcccceEEEeCHHHHHH-hhhhhhcccccccccccchhhhhhhcccCCCCceeeeccch
Q 015225 161 NTKELLHYTEKPETFV----SDLINCGVYVFTPDFFTA-IQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDI 235 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~----~~~~~~Giyi~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 235 (411)
++++|.++.|||.... ..++++|+|+|++++|.. +.+..+.. ..+.+.+ +|+
T Consensus 151 ~~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~l-~d~ 207 (482)
T PRK14352 151 QDGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDN----------------------AQGELYL-TDV 207 (482)
T ss_pred CCCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccc----------------------cCCcEeH-HHH
Confidence 6789999999986432 456899999999998854 33322110 0122334 899
Q ss_pred hhcccCCC-ceEEEeecceeeecCCccch------hhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCC
Q 015225 236 LSPLAGKK-QLYTYETMDFWEQIKTPGMS------LKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 236 l~~l~~~~-~v~~~~~~~~~~~I~t~~d~------~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
++.+++.+ ++++|..+++|.++++++++ +.+++.+++.+......... +..+.+.++++||+++.|+++
T Consensus 208 i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~----~~~~~i~~~v~ig~~~~I~~~ 283 (482)
T PRK14352 208 LAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD----PATTWIDVDVTIGRDVVIHPG 283 (482)
T ss_pred HHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCeEEEeCCEEECCCcEEeCC
Confidence 99998776 89999999999999998877 44454445444333222222 135678899999999999999
Q ss_pred CEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 309 AKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
|.|.++++||++|.|+++|+|.+|+||++|.|+. +.+.+++|++++.||+++.+..+
T Consensus 284 ~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~ 340 (482)
T PRK14352 284 TQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPG 340 (482)
T ss_pred cEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCC
Confidence 9999999999999999999999999999999874 77778888888888888777655
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-43 Score=352.79 Aligned_cols=338 Identities=19% Similarity=0.275 Sum_probs=266.5
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++|+||||||| +|+||++ ..||+|+|++|+|||+|++++|.++ ++++|+|++++..+.+++++.. ..+
T Consensus 6 ~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~------~~i 73 (481)
T PRK14358 6 RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQG------SGV 73 (481)
T ss_pred CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcc------CCc
Confidence 36999999999 9999997 6899999999999999999999997 9999999998877778887753 246
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.++.++...|++++++.+++++.. .+++|++++||.+ .+.+++.+++.|.++++++++++.+. .+++.||.+..|
T Consensus 74 ~~v~~~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~--~~~~~yG~v~~d 150 (481)
T PRK14358 74 AFARQEQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGEL--PDATGYGRIVRG 150 (481)
T ss_pred EEecCCCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCceEEEEC
Confidence 777777778999999999998842 2356999999985 36679999999998888888888877 567789999998
Q ss_pred CCCCceeEEeccCCCcc----cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccch
Q 015225 160 PNTKELLHYTEKPETFV----SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDI 235 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~----~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 235 (411)
++++|..|.|||.... .+++++|+|+|++++++.+....... ..+.+.+ +|+
T Consensus 151 -~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~----------------------~~ge~~l-~d~ 206 (481)
T PRK14358 151 -ADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDN----------------------KAGEYYL-TDL 206 (481)
T ss_pred -CCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCc----------------------cCCeEEH-HHH
Confidence 7789999999876432 35689999999977655554322110 1123445 789
Q ss_pred hhcccCCC-ceEEEeecceeeecCCccchhhcchH-HHhhhhhcCccccccC---CCCCCcEEcCCcEECCCCEECCCCE
Q 015225 236 LSPLAGKK-QLYTYETMDFWEQIKTPGMSLKCSSL-YLALFKITSPQLLASG---NGITSATIAGDVYIHPSAKVHPTAK 310 (411)
Q Consensus 236 l~~l~~~~-~v~~~~~~~~~~~I~t~~d~~~a~~~-~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~v~~~~~ 310 (411)
++.+++++ ++++|...++|..++....++.++.. +++...... ....+ ..+....+.++++||+++.|+++|+
T Consensus 207 i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~ 284 (481)
T PRK14358 207 LGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEA--HMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVL 284 (481)
T ss_pred HHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHhCCCEEecCCeeeccCCcEECCCCEEeCCcE
Confidence 99888776 69999988888888777666555433 443322110 01110 0122344578899999999999999
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVV 389 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ 389 (411)
|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++||+++.||+++.+..+ ++||+++.|+.++.
T Consensus 285 I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~---------~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 285 LRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPG---------TVLGEGVHIGNFVE 354 (481)
T ss_pred EeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCC---------cEECCCCEECCCEE
Confidence 99999999999999999999999999999999999999999999999999999876 67777777776544
No 17
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.5e-43 Score=351.43 Aligned_cols=349 Identities=17% Similarity=0.224 Sum_probs=268.4
Q ss_pred CC-ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 1 ME-KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~-~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|+ .+.||||||| +|+||+. ..||+|+|++|+|||+|++++|... +++++++++++..+.+.+++.. .
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~------~ 69 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPD------E 69 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccc------c
Confidence 54 4779999999 9999984 8899999999999999999999997 8999998888777777766643 2
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
.+.++.++...|++++++.+++++.....+++++++||+++ ..++..+++.|. +++++++..+. .++..||.+.
T Consensus 70 ~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~--~~~~~~g~v~ 145 (456)
T PRK14356 70 DARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL--PDPGAYGRVV 145 (456)
T ss_pred CceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc--CCCCCceEEE
Confidence 45666667778999999999999864345789999999953 566889888775 55677777777 6778899887
Q ss_pred EcCCCCceeEEeccCCC------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeee
Q 015225 158 ADPNTKELLHYTEKPET------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRL 231 (411)
Q Consensus 158 ~d~~~~~v~~~~e~~~~------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (411)
.+ +++|..+.|+++. +.+.+.++|+|+|++++++.+.+.+... ...+.+.+
T Consensus 146 ~~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~---------------------~~~~e~~l 202 (456)
T PRK14356 146 RR--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNA---------------------NKSGEYYI 202 (456)
T ss_pred Ec--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCc---------------------ccCCcEEH
Confidence 65 7899999998642 3456789999999999886554332111 01122334
Q ss_pred ccchhhcccCCC-ceEEEeecc--eeeecCCccchhhcchHHHhhhhhcCccccccCC---CCCCcEEcCCcEECCCCEE
Q 015225 232 DQDILSPLAGKK-QLYTYETMD--FWEQIKTPGMSLKCSSLYLALFKITSPQLLASGN---GITSATIAGDVYIHPSAKV 305 (411)
Q Consensus 232 ~~d~l~~l~~~~-~v~~~~~~~--~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~v 305 (411)
+++++.+.+.+ ++.++...+ .|.++++|+||.+++..+..+... .++..+. .+...++++++.|++++.|
T Consensus 203 -td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~---~~~~~~~~i~~~~~~~i~~~~~i~~~~~i 278 (456)
T PRK14356 203 -TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE---KHLESGVLIHAPESVRIGPRATIEPGAEI 278 (456)
T ss_pred -HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH---HHHHcCCEEeCCCcEEECCCcEECCCCEE
Confidence 78888877554 788888765 579999999999988666544321 1121111 1235677778888888888
Q ss_pred CCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEEC
Q 015225 306 HPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE 385 (411)
Q Consensus 306 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~ 385 (411)
..++.|.++++||++|.|+++|.|.+|+||++|+|+++|+|.+++|+++|.||++++|..+ ++||++++|+
T Consensus 279 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~ig~~~~ig 349 (456)
T PRK14356 279 YGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG---------AVLEEGARVG 349 (456)
T ss_pred eCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC---------CEECCCCEec
Confidence 8888888899999999999999999999999999999999999999999999999999866 7777777777
Q ss_pred CCcEEcceEEcCCCEE
Q 015225 386 DEVVVINSIVLPNKVL 401 (411)
Q Consensus 386 ~~~~v~~~~i~~~~~v 401 (411)
.++.+.++++++++.+
T Consensus 350 ~~~~i~~~~i~~~~~i 365 (456)
T PRK14356 350 NFVEMKKAVLGKGAKA 365 (456)
T ss_pred CCceeeeeEecCCcEe
Confidence 7766655555555444
No 18
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-43 Score=337.69 Aligned_cols=364 Identities=19% Similarity=0.311 Sum_probs=280.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhc--ccCCcc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSIS--NELKVP 80 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~--~~~~~~ 80 (411)
+++||+||.. +-+||+|+|...|++|||+.|.|||+|+|++|..+ |+++|+++++.+..++++|++++. ..+...
T Consensus 24 rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~ 100 (673)
T KOG1461|consen 24 RLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFI 100 (673)
T ss_pred ceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhhccccccccce
Confidence 5899999999 99999999999999999999999999999999997 999999999988889999998731 122323
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhc-----CCeeEEEEEecCcccccceeE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRY-----GGMGTMLVIKVSAESAHQFGE 155 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~ 155 (411)
+..+...+....+++++..-+. ....++|++++||++++.+|..++++|+.+ ++.|||+..+.+......--.
T Consensus 101 v~ti~s~~~~S~GDamR~id~k--~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~ 178 (673)
T KOG1461|consen 101 VVTICSGESRSVGDAMRDIDEK--QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVV 178 (673)
T ss_pred EEEEcCCCcCcHHHHHHHHHhc--ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceE
Confidence 4444445566778887665332 112599999999999999999999999654 367888887753112223345
Q ss_pred EEEcCCCCceeEEecc--CC----------------CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhh
Q 015225 156 LIADPNTKELLHYTEK--PE----------------TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEAL 217 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~--~~----------------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (411)
+.+|+.+++++.|.+. .. ....++.+++|-+|||+++..|.+++..+
T Consensus 179 ~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq--------------- 243 (673)
T KOG1461|consen 179 IAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQ--------------- 243 (673)
T ss_pred EEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccce---------------
Confidence 7788889999999851 10 13578999999999999999998765321
Q ss_pred hhcccCCCCceeeeccchhhcccCCCceEEEeecc--eeeecCCccchhhcchHHHhhhhhcC-ccccccCCCCCCcEEc
Q 015225 218 QSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMD--FWEQIKTPGMSLKCSSLYLALFKITS-PQLLASGNGITSATIA 294 (411)
Q Consensus 218 ~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~--~~~~I~t~~d~~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 294 (411)
++ -+|...+|-.-+-+.+++++.... |..++.++..|...++++++||.++. |..-..+ ..+...-+
T Consensus 244 ---~r------~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~-~q~~~~~r 313 (673)
T KOG1461|consen 244 ---TR------DDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSG-NQTFSLER 313 (673)
T ss_pred ---eh------hhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCC-Cceeeecc
Confidence 11 012233333333456899988776 89999999999999999999998742 2221111 02223335
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
-++|-++.+.+.++|.++.+++||.++.||.++.|.||+||.||.||.||.|.+|.||++|+||+||+|..
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~--------- 384 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH--------- 384 (673)
T ss_pred cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee---------
Confidence 56778888888888888889999999999999999999999999999999999999999999999999988
Q ss_pred eeEECCCCEECCCcEE-cceEEcCCCEEcCCCC
Q 015225 375 ITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~ 406 (411)
|+|+++++|+.|+.+ +||+++.+.+|+++.+
T Consensus 385 -aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~ 416 (673)
T KOG1461|consen 385 -AIICDDVKIGEGAILKPGSVLGFGVVVGRNFV 416 (673)
T ss_pred -eEeecCcEeCCCcccCCCcEEeeeeEeCCCcc
Confidence 899999999999888 6888888888877654
No 19
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-43 Score=319.20 Aligned_cols=362 Identities=18% Similarity=0.307 Sum_probs=252.8
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~ 79 (411)
|.+++|||+||| .|+||..++...|||||||+|+|||+|.|.+|.++ |+++++|++... .+.++..+.+. +.+
T Consensus 7 ~~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~---~~l 80 (433)
T KOG1462|consen 7 MSEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSN---IDL 80 (433)
T ss_pred hHHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcC---Ccc
Confidence 678999999999 99999999999999999999999999999999997 999999998863 45666777553 222
Q ss_pred c-----eEEee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecC-------
Q 015225 80 P-----VRYLK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVS------- 146 (411)
Q Consensus 80 ~-----i~~v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~------- 146 (411)
+ +++-. .....||+++|+..-..+. .++||+++||.+++.++..++++++..++...++....-
T Consensus 81 ~~~~~~v~ip~~~~~d~gtadsLr~Iy~kik---S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pg 157 (433)
T KOG1462|consen 81 KKRPDYVEIPTDDNSDFGTADSLRYIYSKIK---SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPG 157 (433)
T ss_pred cccccEEEeecccccccCCHHHHhhhhhhhc---cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccC
Confidence 2 22221 1235699999999999887 579999999999999999999999977765444444321
Q ss_pred -c-ccccceeEEEEcCCCCceeEEecc-----------------CC-CcccCcccceEEEeCHHHHHHhhhhhhcccccc
Q 015225 147 -A-ESAHQFGELIADPNTKELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRA 206 (411)
Q Consensus 147 -~-~~~~~~g~v~~d~~~~~v~~~~e~-----------------~~-~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~ 206 (411)
+ +..+.+..+..+.++.|+...... |. +..+++.++++|+|+.++++.|.+...-.+-+.
T Consensus 158 qk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~ 237 (433)
T KOG1462|consen 158 QKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKA 237 (433)
T ss_pred cccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecc
Confidence 1 122334455566456676655432 11 235889999999999999999986543333233
Q ss_pred cccccchhhhhhhcccCCCCceeeec--cchhhccc-----CCCceEEEeec--ceeeecCCccchhhcch--HHHhhhh
Q 015225 207 NIRQVSSFEALQSATRTLPVDFVRLD--QDILSPLA-----GKKQLYTYETM--DFWEQIKTPGMSLKCSS--LYLALFK 275 (411)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~d~l~~l~-----~~~~v~~~~~~--~~~~~I~t~~d~~~a~~--~~l~~~~ 275 (411)
...+|-.-+|++-+.- ......++. ..+.+... .+-++++|... ..+.+++|+..|+++|+ .+.+...
T Consensus 238 ~f~P~lvkkQ~q~~~~-~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~ 316 (433)
T KOG1462|consen 238 DFLPYLVKKQFQKNPP-LKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCS 316 (433)
T ss_pred cccchhhhhhhhcCCC-cccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhcc
Confidence 3333322223321000 000000000 01111111 12356655443 46778999999999995 2222111
Q ss_pred hcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCC
Q 015225 276 ITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKS 355 (411)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~ 355 (411)
+. .+ + .+. +...+.++..+++|++|.|++++.|+.|+||++|.||+.|+|.+|+|++++
T Consensus 317 e~--~~-----------------~-k~~-~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV 375 (433)
T KOG1462|consen 317 EA--KF-----------------V-KNY-VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNV 375 (433)
T ss_pred cc--cc-----------------c-cch-hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCc
Confidence 10 00 0 110 011145556788899999999999999999999999999999999999999
Q ss_pred EECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 356 SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 356 ~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
+||++|+|.+ |+||++|+||+|+.+.+|.||+|.+|+.
T Consensus 376 ~vg~G~~Ien----------sIIg~gA~Ig~gs~L~nC~Ig~~yvVea 413 (433)
T KOG1462|consen 376 VVGDGVNIEN----------SIIGMGAQIGSGSKLKNCIIGPGYVVEA 413 (433)
T ss_pred EecCCcceec----------ceecccceecCCCeeeeeEecCCcEEcc
Confidence 9999999998 9999999999999999999999999984
No 20
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=4.7e-42 Score=342.26 Aligned_cols=343 Identities=21% Similarity=0.304 Sum_probs=263.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| +|+||++ ..||+|+|++|+|||+|++++|.++ +++++++++++..+.+.+++.+ + .+.+
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~----~--~i~~ 68 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALAN----R--DVNW 68 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcC----C--CcEE
Confidence 789999999 9999997 7899999999999999999999997 9999998888887778887765 2 3455
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. .++|++++||.+ .+.++..+++.|.+. .+++++.+. +++..|+.+..| +
T Consensus 69 ~~~~~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d-~ 141 (451)
T TIGR01173 69 VLQAEQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIRE-N 141 (451)
T ss_pred EEcCCCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEc-C
Confidence 5555567999999999998852 368999999995 356789999888654 356666666 566779988888 6
Q ss_pred CCceeEEeccCCCc----ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPETF----VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
+++|..+.|+|... ...+.++|+|+|++++| +.+.+..+.. ..+.+.+ .+++
T Consensus 142 ~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~~~~ 198 (451)
T TIGR01173 142 DGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNN----------------------AQGEYYL-TDVI 198 (451)
T ss_pred CCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhccccc----------------------ccCcEeH-HHHH
Confidence 78999999986432 23467899999999874 5454321110 0122334 6888
Q ss_pred hcccCCC-ceEEEeecce--eeecCCccchhhcchHHHhhhhhc--CccccccCCCCCCcEEcCCcEECCCCEECCCCEE
Q 015225 237 SPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSSLYLALFKIT--SPQLLASGNGITSATIAGDVYIHPSAKVHPTAKI 311 (411)
Q Consensus 237 ~~l~~~~-~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i 311 (411)
+.+++++ +++.|...++ |.++++|+++..++..+..+.... .+.... ..+....+.+++.||+++.|+++|+|
T Consensus 199 ~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~ig~~~~i~~~~~i 276 (451)
T TIGR01173 199 ALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL--RDPARFDIRGTVEIGRDVEIDPNVIL 276 (451)
T ss_pred HHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--ecCCeEEECCccEECCCCEEcCCeEE
Confidence 8888775 7999998887 899999999988876554432211 011000 11235677889999999999999999
Q ss_pred CCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 312 GPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 312 ~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
.++++||++|.|+++|.|.+++|+++|.|+++|.|.+++|+++|.||++++|..+ ++|+++++|+.++.+.
T Consensus 277 ~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~Ig~~~~i~ 347 (451)
T TIGR01173 277 EGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPG---------SVLGAGVHIGNFVETK 347 (451)
T ss_pred eCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCC---------CEECCCcEEccceeec
Confidence 9999999999999999999999999999999999999999999999999999876 6777777666665554
Q ss_pred ceEEcCCC
Q 015225 392 NSIVLPNK 399 (411)
Q Consensus 392 ~~~i~~~~ 399 (411)
++.|+.++
T Consensus 348 ~~~ig~~~ 355 (451)
T TIGR01173 348 NARIGKGS 355 (451)
T ss_pred CcEECCCc
Confidence 44444433
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-41 Score=336.44 Aligned_cols=370 Identities=18% Similarity=0.211 Sum_probs=252.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.||||||| .|+||++ ..||+|+|++|+|||+|++++|..+ ++++++|++++..+.+.+++.+ ++.+
T Consensus 3 ~~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~----~~~~ 72 (446)
T PRK14353 3 DRTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAK----IAPD 72 (446)
T ss_pred cccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhc----cCCC
Confidence 778999999999 9999986 6899999999999999999999997 8999999988887778777754 2223
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.+....|++++++.+++++.. ..++|++++||.++ ...+..+++.+ +.+++++++..+. .++..|+.+..
T Consensus 73 ~~~~~~~~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~--~~~~~~g~~~~ 148 (446)
T PRK14353 73 AEIFVQKERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRA--ADPTGYGRLIV 148 (446)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEe--CCCCcceEEEE
Confidence 4455556678999999999998842 24789999999953 45577887744 4566777777776 66678888776
Q ss_pred cCCCCceeEEeccCCCc----ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 159 DPNTKELLHYTEKPETF----VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
+ +++|..+.|||... .+.+.++|+|+|+++.| +.+++..... ..+.+.+ +
T Consensus 149 ~--~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~ 203 (446)
T PRK14353 149 K--GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDN----------------------AKGEYYL-T 203 (446)
T ss_pred C--CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccC----------------------CCCcEeH-H
Confidence 5 67999999987431 23578899999998654 5554321100 0122334 6
Q ss_pred chhhcccCCC-ceEEEeec-ceeeecCCccchhhcchHHHhhhhh----cCccccccC--------CCCCCcEEcCCcEE
Q 015225 234 DILSPLAGKK-QLYTYETM-DFWEQIKTPGMSLKCSSLYLALFKI----TSPQLLASG--------NGITSATIAGDVYI 299 (411)
Q Consensus 234 d~l~~l~~~~-~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~i 299 (411)
+.++.+++.+ +++.+..+ ++|.+|++|+||..++..+.++... ....+.... ....++.+.++++|
T Consensus 204 d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I 283 (446)
T PRK14353 204 DIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVF 283 (446)
T ss_pred HHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEE
Confidence 8888887665 69999886 4799999999999998766544210 001111110 01134445555555
Q ss_pred CCCCEECCCCEECC-----CcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCE-----------ECCCcE
Q 015225 300 HPSAKVHPTAKIGP-----NVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSS-----------LGRWAR 362 (411)
Q Consensus 300 ~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~-----------ig~~~~ 362 (411)
++++.|+++|.|++ +++||++|+||++|.|. +|+||++|.||++|.+.+++|++++. ||++|.
T Consensus 284 ~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~ 363 (446)
T PRK14353 284 GPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGAN 363 (446)
T ss_pred CCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcE
Confidence 55555555555554 46677777777777776 67777777777777666555555432 333333
Q ss_pred EecCCcC-C---cccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 363 VQGNGDY-N---AKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 363 i~~~~~~-~---~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
|+.+... + .....++||++++||.++.| .+++|++|++|..++|+..
T Consensus 364 Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~ 421 (446)
T PRK14353 364 IGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDA 421 (446)
T ss_pred ECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCC
Confidence 3332110 0 00012677778777777766 5788899999999888754
No 22
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-41 Score=338.48 Aligned_cols=315 Identities=20% Similarity=0.301 Sum_probs=228.2
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|+||||||| .|+||++ ..||+|+|++|+|||+|+++.|..+ +++++++++++..+.+++++... +
T Consensus 3 ~~~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~------~ 70 (456)
T PRK09451 3 NSAMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADE------P 70 (456)
T ss_pred CCCceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccC------C
Confidence 568999999999 9999985 7899999999999999999999997 89999999887777777777541 4
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++.+....|++++++.+++++. .+++|++++||.+ .+.++..+++.|.+.+ +++++.+. +++..||++..
T Consensus 71 ~~~i~~~~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~ 144 (456)
T PRK09451 71 LNWVLQAEQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITR 144 (456)
T ss_pred cEEEECCCCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEe
Confidence 566667777899999999999874 2478999999995 4677889888875443 34555555 67778998754
Q ss_pred cCCCCceeEEeccCCCc----ccCcccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCCCCceeeecc
Q 015225 159 DPNTKELLHYTEKPETF----VSDLINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQ 233 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (411)
+ +++|.++.|||... .+++.++|+|+|+++.|. .+.+..... ..+.+.+ +
T Consensus 145 ~--~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~----------------------~~~e~~l-~ 199 (456)
T PRK09451 145 E--NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNN----------------------AQGEYYI-T 199 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCcc----------------------ccCceeH-H
Confidence 4 77999999998532 246889999999998774 444322110 0122334 7
Q ss_pred chhhcccCCC-ceEEEe------ecce--eeecCCccchhhcchH--HHhhhhhcCccccccCCCCCCcEEcCCcEECCC
Q 015225 234 DILSPLAGKK-QLYTYE------TMDF--WEQIKTPGMSLKCSSL--YLALFKITSPQLLASGNGITSATIAGDVYIHPS 302 (411)
Q Consensus 234 d~l~~l~~~~-~v~~~~------~~~~--~~~I~t~~d~~~a~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 302 (411)
|+++.+++++ ++++|. ..|+ |.+++++++|++++.. ++..... +.. +....+.+++.+|++
T Consensus 200 d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~----~~~----p~~~~~~~~~~ig~~ 271 (456)
T PRK09451 200 DIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVM----LRD----PARFDLRGTLTHGRD 271 (456)
T ss_pred HHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCE----EeC----CCEEEECCcEEECCC
Confidence 9999998775 888885 3565 6779999999988742 2221100 000 011223445666777
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
+.|+++|.|.++++||++|.|+++|.|.+|+|+++|.|+++|.|.+|+|++++.|++++.|..+
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~ 335 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPG 335 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCC
Confidence 7777777777677777777777777777777777777777777777777777777777666654
No 23
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.4e-42 Score=301.50 Aligned_cols=236 Identities=23% Similarity=0.393 Sum_probs=213.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEeccc-chHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY-EEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|+||||||| .||||+|+|...||.|+|+.+||||+|.|+.|..+ ||++|.||+.. +...+++++.++ ++|+++++
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdg-s~~gv~it 76 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDG-SDFGVDIT 76 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCc-cccCcceE
Confidence 789999999 99999999999999999999999999999999998 99999987765 667888888885 67999999
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
|..|.++.|.++|+..+++++. +++|+++.||.++..++.++++.+.+.+.++++++.++ .+|++||++..| ++
T Consensus 77 Y~~Q~~p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d-~~ 150 (286)
T COG1209 77 YAVQPEPDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFD-ED 150 (286)
T ss_pred EEecCCCCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEc-CC
Confidence 9999999999999999999997 69999999999986699999999998899999999999 899999999999 77
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 242 (411)
++++++.|||..+.|+++-+|+|+|++++|+.++...++. .+.+.+ +|+++.++++
T Consensus 151 ~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~-----------------------RGElEI-Td~i~~~i~~ 206 (286)
T COG1209 151 GKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSA-----------------------RGELEI-TDAIDLYIEK 206 (286)
T ss_pred CcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCC-----------------------CCceEe-hHHHHHHHHc
Confidence 8999999999999999999999999999999988754432 245556 9999999988
Q ss_pred C-ceEEEeecceeeecCCccchhhcchHHHhh
Q 015225 243 K-QLYTYETMDFWEQIKTPGMSLKCSSLYLAL 273 (411)
Q Consensus 243 ~-~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~ 273 (411)
| .+......|.|.|.+|++++++|++..+..
T Consensus 207 G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 207 GYLVVAILIRGWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred CcEEEEEEccceEEecCChhhHHHHHHHHHHH
Confidence 7 566667778999999999999999877763
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.4e-41 Score=333.28 Aligned_cols=346 Identities=20% Similarity=0.335 Sum_probs=264.5
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
|+++||||||| .|+||++ .+||+|+|++|+|||+|++++|.++ ++++++++++++.+.+++++.+ .+
T Consensus 1 m~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-------~~ 67 (458)
T PRK14354 1 MNRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-------RS 67 (458)
T ss_pred CCceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-------Cc
Confidence 45899999999 9999985 7999999999999999999999997 8999998888887777777654 13
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
.++.+....|++++++.+++++.. .++++++++||.+ .+.++..+++.|.+.++++++++... +++..|+.+..|
T Consensus 68 ~~~~~~~~~g~~~al~~a~~~l~~-~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d 144 (458)
T PRK14354 68 EFALQEEQLGTGHAVMQAEEFLAD-KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRN 144 (458)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcc-cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEc
Confidence 455566678999999999998852 1367999999985 36678999999987778888877766 566778888887
Q ss_pred CCCCceeEEeccCCC----cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccc
Q 015225 160 PNTKELLHYTEKPET----FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQD 234 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~----~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 234 (411)
++++|..+.|+|.. ....+.++|+|+|+++ +++.+.+..... ..+.+.+ ++
T Consensus 145 -~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d 200 (458)
T PRK14354 145 -ENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDN----------------------AQGEYYL-TD 200 (458)
T ss_pred -CCCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccc----------------------cCCcEeH-HH
Confidence 67899999987632 2246789999999996 556665432110 0122233 67
Q ss_pred hhhcccCCC-ceEEEeeccee--eecCCccchhhcchHHHhhhhhc--Cc--cccccCCCCCCcEEcCCcEECCCCEECC
Q 015225 235 ILSPLAGKK-QLYTYETMDFW--EQIKTPGMSLKCSSLYLALFKIT--SP--QLLASGNGITSATIAGDVYIHPSAKVHP 307 (411)
Q Consensus 235 ~l~~l~~~~-~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~~~--~~--~~~~~~~~~~~~~~~~~~~i~~~~~v~~ 307 (411)
.++.+++.+ ++++|..+++| .++++++|+..++..+.++.... .+ .+.. +..+.+.+++.||+++.|++
T Consensus 201 ~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~----~~~~~i~~~~~ig~~~~i~~ 276 (458)
T PRK14354 201 VIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID----PESTYIDADVEIGSDTVIEP 276 (458)
T ss_pred HHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC----CCeEEECCCcEECCCCEEeC
Confidence 888777654 79999988764 56679999988876554433211 11 1111 22457888889999999999
Q ss_pred CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCC
Q 015225 308 TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDE 387 (411)
Q Consensus 308 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 387 (411)
++.|.+++.||++|.|+++|.|.+|+|+++|+|+ ++.+.+++||++|.||+++.|..+ ++||++++|+.+
T Consensus 277 ~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~ 346 (458)
T PRK14354 277 GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEVKIGNF 346 (458)
T ss_pred CeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCC---------CEEeCCcEECCc
Confidence 9999999999999999999999999999999998 567788999999999998888865 777777777777
Q ss_pred cEEcceEEcCCCEE
Q 015225 388 VVVINSIVLPNKVL 401 (411)
Q Consensus 388 ~~v~~~~i~~~~~v 401 (411)
+.+.+++|++++.+
T Consensus 347 ~~i~~~~i~~~~~i 360 (458)
T PRK14354 347 VEIKKSTIGEGTKV 360 (458)
T ss_pred eEEeeeEECCCCEe
Confidence 66655555554443
No 25
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.7e-40 Score=326.48 Aligned_cols=360 Identities=16% Similarity=0.206 Sum_probs=238.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+++||||||| .|+||++ .+||+|+|++|+|||+|+++.|.++ ++++.|++++..+.+++++.+. + ..+.
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~---~-~~v~ 70 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEY---F-PGVI 70 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhc---C-CceE
Confidence 4899999999 9999997 8999999999999999999999985 6888888888888888888652 1 1355
Q ss_pred EeeCC--CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKED--KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~--~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
++.+. ...|++++++.+.. ..++|++++||.++. ..+.++.+.+.++++++.+.+. +++..|+.+..|
T Consensus 71 ~~~~~~~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~--~~~~~~g~v~~d- 140 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL--ADPKGYGRVVIE- 140 (430)
T ss_pred EEEecCccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc--CCCccCcEEEEc-
Confidence 55443 34689999876321 158899999999642 2345555656667777777776 667778987766
Q ss_pred CCCceeEEeccCCCc----ccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 161 NTKELLHYTEKPETF----VSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
++++..+.|++... ...+.++|+|+|++++|+.+.+...... ....+.+ +|++
T Consensus 141 -~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~---------------------~~~e~~l-~d~i 197 (430)
T PRK14359 141 -NGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQN---------------------AQKEYYL-TDII 197 (430)
T ss_pred -CCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCccc---------------------ccCceeh-hhHH
Confidence 67999999876421 2467899999999999886644321100 0122334 7888
Q ss_pred hcccCC-CceEEEeec-ceeeecCCccchhhcchHHHhhhhhcC--cc--ccccC--CCCCCcEEcCCcEECCCCEECCC
Q 015225 237 SPLAGK-KQLYTYETM-DFWEQIKTPGMSLKCSSLYLALFKITS--PQ--LLASG--NGITSATIAGDVYIHPSAKVHPT 308 (411)
Q Consensus 237 ~~l~~~-~~v~~~~~~-~~~~~I~t~~d~~~a~~~~l~~~~~~~--~~--~~~~~--~~~~~~~~~~~~~i~~~~~v~~~ 308 (411)
+.+++. .++..+..+ ++|.+|++|+||+.++..+..+..... .. ..... ..+.++.+.+++++|+++.|+++
T Consensus 198 ~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~ 277 (430)
T PRK14359 198 ALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGK 277 (430)
T ss_pred HHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCC
Confidence 888766 579998887 589999999999999866554432110 00 00000 01245566666666666666655
Q ss_pred CEECCCcEECCCcEE----------------CCCcEEEeeEECCCC----------EECCCcEEEeeEECCCCEECCCcE
Q 015225 309 AKIGPNVSISANVRV----------------GAGVRLISCIVLDDV----------EIKENAVVLNSIIGWKSSLGRWAR 362 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i----------------~~~~~i~~~~i~~~~----------~i~~~~~i~~s~i~~~~~ig~~~~ 362 (411)
|.|+ +++||++|.| +++|.|.+|+||++| +||+++.|.+|+||++|.||.++.
T Consensus 278 ~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~ 356 (430)
T PRK14359 278 SKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTI 356 (430)
T ss_pred eEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCce
Confidence 5554 4444444444 444444444444444 444444555556666666666655
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+.++.... ...+.||++++||.++.| .+++|++|++|.+++|+..
T Consensus 357 ~~~~~~~~--~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~ 408 (430)
T PRK14359 357 TCNYDGKK--KHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGS 408 (430)
T ss_pred EccccCcc--CcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCc
Confidence 54321100 001566777777766655 5799999999999998754
No 26
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-39 Score=324.49 Aligned_cols=326 Identities=23% Similarity=0.330 Sum_probs=244.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| .|+||++ .+||+|+|++|+|||+|+|++|.+. + ++|+|++++..+.+.+++.. .+.+
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~-~-~~i~vv~~~~~~~i~~~~~~-------~~~~ 66 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKV-A-QKVGVVLGHEAELVKKLLPE-------WVKI 66 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhc-C-CcEEEEeCCCHHHHHHhccc-------ccEE
Confidence 789999999 9999986 7899999999999999999999995 4 88998888777777777653 2455
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. +++|++++||.+ .+.++.++++.|+++++++++++++. +++..||.+..|
T Consensus 67 ~~~~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~v~~d-- 140 (448)
T PRK14357 67 FLQEEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL--EDPTGYGRIIRD-- 140 (448)
T ss_pred EecCCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCcEEEEEc--
Confidence 6667778999999999998842 478999999984 46778999999988889999998887 677889998776
Q ss_pred CCceeEEeccCCCc----ccCcccceEEEeCHHHH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPETF----VSDLINCGVYVFTPDFF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~~~----~~~~~~~Giyi~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
++++ .+.|++..+ ...+.++|+|+|++++| +.+.+..... ..+.+.+ .|++
T Consensus 141 ~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~----------------------~~~~~~~-~d~i 196 (448)
T PRK14357 141 GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNEN----------------------AKGEYYL-TDAV 196 (448)
T ss_pred CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCC----------------------CCCeEEH-HHHH
Confidence 5677 777765322 13578999999999975 4454421100 0122334 5777
Q ss_pred hcccCCCceEEEeecce--eeecCCccchhhcchHHHhhhh----hcCccccccCCCCCCcEEcCCcEECCCCEECCCCE
Q 015225 237 SPLAGKKQLYTYETMDF--WEQIKTPGMSLKCSSLYLALFK----ITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAK 310 (411)
Q Consensus 237 ~~l~~~~~v~~~~~~~~--~~~I~t~~d~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~ 310 (411)
+.+ .++..|...++ |..+++++++..+...+.+... .....+... ..+.+++++.||+++.|++++.
T Consensus 197 ~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~Ig~~~~i~~~~~ 269 (448)
T PRK14357 197 NFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDP----NTTYIHYDVEIGMDTIIYPMTF 269 (448)
T ss_pred Hhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCC----CcEEEccceEECCCcEEcCCcE
Confidence 666 24788888888 5556799888877665543321 111121111 2457788888999999999999
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|++++.||++|+|+++|+|.+|+|+++|+|. .+.+.+|+|++++.||+++++..+ ++||++++|+.++.+
T Consensus 270 I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~---------~~ig~~~~Ig~~~~i 339 (448)
T PRK14357 270 IEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREG---------TVLKKSVKIGNFVEI 339 (448)
T ss_pred EEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCc---------ccccCCcEecCceee
Confidence 9888999999999999999999999999885 467778888888888888877665 566666655555444
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-38 Score=316.50 Aligned_cols=344 Identities=19% Similarity=0.337 Sum_probs=259.8
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.+|||||| .|+||++ .+||+|+|++|+|||+|+|++|.++ ++++++|++.+..+.+.+++.+. + .+.+
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~----~-~i~~ 70 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHL----P-GLEF 70 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhccc----C-CeEE
Confidence 789999999 9999986 7899999999999999999999997 89999988887777777777542 1 4566
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc--cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC--CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+.+....|++++++.+++++.. .++++++++||.+ .+.++..+++.|++.+++++++..+. .++..||.+..| +
T Consensus 71 v~~~~~~G~~~sv~~~~~~l~~-~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~ 146 (450)
T PRK14360 71 VEQQPQLGTGHAVQQLLPVLKG-FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCD-G 146 (450)
T ss_pred EEeCCcCCcHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEEC-C
Confidence 6666678999999999998852 2367999999995 46679999999988888877777665 677779998888 6
Q ss_pred CCceeEEeccCC----CcccCcccceEEEeCHHHHHHhh-hhhhcccccccccccchhhhhhhcccCCCCceeeeccchh
Q 015225 162 TKELLHYTEKPE----TFVSDLINCGVYVFTPDFFTAIQ-GVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDIL 236 (411)
Q Consensus 162 ~~~v~~~~e~~~----~~~~~~~~~Giyi~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 236 (411)
+++|.++.|+|. ...+.+.++|+|+|+++.|..+. +..+.. ....+.+ +|.+
T Consensus 147 ~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~~-td~i 203 (450)
T PRK14360 147 NNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNN----------------------DQKEYYL-TDTV 203 (450)
T ss_pred CCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccc----------------------cCCceeH-HHHH
Confidence 889999999874 23467899999999997765443 321110 0012223 6666
Q ss_pred hcccCCCceEEEeeccee--eecCCccchhhcchHHHhhhh----hcCccccccCCCCCCcEEcCCcEECCCCEECCCCE
Q 015225 237 SPLAGKKQLYTYETMDFW--EQIKTPGMSLKCSSLYLALFK----ITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAK 310 (411)
Q Consensus 237 ~~l~~~~~v~~~~~~~~~--~~I~t~~d~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~ 310 (411)
+.+. .+..+...++| ..+++++++..+...+..... .....++.. ....+.+++++++++.|++++.
T Consensus 204 ~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~----~~~~i~~~~~ig~~~~i~~~~~ 276 (450)
T PRK14360 204 SLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDP----ASCTISETVELGPDVIIEPQTH 276 (450)
T ss_pred HHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecC----CeEEEeCCEEECCCCEECCCCE
Confidence 6663 24555556554 458999999888766543322 111121211 1245778889999999999999
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.++++||++|.|++++.|.+|+|+++|+|+ ++.+.+|+|++++.|+.++.|.++ ++||++++|+.++.+
T Consensus 277 i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~---------~~Ig~~~~Ig~~~~i 346 (450)
T PRK14360 277 LRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPE---------AQIGSNCRIGNFVEI 346 (450)
T ss_pred EeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCC---------CEEeCceEECCCEEE
Confidence 9999999999999999999999999999995 567788888888888888888766 777777777777766
Q ss_pred cceEEcCCCEEc
Q 015225 391 INSIVLPNKVLN 402 (411)
Q Consensus 391 ~~~~i~~~~~v~ 402 (411)
.+++++.++.+.
T Consensus 347 ~~~~i~~~~~i~ 358 (450)
T PRK14360 347 KKSQLGEGSKVN 358 (450)
T ss_pred eccccCCCcEec
Confidence 555555555443
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=1e-38 Score=297.09 Aligned_cols=239 Identities=17% Similarity=0.270 Sum_probs=199.0
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc-----
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN----- 75 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~----- 75 (411)
|.+|+||||||| .||||+|+|..+||+|+||+|+|+|+|+++++..+ |+++|+|++++..+.+.+|+...+.
T Consensus 1 ~~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~ 77 (297)
T TIGR01105 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHH
Confidence 889999999999 99999999999999999999999999999999997 9999999999998899999865211
Q ss_pred ----------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--------CChHHHHHHH
Q 015225 76 ----------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--------FPLPDLLEAH 131 (411)
Q Consensus 76 ----------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~ 131 (411)
+++.++.++.|+++.||+++++.+++++. +++|+++.||.+++ .++..++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~---~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~ 154 (297)
T TIGR01105 78 EQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG---DNPFVVVLPDIIIDDATADPLRYNLAAMIARF 154 (297)
T ss_pred HHhcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC---CCCEEEEECCeeccccccccchhHHHHHHHHH
Confidence 24567889999999999999999999995 47899999999875 4889999999
Q ss_pred HhcCCeeEEEEEecCcccccceeEEEEcC---CCCc---eeEEeccCCCc---ccCcccceEEEeCHHHHHHhhhhhhcc
Q 015225 132 KRYGGMGTMLVIKVSAESAHQFGELIADP---NTKE---LLHYTEKPETF---VSDLINCGVYVFTPDFFTAIQGVLTHR 202 (411)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~v~~d~---~~~~---v~~~~e~~~~~---~~~~~~~Giyi~~~~~~~~l~~~~~~~ 202 (411)
.++++.++++. ..+ ++++.||++..|. ++++ |.++.|||..+ .++++++|+|+|++++|+.+.+....
T Consensus 155 ~~~~~~~~~~~-~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~- 231 (297)
T TIGR01105 155 NETGRSQVLAK-RMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPG- 231 (297)
T ss_pred HHhCCcEEEEE-EcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCC-
Confidence 87776654443 332 4688999998841 3454 58888998644 47899999999999999988653211
Q ss_pred cccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHH
Q 015225 203 EDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
..+.+.+ +|+++.++++++++++..+|+|.|+|+|++|++++..+.
T Consensus 232 ----------------------~~ge~~l-td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 232 ----------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred ----------------------CCCeeeH-HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1133445 799999999899999999999999999999999987763
No 29
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=3.1e-37 Score=284.39 Aligned_cols=256 Identities=53% Similarity=0.998 Sum_probs=206.7
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
|||||||..+|+||+|+|..+||+|+|++|+|||+|+|++|..+.|+++|+|++++..+.+.+|+++..+.++..+.++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 68999981129999999999999999999999999999999982299999999998888999999875445667777777
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++++.+..+++|+|++||++++.+++.++++|+++++++|+++.+.+.+++..||++..|.++++|
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g~v 160 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEV 160 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCCeE
Confidence 77788999999999999854335789999999999999999999999999999988887644567889998887346899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCce
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 245 (411)
..+.|||....+.++++|+|+|++++|+.+.+....... ++.+ .....++-..+.+++..|+++.+++++++
T Consensus 161 ~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~-----e~~~---~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 232 (257)
T cd06428 161 LHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQ-----EAQL---GDDNNREGRAEVIRLEQDVLTPLAGSGKL 232 (257)
T ss_pred EEEEeCCCCcccceEEEEEEEECHHHHHHHhhhcccccc-----cccc---ccccccccccceeeehhhhhhHHhccCCE
Confidence 999999987778899999999999999888754322110 0000 00000000124455668999999988999
Q ss_pred EEEeecceeeecCCccchhhcchH
Q 015225 246 YTYETMDFWEQIKTPGMSLKCSSL 269 (411)
Q Consensus 246 ~~~~~~~~~~~I~t~~d~~~a~~~ 269 (411)
++|..+|||.||+++++|+++++.
T Consensus 233 ~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 233 YVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred EEecCCCeeecCCCHHHHHhHhhc
Confidence 999999999999999999999874
No 30
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2.9e-37 Score=280.61 Aligned_cols=233 Identities=36% Similarity=0.684 Sum_probs=201.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|++|||||| .|+||+|+|...||+|+|++|+|||+|+++++..+ ++++|+|++++..+.+++++.+..+..+..+.+
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~ 77 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITF 77 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEe
Confidence 689999999 99999999999999999999999999999999997 999999999988888899988643345666666
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
..+....|++++++.+++++... +++|++++||++++.++..+++.|+++++++++++.+. .++..||++..|.+++
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~~~~ 154 (233)
T cd06425 78 SIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKV--EDPSKYGVVVHDENTG 154 (233)
T ss_pred ccCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEc--CCccccCeEEEcCCCC
Confidence 65667789999999999998521 36799999999999999999999999999999998887 5667899999883278
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 243 (411)
+|..+.|||..+.++++++|+|+|++++|+.+.+. ..++..++++.+++++
T Consensus 155 ~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~~~~~~~~l~~~~ 205 (233)
T cd06425 155 RIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLR-----------------------------PTSIEKEIFPKMASEG 205 (233)
T ss_pred EEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccC-----------------------------cccchhhhHHHHHhcC
Confidence 99999999877668899999999999999877542 1123367889898889
Q ss_pred ceEEEeecceeeecCCccchhhcchHHH
Q 015225 244 QLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 244 ~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
++.+|..+++|.||++|++|++|++.+|
T Consensus 206 ~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 206 QLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred CEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 9999999999999999999999987664
No 31
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=4e-37 Score=285.73 Aligned_cols=238 Identities=20% Similarity=0.309 Sum_probs=204.6
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~ 79 (411)
|+.|+||||||| .|+||+|+|..+||+|+||+|+|||+|+|++|..+ |+++|+|++ ++..+.++++++++ +.|+.
T Consensus 1 m~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g-~~~g~ 76 (292)
T PRK15480 1 MKTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDG-SQWGL 76 (292)
T ss_pred CCceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCc-cccCc
Confidence 899999999999 99999999999999999999999999999999997 999998765 45567788998874 46888
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
++.++.++...|+++++..+.+++. +++++++.||.++ +.++..+++.|.+.+.++++++.++ .+++.||++..
T Consensus 77 ~i~y~~q~~~~Gta~Al~~a~~~i~---~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~ 151 (292)
T PRK15480 77 NLQYKVQPSPDGLAQAFIIGEEFIG---GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEF 151 (292)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhC---CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEE
Confidence 9999999888999999999999985 3568888999774 8899999999988888889888887 78889999999
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
| ++++|+++.|||..+.++++++|+|+|++++++.+++..+. ..+.+.+ +|+++.
T Consensus 152 d-~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~-----------------------~~ge~~i-td~~~~ 206 (292)
T PRK15480 152 D-QNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPS-----------------------ARGELEI-TDINRI 206 (292)
T ss_pred C-CCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCC-----------------------CCCeeEh-HHHHHH
Confidence 9 78899999999988889999999999999999988654221 1234556 799998
Q ss_pred ccCCCceEE-Eeecc-eeeecCCccchhhcchHHHh
Q 015225 239 LAGKKQLYT-YETMD-FWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 239 l~~~~~v~~-~~~~~-~~~~I~t~~d~~~a~~~~l~ 272 (411)
+++++++.. +...+ .|.|++|+++|.+|++.+..
T Consensus 207 ~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~~ 242 (292)
T PRK15480 207 YMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIAT 242 (292)
T ss_pred HHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHHH
Confidence 888887643 45567 59999999999999987753
No 32
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=7.6e-37 Score=285.34 Aligned_cols=238 Identities=18% Similarity=0.262 Sum_probs=199.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc-----
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN----- 75 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~----- 75 (411)
|.+|+||||||| +|+||+|+|..+||+|+||+|+|+|+|+++++..+ |+++|+|++++..+.+.+|+...+.
T Consensus 1 ~~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~ 77 (297)
T PRK10122 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLL 77 (297)
T ss_pred CCceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHH
Confidence 899999999999 99999999999999999999999999999999997 9999999999988899999864210
Q ss_pred ----------------cCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--------CChHHHHHHH
Q 015225 76 ----------------ELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--------FPLPDLLEAH 131 (411)
Q Consensus 76 ----------------~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~ 131 (411)
.++.++.++.|.+..|++++++.+++++. +++|+++.||.+++ .++..+++.|
T Consensus 78 ~~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h 154 (297)
T PRK10122 78 EQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAMIARF 154 (297)
T ss_pred hhcchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHHHHHH
Confidence 13457788888889999999999999985 47899999999875 4799999999
Q ss_pred HhcCCeeEEEEEecCcccccceeEEEEcC---CCC---ceeEEeccCCCc---ccCcccceEEEeCHHHHHHhhhhhhcc
Q 015225 132 KRYGGMGTMLVIKVSAESAHQFGELIADP---NTK---ELLHYTEKPETF---VSDLINCGVYVFTPDFFTAIQGVLTHR 202 (411)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~v~~d~---~~~---~v~~~~e~~~~~---~~~~~~~Giyi~~~~~~~~l~~~~~~~ 202 (411)
.+.+++++++.... +++..||++..|. +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+..+.
T Consensus 155 ~~~~~~~~~~~~~~--~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~- 231 (297)
T PRK10122 155 NETGRSQVLAKRMP--GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPG- 231 (297)
T ss_pred HHhCCcEEEEEECC--CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCC-
Confidence 88877654444333 4778999998851 244 688999998644 37899999999999999988652210
Q ss_pred cccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHH
Q 015225 203 EDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
..+.+.+ +|+++.+++++++.+|..+|+|.|+++|++|++++..+
T Consensus 232 ----------------------~~~e~~l-td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 232 ----------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred ----------------------CCCeeeH-HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 1133445 79999999989999999999999999999999999887
No 33
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.2e-36 Score=277.58 Aligned_cols=238 Identities=30% Similarity=0.531 Sum_probs=198.9
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEE-EEecccchHHHHHHHhhhcccCCcceE
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQI-FLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I-~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
+||||||| +|+||+|+|..+||+|+|++|+ |||+|+|++|..+ |++++ +|+++++.+.+.+++++. ..++.++.
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIE 76 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeeccccccccccccc-ccccccce
Confidence 69999999 9999999999999999999999 9999999999997 99995 555557788899999985 44677889
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccC-CCeEEEEcCCcccCCChHHHHHHHHhcCCe--eEEEEEecCcccccceeEEEEc
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEEN-PSHIILLNCDVCCSFPLPDLLEAHKRYGGM--GTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~g~v~~d 159 (411)
++.+....|++++++.+++++.... +++|++++||++++.++.++++.|.+++++ +++...+. ++++.||++..|
T Consensus 77 ~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d 154 (248)
T PF00483_consen 77 YIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV--EDPSRYGVVEVD 154 (248)
T ss_dssp EEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES--SGGGGSEEEEEE
T ss_pred eeecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccc--cccccceeeeec
Confidence 9988888999999999999997322 245999999999999999999999998884 45555555 788999999999
Q ss_pred CCCCceeEEeccCCCcc-cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 160 PNTKELLHYTEKPETFV-SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~-~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
++++|..+.|||.... +.++++|+|+|++++|+.+.+..... +.+...+ .|+++.
T Consensus 155 -~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~----------------------~~~~~~l-~d~i~~ 210 (248)
T PF00483_consen 155 -EDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKEN----------------------ARGEDFL-TDAIPK 210 (248)
T ss_dssp -TTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTC----------------------TTSSHHH-HHHHHH
T ss_pred -cceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhcc----------------------chhhhHH-HHHHHH
Confidence 7899999999998776 88999999999999999885422111 1112223 788999
Q ss_pred ccCCC-ceEEEeecc--eeeecCCccchhhcchHHHh
Q 015225 239 LAGKK-QLYTYETMD--FWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 239 l~~~~-~v~~~~~~~--~~~~I~t~~d~~~a~~~~l~ 272 (411)
+++++ .+.++..++ +|.||++|++|++|++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 211 LLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 88776 566888888 79999999999999998864
No 34
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=1.3e-35 Score=275.36 Aligned_cols=234 Identities=20% Similarity=0.297 Sum_probs=199.4
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCcceEE
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+||||||| .|+||+|+|..+||+|+||+|+|||+|+|+.|..+ |+++|+|++ ++..+.+++++.++ +.|++++.+
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g-~~~g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDG-SQWGVNLSY 76 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccc-cccCceEEE
Confidence 58999999 99999999999999999999999999999999997 999998766 46667788888774 468889999
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcc-cCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVC-CSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
+.+....|++++++.+++++. +++++++.||.+ ++.++..+++.|.+.++++++++.++ .++..||++..| ++
T Consensus 77 ~~q~~~~Gta~al~~a~~~l~---~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v--~~p~~yGvv~~d-~~ 150 (286)
T TIGR01207 77 AVQPSPDGLAQAFIIGEDFIG---GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQV--SDPERYGVVEFD-SN 150 (286)
T ss_pred EEccCCCCHHHHHHHHHHHhC---CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEc--cCHHHCceEEEC-CC
Confidence 998888999999999999996 467888899976 58899999999988888889998888 788899999999 78
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 242 (411)
++|+++.|||..+.++++++|+|+|++++++.+.+..+. ..+.+.+ +|+++.++++
T Consensus 151 g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-----------------------~~ge~ei-tdv~~~~l~~ 206 (286)
T TIGR01207 151 GRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPS-----------------------ARGELEI-TDLNRVYLEE 206 (286)
T ss_pred CeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCC-----------------------CCCcEeH-HHHHHHHHHc
Confidence 899999999988888999999999999999888654321 0122344 7999998888
Q ss_pred CceEEEee-cce-eeecCCccchhhcchHHHh
Q 015225 243 KQLYTYET-MDF-WEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 243 ~~v~~~~~-~~~-~~~I~t~~d~~~a~~~~l~ 272 (411)
+++.++.. .++ |.|++||++|++|+..+..
T Consensus 207 g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~ 238 (286)
T TIGR01207 207 GRLSVELLGRGYAWLDTGTHDSLLEASNFIQT 238 (286)
T ss_pred CCcEEEEecCCCEEEeCCCHHHHHHHHHHHHH
Confidence 77665554 575 9999999999999876643
No 35
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.6e-35 Score=270.27 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=196.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEeccc-chHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFY-EEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~-~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|+||||||| +|+||+|+|..+||+|+|++|+|||+|+|+++..+ |+++|++++++ ..+.+.+++.+. +.|+..+.
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~ 76 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDG-SDLGIRIT 76 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcc-cccCceEE
Confidence 689999999 99999999999999999999999999999999997 99999987754 457788888764 45777787
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
+..+....|++++++.++++++ .+++++++||.++ +.++.++++.|.+.++++++++.+. .++..||.+..| +
T Consensus 77 ~~~~~~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~ 150 (240)
T cd02538 77 YAVQPKPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV--NDPERYGVVEFD-E 150 (240)
T ss_pred EeeCCCCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC--CchhcCceEEec-C
Confidence 7777677899999999999885 4789999999875 6679999999988888888888877 567789999998 7
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|+.+.|||..+.+.+.++|+|+|++++|+.+.+.... ....+.+ .++++.+++
T Consensus 151 ~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~-----------------------~~~~~~l-~d~~~~l~~ 206 (240)
T cd02538 151 NGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPS-----------------------ARGELEI-TDVNNEYLE 206 (240)
T ss_pred CCcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCC-----------------------CCCeEEh-HHHHHHHHH
Confidence 7899999999887777899999999999999887643211 0122334 689999988
Q ss_pred CCceEEEeec--ceeeecCCccchhhcchHH
Q 015225 242 KKQLYTYETM--DFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 242 ~~~v~~~~~~--~~~~~I~t~~d~~~a~~~~ 270 (411)
++++.++..+ ++|.||+||++|+++++.+
T Consensus 207 ~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 207 KGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred hCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 8887777766 9999999999999998754
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=4.9e-34 Score=261.98 Aligned_cols=226 Identities=22% Similarity=0.376 Sum_probs=189.0
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCCc--
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELKV-- 79 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~~-- 79 (411)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++..+ |+++|+|++++..+.+.+++.+... .+..
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 77 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEe
Confidence 58999999 99999999999999999999999999999999997 9999999999888889999875311 1111
Q ss_pred ---------------ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEe
Q 015225 80 ---------------PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 80 ---------------~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
.+++..+.+..||+++++.+++++. +++|++++||.+++.++.++++.|.+.+++++++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~- 153 (254)
T TIGR02623 78 ADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV- 153 (254)
T ss_pred cccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe-
Confidence 2233444566899999999999985 578999999999999999999999998888887654
Q ss_pred cCcccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCC
Q 015225 145 VSAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTL 224 (411)
Q Consensus 145 ~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (411)
.++..||.+..| + ++|..+.|||... +.+.++|+|+|++++|+.+.+.
T Consensus 154 ---~~~~~yG~v~~d-~-~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~-------------------------- 201 (254)
T TIGR02623 154 ---QPPGRFGALDLE-G-EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD-------------------------- 201 (254)
T ss_pred ---cCCCcccEEEEC-C-CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc--------------------------
Confidence 345779999888 4 5999999998543 6789999999999998877531
Q ss_pred CCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHh
Q 015225 225 PVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 225 ~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
..++..|+++.+++++++++|..+|+|.+|+||++|.+++..+.+
T Consensus 202 ---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 202 ---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred ---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHc
Confidence 112337899999988999999999999999999999888876654
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=9.7e-34 Score=258.06 Aligned_cols=234 Identities=25% Similarity=0.408 Sum_probs=199.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|+||||||| .|+||+|+|...||+|+|++|+|||+|++++|..+ ++++|+|++++..+.+.+++++. ..|+.++.+
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~ 76 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDG-SRFGVRITY 76 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEE
Confidence 789999999 99999999999999999999999999999999997 99999999988888889998764 346777888
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
+.+....|++++++.+++++. .+++++++||++++.++.++++.|.+.++++++++.+. .++..||.+..| ++
T Consensus 77 ~~~~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d--~~ 149 (236)
T cd04189 77 ILQEEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEV--EDPRRFGVAVVD--DG 149 (236)
T ss_pred EECCCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEEC--CCcccceEEEEc--CC
Confidence 877777899999999999885 47899999999999999999999988888888888876 566778988887 45
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK 243 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 243 (411)
+|..+.|||..+.+.+.++|+|+|++++++.+.+.... ..+.+.+ .++++.+++++
T Consensus 150 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~-----------------------~~~~~~~-~d~~~~~i~~g 205 (236)
T cd04189 150 RIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPS-----------------------WRGELEI-TDAIQWLIDRG 205 (236)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCC-----------------------CCCeEEH-HHHHHHHHHcC
Confidence 99999999876667889999999999999877542110 0122334 68888888665
Q ss_pred -ceEEEeecceeeecCCccchhhcchHHHh
Q 015225 244 -QLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 244 -~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
++.++..+++|.+|+||++|.++++.+++
T Consensus 206 ~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 206 RRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred CcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 79999999999999999999999988775
No 38
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1e-33 Score=264.71 Aligned_cols=234 Identities=20% Similarity=0.284 Sum_probs=195.6
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccC-----
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNEL----- 77 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~----- 77 (411)
-|+||||||| .|+||+|+|..+||+|+|++|+|+|+|+|+++..+ ++++|+|++++..+.+.+|+.+.. .|
T Consensus 8 ~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~l~ 83 (302)
T PRK13389 8 VKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSF-ELEAMLE 83 (302)
T ss_pred ceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccch-hhhhhhh
Confidence 4889999999 99999999999999999999999999999999997 999999999998888999997531 12
Q ss_pred -----------------CcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC--------CChHHHHHHHH
Q 015225 78 -----------------KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS--------FPLPDLLEAHK 132 (411)
Q Consensus 78 -----------------~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~--------~~l~~~l~~~~ 132 (411)
+..+.++.|....|++++++.+++++. +++|+|++||.+++ .++.+++++|.
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~ 160 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHHHHH
Confidence 234566677778899999999999875 47899999999874 68999999998
Q ss_pred hcCCeeEEEEEecCcccccceeEEEEcC------CCCceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccc
Q 015225 133 RYGGMGTMLVIKVSAESAHQFGELIADP------NTKELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHRED 204 (411)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~v~~d~------~~~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~ 204 (411)
+.+++ ++++.+. +++..||++..|. ++++|..+.|||. ...++++++|+|+|++++|+.+.+....
T Consensus 161 ~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~--- 234 (302)
T PRK13389 161 ETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPG--- 234 (302)
T ss_pred hcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCC---
Confidence 87765 6777776 7788999998761 1347999999986 3457899999999999999888653211
Q ss_pred cccccccchhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHH
Q 015225 205 RANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
..+.+.+ +|+++.+++++++++|..+|+|.||++|++|++++..+
T Consensus 235 --------------------~~~e~~l-~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 235 --------------------AGDEIQL-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred --------------------CCCeeeH-HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHH
Confidence 1123335 79999999888999999999999999999999998876
No 39
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.7e-33 Score=253.76 Aligned_cols=218 Identities=19% Similarity=0.311 Sum_probs=186.9
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
+||||||| .|+||+|+|..+||+|+|++|+|||+|++++|.++ |+++|+|++++..+.+.+++.+ +.|+..+.+.
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~ 75 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGD--SRFGLRITIS 75 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhc--ccCCceEEEe
Confidence 58999999 99999999999999999999999999999999997 9999999999888889999886 4577778777
Q ss_pred eCC-CCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHH--hcCCeeEEEEEecCcccccceeEEEEcCC
Q 015225 85 KED-KPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHK--RYGGMGTMLVIKVSAESAHQFGELIADPN 161 (411)
Q Consensus 85 ~~~-~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~g~v~~d~~ 161 (411)
.+. +..|++++++.+++++. .++|++++||++++.++..+++.|. +.+..+++...+. ++...+|.+..| +
T Consensus 76 ~~~~~~~g~~~~l~~~~~~~~---~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~ 149 (221)
T cd06422 76 DEPDELLETGGGIKKALPLLG---DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLD-A 149 (221)
T ss_pred cCCCcccccHHHHHHHHHhcC---CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEEC-C
Confidence 765 67799999999999985 4789999999999999999999997 4556666666665 566788988888 6
Q ss_pred CCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC
Q 015225 162 TKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG 241 (411)
Q Consensus 162 ~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 241 (411)
+++|..+.++|. ..+.++|+|+|++++++.+.+. .+.+ +++++.+++
T Consensus 150 ~~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~-~d~~~~l~~ 196 (221)
T cd06422 150 DGRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-----------------------------KFSL-NPLWDRAIA 196 (221)
T ss_pred CCcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-----------------------------cccH-HHHHHHHHH
Confidence 789999988874 3788999999999998876431 1123 688888888
Q ss_pred CCceEEEeecceeeecCCccchhhc
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
++++.+|...++|.+|+++++|.+|
T Consensus 197 ~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 197 AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 8899999999999999999999865
No 40
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=2.4e-33 Score=260.12 Aligned_cols=237 Identities=22% Similarity=0.292 Sum_probs=192.6
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc------c-
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN------E- 76 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~------~- 76 (411)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+.+|+...+. .
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKK 77 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhc
Confidence 689999999 99999999999999999999999999999999997 9999999999988889998865211 0
Q ss_pred -------------CCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC---ChHHHHHHHHhcCCeeEE
Q 015225 77 -------------LKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF---PLPDLLEAHKRYGGMGTM 140 (411)
Q Consensus 77 -------------~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~~ 140 (411)
.+..+.++.+....|++++++.+++++. .++|++++||.++.. ++..+++.|.+.+++ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~ 153 (267)
T cd02541 78 GKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG---DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VI 153 (267)
T ss_pred ccHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC---CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EE
Confidence 1345667777778899999999999985 378999999998743 499999999876665 45
Q ss_pred EEEecCcccccceeEEEEcCC---CCceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhh
Q 015225 141 LVIKVSAESAHQFGELIADPN---TKELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFE 215 (411)
Q Consensus 141 ~~~~~~~~~~~~~g~v~~d~~---~~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (411)
++.+.+.++...||++..|.. +++|..+.|||. ...+.+.++|+|+|++++|+.+.+....
T Consensus 154 ~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~-------------- 219 (267)
T cd02541 154 AVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPG-------------- 219 (267)
T ss_pred EEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCC--------------
Confidence 555554356788999988831 248999999985 3456788999999999999887542110
Q ss_pred hhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHH
Q 015225 216 ALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l 271 (411)
..+.+.+ .++++.+++++++++|..+++|.||+||++|+++++.+.
T Consensus 220 ---------~~~e~~~-~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 220 ---------KGGEIQL-TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred ---------CCCcEEH-HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 0122334 688999988889999999999999999999999998763
No 41
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=3.1e-33 Score=258.45 Aligned_cols=232 Identities=21% Similarity=0.306 Sum_probs=188.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc--------
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN-------- 75 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~-------- 75 (411)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.++ |+++|+|++++..+.+.+|+++.+.
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 77 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKR 77 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhh
Confidence 689999999 99999999999999999999999999999999996 9999999999988889999874210
Q ss_pred ----------c-C-CcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC---ChHHHHHHHHhcCCeeEE
Q 015225 76 ----------E-L-KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF---PLPDLLEAHKRYGGMGTM 140 (411)
Q Consensus 76 ----------~-~-~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~---~l~~~l~~~~~~~~~~~~ 140 (411)
. . +..+.+..+....|++++++.+++++. +++|++++||.++.. ++..+++.|.+.++++ +
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i 153 (260)
T TIGR01099 78 GKEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-I 153 (260)
T ss_pred hhHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-E
Confidence 0 0 124556667778899999999999884 578999999999743 6999999998888775 5
Q ss_pred EEEecCcccccceeEEEEcC---CCCceeEEeccCC--CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhh
Q 015225 141 LVIKVSAESAHQFGELIADP---NTKELLHYTEKPE--TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFE 215 (411)
Q Consensus 141 ~~~~~~~~~~~~~g~v~~d~---~~~~v~~~~e~~~--~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 215 (411)
++...+.+++..||++..|. ++++|+.+.|||. ...+.++++|+|+|++++|+.+.+....
T Consensus 154 ~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~-------------- 219 (260)
T TIGR01099 154 AVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPG-------------- 219 (260)
T ss_pred EEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCC--------------
Confidence 55555435678899988861 2368999999984 3456789999999999999888643211
Q ss_pred hhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhc
Q 015225 216 ALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
..+.+.+ .++++.+++++++++|..+|+|.||+++++|+++
T Consensus 220 ---------~~~~~~l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 220 ---------AGGEIQL-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred ---------CCCceeH-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 0123344 6889999888899999999999999999999875
No 42
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=2.3e-32 Score=246.76 Aligned_cols=222 Identities=27% Similarity=0.445 Sum_probs=189.2
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+|+|...||+|+|++|+|||+|+++++.++ ++++|+|+++++.+.+.+++... ..++..+.+..
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 76 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVI 76 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEE
Confidence 6999999 99999999999999999999999999999999997 89999999988777888888753 22455666666
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++.+. +++|++++||++++.++..+++.|++.+.++++++.+. ++...|+.+..| ++++|
T Consensus 77 ~~~~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v 150 (223)
T cd06915 77 EPEPLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRV--PDASRYGNVTVD-GDGRV 150 (223)
T ss_pred CCCCCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEEC--CCCCcceeEEEC-CCCeE
Confidence 6677899999999999884 58899999999998899999999988888888888876 556788988888 67899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCce
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 245 (411)
..+.++|....+.+.++|+|+|++++|+.+.+. .+++.+++++.+++++++
T Consensus 151 ~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~-----------------------------~~~~~~~~~~~l~~~~~v 201 (223)
T cd06915 151 IAFVEKGPGAAPGLINGGVYLLRKEILAEIPAD-----------------------------AFSLEADVLPALVKRGRL 201 (223)
T ss_pred EEEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc-----------------------------CCChHHHHHHHHHhcCcE
Confidence 999998766567789999999999998876432 011226788888877899
Q ss_pred EEEeecceeeecCCccchhhc
Q 015225 246 YTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 246 ~~~~~~~~~~~I~t~~d~~~a 266 (411)
.+|+..++|.+|++++||..|
T Consensus 202 ~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 202 YGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred EEEecCCeEEecCCHHHHHhh
Confidence 999999999999999999887
No 43
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=6e-32 Score=243.61 Aligned_cols=219 Identities=27% Similarity=0.506 Sum_probs=185.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| +|+||+|+|..+||+|+|++|+|||+|++++|.++ ++++|+|++++..+.+++++.+. ..|+.++.++.
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVR 76 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCc-cccCccEEEEE
Confidence 6999999 99999999999999999999999999999999997 99999999998888888888764 34677777777
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|+++++..+.+.. .++|++++||.+.+.++..+++.|++.++++++++.+. .....||.+..| + ++|
T Consensus 77 ~~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~-~~v 148 (220)
T cd06426 77 EDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREY--EVQVPYGVVETE-G-GRI 148 (220)
T ss_pred CCCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEC-C-CEE
Confidence 667789999998776654 48899999999988999999999988888888888775 455678988888 4 899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC-c
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK-Q 244 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-~ 244 (411)
..+.|+|.. +.+.++|+|+|++++++.+.+. .++.+ +++++.+++.+ +
T Consensus 149 ~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~----------------------------~~~~l-~~~~~~~i~~~~~ 197 (220)
T cd06426 149 TSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKN----------------------------EFFDM-PDLIEKLIKEGKK 197 (220)
T ss_pred EEEEECCCC--CCeEEEEEEEEcHHHHhhcCCC----------------------------CCcCH-HHHHHHHHHCCCc
Confidence 999998754 5678999999999998876431 22234 67888887664 7
Q ss_pred eEEEeecceeeecCCccchhhcc
Q 015225 245 LYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 245 v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
+.+|..+++|.+++|+++|.+|+
T Consensus 198 i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 198 VGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEEeCCeEEeCCCHHHHHhhC
Confidence 99999999999999999999875
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=6.5e-32 Score=248.29 Aligned_cols=225 Identities=23% Similarity=0.390 Sum_probs=185.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCCc---
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELKV--- 79 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~~--- 79 (411)
||||||| +|+||+|+|..+||+|+|++|+|||+|+++.+..+ |+++|+|++++..+.+.+++++..+ .+..
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 77 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLG 77 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeec
Confidence 6999999 99999999999999999999999999999999997 9999999999988899999976421 1111
Q ss_pred --ceEEee------------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEec
Q 015225 80 --PVRYLK------------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 80 --~i~~v~------------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
++.+.. +....|++++++.+++++.. +++|++++||.+++.++..+++.|.+.+++++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~- 154 (253)
T cd02524 78 TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH- 154 (253)
T ss_pred ccceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec-
Confidence 111122 22246789999999998851 2789999999999999999999999888888877653
Q ss_pred CcccccceeEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCC
Q 015225 146 SAESAHQFGELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP 225 (411)
Q Consensus 146 ~~~~~~~~g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (411)
+...||.+..| ++++|..+.|||... +.+.++|+|+|++++++.+.+.
T Consensus 155 ---~~~~~g~v~~d-~~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~--------------------------- 202 (253)
T cd02524 155 ---PPGRFGELDLD-DDGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD--------------------------- 202 (253)
T ss_pred ---CCCcccEEEEC-CCCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc---------------------------
Confidence 35678989988 678999999998654 5688999999999998877542
Q ss_pred CceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHH
Q 015225 226 VDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 226 ~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
...+..++++.+++++++++|...|+|.+|+|+++|.+++..+
T Consensus 203 --~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 203 --DTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred --cchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHH
Confidence 0112268899999889999999999999999999999998655
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=1.3e-31 Score=240.86 Aligned_cols=217 Identities=29% Similarity=0.540 Sum_probs=187.4
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++++..+ ++++|+|++++..+.+++++.+. ..++..+.++.
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~ 76 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVV 76 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEe
Confidence 6999999 99999999999999999999999999999999997 89999999998878888888764 23567788887
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++++. +++|++++||++++.++.++++.|.++++++++++.+. +++..|+.+..| ++++|
T Consensus 77 ~~~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v 150 (217)
T cd04181 77 QEEPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELD-DDGRV 150 (217)
T ss_pred CCCCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEc-CCCcE
Confidence 7777899999999999883 58999999999999999999999998899999998887 577789999998 67899
Q ss_pred eEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCCce
Q 015225 166 LHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKKQL 245 (411)
Q Consensus 166 ~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v 245 (411)
..+.|+|......+.++|+|+|++++++.+.+... ..+.+..++++.+++++++
T Consensus 151 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~~~l~~~~~v 204 (217)
T cd04181 151 TRFVEKPTLPESNLANAGIYIFEPEILDYIPEILP--------------------------RGEDELTDAIPLLIEEGKV 204 (217)
T ss_pred EEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC--------------------------cccccHHHHHHHHHhcCCE
Confidence 99999987665688999999999999887765321 0112227899999888999
Q ss_pred EEEeecceeeecC
Q 015225 246 YTYETMDFWEQIK 258 (411)
Q Consensus 246 ~~~~~~~~~~~I~ 258 (411)
++|..+|+|.||+
T Consensus 205 ~~~~~~g~w~dig 217 (217)
T cd04181 205 YGYPVDGYWLDIG 217 (217)
T ss_pred EEEEcCCEEecCC
Confidence 9999999999985
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-31 Score=235.68 Aligned_cols=243 Identities=20% Similarity=0.278 Sum_probs=207.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhc------
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSIS------ 74 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~------ 74 (411)
|+..+|||+||| .||||.|.|...||-||||.+||+|+|+++.+..+ |+++|++|++.....+.+|++...
T Consensus 2 ~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 2 MKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 466889999999 99999999999999999999999999999999997 999999999988888999987642
Q ss_pred ------------ccC--CcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC---CChHHHHHHHHhcCCe
Q 015225 75 ------------NEL--KVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS---FPLPDLLEAHKRYGGM 137 (411)
Q Consensus 75 ------------~~~--~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~---~~l~~~l~~~~~~~~~ 137 (411)
+.. ..++.|+.|.++.|.++|+..|++++. +++|.|+.+|.+.. ..++++++.|.+.+..
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg---~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s 155 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG---DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS 155 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC---CCceEEEeCCeeecCCchHHHHHHHHHHHhCCc
Confidence 111 347789999999999999999999997 78999999999863 2488999999888875
Q ss_pred eEEEEEecCcccccceeEEE----EcCCCCceeEEeccC--CCcccCcccceEEEeCHHHHHHhhhhhhccccccccccc
Q 015225 138 GTMLVIKVSAESAHQFGELI----ADPNTKELLHYTEKP--ETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQV 211 (411)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~v~----~d~~~~~v~~~~e~~--~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~ 211 (411)
++.+.+++.++.+.||++. .+....+|..+.||| ....|+++-.|-|+++|++|+.|++...
T Consensus 156 -vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~----------- 223 (291)
T COG1210 156 -VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKP----------- 223 (291)
T ss_pred -EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCC-----------
Confidence 6777888888899999987 441124899999998 4567999999999999999999987422
Q ss_pred chhhhhhhcccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 212 SSFEALQSATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
..++...+ +|.+..|++...+++|.++|..+|+|++..|++++..+..+.
T Consensus 224 ------------G~ggEiQL-TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 224 ------------GAGGEIQL-TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred ------------CCCCEeeH-HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 22355556 999999999999999999999999999999999998876544
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=4e-29 Score=224.45 Aligned_cols=181 Identities=25% Similarity=0.428 Sum_probs=148.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCC-----
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELK----- 78 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~----- 78 (411)
++||||||| .|+||+|+|..+||||+||+|+|||+|+|++|.++ |+++|+|++++..+.+++|++++ ..|+
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~ 76 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSL 76 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhc-cccccccCc
Confidence 589999999 99999999999999999999999999999999997 99999999998888999999874 2332
Q ss_pred cceEEeeCCCCCCChHHHHHH--HHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhc-----CCeeEEEEEecCccc--
Q 015225 79 VPVRYLKEDKPHGSAGGLYYF--RDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRY-----GGMGTMLVIKVSAES-- 149 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~~~l~~~--~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~-- 149 (411)
..+.++.+.+..++++++... ++.+ .++|++++||.+++.++.+++++|+++ ++++|+++.+.+...
T Consensus 77 ~~i~~~~~~~~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~ 152 (217)
T cd04197 77 MIVIIIMSEDCRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRT 152 (217)
T ss_pred ceEEEEeCCCcCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcccc
Confidence 356777777777888888653 3333 378999999999999999999999874 788898888873222
Q ss_pred --ccceeEEEEcCCCCceeEEeccCCCc--------------------ccCcccceEEEeCHHHH
Q 015225 150 --AHQFGELIADPNTKELLHYTEKPETF--------------------VSDLINCGVYVFTPDFF 192 (411)
Q Consensus 150 --~~~~g~v~~d~~~~~v~~~~e~~~~~--------------------~~~~~~~Giyi~~~~~~ 192 (411)
...++++..|.++++|+.+.|+|..+ .+++.++|+|+|+++++
T Consensus 153 ~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 153 RRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 11356788884558999999987432 38999999999999864
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.96 E-value=2.6e-28 Score=221.28 Aligned_cols=226 Identities=20% Similarity=0.319 Sum_probs=168.9
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++++.++ |+++|+|++++..+.+.+++++. .+..+.+..
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~ 74 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNP 74 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhcc---CCeEEEeCc
Confidence 6999999 99999999999999999999999999999999997 99999999998888888888652 233333333
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCCce
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTKEL 165 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~~v 165 (411)
+....|++++++.+++++. ++|++++||++++. ++++.|.+.++++++++.+........++....| .+++
T Consensus 75 ~~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 145 (229)
T cd02523 75 DYAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVL 145 (229)
T ss_pred chhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccce
Confidence 3346799999999999883 78999999999754 5677777778888888876422223334433333 3688
Q ss_pred eEEeccCCCcc-cCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCCC-
Q 015225 166 LHYTEKPETFV-SDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGKK- 243 (411)
Q Consensus 166 ~~~~e~~~~~~-~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~- 243 (411)
..+.+++..+. ..+.++|+|+|++++++.+.+......+.. .....+ +++++.++++.
T Consensus 146 ~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~-------------------~~~~~~-~d~i~~l~~~~~ 205 (229)
T cd02523 146 LGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAG-------------------RVNLYY-EDALQRLISEEG 205 (229)
T ss_pred EeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcc-------------------cccccH-HHHHHHHHhhcC
Confidence 88888875443 457899999999999988766443221100 011113 68888888744
Q ss_pred -ceEEEeecceeeecCCccchhhcc
Q 015225 244 -QLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 244 -~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
.++.+.. ++|.+|+++++|++|+
T Consensus 206 ~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 206 VKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 4445555 8999999999998874
No 49
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.96 E-value=6.6e-28 Score=213.81 Aligned_cols=187 Identities=25% Similarity=0.461 Sum_probs=153.0
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc----
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP---- 80 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~---- 80 (411)
||||||| +|+||+|+|...||+|+|++|+ |||+|+++++..+ |+++++|+++++.+.+.+++.+. +.|+.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~ 76 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNG 76 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCC
Confidence 6999999 9999999999999999999999 9999999999997 99999999999888899998764 334432
Q ss_pred -eEEee------CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccce
Q 015225 81 -VRYLK------EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQF 153 (411)
Q Consensus 81 -i~~v~------~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (411)
+.++. +++..|++++++.+++++....+++|++++||.+++.++..+++.|+++++++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~---------- 146 (200)
T cd02508 77 GLFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK---------- 146 (200)
T ss_pred CEEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh----------
Confidence 34432 3456899999999999986433478999999999999999999999888887776653
Q ss_pred eEEEEcCCCCceeEEeccCCCcccCcccceEEEeCHHHHH-HhhhhhhcccccccccccchhhhhhhcccCCCCceeeec
Q 015225 154 GELIADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFT-AIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLD 232 (411)
Q Consensus 154 g~v~~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (411)
.++|+|+|++++|. .+.+... .+...+.
T Consensus 147 --------------------------~~~g~yi~~~~~~~~~l~~~~~-------------------------~~~~~~~ 175 (200)
T cd02508 147 --------------------------ASMGIYIFSKDLLIELLEEDAA-------------------------DGSHDFG 175 (200)
T ss_pred --------------------------hcCEEEEEEHHHHHHHHHHHhc-------------------------cCcchhH
Confidence 56999999999985 4443211 0111233
Q ss_pred cchhhcccCCCceEEEeecceeeec
Q 015225 233 QDILSPLAGKKQLYTYETMDFWEQI 257 (411)
Q Consensus 233 ~d~l~~l~~~~~v~~~~~~~~~~~I 257 (411)
+|+++.+++++++++|..+++|.||
T Consensus 176 ~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 176 KDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHHhccCcEEEEEeCCeEecC
Confidence 8999999988999999999999986
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.95 E-value=5.4e-27 Score=212.90 Aligned_cols=223 Identities=22% Similarity=0.325 Sum_probs=166.8
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch---HHHHHHHhhhcccCCcceE
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE---REFALYVSSISNELKVPVR 82 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~---~~i~~~~~~~~~~~~~~i~ 82 (411)
+|||||| +|+||+|+|..+||+|+|++|+|||+|+++.+..+ |++++++++.... +.+.+++... ..+..+.
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~ 75 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKI-FDSRFIFICRDEHNTKFHLDESLKLL--APNATVV 75 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhcc-CCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEE
Confidence 4899999 99999999999999999999999999999999997 8999998875322 1122222221 1233443
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
+ .+....|++++++.++..+. .+++|++++||++++.++..+++.|.+.+.++++++... +...|+.+..| ++
T Consensus 76 ~-~~~~~~g~~~~l~~a~~~l~--~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d-~~ 148 (231)
T cd04183 76 E-LDGETLGAACTVLLAADLID--NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLD-EN 148 (231)
T ss_pred E-eCCCCCcHHHHHHHHHhhcC--CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEEC-CC
Confidence 3 34567899999999999884 147899999999999999999998877777767666653 34578999888 68
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHH-HH-HHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhccc
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPD-FF-TAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA 240 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~ 240 (411)
++|..+.+++. .+.+.++|+|+|+++ .| +.+.+....... ..+.+.+ .++++.++
T Consensus 149 ~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~--------------------~~~~~~~-~d~i~~~~ 205 (231)
T cd04183 149 GRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDS--------------------VNGEFYI-SPLYNELI 205 (231)
T ss_pred CCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhccc--------------------ccCcEEE-hHHHHHHH
Confidence 89999988743 356889999999997 43 444432111100 0122223 68899888
Q ss_pred CCC-ceEEEee-cceeeecCCccch
Q 015225 241 GKK-QLYTYET-MDFWEQIKTPGMS 263 (411)
Q Consensus 241 ~~~-~v~~~~~-~~~~~~I~t~~d~ 263 (411)
+++ ++.++.. .++|.+|+||++|
T Consensus 206 ~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 206 LDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HcCCEEEEEEeccccEEEcCChHhc
Confidence 776 6999998 5899999999987
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.94 E-value=1.5e-25 Score=207.65 Aligned_cols=247 Identities=15% Similarity=0.192 Sum_probs=170.0
Q ss_pred eEEEEEecCCCCCcccccCCC-CCCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLSF-NTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~-~~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
|++|||||| .|+||+|+|. .+||+|+|++| +|||+++++++..+.++++|+|++++.. +.+++++.+ ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 689999999 9999999997 79999999999 9999999999999734999999988643 455666654 2235
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhcc-CCCeEEEEcCCcccC--CChHHHHHHHHh---cCCeeEEEEEecCccccccee
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEE-NPSHIILLNCDVCCS--FPLPDLLEAHKR---YGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~-~~~~~lv~~~D~i~~--~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~g 154 (411)
+.++.+....||++++..++..+.+. +++.++|++||+++. .++.+.++.+.+ .+..+|+...+. ...+.||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 67777777889999999999888642 356899999999874 456666665443 567778887776 6668899
Q ss_pred EEEEcCCC--C---ceeEEeccCCCc--------ccCcccceEEEeCHHH-HHHhhhhhhcccccccccccch-hh-hhh
Q 015225 155 ELIADPNT--K---ELLHYTEKPETF--------VSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSS-FE-ALQ 218 (411)
Q Consensus 155 ~v~~d~~~--~---~v~~~~e~~~~~--------~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~-~~-~~~ 218 (411)
++..| ++ + +|.+|.|||+.. ...++|+|+|+|+++. ++.|.+..+...+......... ++ ...
T Consensus 153 yI~~~-~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (274)
T cd02509 153 YIEAG-EKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLR 231 (274)
T ss_pred EEEeC-CcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhh
Confidence 99988 44 2 899999999642 1247899999999864 4666655443321111000000 00 000
Q ss_pred h-cccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccc
Q 015225 219 S-ATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGM 262 (411)
Q Consensus 219 ~-~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d 262 (411)
. ..........+++..+ |.+..++.+++.+..|.|+|+...
T Consensus 232 ~~~~~~~~~~~~sidyav---me~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 232 LLEEAFAKIPSISIDYAV---MEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred hhHHHHhhCCCcccchHh---heeCCCcEEEecCCCcCcccCccc
Confidence 0 0000011222232222 334567888888889999999764
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=4.9e-26 Score=204.00 Aligned_cols=182 Identities=28% Similarity=0.476 Sum_probs=144.4
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcc---cCC--
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISN---ELK-- 78 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~---~~~-- 78 (411)
|+||||||| .|+||.|+|...||+|+|++|+|||+|++++|.++ |+++|+|+++++.+.+.+++.+... ..+
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMI 77 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCce
Confidence 689999999 99999999999999999999999999999999996 9999999999888788888876421 112
Q ss_pred cceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHH--HHhcCCeeEEEEEecCccc-------
Q 015225 79 VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEA--HKRYGGMGTMLVIKVSAES------- 149 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~------- 149 (411)
..+.+..+....|++++++.+++.+. ++|++++||++++.++..++++ +...+.++++++.......
T Consensus 78 v~~~~~~~~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (216)
T cd02507 78 VDVITSDLCESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKK 153 (216)
T ss_pred EEEEEccCCCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCcccccc
Confidence 23344455678899999999999884 7899999999999999999975 4455666666666543222
Q ss_pred ccceeEEEEcCCC--CceeEEeccCCC------------------cccCcccceEEEeCHHHH
Q 015225 150 AHQFGELIADPNT--KELLHYTEKPET------------------FVSDLINCGVYVFTPDFF 192 (411)
Q Consensus 150 ~~~~g~v~~d~~~--~~v~~~~e~~~~------------------~~~~~~~~Giyi~~~~~~ 192 (411)
...++.+..|+++ .+++.+.+++.. ..+++.++|+|+|+++++
T Consensus 154 ~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 154 TEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 4567888899555 466666665432 358999999999999863
No 53
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=6.1e-26 Score=203.17 Aligned_cols=182 Identities=28% Similarity=0.449 Sum_probs=147.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhc--ccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSIS--NELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~--~~~~~~ 80 (411)
|+||||||| +|+||+|+|...||+|+|++|+|||+|++++|.++ ++++|+|++++.. +.+++++.... ...+..
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~ 77 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLD 77 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCccee
Confidence 689999999 99999999999999999999999999999999996 9999999988644 56777776531 111233
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcc-----------c
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAE-----------S 149 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~ 149 (411)
+.+..+....|++++++.+.+.+. ++|++++||.+++.++..+++.|++.++.+|+++.+.... .
T Consensus 78 ~~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04198 78 EVTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKK 153 (214)
T ss_pred EEEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccC
Confidence 445556778899999999999873 7899999999999999999999999999999988875311 1
Q ss_pred ccceeEEEEcCCCCceeEEeccC------------------CCcccCcccceEEEeCHHHH
Q 015225 150 AHQFGELIADPNTKELLHYTEKP------------------ETFVSDLINCGVYVFTPDFF 192 (411)
Q Consensus 150 ~~~~g~v~~d~~~~~v~~~~e~~------------------~~~~~~~~~~Giyi~~~~~~ 192 (411)
...+.++..|+++++++.+.... -...+++.++|+|+|+++++
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 23466788887889999887521 12358999999999998763
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.93 E-value=1.2e-24 Score=197.30 Aligned_cols=218 Identities=23% Similarity=0.373 Sum_probs=168.0
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| .|+||++ ..||+|+|++|+|||+|+++++.++ ++++++|++++..+.+.+++.+ . .+.++.
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~----~--~~~~~~ 68 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALAN----P--NVEFVL 68 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCC----C--CcEEEE
Confidence 6999999 9999987 7899999999999999999999997 8999999888777777777754 2 345566
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
+....|++++++.+++.+.. ..++|++++||.++ ..++..+++.|.+.++++++...+. .++..|+.+..| +++
T Consensus 69 ~~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~-~~~ 144 (229)
T cd02540 69 QEEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRD-GNG 144 (229)
T ss_pred CCCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEc-CCC
Confidence 66668999999999998852 24789999999954 6679999999987777777777766 567788888777 678
Q ss_pred ceeEEeccCCCc----ccCcccceEEEeCHHH-HHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 164 ELLHYTEKPETF----VSDLINCGVYVFTPDF-FTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 164 ~v~~~~e~~~~~----~~~~~~~Giyi~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
+|..+.|++... ...+.++|+|+|+++. ++.+.+..... ....+.+ +++++.
T Consensus 145 ~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~----------------------~~~~~~~-~d~~~~ 201 (229)
T cd02540 145 KVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNN----------------------AQGEYYL-TDIIAL 201 (229)
T ss_pred CEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHccccc----------------------CCCcEEH-HHHHHH
Confidence 999999876421 1367899999999865 45554432110 0122224 788998
Q ss_pred ccCCC-ceEEEeecce--eeecCCccc
Q 015225 239 LAGKK-QLYTYETMDF--WEQIKTPGM 262 (411)
Q Consensus 239 l~~~~-~v~~~~~~~~--~~~I~t~~d 262 (411)
+++.+ +++++..+|+ |+.|++|.+
T Consensus 202 ~~~~g~~v~~~~~~~~~~~~~~~~~~~ 228 (229)
T cd02540 202 AVADGLKVAAVLADDEEEVLGVNDRVQ 228 (229)
T ss_pred HHHCCCEEEEEEcCCcceEecCCChHh
Confidence 88765 7999999875 566677765
No 55
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.2e-24 Score=187.99 Aligned_cols=230 Identities=15% Similarity=0.248 Sum_probs=156.4
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEec-ccchHHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIG-FYEEREFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~-~~~~~~i~~~~~~~~~~~~~ 79 (411)
|..|+||||||| +|+||+| ..||||+.++|+++|+|++++|.++ |++++++|+ ++..+.+++++.++ .+..
T Consensus 1 ~~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~--~~~~ 72 (239)
T COG1213 1 MHPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKY--PFNA 72 (239)
T ss_pred CCceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcC--Ccce
Confidence 889999999999 9999999 9999999999999999999999997 999999998 77788888888763 1223
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
++.+.+.++..+++.||+.|.+++. +.|++++||+++... +++...+..+...++. ..+......-.....+
T Consensus 73 ~iv~N~~y~ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~---~~e~l~~a~~~~li~d-~~~~~~~~~ea~kv~~ 144 (239)
T COG1213 73 KIVINSDYEKTNTGYSLLLAKDYMD----GRFILVMSDHVYEPS---ILERLLEAPGEGLIVD-RRPRYVGVEEATKVKD 144 (239)
T ss_pred EEEeCCCcccCCceeEEeeehhhhc----CcEEEEeCCEeecHH---HHHHHHhCcCCcEEEe-ccccccccCceeEEEe
Confidence 3333344455567999999999985 779999999998644 3343344333322332 2221222222223444
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
++|++..+..+-. ..+..++|++.+++++|..+.+...+... +.+ .++....
T Consensus 145 -e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~~------------------------~~~-~~~~~~~ 196 (239)
T COG1213 145 -EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERSE------------------------YDY-REVEKEA 196 (239)
T ss_pred -cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhhh------------------------HHH-HHHHHHh
Confidence 6899999887643 46678899999999988877665432211 000 1111111
Q ss_pred c-CCCceEEEeecceeeecCCccchhhcchHHHhhh
Q 015225 240 A-GKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALF 274 (411)
Q Consensus 240 ~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~ 274 (411)
. ....+-......+|.+|+||+|+.++.+.+....
T Consensus 197 ~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 197 GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred CCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 0 0011111111348999999999999988776544
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=2.2e-23 Score=190.86 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=158.9
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||. +|+|+|++|+|||+|+++.|.+. ++++|+|++++ +.+.+++.. ++.++.
T Consensus 2 ~~~~iIlA~g--~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~--~~i~~~~~~----~~~~v~ 66 (245)
T PRK05450 2 KFLIIIPARY--ASTRLP------GKPLADIGGKPMIVRVYERASKA-GADRVVVATDD--ERIADAVEA----FGGEVV 66 (245)
T ss_pred ceEEEEecCC--CCCCCC------CCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCc--HHHHHHHHH----cCCEEE
Confidence 5889999999 999994 59999999999999999999997 99999988763 446666643 345555
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecC----cccccceeEE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVS----AESAHQFGEL 156 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~g~v 156 (411)
+..+....|+++.. .+...+.....+.+++++||+++ ...+..+++.|.+.+.+.+++..+.. ..++..++++
T Consensus 67 ~~~~~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (245)
T PRK05450 67 MTSPDHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV 145 (245)
T ss_pred ECCCcCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE
Confidence 55455555665443 34444421124678999999964 56789999988766566555554431 1234455644
Q ss_pred EEcCCCCceeEEeccCCC----------cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCC
Q 015225 157 IADPNTKELLHYTEKPET----------FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPV 226 (411)
Q Consensus 157 ~~d~~~~~v~~~~e~~~~----------~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (411)
.| ++++|+.|.|+|.. ..+.+.++|+|+|++++++.+.+..+...
T Consensus 146 -~d-~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~----------------------- 200 (245)
T PRK05450 146 -LD-ADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPL----------------------- 200 (245)
T ss_pred -eC-CCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCcc-----------------------
Confidence 77 68999999998731 23589999999999999988776321100
Q ss_pred ceeeeccchhhcccCCCceEEEeecc-eeeecCCccchhhcchHH
Q 015225 227 DFVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~~~ 270 (411)
+.... .++++.+.++.+++++..++ +|.+||+|+||.+|++.+
T Consensus 201 ~~~~~-~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIES-LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchh-HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 00000 12234344556899999986 999999999999998643
No 57
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.91 E-value=2.3e-23 Score=206.29 Aligned_cols=252 Identities=14% Similarity=0.201 Sum_probs=167.1
Q ss_pred eEEEEEecCCCCCcccccCCCC-CCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFN-TPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
|.+|||||| .|+||+|+|.. +||+|+|+.| +|||+|+++.|..+ ++++++|+++... ..+++.+.. ++.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~----~~~~ 73 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLRE----IGKL 73 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHH----cCCC
Confidence 679999999 99999999996 8999999976 89999999999997 8999998887443 334444443 3333
Q ss_pred -eEEeeCCCCCCChHHHHHHHHHhhcc--CCCeEEEEcCCcccC--CChHHHHHHH---HhcCCeeEEEEEecCcccccc
Q 015225 81 -VRYLKEDKPHGSAGGLYYFRDMIMEE--NPSHIILLNCDVCCS--FPLPDLLEAH---KRYGGMGTMLVIKVSAESAHQ 152 (411)
Q Consensus 81 -i~~v~~~~~~g~~~~l~~~~~~i~~~--~~~~~lv~~~D~i~~--~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 152 (411)
..++.++...||++++..+...+.+. .++.++|++||++.. ..+..+++++ .+.+..+++...+. ...+.
T Consensus 74 ~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~ 151 (468)
T TIGR01479 74 ASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETG 151 (468)
T ss_pred cceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCC
Confidence 35777788889999998877766432 234589999998763 3478887764 33455666666554 66689
Q ss_pred eeEEEEcCC-----CCceeEEeccCCCcc--------cCcccceEEEeCHH-HHHHhhhhhhcccccccccccch-h--h
Q 015225 153 FGELIADPN-----TKELLHYTEKPETFV--------SDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSS-F--E 215 (411)
Q Consensus 153 ~g~v~~d~~-----~~~v~~~~e~~~~~~--------~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~-~--~ 215 (411)
||++..|++ .++|..|.|||+... ..++|+|+|+|+++ +++.|.+..+...+......... + +
T Consensus 152 YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~ 231 (468)
T TIGR01479 152 YGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLD 231 (468)
T ss_pred ceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcc
Confidence 999998731 258999999986421 35899999999975 44555554433211110000000 0 0
Q ss_pred hhhh-cccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcc
Q 015225 216 ALQS-ATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCS 267 (411)
Q Consensus 216 ~~~~-~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~ 267 (411)
...+ ..........+++..+ |.+..++.+++....|.|+++++++++..
T Consensus 232 ~~~~~~~~~~~~~~iSiDyav---mEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 232 FIRLDKEAFEQCPSESIDYAV---MEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred cceeCHHHHhhCcCCCeeeee---eEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 0000 0000001111221222 33445789999888999999999887764
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.91 E-value=4.5e-23 Score=188.11 Aligned_cols=220 Identities=19% Similarity=0.204 Sum_probs=156.4
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||. ||+|+|++|+|||+|+++.+.+++++++|+|++++ +.+.+++.+ ++.++.
T Consensus 1 ~~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~ 66 (239)
T cd02517 1 KVIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVV 66 (239)
T ss_pred CEEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEE
Confidence 3689999999 999995 59999999999999999999985479999998764 456666654 344555
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhc-CCeeEEEEEecCccccc---ceeE-
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRY-GGMGTMLVIKVSAESAH---QFGE- 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~---~~g~- 155 (411)
+..+....|+++ +..+++.+. ...+.|++++||.++ ...+..+++.|.+. +.++++++.+. .++. .++.
T Consensus 67 ~~~~~~~~gt~~-~~~~~~~~~-~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 142 (239)
T cd02517 67 MTSPDHPSGTDR-IAEVAEKLD-ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPI--SDEEELFNPNVV 142 (239)
T ss_pred EcCcccCchhHH-HHHHHHhcC-CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEc--CCHHHccCCCCC
Confidence 444444567764 666666553 113779999999853 66789999988766 67777777765 3322 2333
Q ss_pred -EEEcCCCCceeEEeccCC-------CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCc
Q 015225 156 -LIADPNTKELLHYTEKPE-------TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVD 227 (411)
Q Consensus 156 -v~~d~~~~~v~~~~e~~~-------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (411)
|..| ++++|+.+.+++. .+.+.+.++|+|+|++++++.+.+.... ++
T Consensus 143 ~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~--------~~---------------- 197 (239)
T cd02517 143 KVVLD-KDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPS--------PL---------------- 197 (239)
T ss_pred EEEEC-CCCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCc--------hh----------------
Confidence 5566 5788988876532 1236789999999999999877553110 00
Q ss_pred eeeeccchhh--cccCC-CceEEEeecceeeecCCccchhhcch
Q 015225 228 FVRLDQDILS--PLAGK-KQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 228 ~~~l~~d~l~--~l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
.+ ++.+. .+++. .+++++..+++|.+|+||++|.++++
T Consensus 198 --~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 198 --EQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred --hh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 01 22222 23444 46999988889999999999998864
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.89 E-value=7.4e-22 Score=180.00 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=153.6
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.|||||+| .|+||. +|+|+|++|+|||+|+++.+.+++++++|+|++++ +.+.+++.. ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 5889999999 999994 49999999999999999999996479999998864 456677654 455555
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCC-eeEEEEEecCc--c--cccceeE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGG-MGTMLVIKVSA--E--SAHQFGE 155 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~-~~~~~~~~~~~--~--~~~~~g~ 155 (411)
+..+....|++ .+..+.+.+. .+.|++++||.++ ..++..+++.+.+.+. ++++++.+... . ++..++.
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 143 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV 143 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE
Confidence 54444445665 4666666653 4789999999864 6779999998876543 44445544311 1 1333443
Q ss_pred EEEcCCCCceeEEeccC--C--C--cccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCcee
Q 015225 156 LIADPNTKELLHYTEKP--E--T--FVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFV 229 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~--~--~--~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (411)
..+ ++++++.+.++| . + ..+.+.++|+|+|++++|..+.+.... +..
T Consensus 144 -~~~-~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~-------------------------~~~ 196 (238)
T PRK13368 144 -VVD-KNGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET-------------------------PLE 196 (238)
T ss_pred -EEC-CCCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCC-------------------------hhh
Confidence 445 468999988653 1 1 114478999999999999876542110 000
Q ss_pred eecc-chhhcccCCCceEEEeecceeeecCCccchhhcch
Q 015225 230 RLDQ-DILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 230 ~l~~-d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
.+.. +++..+..+.++.++..+++|.||++|+||..++.
T Consensus 197 ~~~~~~~~~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 197 QIESLEQLRALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 1112 45533335557999998899999999999998864
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=3.7e-20 Score=153.36 Aligned_cols=170 Identities=21% Similarity=0.376 Sum_probs=124.3
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.||||||| .||||.|+|.++||+|++|.|+|||+++++.|.++ ||.+|+||+++..++. +|+.+ ++++++.+
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvy 73 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQF-EYLKD---KYDVTLVY 73 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHH-HHHHH---hcCeEEEe
Confidence 679999999 99999999999999999999999999999999997 9999999999887764 56664 46777777
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK 163 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~ 163 (411)
.+.........+++.|+++++ ...++.+|.....+ ++..+..+. .- ....+. ....+|- ...+ .++
T Consensus 74 N~kY~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN---if~~~~~~S-~Y-fav~~~--~~tnEw~-l~~~-~~~ 139 (231)
T COG4750 74 NPKYREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN---IFLTKESHS-KY-FAVYRS--GKTNEWL-LIYN-SDG 139 (231)
T ss_pred CchHHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh---hhhcCcccc-eE-EEEEec--CCCceeE-EEEc-CCC
Confidence 776666788999999999995 56777999875332 222222111 11 122222 2333443 3444 588
Q ss_pred ceeEEeccCCCcccCcccceEEEeCHHHHHHhhh
Q 015225 164 ELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 164 ~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~ 197 (411)
+|+++.-.. ...+..+|+.+|+...-+.+..
T Consensus 140 ki~~v~Igg---~~~~imsG~sff~~~~~~ki~~ 170 (231)
T COG4750 140 KITRVDIGG---LNGYIMSGISFFDAQFSNKIKK 170 (231)
T ss_pred cEEEEEecC---cccceEeeeeeecchhHHHHHH
Confidence 999886542 2456788999999865444443
No 61
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.82 E-value=1.4e-19 Score=177.64 Aligned_cols=252 Identities=15% Similarity=0.173 Sum_probs=163.9
Q ss_pred ceEEEEEecCCCCCcccccCCCC-CCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccc-hHHHHHHHhhhcccCCc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFN-TPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYE-EREFALYVSSISNELKV 79 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~-~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~-~~~i~~~~~~~~~~~~~ 79 (411)
+|.+|||||| .|+||+|+|.. .||+|+|+.| +|||+++++.+... ++.+.+|+++.. .+.+++.+.+. +.
T Consensus 5 ~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~----~~ 77 (478)
T PRK15460 5 KLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQL----NK 77 (478)
T ss_pred ceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhc----CC
Confidence 4799999999 99999999997 6999999965 69999999999986 777776777643 35555555542 21
Q ss_pred -ceEEeeCCCCCCChHHHHHHHHHhhccC---CCeEEEEcCCcccCC--ChHHHHHHHH---hcCCeeEEEEEecCcccc
Q 015225 80 -PVRYLKEDKPHGSAGGLYYFRDMIMEEN---PSHIILLNCDVCCSF--PLPDLLEAHK---RYGGMGTMLVIKVSAESA 150 (411)
Q Consensus 80 -~i~~v~~~~~~g~~~~l~~~~~~i~~~~---~~~~lv~~~D~i~~~--~l~~~l~~~~---~~~~~~~~~~~~~~~~~~ 150 (411)
.-.++.++...+|+.++..|.-.+.+.. +..++++++|++... .+.+.++... +.+..+|+...+. ...
T Consensus 78 ~~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt--~Pe 155 (478)
T PRK15460 78 LTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD--LPE 155 (478)
T ss_pred ccccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC--CCC
Confidence 2366777788899999888776665432 356889999998522 2444444332 2356666666665 677
Q ss_pred cceeEEEEcCCC--------CceeEEeccCCC--------cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccch
Q 015225 151 HQFGELIADPNT--------KELLHYTEKPET--------FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSS 213 (411)
Q Consensus 151 ~~~g~v~~d~~~--------~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 213 (411)
+.||++..+..- .+|.+|.|||+. .-..++|+|+|+|+.+ +++.|++..+.............
T Consensus 156 TgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~ 235 (478)
T PRK15460 156 TGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAV 235 (478)
T ss_pred CCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhc
Confidence 889999876221 269999999963 1246899999999985 56777776554322111100000
Q ss_pred -h--hhhhh-cccCCCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhc
Q 015225 214 -F--EALQS-ATRTLPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 214 -~--~~~~~-~~~~~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
+ +...+ ..........+++..+ |.+..++.+++...-|.|+|+..++.+.
T Consensus 236 ~~~~~~~~l~~~~~~~~~~iSiDyav---mEk~~~v~vvp~~f~WsDvGsW~sl~~~ 289 (478)
T PRK15460 236 DPDLDFIRVDEEAFLACPEESVDYAV---MERTADAVVVPMDAGWSDVGSWSSLWEI 289 (478)
T ss_pred cCcccceeeCHHHHhhCcCcchhhhh---hcccCceEEEecCCCccccCCHHHHHHh
Confidence 0 00000 0000011222232222 3344568888888889999998877665
No 62
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=7.3e-19 Score=158.50 Aligned_cols=255 Identities=14% Similarity=0.199 Sum_probs=166.3
Q ss_pred ceEEEEEecCCCCCcccccCCC-CCCccCccc-CCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSF-NTPKPLFPL-AGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKV 79 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~-~~pK~llpi-~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~ 79 (411)
.|..|||||| .|+|||||++ ..||++|++ ++++|++.+++++....+.+++++|++.++ ..+++.+.+.... .
T Consensus 1 ~~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~--~ 76 (333)
T COG0836 1 MMIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE--N 76 (333)
T ss_pred CceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc--c
Confidence 3789999999 9999999998 679999999 458999999999999657899999998654 4455555542111 1
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccC-CCeEEEEcCCcccCC--ChHHHHHHH---HhcCCeeEEEEEecCcccccce
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEEN-PSHIILLNCDVCCSF--PLPDLLEAH---KRYGGMGTMLVIKVSAESAHQF 153 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~-~~~~lv~~~D~i~~~--~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (411)
.-.++.++....|+.++..+.-.+.+.. +.-++|+++|++... .+.+.++.. .+.+..+|+...+. ...+.|
T Consensus 77 ~~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGY 154 (333)
T COG0836 77 AAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGY 154 (333)
T ss_pred ccceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCC--CCccCc
Confidence 1125666778899999988766554433 446889999998632 355555543 34456667666665 677889
Q ss_pred eEEEEcCC-----CCceeEEeccCCC--------cccCcccceEEEeCHH-HHHHhhhhhhcccccccccccchh--hhh
Q 015225 154 GELIADPN-----TKELLHYTEKPET--------FVSDLINCGVYVFTPD-FFTAIQGVLTHREDRANIRQVSSF--EAL 217 (411)
Q Consensus 154 g~v~~d~~-----~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~-~~~~l~~~~~~~~~~~~~~~~~~~--~~~ 217 (411)
|++..... .-+|.+|.|||+. .-..++|+|+|+|+.. +++.+++..+...+......-... +.+
T Consensus 155 GYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~ 234 (333)
T COG0836 155 GYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSV 234 (333)
T ss_pred ceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchh
Confidence 99986311 3378999999963 2247899999999985 567777665443211110000000 000
Q ss_pred hhcccC-CCCceeeeccchhhcccCCCceEEEeecceeeecCCccchhhc
Q 015225 218 QSATRT-LPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 266 (411)
Q Consensus 218 ~~~~~~-~~~~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a 266 (411)
.+..+. ......+++..+ |.+..++.+++..-.|-|+|+...+++.
T Consensus 235 ~l~~e~f~~~p~iSIDYAi---MEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 235 RLDNEAYEEIPAISIDYAI---MEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred cccHHHHhhCcccchhHHH---HhhhcceEEEecCCCcccccCHHHHHHH
Confidence 000000 011222222222 4456789999988899999998766554
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.79 E-value=3.1e-18 Score=159.41 Aligned_cols=228 Identities=15% Similarity=0.157 Sum_probs=152.2
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+||||+| .|+||. +|+|++++|+|||+|+++.+..+..++.|+ ++ .+.+.+.+++.+ ++.++.
T Consensus 47 ~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VV-V~-~~~e~I~~~~~~----~~v~vi 112 (293)
T PLN02917 47 RVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIV-VA-TDDERIAECCRG----FGADVI 112 (293)
T ss_pred cEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEE-EE-CChHHHHHHHHH----cCCEEE
Confidence 4679999999 999994 499999999999999999999863345544 43 334556666653 233333
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEE--ecCcccccceeEEE-
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVI--KVSAESAHQFGELI- 157 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~g~v~- 157 (411)
...+....|+++. ..+.+.+.. ..+.+++++||.++ ...+..+++.+.+. .++++++. ....+++..||.+.
T Consensus 113 ~~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~v 189 (293)
T PLN02917 113 MTSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKC 189 (293)
T ss_pred eCCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEE
Confidence 3334455576665 567777742 24789999999985 56689999987644 33333332 12226778899874
Q ss_pred -EcCCCCceeEEecc-----CC----CcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCc
Q 015225 158 -ADPNTKELLHYTEK-----PE----TFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVD 227 (411)
Q Consensus 158 -~d~~~~~v~~~~e~-----~~----~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (411)
.| ++|+++.|..+ .+ .....+.++|+|.|+.+.|..+.+..+ .+.+.+||+
T Consensus 190 v~~-~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~----~n~e~e~yL-------------- 250 (293)
T PLN02917 190 VVD-NQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPP----TPLQLEEDL-------------- 250 (293)
T ss_pred EEC-CCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCC----Ccccchhcc--------------
Confidence 67 67886644422 11 122357899999999998877754432 223344443
Q ss_pred eeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHh
Q 015225 228 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLA 272 (411)
Q Consensus 228 ~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~ 272 (411)
+|+. .+.++.++.++..+....-|+|++|+.++++.+.+
T Consensus 251 -----tdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 251 -----EQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred -----HHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 5665 33344478877765556689999999999876643
No 64
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.76 E-value=3.9e-18 Score=152.84 Aligned_cols=149 Identities=18% Similarity=0.188 Sum_probs=101.1
Q ss_pred ceeeeccchhhcccCCCceEEEeecceeeecCCccchhhcchHHHhhhhhcC-------ccc--ccc-CCCCCCcEEcCC
Q 015225 227 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSSLYLALFKITS-------PQL--LAS-GNGITSATIAGD 296 (411)
Q Consensus 227 ~~~~l~~d~l~~l~~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~l~~~~~~~-------~~~--~~~-~~~~~~~~~~~~ 296 (411)
++.+| +|.++.|++.+ .+...+||.|+ ++|+++++.+|+.+.... +.. ... ....+++.+.++
T Consensus 26 ~~~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~ 98 (231)
T TIGR03532 26 EQVDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQ 98 (231)
T ss_pred ccccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCC
Confidence 44556 78999998766 77888999999 999999999998753100 000 000 011245556666
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCCCEECCCcEEecC
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~~~~i~~~ 366 (411)
++||+++.|++++.|.++++||++|.|++++.|. +++||++|.|+.++.|.+ ++|+++|.||.++.+..+
T Consensus 99 v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g 178 (231)
T TIGR03532 99 VIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEG 178 (231)
T ss_pred eEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCC
Confidence 7777777777777777777777777777777775 677777777777777753 566666666666666655
Q ss_pred CcCCcccceeEECCCCEECCCcEEc
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||+++.|+++++|.
T Consensus 179 ---------~~Ig~~~~IgagsvV~ 194 (231)
T TIGR03532 179 ---------VRVGKGAVVAAGAIVT 194 (231)
T ss_pred ---------CEECCCCEECCCCEEc
Confidence 6666666666666663
No 65
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.67 E-value=5.2e-15 Score=134.29 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=141.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
+||+|+| .|+||. +|+|++++|+|||.|+++.+... ++++|+|++.. +.+.+++.+ ++.++....
T Consensus 2 ~iIpA~g--~s~R~~------~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~--~~i~~~~~~----~g~~~v~~~ 66 (238)
T TIGR00466 2 VIIPARL--ASSRLP------GKPLEDIFGKPMIVHVAENANES-GADRCIVATDD--ESVAQTCQK----FGIEVCMTS 66 (238)
T ss_pred EEEecCC--CCCCCC------CCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCH--HHHHHHHHH----cCCEEEEeC
Confidence 7999999 999994 69999999999999999999986 79999998753 345555543 343333222
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccc-----ceeEEEE
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAH-----QFGELIA 158 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~g~v~~ 158 (411)
.....| .+.+..+.+.+.....+.++++.||.++ ...+..+++.+.+..++++.+..+. .+.. ....+..
T Consensus 67 ~~~~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~--~d~~~~~~p~~vk~v~ 143 (238)
T TIGR00466 67 KHHNSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKI--HDAEEAFNPNAVKVVL 143 (238)
T ss_pred CCCCCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeec--CCHHHccCCCceEEEe
Confidence 233333 3344444444421124678899999985 5568999998765556666666665 2311 1233455
Q ss_pred cCCCCceeEEeccCC-----------Cccc--CcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCC
Q 015225 159 DPNTKELLHYTEKPE-----------TFVS--DLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLP 225 (411)
Q Consensus 159 d~~~~~v~~~~e~~~-----------~~~~--~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (411)
| .+++++.|.+.+- ++.. .+...|+|.|+++.|..+..+.+...+
T Consensus 144 ~-~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le--------------------- 201 (238)
T TIGR00466 144 D-SQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLE--------------------- 201 (238)
T ss_pred C-CCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCccc---------------------
Confidence 6 5777766665411 1111 466899999999999888765432211
Q ss_pred CceeeeccchhhcccCCCceEEEeecce-eeecCCccch
Q 015225 226 VDFVRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 263 (411)
Q Consensus 226 ~~~~~l~~d~l~~l~~~~~v~~~~~~~~-~~~I~t~~d~ 263 (411)
...+ -+-|+.|..+.++.+...++. -..||||+|+
T Consensus 202 -~~e~--leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 -EIEK--LEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred -ccch--hHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1111 234666667778988877655 4589999986
No 66
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.67 E-value=2e-15 Score=129.11 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=95.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
+++.+.++++||+++.|++++.|+++++||++|.|++++.|.+|+|++++.|++++.+.+|+|++++.|++++.+.+...
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~ 107 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRF 107 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCc
Confidence 56777888899999999999999988999999999999999999999999999999999999999999999998865221
Q ss_pred CCcc--c-------------ceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 369 YNAK--L-------------GITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 369 ~~~~--~-------------~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
.+.. + -.++|+++++|+.++.+ .++.|++++.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ag 159 (163)
T cd05636 108 DDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPG 159 (163)
T ss_pred CCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCC
Confidence 1100 0 12899999999999888 57888888777664
No 67
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.66 E-value=1.5e-15 Score=145.72 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=141.3
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| .|+||.. ..||+|++++|+|||+|+++.|...+.+++|+|++++......+.+.. ... .
T Consensus 3 mm~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~-~ 73 (378)
T PRK09382 3 MSDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIK-F 73 (378)
T ss_pred CCcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCC-e
Confidence 778899999999 9999953 689999999999999999999999733799999887654333222211 111 1
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
+.++. ...+..++++.+++.+. .+.+++..||.++ ...+..+++...+ .++++...++ .+...|+....
T Consensus 74 v~~v~--gG~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv--~Dtik~~~~tl 144 (378)
T PRK09382 74 VTLVT--GGATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPV--ADTLKRANETV 144 (378)
T ss_pred EEEeC--CCchHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEe--ccCcEEeeeEc
Confidence 34433 33457889999999885 4788999999985 4457888876543 3566777776 67777765555
Q ss_pred cCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhc
Q 015225 159 DPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSP 238 (411)
Q Consensus 159 d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 238 (411)
| .+.+..+ +.|+...... +++... +.+.+ +|..+.
T Consensus 145 d--R~~l~~~-QTPQ~f~~~~-----------l~~a~~------------------------------~~~~~-TDd~sl 179 (378)
T PRK09382 145 D--REGLKLI-QTPQLSRTKT-----------LKAAAD------------------------------GRGDF-TDDSSA 179 (378)
T ss_pred C--cccEEEE-ECCCCCCHHH-----------HHHHHh------------------------------CCCCc-ccHHHH
Confidence 5 3355444 6665432211 111110 01112 565555
Q ss_pred ccCC-CceEEEeecceeeecCCccchhhcchHH
Q 015225 239 LAGK-KQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 239 l~~~-~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
+... .++..+..+..|..|++|+|+..++..+
T Consensus 180 ~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l 212 (378)
T PRK09382 180 AEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL 212 (378)
T ss_pred HHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 5544 4889998888999999999999987654
No 68
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.65 E-value=3.4e-15 Score=135.02 Aligned_cols=218 Identities=17% Similarity=0.204 Sum_probs=139.3
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~ 79 (411)
|+++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+...+.+++|+|+++... +.+.+.... .. .
T Consensus 1 ~~~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~ 71 (227)
T PRK00155 1 MMMVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-P 71 (227)
T ss_pred CCceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-C
Confidence 788999999999 9999953 579999999999999999999998635899999987554 333222211 11 2
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
.+.++.. ..+.+++++.+++.+. ..+.++++.||.++ ...+..+++.+.+.+ +++...+. .+. +..+
T Consensus 72 ~~~~~~~--~~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~--~~~--~~~v- 140 (227)
T PRK00155 72 KVTVVAG--GAERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV--KDT--IKRS- 140 (227)
T ss_pred ceEEeCC--cchHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec--ccc--EEEE-
Confidence 3344432 2357899999988773 14688999999985 556899999876553 33344443 222 2222
Q ss_pred EcCCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhh
Q 015225 158 ADPNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILS 237 (411)
Q Consensus 158 ~d~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 237 (411)
+ +++.+..+.+.. ...... +.|.|+.+.+..+.+.... .+++ + +|...
T Consensus 141 -~-~~g~~~~~~~r~---~~~~~~-~p~~f~~~~l~~~~~~~~~------------------------~~~~-~-~d~~~ 188 (227)
T PRK00155 141 -D-DGGGIVDTPDRS---GLWAAQ-TPQGFRIELLREALARALA------------------------EGKT-I-TDDAS 188 (227)
T ss_pred -c-CCCceeecCChH---Hheeee-CCccchHHHHHHHHHHHHh------------------------cCCC-c-CcHHH
Confidence 4 456666553221 111222 4788888776555433211 0111 1 33333
Q ss_pred cccC-CCceEEEeecceeeecCCccchhhcchHH
Q 015225 238 PLAG-KKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 238 ~l~~-~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
.+.+ +.++..+..+..+.+|+|++|+..+...+
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~ 222 (227)
T PRK00155 189 AVERLGKPVRLVEGRYDNIKITTPEDLALAEAIL 222 (227)
T ss_pred HHHHcCCCeEEEecCcccccCCCHHHHHHHHHHH
Confidence 2322 33677777666678999999998887644
No 69
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.64 E-value=8.1e-15 Score=132.18 Aligned_cols=207 Identities=17% Similarity=0.142 Sum_probs=136.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||. +|+|++++|+|||+|+++.+.+...+++|+|++. .+.+.+++.. ++..+.
T Consensus 1 ~~~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~----~~~~~~ 66 (223)
T cd02513 1 KILAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK----YGAEVP 66 (223)
T ss_pred CeEEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH----hCCCce
Confidence 4679999999 999994 4999999999999999999998633888888764 2344555443 233223
Q ss_pred EeeC----CCCCCChHHHHHHHHHhhcc--CCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 83 YLKE----DKPHGSAGGLYYFRDMIMEE--NPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 83 ~v~~----~~~~g~~~~l~~~~~~i~~~--~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
+... ....|+.+++..+++.+... ..+.++++.||.++ ...+..+++.+.+.++++++.+.+. .+...++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 144 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF--HRFPWRA 144 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec--CcCcHHh
Confidence 3321 23447788999998877521 13789999999985 5679999999887777777777665 3333333
Q ss_pred EEEEcCCCCceeEEecc-----CCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCcee
Q 015225 155 ELIADPNTKELLHYTEK-----PETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFV 229 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~-----~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (411)
.+..+ ++..+..+.+. .+.+.....++|+|+++++.+.....
T Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~-------------------------------- 191 (223)
T cd02513 145 LGLDD-NGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS-------------------------------- 191 (223)
T ss_pred eeecc-CCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC--------------------------------
Confidence 33322 12122222121 12345566788999999987632110
Q ss_pred eeccchhhcccCCCceEEEeecc-eeeecCCccchhhcch
Q 015225 230 RLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSS 268 (411)
Q Consensus 230 ~l~~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~ 268 (411)
.+ .+++..+.... ...+|++++|+..+..
T Consensus 192 -----~~-----g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 -----FF-----GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred -----cc-----CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 01 34666665554 5789999999877743
No 70
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.64 E-value=2.6e-15 Score=125.10 Aligned_cols=111 Identities=28% Similarity=0.354 Sum_probs=100.1
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
.+++.+.+++.||+++.|+++|+|++ ...||+++.|.+||+|+ .++||++|+||+++.|.+|+|+++|.||-
T Consensus 21 a~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGm 100 (176)
T COG0663 21 APSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGM 100 (176)
T ss_pred CCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEec
Confidence 46889999999999999999999995 57999999999999998 58999999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCCC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQE 407 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~~ 407 (411)
++.|.+| +.||++|.||+|+.|......|...+..+.|-
T Consensus 101 gA~vldg---------a~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pa 139 (176)
T COG0663 101 GATVLDG---------AVIGDGSIVGAGALVTPGKEIPGGSLVVGSPA 139 (176)
T ss_pred CceEeCC---------cEECCCcEEccCCcccCCcCCCCCeEeecCcc
Confidence 9999999 99999999999999976666666666666554
No 71
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.63 E-value=7.9e-15 Score=131.79 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=139.1
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+...+.+++|+|++++........+... .....+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~--~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKY--GLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhc--ccCCCeEEE
Confidence 58999999 9999975 4799999999999999999999986348999998876553333322111 112234554
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
... .+..++++.+++.+.....+.++++.||.++ ...++.+++.+.+.+. .+...+. .+ +....| ++
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~--~~----~~~~~~-~~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV--TD----TIKRVD-DD 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec--cc----cEEEec-CC
Confidence 432 3567889999988731235789999999985 5568999998865443 2333333 12 123345 57
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccCC
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAGK 242 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 242 (411)
+.+.++.+.. ......++ ++|+.+.+..+....... +.+ + +|....+.+.
T Consensus 144 g~~~~~~~r~---~~~~~~~P-~~f~~~~~~~~~~~~~~~------------------------~~~-~-td~~~~~~~~ 193 (218)
T cd02516 144 GVVVETLDRE---KLWAAQTP-QAFRLDLLLKAHRQASEE------------------------GEE-F-TDDASLVEAA 193 (218)
T ss_pred CceeecCChH---HhhhhcCC-CcccHHHHHHHHHHHHhc------------------------CCC-c-CcHHHHHHHc
Confidence 8888877642 24456777 899988776555432211 111 1 4444433333
Q ss_pred -CceEEEeecceeeecCCccchhh
Q 015225 243 -KQLYTYETMDFWEQIKTPGMSLK 265 (411)
Q Consensus 243 -~~v~~~~~~~~~~~I~t~~d~~~ 265 (411)
.++..+.......+|+||+|+..
T Consensus 194 ~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 194 GGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CCCeEEEecCcccccCCCHHHHhh
Confidence 36777765555569999999854
No 72
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.62 E-value=1.2e-14 Score=123.18 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=96.0
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEE-----EeeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRL-----ISCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+.+.+.++++||+++.|+++|+|.+ ++.||++|.|+++|.| .+|+|+++|.|++++.+.+++|++++.||.+
T Consensus 11 ~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~ 90 (155)
T cd04745 11 PTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMN 90 (155)
T ss_pred CCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCC
Confidence 3567778899999999999999985 5899999999999999 5699999999999999999999999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+.+..+ +.|+++++|++++.+ ++..+++++.+-.
T Consensus 91 ~~I~~g---------~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G 125 (155)
T cd04745 91 AVVMDG---------AVIGEESIVGAMAFVKAGTVIPPRSLIAG 125 (155)
T ss_pred CEEeCC---------CEECCCCEECCCCEeCCCCEeCCCCEEec
Confidence 999998 999999999999988 5788888888743
No 73
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.61 E-value=3.6e-15 Score=129.49 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=97.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
|.||||||| +|+||++ .||+|++++|+|||+|+++++... ++++|+++++++.+..+.++++. . ..+
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~~----~--~~~ 67 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINSA----Y--KDY 67 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhc----C--cEE
Confidence 689999999 9999964 699999999999999999999986 89999999887777777887652 1 122
Q ss_pred eeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEe
Q 015225 84 LKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 84 v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
.. ....|..+++..+++.+. ..++|++++||+++ ...+..+++.+...+..+..++.+
T Consensus 68 ~~-~~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 68 KN-ASGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred Ee-cCCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 22 455677788888877542 25789999999985 667899999887665555444443
No 74
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.61 E-value=7.9e-15 Score=131.68 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=137.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcceEEe
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~~v 84 (411)
||||||| .|+||+. ..||+|++++|+|||+|+++.+.++.++++|+|+++++. +.+...+.. . ..+.++
T Consensus 2 aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~~ 71 (217)
T TIGR00453 2 AVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKIV 71 (217)
T ss_pred EEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEEe
Confidence 7999999 9999975 579999999999999999999998546999999887553 344433322 1 123444
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT 162 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~ 162 (411)
... .+..++++.+++.+. ..+.++++.||.++ ...+..+++.+.+. ++++++.+. . .+....| ++
T Consensus 72 ~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~--~----~~v~~~~-~~ 138 (217)
T TIGR00453 72 AGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV--A----DTLKRVE-AD 138 (217)
T ss_pred CCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec--c----ceEEEEc-CC
Confidence 322 245688998888771 25789999999985 55688998877653 333444443 2 2334455 56
Q ss_pred CceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcccC-
Q 015225 163 KELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLAG- 241 (411)
Q Consensus 163 ~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~- 241 (411)
+.+..+.++. .-....+ .|.|+...+..+.+.... .+++ + +|....+..
T Consensus 139 g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~~~~------------------------~~~~-~-~d~~~~~~~~ 188 (217)
T TIGR00453 139 GFIVETVDRE---GLWAAQT-PQAFRTELLKKALARAKE------------------------EGFE-I-TDDASAVEKL 188 (217)
T ss_pred CceeecCChH---HeEEEeC-CCcccHHHHHHHHHHHHh------------------------cCCC-C-CcHHHHHHHc
Confidence 7777776642 1233344 688998776554432111 0111 2 333333332
Q ss_pred CCceEEEeecceeeecCCccchhhcch
Q 015225 242 KKQLYTYETMDFWEQIKTPGMSLKCSS 268 (411)
Q Consensus 242 ~~~v~~~~~~~~~~~I~t~~d~~~a~~ 268 (411)
..++..+..+....+|++++|+..+..
T Consensus 189 g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 189 GGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred CCCeEEEecCccccccCCHHHHHHHHH
Confidence 347777777666679999999977754
No 75
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.60 E-value=9e-15 Score=127.27 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=94.6
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
.+.+.+.++++||+++.|+++|+|.+ +++||++|.||++|+|+ +|+|+++|+|++++.|.+|+|++++.||.
T Consensus 18 ~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ 97 (192)
T TIGR02287 18 HPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGM 97 (192)
T ss_pred CCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECC
Confidence 35677888999999999999999984 58999999999999994 69999999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
++.+..+ ++||+++.|++++.| ++..+.+++.+-
T Consensus 98 ga~I~~g---------~~IG~~s~Vgags~V~~~~~ip~~~l~~ 132 (192)
T TIGR02287 98 NAVVMDG---------AVIGENSIVAASAFVKAGAEMPAQYLVV 132 (192)
T ss_pred CcccCCC---------eEECCCCEEcCCCEECCCCEECCCeEEE
Confidence 9999888 999999999999888 566777777664
No 76
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.60 E-value=2.1e-14 Score=126.41 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=85.6
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
..+++.++++||+++.|+++|.|.++++||++|.|+++|.|.++.|+++|.|++++.+.+++|++++.|++++++..+
T Consensus 8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~-- 85 (193)
T cd03353 8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPG-- 85 (193)
T ss_pred CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCc--
Confidence 467778899999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred CCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 369 YNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
++|++++.|+.++.+.++.+++++.+
T Consensus 86 -------~~Ig~~~~Ig~~~~i~~s~ig~~~~i 111 (193)
T cd03353 86 -------TVLGEGVHIGNFVEIKKSTIGEGSKA 111 (193)
T ss_pred -------cEECCCCEECCcEEEecceEcCCCEe
Confidence 66666666666655554444444433
No 77
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.60 E-value=2.7e-14 Score=122.15 Aligned_cols=93 Identities=25% Similarity=0.273 Sum_probs=85.8
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
..++.+.++++||+++.|++++.|.++++||++|.|+++|.|. +++|+++|.|++++.|.+|+|++++.|++++.+.+
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~- 87 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGD- 87 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEec-
Confidence 3567888999999999999999999999999999999999998 69999999999999999999999999999998876
Q ss_pred CcCCcccceeEECCCCEECCCcEE
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++|++++.|++++.+
T Consensus 88 ---------siIg~~~~I~~~~~i 102 (163)
T cd05636 88 ---------SVLGENVNLGAGTIT 102 (163)
T ss_pred ---------CEECCCCEECCCcEE
Confidence 788888888888765
No 78
>PLN02472 uncharacterized protein
Probab=99.59 E-value=2.1e-14 Score=129.31 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=97.3
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----------eeEECCCCEECCCcEEEeeEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----------SCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
.+++.+.++++||+++.|+++++|.++ ++||++|.|+++|.|+ +++||++|+||++|.|.+|+|++
T Consensus 69 ~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd 148 (246)
T PLN02472 69 APNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEP 148 (246)
T ss_pred CCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcC
Confidence 457788889999999999999999975 8999999999999995 59999999999999999999999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+|.||.++.|..+ ++|++++.|++++.| .+..+.+++.+..
T Consensus 149 ~v~IG~~svI~~g---------avIg~~~~Ig~gsvV~~g~~Ip~g~~~~G 190 (246)
T PLN02472 149 ECIIGQHSILMEG---------SLVETHSILEAGSVLPPGRRIPTGELWAG 190 (246)
T ss_pred CCEECCCCEECCC---------CEECCCCEECCCCEECCCCEeCCCCEEEe
Confidence 9999999999998 999999999999988 5788888888763
No 79
>PLN02296 carbonate dehydratase
Probab=99.59 E-value=2.9e-14 Score=130.05 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=96.0
Q ss_pred CCCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----------eeEECCCCEECCCcEEEeeEECC
Q 015225 288 ITSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----------SCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 288 ~~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
.+.+.+.+++.||+++.|+++|+|.+. ++||++|.|+++|+|. +|+||++|+|+++|.|.+++|++
T Consensus 62 ~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd 141 (269)
T PLN02296 62 APSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVED 141 (269)
T ss_pred CCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECC
Confidence 356778888999999999999999975 4999999999999995 68999999999999999999999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+|.||.++.|..+ ++|++++.|+++++| ++..|.+++++-.
T Consensus 142 ~v~IG~ga~I~~g---------v~Ig~~a~IgagSvV~~~~~I~~~~~~~G 183 (269)
T PLN02296 142 EAFVGMGATLLDG---------VVVEKHAMVAAGALVRQNTRIPSGEVWAG 183 (269)
T ss_pred CcEECCCcEECCC---------eEECCCCEECCCCEEecCCEeCCCeEEec
Confidence 9999999999998 999999999999999 5677888887643
No 80
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.59 E-value=7e-15 Score=125.47 Aligned_cols=120 Identities=23% Similarity=0.387 Sum_probs=95.0
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
||||||| +|+||+ .||+|++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++.. .+ +.++.
T Consensus 1 ~vILa~G--~s~Rmg-----~~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~--~~~~~~~~~----~~--~~~v~ 64 (160)
T PF12804_consen 1 AVILAAG--KSSRMG-----GPKALLPIGGKPLIERVLEALREA-GVDDIVVVTGE--EEIYEYLER----YG--IKVVV 64 (160)
T ss_dssp EEEEESS--SCGGGT-----SCGGGSEETTEEHHHHHHHHHHHH-TESEEEEEEST--HHHHHHHTT----TT--SEEEE
T ss_pred CEEECCc--CcccCC-----CCccceeECCccHHHHHHHHhhcc-CCceEEEecCh--HHHHHHHhc----cC--ceEEE
Confidence 7999999 999995 399999999999999999999997 89999999986 334444433 23 45444
Q ss_pred C-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEE
Q 015225 86 E-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVI 143 (411)
Q Consensus 86 ~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~ 143 (411)
. ....|+.++++.++..+. ..++|++++||+++ ...+..+++.+.+.+.+++++..
T Consensus 65 ~~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 65 DPEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp -STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 3 335799999999999872 26999999999975 55689999998777777655444
No 81
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=4.3e-14 Score=120.54 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEEe-----------eEECCCCEECCCcEEEeeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLIS-----------CIVLDDVEIKENAVVLNSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~s~i~~~ 354 (411)
+.+.+.++++||+++.|+++|.|. ++++||++|.|+++|.|.+ +.||++|.+..++++.+++||++
T Consensus 10 ~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~ 89 (164)
T cd04646 10 QESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNN 89 (164)
T ss_pred CCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCC
Confidence 356778889999999999999995 5689999999999999975 46899999999999999999999
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
|.||.++.|.++ +.||++++|+++++| ++..+++++++..+
T Consensus 90 ~~Ig~~a~I~~g---------v~Ig~~~~IgagsvV~~~~~i~~~~vi~g~ 131 (164)
T cd04646 90 NVFESKSFVGKN---------VIITDGCIIGAGCKLPSSEILPENTVIYGA 131 (164)
T ss_pred CEEeCCCEECCC---------CEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence 999999999998 999999999999988 46677777776553
No 82
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.57 E-value=3.4e-14 Score=125.16 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=84.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|.+|||||| .|+||. ..||+|++++|+|||+|+++.+. . ++++|+|+++...+.+ .. .+.
T Consensus 1 ~~~~~~vILA~G--~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~-~~~~i~vv~~~~~~~~----~~----~~~- 63 (193)
T PRK00317 1 MPPITGVILAGG--RSRRMG----GVDKGLQELNGKPLIQHVIERLA-P-QVDEIVINANRNLARY----AA----FGL- 63 (193)
T ss_pred CCCceEEEEcCC--CcccCC----CCCCceeEECCEEHHHHHHHHHh-h-hCCEEEEECCCChHHH----Hh----cCC-
Confidence 889999999999 999994 35999999999999999999998 4 7999999887543322 11 222
Q ss_pred eEEeeC--CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHH
Q 015225 81 VRYLKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 81 i~~v~~--~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~ 132 (411)
.++.. ....|+.++++.+++..+ .+.+++++||.++ ...+..+++.+.
T Consensus 64 -~~v~~~~~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 64 -PVIPDSLADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred -cEEeCCCCCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 23332 223688899998888653 5789999999985 445777777654
No 83
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.8e-15 Score=142.26 Aligned_cols=96 Identities=30% Similarity=0.428 Sum_probs=89.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
++.++.++.||-++.||.++.|. |++||.||.||.+|+|.+|.|+++|+||+||.|.+|+||++++|+++|.+..|
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g--- 402 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPG--- 402 (673)
T ss_pred hccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCC---
Confidence 57788899999999999999998 99999999999999999999999999999999999999999999999999998
Q ss_pred CcccceeEECCCCEECCCcEE-cceEE
Q 015225 370 NAKLGITILGEAVTVEDEVVV-INSIV 395 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-~~~~i 395 (411)
||||.++++|++.++ +++.|
T Consensus 403 ------~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 403 ------SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ------cEEeeeeEeCCCccccccccc
Confidence 999999999988777 45555
No 84
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.56 E-value=5.2e-14 Score=123.40 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=87.3
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
+|||||| .|+||++ ||+|++++|+|||+|+++.+.+. ++++|+|++++..+.+.+.+.. .+ .+.++.
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~---~~--~v~~v~ 68 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLAN---HS--NITLVH 68 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhcc---CC--CeEEEE
Confidence 7999999 9999964 99999999999999999999986 8999999888765443333221 22 344444
Q ss_pred C-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCee
Q 015225 86 E-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMG 138 (411)
Q Consensus 86 ~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~ 138 (411)
. ....|+.++++.+++.. ...+.+++++||+++ ...++.+++.+.+....+
T Consensus 69 ~~~~~~g~~~si~~~l~~~--~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 69 NPQYAEGQSSSIKLGLELP--VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred CcChhcCHHHHHHHHhcCC--CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 3 23458889999888721 125789999999975 456888888776555443
No 85
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.56 E-value=2.7e-13 Score=121.59 Aligned_cols=203 Identities=15% Similarity=0.057 Sum_probs=139.9
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
|||||+| .|+||. .|.+++++|+|||.|+++.+.+...+++|+|.+.. +.+.+.... ++.++.+..
T Consensus 2 aiIpArG--~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~~----~g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARG--GSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAKS----YGASVPFLR 67 (222)
T ss_pred EEEccCC--CCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHHH----cCCEeEEeC
Confidence 7999999 999994 59999999999999999999997557888776643 335554443 455554432
Q ss_pred C----CCCCCChHHHHHHHHHhhc-cCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE
Q 015225 86 E----DKPHGSAGGLYYFRDMIME-ENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA 158 (411)
Q Consensus 86 ~----~~~~g~~~~l~~~~~~i~~-~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~ 158 (411)
. ....++.++++.+++.+.. ...+.++++.+|.++ ..++..+++.+.+.+++..+.+.+. ..+..+.. ..
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~--~~~~~~~~-~~ 144 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSF--AFPIQRAF-KL 144 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeecc--CCChHHhe-EE
Confidence 1 3356788999999988742 224779999999996 5679999999988778888777775 33233332 33
Q ss_pred cCCCCceeEEecc------CCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeec
Q 015225 159 DPNTKELLHYTEK------PETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLD 232 (411)
Q Consensus 159 d~~~~~v~~~~e~------~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (411)
+ +++++..+... .+.+.....+.++|+++++.+..-.
T Consensus 145 ~-~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~------------------------------------ 187 (222)
T TIGR03584 145 K-ENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG------------------------------------ 187 (222)
T ss_pred C-CCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC------------------------------------
Confidence 3 35555544321 1223344568899999998763211
Q ss_pred cchhhcccCCCceEEEeecc-eeeecCCccchhhcch
Q 015225 233 QDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSS 268 (411)
Q Consensus 233 ~d~l~~l~~~~~v~~~~~~~-~~~~I~t~~d~~~a~~ 268 (411)
..+ .+++..|.++. ...||++++|+..|..
T Consensus 188 -~~~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~ 218 (222)
T TIGR03584 188 -PIF-----SPHSIPIVLPRHLVQDIDTLEDWERAEL 218 (222)
T ss_pred -Ccc-----CCCcEEEEeCccceeCCCCHHHHHHHHH
Confidence 111 34556666555 5799999999988854
No 86
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.55 E-value=9.4e-14 Score=122.39 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=89.0
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCc------
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNA------ 371 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~------ 371 (411)
.+++++.|+++|+|. ++.||+++.||++|+|.+++||++|+|+.+|.+.+++||++|.|++++++..+.++..
T Consensus 4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~ 82 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHH 82 (204)
T ss_pred ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccc
Confidence 467788888888886 6899999999999999999999999999999999999999999999999986533110
Q ss_pred ----------------------ccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 372 ----------------------KLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 372 ----------------------~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
..+.++||++++||.++.| .+++|++|++|.+++|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~ 149 (204)
T TIGR03308 83 FTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYT 149 (204)
T ss_pred cccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCc
Confidence 1134777777777777766 5677777888887777643
No 87
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.55 E-value=7.6e-14 Score=121.87 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=83.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+++.+.+++.||+++.|+++|+|+++ ++||++|.||++|+|+ +|+|+++|.||+++.+.+++|+++|.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 45666777888888888888888753 5888888888888886 478899999999988888889999999998
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.+..+ ++||+++.|++|++| ++..+.+++++-
T Consensus 101 a~V~~g---------~~IG~~s~Vgags~V~~~~~ip~~~~~~ 134 (196)
T PRK13627 101 SVIMDG---------AVIGEESIVAAMSFVKAGFQGEKRQLLM 134 (196)
T ss_pred CccCCC---------cEECCCCEEcCCCEEeCCcCcCCCcEEE
Confidence 888887 888888888888887 445556665543
No 88
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.54 E-value=9.7e-14 Score=103.70 Aligned_cols=79 Identities=49% Similarity=0.958 Sum_probs=73.3
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEE
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITIL 378 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i 378 (411)
+++++.|++++.|+++++||++|.||++|+|.+|+|+++|.|++++.+.+|++++++.+++++++..+ +++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~---------~~i 72 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENV---------TVL 72 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecC---------EEE
Confidence 57888888899998899999999999999999999999999999999999999999999999999887 888
Q ss_pred CCCCEECC
Q 015225 379 GEAVTVED 386 (411)
Q Consensus 379 ~~~~~i~~ 386 (411)
+++++|+.
T Consensus 73 g~~~~i~~ 80 (80)
T cd05824 73 GDDVTIKD 80 (80)
T ss_pred CCceEECC
Confidence 98888863
No 89
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.54 E-value=2e-13 Score=115.26 Aligned_cols=104 Identities=23% Similarity=0.227 Sum_probs=92.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-----eEECCCCEECCCcEEEeeEECCCCEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-----CIVLDDVEIKENAVVLNSIIGWKSSLGRW 360 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~s~i~~~~~ig~~ 360 (411)
+.+.+.+++.||+++.|+++|.|.+. ++||++|.|+++|.|.. ++|++++.|+++|.+.+++|++++.|+.+
T Consensus 11 ~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~ 90 (154)
T cd04650 11 PTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMG 90 (154)
T ss_pred CCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCC
Confidence 45667788899999999999999865 69999999999999985 89999999999999999999999999999
Q ss_pred cEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEE
Q 015225 361 ARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVL 401 (411)
Q Consensus 361 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v 401 (411)
+.+..+ ++|++++++++++.+ .+..+++++++
T Consensus 91 ~~i~~~---------~~Ig~~~~vg~~~~v~~g~~i~~~~v~ 123 (154)
T cd04650 91 AILLNG---------AKIGDHVIIGAGAVVTPGKEIPDYSLV 123 (154)
T ss_pred CEEeCC---------CEECCCCEECCCCEECCCcEeCCCCEE
Confidence 999887 999999999999888 45777777775
No 90
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.53 E-value=1.4e-13 Score=125.80 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=15.3
Q ss_pred ceeEECCCCEECCCcEE-cc----eEEcCCCEEcC
Q 015225 374 GITILGEAVTVEDEVVV-IN----SIVLPNKVLNV 403 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v-~~----~~i~~~~~v~~ 403 (411)
|.++|++++.||+++.| .+ ++|+.++.+..
T Consensus 201 g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN 235 (338)
T COG1044 201 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN 235 (338)
T ss_pred ceEEECCceEEcccceeccccccCceecCCcEEcc
Confidence 45555555555555555 12 44444444443
No 91
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.53 E-value=1.5e-13 Score=126.09 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=63.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-------- 348 (411)
.+.+.++++||+++.|+++|+|.+++.||++|.|+++++|. +++||++|.|+++|+|..
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~ 102 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGV 102 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCc
Confidence 34444455555555555555555555556666666555554 455666666666665542
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
++||+++.|++++.|..+.. +...+ +.++||++++|+.++.| .+++|+.++.|..++++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~ 177 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPP 177 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCC
Confidence 44555555544444432100 01111 22777777777777666 46667777777766654
No 92
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.53 E-value=1e-13 Score=127.15 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=76.2
Q ss_pred CcEEcCCcEECCCCEECCCCEECC------------CcEECCCcEECCCcEEE--------eeEECCCCEECCCcEEE-e
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP------------NVSISANVRVGAGVRLI--------SCIVLDDVEIKENAVVL-N 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~------------~~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~-~ 348 (411)
.+.+.+++.||+++.|+++++|++ ++.||++|.|+++|+|. +++||++|+|+++++|. +
T Consensus 40 ~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~ 119 (254)
T TIGR01852 40 HVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHD 119 (254)
T ss_pred CCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccC
Confidence 445555666666666666666652 46677777777777775 35677777777777774 6
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
++|++++.|+.++.+..+ ++||++++|+.++.| .+++|+.++.|..++|+.
T Consensus 120 ~~Ig~~~~i~~~~~i~~~---------~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~ 177 (254)
T TIGR01852 120 CVVGNHVILANNATLAGH---------VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPY 177 (254)
T ss_pred CEECCCCEECCCCEECCC---------cEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCC
Confidence 777777777777777666 788888888877766 467777777777777754
No 93
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.53 E-value=1.8e-13 Score=119.54 Aligned_cols=100 Identities=25% Similarity=0.389 Sum_probs=84.3
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~ 366 (411)
...++++++|+++|.|.++++||++|.|+++|+|.. .+|+++|.|+++|.|. +++|++++.||.++.+.+
T Consensus 10 ~p~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g- 88 (196)
T PRK13627 10 IPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG- 88 (196)
T ss_pred CCccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee-
Confidence 346788888888888888899999999999999975 5899999999999996 478999999999988876
Q ss_pred CcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCC
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSV 405 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~ 405 (411)
++||+++.||.++++ .+|+|++|+.|++++
T Consensus 89 ---------~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 89 ---------CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred ---------EEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 788888888877655 578888888888877
No 94
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.52 E-value=1.1e-13 Score=103.63 Aligned_cols=79 Identities=24% Similarity=0.506 Sum_probs=64.0
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEE
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITIL 378 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i 378 (411)
||++++|++++.|. +++||++|.|+++|+|.+++|+++|.|+++|.|.+|++++++.|++++++.+ |+|
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~----------~ii 70 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD----------CLV 70 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc----------CEE
Confidence 67777788888776 6888888888888888888888888888888888888888888888888876 788
Q ss_pred CCCCEECCCc
Q 015225 379 GEAVTVEDEV 388 (411)
Q Consensus 379 ~~~~~i~~~~ 388 (411)
++++.|++++
T Consensus 71 ~~~~~i~~~~ 80 (81)
T cd04652 71 GSGYRVEAGT 80 (81)
T ss_pred CCCcEeCCCC
Confidence 8888877664
No 95
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.52 E-value=1.2e-13 Score=103.04 Aligned_cols=79 Identities=38% Similarity=0.566 Sum_probs=69.6
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
||++++.|++++.|.+ ++||++|.|++++.|.+++|+++|+|++++.+.+|++++++.|++++++.++ ++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~---------~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNL---------CI 70 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCC---------eE
Confidence 4788888888888885 9999999999999999999999999999999999999999999999888887 88
Q ss_pred ECCCCEECC
Q 015225 378 LGEAVTVED 386 (411)
Q Consensus 378 i~~~~~i~~ 386 (411)
++++++|++
T Consensus 71 ig~~~~i~~ 79 (79)
T cd03356 71 IGDDVVVED 79 (79)
T ss_pred ECCCeEECc
Confidence 888887763
No 96
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.51 E-value=8.6e-14 Score=127.88 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=71.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-------- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-------- 348 (411)
.+.+.++++||+++.|+++++|.++++||++|.|+++++|. .++||++|.|+++|+|.+
T Consensus 26 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~ 105 (262)
T PRK05289 26 FCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGV 105 (262)
T ss_pred CeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCe
Confidence 44445555555555555566666666666666666666664 366666666666666653
Q ss_pred eEECCCCEECCCcEEecCCc--------CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 349 SIIGWKSSLGRWARVQGNGD--------YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~--------~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
++||+++.|+.++.|..+.. +...+ +.++||++|+|+.++.| .+++|++|++|++++|+..
T Consensus 106 t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~ 182 (262)
T PRK05289 106 TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYV 182 (262)
T ss_pred eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCe
Confidence 24555555554444432100 01111 23677777777766655 5788888999999998754
No 97
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.51 E-value=1.5e-13 Score=125.98 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=49.1
Q ss_pred cEECCCcEECCCcEE-EeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc
Q 015225 315 VSISANVRVGAGVRL-ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 315 ~~ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 392 (411)
++||++|.|++++.| ++|+||++|.|+.++.+. +++|+++|.|+.++.|..+ +.||+++.|+.++.|.+
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~---------v~Ig~~~~Ig~~s~V~~ 173 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF---------CRIGRHAMVGGGSGVVQ 173 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC---------cEECCCCEECcCCEEee
Confidence 455555555555555 345555555555555555 5666666666666666666 88888899988888855
Q ss_pred eEEcCCCEE
Q 015225 393 SIVLPNKVL 401 (411)
Q Consensus 393 ~~i~~~~~v 401 (411)
.+ .+++++
T Consensus 174 ~i-~~~~~~ 181 (254)
T cd03351 174 DV-PPYVIA 181 (254)
T ss_pred ec-CCCeEE
Confidence 43 445554
No 98
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.51 E-value=2.1e-13 Score=115.48 Aligned_cols=95 Identities=26% Similarity=0.398 Sum_probs=78.9
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEE-----EeeEECCCCEECCCcEEecCCcC
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVV-----LNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i-----~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
|++++.|+++++|.+++.||++|.|+++|+|.. +.||++|.|+++|+| .+++|++++.|+.++.+.+
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~---- 78 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG---- 78 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC----
Confidence 577788888888888999999999999999984 899999999999999 4689999999999988776
Q ss_pred CcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 370 NAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
++||++++|+.++.| .+|+|++++.|..
T Consensus 79 ------~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 79 ------CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred ------CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 677777777776655 4677777777766
No 99
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.51 E-value=2.2e-13 Score=118.64 Aligned_cols=106 Identities=24% Similarity=0.437 Sum_probs=83.0
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+... +++|+|+++...+. + . ..+ +.+
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~---~-~----~~~--~~~ 61 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER---Y-A----LLG--VPV 61 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH---H-h----hcC--CcE
Confidence 468999999 9999964 99999999999999999999984 88999998866533 1 1 122 334
Q ss_pred eeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHH
Q 015225 84 LKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAH 131 (411)
Q Consensus 84 v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~ 131 (411)
+.. ....|..++++.+++.+. .+.+++++||+++ ...+..+++.+
T Consensus 62 v~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 62 IPDEPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred eeCCCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 432 345689999999998775 5889999999985 44577777765
No 100
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.51 E-value=2.4e-13 Score=124.25 Aligned_cols=109 Identities=23% Similarity=0.342 Sum_probs=63.5
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEE------CCCcEEE-eeEECCCCEECCCcEE------------------
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRV------GAGVRLI-SCIVLDDVEIKENAVV------------------ 346 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i------~~~~~i~-~~~i~~~~~i~~~~~i------------------ 346 (411)
.++++++|+++++|+++++|.++++||++|+| .+++.|. ++.||++|.|+.+++|
T Consensus 119 ~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~ 198 (338)
T COG1044 119 SIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIP 198 (338)
T ss_pred ccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcc
Confidence 33444444444444444444444444444444 4444444 3666666666666655
Q ss_pred --EeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCC
Q 015225 347 --LNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSV 405 (411)
Q Consensus 347 --~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~ 405 (411)
.+.+|+++|.||.++.|..+ .++.++|+++++|...++| ++|.||.++.|...+
T Consensus 199 q~g~V~Igd~VeIGanT~Idrg-----a~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~v 255 (338)
T COG1044 199 QIGRVIIGDDVEIGANTTIDRG-----ALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQV 255 (338)
T ss_pred eeceEEECCceEEcccceeccc-----cccCceecCCcEEcceeEEccccEECCCcEEeccc
Confidence 23566666666666666553 4455788888888888888 688888888776643
No 101
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.51 E-value=4.2e-13 Score=111.44 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=82.5
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------eeEECCCCEECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL---------NSIIGWKSSLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~s~i~~~~~ig~ 359 (411)
.+++.++++|++++.|.+++.|..++.||+++.|+.++.|. +++|+++|.|+.++.+. .++|++++.|++
T Consensus 7 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~ 86 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGA 86 (139)
T ss_pred CcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECC
Confidence 45666667777777777777777777777777777777775 67888888888888885 368888888888
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEE---cCCCEEcCCCCCc
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIV---LPNKVLNVSVQEE 408 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i---~~~~~v~~~~~~~ 408 (411)
++.+..+ +.|++++.|++++.| ++..| ++|++|.+++|+.
T Consensus 87 ~a~I~~g---------v~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~ 130 (139)
T cd03350 87 NCEVVEG---------VIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPG 130 (139)
T ss_pred CCEECCC---------CEECCCCEEcCCCEEcCCeEecccCcccEEecccCCC
Confidence 8888777 888888888888777 22222 6788888888876
No 102
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.50 E-value=4.6e-13 Score=114.81 Aligned_cols=105 Identities=27% Similarity=0.349 Sum_probs=89.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC----CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe-eEECCCCEEC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP----NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN-SIIGWKSSLG 358 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-s~i~~~~~ig 358 (411)
+++.+.+++.+|+++.|+++++|.. ++.||++|.|++++.|. ++.||++|.|+.++.|.+ ++|+++|.||
T Consensus 13 ~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig 92 (167)
T cd00710 13 PTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIG 92 (167)
T ss_pred CCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEEC
Confidence 4667777888888888988888875 47899999999999995 688999999999999994 9999999999
Q ss_pred CCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcC
Q 015225 359 RWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNV 403 (411)
Q Consensus 359 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~ 403 (411)
.++.|.+ +.||+++.|+.++.|.++.+++++.++.
T Consensus 93 ~~~~I~~----------~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 93 FRSVVFN----------AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred CCCEEEC----------CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 9999986 8999999999999887666666666643
No 103
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.50 E-value=3.3e-13 Score=115.09 Aligned_cols=100 Identities=23% Similarity=0.291 Sum_probs=78.1
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEee-----------EECCCCEECCCcEE
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLNS-----------IIGWKSSLGRWARV 363 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~s-----------~i~~~~~ig~~~~i 363 (411)
|++++.|.+++.|.+++.||++|.|+++|.|. .++||++|.|+++|+|.++ +||+++.+..++.+
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 67888888888888899999999999999995 4699999999999999854 46777777666666
Q ss_pred ecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCC--CCCc
Q 015225 364 QGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVS--VQEE 408 (411)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~--~~~~ 408 (411)
.+ ++||++|+|+.++.| .+|+|+++++|.++ +|+.
T Consensus 82 ~~----------~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~ 125 (164)
T cd04646 82 EA----------LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPEN 125 (164)
T ss_pred Ee----------eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCC
Confidence 55 677777766666655 46777778777776 5554
No 104
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.50 E-value=6.4e-13 Score=120.33 Aligned_cols=218 Identities=13% Similarity=0.138 Sum_probs=134.5
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i 81 (411)
++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+...+.+++|+|+++... ..+.+++..+. .....+
T Consensus 2 ~~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~-~~~~~~ 75 (230)
T PRK13385 2 NYELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLN-VADQRV 75 (230)
T ss_pred ceEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcC-cCCCce
Confidence 4789999999 9999964 579999999999999999999987646899999887543 33333443311 001134
Q ss_pred EEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEc
Q 015225 82 RYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIAD 159 (411)
Q Consensus 82 ~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d 159 (411)
+++. ...+..++++.+++.+. ..+.++++.||.++ ...+..+++.+.+.++. +...+. .+ .....+
T Consensus 76 ~~v~--~g~~r~~sv~~gl~~~~--~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~--~d----ti~~~~ 143 (230)
T PRK13385 76 EVVK--GGTERQESVAAGLDRIG--NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEV--KD----TVKRVK 143 (230)
T ss_pred EEcC--CCchHHHHHHHHHHhcc--CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEec--cc----eEEEEc
Confidence 4443 22345689999988774 13567888999996 45588998887665433 333333 21 111222
Q ss_pred CCCCceeEEeccCCCcccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 160 PNTKELLHYTEKPETFVSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 160 ~~~~~v~~~~e~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
++.+....++ + .-+.--+.|.|+.+.+....+.... +.+.+ +|....+
T Consensus 144 --~~~~~~~i~r--~--~~~~~qtpq~f~~~~l~~~~~~~~~-------------------------~~~~~-td~~~~~ 191 (230)
T PRK13385 144 --DKQVIETVDR--N--ELWQGQTPQAFELKILQKAHRLASE-------------------------QQFLG-TDEASLV 191 (230)
T ss_pred --CCeeEeccCH--H--HHhhhcCCceeeHHHHHHHHHHHHh-------------------------cCCCc-CcHHHHH
Confidence 3444443321 1 1122235788887655433332100 01112 3433333
Q ss_pred c-CCCceEEEeecceeeecCCccchhhcchHH
Q 015225 240 A-GKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 240 ~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
. ...++..+..+.....|++|+|+..+...+
T Consensus 192 ~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l 223 (230)
T PRK13385 192 ERSPHPVKLVQGSYYNIKLTTPEDMPLAKAIL 223 (230)
T ss_pred HHcCCCEEEEECCcccCcCCCHHHHHHHHHHH
Confidence 3 345788887777788999999999887554
No 105
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=1.1e-12 Score=112.53 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=162.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++..+||+|.= .+|||.. |||-.|+|+|||.|+.++..++ +.++++|.+. .+.+.+.+.+ +|.+
T Consensus 1 ~~~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s-~~~rvvVATD--de~I~~av~~----~G~~ 65 (247)
T COG1212 1 TMKFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKS-GADRVVVATD--DERIAEAVQA----FGGE 65 (247)
T ss_pred CCceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHc-CCCeEEEEcC--CHHHHHHHHH----hCCE
Confidence 577899999998 8999976 9999999999999999999996 9999999885 3457777765 4666
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCc-cc--ccceeE
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSA-ES--AHQFGE 155 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~g~ 155 (411)
+.....+...||... ..+.+.+...+++.++=+.||.++ ...+..+++...++.+++..+..+... ++ .+..-.
T Consensus 66 avmT~~~h~SGTdR~-~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VK 144 (247)
T COG1212 66 AVMTSKDHQSGTDRL-AEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVK 144 (247)
T ss_pred EEecCCCCCCccHHH-HHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEE
Confidence 666666666676554 444555543345667778999997 456888888887777776555555421 11 122334
Q ss_pred EEEcCCCCceeEEeccCCCc-------ccCcccceEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCce
Q 015225 156 LIADPNTKELLHYTEKPETF-------VSDLINCGVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDF 228 (411)
Q Consensus 156 v~~d~~~~~v~~~~e~~~~~-------~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (411)
++.| ..++.+.|+..|-.. ...+.-.|+|.|+++++..+-.+.+...++.
T Consensus 145 vV~d-~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~---------------------- 201 (247)
T COG1212 145 VVLD-KEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKI---------------------- 201 (247)
T ss_pred EEEc-CCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHH----------------------
Confidence 6688 778999998875211 2456678999999999988776654322110
Q ss_pred eeeccchhhcccCCCceEEEeeccee-eecCCccchhhcchHHH
Q 015225 229 VRLDQDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSSLYL 271 (411)
Q Consensus 229 ~~l~~d~l~~l~~~~~v~~~~~~~~~-~~I~t~~d~~~a~~~~l 271 (411)
.+| +-|+.|-.+.++.+...+... .-+||++|+.++.+.+.
T Consensus 202 E~L--EQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~ 243 (247)
T COG1212 202 ESL--EQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILS 243 (247)
T ss_pred HHH--HHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHH
Confidence 111 234555566788888877644 88999999998876554
No 106
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.50 E-value=3.3e-13 Score=122.97 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=27.3
Q ss_pred ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 374 GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+.+.||++++|+.++.| .+++|++++.|++++|+-.
T Consensus 136 g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~ 178 (255)
T PRK12461 136 GHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYC 178 (255)
T ss_pred CceEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCe
Confidence 34777788877777766 5678888888999988754
No 107
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.50 E-value=4.2e-13 Score=123.10 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=63.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEE--------e
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVL--------N 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~--------~ 348 (411)
.+.+.+++.||++++|+++|.|.+++.||++|+|+++++|. +++||++|.|+++|+|. .
T Consensus 22 ~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~ 101 (254)
T TIGR01852 22 FCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGV 101 (254)
T ss_pred CCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCc
Confidence 44455555555666666666666666677777777777775 46777777777777775 3
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEE
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVL 401 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v 401 (411)
++||+++.|+.++.+..+ |.||+++.|++++.+ .+++|++++.+
T Consensus 102 ~~IG~~~~I~~~~~I~~~---------~~Ig~~~~i~~~~~i~~~~~Igd~~~I 146 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHD---------CVVGNHVILANNATLAGHVEVGDYAII 146 (254)
T ss_pred EEECCCCEECCCCEEccC---------CEECCCCEECCCCEECCCcEECCCcEE
Confidence 466666666666666544 666666666666655 34444444443
No 108
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.50 E-value=5e-13 Score=113.84 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=89.8
Q ss_pred CcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-------------eEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 296 DVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-------------CIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
++++|+++.|+++|+|.++ +.||++|.|+++|+|.. ++|++++.|++++.+.+++|++++.||+
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 6788999999999999865 69999999999999974 5799999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
++.++.+ ++|++++.|+++++| .++.++|++++..
T Consensus 101 ~~~Ig~~---------~~I~~~~~i~~g~~V~~~~~i~~~~vv~g 136 (161)
T cd03359 101 NCVIGRR---------CIIKDCVKILDGTVVPPDTVIPPYSVVSG 136 (161)
T ss_pred CCEEcCC---------CEECCCcEECCCCEECCCCEeCCCCEEec
Confidence 9999998 999999999999988 6888998888864
No 109
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.49 E-value=2.2e-13 Score=118.52 Aligned_cols=99 Identities=27% Similarity=0.395 Sum_probs=82.8
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEE-----EeeEECCCCEECCCcEEecC
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVV-----LNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~s~i~~~~~ig~~~~i~~~ 366 (411)
...|+++++|++++.|.++++||++|.|+++|+|. ..+||++|.|+++|+| .+|+|++++.|++++.|.+
T Consensus 8 ~p~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~- 86 (192)
T TIGR02287 8 TPVVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG- 86 (192)
T ss_pred CCcCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC-
Confidence 34678899999999998899999999999999997 4799999999999999 3689999999999998877
Q ss_pred CcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCC
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVS 404 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~ 404 (411)
|+|++++.||.++.+ .+|+|++|+.|..+
T Consensus 87 ---------siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 87 ---------CIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ---------CEECCCCEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 788888777776655 46777777777763
No 110
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.49 E-value=2e-13 Score=119.31 Aligned_cols=119 Identities=21% Similarity=0.336 Sum_probs=90.2
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+... ++++|+|++++......+++.. ++ +.+
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~----~~--~~~ 66 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAG----LP--VVV 66 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcC----CC--eEE
Confidence 468999999 9999976 99999999999999999999997 8999999987665444443322 23 333
Q ss_pred ee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 84 LK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 84 v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+. +....|+.++++.+++.+.. ..+++++++||+++ ...+..+++.+.+....
T Consensus 67 ~~~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 67 VINPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred EeCCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33 33446899999999988742 35789999999975 55678888776544443
No 111
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.49 E-value=3e-13 Score=122.77 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECC-----CcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEe---------eEECC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGP-----NVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLN---------SIIGW 353 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------s~i~~ 353 (411)
.++++.+++++++++.|+++++|.+ +++||++|+|+.++.|.+ +.||++|.|+.++.|.+ ++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 4677888888888888888888873 344555555555555543 46677777777766653 78999
Q ss_pred CCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcC---CCEEcCCCCCc
Q 015225 354 KSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLP---NKVLNVSVQEE 408 (411)
Q Consensus 354 ~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~---~~~v~~~~~~~ 408 (411)
+|.||.++.|..+ ++||++++|++++.| +++.|++ |+++.+.+|+.
T Consensus 182 nv~IGa~s~I~~G---------v~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~ 231 (272)
T PRK11830 182 NCFIGARSEVVEG---------VIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAG 231 (272)
T ss_pred CCEECCCCEEcCC---------CEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCC
Confidence 9999999999877 999999999999988 6788884 56666666654
No 112
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.49 E-value=7.6e-13 Score=111.87 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=92.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCC---cEECCCcEECCCcEEEe-----eEECCCCEECCCcEEEeeEECCCCEECCCc
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPN---VSISANVRVGAGVRLIS-----CIVLDDVEIKENAVVLNSIIGWKSSLGRWA 361 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~ 361 (411)
.+.+.+++++|+++.|++++.|.++ ++||+++.|+++|+|.. ++|+++|.|+.+|.+.+++|++++.|+.++
T Consensus 11 ~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 90 (153)
T cd04645 11 NATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGA 90 (153)
T ss_pred CCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCC
Confidence 5677778899999999999998854 69999999999999997 599999999999999999999999999999
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
.+..+ ++|+++++|++++.+ ++..+++++.+.
T Consensus 91 ~v~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~~~ 123 (153)
T cd04645 91 IILDG---------AVIGKGSIVAAGSLVPPGKVIPPGSLVA 123 (153)
T ss_pred EEcCC---------CEECCCCEECCCCEECCCCEeCCCCEEe
Confidence 99977 999999999999888 466777776664
No 113
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.49 E-value=3.4e-13 Score=100.99 Aligned_cols=80 Identities=11% Similarity=0.225 Sum_probs=75.3
Q ss_pred EECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEE
Q 015225 316 SISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIV 395 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i 395 (411)
+||++++|++++.|.++.|+++|.|+++|.|.+++|++++.|+.++++.+ +++++++.|++++.+.+|++
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~----------svi~~~~~i~~~~~v~~~ii 70 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN----------CIIGNGAVIGEKCKLKDCLV 70 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec----------cEEeCCCEECCCCEEccCEE
Confidence 37889999999999999999999999999999999999999999999987 99999999999999999999
Q ss_pred cCCCEEcCCC
Q 015225 396 LPNKVLNVSV 405 (411)
Q Consensus 396 ~~~~~v~~~~ 405 (411)
++++.|..+.
T Consensus 71 ~~~~~i~~~~ 80 (81)
T cd04652 71 GSGYRVEAGT 80 (81)
T ss_pred CCCcEeCCCC
Confidence 9999998763
No 114
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.48 E-value=5.5e-13 Score=125.91 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=43.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
.+.+.+.+.|++++.|+++++|++++.||++|+|+++|.|. +++||++|.|+.+++|. +++||++|.|++++.|+
T Consensus 97 ~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 97 TAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred CCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 44555555555555555555555555555555555555553 55566666666666665 56666666666666664
No 115
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.48 E-value=1.6e-12 Score=124.52 Aligned_cols=107 Identities=25% Similarity=0.347 Sum_probs=57.5
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE--------------------eeE
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL--------------------NSI 350 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~s~ 350 (411)
.+.+++.||+++.|+++|+|++++.||++|.|+++|+|. ++.|+++|+|+++|+|. +++
T Consensus 126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 333334444444444444444444455555555555554 24466666666666663 356
Q ss_pred ECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 351 IGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 351 i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
|++++.||+++.|..+ ..+.++||++++|+..+.| ++|.||+++.+..
T Consensus 206 Ig~~v~IGa~~~I~~~-----~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~ 254 (343)
T PRK00892 206 IGDDVEIGANTTIDRG-----ALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAA 254 (343)
T ss_pred ECCCcEECCCcEEecC-----ccccceeCCCCEEeCCeEEccCCEECCCcEEee
Confidence 6666666666666432 1223666666666666666 4566666555543
No 116
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.48 E-value=7.3e-13 Score=125.07 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=77.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------------------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL--------------------- 347 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------- 347 (411)
.+.+.++++||+++.|+++++|+++++||++|.|+++|+|. +++||++|.|+++|+|.
T Consensus 115 ~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G 194 (324)
T TIGR01853 115 NVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIG 194 (324)
T ss_pred CcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccc
Confidence 34444455555555555666666667777777777777776 78899999999988884
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
+++|+++|.||+++.|..+ +.+.++||++++|+..+.| .+|.||+++.+...
T Consensus 195 ~vvIgd~v~IGa~~~I~r~-----~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~ 247 (324)
T TIGR01853 195 RVIIEDDVEIGANTTIDRG-----AFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQ 247 (324)
T ss_pred eEEECCCcEECCCCEEecC-----CcCcceecCCcEEccCcEECCCCEECCCcEECCc
Confidence 4788889999998888543 2333777777777777777 56777777666543
No 117
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.47 E-value=8.4e-13 Score=121.33 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------eeEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------NSIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~s~i~~~ 354 (411)
+.+.+.+.+.|++++.|+++|.|++++.||++|.|+++++|. +++||++|.|++++.|. .++||++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~ 86 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN 86 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence 356777788888888888888888888888888888888887 69999999999999997 4889999
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNV 403 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~ 403 (411)
+.|++++.|..+... .-+.+.||+++.|+.++.| .+|+|+.+.++..
T Consensus 87 ~~I~e~~~I~~~~~~--~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~ 134 (262)
T PRK05289 87 NTIREFVTINRGTVQ--GGGVTRIGDNNLLMAYVHVAHDCVVGNHVILAN 134 (262)
T ss_pred CEECCCeEEeccccc--CCCeeEECCceEECCCCEECCeEEECCCeEECC
Confidence 999999999764210 0112466666666666666 3555555555543
No 118
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.47 E-value=1.2e-12 Score=115.30 Aligned_cols=120 Identities=12% Similarity=0.230 Sum_probs=73.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec---
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG--- 365 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~--- 365 (411)
.+.+.+++.||+++.|+++|.|. ++.||++|.|++++.|.+++|++++.|+.++.|. +++|++++.|+.++.+.+
T Consensus 27 ~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 27 GVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 44555566666666666666665 3467777777777777777777766666666665 555555555544433211
Q ss_pred --CCc-------------CCcc--------------cceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 366 --NGD-------------YNAK--------------LGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 366 --~~~-------------~~~~--------------~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
+.. ++++ ...++||++++|+.++.+ .+++|++|++|.+++|+..
T Consensus 106 g~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~ 185 (193)
T cd03353 106 GEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGA 185 (193)
T ss_pred cCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCC
Confidence 000 0000 012567777777776544 6899999999999998764
Q ss_pred c
Q 015225 410 I 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 186 ~ 186 (193)
T cd03353 186 L 186 (193)
T ss_pred E
Confidence 3
No 119
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.47 E-value=1.2e-12 Score=114.53 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=84.1
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||+ ..||+|++++|+|||+|+++.+.. .+++|+|++....+. +... .++ +.+
T Consensus 1 ~~~iILAgG--~s~Rmg----~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~---~~~~---~~~--~~~ 64 (186)
T TIGR02665 1 ISGVILAGG--RARRMG----GRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPER---YAQA---GFG--LPV 64 (186)
T ss_pred CeEEEEcCC--ccccCC----CCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHH---Hhhc---cCC--CcE
Confidence 468999999 999996 259999999999999999999975 588999888654322 2111 122 233
Q ss_pred eeC--CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 84 LKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 84 v~~--~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.. ....|+.++++.+++.+. .+.+++++||.++ ...+..+++.+.+.++.
T Consensus 65 i~~~~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 65 VPDALADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred EecCCCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 332 345799999999998774 5789999999975 44477777765443333
No 120
>PLN02296 carbonate dehydratase
Probab=99.46 E-value=7.9e-13 Score=120.67 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=81.3
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----------eeEECCCCEECCCcE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----------NSIIGWKSSLGRWAR 362 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----------~s~i~~~~~ig~~~~ 362 (411)
.|++++.|.+++.|.+++.||++|.|+.+|+|.. ++||++|.|+++|+|. +++||++|.||.+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 5777888888888888899999999999999874 5899999999999995 579999999999988
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCC--CCCc
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVS--VQEE 408 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~--~~~~ 408 (411)
+.+ |+|+++|.||.+++| .+|+|++|++|+.+ +|+.
T Consensus 134 I~g----------~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~ 178 (269)
T PLN02296 134 LHG----------CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG 178 (269)
T ss_pred ecC----------CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence 755 666666666666554 57888888888887 4443
No 121
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.46 E-value=4.4e-13 Score=120.31 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=86.3
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccce
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+++.++.|++++.|.++++||++|.|++++.|. +++||++|.|+.+++|. +++||++|.||.++.+.+.-.++. ...
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~-~~~ 160 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPS-AKP 160 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcccccccc-CCC
Confidence 578888999999999899999999999999997 69999999999999997 899999999999999975211111 111
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
++||++++||.++++ .+++|+++++|.+++|+.
T Consensus 161 v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~ 200 (231)
T TIGR03532 161 VVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPN 200 (231)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCC
Confidence 566666666666555 577788888888777654
No 122
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.46 E-value=6.2e-13 Score=99.11 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=63.6
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
+||++++|++++.|. +++|+++|.|+++|+|.+++|++++.|++++.|.+++|++++.|++++++..+ ++
T Consensus 1 ~ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~---------~~ 70 (79)
T cd05787 1 VIGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPG---------SL 70 (79)
T ss_pred CccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCC---------CE
Confidence 367788888888886 68888888888888888888888888888888888888888888888777766 77
Q ss_pred ECCCCEEC
Q 015225 378 LGEAVTVE 385 (411)
Q Consensus 378 i~~~~~i~ 385 (411)
++++++|+
T Consensus 71 v~~~~~ig 78 (79)
T cd05787 71 ISFGVVIG 78 (79)
T ss_pred EeCCcEeC
Confidence 77776665
No 123
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.45 E-value=1.3e-12 Score=118.99 Aligned_cols=128 Identities=20% Similarity=0.335 Sum_probs=90.4
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
+.+.+|||||| .|+||+. ..||+|++++|+|+|+|+++.+...+++++|+|+++.+. +.+++.+.. ++.+
T Consensus 23 ~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~----~~~~ 93 (252)
T PLN02728 23 KSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN----IDVP 93 (252)
T ss_pred CceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh----cCCc
Confidence 45789999999 9999964 679999999999999999999998557999999987653 333333332 3444
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCC--ccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD--VCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D--~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
+.++. ...+..++++.+++.+. .+..+|+.+| .++ ...+..+++...+.+ +.+...+.
T Consensus 94 i~~v~--gg~~r~~SV~~gl~~l~---~~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 94 LKFAL--PGKERQDSVFNGLQEVD---ANSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred eEEcC--CCCchHHHHHHHHHhcc---CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 55442 34556889999998874 2334455555 564 445788888776554 34555554
No 124
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.45 E-value=1.5e-12 Score=109.84 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=79.4
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEEe-----eEECCCCEECCCcEEecCCcC
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVLN-----SIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~~ 369 (411)
+++++.|++++.|.+++.||++|.|+++|.|.. .+||++|.|+++|.|.+ ++|++++.|+.++++.+
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 78 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG---- 78 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC----
Confidence 677888888888888899999999999999986 49999999999999985 89999999999999976
Q ss_pred CcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 370 NAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
++||++++|+.++.+ .+++|++++.+.
T Consensus 79 ------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg 106 (154)
T cd04650 79 ------AKVGNYVIVGMGAILLNGAKIGDHVIIG 106 (154)
T ss_pred ------cEECCCCEEcCCCEEeCCCEECCCCEEC
Confidence 889998888888877 445555555444
No 125
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.44 E-value=1.9e-12 Score=107.46 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=43.1
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEEC
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIG 352 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~ 352 (411)
.++.+.+++++++.|++++.|.++++++.++.||+++.|. ++.|++++.||++|.|. ++.|+
T Consensus 2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred cccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 3566777777777777777777777777777777777776 36666666666666665 55555
No 126
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.44 E-value=1.7e-12 Score=114.82 Aligned_cols=110 Identities=22% Similarity=0.386 Sum_probs=83.2
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| .|+||.. +|+|++++|+|||+|+++.+.. .+++|+|++++. +....... ..+.
T Consensus 7 ~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~-~~~~~~~~-------~~~~ 69 (200)
T PRK02726 7 NLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAA--CADEVYIITPWP-ERYQSLLP-------PGCH 69 (200)
T ss_pred CceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCH-HHHHhhcc-------CCCe
Confidence 5789999999 9999953 8999999999999999999986 378898887643 22222211 1345
Q ss_pred EeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHH
Q 015225 83 YLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 83 ~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~ 132 (411)
++.. ....|..++++.+++.+. .++++|++||+++ ...+..+++.+.
T Consensus 70 ~i~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred EecCCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 5543 334688999999999875 4789999999986 445777777654
No 127
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.44 E-value=1.1e-12 Score=117.89 Aligned_cols=92 Identities=11% Similarity=0.121 Sum_probs=60.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECC-----CcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE---------eeEECCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP-----NVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL---------NSIIGWK 354 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~s~i~~~ 354 (411)
+.++.+++.+++++.|+++++|.+ ++.||++|.|+.++.|+ ++.||++|.|+.++.|. .++|+++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDn 179 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 179 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCC
Confidence 455666666666666666666653 34555555555555554 35666666666666552 3688888
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.||++|.|.++ ++||+++.|++|++|
T Consensus 180 v~IGa~a~I~~G---------V~IG~gavIGaGavI 206 (269)
T TIGR00965 180 CFIGARSEIVEG---------VIVEEGSVISMGVFI 206 (269)
T ss_pred CEECCCCEEcCC---------CEECCCCEEeCCCEE
Confidence 888888888877 777888777777777
No 128
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.44 E-value=1.7e-12 Score=116.60 Aligned_cols=29 Identities=14% Similarity=-0.028 Sum_probs=12.5
Q ss_pred CEECCCcEEE-eeEECCCCEECCCcEEecC
Q 015225 338 VEIKENAVVL-NSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 338 ~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~ 366 (411)
|+||++|.|+ +++|.+++.||+++.|+.+
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaG 203 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMG 203 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCC
Confidence 3344444433 3334444444444444444
No 129
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.44 E-value=2.5e-12 Score=109.75 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=92.0
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVP 80 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~ 80 (411)
..+-+|||||| +|+||. .+|.|+|+.|+|++.++++...++ +.+++++|+++.. +....... +..
T Consensus 4 ~~v~~VvLAAG--rssRmG-----~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~------~~~ 69 (199)
T COG2068 4 STVAAVVLAAG--RSSRMG-----QPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLA------QLG 69 (199)
T ss_pred cceEEEEEccc--ccccCC-----CcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhc------cCC
Confidence 45789999999 999996 599999999999999999999996 9999999988762 22222211 234
Q ss_pred eEEeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhc
Q 015225 81 VRYLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRY 134 (411)
Q Consensus 81 i~~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~ 134 (411)
++++.. +...|.+.|+..+.+....+. +.++++.||++. ..++..+++.+...
T Consensus 70 ~~~v~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 70 VTVVVNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred eEEEeCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 555543 445699999999999886332 589999999985 66788888887655
No 130
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.44 E-value=8.2e-13 Score=131.92 Aligned_cols=121 Identities=18% Similarity=0.265 Sum_probs=78.7
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec--
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG-- 365 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~-- 365 (411)
.++.+.+++.||+++.|+++|.|. +++||++|.|+++|.|.+++|+++|.||+++.|. +++|+++|.||+++.+.+
T Consensus 272 ~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ 350 (451)
T TIGR01173 272 PNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNAR 350 (451)
T ss_pred CCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcE
Confidence 355566667777777777777776 6777777777777777777777777777766666 466666655555443221
Q ss_pred ---CCc-------------CCccc--------------ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 366 ---NGD-------------YNAKL--------------GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 366 ---~~~-------------~~~~~--------------~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
+.. .++.+ ..++||++++||.++.| .+++|++|++|.+++|+.
T Consensus 351 ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~ 430 (451)
T TIGR01173 351 IGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEG 430 (451)
T ss_pred ECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCC
Confidence 000 01111 02667777777777654 689999999999999886
Q ss_pred cc
Q 015225 409 II 410 (411)
Q Consensus 409 ~~ 410 (411)
.+
T Consensus 431 ~~ 432 (451)
T TIGR01173 431 AL 432 (451)
T ss_pred cE
Confidence 43
No 131
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.43 E-value=1.4e-12 Score=124.85 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=40.4
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE--------------------eeEECCCCEECCCcEEE--
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI--------------------SCIVLDDVEIKENAVVL-- 347 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~~i~-- 347 (411)
++.+.+++.||+++.|+++++|.+++.||++|+|+++|+|. +++|++++.||++++|.
T Consensus 142 ~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~ 221 (343)
T PRK00892 142 GAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRG 221 (343)
T ss_pred CCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecC
Confidence 34444445555555555555555555566666666666663 35666666666666663
Q ss_pred ---eeEECCCCEECCCcEEe
Q 015225 348 ---NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 348 ---~s~i~~~~~ig~~~~i~ 364 (411)
+++|++++.|+..+.|.
T Consensus 222 ~~~~t~Ig~~~~i~~~v~I~ 241 (343)
T PRK00892 222 ALDDTVIGEGVKIDNLVQIA 241 (343)
T ss_pred ccccceeCCCCEEeCCeEEc
Confidence 34444444444444443
No 132
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.43 E-value=1.9e-12 Score=104.63 Aligned_cols=92 Identities=24% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEE----------------EeeEECCCCEECCCcE
Q 015225 300 HPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVV----------------LNSIIGWKSSLGRWAR 362 (411)
Q Consensus 300 ~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i----------------~~s~i~~~~~ig~~~~ 362 (411)
++++.|++++.|+++++||++|.|++++.|. +++|+++|.|++++.+ .+++|++++.||+++.
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 81 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT 81 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence 4444555555555555555555555555553 4555555555555554 4556666666666666
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+..+ ++|++++.|++++.+..+ +.+++.+
T Consensus 82 v~~~---------~~ig~~~~i~~~~~v~~~-i~~~~~~ 110 (119)
T cd03358 82 ILPG---------VTIGEYALVGAGAVVTKD-VPPYALV 110 (119)
T ss_pred EeCC---------cEECCCCEEccCCEEeCc-CCCCeEE
Confidence 6555 666666666666555433 4444443
No 133
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.43 E-value=3e-12 Score=109.75 Aligned_cols=95 Identities=35% Similarity=0.427 Sum_probs=73.0
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecCC
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~~ 367 (411)
.||+++.|+++|.|.+++.||++|.|+++|.|. +++||++|.|++++.|. .+.||+++.|+.++.+.++
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~- 82 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGP- 82 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCC-
Confidence 577777777777777777888888888888776 37889999999998884 5778888888888888877
Q ss_pred cCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
++||++++|+.++.|.++.|++++.+
T Consensus 83 --------~~Ig~~~~Ig~~~~I~~~~Ig~~~~I 108 (167)
T cd00710 83 --------AYIGDNCFIGFRSVVFNAKVGDNCVI 108 (167)
T ss_pred --------EEECCCCEECCCCEEECCEECCCCEE
Confidence 88888888888887744444444433
No 134
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.43 E-value=3.2e-12 Score=113.16 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=67.7
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
.+.+.+++.||+++.|+++++|++++.||++|.|+++|.|. ++.|+++|.|+.++.+. ++.+++++.||+++.+..+
T Consensus 93 ~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 171 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG- 171 (201)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-
Confidence 44556666677777777777777667777777777777775 46777777777777766 5677777777777666665
Q ss_pred cCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.|+++++|++++++.++ +.+++++
T Consensus 172 --------~~i~~~~~i~~~~~v~~~-~~~~~~~ 196 (201)
T TIGR03570 172 --------VTIGAGAIVGAGAVVTKD-IPDGGVV 196 (201)
T ss_pred --------CEECCCCEECCCCEECCc-CCCCCEE
Confidence 666666666666666443 4444443
No 135
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.2e-13 Score=122.74 Aligned_cols=94 Identities=21% Similarity=0.395 Sum_probs=85.4
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCccc
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKL 373 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~ 373 (411)
+..+.++++++|++.+.|. .++||.||.||++++|.+|+|++|++||+||.|.+||||.++.||++|.+.+
T Consensus 332 g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n-------- 402 (433)
T KOG1462|consen 332 GADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN-------- 402 (433)
T ss_pred chhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee--------
Confidence 4467899999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred ceeEECCCCEECCCcEEcceEEcCC
Q 015225 374 GITILGEAVTVEDEVVVINSIVLPN 398 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v~~~~i~~~ 398 (411)
|.||.+-+|.++....+.++-.+
T Consensus 403 --C~Ig~~yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 403 --CIIGPGYVVEAKGKHGGEVLVSN 425 (433)
T ss_pred --eEecCCcEEcccccccccEeecc
Confidence 99999999997777766665443
No 136
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.42 E-value=5.4e-12 Score=111.04 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=56.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
.+.+.+++.+++++.|+++|+|++++.||++|.|+++|.|. ++.|+++|.|+.++.+. +++|+++|.||.++.+..+
T Consensus 90 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 168 (197)
T cd03360 90 SAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQG- 168 (197)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCC-
Confidence 34555556666666666666666666666666666666664 45666666666666665 4566666666666665554
Q ss_pred cCCcccceeEECCCCEECCCcEEc
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+.||+++.|+++++|.
T Consensus 169 --------~~ig~~~~v~~~~~v~ 184 (197)
T cd03360 169 --------VTIGAGAIIGAGAVVT 184 (197)
T ss_pred --------CEECCCCEECCCCEEc
Confidence 5556666555555553
No 137
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.41 E-value=3.2e-12 Score=108.08 Aligned_cols=95 Identities=23% Similarity=0.337 Sum_probs=78.1
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEEe-----eEECCCCEECCCcEEecCCcC
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVLN-----SIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----s~i~~~~~ig~~~~i~~~~~~ 369 (411)
+++++.|+++|+|.++++||+++.|+++++|.. ++||++|.|+++|+|.. ++|++++.|+.++.+.+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 77 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG---- 77 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee----
Confidence 567778888888888899999999999998874 69999999999999996 59999999999999987
Q ss_pred CcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 370 NAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
++|++++.|+.++.+ .+|.+++++.+..
T Consensus 78 ------~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 78 ------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred ------eEECCCCEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 788888888877766 2455555555544
No 138
>PLN02472 uncharacterized protein
Probab=99.40 E-value=3.4e-12 Score=114.96 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=78.6
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEe----eEECCCCEECCCcEEE-----------eeEECCCCEECCCcE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVL-----------NSIIGWKSSLGRWAR 362 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----------~s~i~~~~~ig~~~~ 362 (411)
.++++++|.++++|.+++.||+++.|+.+++|.. .+||++|.|+++|+|. +++||++|.||++|.
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcE
Confidence 4777888888888888889999999998888873 7999999999999994 589999999999998
Q ss_pred EecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcC
Q 015225 363 VQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNV 403 (411)
Q Consensus 363 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~ 403 (411)
+.+ |+|++++.||.+++| .+|+|++|+.|+.
T Consensus 141 L~~----------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 141 LRS----------CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred ECC----------eEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 865 777777777777665 4677777777774
No 139
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.40 E-value=2.3e-12 Score=106.79 Aligned_cols=109 Identities=23% Similarity=0.441 Sum_probs=90.3
Q ss_pred eEEEEEecCCCCCcccc-cCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFR-PLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~-plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|.+|||||| +|+||. + =|||++++|+|||+|+++.+.+ .+++|++.++.+...+++++.+ ++ ++
T Consensus 1 m~~iiMAGG--rGtRmg~~-----EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~----~g--v~ 65 (177)
T COG2266 1 MMAIIMAGG--RGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLES----VG--VK 65 (177)
T ss_pred CceEEecCC--cccccCCC-----cCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHh----cC--ce
Confidence 579999999 999997 4 5999999999999999999998 4899999988888889999876 23 55
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHH
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~ 132 (411)
++.. ...|--.-+..+.+.+. .++|++++|+++ +..+..+++.+.
T Consensus 66 vi~t-pG~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 66 VIET-PGEGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEEc-CCCChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 5553 34567788888888885 699999999986 445777777765
No 140
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.40 E-value=6.4e-12 Score=111.75 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=24.0
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
.+.||++++|+.++.| .+++|++++.|..++|+.
T Consensus 150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~ 190 (205)
T cd03352 150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPG 190 (205)
T ss_pred ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCC
Confidence 3667777777776655 577788888888777654
No 141
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.40 E-value=3e-12 Score=95.37 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=71.4
Q ss_pred EECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc-eE
Q 015225 316 SISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN-SI 394 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~ 394 (411)
+||+++.|++++.|.+++|+++|+|++++.|.+++|++++.|++++++.+ ++|++++.|+.++.+.+ ++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~----------svv~~~~~i~~~~~i~~~~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD----------SIIGDNAVIGENVRVVNLCI 70 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC----------CEECCCCEECCCCEEcCCeE
Confidence 47888999999999999999999999999999999999999999999987 89999999999999966 99
Q ss_pred EcCCCEEc
Q 015225 395 VLPNKVLN 402 (411)
Q Consensus 395 i~~~~~v~ 402 (411)
+++++.+.
T Consensus 71 ig~~~~i~ 78 (79)
T cd03356 71 IGDDVVVE 78 (79)
T ss_pred ECCCeEEC
Confidence 99998875
No 142
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.40 E-value=2.5e-12 Score=112.98 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=84.5
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRY 83 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~ 83 (411)
+.+|||||| .|+||.. +|.|++++|+|||+|+++.+.+. ++++++|+++...+.+.......... ..+.+
T Consensus 1 ~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~ 70 (190)
T TIGR03202 1 IVAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLAD--ERIML 70 (190)
T ss_pred CeEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcC--CCeEE
Confidence 358999999 9999964 89999999999999999888775 89999999876543221111110011 12344
Q ss_pred ee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHh
Q 015225 84 LK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKR 133 (411)
Q Consensus 84 v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~ 133 (411)
+. .+...|.+++++.+++.+.....+.+++++||+++ ...+..+++...+
T Consensus 71 ~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~ 123 (190)
T TIGR03202 71 VCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKR 123 (190)
T ss_pred EECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhh
Confidence 32 23345888999999987643235789999999986 4447777776543
No 143
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.39 E-value=3.1e-11 Score=107.25 Aligned_cols=214 Identities=16% Similarity=0.188 Sum_probs=126.9
Q ss_pred eEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~ 82 (411)
+.||||||| .|+||.. ..||.+++++|+|+|.|+++.|.+.+.+++|+|+++... +.+++.+.. ..+.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999986 789999999999999999999999889999999987654 444444433 3456
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcC
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADP 160 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~ 160 (411)
++. .+....+|++.++..+... .+.+++-.|--++ ...+..+++...+ +..+.+...+. .+ .....|
T Consensus 70 iv~--GG~tR~~SV~ngL~~l~~~-~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~--~D----Tik~v~- 138 (221)
T PF01128_consen 70 IVE--GGATRQESVYNGLKALAED-CDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPV--TD----TIKRVD- 138 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCT-SSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE---SS----EEEEES-
T ss_pred Eec--CChhHHHHHHHHHHHHHcC-CCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEec--cc----cEEEEe-
Confidence 654 4456789999999988733 2577777777765 4457888887654 23444555555 22 223444
Q ss_pred CCCceeEEeccCCCcccCcccc-eEEEeCHHHHHHhhhhhhcccccccccccchhhhhhhcccCCCCceeeeccchhhcc
Q 015225 161 NTKELLHYTEKPETFVSDLINC-GVYVFTPDFFTAIQGVLTHREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPL 239 (411)
Q Consensus 161 ~~~~v~~~~e~~~~~~~~~~~~-Giyi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 239 (411)
.++.+.+..+. +.++.+ -=..|+.+.+....+..... ...+ +|--..+
T Consensus 139 ~~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~-------------------------~~~~-tDdasl~ 187 (221)
T PF01128_consen 139 DDGFVTETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEE-------------------------GFEF-TDDASLV 187 (221)
T ss_dssp TTSBEEEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHH-------------------------THHH-SSHHHHH
T ss_pred cCCcccccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhc-------------------------CCCc-cCHHHHH
Confidence 46666665432 222222 22345554443222221100 0011 2211212
Q ss_pred c-CCCceEEEeecceeeecCCccchhhcchHH
Q 015225 240 A-GKKQLYTYETMDFWEQIKTPGMSLKCSSLY 270 (411)
Q Consensus 240 ~-~~~~v~~~~~~~~~~~I~t~~d~~~a~~~~ 270 (411)
. .+.++..++-+..-.-|.+|+|+..+...+
T Consensus 188 ~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 188 EAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 1 245788777666667789999998886543
No 144
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.39 E-value=7.2e-12 Score=114.19 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=25.2
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEE
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVL 347 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~ 347 (411)
.+++.||+++.|+++++|.+++.||+++.|++++.|. ...||++|.|+++|+|.
T Consensus 27 ~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~ 93 (255)
T PRK12461 27 GANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIH 93 (255)
T ss_pred CCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEe
Confidence 3333334444444444444444444444454444443 24455555555555554
No 145
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.39 E-value=3.6e-12 Score=106.44 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=82.4
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEE-----eeEECCCCEECCCcEEecCCc
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVL-----NSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~s~i~~~~~ig~~~~i~~~~~ 368 (411)
.|++.++|.++|+|.+++.||+++.|..+++|. .-.||.+|.|-+||+|. .++||+++.||.++.|.+
T Consensus 13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG--- 89 (176)
T COG0663 13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG--- 89 (176)
T ss_pred CCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE---
Confidence 577778888888888889999999999999987 58999999999999997 369999999999999988
Q ss_pred CCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCC
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSV 405 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~ 405 (411)
|.|+++|.||+|++| .+|+|++|+.|+.+-
T Consensus 90 -------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k 126 (176)
T COG0663 90 -------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGK 126 (176)
T ss_pred -------eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCc
Confidence 788888777777766 578888888887743
No 146
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.39 E-value=5.1e-12 Score=121.83 Aligned_cols=120 Identities=19% Similarity=0.259 Sum_probs=86.0
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| .|+||+ ..||+|++++|+|||+|+++.+.. .+++|+|++....+.+.+++.. ..
T Consensus 3 ~~~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~~~~~~~~~~------~~ 68 (366)
T PRK14489 3 ISQIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDPARYQDLFPG------LP 68 (366)
T ss_pred CCCceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCHHHHHhhccC------Cc
Confidence 677899999999 999995 359999999999999999999986 4889988665444434333211 12
Q ss_pred eEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 81 VRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 81 i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.........|..++++.+++.+. .+.+++++||+++ ...+..+++.+...+++
T Consensus 69 ~i~d~~~g~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 69 VYPDILPGFQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred EEecCCCCCCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 211112223588899999988764 5779999999975 44577777765544444
No 147
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.38 E-value=1.2e-11 Score=109.43 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=72.9
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
...+.+.++++++++|++++.|+++++|++++.||++|.|. +++|+++|.|++++.|. .++.++.+++++++
T Consensus 87 ~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~-----~~~~i~~~~~ig~~-- 159 (201)
T TIGR03570 87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIA-----PGVTLSGGVVIGEG-- 159 (201)
T ss_pred eEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEEC-----CCCEEeCCcEECCC--
Confidence 34567777888888888888887788888888888887774 66666666666666544 44444444444444
Q ss_pred CCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
|.||.++.|..++.+ .+|+++++++|..++|+..
T Consensus 160 -------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~ 194 (201)
T TIGR03570 160 -------VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGG 194 (201)
T ss_pred -------CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCC
Confidence 555555666556666 5789999999999988754
No 148
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.38 E-value=9.1e-12 Score=101.24 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=62.2
Q ss_pred EEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEe---------eEECCCCEE
Q 015225 292 TIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLN---------SIIGWKSSL 357 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------s~i~~~~~i 357 (411)
++.+.+++.+++.|++|++|.+++++..++.||++|.|+ +++|+++|.||++|.|.. ..|+++|.|
T Consensus 3 ~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~I 82 (147)
T cd04649 3 RIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLL 82 (147)
T ss_pred EecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEE
Confidence 455666777777777777777777777777777777775 478899999999999872 455555555
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.++.| + +.||++++|++|++|
T Consensus 83 G~ga~I-g----------v~IG~~~vIGaGsvV 104 (147)
T cd04649 83 GANSGI-G----------ISLGDNCIVEAGLYV 104 (147)
T ss_pred CCCCEE-e----------EEECCCCEECCCCEE
Confidence 555555 2 666777777766655
No 149
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.38 E-value=2e-11 Score=107.81 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=98.5
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch-HHHHHHHhhhcccCCc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE-REFALYVSSISNELKV 79 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~-~~i~~~~~~~~~~~~~ 79 (411)
|+.+.+|||||| .|+||.. ..||.+++++|+||++|+++.|...+.+++|+|+++... +.+.++.. ...+.
T Consensus 2 ~~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~ 73 (230)
T COG1211 2 RMMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADK 73 (230)
T ss_pred CceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCC
Confidence 456889999999 9999988 999999999999999999999999988999999987633 33333332 12334
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEec
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKV 145 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~ 145 (411)
++.++. ......+|++.+++.+....++.+|+..+--++ ...+..+++.. .+..+.+.+.++
T Consensus 74 ~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~alpv 137 (230)
T COG1211 74 RVEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAILALPV 137 (230)
T ss_pred eEEEec--CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhh--ccCCcEEEEeec
Confidence 566664 456778999999999875446777777777775 44578887433 334445555555
No 150
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=4.6e-12 Score=126.62 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=86.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCc------
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWA------ 361 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~------ 361 (411)
+++.+.+++.||+++.|+++|+|. +++||++|+|+++|+|.+++|+++|.||.++++. ++.|++++.||.++
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 466777788888888888888886 7999999999999999999999998888777776 55555555544432
Q ss_pred ----------------------EEecCCc----CCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCc
Q 015225 362 ----------------------RVQGNGD----YNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 362 ----------------------~i~~~~~----~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~ 408 (411)
.|+.+.- .......++||++++||.++.+ .+|+|++|++|.+++|+.
T Consensus 358 ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~ 437 (459)
T PRK14355 358 MGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPD 437 (459)
T ss_pred ECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCC
Confidence 2222210 0000112567777777777655 689999999999999876
Q ss_pred cc
Q 015225 409 II 410 (411)
Q Consensus 409 ~~ 410 (411)
.+
T Consensus 438 ~~ 439 (459)
T PRK14355 438 SL 439 (459)
T ss_pred cE
Confidence 43
No 151
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.38 E-value=5e-12 Score=99.31 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=63.6
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAV 382 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~ 382 (411)
++|++++.|. +++||++|.|+ ++.|.+|+|+++|.|+++|.|.+|+|++++.||+++.+.+ ++|++++
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~----------siig~~~ 69 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR----------AIIDKNV 69 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe----------EEECCCC
Confidence 3455566664 68888888888 8888888888888888888888888888888888888866 8888888
Q ss_pred EECCCcEEcce
Q 015225 383 TVEDEVVVINS 393 (411)
Q Consensus 383 ~i~~~~~v~~~ 393 (411)
.|++++.+.+.
T Consensus 70 ~Ig~~~~v~~~ 80 (104)
T cd04651 70 VIPDGVVIGGD 80 (104)
T ss_pred EECCCCEECCC
Confidence 88888777544
No 152
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.37 E-value=9.2e-12 Score=109.54 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=76.4
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~ 367 (411)
...+.+.+.+++++.+++++.|.++++|+++++||++|.|. +++|+++|.||++|.+. ++++..++.||++|.++.
T Consensus 84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~-- 161 (197)
T cd03360 84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGA-- 161 (197)
T ss_pred ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECC--
Confidence 34567777888888888888888888888888888888885 67777777777777765 566666666666555544
Q ss_pred cCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCCCCCcc
Q 015225 368 DYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
++.|..++.| .+|+++++++|.+++|+..
T Consensus 162 -------------~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~ 191 (197)
T cd03360 162 -------------GATIIQGVTIGAGAIIGAGAVVTKDVPDGS 191 (197)
T ss_pred -------------CCEEcCCCEECCCCEECCCCEEcCCCCCCC
Confidence 4444444444 5688899999999887654
No 153
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.37 E-value=5.1e-12 Score=94.10 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=70.3
Q ss_pred EECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc-ceE
Q 015225 316 SISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI-NSI 394 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~ 394 (411)
+||+++.|+++|.|.+++|+++|.|+++|.|.+++|++++.|++++++.+ ++|++++.|+.++.+. +++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~ 70 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIPPGSL 70 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEECCCCE
Confidence 47889999999999999999999999999999999999999999999987 8999999999999884 788
Q ss_pred EcCCCEEc
Q 015225 395 VLPNKVLN 402 (411)
Q Consensus 395 i~~~~~v~ 402 (411)
+++++.+-
T Consensus 71 v~~~~~ig 78 (79)
T cd05787 71 ISFGVVIG 78 (79)
T ss_pred EeCCcEeC
Confidence 88887663
No 154
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=2.6e-12 Score=120.19 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=95.5
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 295 GDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
..+.+++++.|||.|.|+|++.|++++.||..+.++++.||.++.+++=++|+++.||.+|.||+++...++...+- =
T Consensus 319 e~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK--~ 396 (460)
T COG1207 319 EGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNK--F 396 (460)
T ss_pred eccEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCccc--c
Confidence 35577788888888888888899999999999999999999999999999999999999999999988877533221 1
Q ss_pred eeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 375 ITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
+++||+++.||+++.+ .+..|++|++|++++|+.-+
T Consensus 397 ~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aL 439 (460)
T COG1207 397 KTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGAL 439 (460)
T ss_pred eeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCce
Confidence 2899999999999866 69999999999999998643
No 155
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.36 E-value=1.1e-11 Score=96.45 Aligned_cols=85 Identities=25% Similarity=0.225 Sum_probs=76.5
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcc
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
.+++++++++.|++++.|.++++||+++.|+++|.|. +++||++|.|+. .+.+|+|++++.+++++.|++
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~------- 79 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH------- 79 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-------
Confidence 3478999999999999999999999999999999998 599999999975 578999999999999999986
Q ss_pred cceeEECCCCEECCCcEE
Q 015225 373 LGITILGEAVTVEDEVVV 390 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v 390 (411)
++||+++.|++++..
T Consensus 80 ---siIg~~v~ig~~~~~ 94 (101)
T cd05635 80 ---SYLGSWCNLGAGTNN 94 (101)
T ss_pred ---eEECCCCEECCCcee
Confidence 999999999988765
No 156
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.35 E-value=1.4e-11 Score=108.64 Aligned_cols=101 Identities=14% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE---------------------
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL--------------------- 347 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~--------------------- 347 (411)
.++.+. ++.||+++.|+++|+|. +++||+++.|+++|.|.+++||++|.|++++.+.
T Consensus 13 ~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~ 90 (204)
T TIGR03308 13 PTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMY 90 (204)
T ss_pred CCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCcccccccccccccc
Confidence 356664 57899999999999998 8999999999999999999999999999999884
Q ss_pred -----------------eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 348 -----------------NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 348 -----------------~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+++||+++.||.++.|..+ +.||+++.|+++++|.+. +.+++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g---------v~Ig~~~~I~~gs~v~~~-i~~~~~~ 151 (204)
T TIGR03308 91 FDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG---------VTIGNGAVIAAGAVVTKD-VAPYTIV 151 (204)
T ss_pred cccccccccccccccCCCeEECCCCEECCCCEECCC---------CEECCCCEECCCCEECCC-CCCCcEE
Confidence 4567777777777777776 788888888888877543 5666655
No 157
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.35 E-value=4.4e-12 Score=126.56 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=76.8
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCccccee
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGIT 376 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~ 376 (411)
+.+++++.|+++|.|.++++||.+|.||+++.|.+++|++++.|++++.+.+++|+++|.||.++.+.+... .....+
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~--~~~~~~ 391 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDG--VKKHRT 391 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccc--cccCCc
Confidence 445666666666667666777777777777777777777777777777777777888888887776643110 000016
Q ss_pred EECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 377 ILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 377 ~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
+||++++||.++.| .+++|++|+.|.+++|+..+
T Consensus 392 ~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 432 (450)
T PRK14360 392 VIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSL 432 (450)
T ss_pred EeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCE
Confidence 66777777766655 58999999999999988654
No 158
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.34 E-value=1.3e-11 Score=108.67 Aligned_cols=100 Identities=18% Similarity=0.368 Sum_probs=71.5
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCC-cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcce
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAG-QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPV 81 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g-~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i 81 (411)
++.+|||||| .|+||+ .+|+|++++| +|+|+|+++.+... +++|+|++++ +.. . . .+
T Consensus 8 ~i~~vILAgG--~s~RmG-----~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~--~~~----~-----~--~~ 65 (196)
T PRK00560 8 NIPCVILAGG--KSSRMG-----ENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKD--KKF----E-----F--NA 65 (196)
T ss_pred CceEEEECCc--ccccCC-----CCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECc--hhc----c-----c--CC
Confidence 5789999999 999994 4999999999 99999999999874 7888888764 111 1 1 12
Q ss_pred EEeeC--CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCC-hHHH
Q 015225 82 RYLKE--DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFP-LPDL 127 (411)
Q Consensus 82 ~~v~~--~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~-l~~~ 127 (411)
.++.. ....|...++..++.... .+.+++++||+++ +.+ +..+
T Consensus 66 ~~v~d~~~~~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 66 PFLLEKESDLFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred cEEecCCCCCCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 33332 233466666665555443 5899999999986 333 4454
No 159
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=123.23 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=69.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECC---------
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGR--------- 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~--------- 359 (411)
++.+.+++.||+++.|+++|.|. +++||++|.|+++|.|.+|+|+++|.|++++.|. ++.+++++.||+
T Consensus 277 ~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i 355 (456)
T PRK09451 277 NVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355 (456)
T ss_pred CeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceee
Confidence 44555555666666666666664 5666666666666666666666666665555554 444444444333
Q ss_pred -------------------------CcEEecCCcCCcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 360 -------------------------WARVQGNGDYNAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 360 -------------------------~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
++.+.+... .....++||++|+||.++.+ .+++|++|++|.+++|+
T Consensus 356 ~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~--~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~ 433 (456)
T PRK09451 356 GKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDG--ANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAE 433 (456)
T ss_pred CCCCccCccccccccEECCCCEEcCCeEEecccC--cccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCC
Confidence 333322100 00012667777777777765 58999999999999987
Q ss_pred cc
Q 015225 408 EI 409 (411)
Q Consensus 408 ~~ 409 (411)
.-
T Consensus 434 ~~ 435 (456)
T PRK09451 434 NE 435 (456)
T ss_pred CC
Confidence 53
No 160
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=1.3e-11 Score=123.33 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=77.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec---
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG--- 365 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~--- 365 (411)
.+.+.++++||+++.|+++|.|. +++||++|.|+++|.|.+++|+++|.||+++.|. +++|++++.||.++.+.+
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i 359 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVL 359 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEe
Confidence 44556678888888888888886 7999999999999999999999999999999998 899999999998876644
Q ss_pred --CCc--CCcccceeEECCCCEECCCc
Q 015225 366 --NGD--YNAKLGITILGEAVTVEDEV 388 (411)
Q Consensus 366 --~~~--~~~~~~~~~i~~~~~i~~~~ 388 (411)
+.. +...++.++||+++.|++++
T Consensus 360 ~~~~~i~~~~~ig~~~ig~~~~Ig~~~ 386 (456)
T PRK14356 360 GKGAKANHLTYLGDAEIGAGANIGAGT 386 (456)
T ss_pred cCCcEecccccccCeEECCCCEECCCc
Confidence 111 23344556677777766664
No 161
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=2.9e-11 Score=121.51 Aligned_cols=110 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITI 377 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~ 377 (411)
+|++++.|++++.|.++++||+++.||.++.+.+++|++++.|++.+.+.+++||++|.||.++.+.++... ..+.++
T Consensus 324 iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~--~~~~~~ 401 (482)
T PRK14352 324 EIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGV--NKHRTT 401 (482)
T ss_pred EEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccc--cCCCCe
Confidence 344444444444444445555555555555555566666666666666677778888888888776542110 011267
Q ss_pred ECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 378 LGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 378 i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
||++++||.++.+ .+++|++|++|.+++++..
T Consensus 402 IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~ 440 (482)
T PRK14352 402 IGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGA 440 (482)
T ss_pred ECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCc
Confidence 7777777777665 6899999999999988764
No 162
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.29 E-value=2.8e-11 Score=104.74 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-------------eeEECCCCE
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-------------NSIIGWKSS 356 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~s~i~~~~~ 356 (411)
+-+.+.+.||++++|||.|+|++++.||++++|+++++|. .+.||.+++|-..+.|+ ..+||+++.
T Consensus 10 AiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~ 89 (260)
T COG1043 10 AIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNT 89 (260)
T ss_pred eeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCe
Confidence 3344444455555555555555555555555555555554 45666666666555552 347777777
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
|.+++.+..+.. ...|.+.||+++.+.+.+-| .+|+||.+.++..+
T Consensus 90 IRE~vTi~~GT~--~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 90 IREFVTIHRGTV--QGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred EeeEEEEecccc--CCceeEEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 777777766521 11133555555555555555 45555555555443
No 163
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=3.8e-11 Score=120.11 Aligned_cols=113 Identities=14% Similarity=0.202 Sum_probs=75.0
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccce
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+++||+++.|+++|.|.++++||++|.|++++.|.+++|++++.+++.+.+.+++|++++.||.++.+.+.... ....
T Consensus 316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~--~~~~ 393 (458)
T PRK14354 316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGK--NKFK 393 (458)
T ss_pred CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccc--cccC
Confidence 34566666666666666667777777777777777777777777777777777777777777777666432100 0001
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
+.||+++++|.++.+ .+++|++|+.|.+++|+..+
T Consensus 394 ~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 435 (458)
T PRK14354 394 TIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDAL 435 (458)
T ss_pred CEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCE
Confidence 555666666655544 68999999999999987643
No 164
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.26 E-value=3e-11 Score=105.16 Aligned_cols=112 Identities=26% Similarity=0.471 Sum_probs=81.7
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++|.+|||||| +|+|| . +|+|++++|+||++|+++.|... .+.++|....+.+. +. ..+
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~~~---~~-----~~g-- 61 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQGR---YA-----EFG-- 61 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCchhh---hh-----ccC--
Confidence 568999999999 99999 4 89999999999999999999996 44566655544331 11 223
Q ss_pred eEEeeCCCCC-CChHHHHHHHHHhhccCCCeEEEEcCCccc-CC-ChHHHHHHHHhcC
Q 015225 81 VRYLKEDKPH-GSAGGLYYFRDMIMEENPSHIILLNCDVCC-SF-PLPDLLEAHKRYG 135 (411)
Q Consensus 81 i~~v~~~~~~-g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~-~l~~~l~~~~~~~ 135 (411)
++++...... |...+++.+++... .+++++++||+++ .. .+..+.....+.+
T Consensus 62 ~~vv~D~~~~~GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 LPVVPDELPGFGPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CceeecCCCCCCCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 3444433333 99999999999886 6899999999986 33 3555555544333
No 165
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.26 E-value=9e-11 Score=95.46 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=16.4
Q ss_pred eEECCCCEECCCcEE-----cceEEcCCCEEcCCC
Q 015225 376 TILGEAVTVEDEVVV-----INSIVLPNKVLNVSV 405 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~ 405 (411)
+.||++++||.++.| .+|+|++|++|.++.
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEEeCCe
Confidence 444555555555444 456666666666554
No 166
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.26 E-value=1.3e-10 Score=103.39 Aligned_cols=56 Identities=30% Similarity=0.442 Sum_probs=27.5
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEE
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVV 346 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i 346 (411)
+.+.+++.||++++|+++|.|.+++.||++|.|++++.|.+ ++|+++|.|+++++|
T Consensus 14 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 14 AVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 33344444444444444444444444555555555555543 555555555555555
No 167
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=4.4e-11 Score=119.89 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec--
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG-- 365 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~-- 365 (411)
.++.+.+++.||+++.|+++|.|. +++||++|.|+++++|.+++|+++|.|++++.+. +++|++++.|++++.+.+
T Consensus 281 ~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~ 359 (481)
T PRK14358 281 PGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNAR 359 (481)
T ss_pred CCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCce
Confidence 466777777788888888888885 7899999999999999999999999999999997 799999999999777543
Q ss_pred ---CCc--CCcccceeEECCCCEECCCcEE
Q 015225 366 ---NGD--YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 366 ---~~~--~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.. +-..++.++||++|.||.++++
T Consensus 360 i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i 389 (481)
T PRK14358 360 LDAGVKAGHLAYLGDVTIGAETNVGAGTIV 389 (481)
T ss_pred ecCCcccCceEEECCeEEcCCceEcCCEEE
Confidence 110 1122344777777777777655
No 168
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.24 E-value=4.6e-11 Score=116.55 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=77.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECC---CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.+.+++.+.| .++.|+++|.|++ +++||++|.||++|+|.+|+|+++|.|+++|.|.+|+|++++.|++++++.++
T Consensus 282 ~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 282 PQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred CCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCC
Confidence 3455555555 3455666666653 68999999999999999999999999999999999999999999999999886
Q ss_pred CcCCcccceeEECCCCEECCCcEE
Q 015225 367 GDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 367 ~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
... .++||++++|++++++
T Consensus 361 ~~~-----~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 361 KEV-----ITVIGENEVIGVGTVI 379 (380)
T ss_pred Cce-----eEEEeCCCCCCCCcEe
Confidence 332 2578999888887654
No 169
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.23 E-value=9.3e-11 Score=113.41 Aligned_cols=109 Identities=17% Similarity=0.323 Sum_probs=78.1
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|+++.+|||||| +|+||+ .+|+|++++|+|||+|+++.+.. ..++|+|+++.... ..+ .. ++
T Consensus 172 ~~~i~~iILAGG--~SsRmG-----~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~--~~~-~~----~~-- 233 (369)
T PRK14490 172 EVPLSGLVLAGG--RSSRMG-----SDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQA--EQY-RS----FG-- 233 (369)
T ss_pred cCCceEEEEcCC--ccccCC-----CCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchh--hHH-hh----cC--
Confidence 456789999999 999995 49999999999999999999986 37888887654321 111 11 23
Q ss_pred eEEeeC-CCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHH
Q 015225 81 VRYLKE-DKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEA 130 (411)
Q Consensus 81 i~~v~~-~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~ 130 (411)
+.++.. ....|...++..+++... .+.+++++||+++ ...+..+++.
T Consensus 234 v~~i~d~~~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 234 IPLITDSYLDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CcEEeCCCCCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 333332 334688888888877543 4689999999986 3345666554
No 170
>PRK10502 putative acyl transferase; Provisional
Probab=99.23 E-value=8.8e-11 Score=101.95 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=57.6
Q ss_pred cEECCCCEECCCCEECC--CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe----------------eEECCCC
Q 015225 297 VYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN----------------SIIGWKS 355 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~----------------s~i~~~~ 355 (411)
+.||+++.|.+++.|.. ++.||++|.|+++|.|. .++||++|.|+++|+|.. .+|+++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 35666666666666653 58888888888888886 578899999988888741 3555555
Q ss_pred EECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 356 SLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 356 ~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
.||+++.|..+ +.||+++.|+++++|
T Consensus 132 ~Ig~~a~I~~G---------v~Ig~~~vIga~svV 157 (182)
T PRK10502 132 WLAADVFVAPG---------VTIGSGAVVGARSSV 157 (182)
T ss_pred EEcCCCEEcCC---------CEECCCCEECCCCEE
Confidence 55555555554 555555555555554
No 171
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.22 E-value=4.7e-11 Score=119.14 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=26.1
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCccc
Q 015225 376 TILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEII 410 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~~ 410 (411)
++||++++||.++.| .++.|++|++|.+++|+..+
T Consensus 384 ~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~ 425 (448)
T PRK14357 384 TFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSL 425 (448)
T ss_pred cEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcE
Confidence 566776666666644 68899999999999987643
No 172
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.22 E-value=2.3e-10 Score=103.88 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=79.3
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCC-CcEEEEecccch--HHHHHHHhhhcccCCcceE
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPN-LAQIFLIGFYEE--REFALYVSSISNELKVPVR 82 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~g-i~~I~Iv~~~~~--~~i~~~~~~~~~~~~~~i~ 82 (411)
||||||| .|+||. +|.|++++|+|||+|+++.+... + +++++|+++... +.+.+++.. .+ +.
T Consensus 2 aiIlA~G--~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~-~~~~~ivVv~~~~~~~~~i~~~~~~----~~--v~ 66 (233)
T cd02518 2 AIIQARM--GSTRLP------GKVLKPLGGKPLLEHLLDRLKRS-KLIDEIVIATSTNEEDDPLEALAKK----LG--VK 66 (233)
T ss_pred EEEeeCC--CCCCCC------CCcccccCCccHHHHHHHHHHhC-CCCCeEEEECCCCcccHHHHHHHHH----cC--Ce
Confidence 7999999 999993 49999999999999999999986 5 899999887654 455555442 22 33
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeE
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~ 139 (411)
++.... .+.......+.+. ...+.++++.||+++ ...++.+++.+...+.+.+
T Consensus 67 ~v~~~~-~~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 67 VFRGSE-EDVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred EEECCc-hhHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 333221 1222222222221 225789999999996 5568899988876555543
No 173
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.22 E-value=1.2e-10 Score=91.44 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=62.3
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.+.+ .+++||+++.|+ ++.|. +++|+++|.|+++|.|.+|+|++++.|+.++.+.+|+|++++.|++++++.++
T Consensus 7 ~~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 7 RGEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CCEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 4445 346778888887 77776 78999999999999999999999999999999999999999999998888775
No 174
>PLN02694 serine O-acetyltransferase
Probab=99.22 E-value=5.8e-11 Score=107.89 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=57.4
Q ss_pred EECCCCEECCCCEECC--CcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccc
Q 015225 298 YIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLG 374 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~ 374 (411)
-|++++.||+++.|.. +++||++|+||++|.|.+ +++|. + +.++...+++||++|.||.++.|.++
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilgg-------- 230 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGN-------- 230 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCC--------
Confidence 3444444444444442 567777777777666642 22222 1 33445567888888888888888776
Q ss_pred eeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 375 ITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 375 ~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.||++++|+++++|... |.+++++
T Consensus 231 -i~IGd~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 231 -VKIGEGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred -CEECCCCEECCCCEECCc-CCCCcEE
Confidence 888888888888888432 5555555
No 175
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.2e-10 Score=86.85 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred CCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc-eEE
Q 015225 318 SANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN-SIV 395 (411)
Q Consensus 318 g~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~i 395 (411)
++++.|++++.|. +++|+++|.|+++|.|.++++++++.|++++++.+ +++++++.|++++.+.+ +++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~----------sii~~~~~v~~~~~~~~~~~i 72 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS----------SIVGWNSTVGRWTRLENVTVL 72 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC----------CEEeCCCEECCCcEEecCEEE
Confidence 3334444444442 34558888899999999999999999999999988 89999999999998854 888
Q ss_pred cCCCEEc
Q 015225 396 LPNKVLN 402 (411)
Q Consensus 396 ~~~~~v~ 402 (411)
++++.+.
T Consensus 73 g~~~~i~ 79 (80)
T cd05824 73 GDDVTIK 79 (80)
T ss_pred CCceEEC
Confidence 8887764
No 176
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.21 E-value=1.5e-10 Score=109.85 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=78.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
++.+|||||| +|+||+ .+|.|+++.|+||++|+++.|... +++|+|+++... .. ... + ..+.
T Consensus 160 ~i~~IILAGG--kSsRMG-----~dKaLL~~~GkpLl~~~ie~l~~~--~~~ViVv~~~~~--~~-~~~-----~-~~v~ 221 (346)
T PRK14500 160 PLYGLVLTGG--KSRRMG-----KDKALLNYQGQPHAQYLYDLLAKY--CEQVFLSARPSQ--WQ-GTP-----L-ENLP 221 (346)
T ss_pred CceEEEEecc--ccccCC-----CCcccceeCCccHHHHHHHHHHhh--CCEEEEEeCchH--hh-hcc-----c-cCCe
Confidence 4679999999 999995 499999999999999999999874 788988875332 11 100 0 0223
Q ss_pred Eee-CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-C-CChHHHHHHH
Q 015225 83 YLK-EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-S-FPLPDLLEAH 131 (411)
Q Consensus 83 ~v~-~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~-~~l~~~l~~~ 131 (411)
++. .....|...+++.+++... .+.+++++||+++ + ..+..+++.+
T Consensus 222 ~I~D~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 222 TLPDRGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred EEeCCCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 333 2335699999999988754 3578999999996 3 3467776654
No 177
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.21 E-value=2.1e-10 Score=100.43 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=68.8
Q ss_pred cCCcEECCCCEECCCCEE----CCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe------------------
Q 015225 294 AGDVYIHPSAKVHPTAKI----GPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN------------------ 348 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~------------------ 348 (411)
.+...+|+++.++.++.+ .+...||+++.|++++.|. ++.||++|.|++++.|.+
T Consensus 41 ~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~ 120 (192)
T PRK09677 41 DGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLP 120 (192)
T ss_pred CCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccC
Confidence 345567777777777777 3568889999999888886 688999999998888863
Q ss_pred ----------eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 349 ----------SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 349 ----------s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
++|+++|.||.++.+..+ ++||++|+|+++++|..+ +.+++++
T Consensus 121 ~~~~~~~~~~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~Iga~s~v~~~-i~~~~~~ 173 (192)
T PRK09677 121 PDMRTLESSAVVIGQRVWIGENVTILPG---------VSIGNGCIVGANSVVTKS-IPENTVI 173 (192)
T ss_pred hhhcccccCCeEEcCCcEECCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEE
Confidence 346666666666666655 666666666666666443 4455444
No 178
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.21 E-value=8.6e-11 Score=106.83 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=62.5
Q ss_pred CCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEeeEECCCCEECC---CcEEEeeEECCCCEECCCcEEecCCcC
Q 015225 295 GDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLISCIVLDDVEIKE---NAVVLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
-++.|++++.||+++.|. .+++||++|.||++|.| .++++||. .+...+++||++|.||.+|.|.++
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg--- 211 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN--- 211 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC---
Confidence 344555555555555554 24566666666666665 55555553 222345788999999999988888
Q ss_pred CcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 370 NAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.||++++||+|++|... |.+++++.
T Consensus 212 ------v~IG~~a~IGAgSvV~~d-Vp~~~~v~ 237 (273)
T PRK11132 212 ------IEVGRGAKIGAGSVVLQP-VPPHTTAA 237 (273)
T ss_pred ------CEECCCCEECCCCEECcc-cCCCcEEE
Confidence 899999999988888543 66666664
No 179
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.19 E-value=3e-10 Score=103.31 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCEECCCCEECCCcEECCCcEECCCcEEEe-eEECC--------CCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCc
Q 015225 302 SAKVHPTAKIGPNVSISANVRVGAGVRLIS-CIVLD--------DVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 302 ~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~--------~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
++.|++++.|..++.||++|.||++|.|.. +.|+. +++||++|.|+ +++|..++.||+++.|+.+
T Consensus 132 Ga~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag----- 206 (272)
T PRK11830 132 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMG----- 206 (272)
T ss_pred CCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCC-----
Confidence 333444444444444444444444444442 22222 35666666666 5666666666666666665
Q ss_pred ccceeEECCCCEECC
Q 015225 372 KLGITILGEAVTVED 386 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~ 386 (411)
++|+.++.|.+
T Consensus 207 ----~vV~~gt~I~~ 217 (272)
T PRK11830 207 ----VFLGQSTKIYD 217 (272)
T ss_pred ----CEEcCCeEECc
Confidence 66666666663
No 180
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.18 E-value=3.6e-10 Score=102.61 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=60.9
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcE-ECCCcE---EE-eeEECCCCEECCCcEEEe---------eEECCC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVR-VGAGVR---LI-SCIVLDDVEIKENAVVLN---------SIIGWK 354 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~~---------s~i~~~ 354 (411)
.+.+|.+.++|.+++.|++|++|.++++|+.++. +|.++. |. .++|+++|.||.+|.|.. +.||++
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~ 256 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEG 256 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCC
Confidence 4667777777777777777777777777777777 665555 43 678888888888888843 344444
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|.||.++.| + ..||++|+|++|++|
T Consensus 257 ~lIGagA~I--G---------I~IGd~~iIGAGavV 281 (341)
T TIGR03536 257 CLLGANAGI--G---------IPLGDRCTVEAGLYI 281 (341)
T ss_pred cEECCCCEE--e---------eEECCCCEECCCCEE
Confidence 444444444 2 556666666655544
No 181
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.17 E-value=3.7e-10 Score=98.92 Aligned_cols=93 Identities=22% Similarity=0.323 Sum_probs=56.7
Q ss_pred ECCCCEECCCCEE--CCCcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEe-------------------eEECCC
Q 015225 299 IHPSAKVHPTAKI--GPNVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLN-------------------SIIGWK 354 (411)
Q Consensus 299 i~~~~~v~~~~~i--~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------s~i~~~ 354 (411)
+|+++.|.+.+.+ +.++.||+++.|+.+|+|. +..||++|.|+.+|.|.. .+||++
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~ 137 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCC
Confidence 3444444443333 2456666666666666663 367788888888877751 466677
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
|.||.++.|..+ +.||++++|+++++|... +.+++++
T Consensus 138 v~IG~~~~I~~g---------v~IG~~~vIgagsvV~kd-vp~~~v~ 174 (203)
T PRK09527 138 VWIGSHVVINPG---------VTIGDNSVIGAGSVVTKD-IPPNVVA 174 (203)
T ss_pred cEECCCCEEcCC---------CEECCCCEECCCCEEccc-CCCCcEE
Confidence 777776666666 666666666666666432 4444444
No 182
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=2.9e-10 Score=113.42 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=89.0
Q ss_pred cEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEec----
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQG---- 365 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~---- 365 (411)
..+.+.+.||+++.|++++.|++++.||++|.|++++.|.+++||++|+||+++.|. +|+||++|.||+++.+.+
T Consensus 263 ~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~ 342 (446)
T PRK14353 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLG 342 (446)
T ss_pred EEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEEC
Confidence 355677888999999999999999999999999999999999999999999999998 899999999999987743
Q ss_pred -CCc--CCcccceeEECCCCEECCCcEE--------------cceEEcCCCEEcCC
Q 015225 366 -NGD--YNAKLGITILGEAVTVEDEVVV--------------INSIVLPNKVLNVS 404 (411)
Q Consensus 366 -~~~--~~~~~~~~~i~~~~~i~~~~~v--------------~~~~i~~~~~v~~~ 404 (411)
+.. +...++.++||+++.|+.++++ .+|.||++++|..+
T Consensus 343 ~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 398 (446)
T PRK14353 343 EGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP 398 (446)
T ss_pred CCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC
Confidence 111 2223445788888888887543 35566666555543
No 183
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.16 E-value=3.1e-10 Score=88.32 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=66.8
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~ 365 (411)
..+.+.++++||+++.|++++.|.++++||++|.||. .|.+|+|++++.++++++|.+++|++++.||+++.+.+
T Consensus 22 ~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 22 PFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 4567778889999999999999998999999999975 67899999999999999999999999999999988765
No 184
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.16 E-value=4.3e-10 Score=89.23 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=73.4
Q ss_pred cEECCCCEECCCCEECC--CcEECCCcEECCCcEEEee---EECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCc
Q 015225 297 VYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISC---IVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
++||+++.|++++.|.+ ++.||++|.|+++|.|.++ .+..++.+.......+++|++++.|++++.+..+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~----- 76 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----- 76 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCC-----
Confidence 56888888888888887 8999999999999999854 3334444444455567888888888888888776
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
+.|++++.|++++.|.. .+.+++++.
T Consensus 77 ----~~ig~~~~i~~~~~v~~-~i~~~~i~~ 102 (109)
T cd04647 77 ----VTIGDGAVVGAGSVVTK-DVPPNSIVA 102 (109)
T ss_pred ----CEECCCCEECCCCEEee-ECCCCCEEE
Confidence 88899999988888863 466666653
No 185
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.15 E-value=2.7e-10 Score=98.68 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=58.2
Q ss_pred CcEEcCCcEECCCCEECCCCEEC------CCcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEe--
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIG------PNVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLN-- 348 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~------~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-- 348 (411)
..++++.++||++++|+++++|+ +.+.||++++|-+.+.|+ ..+||++|+|.+++++..
T Consensus 21 ~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT 100 (260)
T COG1043 21 DVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGT 100 (260)
T ss_pred CCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccc
Confidence 33444444444444444444444 344455555444444443 267777777777777641
Q ss_pred ------eEECCCCEE------CCCcEEecCCc--CCccc-ceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCC
Q 015225 349 ------SIIGWKSSL------GRWARVQGNGD--YNAKL-GITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 349 ------s~i~~~~~i------g~~~~i~~~~~--~~~~~-~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~ 406 (411)
+.||+++.+ +.+|+|++.-- ++.++ |++.||+.+.||-.+-| ..|.+|-.+-|..++|
T Consensus 101 ~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVp 180 (260)
T COG1043 101 VQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVP 180 (260)
T ss_pred cCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCC
Confidence 234433222 22222221100 11222 33666666666655433 4677777777777877
Q ss_pred Cc
Q 015225 407 EE 408 (411)
Q Consensus 407 ~~ 408 (411)
|=
T Consensus 181 Py 182 (260)
T COG1043 181 PY 182 (260)
T ss_pred Ce
Confidence 63
No 186
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.14 E-value=7.5e-10 Score=89.34 Aligned_cols=76 Identities=28% Similarity=0.310 Sum_probs=49.2
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----------------eeEECCCCEECCCcEEE-eeEEC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----------------SCIVLDDVEIKENAVVL-NSIIG 352 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----------------~~~i~~~~~i~~~~~i~-~s~i~ 352 (411)
.+.+.++++||+++.|++++.|.+++.||++|.|++++.+. +++|+++|.|++++.+. ++.|+
T Consensus 10 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig 89 (119)
T cd03358 10 NVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGVTIG 89 (119)
T ss_pred CcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCcEEC
Confidence 45566667777777777777776677777777777777664 35566666666666665 45566
Q ss_pred CCCEECCCcEEec
Q 015225 353 WKSSLGRWARVQG 365 (411)
Q Consensus 353 ~~~~ig~~~~i~~ 365 (411)
+++.|++++.+..
T Consensus 90 ~~~~i~~~~~v~~ 102 (119)
T cd03358 90 EYALVGAGAVVTK 102 (119)
T ss_pred CCCEEccCCEEeC
Confidence 6666665555544
No 187
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.13 E-value=9.2e-10 Score=93.73 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCEECCCCEECC--CcEECCCcEECCCcEEEe----eEECCCCEECCCcEEEe-------------eEECCCCEECCCc
Q 015225 301 PSAKVHPTAKIGP--NVSISANVRVGAGVRLIS----CIVLDDVEIKENAVVLN-------------SIIGWKSSLGRWA 361 (411)
Q Consensus 301 ~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-------------s~i~~~~~ig~~~ 361 (411)
.+..|+..+.|.+ ++.||+++.|+++|.|.. ++||++|.|+++|+|.. ++|++++.|++++
T Consensus 6 ~~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~ 85 (161)
T cd03359 6 SGNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENC 85 (161)
T ss_pred CCCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCC
Confidence 3444555555543 567777777777777763 57888888888888864 3677888888777
Q ss_pred EEecCCcCCccc-ceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 362 RVQGNGDYNAKL-GITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 362 ~i~~~~~~~~~~-~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
.+... .+ ..+.|+++++|+.++.+ .++.+++++.|..+
T Consensus 86 ~i~~~-----~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 86 VVNAA-----QIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred EEEee-----EEcCCcEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 76540 00 00334444444444444 35555666666555
No 188
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.13 E-value=3.4e-10 Score=96.26 Aligned_cols=91 Identities=25% Similarity=0.356 Sum_probs=55.0
Q ss_pred cEECCCCEECCCCEECC--CcEECCCcEECCCcEEEeeEECCCCEECCC---cEEEeeEECCCCEECCCcEEecCCcCCc
Q 015225 297 VYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISCIVLDDVEIKEN---AVVLNSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~---~~i~~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
+.|++++.|++++.|.. +++|+++|.||++|.| +++|+++.. .....++||++|.||+++.+.++
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~----- 131 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN----- 131 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC-----
Confidence 34444444444444432 2444444444444444 333333321 11235689999999999998888
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
++||++++|+++++|... +.+++++.
T Consensus 132 ----v~IG~~~~Iga~s~V~~d-vp~~~~~~ 157 (162)
T TIGR01172 132 ----IEVGENAKIGANSVVLKD-VPPGATVV 157 (162)
T ss_pred ----cEECCCCEECCCCEECCC-CCCCCEEE
Confidence 889999999988888543 66676653
No 189
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.13 E-value=5e-10 Score=95.26 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=51.2
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEe---------eEECCCCEECCCcEEE-eeEECCCCEE
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLIS---------CIVLDDVEIKENAVVL-NSIIGWKSSL 357 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~s~i~~~~~i 357 (411)
+..+.+.+.||+++.|++ +++|++++.||+||.|++++.|.. ++||++|.|+.+++|. +++||+++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 456666666777776654 366666677777777777777763 3677777777777766 4666666666
Q ss_pred CCCcEEecC
Q 015225 358 GRWARVQGN 366 (411)
Q Consensus 358 g~~~~i~~~ 366 (411)
|+++.+..+
T Consensus 141 ga~s~V~~d 149 (162)
T TIGR01172 141 GANSVVLKD 149 (162)
T ss_pred CCCCEECCC
Confidence 666666554
No 190
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.13 E-value=7.2e-10 Score=86.67 Aligned_cols=89 Identities=25% Similarity=0.395 Sum_probs=62.5
Q ss_pred EECCCCEECCCCEECC--CcEECCCcEECCCcEEEeeEECCCCEECCCcE---EEeeEECCCCEECCCcEEecCCcCCcc
Q 015225 298 YIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISCIVLDDVEIKENAV---VLNSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
.|++++.|++++.|.. .++||+++.||++|.| ++++.|++++. +.+++|++++.|+.++.+..+
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~------ 72 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN------ 72 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc------
Confidence 4455555555555543 4566777777777665 66777777775 568899999999999998887
Q ss_pred cceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 373 LGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.|+++++|++++.|... +.++.++
T Consensus 73 ---~~Ig~~~~i~~~~~i~~~-~~~~~~~ 97 (101)
T cd03354 73 ---ITIGDNVKIGANAVVTKD-VPANSTV 97 (101)
T ss_pred ---CEECCCCEECCCCEECcc-cCCCCEE
Confidence 888888888888877543 5555544
No 191
>PRK10191 putative acyl transferase; Provisional
Probab=99.11 E-value=8.6e-10 Score=91.40 Aligned_cols=86 Identities=26% Similarity=0.280 Sum_probs=51.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEE--EeeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVV--LNSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i--~~s~i~~~~~ig~~~~i~~~~ 367 (411)
+.++.+.+.+|+++.|+++ .+++|++++.||++|.| +++|+||+.... ..+.||++|.||.++.+.++
T Consensus 41 g~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I-----~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~- 110 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTI-----RHGVTIGNRGADNMACPHIGNGVELGANVIILGD- 110 (146)
T ss_pred CcccCCCCEECCCeEECCC----CeEEECCCcEECCCCEE-----CCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCC-
Confidence 3444555566666666653 13445555555554433 444444443322 23577888888888877776
Q ss_pred cCCcccceeEECCCCEECCCcEEcce
Q 015225 368 DYNAKLGITILGEAVTVEDEVVVINS 393 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v~~~ 393 (411)
+.||++++|++++.|.++
T Consensus 111 --------v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 111 --------ITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred --------CEECCCCEECCCCEECCc
Confidence 778888888877777554
No 192
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=6.3e-10 Score=110.45 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=69.0
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEEeeEECCCCEECCCcEEe
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~ 364 (411)
...+.++++|...+.|++++.|+++++|+ +|.||++|.|. +|+||++|.|+.+|+|.+|+||++|.|+... +
T Consensus 253 ~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~- 329 (430)
T PRK14359 253 TIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-L- 329 (430)
T ss_pred eeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-e-
Confidence 44566777777777888888888888887 88889898884 5777888888888888888888777555532 2
Q ss_pred cCCc--CCcccceeEECCCCEECCCcEE
Q 015225 365 GNGD--YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 365 ~~~~--~~~~~~~~~i~~~~~i~~~~~v 390 (411)
.+.. +.+.++.|+||++|.||+++.+
T Consensus 330 ~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 330 NGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred ccccccccccccCCEECCCCEECCCceE
Confidence 1111 2334444888888888887543
No 193
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.10 E-value=1.5e-10 Score=91.46 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=85.6
Q ss_pred CcEECCCCEECCCCEECC---CcEECCCcEECCCcEEE-------------eeEECCCCEECCCcEEEeeEECCCCEECC
Q 015225 296 DVYIHPSAKVHPTAKIGP---NVSISANVRVGAGVRLI-------------SCIVLDDVEIKENAVVLNSIIGWKSSLGR 359 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~---~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~s~i~~~~~ig~ 359 (411)
+..+.-.+.|.+|++|++ ++.+|.+|+++.+|+|. +..||+++.|+++|++.-..|+..+++|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 445555667778888884 68999999999999997 47999999999999999999999999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEcCC
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~ 404 (411)
++.|+++ |++.+.|+|-+++++ +.+++.|-+++..+
T Consensus 113 naviGrr---------CVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 113 NAVIGRR---------CVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred ceeEcCc---------eEhhhheeccCCcccCcccccCCceEEcCC
Confidence 9999998 999999999999988 57777776666553
No 194
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.09 E-value=3.7e-10 Score=95.51 Aligned_cols=92 Identities=25% Similarity=0.213 Sum_probs=53.0
Q ss_pred CCcEEcCCcEECCCCEECCC--CEECCCcEECCCcEECCCcEEE---------eeEECCCCEECCCcEEE-eeEECCCCE
Q 015225 289 TSATIAGDVYIHPSAKVHPT--AKIGPNVSISANVRVGAGVRLI---------SCIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~--~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
.+..|++.+.||++.+|+++ .+|++.++||++|.|..+++|+ +-+||+++.||.|+.|- +-.||+++.
T Consensus 66 ~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~ak 145 (194)
T COG1045 66 FGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAK 145 (194)
T ss_pred cceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCE
Confidence 46677777778888877763 4555555555555555555554 23555555555555554 455555555
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
||+++++..+.++++ +++|--+++
T Consensus 146 IGA~sVVlkdVP~~~----tvvGvPAri 169 (194)
T COG1045 146 IGAGSVVLKDVPPNA----TVVGVPARV 169 (194)
T ss_pred ECCCceEccCCCCCc----eEecCcceE
Confidence 555555555444444 444444443
No 195
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=2.9e-09 Score=91.07 Aligned_cols=173 Identities=15% Similarity=0.153 Sum_probs=118.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVP 80 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~ 80 (411)
|++..|||+|.| .++|... |.+.+++|+|||.|+++.+...+-+++|+|.+. .+.+.+.- +++|.+
T Consensus 1 ~~~~iAiIpAR~--gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A----~~ygak 66 (228)
T COG1083 1 MMKNIAIIPARG--GSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD--SEEILEEA----KKYGAK 66 (228)
T ss_pred CcceEEEEeccC--CCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCC--cHHHHHHH----HHhCcc
Confidence 788899999999 8888854 999999999999999999999877888887664 23343333 335666
Q ss_pred eEEeeCCC-CCC---ChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCccccccee
Q 015225 81 VRYLKEDK-PHG---SAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFG 154 (411)
Q Consensus 81 i~~v~~~~-~~g---~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 154 (411)
+.+.+..+ ..+ +..+++++.+.++. ..+.++++++-.+. ..+|++.++.+.+...+..+.+++. +.. .|-
T Consensus 67 ~~~~Rp~~LA~D~ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~--e~~-p~k 142 (228)
T COG1083 67 VFLKRPKELASDRASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC--EHH-PYK 142 (228)
T ss_pred ccccCChhhccCchhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec--ccc-hHH
Confidence 65554332 112 23455666665542 23457778887774 6789999999999888888888876 322 222
Q ss_pred EEEEcCCCCceeEEeccCC-------CcccCcccceEEEeCHHHHH
Q 015225 155 ELIADPNTKELLHYTEKPE-------TFVSDLINCGVYVFTPDFFT 193 (411)
Q Consensus 155 ~v~~d~~~~~v~~~~e~~~-------~~~~~~~~~Giyi~~~~~~~ 193 (411)
.... .++++..+.+.++ -+.....+..+|+++.+.|-
T Consensus 143 ~f~~--~~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 143 AFSL--NNGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred HHHh--cCCceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 2222 3577888877652 13344557789999988763
No 196
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.09 E-value=1.4e-09 Score=93.49 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=28.1
Q ss_pred eeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEc
Q 015225 348 NSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLN 402 (411)
Q Consensus 348 ~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~ 402 (411)
.+.||++|.||.++.|..+ +.||++|+|+++++|... +.+++++-
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g---------v~Ig~~~~VgagavV~~~-vp~~~vv~ 162 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG---------VTIGDNSVIGAGSVVTKD-IPANVVAA 162 (169)
T ss_pred CcEeCCCEEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCcEEE
Confidence 3566666666666666665 666777777766666443 55555443
No 197
>PLN02694 serine O-acetyltransferase
Probab=99.09 E-value=4.3e-10 Score=102.22 Aligned_cols=92 Identities=23% Similarity=0.159 Sum_probs=74.2
Q ss_pred CCcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEE---------eeEECCCCEECCCcEEE-eeEECCCCE
Q 015225 289 TSATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLI---------SCIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
.+..|++.+.||+++.|++ +++|+.+++||++|.|..+++++ +++||++|.||.+++|. +++||+++.
T Consensus 159 ~gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~ 238 (294)
T PLN02694 159 FAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAK 238 (294)
T ss_pred eeEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCE
Confidence 3567888889999998887 88999889999999999998886 47999999999999995 889999999
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
||+++.|..+.++.. ++.|..+++
T Consensus 239 IGAgSVV~kdVP~~~----~v~G~PAki 262 (294)
T PLN02694 239 IGAGSVVLIDVPPRT----TAVGNPARL 262 (294)
T ss_pred ECCCCEECCcCCCCc----EEEccCcEE
Confidence 999988887544444 555554443
No 198
>PRK10191 putative acyl transferase; Provisional
Probab=99.09 E-value=7.6e-10 Score=91.72 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=62.6
Q ss_pred CCCcEEcCCcEECC--CCEECCCCEECCCcEECCCcEECCCcEE--EeeEECCCCEECCCcEEE-eeEECCCCEECCCcE
Q 015225 288 ITSATIAGDVYIHP--SAKVHPTAKIGPNVSISANVRVGAGVRL--ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWAR 362 (411)
Q Consensus 288 ~~~~~~~~~~~i~~--~~~v~~~~~i~~~~~ig~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~ 362 (411)
+..+.+++++.|++ ++.|++++.|+.++.|+.+|.||+.+.. ..+.||++|.||.++.+. ++.||+++.||+++.
T Consensus 45 ~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~ 124 (146)
T PRK10191 45 QAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSV 124 (146)
T ss_pred CCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCE
Confidence 45677888888888 5788888888888888888888766443 245889999999998888 688888888888888
Q ss_pred EecC
Q 015225 363 VQGN 366 (411)
Q Consensus 363 i~~~ 366 (411)
+..+
T Consensus 125 V~~d 128 (146)
T PRK10191 125 VLDS 128 (146)
T ss_pred ECCc
Confidence 8774
No 199
>PRK10502 putative acyl transferase; Provisional
Probab=99.08 E-value=1.2e-09 Score=94.81 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=47.8
Q ss_pred eeEECCCCEECCCcEEE---eeEECCCCEECCCcEEecCCcCC------cccceeEECCCCEECCCcEE-------cceE
Q 015225 331 SCIVLDDVEIKENAVVL---NSIIGWKSSLGRWARVQGNGDYN------AKLGITILGEAVTVEDEVVV-------INSI 394 (411)
Q Consensus 331 ~~~i~~~~~i~~~~~i~---~s~i~~~~~ig~~~~i~~~~~~~------~~~~~~~i~~~~~i~~~~~v-------~~~~ 394 (411)
+..||++|.|++++.|. ..+||++|.|++++.|..+.+.. ...+..+||++++||.+++| .+++
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 35667777777777775 46777777777777776544321 11233555666665555544 4566
Q ss_pred EcCCCEEcCCCCCc
Q 015225 395 VLPNKVLNVSVQEE 408 (411)
Q Consensus 395 i~~~~~v~~~~~~~ 408 (411)
|+++++|.+++|+.
T Consensus 151 Iga~svV~~~v~~~ 164 (182)
T PRK10502 151 VGARSSVFKSLPAN 164 (182)
T ss_pred ECCCCEEecccCCC
Confidence 66667666766654
No 200
>PLN02357 serine acetyltransferase
Probab=99.07 E-value=9.5e-10 Score=102.83 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=41.6
Q ss_pred cEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCc
Q 015225 291 ATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGD 368 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~ 368 (411)
..|++++.||+++.+++ +++|+++++||++|.|+.+++|++. +......+++||++|.||.++.|.++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~--------g~~~g~~~piIGd~V~IGagA~Ilgg-- 296 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT--------GKQSGDRHPKIGDGVLIGAGTCILGN-- 296 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc--------cccCCccCceeCCCeEECCceEEECC--
Confidence 34555555555555554 3444444555555555544444321 00111224555566666666555554
Q ss_pred CCcccceeEECCCCEECCCcEE
Q 015225 369 YNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||++++||++++|
T Consensus 297 -------V~IGdga~IGAgSVV 311 (360)
T PLN02357 297 -------ITIGEGAKIGAGSVV 311 (360)
T ss_pred -------eEECCCCEECCCCEE
Confidence 555666666655555
No 201
>PLN02357 serine acetyltransferase
Probab=99.07 E-value=1.1e-09 Score=102.29 Aligned_cols=93 Identities=25% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCcEEcCCcEECC--CCEECCCCEECCCcEECCCcEECCC---cEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCc
Q 015225 288 ITSATIAGDVYIHP--SAKVHPTAKIGPNVSISANVRVGAG---VRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWA 361 (411)
Q Consensus 288 ~~~~~~~~~~~i~~--~~~v~~~~~i~~~~~ig~~~~i~~~---~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~ 361 (411)
...+.++.++++.. +++|+++++|+.++.|+.+|+||.. ....+++||++|.||.|+.|. +++||+++.||.++
T Consensus 230 ~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IGAgS 309 (360)
T PLN02357 230 HPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIGAGS 309 (360)
T ss_pred CCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEECCCC
Confidence 35778888888875 6788888888888888888888753 223468899999999999886 89999999999999
Q ss_pred EEecCCcCCcccceeEECCCCEE
Q 015225 362 RVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
.|..+.+++. +++|.-+++
T Consensus 310 VV~~dVP~~~----~v~G~PArv 328 (360)
T PLN02357 310 VVLKDVPPRT----TAVGNPARL 328 (360)
T ss_pred EECcccCCCc----EEECCCeEE
Confidence 9988655555 556655554
No 202
>PLN02739 serine acetyltransferase
Probab=99.05 E-value=1.2e-09 Score=101.35 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=42.7
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCC
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNG 367 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~ 367 (411)
+..|++.+.||+++.|++ +++|+.+++||++|.|..+++|+.+ . ....-.+.+||++|.||.++.|.++
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~-----g---~~~g~r~p~IGd~V~IGagA~IlG~- 275 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGT-----G---KETGDRHPKIGDGALLGACVTILGN- 275 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCc-----C---CcCCCCCcEECCCCEEcCCCEEeCC-
Confidence 445555566666666653 4444444444444444444444310 0 0000013456666666666666655
Q ss_pred cCCcccceeEECCCCEECCCcEE
Q 015225 368 DYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 368 ~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||+++.||+|++|
T Consensus 276 --------V~IGd~aiIGAGSVV 290 (355)
T PLN02739 276 --------ISIGAGAMVAAGSLV 290 (355)
T ss_pred --------eEECCCCEECCCCEE
Confidence 666666666666665
No 203
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.05 E-value=1.6e-09 Score=80.19 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=24.8
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEEEee
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISC 332 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~ 332 (411)
+|++++.|++++.|.+++.||++|.|+++|.|.++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEec
Confidence 56777777777777666777777777777777653
No 204
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=98.24 Aligned_cols=92 Identities=20% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEEe---------eEECCCCEECCCcEEE-eeEECCCCE
Q 015225 289 TSATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLIS---------CIVLDDVEIKENAVVL-NSIIGWKSS 356 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~s~i~~~~~ 356 (411)
.+..+++.+.||+++.|++ +.+|+.++.||++|.|..+++|++ ++||++|.||.||+|. ++.||+++.
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence 4678888888999888884 678888899999999999988873 6889999999988887 788888888
Q ss_pred ECCCcEEecCCcCCcccceeEECCCCEE
Q 015225 357 LGRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 357 ig~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
||+++.|..+.++++ ++.|..+++
T Consensus 220 IGAgSvV~~dVp~~~----~v~G~PArv 243 (273)
T PRK11132 220 IGAGSVVLQPVPPHT----TAAGVPARI 243 (273)
T ss_pred ECCCCEECcccCCCc----EEEecCcEE
Confidence 888888877544444 555655554
No 205
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.05 E-value=2.6e-09 Score=96.61 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=47.5
Q ss_pred CCcEEcCCcEECCCCEECCCCEECCCcEECCCc-EECCCcEEEeeEECCCCEECCCcEEE-e--------------eEEC
Q 015225 289 TSATIAGDVYIHPSAKVHPTAKIGPNVSISANV-RVGAGVRLISCIVLDDVEIKENAVVL-N--------------SIIG 352 (411)
Q Consensus 289 ~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~-~i~~~~~i~~~~i~~~~~i~~~~~i~-~--------------s~i~ 352 (411)
.+.+|.+...+--+|.+++|++|.++++|..|+ +||+. .| ++.|.++|.||++|.|. + +.||
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IG 229 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIG 229 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEEC
Confidence 345555544455555555555555555555555 45553 33 34445555544444443 2 4555
Q ss_pred CCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 353 WKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 353 ~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++|.||.+|.| + ..||++|+||+|++|
T Consensus 230 e~~~IGagA~I--G---------I~IGd~~VVGAGaVV 256 (319)
T TIGR03535 230 ERCLLGANSGL--G---------ISLGDDCVVEAGLYV 256 (319)
T ss_pred CCcEECCCCEE--C---------eEECCCCEECCCCEE
Confidence 55555555555 2 566666666666655
No 206
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.04 E-value=1.7e-09 Score=106.84 Aligned_cols=81 Identities=11% Similarity=0.200 Sum_probs=71.0
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECC-------------------CCEE
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW-------------------KSSL 357 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~-------------------~~~i 357 (411)
+.+.+.+.+. ++.|. +++||++|.| ++|.|.+|+||++|+||++|.|.+|+|+. ++.|
T Consensus 293 ~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~I 369 (429)
T PRK02862 293 ARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGI 369 (429)
T ss_pred CCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEE
Confidence 3455555553 67776 6999999999 89999999999999999999999999976 6999
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
|++|.|.+ |+|+++|.||+++.+
T Consensus 370 g~~~~i~~----------~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 370 GEGTTIKR----------AIIDKNARIGNNVRI 392 (429)
T ss_pred CCCCEEEE----------EEECCCcEECCCcEE
Confidence 99999988 899999999999988
No 207
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.04 E-value=2.9e-09 Score=92.09 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=24.8
Q ss_pred eEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 349 SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 349 s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
..||++|.||.+|.|..+ +.||++++|+++++|... +.+++++
T Consensus 130 v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-i~~~~i~ 172 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVV 172 (183)
T ss_pred eEECCCcEECCCCEECCC---------CEECCCCEECCCCEEccc-cCCCcEE
Confidence 456666666666666555 666666666666666332 3444444
No 208
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.04 E-value=2.5e-09 Score=97.23 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeE-ECCCCE---ECCCcEEE-eeEECCCCEECCCcEEecCCcCCcc
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCI-VLDDVE---IKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~-i~~~~~---i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
+++++.|++.++|+.+++||++|+|.+++.|+ ++. +|++++ |-.+++|+ +|.||+++.| ++.+.++...+
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~-- 250 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIV-- 250 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCcee--
Confidence 44444444444444455555555555544443 122 333333 33333333 3334444444 22332221111
Q ss_pred cceeEECCCCEECCCcEE-----cceEEcCCCEEcCCCC
Q 015225 373 LGITILGEAVTVEDEVVV-----INSIVLPNKVLNVSVQ 406 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~~ 406 (411)
+.||++|.||.++.| .+|+|++|++|..+.+
T Consensus 251 ---V~IGe~~lIGagA~IGI~IGd~~iIGAGavVtagTk 286 (341)
T TIGR03536 251 ---ISVGEGCLLGANAGIGIPLGDRCTVEAGLYITAGTK 286 (341)
T ss_pred ---EEECCCcEECCCCEEeeEECCCCEECCCCEEeCCcE
Confidence 556666666666655 5788888888877654
No 209
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.3e-09 Score=102.26 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=80.4
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
.-.|......-|-+.+.+++.+. +|.|+.+|+|. + .|.||+|+.+++|+++|.|.+|+|+.+|.||++|.|..
T Consensus 273 ~w~IyT~~~~~pPak~~~~s~v~-nSLv~~GciI~-G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~---- 345 (393)
T COG0448 273 NWPIYTKNKNLPPAKFVNDSEVS-NSLVAGGCIIS-G-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRR---- 345 (393)
T ss_pred CCceeecCCCCCCceEecCceEe-eeeeeCCeEEE-e-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEE----
Confidence 33455555567778888888876 89999999996 4 99999999999999999999999999999999999999
Q ss_pred CcccceeEECCCCEECCCcEEcce
Q 015225 370 NAKLGITILGEAVTVEDEVVVINS 393 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v~~~ 393 (411)
++|.++|.|++|++|.+.
T Consensus 346 ------aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 346 ------AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred ------EEeCCCcEeCCCcEEcCC
Confidence 999999999999999654
No 210
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.01 E-value=2.5e-09 Score=105.64 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=63.9
Q ss_pred CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
+++||++|.| ++|.|.+|+|+++|+|+++|.|.+|+|+++|.||++++|.+ |+|+++++|+++++|.
T Consensus 327 ~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~----------~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 327 NSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR----------CVIDRGCVIPEGMVIG 393 (425)
T ss_pred eCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee----------EEECCCCEECCCCEEC
Confidence 8999999999 79999999999999999999999999999999999999987 9999999999998774
No 211
>PLN02739 serine acetyltransferase
Probab=99.00 E-value=2e-09 Score=99.82 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCcEEcCCcEEC--CCCEECCCCEECCCcEECCCcEECCCcEE---EeeEECCCCEECCCcEEE-eeEECCCCEECCCc
Q 015225 288 ITSATIAGDVYIH--PSAKVHPTAKIGPNVSISANVRVGAGVRL---ISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWA 361 (411)
Q Consensus 288 ~~~~~~~~~~~i~--~~~~v~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~ 361 (411)
...++++.+++|+ .+++|+++|+|+.++.|..+|+||....- .+.+||++|.||.|++|. ++.||+++.||+++
T Consensus 209 ~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGS 288 (355)
T PLN02739 209 HPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGS 288 (355)
T ss_pred CCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCC
Confidence 4566777777774 47788888888888888888888743211 246778888888888887 67888888888887
Q ss_pred EEecCCcCCcccceeEECCCCEE
Q 015225 362 RVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
.|..+.++++ ++.|..+++
T Consensus 289 VV~kDVP~~s----tvvG~PAri 307 (355)
T PLN02739 289 LVLKDVPSHS----MVAGNPAKL 307 (355)
T ss_pred EECCCCCCCc----EEEecCCEE
Confidence 7776544444 455544443
No 212
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.99 E-value=5e-09 Score=94.80 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=58.9
Q ss_pred cCCcEECCCCEECCCCEECCCcEECCCcEECCCc-EEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec----CCc
Q 015225 294 AGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGV-RLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG----NGD 368 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~----~~~ 368 (411)
..++.|.+.+.|--||.|+++++|..+++|..++ +|++++| +++|+++ ++||+++.|+.++.|.+ +..
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~iI--~g~I~Hd-----vvIGd~~~IgpGvsI~G~LsGg~~ 223 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGASMV--EGRISAG-----VVVGDGSDIGGGASIMGTLSGGGK 223 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCceE--EEEEccC-----CEECCCCEECCCceecceecCCCc
Confidence 3455555555555555555555555555555555 4544433 2344443 45666666666666333 211
Q ss_pred CCcccceeEECCCCEECCCcEE-----cceEEcCCCEEcCCCCC
Q 015225 369 YNAKLGITILGEAVTVEDEVVV-----INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 369 ~~~~~~~~~i~~~~~i~~~~~v-----~~~~i~~~~~v~~~~~~ 407 (411)
.+ +.||++|.||.++.| .+|+|++|++|.++.|-
T Consensus 224 ~p-----V~IGe~~~IGagA~IGI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 224 EV-----ISIGERCLLGANSGLGISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred cc-----EEECCCcEECCCCEECeEECCCCEECCCCEEeCCeEE
Confidence 11 455666666666554 58999999999888763
No 213
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.99 E-value=5e-09 Score=77.42 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=39.7
Q ss_pred EECCCcEECCCcEEEe-eEECCCCEECCCcEEEe---------eEECCCCEECCCcEEecCCcCCcccceeEECCCCEEC
Q 015225 316 SISANVRVGAGVRLIS-CIVLDDVEIKENAVVLN---------SIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVE 385 (411)
Q Consensus 316 ~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~ 385 (411)
+||+++.|++++.|.+ ++||++|.|+++|.|.+ ..|++++.++.++.+..+ +.|++++.|+
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~---------~~ig~~~~i~ 72 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGG---------VKIGDNAVIG 72 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCC---------CEECCCCEEC
Confidence 4556666666666654 67777777888887774 455555555555555554 5555555555
Q ss_pred CCcE
Q 015225 386 DEVV 389 (411)
Q Consensus 386 ~~~~ 389 (411)
+++.
T Consensus 73 ~~s~ 76 (78)
T cd00208 73 AGAV 76 (78)
T ss_pred cCcE
Confidence 4443
No 214
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.98 E-value=7.8e-09 Score=90.58 Aligned_cols=96 Identities=18% Similarity=0.297 Sum_probs=69.2
Q ss_pred CcEECCCcEECCCcEEE-----eeEECCCCEECCCcEEE---eeEECCCCEECCCcEEecCCcC----------------
Q 015225 314 NVSISANVRVGAGVRLI-----SCIVLDDVEIKENAVVL---NSIIGWKSSLGRWARVQGNGDY---------------- 369 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~---~s~i~~~~~ig~~~~i~~~~~~---------------- 369 (411)
+..+|+++.++.+|++. ...||++|.|+.++.|. ++.||++|.|++++.|.+..+.
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 44455556666666653 47899999999999987 6899999999999999864320
Q ss_pred --CcccceeEECCCCEECCCcEE-------cceEEcCCCEEcCCCCCcc
Q 015225 370 --NAKLGITILGEAVTVEDEVVV-------INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 370 --~~~~~~~~i~~~~~i~~~~~v-------~~~~i~~~~~v~~~~~~~~ 409 (411)
....+.++||++++|+.++.+ .+|+|+++++|.+++|+..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~ 171 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENT 171 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCc
Confidence 112244677777777766655 5788889999988887653
No 215
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.98 E-value=2.8e-09 Score=94.37 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=63.1
Q ss_pred CcEEcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEe---------eEECCCCEECC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLN---------SIIGWKSSLGR 359 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------s~i~~~~~ig~ 359 (411)
++.++-.+||++|+++.+++.|-=++.++++|+|.-+++++ ...||+||.||-++.|.+ .+|+++|.||+
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 44455555555555555544444455666666665555555 357788888888888864 48888999999
Q ss_pred CcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 360 WARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++.+..| +.+|++|+|++|++|
T Consensus 194 ns~~veG---------V~vGdg~VV~aGv~I 215 (271)
T COG2171 194 NSEVVEG---------VIVGDGCVVAAGVFI 215 (271)
T ss_pred ccceEee---------eEeCCCcEEecceEE
Confidence 8866666 888888888888877
No 216
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.8e-09 Score=101.54 Aligned_cols=89 Identities=27% Similarity=0.386 Sum_probs=72.2
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCE
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVT 383 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~ 383 (411)
+.. +.|.++++||++|.|+.++.|. +++||++|+|++++.|.+|+|+++|.|++++.+.+ |+|+++|+
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~----------sIi~~~~~ 321 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD----------SIIGENCK 321 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee----------eEEcCCcE
Confidence 444 7777888888888888888888 58899999999999999999999999999999999 89999999
Q ss_pred ECC-----CcEE-cceEEcCCCEEcCC
Q 015225 384 VED-----EVVV-INSIVLPNKVLNVS 404 (411)
Q Consensus 384 i~~-----~~~v-~~~~i~~~~~v~~~ 404 (411)
||+ .+.+ .+|.+.+|.++..+
T Consensus 322 ig~~~~i~d~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 322 IGASLIIGDVVIGINSEILPGVVVGPG 348 (358)
T ss_pred ECCceeecceEecCceEEcCceEeCCC
Confidence 985 1222 35555555555543
No 217
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.97 E-value=3.4e-09 Score=104.21 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=66.5
Q ss_pred ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 311 IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 311 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.++++||++|.|+ ++.|.+|+||++|+|+++|+|.+|+|+++|.||++|+|.+ |+|++++.|++++++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i 380 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR----------AILDKNVVVPPGATI 380 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe----------eEECCCCEECCCCEE
Confidence 34579999999998 9999999999999999999999999999999999999988 999999999999888
Q ss_pred cc
Q 015225 391 IN 392 (411)
Q Consensus 391 ~~ 392 (411)
.+
T Consensus 381 ~~ 382 (407)
T PRK00844 381 GV 382 (407)
T ss_pred CC
Confidence 55
No 218
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.97 E-value=2.2e-10 Score=105.22 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=76.8
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccC-------CCCcEEEEecccchHHHHHHHhhhc
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRI-------PNLAQIFLIGFYEEREFALYVSSIS 74 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-------~gi~~I~Iv~~~~~~~i~~~~~~~~ 74 (411)
-+|+|||| .||||+ ...||+|+||+ |+|++++.++++..+ .++..+++.+.+..+.+++++++..
T Consensus 2 a~viLaGG--~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 58999999 999996 48999999999 999999999999762 2577777777777788999999853
Q ss_pred ccCCcceEEeeC-CCCCCChHHHHHHHHHhhccC-CCeEEEEcCCcccCCChHHHHHHHHhcCCe
Q 015225 75 NELKVPVRYLKE-DKPHGSAGGLYYFRDMIMEEN-PSHIILLNCDVCCSFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 75 ~~~~~~i~~v~~-~~~~g~~~~l~~~~~~i~~~~-~~~~lv~~~D~i~~~~l~~~l~~~~~~~~~ 137 (411)
... ..+.+..| ..+..+.++... ..... ..+...-+||.+.......+++.|++++..
T Consensus 77 ~~~-~~v~~f~Q~~~P~~~~~~~~~----~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~ 136 (266)
T cd04180 77 QKN-SYVITFMQGKLPLKNDDDARD----PHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYR 136 (266)
T ss_pred CCC-CceEEEEeCCceEEeCCCCcc----cCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCE
Confidence 112 23333333 222223322221 11000 133444455555544445555555555544
No 219
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.95 E-value=3.8e-09 Score=93.57 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=62.9
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCcccceeEECC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNAKLGITILGE 380 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~ 380 (411)
+.|.|+++++.+++|++|++|-..+.|+ ++.++.++.|.-+++++ ..+||+||+||.++.|.+ .-.+.....++|++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G-VLep~~a~Pv~Igd 187 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG-VLEPLQANPVIIGD 187 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE-EecCCCCCCeEECC
Confidence 4555555555556666666666556665 56666666666666666 346777777777776655 11222223367777
Q ss_pred CCEECCCcEE-------cceEEcCCCEEcCCCCC
Q 015225 381 AVTVEDEVVV-------INSIVLPNKVLNVSVQE 407 (411)
Q Consensus 381 ~~~i~~~~~v-------~~~~i~~~~~v~~~~~~ 407 (411)
+|.||+++++ .+|+|+.|..|..++|.
T Consensus 188 ncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 188 NCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred ccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 7777777532 56777777777776654
No 220
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.95 E-value=7.6e-09 Score=88.85 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=42.5
Q ss_pred CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEeeE-------ECCCCEECCCcEEecCCcCCcccceeEECCCCE
Q 015225 314 NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLNSI-------IGWKSSLGRWARVQGNGDYNAKLGITILGEAVT 383 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~s~-------i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~ 383 (411)
++.||+++.|+.++.|. +.+||++|.|+.+|+|..+. ...+..++..+.|+++ +.||.+++
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~---------~~Ig~~a~ 132 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDN---------VWIGGGVI 132 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCC---------EEECCCCE
Confidence 34444444444444443 34566666666666664210 0011122233333333 44444455
Q ss_pred ECCCcEE-cceEEcCCCEEcCCCCCc
Q 015225 384 VEDEVVV-INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 384 i~~~~~v-~~~~i~~~~~v~~~~~~~ 408 (411)
|..++.| .+|+|++|++|.+++|+.
T Consensus 133 I~~gv~Ig~~~~VgagavV~~~vp~~ 158 (169)
T cd03357 133 ILPGVTIGDNSVIGAGSVVTKDIPAN 158 (169)
T ss_pred EeCCCEECCCCEECCCCEEccccCCC
Confidence 5555555 467777777777777654
No 221
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.95 E-value=1.3e-08 Score=80.44 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=55.6
Q ss_pred CcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEeeEECCCCEECCCcEE-EeeEECCCCEECCCcEEecCCcCCcc
Q 015225 296 DVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLISCIVLDDVEIKENAVV-LNSIIGWKSSLGRWARVQGNGDYNAK 372 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~s~i~~~~~ig~~~~i~~~~~~~~~ 372 (411)
+..||+++.|+++++|. +.+.||++|.|++++.|... .+.........+ ....|+++|.||.++.+..+
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g------ 74 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPG------ 74 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCC------
Confidence 34567777777777774 46788888888888777421 111111112222 25567777777777777666
Q ss_pred cceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 373 LGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 373 ~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
+.||+++.|++++.|.++ +.+++++
T Consensus 75 ---~~Ig~~~~i~~gs~v~~~-~~~~~~~ 99 (107)
T cd05825 75 ---VTIGEGAVVGARSVVVRD-LPAWTVY 99 (107)
T ss_pred ---CEECCCCEECCCCEEeCc-CCCCCEE
Confidence 677777777777666443 3444444
No 222
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.92 E-value=1.3e-08 Score=88.11 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=19.4
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEcCCCCCc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLNVSVQEE 408 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~~~~~~~ 408 (411)
+.||.+|.|.+++.| .+|+|++|++|.+++|+-
T Consensus 136 v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~ 169 (183)
T PRK10092 136 VWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDN 169 (183)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEEccccCCC
Confidence 444444444444444 457777777777777653
No 223
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.91 E-value=1.9e-08 Score=88.25 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=54.5
Q ss_pred cCCcEECCCCEECCCCEEC--CCcEECCCcEECCCcEEEe-------------------eEECCCCEECCCcEEE-eeEE
Q 015225 294 AGDVYIHPSAKVHPTAKIG--PNVSISANVRVGAGVRLIS-------------------CIVLDDVEIKENAVVL-NSII 351 (411)
Q Consensus 294 ~~~~~i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~-------------------~~i~~~~~i~~~~~i~-~s~i 351 (411)
+.++.||+++.|+.+|+|. .++.||++|.|+++|.|.. .+||++|.||.+++|. ++.|
T Consensus 73 g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~I 152 (203)
T PRK09527 73 GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTI 152 (203)
T ss_pred CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEE
Confidence 4678888888888888885 3589999999999999961 5677777777777766 5666
Q ss_pred CCCCEECCCcEEecC
Q 015225 352 GWKSSLGRWARVQGN 366 (411)
Q Consensus 352 ~~~~~ig~~~~i~~~ 366 (411)
|++++||+++.+..+
T Consensus 153 G~~~vIgagsvV~kd 167 (203)
T PRK09527 153 GDNSVIGAGSVVTKD 167 (203)
T ss_pred CCCCEECCCCEEccc
Confidence 666666666666553
No 224
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.89 E-value=7.8e-09 Score=87.55 Aligned_cols=86 Identities=23% Similarity=0.314 Sum_probs=68.3
Q ss_pred cEEcCCcEECCCCEECCCCEECC--CcEECCCcEECCCcEEEeeEECCCCEECCCcE---EEeeEECCCCEECCCcEEec
Q 015225 291 ATIAGDVYIHPSAKVHPTAKIGP--NVSISANVRVGAGVRLISCIVLDDVEIKENAV---VLNSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 291 ~~~~~~~~i~~~~~v~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~s~i~~~~~ig~~~~i~~ 365 (411)
.+..-++-|+|+|+||++..|.- +++||+.+.||++|.| .+++++|..-. -.+-.|+++|.||++++|.+
T Consensus 62 ~~~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG 136 (194)
T COG1045 62 SRFLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILG 136 (194)
T ss_pred HHhhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEc
Confidence 34556788999999999999983 5788888888888777 55555553211 23569999999999999999
Q ss_pred CCcCCcccceeEECCCCEECCCcEE
Q 015225 366 NGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 366 ~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
+ ..||++++||++++|
T Consensus 137 ~---------I~IGd~akIGA~sVV 152 (194)
T COG1045 137 N---------IEIGDNAKIGAGSVV 152 (194)
T ss_pred c---------eEECCCCEECCCceE
Confidence 7 999999999999888
No 225
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.89 E-value=1.8e-08 Score=79.60 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=52.0
Q ss_pred CcEECCCcEECCCcEEE---eeEECCCCEECCCcEEEee----EECCCCEECCCcEEecCCcCCcccceeEECCCCEECC
Q 015225 314 NVSISANVRVGAGVRLI---SCIVLDDVEIKENAVVLNS----IIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVED 386 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~s----~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 386 (411)
+..||++|.|++++.|. ...||++|.|++++.|... ...+...+...+.|+++ |.|+.++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~---------~~ig~~~~i~~ 73 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDG---------AWVAAEAFVGP 73 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCC---------CEECCCCEECC
Confidence 34566666666666665 3677888888888877521 11112223333444444 55555555555
Q ss_pred CcEE-cceEEcCCCEEcCCCCCcc
Q 015225 387 EVVV-INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 387 ~~~v-~~~~i~~~~~v~~~~~~~~ 409 (411)
++.| .+|+|++++.|.+++|+..
T Consensus 74 g~~Ig~~~~i~~gs~v~~~~~~~~ 97 (107)
T cd05825 74 GVTIGEGAVVGARSVVVRDLPAWT 97 (107)
T ss_pred CCEECCCCEECCCCEEeCcCCCCC
Confidence 5555 5788888888888887643
No 226
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.88 E-value=1.2e-07 Score=89.52 Aligned_cols=161 Identities=17% Similarity=0.319 Sum_probs=104.1
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccCC-----------CCcEEEEecc-cchHHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRIP-----------NLAQIFLIGF-YEEREFA 67 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~~-----------gi~~I~Iv~~-~~~~~i~ 67 (411)
++.+|+|||| .|||| +...||+|+|++ |+|++++.++.+..+. .+.-+ |.++ +..+.+.
T Consensus 15 ~va~viLaGG--~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~-imtS~~t~~~t~ 88 (323)
T cd04193 15 KVAVLLLAGG--QGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWY-IMTSEATHEETR 88 (323)
T ss_pred CEEEEEECCC--ccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEE-EEcChhHhHHHH
Confidence 5789999999 99999 458899999998 7999999999998741 24444 5444 6677889
Q ss_pred HHHhhhcccCCc---ceEEeeCC---------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcCCc
Q 015225 68 LYVSSISNELKV---PVRYLKED---------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNCDV 118 (411)
Q Consensus 68 ~~~~~~~~~~~~---~i~~v~~~---------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~ 118 (411)
+++++. +.+|. .+.+..|. .+.|.++.... .++.+....-+++.+...|.
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 999873 33444 44444321 13355544332 23344334468899999999
Q ss_pred cc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCceeEEeccC
Q 015225 119 CC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKELLHYTEKP 172 (411)
Q Consensus 119 i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~v~~~~e~~ 172 (411)
+. ...-..++-.+.+.++++.+-+.+.. .....-|.+.. | ..-.++++.+-|
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~-~~~ekvG~l~~~~-g~~~vvEysel~ 221 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKR-YPTEKVGVVVLVD-GKPQVVEYSEIS 221 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECC-CCCCceeEEEEEC-CeEEEEEeecCC
Confidence 64 22234566777788888776555431 12344455543 3 334577777654
No 227
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.86 E-value=1.2e-08 Score=98.89 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=54.9
Q ss_pred CEECCCCEECC----CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEec
Q 015225 303 AKVHPTAKIGP----NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQG 365 (411)
Q Consensus 303 ~~v~~~~~i~~----~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~ 365 (411)
+.|+++|+|++ +++||++|+|+++|.|.+|+|+++|.|+++|.|.+|+|++++.|+.+++|++
T Consensus 295 ~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 44455555544 8999999999999999999999999999999999999999999999988753
No 228
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.86 E-value=1.6e-08 Score=100.20 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=66.4
Q ss_pred CCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECC----------------C---CEECCCc
Q 015225 301 PSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW----------------K---SSLGRWA 361 (411)
Q Consensus 301 ~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~----------------~---~~ig~~~ 361 (411)
+++.+ .++.|.+ ++|+++|+|+ +|.|.+|+|+++|.|+++|+|.+|+++. + +.||++|
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 44555 4677764 9999999999 9999999999999999999999888855 2 3899999
Q ss_pred EEecCCcCCcccceeEECCCCEECCCcEE
Q 015225 362 RVQGNGDYNAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 362 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 390 (411)
++.+ ++|+++++||+++.+
T Consensus 381 ~i~~----------~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 381 KIRN----------AIIDKNARIGKNVVI 399 (436)
T ss_pred EEcc----------eEecCCCEECCCcEE
Confidence 9986 899999999999887
No 229
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.85 E-value=3.4e-08 Score=77.11 Aligned_cols=34 Identities=32% Similarity=0.296 Sum_probs=17.0
Q ss_pred eeEECCCCEECCCcEEE-eeEECCCCEECCCcEEe
Q 015225 331 SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQ 364 (411)
Q Consensus 331 ~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~ 364 (411)
+++|+++|.|+.++.+. .+.|++++.|++++.+.
T Consensus 54 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 54 HPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred CCEECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 34455555555555555 24455554444444443
No 230
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.82 E-value=2.7e-08 Score=96.11 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=19.9
Q ss_pred ECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEee
Q 015225 299 IHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNS 349 (411)
Q Consensus 299 i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s 349 (411)
+.+.+.|+++|.| .+++|+.+|.||++|.|.+|+|+++|+||++|+|.+|
T Consensus 251 i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~ 300 (353)
T TIGR01208 251 IRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDA 300 (353)
T ss_pred EcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeee
Confidence 3333344444444 2333433344444444444444444444444333333
No 231
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.82 E-value=3.9e-08 Score=77.86 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=7.9
Q ss_pred eEECCCCEECCCcEEE
Q 015225 332 CIVLDDVEIKENAVVL 347 (411)
Q Consensus 332 ~~i~~~~~i~~~~~i~ 347 (411)
+.||++|.|+++|.|.
T Consensus 22 v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 22 ITIGDNVLIGPNVTIY 37 (109)
T ss_pred eEECCCCEECCCCEEE
Confidence 4445555555555554
No 232
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.80 E-value=2.8e-08 Score=96.62 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=59.6
Q ss_pred EEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 292 TIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 292 ~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
.+++++.| +++.|+++|.|+ .+++|+++|.|+++|.|.+|+|+++|.|++++.+.+|+|++++.|++++++.+.
T Consensus 280 ~i~~~~~i-~~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 280 YYAENSKV-ENSLVANGCIIEGKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred EEcCCCEE-EEeEEcCCCEEeeEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 34444444 334444444443 379999999999999999999999999999999999999999999999999663
No 233
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.79 E-value=4.8e-09 Score=83.75 Aligned_cols=93 Identities=18% Similarity=0.141 Sum_probs=79.5
Q ss_pred CcEEcCCcEECCCCEECCCCEEC---CCcEECCCcEECCCcEEEe--------------eEECCCCEECCCcEEEeeEEC
Q 015225 290 SATIAGDVYIHPSAKVHPTAKIG---PNVSISANVRVGAGVRLIS--------------CIVLDDVEIKENAVVLNSIIG 352 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~s~i~ 352 (411)
.+.+++.+.|+++++|+|.+++- ++.+||+|+.|++.++|.| -+||.+....-+|...--.+|
T Consensus 20 Es~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvG 99 (190)
T KOG4042|consen 20 ESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVG 99 (190)
T ss_pred ecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhc
Confidence 34578888999999999988886 6789999999999999864 688888888888888888899
Q ss_pred CCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 353 WKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 353 ~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
++.+|+..+.+++| +.+.++|.||+++.+.
T Consensus 100 d~NVieskayvg~g---------v~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 100 DRNVIESKAYVGDG---------VSVSSGCSVGAKCTVF 129 (190)
T ss_pred CcceEeeeeEecCC---------cEEcCCceeccceEEe
Confidence 99999999999888 8888888888887773
No 234
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.74 E-value=8.7e-07 Score=87.36 Aligned_cols=186 Identities=18% Similarity=0.278 Sum_probs=115.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccC-------------CCCcEEEEecccchHHH
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRI-------------PNLAQIFLIGFYEEREF 66 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~-------------~gi~~I~Iv~~~~~~~i 66 (411)
++.+|||||| .||||+. ..||+|+||+ |+|+++++++++..+ ..+.-+++.+.+..+.+
T Consensus 106 kvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 5889999999 9999975 8999999994 899999999998863 12454555555667888
Q ss_pred HHHHhhhcccCCc---ceEEeeCC----------------------CCCCChHHHHH-----HHHHhhccCCCeEEEEcC
Q 015225 67 ALYVSSISNELKV---PVRYLKED----------------------KPHGSAGGLYY-----FRDMIMEENPSHIILLNC 116 (411)
Q Consensus 67 ~~~~~~~~~~~~~---~i~~v~~~----------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~ 116 (411)
++++.+. ..+|. .|.+..|. .+.|.++.... .++.+...+-+++.+...
T Consensus 181 ~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 181 RQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 9999863 22332 23322211 13355543332 134444444688999999
Q ss_pred CcccCCC-hHHHHHHHHhcCC-eeEEEEEecCcccccceeEEEEcCCCCceeEEeccCCC-----------cccCcccce
Q 015225 117 DVCCSFP-LPDLLEAHKRYGG-MGTMLVIKVSAESAHQFGELIADPNTKELLHYTEKPET-----------FVSDLINCG 183 (411)
Q Consensus 117 D~i~~~~-l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~v~~d~~~~~v~~~~e~~~~-----------~~~~~~~~G 183 (411)
|.+.... =..++-.+.+.++ ++.-.+.+. .....-|.+......-.|+++.|-+.. ......++.
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~--~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~ 337 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKR--EDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNIC 337 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecC--CCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceE
Confidence 9985322 2445566666665 543333333 333445665543022267888774311 113456789
Q ss_pred EEEeCHHHHHHhh
Q 015225 184 VYVFTPDFFTAIQ 196 (411)
Q Consensus 184 iyi~~~~~~~~l~ 196 (411)
.++|+.++++.+.
T Consensus 338 ~h~fsl~fl~~~~ 350 (482)
T PTZ00339 338 SHIFSLDFLKKVA 350 (482)
T ss_pred EEEEEHHHHHHHh
Confidence 9999999887653
No 235
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.72 E-value=6.7e-08 Score=86.63 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=84.2
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEe
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYL 84 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v 84 (411)
.|||+|.+ .++||.. |.|.+++|+|||+|+++.+.+...+++|+|.+... .+.+.+.+ ++.++.+.
T Consensus 1 iaiIpAR~--gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~--~i~~~~~~----~g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG--GSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDE--EIDDIAEE----YGAKVIFR 66 (217)
T ss_dssp EEEEEE-S--SSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSH--HHHHHHHH----TTSEEEE-
T ss_pred CEEEecCC--CCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCH--HHHHHHHH----cCCeeEEc
Confidence 38999999 9999975 99999999999999999999987889998887643 35566654 45566555
Q ss_pred eCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 85 KEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 85 ~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.....++......+...... ..+.++.+.||.++ +..+..+++.+.+..++
T Consensus 67 ~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 544433444443333444332 23478889999986 55689999999888765
No 236
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.70 E-value=8.9e-09 Score=81.54 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=76.8
Q ss_pred CcEEcC---CcEECCCCEECCCCEECC------------CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCC
Q 015225 290 SATIAG---DVYIHPSAKVHPTAKIGP------------NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWK 354 (411)
Q Consensus 290 ~~~~~~---~~~i~~~~~v~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~ 354 (411)
++.|++ ++.+|+.++++.+++|++ +..||+++.|+++|++.-..||..+.+|.+++ ||.+
T Consensus 45 g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gknav-----iGrr 119 (184)
T KOG3121|consen 45 GVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAV-----IGRR 119 (184)
T ss_pred CcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecccee-----EcCc
Confidence 444444 477899999999999985 46899999999999998877777777777665 7788
Q ss_pred CEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEEcCCCCC
Q 015225 355 SSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVLNVSVQE 407 (411)
Q Consensus 355 ~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~~~~ 407 (411)
|++.+.|+|.++ +++...+.+++-+++.++=-..+-+++++.++
T Consensus 120 CVlkdCc~ild~---------tVlPpet~vppy~~~~g~p~~~~G~~P~ctq~ 163 (184)
T KOG3121|consen 120 CVLKDCCRILDD---------TVLPPETLVPPYSTIGGNPAQVVGTEPRCTQN 163 (184)
T ss_pred eEhhhheeccCC---------cccCcccccCCceEEcCCCceeeccCchhhHH
Confidence 899999888887 88888888887777743322222245555443
No 237
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.65 E-value=2.4e-07 Score=77.07 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=56.6
Q ss_pred EECCCCEECC-CCEECC-CcEECCCcEECCCcEEEee--------E-----ECCCC-----EECCCcEEEeeEECCCCEE
Q 015225 298 YIHPSAKVHP-TAKIGP-NVSISANVRVGAGVRLISC--------I-----VLDDV-----EIKENAVVLNSIIGWKSSL 357 (411)
Q Consensus 298 ~i~~~~~v~~-~~~i~~-~~~ig~~~~i~~~~~i~~~--------~-----i~~~~-----~i~~~~~i~~s~i~~~~~i 357 (411)
.||+++.|++ .+.+.. .+.||++|.|++++.|... . ++++. ..........++|+++|.|
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~I 82 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWI 82 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEE
Confidence 3455555555 344432 5677777777777777432 0 01100 0111223346788888888
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEEcCCCEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
|.++.+..+ +.||+++.|+++++|... +.+++++
T Consensus 83 g~~~~i~~g---------v~Ig~~~vIgags~V~~~-v~~~~v~ 116 (145)
T cd03349 83 GHGATILPG---------VTIGDGAVIAAGAVVTKD-VPPYAIV 116 (145)
T ss_pred CCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCeEE
Confidence 888888777 888888888888887543 4555554
No 238
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-07 Score=84.23 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=53.0
Q ss_pred CCcEECCCcEECCCcEEE-eeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 313 PNVSISANVRVGAGVRLI-SCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
++++|.+++++.+.++|+ |..||.+++||+|+.+.+|||-+++.|.+++.+.. |+||.++.||..+.|.
T Consensus 287 gdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~----------sIigw~s~iGrWaRVe 356 (407)
T KOG1460|consen 287 GDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH----------SIIGWKSSIGRWARVE 356 (407)
T ss_pred eeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe----------eeecccccccceeeec
Confidence 344444444444444444 34457788889999999999999999999999999 9999999999887773
No 239
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=1.1e-06 Score=75.82 Aligned_cols=118 Identities=20% Similarity=0.245 Sum_probs=83.6
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccch--HHHHHHHhhhcccCC
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEE--REFALYVSSISNELK 78 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~--~~i~~~~~~~~~~~~ 78 (411)
|+++.+||-|.= .++||.. |.|+|+++.|||.++|+++.....+++++|.++..+ +.+..++.+ .|
T Consensus 1 ~~~I~~IiQARm--gStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G 68 (241)
T COG1861 1 MSMILVIIQARM--GSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HG 68 (241)
T ss_pred CCcEEEEeeecc--cCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cC
Confidence 677777777776 6788865 999999999999999999999867889999887543 445555544 22
Q ss_pred cceEEeeCCCCCCCh-HHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHHHhcCCe
Q 015225 79 VPVRYLKEDKPHGSA-GGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAHKRYGGM 137 (411)
Q Consensus 79 ~~i~~v~~~~~~g~~-~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~~~~~~~ 137 (411)
+.+.. |+. +.|.+....++....+.++=+.||.++ +.-++..++.|.+++++
T Consensus 69 --~~vfr-----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 --FYVFR-----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred --eeEec-----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 23322 343 344444444444445677788999986 34478899999888876
No 240
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.49 E-value=1.3e-06 Score=75.75 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCccCcccCC--cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee-CCCCCCChHHHHHHHHH
Q 015225 26 TPKPLFPLAG--QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK-EDKPHGSAGGLYYFRDM 102 (411)
Q Consensus 26 ~pK~llpi~g--~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~-~~~~~g~~~~l~~~~~~ 102 (411)
.+|+|++++| +|||+|+++.+.. .+++++|+++.... + ...+ +.++. .....|...++..+++.
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~~-~--------~~~~--~~~i~d~~~g~gpl~~~~~gl~~ 69 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQP-L--------PELP--APVLRDELRGLGPLPATGRGLRA 69 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCcc-c--------ccCC--CCEeccCCCCCCcHHHHHHHHHH
Confidence 4899999999 9999999998875 58999988865421 1 1112 23333 23345777777666654
Q ss_pred hhccCCCeEEEEcCCccc-C-CChHHHHHHHH
Q 015225 103 IMEENPSHIILLNCDVCC-S-FPLPDLLEAHK 132 (411)
Q Consensus 103 i~~~~~~~~lv~~~D~i~-~-~~l~~~l~~~~ 132 (411)
......+++++++||+++ + ..+..+++.+.
T Consensus 70 ~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 70 AAEAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred HHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 321225899999999986 3 34667666543
No 241
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.49 E-value=1.5e-07 Score=85.57 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=67.2
Q ss_pred CEECCCcEECCCcEECCCcEEEe-eEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCC
Q 015225 309 AKIGPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDE 387 (411)
Q Consensus 309 ~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 387 (411)
+.|.++..+.+-+.+|++|.|++ ++||.+|+|++|+.|.+|++..++.++.++-+.+ +++|.++.||.+
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s----------~ivg~~~~IG~~ 328 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISS----------SIVGWNVPIGIW 328 (371)
T ss_pred ccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHh----------hhccccccccCc
Confidence 33334444445555555555553 6669999999999999999999999999999988 899999999999
Q ss_pred cEE-cceEEcCCCEEcC
Q 015225 388 VVV-INSIVLPNKVLNV 403 (411)
Q Consensus 388 ~~v-~~~~i~~~~~v~~ 403 (411)
+.| ++|++|.+.+|..
T Consensus 329 ~~id~~a~lG~nV~V~d 345 (371)
T KOG1322|consen 329 ARIDKNAVLGKNVIVAD 345 (371)
T ss_pred eEEecccEeccceEEec
Confidence 988 6889998888765
No 242
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.47 E-value=1.1e-06 Score=73.11 Aligned_cols=33 Identities=30% Similarity=0.286 Sum_probs=14.7
Q ss_pred eeEECCCCEECCCcEEE-eeEECCCCEECCCcEE
Q 015225 331 SCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARV 363 (411)
Q Consensus 331 ~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i 363 (411)
+++||++|.||.+|.|. ++.|++++.||+++.|
T Consensus 73 ~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V 106 (145)
T cd03349 73 DVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVV 106 (145)
T ss_pred CcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 34444444444444443 3444444444444333
No 243
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.45 E-value=4.5e-05 Score=74.76 Aligned_cols=186 Identities=14% Similarity=0.202 Sum_probs=114.7
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCccc-CCcchhHhHHHHhccC---CC--CcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL-AGQPMIQHPISACKRI---PN--LAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~---~g--i~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
.++.+|.|||| .||||+- .-||.++++ .|+++++..++++..+ .| +.=++..+....+..+++++++.
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 35779999999 9999987 889999999 5679988888877543 13 22233333344566788888742
Q ss_pred cCCcceEEeeCC------------------------CCCCChHHH---HH--HHHHhhccCCCeEEEEcCCccc-CCChH
Q 015225 76 ELKVPVRYLKED------------------------KPHGSAGGL---YY--FRDMIMEENPSHIILLNCDVCC-SFPLP 125 (411)
Q Consensus 76 ~~~~~i~~v~~~------------------------~~~g~~~~l---~~--~~~~i~~~~~~~~lv~~~D~i~-~~~l~ 125 (411)
..+.++.+..|. .+.|.++.. +. .++.+....-+++.+.+.|.+. ..| .
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vD-p 230 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVD-L 230 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccC-H
Confidence 223333332211 122334332 22 1344444446899999999974 333 3
Q ss_pred HHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHHhh
Q 015225 126 DLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTAIQ 196 (411)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~l~ 196 (411)
.++.++.+.+++.++=+++.. .....-|.+.. | ..-+++++.+-|.. ....+.+++.++|+-+.++.+.
T Consensus 231 ~~lg~~~~~~~e~~~ev~~Kt-~~d~kgG~l~~~d-gk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~ 308 (469)
T PLN02474 231 KILNHLIQNKNEYCMEVTPKT-LADVKGGTLISYE-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
T ss_pred HHHHHHHhcCCceEEEEeecC-CCCCCccEEEEEC-CEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHh
Confidence 467777778888766655431 11222355543 3 33357788775532 2356779999999998877664
No 244
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.36 E-value=8.6e-07 Score=76.16 Aligned_cols=78 Identities=27% Similarity=0.374 Sum_probs=41.0
Q ss_pred ECCCCEECCCCEEC--CCcEECCCcEECCCcEEEeeEECCCCEECC---CcEEEeeEECCCCEECCCcEEecCCcCCccc
Q 015225 299 IHPSAKVHPTAKIG--PNVSISANVRVGAGVRLISCIVLDDVEIKE---NAVVLNSIIGWKSSLGRWARVQGNGDYNAKL 373 (411)
Q Consensus 299 i~~~~~v~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~ 373 (411)
|+|.+.||.|-.+- -+++||+-++||+++.| .+++++|. +|--++-.||+++.||.++.|.++
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgn------- 218 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGN------- 218 (269)
T ss_pred ccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCC-------
Confidence 44444444443333 24566666666665555 44444432 222224466666666666666665
Q ss_pred ceeEECCCCEECCCcEE
Q 015225 374 GITILGEAVTVEDEVVV 390 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v 390 (411)
..||++++|++|++|
T Consensus 219 --V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 219 --VTIGEGAVIAAGSVV 233 (269)
T ss_pred --eeECCCcEEeccceE
Confidence 556666655555544
No 245
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.32 E-value=2.8e-06 Score=88.54 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=56.7
Q ss_pred cEECCCCEECCCCEECCC-cEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccce
Q 015225 297 VYIHPSAKVHPTAKIGPN-VSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGI 375 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~-~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~ 375 (411)
+.||+++.++....+..+ +.||++|.|+++|.|..-...++.. .+.+++||++|.||.++.+..+
T Consensus 598 a~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~-----~~~~v~IG~~~~IG~~a~V~~g--------- 663 (695)
T TIGR02353 598 VKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVM-----KSDTVTIGDGATLGPGAIVLYG--------- 663 (695)
T ss_pred CEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecccccccc-----ccCCeEECCCCEECCCCEECCC---------
Confidence 334444444333333222 5777777777777775422222221 2346778888888888888777
Q ss_pred eEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 376 TILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 376 ~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
+.||+++.|++++.+ ++..+.++++.-
T Consensus 664 ~~IGd~a~Ig~~SvV~~g~~vp~~s~~~ 691 (695)
T TIGR02353 664 VVMGEGSVLGPDSLVMKGEEVPAHTRWR 691 (695)
T ss_pred CEECCCCEECCCCEEcCCcccCCCCEEE
Confidence 888888888888777 566777777653
No 246
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.30 E-value=3.4e-06 Score=87.97 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=54.8
Q ss_pred CcEECCCCEECCCCE-ECCCcEECCCcEECCCcEEEeeEECCCCEECCCcE-EEeeEECCCCEECCCcEEecCCcCCccc
Q 015225 296 DVYIHPSAKVHPTAK-IGPNVSISANVRVGAGVRLISCIVLDDVEIKENAV-VLNSIIGWKSSLGRWARVQGNGDYNAKL 373 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~-i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~-i~~s~i~~~~~ig~~~~i~~~~~~~~~~ 373 (411)
++.||+++.|++... ..+.+.||+||.|+++|.+.+..+. .+.. ++..+||++|.||.+|.|..+
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~------~~~l~~g~i~IG~~~~IG~~s~I~~g------- 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAE------RGRLHTGPVTLGRDAFIGTRSTLDID------- 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCC------CCceeecCcEECCCcEECCCCEEcCC-------
Confidence 345555555554211 1356678888888888887653332 2222 234477777777777777666
Q ss_pred ceeEECCCCEECCCcEEc-ceEEcCCCEE
Q 015225 374 GITILGEAVTVEDEVVVI-NSIVLPNKVL 401 (411)
Q Consensus 374 ~~~~i~~~~~i~~~~~v~-~~~i~~~~~v 401 (411)
++||+++.|++++.|. +..|.++++.
T Consensus 179 --~~Igd~a~vgagS~V~~g~~v~~~~~~ 205 (695)
T TIGR02353 179 --TSIGDGAQLGHGSALQGGQSIPDGERW 205 (695)
T ss_pred --CEECCCCEECCCCEecCCcccCCCCEE
Confidence 7777777777777663 3445555554
No 247
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.30 E-value=1.4e-06 Score=69.86 Aligned_cols=103 Identities=23% Similarity=0.157 Sum_probs=68.9
Q ss_pred CcEECCCCEECCCCEECCCcEECCCcEECCCcEEE----eeEECCCCEECCCcEEEe--------------eEECCCCEE
Q 015225 296 DVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLI----SCIVLDDVEIKENAVVLN--------------SIIGWKSSL 357 (411)
Q Consensus 296 ~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------s~i~~~~~i 357 (411)
.+.|.|+++|...+.|++++.|+++|+|.+.+++. .-+||.|+.|++.++|.+ -+||.+.+.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 46788999999999999999999999999999986 689999999999998875 256665554
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEECCCcEE-cceEEcCCCEEc
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTVEDEVVV-INSIVLPNKVLN 402 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~i~~~~~v~ 402 (411)
.-+|....-.- -.+-+|+..|.+|+|+.+ .+|+||++..|-
T Consensus 88 eVgc~s~A~kv----Gd~NVieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 88 EVGCKSSAKKV----GDRNVIESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred Eeechhhhhhh----cCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence 44443222000 001344444444445444 355555555443
No 248
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.29 E-value=1.8e-06 Score=74.24 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=69.5
Q ss_pred CcEEcCCcEECCCCEECC--CCEECCCcEECCCcEECCCcEEE---------eeEECCCCEECCCcEEE-eeEECCCCEE
Q 015225 290 SATIAGDVYIHPSAKVHP--TAKIGPNVSISANVRVGAGVRLI---------SCIVLDDVEIKENAVVL-NSIIGWKSSL 357 (411)
Q Consensus 290 ~~~~~~~~~i~~~~~v~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~-~s~i~~~~~i 357 (411)
+..+++.+.||++-.+++ +++|+...+||.+|.|..++.++ +-.||+||.||.++.|- +..||++++|
T Consensus 148 gvdihpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavI 227 (269)
T KOG4750|consen 148 GVDIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVI 227 (269)
T ss_pred cccccchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEE
Confidence 445677777787777765 77777777888888887777776 35899999999988887 8888888888
Q ss_pred CCCcEEecCCcCCcccceeEECCCCEE
Q 015225 358 GRWARVQGNGDYNAKLGITILGEAVTV 384 (411)
Q Consensus 358 g~~~~i~~~~~~~~~~~~~~i~~~~~i 384 (411)
++++.+..+.+++. ..+|+-|++
T Consensus 228 aAGsvV~kDVP~~~----~AvGnPAkl 250 (269)
T KOG4750|consen 228 AAGSVVLKDVPPNT----LAVGNPAKL 250 (269)
T ss_pred eccceEEeccCCCc----eecCCchhh
Confidence 88888888766666 666666554
No 249
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.21 E-value=1.2e-05 Score=70.39 Aligned_cols=87 Identities=23% Similarity=0.220 Sum_probs=50.4
Q ss_pred CCcEECCCCEECCCCEE--CCCcEECCCcEECCCcEEEe-eEECCCCEECCCcE--EEeeEECCCCEECCCcEEecCCcC
Q 015225 295 GDVYIHPSAKVHPTAKI--GPNVSISANVRVGAGVRLIS-CIVLDDVEIKENAV--VLNSIIGWKSSLGRWARVQGNGDY 369 (411)
Q Consensus 295 ~~~~i~~~~~v~~~~~i--~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~--i~~s~i~~~~~ig~~~~i~~~~~~ 369 (411)
....+|+++.++.++.+ ..+..||+++.++++|.|.. +..++...-..+.. ...++||++|.||.++.|..|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpG--- 142 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPG--- 142 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCC---
Confidence 34556666666665553 24455666666666666642 22222222222211 224777777777777777776
Q ss_pred CcccceeEECCCCEECCCcEE
Q 015225 370 NAKLGITILGEAVTVEDEVVV 390 (411)
Q Consensus 370 ~~~~~~~~i~~~~~i~~~~~v 390 (411)
+.||+++.|++++++
T Consensus 143 ------V~IG~gavigagsVV 157 (190)
T COG0110 143 ------VTIGEGAVIGAGSVV 157 (190)
T ss_pred ------EEECCCcEEeeCCEE
Confidence 777777777777666
No 250
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.21 E-value=9e-06 Score=71.19 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=12.7
Q ss_pred cceEEcCCCEEcCCCCCcc
Q 015225 391 INSIVLPNKVLNVSVQEEI 409 (411)
Q Consensus 391 ~~~~i~~~~~v~~~~~~~~ 409 (411)
.+++|++|++|++++|+..
T Consensus 147 ~gavigagsVVtkdvp~~~ 165 (190)
T COG0110 147 EGAVIGAGSVVTKDVPPYG 165 (190)
T ss_pred CCcEEeeCCEEeCccCCCe
Confidence 4677777777777776653
No 251
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.10 E-value=0.00039 Score=64.72 Aligned_cols=186 Identities=15% Similarity=0.223 Sum_probs=114.9
Q ss_pred CCceEEEEEecCCCCCcccccCCCCCCccCccc-CCcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhc
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL-AGQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSIS 74 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~~~pK~llpi-~g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~ 74 (411)
+.++-+|+|||| .||||+- ..||.++|+ .++++++..++++... ..+.-++..+...++..++++++..
T Consensus 1 l~kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~ 75 (300)
T cd00897 1 LNKLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA 75 (300)
T ss_pred CCcEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC
Confidence 357889999999 9999976 889999999 4669999999987542 1233233334445577888988742
Q ss_pred ccCCcceEEeeC------------------------CCCCCChHHHHH-----HHHHhhccCCCeEEEEcCCccc-CCCh
Q 015225 75 NELKVPVRYLKE------------------------DKPHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCC-SFPL 124 (411)
Q Consensus 75 ~~~~~~i~~v~~------------------------~~~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~-~~~l 124 (411)
. .+..+.+..| -.+.|.++.... .++.+...+-+++.+.+.|.+. ..|
T Consensus 76 ~-~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~D- 153 (300)
T cd00897 76 G-VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVD- 153 (300)
T ss_pred C-CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCC-
Confidence 1 1112222111 012244433221 1333433446899999999975 333
Q ss_pred HHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEE-cCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHH
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIA-DPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTA 194 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~-d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~ 194 (411)
..++..+.++++++++=+.+. ..+ ..-|.+.. | ..-+|+++.+-|.. ....+.+++.++|+-+.++.
T Consensus 154 p~~lg~~~~~~~~~~~evv~K--t~~dek~G~l~~~~-g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~ 230 (300)
T cd00897 154 LRILNHMVDNKAEYIMEVTDK--TRADVKGGTLIQYE-GKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKR 230 (300)
T ss_pred HHHHHHHHhcCCceEEEEeec--CCCCCcccEEEEEC-CEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHH
Confidence 346777788888877644443 333 33455543 3 33467888776532 13456789999999887765
Q ss_pred hh
Q 015225 195 IQ 196 (411)
Q Consensus 195 l~ 196 (411)
+.
T Consensus 231 ~~ 232 (300)
T cd00897 231 VV 232 (300)
T ss_pred HH
Confidence 54
No 252
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.03 E-value=2.1e-05 Score=77.04 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred CeEEEEcCCcccCCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCCC---------ceeEEeccCCC-----
Q 015225 109 SHIILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNTK---------ELLHYTEKPET----- 174 (411)
Q Consensus 109 ~~~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~~---------~v~~~~e~~~~----- 174 (411)
.-++|..+|.++...-...+.. .+..+++++.+.+.+-.+..|++..| +++ .+.++..||..
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~-~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLIDW---DEPGVTALAHPSSLEYATNHGVFVLD-RQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCccccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeC-CCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 4579999994432111112221 22567778888766667888999999 566 67788777621
Q ss_pred ------cccCcccceEEEeCHHHHHHhhh
Q 015225 175 ------FVSDLINCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 175 ------~~~~~~~~Giyi~~~~~~~~l~~ 197 (411)
....+.++|++.|+.+..+.|-.
T Consensus 130 ~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CCcccCCCcccccccceeccHHHHHHHHH
Confidence 22345689999999987765544
No 253
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.00 E-value=8.9e-05 Score=78.66 Aligned_cols=209 Identities=13% Similarity=0.151 Sum_probs=116.1
Q ss_pred eEEEEcCCccc--CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEEcCCC--CceeEEeccCC--------Cccc
Q 015225 110 HIILLNCDVCC--SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIADPNT--KELLHYTEKPE--------TFVS 177 (411)
Q Consensus 110 ~~lv~~~D~i~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~--~~v~~~~e~~~--------~~~~ 177 (411)
.++|..||.+. +..+.+ -..++++......+.+-.+..|+++.| .+ +++..+..||. ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~-~~~~~~~~~~LqKps~eel~a~~~~~~ 226 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSS-RKSPERLDFMLQKPSLEELGGLSKTHL 226 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeC-CCChHHHHHHhcCCCHHHHHhhhcCCe
Confidence 79999999863 332322 133566666666554667889999988 44 67888888873 2335
Q ss_pred CcccceEEEeCHHHHHHhhhhh-hcccccccccccchhhhhhhcccCCCCceeeeccchhhccc----------CCCceE
Q 015225 178 DLINCGVYVFTPDFFTAIQGVL-THREDRANIRQVSSFEALQSATRTLPVDFVRLDQDILSPLA----------GKKQLY 246 (411)
Q Consensus 178 ~~~~~Giyi~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~----------~~~~v~ 246 (411)
.+.++|+|+|+....+.|.+.. .......++ +++..|+++.|- ++.++.
T Consensus 227 ~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~--------------------~dlY~Df~~aLg~~~~~~~~el~~l~~~ 286 (974)
T PRK13412 227 FLMDIGIWLLSDRAVELLMKRSGKEDGGKLKY--------------------YDLYSDFGLALGTHPRIGDDELNALSVA 286 (974)
T ss_pred EEEeeeEEEEChHHHHHHHHhhhcccCCccee--------------------eehHHHHHHhcCCCCCcchhhhcccceE
Confidence 6789999999998887776542 211111112 222233333322 223455
Q ss_pred EEeecc-eeeecCCccchhhcchHHHhhhhhcCccccccCCCCCCcEEcCCcEECCCCEECCCCEECCCcEECCCcEECC
Q 015225 247 TYETMD-FWEQIKTPGMSLKCSSLYLALFKITSPQLLASGNGITSATIAGDVYIHPSAKVHPTAKIGPNVSISANVRVGA 325 (411)
Q Consensus 247 ~~~~~~-~~~~I~t~~d~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~ 325 (411)
.+...+ .|+-+||-..|+.....+...... .+.++... +.+ .+.+.+. +++++.++.+++
T Consensus 287 i~~L~~~~F~H~GTs~E~l~~~~~~q~~~~~-~~~i~~~~-------------~~~----~~~~~v~-ns~~~~~~s~~~ 347 (974)
T PRK13412 287 ILPLPGGEFYHYGTSRELISSTLAVQNLVTD-QRRIMHRK-------------VKP----HPAMFVQ-NAVLSGKLTAEN 347 (974)
T ss_pred EEEcCCceeEEecCcHHHhcCchhHHHHhhh-hhhhhccc-------------cCC----CCceEEE-eeEecCCcccCC
Confidence 555554 677789988887654333222211 11111110 011 1112232 666666666666
Q ss_pred CcE-EEeeEECCCCEECCCcEEEeeE-ECCCCEECCCcEEe
Q 015225 326 GVR-LISCIVLDDVEIKENAVVLNSI-IGWKSSLGRWARVQ 364 (411)
Q Consensus 326 ~~~-i~~~~i~~~~~i~~~~~i~~s~-i~~~~~ig~~~~i~ 364 (411)
++. |.+|.|+.+.+||++|.|.++- ..-+..|-+++.+-
T Consensus 348 ~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~ 388 (974)
T PRK13412 348 ATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCID 388 (974)
T ss_pred CeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEE
Confidence 644 6667777777777777776653 22235555555443
No 254
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.99 E-value=3.6e-05 Score=66.67 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=78.3
Q ss_pred EcCCcEECCCCEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEE-eeEECCCCEECCCcEEecCCcCCc
Q 015225 293 IAGDVYIHPSAKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVL-NSIIGWKSSLGRWARVQGNGDYNA 371 (411)
Q Consensus 293 ~~~~~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~s~i~~~~~ig~~~~i~~~~~~~~ 371 (411)
..+++.||+++.+.- .++|+...+|+++.|..-+++.+++|+.+|.+. |.+...+.+||+++.|.+-
T Consensus 19 v~gdViIG~nS~l~~-------~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gk----- 86 (277)
T COG4801 19 VKGDVIIGKNSMLKY-------GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK----- 86 (277)
T ss_pred EeccEEEcccceeee-------eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeee-----
Confidence 345566666665543 478888999999999999999999999999998 8888999999999999885
Q ss_pred ccceeEECCCCEECCCcEEcceEEcCCCEEcCC
Q 015225 372 KLGITILGEAVTVEDEVVVINSIVLPNKVLNVS 404 (411)
Q Consensus 372 ~~~~~~i~~~~~i~~~~~v~~~~i~~~~~v~~~ 404 (411)
.++..+-.||+++.|++..+..|-++-.+
T Consensus 87 ----l~v~gdLdig~dV~Ieggfva~g~Ivirn 115 (277)
T COG4801 87 ----LTVIGDLDIGADVIIEGGFVAKGWIVIRN 115 (277)
T ss_pred ----EEEecccccccceEEecCeeecceEEEcC
Confidence 77777789999999988887777766553
No 255
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.006 Score=59.24 Aligned_cols=180 Identities=19% Similarity=0.301 Sum_probs=107.3
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhccc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISNE 76 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~~ 76 (411)
++.+|+|||| .|+||+- .-||.+++|. |+++++.+.+.++.+ ..+.-++... ...+....++... +.
T Consensus 105 klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS-~nt~~t~s~f~~~-~Y 177 (472)
T COG4284 105 KLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTS-LNTEETDSYFKSN-DY 177 (472)
T ss_pred ceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEec-CCcHHHHHHHhhh-hh
Confidence 5779999999 9999987 7899999999 889999888876653 1344445444 3333344454431 11
Q ss_pred CCc---ceEEeeC-----------------C------CCCCChH---HHHH--HHHHhhccCCCeEEEEcCCccc-CCCh
Q 015225 77 LKV---PVRYLKE-----------------D------KPHGSAG---GLYY--FRDMIMEENPSHIILLNCDVCC-SFPL 124 (411)
Q Consensus 77 ~~~---~i~~v~~-----------------~------~~~g~~~---~l~~--~~~~i~~~~~~~~lv~~~D~i~-~~~l 124 (411)
.+. +|.+..| + .+.|.++ +|+. ..+.+.+.+-+.+.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 111 1221111 0 0223333 4443 3444434456889999999963 5554
Q ss_pred HHHHHHHHhcCCeeEEEEEecCcccccceeEEE-EcCCCCceeEEeccCCC----------cccCccc-ceEEEeCHHHH
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI-ADPNTKELLHYTEKPET----------FVSDLIN-CGVYVFTPDFF 192 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~d~~~~~v~~~~e~~~~----------~~~~~~~-~Giyi~~~~~~ 192 (411)
.++.++...+.+.++=++... +....-|.++ .| ...+|+++.+-|.. ......+ .++++++-..+
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt-~a~ekvG~Lv~~~-g~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l 334 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKT-KADEKVGILVTYD-GKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFL 334 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecc-cccccceEEEEeC-CceEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHH
Confidence 456777778877666555531 2334456655 66 56789999886642 1123334 56677666554
No 256
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.80 E-value=1.4e-05 Score=49.35 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=15.3
Q ss_pred EECCCCEECCCCEECCCcEECCCcEECCCcEE
Q 015225 298 YIHPSAKVHPTAKIGPNVSISANVRVGAGVRL 329 (411)
Q Consensus 298 ~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i 329 (411)
.|+++++|++++.|.+++.||++|.|+++|.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 44445555555554445555555555544444
No 257
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.72 E-value=0.0015 Score=64.78 Aligned_cols=186 Identities=16% Similarity=0.295 Sum_probs=113.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC---CcchhHhHHHHhccC---------------CCCcEEEEecc-cch
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA---GQPMIQHPISACKRI---------------PNLAQIFLIGF-YEE 63 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~---g~pli~~~l~~l~~~---------------~gi~~I~Iv~~-~~~ 63 (411)
++-+|+|||| .||||+- ..||.|++|+ ++++++...+++... ..+. .+|-++ ...
T Consensus 116 kvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IP-l~IMTS~~T~ 189 (493)
T PLN02435 116 KLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIH-WYIMTSPFTD 189 (493)
T ss_pred CEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCcee-EEEeCCcchh
Confidence 5678899999 9999987 8899999885 889999998886431 0122 244444 456
Q ss_pred HHHHHHHhhhcccCCc---ceEEeeCC---------------------CCCCChHHHHH-----HHHHhhccCCCeEEEE
Q 015225 64 REFALYVSSISNELKV---PVRYLKED---------------------KPHGSAGGLYY-----FRDMIMEENPSHIILL 114 (411)
Q Consensus 64 ~~i~~~~~~~~~~~~~---~i~~v~~~---------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv~ 114 (411)
+..++++++. ..+|. .+.+..|. .+.|.++.... .++.+...+-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 7788999873 22332 34443221 13355544332 2334433446789999
Q ss_pred cCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcCCCC--ceeEEeccCCC-----------cccCc
Q 015225 115 NCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADPNTK--ELLHYTEKPET-----------FVSDL 179 (411)
Q Consensus 115 ~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~--~v~~~~e~~~~-----------~~~~~ 179 (411)
..|.+. ...-..++-.+...+.++.+-+.+. ..+ ..-|.+.....++ .|++|.|-+.. .....
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~ 346 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCW 346 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeec--CCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccch
Confidence 999964 3333456777777888866554432 223 3346665421234 47777664311 12356
Q ss_pred ccceEEEeCHHHHHHhhh
Q 015225 180 INCGVYVFTPDFFTAIQG 197 (411)
Q Consensus 180 ~~~Giyi~~~~~~~~l~~ 197 (411)
.+.+.++|+-++++.+.+
T Consensus 347 gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 347 SNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred hhHHHhhccHHHHHHHHH
Confidence 678889999999887754
No 258
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.71 E-value=4.3e-05 Score=46.28 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=2.5
Q ss_pred CCCcEECCC
Q 015225 318 SANVRVGAG 326 (411)
Q Consensus 318 g~~~~i~~~ 326 (411)
|++|.||++
T Consensus 5 G~~~~ig~~ 13 (34)
T PF14602_consen 5 GDNCFIGAN 13 (34)
T ss_dssp -TTEEE-TT
T ss_pred CCCEEECcc
Confidence 333333333
No 259
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.67 E-value=0.0036 Score=61.23 Aligned_cols=188 Identities=20% Similarity=0.260 Sum_probs=110.3
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhcc
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISN 75 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~ 75 (411)
.++.+|+|||| .||||+- ..||.+++|. ++++++..++++... ..+.=++......++..+++++++ .
T Consensus 55 ~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-f 128 (420)
T PF01704_consen 55 GKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-F 128 (420)
T ss_dssp TCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-C
T ss_pred CCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-c
Confidence 46788999999 9999986 8899999994 558888888877651 134434444455567888999884 2
Q ss_pred cCCcceEEeeC----------------CC----------CCCChHHHHH-----HHHHhhccCCCeEEEEcCCcccCCCh
Q 015225 76 ELKVPVRYLKE----------------DK----------PHGSAGGLYY-----FRDMIMEENPSHIILLNCDVCCSFPL 124 (411)
Q Consensus 76 ~~~~~i~~v~~----------------~~----------~~g~~~~l~~-----~~~~i~~~~~~~~lv~~~D~i~~~~l 124 (411)
..+.++.+..| .. +.|.++.... .++.+...+-+++.+.+.|.+....=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 22222322211 00 1245543322 23344334468999999999643322
Q ss_pred HHHHHHHHhcCCeeEEEEEecCcccc-cceeEEEEcCCCCceeEEeccCCC--------cccCcccceEEEeCHHHHHHh
Q 015225 125 PDLLEAHKRYGGMGTMLVIKVSAESA-HQFGELIADPNTKELLHYTEKPET--------FVSDLINCGVYVFTPDFFTAI 195 (411)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~v~~~~e~~~~--------~~~~~~~~Giyi~~~~~~~~l 195 (411)
..++..+.+.++++.+-+++. ..+ ..-|.+......-+|+++.+-|.. ....+.++|-.+|+-..++.+
T Consensus 209 p~~lG~~~~~~~~~~~evv~K--t~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPK--TSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE---CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhccchhheeeeec--CCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 456777778888876666654 233 334555433022356666654421 224556888889998888766
Q ss_pred hh
Q 015225 196 QG 197 (411)
Q Consensus 196 ~~ 197 (411)
.+
T Consensus 287 ~~ 288 (420)
T PF01704_consen 287 LE 288 (420)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 260
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.54 E-value=0.0016 Score=60.82 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=105.6
Q ss_pred EEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhccCC-------C--CcEEEEecc-cchHHHHHHHh
Q 015225 5 VAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKRIP-------N--LAQIFLIGF-YEEREFALYVS 71 (411)
Q Consensus 5 ~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~~-------g--i~~I~Iv~~-~~~~~i~~~~~ 71 (411)
-+|+|||| .||||+- .-||.++|+ .|++++++.++++.... + +. .+|-++ ..++..+++++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IP-l~IMTS~~Th~~T~~~fe 75 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIP-FVIMTSDDTHSKTLKLLE 75 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCcee-EEEECCCchhHHHHHHHH
Confidence 47899999 9999987 889999999 58899999999886530 1 22 344444 45677888988
Q ss_pred hhcccCCc---ceEEeeC-------------------C-----CCCCChHHHHHH-----HHHhhccCCCeEEEEcCCcc
Q 015225 72 SISNELKV---PVRYLKE-------------------D-----KPHGSAGGLYYF-----RDMIMEENPSHIILLNCDVC 119 (411)
Q Consensus 72 ~~~~~~~~---~i~~v~~-------------------~-----~~~g~~~~l~~~-----~~~i~~~~~~~~lv~~~D~i 119 (411)
+. ..+|. ++.+..| . .+.|.++..... ++.+...+-+++.+..-|.+
T Consensus 76 ~n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~ 154 (315)
T cd06424 76 EN-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNA 154 (315)
T ss_pred HC-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchh
Confidence 63 22221 2222211 0 133444433221 33343344578888888887
Q ss_pred c-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEEE-cCCCCc--e--eEEeccCC------------Cccc----
Q 015225 120 C-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELIA-DPNTKE--L--LHYTEKPE------------TFVS---- 177 (411)
Q Consensus 120 ~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~-d~~~~~--v--~~~~e~~~------------~~~~---- 177 (411)
. ......++-.+..+++++...+.+. .....-|.+.. +..+++ | ++|.|-+. ...+
T Consensus 155 L~~~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~ 232 (315)
T cd06424 155 LAFKAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSP 232 (315)
T ss_pred hhhccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccccccccc
Confidence 5 3334455555666777766554443 44456676653 212333 4 66655321 0011
Q ss_pred CcccceEEEeCHHHHH
Q 015225 178 DLINCGVYVFTPDFFT 193 (411)
Q Consensus 178 ~~~~~Giyi~~~~~~~ 193 (411)
...|++.++|+-+.+.
T Consensus 233 f~gNi~~~~f~l~~~~ 248 (315)
T cd06424 233 FPGNINQLVFSLGPYM 248 (315)
T ss_pred CCCeeeeEEEeHHHHH
Confidence 2568899999976543
No 261
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.48 E-value=0.00022 Score=43.16 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=13.1
Q ss_pred cEECCCCEECCCCEECCCcEECCCcEECCCcEE
Q 015225 297 VYIHPSAKVHPTAKIGPNVSISANVRVGAGVRL 329 (411)
Q Consensus 297 ~~i~~~~~v~~~~~i~~~~~ig~~~~i~~~~~i 329 (411)
+.||++++|++++.| ++.||++|.|++++.|
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 345555555555554 2555555555555444
No 262
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.47 E-value=0.00044 Score=60.08 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=56.6
Q ss_pred CcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcc
Q 015225 314 NVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVIN 392 (411)
Q Consensus 314 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 392 (411)
..+....+.||+++.+...++++...+|+++.|.+.+++.++.|+..|.+.++ +.++.++-||.++.|++
T Consensus 16 ~ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gN---------V~ve~dayiGE~~sI~g 85 (277)
T COG4801 16 IIVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN---------VIVENDAYIGEFSSIKG 85 (277)
T ss_pred eEEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeecc---------EEEcCceEEeccceeee
Confidence 34555566677777888888899999999999999999999999999988887 77788888888877744
No 263
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.93 E-value=0.034 Score=56.94 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=91.1
Q ss_pred CceEEEEEecCCCCCcccccCCCCCCccCccc---CCcchhHhHHHHhccC-------C-----CCcEEEEecc-cchHH
Q 015225 2 EKVVAVIMVGGPTKGTRFRPLSFNTPKPLFPL---AGQPMIQHPISACKRI-------P-----NLAQIFLIGF-YEERE 65 (411)
Q Consensus 2 ~~~~aiIla~G~~~g~rl~plt~~~pK~llpi---~g~pli~~~l~~l~~~-------~-----gi~~I~Iv~~-~~~~~ 65 (411)
.++.+|+|||| .|+||+- .-||.++|+ .|+++++..++.+... . .+. .+|-++ ..++.
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IP-l~IMTS~~T~~~ 200 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIP-LVIMTSDDTHAR 200 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCce-EEEECCcchhHH
Confidence 35778999999 9999976 779999997 4889999999987542 0 122 344444 44577
Q ss_pred HHHHHhhhcccCCc---ceEEeeCC------------------------CCCCChHHHHH-----HHHHhhccCCCeEEE
Q 015225 66 FALYVSSISNELKV---PVRYLKED------------------------KPHGSAGGLYY-----FRDMIMEENPSHIIL 113 (411)
Q Consensus 66 i~~~~~~~~~~~~~---~i~~v~~~------------------------~~~g~~~~l~~-----~~~~i~~~~~~~~lv 113 (411)
..+++++. ..+|. .+.+..|. .+.|.++.... .++.+...+-+++.+
T Consensus 201 T~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v 279 (615)
T PLN02830 201 TLKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVF 279 (615)
T ss_pred HHHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEE
Confidence 88888874 22322 23322211 12233332221 133443444678899
Q ss_pred EcCCccc-CCChHHHHHHHHhcCCeeEEEEEecCcccccceeEEE
Q 015225 114 LNCDVCC-SFPLPDLLEAHKRYGGMGTMLVIKVSAESAHQFGELI 157 (411)
Q Consensus 114 ~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 157 (411)
...|.+. ......++-.+...+.++.+-+.+. .....-|.+.
T Consensus 280 ~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K--~~~E~vGvi~ 322 (615)
T PLN02830 280 FQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR--KAKEAIGAIA 322 (615)
T ss_pred EeccchhhhcccHHHhHHHHhcCCceEEEEEEC--CCCcccceEE
Confidence 9999864 2333677888888888877766654 3334456554
No 264
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=96.19 E-value=0.015 Score=50.90 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=60.3
Q ss_pred cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEc
Q 015225 36 QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLN 115 (411)
Q Consensus 36 ~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~ 115 (411)
+|||+|+++.+... ++++++++++. +.+.++... ++ +.++.+.. .|...++..+.+.+.. ..+.++++.
T Consensus 30 ~~ll~~~l~~l~~~-~~~~vvvv~~~--~~~~~~~~~----~~--v~~i~~~~-~G~~~si~~al~~~~~-~~~~vlv~~ 98 (195)
T TIGR03552 30 LAMLRDVITALRGA-GAGAVLVVSPD--PALLEAARN----LG--APVLRDPG-PGLNNALNAALAEARE-PGGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCC--HHHHHHHHh----cC--CEEEecCC-CCHHHHHHHHHHHhhc-cCCeEEEEe
Confidence 68999999999996 77788888763 233444322 23 44555433 3899999999887642 235899999
Q ss_pred CCccc--CCChHHHHHHHH
Q 015225 116 CDVCC--SFPLPDLLEAHK 132 (411)
Q Consensus 116 ~D~i~--~~~l~~~l~~~~ 132 (411)
||+++ ...+..+++.+.
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 99985 556788877653
No 265
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.68 E-value=0.14 Score=41.55 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=62.3
Q ss_pred cchhHhHHHHhccCCC--CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEE
Q 015225 36 QPMIQHPISACKRIPN--LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIIL 113 (411)
Q Consensus 36 ~pli~~~l~~l~~~~g--i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv 113 (411)
.+++.++++.+.+. . ..+++|+.+...+...+.+.+..+. ...+.........|.+.++..+.+... .+.+++
T Consensus 9 ~~~l~~~l~s~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~---~d~v~~ 83 (156)
T cd00761 9 EPYLERCLESLLAQ-TYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAAR---GEYILF 83 (156)
T ss_pred HHHHHHHHHHHHhC-CccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhc---CCEEEE
Confidence 48999999999996 5 6678877766555556666553221 123444445566788888988888774 688999
Q ss_pred EcCCcccCCC-hHHHHHHH
Q 015225 114 LNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 114 ~~~D~i~~~~-l~~~l~~~ 131 (411)
+.+|.+...+ +..++..+
T Consensus 84 ~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 84 LDADDLLLPDWLERLVAEL 102 (156)
T ss_pred ECCCCccCccHHHHHHHHH
Confidence 9999987555 45543433
No 266
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.56 E-value=0.081 Score=44.04 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=72.9
Q ss_pred cccCCc-chhHhHHHHhccC-CCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRI-PNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~-~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. ..+..+|+.+.++ ....+|+|+-+...+...+.+++..+ .+..++++..+...|.+.++..+.+... .
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~---~ 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK---G 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH-----S
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc---e
Confidence 445455 6778888877764 23556666654443344555655433 4567888887766788899988888876 5
Q ss_pred CeEEEEcCCcccCCC-hHHHHHHHHhcCCeeEEEEEe
Q 015225 109 SHIILLNCDVCCSFP-LPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 109 ~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~~~~~~ 144 (411)
+.++++..|.....+ +..+++...+.+.++.+....
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 789999999987544 899999888877765544443
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.29 E-value=0.045 Score=53.85 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.1
Q ss_pred ECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECC
Q 015225 305 VHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGW 353 (411)
Q Consensus 305 v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~ 353 (411)
+.+++.|. ++++..++.+|++++|.+|.|+.++.||++|.|.++-+.+
T Consensus 276 ~~~~~~Vi-nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 276 SEASSCVI-NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred cCCCeeEE-EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 34444444 6777777777777777777777777777777776654443
No 268
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=93.38 E-value=1.4 Score=39.85 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=69.4
Q ss_pred ccCCCCCCc--cCcccCCc-chhHhHHHHhccCCCCc---EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCCh
Q 015225 20 RPLSFNTPK--PLFPLAGQ-PMIQHPISACKRIPNLA---QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSA 93 (411)
Q Consensus 20 ~plt~~~pK--~llpi~g~-pli~~~l~~l~~~~gi~---~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~ 93 (411)
.+.....|+ .++|.-|. ..+..+|+.+.++...+ +++|+.....+...+.+++.... .+.++......|-+
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~ 98 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKA 98 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChH
Confidence 344445555 56677666 67888888876642222 56666554444455555543221 36666666667888
Q ss_pred HHHHHHHHHhhccCCCeEEEEcCCcccCCC-hHHHHHHHHh
Q 015225 94 GGLYYFRDMIMEENPSHIILLNCDVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 94 ~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 133 (411)
.++..+.+... .+.++++.+|.+...+ +..+++...+
T Consensus 99 ~a~n~gi~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 99 AALNRALALAT---GEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHHHHcC---CCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 88888887765 5889999999987544 7888777643
No 269
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=92.49 E-value=1.5 Score=36.25 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=61.8
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. ..|..+|+.+.++. ..-+++|+-....+...+.+..........+.+.......|.+.++..+.+... .
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~---~ 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK---G 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC---C
Confidence 445454 67888888888752 134566664443433444444432222223455555566788888888888764 6
Q ss_pred CeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 109 SHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 109 ~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
+.++++.+|.....+ +..++..+.+.
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhccC
Confidence 889999999986444 67764554443
No 270
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.45 E-value=1.7 Score=37.65 Aligned_cols=99 Identities=8% Similarity=0.060 Sum_probs=63.4
Q ss_pred CcccCCcc---hhHhHHHHhccCCC-CcEEEEecccc-hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 30 LFPLAGQP---MIQHPISACKRIPN-LAQIFLIGFYE-EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 30 llpi~g~p---li~~~l~~l~~~~g-i~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
++|.-|.. .|..+|+.+..+.. ..+++||-... .+...+.+.++.++.+ ++++......|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35665553 78899999887621 24566553332 4445555555433333 666665555788888888877654
Q ss_pred ccCCCeEEEEcCCcccC-CChHHHHHHHHh
Q 015225 105 EENPSHIILLNCDVCCS-FPLPDLLEAHKR 133 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~-~~l~~~l~~~~~ 133 (411)
.+.++++.+|.... .-+..+++...+
T Consensus 81 ---gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 81 ---YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ---CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 57888999999864 447777776644
No 271
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.87 E-value=2.1 Score=35.39 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=63.4
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. .++..+++.+.... ...+++|+-....+...+.+.+.. ..+.++......|.+.++..+.+... .
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~~~---~ 75 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF----PEVRLIRNGENLGFGAGNNQGIREAK---G 75 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC----CCeEEEecCCCcChHHHhhHHHhhCC---C
Confidence 344444 78889999988752 234566665544444455554421 14666666666788999988888774 6
Q ss_pred CeEEEEcCCcccCC-ChHHHHHHHHhc
Q 015225 109 SHIILLNCDVCCSF-PLPDLLEAHKRY 134 (411)
Q Consensus 109 ~~~lv~~~D~i~~~-~l~~~l~~~~~~ 134 (411)
+.++++..|..... .+..+++.+.+.
T Consensus 76 ~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 76 DYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred CEEEEECCCcEECccHHHHHHHHHHhC
Confidence 88889999988644 477777665443
No 272
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=91.45 E-value=14 Score=35.73 Aligned_cols=135 Identities=17% Similarity=0.253 Sum_probs=74.0
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccC-CcchhHhHHHHhccC---CC--CcEEEEecccchHHHHHHHhhhccc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLA-GQPMIQHPISACKRI---PN--LAQIFLIGFYEEREFALYVSSISNE 76 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~-g~pli~~~l~~l~~~---~g--i~~I~Iv~~~~~~~i~~~~~~~~~~ 76 (411)
++..+=|-|| .|+-|+= .-||.++++. |.++++-++.+...+ -+ +.=|+...-.-.+..+++++++..
T Consensus 103 KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~- 176 (498)
T KOG2638|consen 103 KLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG- 176 (498)
T ss_pred heEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC-
Confidence 4567778999 9999976 7799999995 558777666554432 12 222333333444566777777521
Q ss_pred CCcceE--------------EeeC----------CC-CCCChH---HHHH--HHHHhhccCCCeEEEEcCCccc-CCChH
Q 015225 77 LKVPVR--------------YLKE----------DK-PHGSAG---GLYY--FRDMIMEENPSHIILLNCDVCC-SFPLP 125 (411)
Q Consensus 77 ~~~~i~--------------~v~~----------~~-~~g~~~---~l~~--~~~~i~~~~~~~~lv~~~D~i~-~~~l~ 125 (411)
..+++. .++. .+ +-|.++ +++. .++.+-....+.++|.+.|.+. ..||.
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ 256 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN 256 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH
Confidence 111111 0100 00 123332 3322 1222222346899999999995 56654
Q ss_pred HHHHHHHhcCCeeEEEEEe
Q 015225 126 DLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~ 144 (411)
++++..+....-.|=+++
T Consensus 257 -ILn~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 257 -ILNHVINNNIEYLMEVTD 274 (498)
T ss_pred -HHHHHhcCCCceEEEecc
Confidence 355555555554444444
No 273
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=91.31 E-value=1 Score=39.63 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=62.9
Q ss_pred ccCCc-chhHhHHHHhccC-----CCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhc
Q 015225 32 PLAGQ-PMIQHPISACKRI-----PNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIME 105 (411)
Q Consensus 32 pi~g~-pli~~~l~~l~~~-----~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~ 105 (411)
|.-|. ..|...++.+.+. ...-+|+|+-+...+...+.+++.....+..+.++......|-++++..+.+...
T Consensus 4 p~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~- 82 (211)
T cd04188 4 PAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR- 82 (211)
T ss_pred cccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc-
Confidence 44343 4455555555432 0134566664433333444444432333333566665566788999988888765
Q ss_pred cCCCeEEEEcCCcccC-CChHHHHHHHHhcCCeeEEE
Q 015225 106 ENPSHIILLNCDVCCS-FPLPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 106 ~~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~~~ 141 (411)
.+.++++.+|...+ ..+..+++...+.+.++++.
T Consensus 83 --gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 83 --GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred --CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 58899999999864 44788777755555554443
No 274
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=90.29 E-value=3.2 Score=37.30 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=61.6
Q ss_pred cccCCc-chhHhHHHHhccCCCC---cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhcc
Q 015225 31 FPLAGQ-PMIQHPISACKRIPNL---AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEE 106 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~gi---~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~ 106 (411)
+|.-|. -.|..+|+.+..+.-- -+|+||.....+...+.+++.......++..+......|-+.++..+.+...
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~-- 84 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFAR-- 84 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcC--
Confidence 344443 4566777777664111 1355554433344445555432111234455444444577888888888654
Q ss_pred CCCeEEEEcCCcccCCC-hHHHHHHHHhcCCeeEEE
Q 015225 107 NPSHIILLNCDVCCSFP-LPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 107 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~~~ 141 (411)
.+.++++.+|.....+ +..+++.+.+.+.++.++
T Consensus 85 -gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 85 -GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred -CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 5888899999987544 778887776443454333
No 275
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=89.47 E-value=3.2 Score=35.23 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=64.5
Q ss_pred ccCCc-chhHhHHHHhccCC---CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 32 PLAGQ-PMIQHPISACKRIP---NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 32 pi~g~-pli~~~l~~l~~~~---gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
|..+. ..+..+|+.+.+.. ...+|+|+-+...+...+.+++...+++ .+.++......|-+.++..+.+...
T Consensus 4 ~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~--- 79 (185)
T cd04179 4 PAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAAR--- 79 (185)
T ss_pred cccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhc---
Confidence 33344 45666777776652 2566777654433334444544322222 3456666666788899888888765
Q ss_pred CCeEEEEcCCcccC-CChHHHHHHHHhcCCeeEEE
Q 015225 108 PSHIILLNCDVCCS-FPLPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 108 ~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~~~ 141 (411)
.+.++++.+|.... .-+..++....+.+.++++.
T Consensus 80 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 80 GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 48899999998764 34777887655555554433
No 276
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=88.14 E-value=7.7 Score=34.30 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=59.6
Q ss_pred cccCCc--chhHhHHHHhccCCCCc---EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCC-CChHHHHHHHHHhh
Q 015225 31 FPLAGQ--PMIQHPISACKRIPNLA---QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPH-GSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~--pli~~~l~~l~~~~gi~---~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~-g~~~~l~~~~~~i~ 104 (411)
+|.-|. .++...|+.+.....-. +|+|+-+...+...+.+.....+. .+.++...... +.++++..+.+...
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~ 84 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTT 84 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCC
Confidence 455554 36788888887753233 577776555555666666543222 33444333333 34566667777554
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHh
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 133 (411)
.+.++++.+|...+.+ +..+++...+
T Consensus 85 ---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 85 ---GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred ---CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 5889999999987544 7777776654
No 277
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.03 E-value=4.1 Score=35.41 Aligned_cols=99 Identities=8% Similarity=-0.001 Sum_probs=59.3
Q ss_pred cccCCc-chhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. ..|...|+.+..... --+|+|+-....+...+.++....+.+..+.+.......|.+.++..+..... .
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~---g 80 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD---G 80 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC---C
Confidence 444444 477888888776521 12455554333333344444433333334566666666788888877766543 5
Q ss_pred CeEEEEcCCcccC-CChHHHHHHHH
Q 015225 109 SHIILLNCDVCCS-FPLPDLLEAHK 132 (411)
Q Consensus 109 ~~~lv~~~D~i~~-~~l~~~l~~~~ 132 (411)
+.++++..|.... ..+..+++...
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHHHh
Confidence 8889999998764 44788877633
No 278
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=87.99 E-value=3.5 Score=36.29 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=62.6
Q ss_pred cccCCc-chhHhHHHHhccCC--CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP--NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~--gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
+|.-|. ..|..+|+.+.+.. ..-+|+||-+...+...+.+++..+.. ..+.++......|-+.++..+.+...
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~-~~i~~~~~~~n~G~~~a~n~g~~~a~--- 78 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEY-PRVRLIVRPGKRGLGSAYIEGFKAAR--- 78 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhC-CceEEEecCCCCChHHHHHHHHHHcC---
Confidence 344444 45777777776642 134566664433333344444332222 23455555566788888888888765
Q ss_pred CCeEEEEcCCcccC-CChHHHHHHHHhcCCeeE
Q 015225 108 PSHIILLNCDVCCS-FPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 108 ~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~ 139 (411)
.+.++++.+|.... ..+..+++...+.+.+++
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 47888999998764 347777776555555543
No 279
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.94 E-value=5.1 Score=34.67 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred cchhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 36 QPMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 36 ~pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
...|..+|+.+.+... ..+|+|+-+...+...+.+.+.....+ +.++......|.+.++..+++.......+.++++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~l 86 (202)
T cd04185 9 LDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLM 86 (202)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECccccchhhHHHHHHHHHhccCCCEEEEe
Confidence 3578888888877522 235776654444455566665432222 5666555566777777776665432235788899
Q ss_pred cCCcccCCC-hHHHHHHHH
Q 015225 115 NCDVCCSFP-LPDLLEAHK 132 (411)
Q Consensus 115 ~~D~i~~~~-l~~~l~~~~ 132 (411)
..|...+.+ +..+++...
T Consensus 87 d~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 87 DDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCCcChHHHHHHHHHHh
Confidence 999987544 667666654
No 280
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=87.74 E-value=5.8 Score=37.06 Aligned_cols=104 Identities=11% Similarity=0.061 Sum_probs=63.7
Q ss_pred cccCCc--chhHhHHHHhccCCC---CcEEEEecccchHHHHHHHhh-hcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 31 FPLAGQ--PMIQHPISACKRIPN---LAQIFLIGFYEEREFALYVSS-ISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~--pli~~~l~~l~~~~g---i~~I~Iv~~~~~~~i~~~~~~-~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
+|.-|. ..+..+|+.+..... ..+|+||-+...+...+.+.+ ........++++..+...|-+.+.-.+++.-.
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~ 83 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAAT 83 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHcc
Confidence 344444 377888888775422 137777754333323333322 11223345777776666788888877777654
Q ss_pred ccCCCeEEEEcCCcccC-CChHHHHHHHHhcCCe
Q 015225 105 EENPSHIILLNCDVCCS-FPLPDLLEAHKRYGGM 137 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~ 137 (411)
.+.++++.+|+... .-|..+++...+....
T Consensus 84 ---gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 84 ---GDVLVFLDSHCEVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred ---CCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence 58899999999864 4488888877655443
No 281
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=86.86 E-value=7 Score=35.18 Aligned_cols=84 Identities=8% Similarity=0.048 Sum_probs=51.4
Q ss_pred EEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccC-CChHHHHHHH
Q 015225 54 QIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCS-FPLPDLLEAH 131 (411)
Q Consensus 54 ~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~-~~l~~~l~~~ 131 (411)
+|+|+-....+...+.+++..+.++ ..+.++......|-+.++..+.+... .+.++++.+|...+ ..+..+++..
T Consensus 42 eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~ 118 (243)
T PLN02726 42 EIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQ 118 (243)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHH
Confidence 5666644333333444444322222 24555554555677888887777654 57888999999864 4477888876
Q ss_pred HhcCCeeEE
Q 015225 132 KRYGGMGTM 140 (411)
Q Consensus 132 ~~~~~~~~~ 140 (411)
.+.+.+++.
T Consensus 119 ~~~~~~~v~ 127 (243)
T PLN02726 119 RETGADIVT 127 (243)
T ss_pred HhcCCcEEE
Confidence 666666543
No 282
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=86.73 E-value=6 Score=37.65 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=56.1
Q ss_pred hhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCC
Q 015225 38 MIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCD 117 (411)
Q Consensus 38 li~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D 117 (411)
+++.+.+.+.+...--+|+++-....+...+.+++..++.+.++..+......|-+.++..+.+.-. .+.++++.+|
T Consensus 24 ~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~---gd~vv~~DaD 100 (325)
T PRK10714 24 LIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVT---GDLIITLDAD 100 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCC---CCEEEEECCC
Confidence 3444444444431123566664433333344444322223445554444445688889988877654 5788899999
Q ss_pred ccc-CCChHHHHHHHHhcCCeeE
Q 015225 118 VCC-SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 118 ~i~-~~~l~~~l~~~~~~~~~~~ 139 (411)
.-. +..+..+++... .+.+++
T Consensus 101 ~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 101 LQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCCCHHHHHHHHHHHH-hhCCEE
Confidence 986 456888888764 456643
No 283
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.67 E-value=7.1 Score=34.28 Aligned_cols=104 Identities=7% Similarity=0.020 Sum_probs=58.1
Q ss_pred cccCCc-chhHhHHHHhccCCCC---cEEEEecccchHHHHHHHhhhcccCCcceEEeeCC--CCCCChHHHHHHHHHhh
Q 015225 31 FPLAGQ-PMIQHPISACKRIPNL---AQIFLIGFYEEREFALYVSSISNELKVPVRYLKED--KPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~gi---~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~--~~~g~~~~l~~~~~~i~ 104 (411)
+|..|. ..|..+|+.+..+..- -+|+|+-....+...+.+.......+..+.++... ...|...++..+.+...
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 444444 5678888887664222 25666544333333344430001223455655543 23455666666666543
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHhcCCe
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKRYGGM 137 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 137 (411)
.+.++++.+|.+...+ +..+++.+.+.+..
T Consensus 83 ---~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 83 ---GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred ---CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 5889999999987444 77777766554443
No 284
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=86.66 E-value=18 Score=33.22 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=60.3
Q ss_pred chhHhHHHHhccCCCCcEEEEeccc--chHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFY--EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~--~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..+...++.+.+. ..+|+||=+. ..+.+.+.+.+ ...+.++...+..|-+++...+++.......+.++++
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~l 80 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLL 80 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEE
Confidence 4677788888875 4567776443 22334443332 1357777777778999999888877632335899999
Q ss_pred cCCcccCC-ChHHHHHHHHhc
Q 015225 115 NCDVCCSF-PLPDLLEAHKRY 134 (411)
Q Consensus 115 ~~D~i~~~-~l~~~l~~~~~~ 134 (411)
..|..... .+..+++...+.
T Consensus 81 D~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 81 DQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 99998744 467777766544
No 285
>PRK11204 N-glycosyltransferase; Provisional
Probab=86.43 E-value=6.6 Score=38.73 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=64.4
Q ss_pred CcccCCc-chhHhHHHHhccCCCC-cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 30 LFPLAGQ-PMIQHPISACKRIPNL-AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 30 llpi~g~-pli~~~l~~l~~~~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
++|.-|. ..|..+++.+.+.... -+|+|+.....+...+.+++..++. .++.++...+..|-++++..+.+...
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~--- 134 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAAR--- 134 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcC---
Confidence 5566565 6888899888765222 2566665433333444444432222 24667765555678888888877654
Q ss_pred CCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 108 PSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 108 ~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|...+.+ +..+++...+.
T Consensus 135 ~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 135 SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 5889999999986544 78888776543
No 286
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.01 E-value=7.1 Score=34.82 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=58.9
Q ss_pred chhHhHHHHhccCCCC----cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEE
Q 015225 37 PMIQHPISACKRIPNL----AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHII 112 (411)
Q Consensus 37 pli~~~l~~l~~~~gi----~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~l 112 (411)
+.+..+++.+.+. .. -+|+|+-+...+...+.++....+ ...+.++... ..|.+.++..+.+... .+.++
T Consensus 13 ~~l~~~l~sl~~q-~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~---~d~v~ 86 (249)
T cd02525 13 KYIEELLESLLNQ-SYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSR---GDIII 86 (249)
T ss_pred hhHHHHHHHHHhc-cCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhC---CCEEE
Confidence 5677888888764 22 256666544444445555543222 2245655533 3466777777777654 58899
Q ss_pred EEcCCcccCC-ChHHHHHHHHhcCCee
Q 015225 113 LLNCDVCCSF-PLPDLLEAHKRYGGMG 138 (411)
Q Consensus 113 v~~~D~i~~~-~l~~~l~~~~~~~~~~ 138 (411)
++.+|..... -+..+++...+.+.++
T Consensus 87 ~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 87 RVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred EECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 9999998644 4788887665555443
No 287
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=85.30 E-value=12 Score=32.30 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=50.5
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCCCh---HHHHHHHHHhh
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHGSA---GGLYYFRDMIM 104 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g~~---~~l~~~~~~i~ 104 (411)
+|.-|. +.|...|+.+.++. .--+|+||.....+...+.+++....++ .++.++......|.. .++..+.+...
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~ 86 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEAR 86 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCC
Confidence 344433 46677777776641 1134555544333333344443222222 345555443333432 34444454433
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHH
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~ 131 (411)
.+.++++.+|...+.+ +..+++..
T Consensus 87 ---~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 87 ---YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred ---CCEEEEECCCceEChhHHHHHHHHh
Confidence 5888899999986444 67776654
No 288
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=85.08 E-value=11 Score=31.98 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=50.8
Q ss_pred cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCC-ChHHHHHHH
Q 015225 53 AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSF-PLPDLLEAH 131 (411)
Q Consensus 53 ~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~-~l~~~l~~~ 131 (411)
-+|+|+-+...+...+.+++...+. ..+.++......|.+.++..+.+... .+.++++.+|...+. .+..+++.
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~-~~i~~i~~~~n~G~~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~- 104 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARD-PRVKVIRLSRNFGQQAALLAGLDHAR---GDAVITMDADLQDPPELIPEMLAK- 104 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhC-CCEEEEEecCCCCcHHHHHHHHHhcC---CCEEEEEeCCCCCCHHHHHHHHHH-
Confidence 3566664433333344444432222 24666665556788899988877665 588999999998744 47777776
Q ss_pred HhcCCeeEE
Q 015225 132 KRYGGMGTM 140 (411)
Q Consensus 132 ~~~~~~~~~ 140 (411)
.+.+.++++
T Consensus 105 ~~~~~~~v~ 113 (181)
T cd04187 105 WEEGYDVVY 113 (181)
T ss_pred HhCCCcEEE
Confidence 444555433
No 289
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=84.38 E-value=10 Score=32.66 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=62.7
Q ss_pred CcchhHhHHHHhccCCCCcE-EEEecccc---hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCe
Q 015225 35 GQPMIQHPISACKRIPNLAQ-IFLIGFYE---EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSH 110 (411)
Q Consensus 35 g~pli~~~l~~l~~~~gi~~-I~Iv~~~~---~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~ 110 (411)
|-|++-|.+.......+.+- |++|-... ...+.+.+++.. .+.++.+.+.....|.+.|..+++.+-. .+.
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--g~d~i~l~pR~~klGLgtAy~hgl~~a~---g~f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--GEDNILLKPRTKKLGLGTAYIHGLKHAT---GDF 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--CCCcEEEEeccCcccchHHHHhhhhhcc---CCe
Confidence 44677777776555335544 44442222 223333343321 1236666666667899999998888765 355
Q ss_pred EEEEcCCccc-CCChHHHHHHHHhcCCeeEEEE
Q 015225 111 IILLNCDVCC-SFPLPDLLEAHKRYGGMGTMLV 142 (411)
Q Consensus 111 ~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~~~~ 142 (411)
++++.+|.-- +.-+.++++...+.+.+.++.+
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 6677888864 5568889988777777755443
No 290
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=84.16 E-value=2.1 Score=46.44 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.4
Q ss_pred CcEEEeeEECCCCEECCCcE-EEeeEECCCCEECCCcEEecCCcCCcccceeE-ECCCCEECCCcEEcceEEcCCCEE
Q 015225 326 GVRLISCIVLDDVEIKENAV-VLNSIIGWKSSLGRWARVQGNGDYNAKLGITI-LGEAVTVEDEVVVINSIVLPNKVL 401 (411)
Q Consensus 326 ~~~i~~~~i~~~~~i~~~~~-i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~-i~~~~~i~~~~~v~~~~i~~~~~v 401 (411)
.+.+.||++..++.+++++. |++|.|+.++.||+++.|.+ +- ...+..|++++.|..--++....|
T Consensus 331 ~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg----------v~~~~~~~~vP~~~ci~~vpl~~~~~v 398 (974)
T PRK13412 331 AMFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG----------VPENSWNLDLPEGVCIDVVPVGDRGFV 398 (974)
T ss_pred ceEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec----------ccccccceecCCCcEEEEEEcCCCcEE
Confidence 45788999999999999854 88999999999999999987 33 333577777776643333444333
No 291
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.84 E-value=11 Score=33.48 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=59.1
Q ss_pred CcccCCc-c-hhHhHHHHhccCCC-CcEEEEecccch-HHHHHHHhhhcccCCcceEEeeCCCCCCC-hHHHHHHHHHhh
Q 015225 30 LFPLAGQ-P-MIQHPISACKRIPN-LAQIFLIGFYEE-REFALYVSSISNELKVPVRYLKEDKPHGS-AGGLYYFRDMIM 104 (411)
Q Consensus 30 llpi~g~-p-li~~~l~~l~~~~g-i~~I~Iv~~~~~-~~i~~~~~~~~~~~~~~i~~v~~~~~~g~-~~~l~~~~~~i~ 104 (411)
++|.-|. + ++..+++.+..... .-+|+|+-+... ....+.+++..++.+.++.++......|. ++++..+.+...
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~ 82 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTA 82 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcC
Confidence 3456665 3 78888888887621 135666544322 22222222222223445666655444564 777877777653
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHH
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHK 132 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~ 132 (411)
. ..+.++++.+|...+.+ +..++....
T Consensus 83 ~-~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 83 P-DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred C-CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 1 14789999999986444 788877664
No 292
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.22 E-value=11 Score=32.09 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=55.0
Q ss_pred chhHhHHHHhccCCCCc--EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPNLA--QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~--~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..+..+|+.+.+. ... +|+|+-+...+...+.+++.... .+.+. .....|.+.++..+++... .+.++++
T Consensus 11 ~~l~~~l~sl~~q-~~~~~evivvDd~s~d~~~~~~~~~~~~---~~~~~-~~~~~g~~~a~n~~~~~a~---~~~v~~l 82 (202)
T cd06433 11 ETLEETIDSVLSQ-TYPNIEYIVIDGGSTDGTVDIIKKYEDK---ITYWI-SEPDKGIYDAMNKGIALAT---GDIIGFL 82 (202)
T ss_pred HHHHHHHHHHHhC-CCCCceEEEEeCCCCccHHHHHHHhHhh---cEEEE-ecCCcCHHHHHHHHHHHcC---CCEEEEe
Confidence 5788888888765 344 46666433333444555543211 23333 3445678888888877664 5888899
Q ss_pred cCCccc-CCChHHHHHHHHhc
Q 015225 115 NCDVCC-SFPLPDLLEAHKRY 134 (411)
Q Consensus 115 ~~D~i~-~~~l~~~l~~~~~~ 134 (411)
.+|... +..+..+++...+.
T Consensus 83 d~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 83 NSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCCcccCchHHHHHHHHHHhC
Confidence 999976 55577777444333
No 293
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=81.85 E-value=27 Score=29.58 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=57.7
Q ss_pred cccCCc-chhHhHHHHhccCCC---CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh--
Q 015225 31 FPLAGQ-PMIQHPISACKRIPN---LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM-- 104 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~g---i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~-- 104 (411)
+|.-|. ..|..+|+.+.+... .-+|+|+.....+...+.++. ++..+.........|-+.++..+.....
T Consensus 3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~----~~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA----AGATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH----cCCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444 577788888776421 134666654444444454443 2333333333334577788877776652
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHh
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~ 133 (411)
....+.++++.+|...+.+ +..+++.+.+
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1225789999999987544 6777776643
No 294
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.58 E-value=13 Score=31.84 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=54.9
Q ss_pred chhHhHHHHhccCCC-CcEEEEecccc-hHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEE
Q 015225 37 PMIQHPISACKRIPN-LAQIFLIGFYE-EREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILL 114 (411)
Q Consensus 37 pli~~~l~~l~~~~g-i~~I~Iv~~~~-~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~ 114 (411)
..+..+|+.+.+... .-+|+|+-... .......++..... ...+.++......|.+.++..+.+... .+.++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~---~d~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELAT---GEFVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhc---CCEEEEE
Confidence 667778888776421 12566553322 22334444432111 224666655556678888887777654 5788899
Q ss_pred cCCcccCCC-hHHHHHHH
Q 015225 115 NCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 115 ~~D~i~~~~-l~~~l~~~ 131 (411)
.+|.....+ +..+++.+
T Consensus 91 d~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 91 DHDDELAPHALYEVVKAL 108 (202)
T ss_pred CCCCcCChHHHHHHHHHH
Confidence 999976544 78888776
No 295
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=81.51 E-value=11 Score=37.64 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=62.2
Q ss_pred cCcccCCc-chhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhcc
Q 015225 29 PLFPLAGQ-PMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEE 106 (411)
Q Consensus 29 ~llpi~g~-pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~ 106 (411)
.++|.-|. ..+..+++.+.+... --+|+|+.....+...+.+++...+. .+++++......|-++++..+...-.
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~~~~n~Gka~AlN~gl~~a~-- 155 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-PRLRVIHLAHNQGKAIALRMGAAAAR-- 155 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEEeCCCCCHHHHHHHHHHhCC--
Confidence 56677776 668888888776511 12566664433333334444322222 24565554445577788877776543
Q ss_pred CCCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 107 NPSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 107 ~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|.+.+.+ +..+++.+.+.
T Consensus 156 -~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 156 -SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred -CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 5889999999987554 77777766543
No 296
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=81.45 E-value=16 Score=36.39 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=61.0
Q ss_pred cCcccCCc-chhHhHHHHhccCCCCc---EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhh
Q 015225 29 PLFPLAGQ-PMIQHPISACKRIPNLA---QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIM 104 (411)
Q Consensus 29 ~llpi~g~-pli~~~l~~l~~~~gi~---~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~ 104 (411)
.++|.-|. ..+..+++.+.++.... +|+|+-+...+...+.+++..+..+ .+.+...+...|-+.++..+.+...
T Consensus 53 VIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~-~v~v~~~~~~~Gka~AlN~gl~~s~ 131 (439)
T TIGR03111 53 IIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP-GLSLRYMNSDQGKAKALNAAIYNSI 131 (439)
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC-CeEEEEeCCCCCHHHHHHHHHHHcc
Confidence 34555555 78888888887652111 4666644434444444443322222 2333222334677888888887654
Q ss_pred ccCCCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 105 EENPSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 105 ~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+.++++.+|...+.+ +..+++.+.+.
T Consensus 132 ---g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 132 ---GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred ---CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 5788899999987554 78888776543
No 297
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=81.27 E-value=6.2 Score=30.25 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=9.6
Q ss_pred CCEECCCcEEEeeEECCCCEE
Q 015225 337 DVEIKENAVVLNSIIGWKSSL 357 (411)
Q Consensus 337 ~~~i~~~~~i~~s~i~~~~~i 357 (411)
...|+.++.|.+.+-.+.+.|
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEE
Confidence 444555555544444444433
No 298
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=80.46 E-value=13 Score=36.00 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=58.0
Q ss_pred cCcccCCc-chhHhHHHHhccCCCC-cEEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCCCh---HHHHHHHHH
Q 015225 29 PLFPLAGQ-PMIQHPISACKRIPNL-AQIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHGSA---GGLYYFRDM 102 (411)
Q Consensus 29 ~llpi~g~-pli~~~l~~l~~~~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g~~---~~l~~~~~~ 102 (411)
-++|.-|. +.|...|+.+.++... -+|+++.....+...+.+++..++++ .+++++......|.. .++..+.+.
T Consensus 45 ViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~ 124 (373)
T TIGR03472 45 VLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPH 124 (373)
T ss_pred EEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHh
Confidence 36677666 8889999998775211 24555443333332334433222232 356666544444443 344433333
Q ss_pred hhccCCCeEEEEcCCcccCCC-hHHHHHHHHhcC
Q 015225 103 IMEENPSHIILLNCDVCCSFP-LPDLLEAHKRYG 135 (411)
Q Consensus 103 i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~ 135 (411)
- ..+.++++.+|.....+ ++.++....+.+
T Consensus 125 a---~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 125 A---RHDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred c---cCCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 3 25889999999987554 777776664333
No 299
>PRK10073 putative glycosyl transferase; Provisional
Probab=79.56 E-value=17 Score=34.56 Aligned_cols=103 Identities=9% Similarity=-0.026 Sum_probs=61.8
Q ss_pred cccCCc-chhHhHHHHhccCCCCc--EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccC
Q 015225 31 FPLAGQ-PMIQHPISACKRIPNLA--QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~gi~--~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~ 107 (411)
+|.-|. ..|...|+.+..+ ... +|+||-....+...+.++++.++ ...+.++.+. ..|.+.+.-.+++...
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Q-t~~~~EIIiVdDgStD~t~~i~~~~~~~-~~~i~vi~~~-n~G~~~arN~gl~~a~--- 85 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQ-TWTALEIIIVNDGSTDNSVEIAKHYAEN-YPHVRLLHQA-NAGVSVARNTGLAVAT--- 85 (328)
T ss_pred EeccCCHHHHHHHHHHHHhC-CCCCeEEEEEeCCCCccHHHHHHHHHhh-CCCEEEEECC-CCChHHHHHHHHHhCC---
Confidence 444343 5778888888765 222 45555333233333344432222 2356666543 4678888877777665
Q ss_pred CCeEEEEcCCccc-CCChHHHHHHHHhcCCeeE
Q 015225 108 PSHIILLNCDVCC-SFPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 108 ~~~~lv~~~D~i~-~~~l~~~l~~~~~~~~~~~ 139 (411)
.+.++++.+|... +..+..+++...+.+.+++
T Consensus 86 g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv 118 (328)
T PRK10073 86 GKYVAFPDADDVVYPTMYETLMTMALEDDLDVA 118 (328)
T ss_pred CCEEEEECCCCccChhHHHHHHHHHHhCCCCEE
Confidence 5888899999986 4447778877666666643
No 300
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.51 E-value=14 Score=31.12 Aligned_cols=98 Identities=8% Similarity=0.051 Sum_probs=55.9
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeC-CCCCCChHHHHHHHHHhhccC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKE-DKPHGSAGGLYYFRDMIMEEN 107 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~-~~~~g~~~~l~~~~~~i~~~~ 107 (411)
+|.-|. ..+..+|+.+.++. ..-+|+|+-....+...+.+++.....+.++..+.. ....+.+.++..+.+...
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~--- 79 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK--- 79 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc---
Confidence 344444 57788888887642 223566665544444455555533322333433332 223345566666666554
Q ss_pred CCeEEEEcCCcccCCC-hHHHHHHH
Q 015225 108 PSHIILLNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 108 ~~~~lv~~~D~i~~~~-l~~~l~~~ 131 (411)
.+.++++.+|.....+ +..+++.+
T Consensus 80 g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 80 GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 5888999999976544 56666554
No 301
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=78.85 E-value=14 Score=36.43 Aligned_cols=105 Identities=13% Similarity=0.158 Sum_probs=69.8
Q ss_pred cCcccCCc-c-hhHhHHHHhccCCCCc--EEEEecccchHHHHHHHhhhcccCCcceEEeeC-CCCCCChHHHHHHHHHh
Q 015225 29 PLFPLAGQ-P-MIQHPISACKRIPNLA--QIFLIGFYEEREFALYVSSISNELKVPVRYLKE-DKPHGSAGGLYYFRDMI 103 (411)
Q Consensus 29 ~llpi~g~-p-li~~~l~~l~~~~gi~--~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~-~~~~g~~~~l~~~~~~i 103 (411)
-++|.-|. + .++.+++.+.++ ... +|+++.....+...+.+++...+.+..++.... ....|-++++..+....
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~-dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~ 136 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQ-DYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRA 136 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhC-CCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhc
Confidence 34566566 6 899999999997 433 677776655556667776654444333444322 34456688888888776
Q ss_pred hccCCCeEEEEcCCcccCCC-hHHHHHHHHhcCCe
Q 015225 104 MEENPSHIILLNCDVCCSFP-LPDLLEAHKRYGGM 137 (411)
Q Consensus 104 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 137 (411)
. .+.++++.+|+....+ +..++..+.+....
T Consensus 137 ~---~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 137 K---GDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred C---CCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 5 5888899999987555 78888777654433
No 302
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=77.36 E-value=21 Score=31.55 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=57.2
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcC
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNC 116 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~ 116 (411)
+.+..+|+.+.++ ...+|+|+.....+...+.+....+ ...+.++.. ...|-..++..+.+... .+.++++.+
T Consensus 14 ~~l~~~l~sl~~q-~~~eiivvdd~s~d~~~~~l~~~~~--~~~~~v~~~-~~~g~~~a~n~g~~~a~---~d~v~~lD~ 86 (235)
T cd06434 14 DVFRECLRSILRQ-KPLEIIVVTDGDDEPYLSILSQTVK--YGGIFVITV-PHPGKRRALAEGIRHVT---TDIVVLLDS 86 (235)
T ss_pred HHHHHHHHHHHhC-CCCEEEEEeCCCChHHHHHHHhhcc--CCcEEEEec-CCCChHHHHHHHHHHhC---CCEEEEECC
Confidence 6788889998886 3566777655444444455432211 223444443 34577777777776654 688999999
Q ss_pred CcccCCC-hHHHHHHHH
Q 015225 117 DVCCSFP-LPDLLEAHK 132 (411)
Q Consensus 117 D~i~~~~-l~~~l~~~~ 132 (411)
|.....+ +..+++...
T Consensus 87 D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 87 DTVWPPNALPEMLKPFE 103 (235)
T ss_pred CceeChhHHHHHHHhcc
Confidence 9987544 778777765
No 303
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=76.62 E-value=31 Score=30.43 Aligned_cols=90 Identities=11% Similarity=0.135 Sum_probs=56.8
Q ss_pred cCCc-chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeE
Q 015225 33 LAGQ-PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHI 111 (411)
Q Consensus 33 i~g~-pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~ 111 (411)
.++. ..|..+|+.+... ..+|+|+-+...+......+. ....+.++......|-+.+...+.+.....+.+.+
T Consensus 6 yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~~~~~----~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 6 YNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIELRLRL----NSEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred ecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHHHhhc----cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 3455 7888899998875 566777644333222222221 12356666655567888888888776642234889
Q ss_pred EEEcCCcccCCC-hHHHH
Q 015225 112 ILLNCDVCCSFP-LPDLL 128 (411)
Q Consensus 112 lv~~~D~i~~~~-l~~~l 128 (411)
+++.+|...+.+ +..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 999999987544 66664
No 304
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=75.01 E-value=21 Score=29.61 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=44.2
Q ss_pred ECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEcceEE
Q 015225 317 ISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVINSIV 395 (411)
Q Consensus 317 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~i 395 (411)
-..++.|++..+|...+..+...|. |++..+....+.+.|..++++.+ -+=+..-.|..|+++.|...
T Consensus 54 s~~~iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~v~G----------dI~~~~i~v~~Ga~f~G~~~ 121 (146)
T COG1664 54 SDGGIVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGRVIG----------DITTKEITVEEGAIFEGDCE 121 (146)
T ss_pred eCCCEEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcEEee----------eecccEEEEccCCEEEeEEE
Confidence 3333777777777766666665555 66666667777888888887777 35555666667776644333
No 305
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=74.05 E-value=2.9 Score=41.08 Aligned_cols=40 Identities=30% Similarity=0.555 Sum_probs=32.8
Q ss_pred ceEEEEEecCCCCCcccccCCCCCCccCcccCC---cchhHhHHHHhc
Q 015225 3 KVVAVIMVGGPTKGTRFRPLSFNTPKPLFPLAG---QPMIQHPISACK 47 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~plt~~~pK~llpi~g---~pli~~~l~~l~ 47 (411)
+..++++||| .|+|+.- ..||.+++++- +.++++..+.+.
T Consensus 97 ~~a~~llaGg--qgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il 139 (477)
T KOG2388|consen 97 KVAVVLLAGG--QGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERIL 139 (477)
T ss_pred cceEEEeccC--ceeeecc---CCCcceeecCCccccchhhhhHHHHH
Confidence 4678999999 9999987 88999999984 458877776644
No 306
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=72.50 E-value=35 Score=33.24 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=63.1
Q ss_pred CcccCCc-chhHhHHHHhccCCC--CcEEEEecccchHHHHHHHhhhcccCC--cceEEeeCCC----CCCChHHHHHHH
Q 015225 30 LFPLAGQ-PMIQHPISACKRIPN--LAQIFLIGFYEEREFALYVSSISNELK--VPVRYLKEDK----PHGSAGGLYYFR 100 (411)
Q Consensus 30 llpi~g~-pli~~~l~~l~~~~g--i~~I~Iv~~~~~~~i~~~~~~~~~~~~--~~i~~v~~~~----~~g~~~~l~~~~ 100 (411)
.+|.-|. ..|...|+.+.++.. .-+|+||-+...|...+.+++..++.+ ..++++.... ..|-..++..+.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 4555554 889999999877521 236776655444433444443222222 2456554221 124445676666
Q ss_pred HHhhccC--CCeEEEEcCCcccC-CChHHHHHHHHhcCCee
Q 015225 101 DMIMEEN--PSHIILLNCDVCCS-FPLPDLLEAHKRYGGMG 138 (411)
Q Consensus 101 ~~i~~~~--~~~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~ 138 (411)
+...... .+.++++.+|+..+ ..+..+++...+.+.++
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 6543111 47889999999864 44788888776666553
No 307
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=71.16 E-value=47 Score=28.46 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=54.4
Q ss_pred cchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeC---CCCCCChHHHHHHHHHhhcc------
Q 015225 36 QPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKE---DKPHGSAGGLYYFRDMIMEE------ 106 (411)
Q Consensus 36 ~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~---~~~~g~~~~l~~~~~~i~~~------ 106 (411)
...|..+|+.+.....--+|+|+-....+...+.++ . ......+.++.. ....|-++++..+++.....
T Consensus 9 ~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~-~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~ 86 (191)
T cd06436 9 EAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-L-AITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGA 86 (191)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-h-eecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhcccccc
Confidence 367888888888752223566665444444445554 1 112234565543 22347788888887765311
Q ss_pred --CCCeEEEEcCCcccCCC-hHHHHHHH
Q 015225 107 --NPSHIILLNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 107 --~~~~~lv~~~D~i~~~~-l~~~l~~~ 131 (411)
..+.++++.+|...+.+ +..+....
T Consensus 87 ~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 87 DPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred CCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 12578899999986444 66655444
No 308
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=70.97 E-value=13 Score=28.37 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEEC-CCCEECCCcEEecCCcCCcccceeEECCCCEECCCcEEc
Q 015225 313 PNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIG-WKSSLGRWARVQGNGDYNAKLGITILGEAVTVEDEVVVI 391 (411)
Q Consensus 313 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~-~~~~ig~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 391 (411)
++........|+.++.|...+-.+.+.|. +. +.+.+.. +.+.|...+++.+ .+-.....|..++.+.
T Consensus 29 G~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G----------~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 29 GNIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG----------DITAGKLEVEGGASIN 96 (101)
T ss_pred EEEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE----------EEEECEEEEeCCCEEE
Confidence 34444446677777777766666666664 44 5544444 5666777777776 4555556666666664
Q ss_pred c
Q 015225 392 N 392 (411)
Q Consensus 392 ~ 392 (411)
+
T Consensus 97 G 97 (101)
T PF04519_consen 97 G 97 (101)
T ss_pred E
Confidence 4
No 309
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=70.65 E-value=42 Score=29.80 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=53.6
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcC
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNC 116 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~ 116 (411)
..|...|+.+... ..+|+|+-+...+...+.+++ ++. .++.. ...|-+.+...+++... .++++++.+
T Consensus 13 ~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~~----~~~--~v~~~-~~~g~~~~~n~~~~~a~---~d~vl~lDa 80 (229)
T cd02511 13 RNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAKE----YGA--KVYQR-WWDGFGAQRNFALELAT---NDWVLSLDA 80 (229)
T ss_pred HHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHHH----cCC--EEEEC-CCCChHHHHHHHHHhCC---CCEEEEEeC
Confidence 5678888888764 367887765444444454443 333 33333 44567777777777654 579999999
Q ss_pred CcccCCC-hHHHHHHHHh
Q 015225 117 DVCCSFP-LPDLLEAHKR 133 (411)
Q Consensus 117 D~i~~~~-l~~~l~~~~~ 133 (411)
|.....+ +..+.+...+
T Consensus 81 D~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 81 DERLTPELADEILALLAT 98 (229)
T ss_pred CcCcCHHHHHHHHHHHhC
Confidence 9987555 5555555443
No 310
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=70.40 E-value=34 Score=32.68 Aligned_cols=108 Identities=9% Similarity=0.022 Sum_probs=60.8
Q ss_pred cccCCc-chhHhHHHHhccC---------CCCcEEEEecccchHHHHHHHhhhccc---CCcceEEeeCCCCCCChHHHH
Q 015225 31 FPLAGQ-PMIQHPISACKRI---------PNLAQIFLIGFYEEREFALYVSSISNE---LKVPVRYLKEDKPHGSAGGLY 97 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~---------~gi~~I~Iv~~~~~~~i~~~~~~~~~~---~~~~i~~v~~~~~~g~~~~l~ 97 (411)
+|.-|. +-|..+++.+.+. ...-+|+||-....+...+.+++..+. .+.++.++......|-+.++.
T Consensus 76 IP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~ 155 (333)
T PTZ00260 76 IPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVR 155 (333)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHH
Confidence 344443 5566666655321 123467766443333333333332221 123577776666678899988
Q ss_pred HHHHHhhccCCCeEEEEcCCccc-CCChHHHHHHHHh---cCCeeEEE
Q 015225 98 YFRDMIMEENPSHIILLNCDVCC-SFPLPDLLEAHKR---YGGMGTML 141 (411)
Q Consensus 98 ~~~~~i~~~~~~~~lv~~~D~i~-~~~l~~~l~~~~~---~~~~~~~~ 141 (411)
.+...-. .+.++++.+|... ..++..+++...+ .+.++++.
T Consensus 156 ~Gi~~a~---gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 156 IGMLASR---GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred HHHHHcc---CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEe
Confidence 8877543 5788899999875 3456777666543 44454433
No 311
>PRK10018 putative glycosyl transferase; Provisional
Probab=69.91 E-value=58 Score=30.22 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=56.6
Q ss_pred chhHhHHHHhccCCCCc--EEEEeccc--chHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEE
Q 015225 37 PMIQHPISACKRIPNLA--QIFLIGFY--EEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHII 112 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~--~I~Iv~~~--~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~l 112 (411)
..|..+|+.+..+ ... +++||-.. ..+.+.+++... .+..+.++......|.+.+.-.+++... .+.++
T Consensus 18 ~~l~~~l~Svl~Q-t~~~~EiIVVDDgS~~~~~~~~~~~~~---~~~ri~~i~~~~n~G~~~a~N~gi~~a~---g~~I~ 90 (279)
T PRK10018 18 QLAIRAIKSVLRQ-DYSNWEMIIVDDCSTSWEQLQQYVTAL---NDPRITYIHNDINSGACAVRNQAIMLAQ---GEYIT 90 (279)
T ss_pred HHHHHHHHHHHhC-CCCCeEEEEEECCCCCHHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence 5567788777664 233 45555322 223445554431 1246777776666788888877777654 58889
Q ss_pred EEcCCccc-CCChHHHHHHHHh
Q 015225 113 LLNCDVCC-SFPLPDLLEAHKR 133 (411)
Q Consensus 113 v~~~D~i~-~~~l~~~l~~~~~ 133 (411)
++.+|... +..+..+++...+
T Consensus 91 ~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 91 GIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EECCCCCCCccHHHHHHHHHHh
Confidence 99999986 4447777776544
No 312
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=67.60 E-value=2.5 Score=37.58 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=51.1
Q ss_pred eEEEEEecCCC-CCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceE
Q 015225 4 VVAVIMVGGPT-KGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVR 82 (411)
Q Consensus 4 ~~aiIla~G~~-~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~ 82 (411)
|.+||+--... --|||.+. .+-.--.=.-..|+..++..+.. ++ +++|+.... +..+.. ..+ .++
T Consensus 1 m~~VIPvK~~~~aKSRLs~~---L~~~eR~~La~aMl~Dvl~al~~---v~-v~vVs~d~~--v~~~a~---~~~--g~~ 66 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV---LSPEEREALALAMLRDVLAALRA---VD-VVVVSRDPE--VAALAR---ARL--GAE 66 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT---S-HHHHHHHHHHHHHHHHHHHHH----S-EEEEES--S---TTTTT--------SSE
T ss_pred CeEEEEcCCCCccccccCcc---CCHHHHHHHHHHHHHHHHHHHHh---cC-eEEeccchh--hhhhhh---hcc--CCe
Confidence 66778775411 23788652 11110001123578999999977 45 777764321 211111 123 345
Q ss_pred EeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHH
Q 015225 83 YLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAH 131 (411)
Q Consensus 83 ~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~ 131 (411)
++.+. ..|...++..+.... ..+.++++++|++. ..++..++...
T Consensus 67 vl~d~-~~gLN~Al~~a~~~~---~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 67 VLPDP-GRGLNAALNAALAAA---GDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp EEE----S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred EecCC-CCCHHHHHHHHHhcc---CCCceEEeecCCccCCHHHHHHHHhcc
Confidence 55544 467788888773323 26899999999984 66778777653
No 313
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=67.55 E-value=47 Score=29.00 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=52.8
Q ss_pred chhHhHHHHhccCCCC--cEEEEecccchHHHHHHHhhhcccC-CcceEEeeC----CCCCCChHHHHHHHHHhhccCCC
Q 015225 37 PMIQHPISACKRIPNL--AQIFLIGFYEEREFALYVSSISNEL-KVPVRYLKE----DKPHGSAGGLYYFRDMIMEENPS 109 (411)
Q Consensus 37 pli~~~l~~l~~~~gi--~~I~Iv~~~~~~~i~~~~~~~~~~~-~~~i~~v~~----~~~~g~~~~l~~~~~~i~~~~~~ 109 (411)
..|..+|+.+...... -+|+|+-....+...+.++++..+. ..++.++.. ....|.+.+...+.+... .+
T Consensus 10 ~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~---gd 86 (219)
T cd06913 10 QWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSS---GR 86 (219)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcC---CC
Confidence 6788888888765211 2566664433332233333321111 123443321 223466667666665543 58
Q ss_pred eEEEEcCCccc-CCChHHHHHHHHhcC
Q 015225 110 HIILLNCDVCC-SFPLPDLLEAHKRYG 135 (411)
Q Consensus 110 ~~lv~~~D~i~-~~~l~~~l~~~~~~~ 135 (411)
.++++.+|.+. +..+..++....+..
T Consensus 87 ~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 87 YLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred EEEEECCCccCChhHHHHHHHHHHhCC
Confidence 89999999876 445777776665444
No 314
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=67.31 E-value=7.6 Score=34.27 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred CcccCCc-chhHhHHHHhccCCC-CcEEEEecccchHHHHHHHhhhcccCC-cceEEeeCCCCCC---ChHHHHHHHHHh
Q 015225 30 LFPLAGQ-PMIQHPISACKRIPN-LAQIFLIGFYEEREFALYVSSISNELK-VPVRYLKEDKPHG---SAGGLYYFRDMI 103 (411)
Q Consensus 30 llpi~g~-pli~~~l~~l~~~~g-i~~I~Iv~~~~~~~i~~~~~~~~~~~~-~~i~~v~~~~~~g---~~~~l~~~~~~i 103 (411)
++|..|. +.+..+|+.+..+.. --+|+|+.....+...+.+++....++ ..+.++......| ...++..+++..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 4555555 688888888887421 123444443322222233332222333 2567765443223 355666666665
Q ss_pred hccCCCeEEEEcCCcccCCC-hHHHHHHHHhcCCe
Q 015225 104 MEENPSHIILLNCDVCCSFP-LPDLLEAHKRYGGM 137 (411)
Q Consensus 104 ~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~ 137 (411)
. .+.++++..|.+.+.+ +..+++.+...+..
T Consensus 86 ~---~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 86 R---GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp -----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred C---CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 4 6899999999987544 78888777334433
No 315
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=65.65 E-value=48 Score=29.24 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=50.4
Q ss_pred chhHhHHHHhccCCCC---cEEEEecccch---HHHHHHHhhhcccCCcceEEeeCCCCCC-ChHHHHHHHHHhhccCCC
Q 015225 37 PMIQHPISACKRIPNL---AQIFLIGFYEE---REFALYVSSISNELKVPVRYLKEDKPHG-SAGGLYYFRDMIMEENPS 109 (411)
Q Consensus 37 pli~~~l~~l~~~~gi---~~I~Iv~~~~~---~~i~~~~~~~~~~~~~~i~~v~~~~~~g-~~~~l~~~~~~i~~~~~~ 109 (411)
..|...|+.+..+... -+|+|+-+... +.+++...+. ...+.++..+......| .++++..+.+... .+
T Consensus 14 ~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~-~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~---~~ 89 (232)
T cd06437 14 YVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEY-AAQGVNIKHVRRADRTGYKAGALAEGMKVAK---GE 89 (232)
T ss_pred HHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHH-hhcCCceEEEECCCCCCCchHHHHHHHHhCC---CC
Confidence 5778888888764222 14544433221 2233333221 11244566665444445 3667766776654 68
Q ss_pred eEEEEcCCcccCCC-hHHHHHHH
Q 015225 110 HIILLNCDVCCSFP-LPDLLEAH 131 (411)
Q Consensus 110 ~~lv~~~D~i~~~~-l~~~l~~~ 131 (411)
.++++.+|...+.+ +..+....
T Consensus 90 ~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 90 YVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred EEEEEcCCCCCChHHHHHhhhhh
Confidence 89999999987544 66644433
No 316
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=65.10 E-value=63 Score=35.09 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=63.5
Q ss_pred cCcccCCcc--hhHhHHHHhccCCCC---cEEEEecccchHHHHHHHhhhcccCCcceEEeeCC-CCCCChHHHHHHHHH
Q 015225 29 PLFPLAGQP--MIQHPISACKRIPNL---AQIFLIGFYEEREFALYVSSISNELKVPVRYLKED-KPHGSAGGLYYFRDM 102 (411)
Q Consensus 29 ~llpi~g~p--li~~~l~~l~~~~gi---~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~-~~~g~~~~l~~~~~~ 102 (411)
-++|.-|.+ ++..++..+.....- =+|+|+-....+..++..++ . .+.++... ...+-++++-.+++.
T Consensus 264 ViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~----~--~v~yI~R~~n~~gKAGnLN~aL~~ 337 (852)
T PRK11498 264 IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE----V--GVKYIARPTHEHAKAGNINNALKY 337 (852)
T ss_pred EEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH----C--CcEEEEeCCCCcchHHHHHHHHHh
Confidence 456677876 577788776554221 15676655445556666554 2 35665433 334557788877776
Q ss_pred hhccCCCeEEEEcCCcccCCC-hHHHHHHHHhcCCeeEEEEE
Q 015225 103 IMEENPSHIILLNCDVCCSFP-LPDLLEAHKRYGGMGTMLVI 143 (411)
Q Consensus 103 i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~~~~~~~~~~ 143 (411)
.+ .+.++++.+|.+...+ ++.++..+.+.. ...++.+
T Consensus 338 a~---GEyIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQt 375 (852)
T PRK11498 338 AK---GEFVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQT 375 (852)
T ss_pred CC---CCEEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEEc
Confidence 54 5889999999987554 566666554433 3333433
No 317
>PRK10063 putative glycosyl transferase; Provisional
Probab=61.38 E-value=1.3e+02 Score=27.26 Aligned_cols=90 Identities=10% Similarity=0.129 Sum_probs=50.0
Q ss_pred chhHhHHHHhccC---CCC-cEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEE
Q 015225 37 PMIQHPISACKRI---PNL-AQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHII 112 (411)
Q Consensus 37 pli~~~l~~l~~~---~gi-~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~l 112 (411)
..|..+|+.+.++ ... -+++|+-+...+...+.+++.... ..+.++.+. ..|.++++..+++... .+.++
T Consensus 14 ~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~--~~i~~i~~~-~~G~~~A~N~Gi~~a~---g~~v~ 87 (248)
T PRK10063 14 EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGI--FNLRFVSEP-DNGIYDAMNKGIAMAQ---GRFAL 87 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhccc--CCEEEEECC-CCCHHHHHHHHHHHcC---CCEEE
Confidence 4567777776421 111 245555332333344555543211 136666654 3488888888888654 58888
Q ss_pred EEcCCcccCCChHHHHHHHH
Q 015225 113 LLNCDVCCSFPLPDLLEAHK 132 (411)
Q Consensus 113 v~~~D~i~~~~l~~~l~~~~ 132 (411)
++.+|.+...+...++....
T Consensus 88 ~ld~DD~~~~~~~~~~~~~~ 107 (248)
T PRK10063 88 FLNSGDIFHQDAANFVRQLK 107 (248)
T ss_pred EEeCCcccCcCHHHHHHHHH
Confidence 99977776444333444433
No 318
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=60.89 E-value=72 Score=29.83 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=65.9
Q ss_pred cccCCcchhHhHHHHhccCCCCcEEEE-ecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCC
Q 015225 31 FPLAGQPMIQHPISACKRIPNLAQIFL-IGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPS 109 (411)
Q Consensus 31 lpi~g~pli~~~l~~l~~~~gi~~I~I-v~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~ 109 (411)
+-.+....+...++.+.++......++ +-+...+...+.++.. ....+.++...+..|-+++...+.........+
T Consensus 10 v~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~---~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 10 VTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR---FFPNVRLIENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh---cCCcEEEEEcCCCccchhhhhHHHHHHhcCCCc
Confidence 334555667777888777643333333 3333333344445441 124678888777788888887666655322222
Q ss_pred eEEEEcCCcccC-CChHHHHHHHHhcCCeeE
Q 015225 110 HIILLNCDVCCS-FPLPDLLEAHKRYGGMGT 139 (411)
Q Consensus 110 ~~lv~~~D~i~~-~~l~~~l~~~~~~~~~~~ 139 (411)
.+++++-|++.+ ..+.++++.+.+.+..+.
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 799999998764 448899998877665543
No 319
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=58.89 E-value=1.2e+02 Score=27.14 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=67.5
Q ss_pred EEEEecCCCCCcccccCCCCCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEee
Q 015225 6 AVIMVGGPTKGTRFRPLSFNTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK 85 (411)
Q Consensus 6 aiIla~G~~~g~rl~plt~~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~ 85 (411)
.++||-| .=..|.. .++ -|....+|...+..+.. + .++-|+++..+ ++.+..++ |+.++.++.+..
T Consensus 91 illlCTG--~F~~l~~-----~~~--lleP~ril~~lV~al~~--~-~~vGVivP~~e-Q~~~~~~k-W~~l~~~~~~a~ 156 (221)
T PF07302_consen 91 ILLLCTG--EFPGLTA-----RNP--LLEPDRILPPLVAALVG--G-HQVGVIVPLPE-QIAQQAEK-WQPLGNPVVVAA 156 (221)
T ss_pred EEEeccC--CCCCCCC-----Ccc--eeehHHhHHHHHHHhcC--C-CeEEEEecCHH-HHHHHHHH-HHhcCCCeEEEE
Confidence 5667777 4334422 333 45667899999999987 3 78888887543 34433333 344455666665
Q ss_pred CCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHH
Q 015225 86 EDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEA 130 (411)
Q Consensus 86 ~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~ 130 (411)
-....++.+.+..|...+.. ...+++++.|=-++. ..+++++.
T Consensus 157 asPy~~~~~~l~~Aa~~L~~-~gadlIvLDCmGYt~-~~r~~~~~ 199 (221)
T PF07302_consen 157 ASPYEGDEEELAAAARELAE-QGADLIVLDCMGYTQ-EMRDIVQR 199 (221)
T ss_pred eCCCCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCH-HHHHHHHH
Confidence 44445788888888777752 257899998876542 23444443
No 320
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.73 E-value=84 Score=27.20 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=54.1
Q ss_pred cccCCc-chhHhHHHHhccCC-CCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCC
Q 015225 31 FPLAGQ-PMIQHPISACKRIP-NLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENP 108 (411)
Q Consensus 31 lpi~g~-pli~~~l~~l~~~~-gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~ 108 (411)
+|.-|. +.|...|+.+..+. ..-+|+|+-+...+...+.+.+ ..+.+.... .|.+.+...+.+... .
T Consensus 5 i~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~------~~~~~~~~~--~g~~~a~n~g~~~a~---~ 73 (221)
T cd02522 5 IPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS------AGVVVISSP--KGRARQMNAGAAAAR---G 73 (221)
T ss_pred EEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc------CCeEEEeCC--cCHHHHHHHHHHhcc---C
Confidence 445444 56788888877752 1245666644333333444433 234444433 466677766766654 5
Q ss_pred CeEEEEcCCcccCC-ChHHHHHHHHhcC
Q 015225 109 SHIILLNCDVCCSF-PLPDLLEAHKRYG 135 (411)
Q Consensus 109 ~~~lv~~~D~i~~~-~l~~~l~~~~~~~ 135 (411)
+.++++..|..... -+..++......+
T Consensus 74 ~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 74 DWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred CEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 88999999997643 3666655544433
No 321
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=53.69 E-value=90 Score=23.19 Aligned_cols=79 Identities=5% Similarity=-0.024 Sum_probs=44.3
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCC-CChHHHHHHHHHhhccCCCeEEEEc
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPH-GSAGGLYYFRDMIMEENPSHIILLN 115 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~-g~~~~l~~~~~~i~~~~~~~~lv~~ 115 (411)
++|...|...... |+++++|+-+...+...+.+++. . ++.+......... ......+.+...- ....++++.+.
T Consensus 5 ~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~-~--~v~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~dWvl~~D 79 (97)
T PF13704_consen 5 DYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRAL-P--GVGIIRWVDPYRDERRQRAWRNALIER-AFDADWVLFLD 79 (97)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhC-C--CcEEEEeCCCccchHHHHHHHHHHHHh-CCCCCEEEEEe
Confidence 6788888888887 99999998776555566667653 1 2222222111111 1111222221111 12368899999
Q ss_pred CCccc
Q 015225 116 CDVCC 120 (411)
Q Consensus 116 ~D~i~ 120 (411)
+|-+.
T Consensus 80 ~DEfl 84 (97)
T PF13704_consen 80 ADEFL 84 (97)
T ss_pred eeEEE
Confidence 99974
No 322
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=51.07 E-value=1.6e+02 Score=31.55 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=57.3
Q ss_pred CcccCCcc--hhHhHHHHhccCCCC---cEEEEecccchH-------H-------HHHHHhhhcccCCcceEEeeCCC-C
Q 015225 30 LFPLAGQP--MIQHPISACKRIPNL---AQIFLIGFYEER-------E-------FALYVSSISNELKVPVRYLKEDK-P 89 (411)
Q Consensus 30 llpi~g~p--li~~~l~~l~~~~gi---~~I~Iv~~~~~~-------~-------i~~~~~~~~~~~~~~i~~v~~~~-~ 89 (411)
++|.-|.+ ++..+++.+...... -+|+|+-....| . -++.+++..++. .+.++.... .
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~--~v~yi~r~~n~ 213 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL--GVNYITRPRNV 213 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc--CcEEEECCCCC
Confidence 56777875 567788887664222 156665432111 0 012222222222 456554332 2
Q ss_pred CCChHHHHHHHHHhhccCCCeEEEEcCCcccCCC-hHHHHHHHHhc
Q 015225 90 HGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP-LPDLLEAHKRY 134 (411)
Q Consensus 90 ~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-l~~~l~~~~~~ 134 (411)
.+-++++..+++..+ .+.++++.+|.+...+ +..++..+.+.
T Consensus 214 ~~KAgnLN~al~~a~---gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 214 HAKAGNINNALKHTD---GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CCChHHHHHHHHhcC---CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 344778887777654 5889999999987555 67777766443
No 323
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=42.90 E-value=1.3e+02 Score=28.34 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=57.1
Q ss_pred ccCCc-chhHhHHHHhccC---CCCcEEEEecccchHHHHHHHhhhcccCCcceEEee-CCCCCCChHHHHHHHHHhhcc
Q 015225 32 PLAGQ-PMIQHPISACKRI---PNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLK-EDKPHGSAGGLYYFRDMIMEE 106 (411)
Q Consensus 32 pi~g~-pli~~~l~~l~~~---~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~-~~~~~g~~~~l~~~~~~i~~~ 106 (411)
|.-|. ..|..+++.+.+. ....+|+||-....+...+.+++...+.-.....+. .....|-+.++..+.....
T Consensus 38 PayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~-- 115 (306)
T PRK13915 38 PALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALWRSLAATT-- 115 (306)
T ss_pred ecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHHHHHHhcC--
Confidence 33343 5667777776642 124577776544444444444432111000011111 1234577788877766543
Q ss_pred CCCeEEEEcCCcc-c-CCChHHHHHHHH-hcCCeeEEE
Q 015225 107 NPSHIILLNCDVC-C-SFPLPDLLEAHK-RYGGMGTML 141 (411)
Q Consensus 107 ~~~~~lv~~~D~i-~-~~~l~~~l~~~~-~~~~~~~~~ 141 (411)
.+.++++.+|.. . +..+..+++... +.+.+++..
T Consensus 116 -gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 116 -GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred -CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 588999999996 4 445788887765 334454433
No 324
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=42.85 E-value=99 Score=25.61 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=38.3
Q ss_pred CEECCCCEECCCcEECCCcEECCCcEEEeeEECCCCEECCCcEEEeeEECCCCEECCCcEEecC
Q 015225 303 AKVHPTAKIGPNVSISANVRVGAGVRLISCIVLDDVEIKENAVVLNSIIGWKSSLGRWARVQGN 366 (411)
Q Consensus 303 ~~v~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~s~i~~~~~ig~~~~i~~~ 366 (411)
..|++.+.|. +.+-.+...| +|.+..|....+.+.|...+.+.+-+-+....+..++++.+.
T Consensus 58 iiv~~~g~V~-gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 58 IVVGESGRVE-GEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEECCccEEE-EEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeE
Confidence 4555555554 2222233333 355555566667777777777777777778888888877774
No 325
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=38.29 E-value=2.7e+02 Score=25.56 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHhhccCCCeEEEEcCCcccCCC-hHHHHH
Q 015225 90 HGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFP-LPDLLE 129 (411)
Q Consensus 90 ~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~-l~~~l~ 129 (411)
.+.+.+.-.+...-. .+.++++.+|.+...+ +..+++
T Consensus 74 f~~a~arN~g~~~A~---~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 74 FSRAKARNIGAKYAR---GDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCHHHHHHHHHHHcC---CCEEEEEcCCeeeCHHHHHHHHH
Confidence 466766666666554 6888899999987544 677777
No 326
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=36.00 E-value=75 Score=30.82 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHhccCCCCcEEEEecccch--HHHHHHHhhhccc-CCcceEEeeCCCCC--CChHHHHHHHHHhhccCCCeEEEEcC
Q 015225 42 PISACKRIPNLAQIFLIGFYEE--REFALYVSSISNE-LKVPVRYLKEDKPH--GSAGGLYYFRDMIMEENPSHIILLNC 116 (411)
Q Consensus 42 ~l~~l~~~~gi~~I~Iv~~~~~--~~i~~~~~~~~~~-~~~~i~~v~~~~~~--g~~~~l~~~~~~i~~~~~~~~lv~~~ 116 (411)
++..+.+.+.++.++|+++.+. +....+++...-. -+-.+.+.....+. -++..+...-+.+... .-+.++++|
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~-kPD~VlVhG 100 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEE-KPDLVLVHG 100 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhh-CCCEEEEeC
Confidence 4667777645899999998776 6665666553211 11122332212111 2233333333333322 356889999
Q ss_pred Cccc
Q 015225 117 DVCC 120 (411)
Q Consensus 117 D~i~ 120 (411)
|+-+
T Consensus 101 DT~t 104 (383)
T COG0381 101 DTNT 104 (383)
T ss_pred Ccch
Confidence 9964
No 327
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=35.46 E-value=3.3e+02 Score=24.91 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=52.5
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcC
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNC 116 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~ 116 (411)
.-++...+.+.++ ++|++++......+.+++.....+.|..+... +..+.+......+. .++++++-+
T Consensus 116 ~~l~~~~~~i~~a---~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~------~d~~~~~~~~~~~~---~~Dv~I~iS 183 (278)
T PRK11557 116 EKLHECVTMLRSA---RRIILTGIGASGLVAQNFAWKLMKIGINAVAE------RDMHALLATVQALS---PDDLLLAIS 183 (278)
T ss_pred HHHHHHHHHHhcC---CeEEEEecChhHHHHHHHHHHHhhCCCeEEEc------CChHHHHHHHHhCC---CCCEEEEEc
Confidence 3344455555554 67998877666667777765434455544332 22333443444443 466665543
Q ss_pred CcccCCChHHHHHHHHhcCCeeEEEEEe
Q 015225 117 DVCCSFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 117 D~i~~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
=.-...++..+++..++.++.. ++.+.
T Consensus 184 ~sg~~~~~~~~~~~ak~~ga~i-I~IT~ 210 (278)
T PRK11557 184 YSGERRELNLAADEALRVGAKV-LAITG 210 (278)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE-EEEcC
Confidence 3333455667777777777774 44444
No 328
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=34.22 E-value=92 Score=25.18 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred ceEEEEEecCCCCCccccc-CCCCCCccCcccCCc---c---hhHhHHHHhccCCCCcEEEEecccch---HHHHHHHh
Q 015225 3 KVVAVIMVGGPTKGTRFRP-LSFNTPKPLFPLAGQ---P---MIQHPISACKRIPNLAQIFLIGFYEE---REFALYVS 71 (411)
Q Consensus 3 ~~~aiIla~G~~~g~rl~p-lt~~~pK~llpi~g~---p---li~~~l~~l~~~~gi~~I~Iv~~~~~---~~i~~~~~ 71 (411)
++.+.+.++- +.-+||.| ++.-.+|+-+-+--| + =|+.+-++|.++ |-+.|+.....+. +++.+++.
T Consensus 66 dvi~~v~~an-d~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea-Ga~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 66 DVIIYVHAAN-DPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREA-GAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred ceeeeeeccc-CccccCCcccccccccceEEEEecccccchHhHHHHHHHHHHc-CCcceEEEeccCcccHHHHHHHHH
Confidence 3556667765 35678866 333334432222111 1 246667778887 7888887665433 44444443
No 329
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=34.16 E-value=1e+02 Score=26.78 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=63.4
Q ss_pred eEEEEEe---cCCCCCcccccCCC-CCCccCcccCCcchhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc
Q 015225 4 VVAVIMV---GGPTKGTRFRPLSF-NTPKPLFPLAGQPMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV 79 (411)
Q Consensus 4 ~~aiIla---~G~~~g~rl~plt~-~~pK~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~ 79 (411)
|.+||+- ++ .-|||.|.-. +.=+.++ .-|+..++..+... +.+|.|++...+ +..+. .
T Consensus 1 mr~iIPvk~~~~--aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~--~~~i~Vvtpde~--~~~~a--------~ 62 (210)
T COG1920 1 MRAIIPVKRLAD--AKTRLSPVLSAEERENFA----LAMLVDVLGALAGV--LGEITVVTPDEE--VLVPA--------T 62 (210)
T ss_pred CceEEeccccCc--chhccccccCHHHHHHHH----HHHHHHHHHHhhhh--cCCceEEcCChH--hhhhc--------c
Confidence 4556654 34 5688887322 2222221 25888899998874 788999987443 21111 1
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc--CCChHHHHHHH
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC--SFPLPDLLEAH 131 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~--~~~l~~~l~~~ 131 (411)
+.++... .+...++.++++.+.. ++.++|+++|++. ..+++.+++..
T Consensus 63 ~~~vl~d---~dLN~Ai~aa~~~~~~--p~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 63 KLEVLAD---PDLNTAINAALDEIPL--PSEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred cceeeec---cchHHHHHHHHhhCCC--CcceEEEecccccCCHHHHHHHHHhc
Confidence 2233332 2356778878777742 2669999999984 56677777653
No 330
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=33.96 E-value=1.6e+02 Score=29.64 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCCccCcccCC------cchhHhHHHHhccC--CCCcEEEEe-cccchHHHHHHHhh
Q 015225 25 NTPKPLFPLAG------QPMIQHPISACKRI--PNLAQIFLI-GFYEEREFALYVSS 72 (411)
Q Consensus 25 ~~pK~llpi~g------~pli~~~l~~l~~~--~gi~~I~Iv-~~~~~~~i~~~~~~ 72 (411)
..||.|||+.. .|+=+|..+...-+ .|.-++... +..+.+.+++.+.+
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~ 221 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEE 221 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHH
Confidence 57999999863 38999999986553 244455554 44555666666655
No 331
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=30.09 E-value=2e+02 Score=22.90 Aligned_cols=84 Identities=8% Similarity=0.002 Sum_probs=38.4
Q ss_pred HHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-
Q 015225 42 PISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC- 120 (411)
Q Consensus 42 ~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~- 120 (411)
+|+.+.+....+.++.+.+.........+ .....+.+..|. ..+.+.-+..+.+.. ....+.++++-+|.+.
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~Q~-g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l 73 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQL-----WLPSGFSFFPQQ-GGDLGERMANAFQQA-ARGYEPVVLIGSDCPDL 73 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHH-----HH-TTSEEEE---SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT-
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhcc-----ccCCCCEEeecC-CCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCC
Confidence 45666665334434444444332222211 122356777774 346677787777776 2335799999999984
Q ss_pred -CCChHHHHHHHH
Q 015225 121 -SFPLPDLLEAHK 132 (411)
Q Consensus 121 -~~~l~~~l~~~~ 132 (411)
...|...++...
T Consensus 74 ~~~~l~~A~~~L~ 86 (122)
T PF09837_consen 74 TPDDLEQAFEALQ 86 (122)
T ss_dssp -HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhc
Confidence 445666665543
No 332
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=29.84 E-value=64 Score=25.65 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=18.1
Q ss_pred CcchhHhHHHHhccCCCCcEEEEe
Q 015225 35 GQPMIQHPISACKRIPNLAQIFLI 58 (411)
Q Consensus 35 g~pli~~~l~~l~~~~gi~~I~Iv 58 (411)
+.|-++..++.|... |.++|+|+
T Consensus 44 ~~P~l~~~l~~l~~~-g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGT-GADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHc-CCCEEEEE
Confidence 568888888888885 88887775
No 333
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=29.43 E-value=73 Score=31.10 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=8.3
Q ss_pred cCCChHHHHHHHHhc
Q 015225 120 CSFPLPDLLEAHKRY 134 (411)
Q Consensus 120 ~~~~l~~~l~~~~~~ 134 (411)
++.+-+.++++|..+
T Consensus 163 TdedT~kil~ky~~~ 177 (498)
T KOG2638|consen 163 TDEDTQKILKKYAGS 177 (498)
T ss_pred cchHHHHHHHHhcCC
Confidence 345556666666443
No 334
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.31 E-value=4.4e+02 Score=24.31 Aligned_cols=95 Identities=11% Similarity=0.143 Sum_probs=59.1
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcC
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNC 116 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~ 116 (411)
--++..++.|.++ ++|++++......+..++.....+.|.++..+.. .+........+. ++++++.-+
T Consensus 118 ~~l~~av~~L~~A---~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d------~~~~~~~~~~~~---~~Dv~i~iS 185 (281)
T COG1737 118 EALERAVELLAKA---RRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSD------THGQLMQLALLT---PGDVVIAIS 185 (281)
T ss_pred HHHHHHHHHHHcC---CeEEEEEechhHHHHHHHHHHHHHcCCceeEecc------hHHHHHHHHhCC---CCCEEEEEe
Confidence 4566667777775 7788877655556667666544455666665542 122222233343 678888877
Q ss_pred CcccCCChHHHHHHHHhcCCeeEEEEEe
Q 015225 117 DVCCSFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 117 D~i~~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
-.-....+-..++..++.++.. +..+.
T Consensus 186 ~sG~t~e~i~~a~~ak~~ga~v-IaiT~ 212 (281)
T COG1737 186 FSGYTREIVEAAELAKERGAKV-IAITD 212 (281)
T ss_pred CCCCcHHHHHHHHHHHHCCCcE-EEEcC
Confidence 7777777788888888888774 44444
No 335
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=28.14 E-value=66 Score=30.89 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=44.2
Q ss_pred cccccCCCCCCccCcccCCcc-hhHhHHHHhccCCCCcEEEEecccc--hHHHHHHHhhh
Q 015225 17 TRFRPLSFNTPKPLFPLAGQP-MIQHPISACKRIPNLAQIFLIGFYE--EREFALYVSSI 73 (411)
Q Consensus 17 ~rl~plt~~~pK~llpi~g~p-li~~~l~~l~~~~gi~~I~Iv~~~~--~~~i~~~~~~~ 73 (411)
.+|.|+....+.-++.+-++| .+.++|+.|+++.||++..+|.+++ .+.+.+.+++.
T Consensus 23 ~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 23 DKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred hhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHhC
Confidence 456666667777888999995 8899999999999999998876654 25667777663
No 336
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=27.68 E-value=4.8e+02 Score=24.02 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=50.2
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcC
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNC 116 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~ 116 (411)
.-++...+.+.++ ++|++++......+..++.....+.|..+.+.. ..+.+......+. +++++++-+
T Consensus 128 ~~l~~~~~~i~~A---~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~------d~~~~~~~~~~~~---~~Dl~I~iS 195 (292)
T PRK11337 128 DEFHRAARFFYQA---RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYD------DAHIMLMSAALLQ---EGDVVLVVS 195 (292)
T ss_pred HHHHHHHHHHHcC---CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcC------CHHHHHHHHhcCC---CCCEEEEEe
Confidence 3445555556554 678887665555566666543233454444332 1222322333343 567666655
Q ss_pred CcccCCChHHHHHHHHhcCCeeEEEEEe
Q 015225 117 DVCCSFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 117 D~i~~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
-.-...++..+++..++.+... ++.+.
T Consensus 196 ~sG~t~~~~~~~~~ak~~g~~i-i~IT~ 222 (292)
T PRK11337 196 HSGRTSDVIEAVELAKKNGAKI-ICITN 222 (292)
T ss_pred CCCCCHHHHHHHHHHHHCCCeE-EEEeC
Confidence 4444445677777777777664 44444
No 337
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.82 E-value=2.7e+02 Score=20.81 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=38.6
Q ss_pred EEEecc--cchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCcccCCChHHHHHHHH
Q 015225 55 IFLIGF--YEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCCSFPLPDLLEAHK 132 (411)
Q Consensus 55 I~Iv~~--~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~~~~l~~~l~~~~ 132 (411)
|.||++ .....+++.+++ +|.++.+.. ...+....-......+. ..|++|+.-|.+.......+-+..+
T Consensus 2 vliVGG~~~~~~~~~~~~~~----~G~~~~~hg--~~~~~~~~~~~l~~~i~---~aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEK----YGGKLIHHG--RDGGDEKKASRLPSKIK---KADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCcccHHHHHHHHHH----cCCEEEEEe--cCCCCccchhHHHHhcC---CCCEEEEEeCCcChHHHHHHHHHHH
Confidence 667777 455666666654 455555551 11122222222233444 4678888888876554555555444
Q ss_pred hcCCe
Q 015225 133 RYGGM 137 (411)
Q Consensus 133 ~~~~~ 137 (411)
+.+..
T Consensus 73 k~~ip 77 (97)
T PF10087_consen 73 KYGIP 77 (97)
T ss_pred HcCCc
Confidence 44443
No 338
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=25.16 E-value=62 Score=24.10 Aligned_cols=30 Identities=3% Similarity=0.231 Sum_probs=24.2
Q ss_pred cccCCcchhHhHHHHhccC-CCCcEEEEecc
Q 015225 31 FPLAGQPMIQHPISACKRI-PNLAQIFLIGF 60 (411)
Q Consensus 31 lpi~g~pli~~~l~~l~~~-~gi~~I~Iv~~ 60 (411)
+-+|+||+..|++.-+.++ .|.++|.|-+.
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4589999999999998863 26899998654
No 339
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.46 E-value=3.4e+02 Score=21.10 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=47.2
Q ss_pred hHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCc
Q 015225 39 IQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDV 118 (411)
Q Consensus 39 i~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~ 118 (411)
|+.+.+.+.++ ++|++++......+..++.......+..+..+.. .+........+. +++++++-+-.
T Consensus 3 i~~~~~~i~~~---~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~i~iS~~ 70 (139)
T cd05013 3 LEKAVDLLAKA---RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSD------PHLQLMSAANLT---PGDVVIAISFS 70 (139)
T ss_pred HHHHHHHHHhC---CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecC------HHHHHHHHHcCC---CCCEEEEEeCC
Confidence 56677777774 6788887655555666665544445555554431 122221122232 34555443322
Q ss_pred ccCCChHHHHHHHHhcCCeeEEE
Q 015225 119 CCSFPLPDLLEAHKRYGGMGTML 141 (411)
Q Consensus 119 i~~~~l~~~l~~~~~~~~~~~~~ 141 (411)
=...++.++++..++.+....++
T Consensus 71 g~~~~~~~~~~~a~~~g~~iv~i 93 (139)
T cd05013 71 GETKETVEAAEIAKERGAKVIAI 93 (139)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEE
Confidence 22344666777766666654333
No 340
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=24.40 E-value=78 Score=23.71 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=12.8
Q ss_pred cchhHhHHHHhccCCCCcEEEEe
Q 015225 36 QPMIQHPISACKRIPNLAQIFLI 58 (411)
Q Consensus 36 ~pli~~~l~~l~~~~gi~~I~Iv 58 (411)
.|-++-.++.|... |+++|+++
T Consensus 44 ~P~i~~~l~~l~~~-g~~~vvvv 65 (101)
T cd03409 44 GPDTEEAIRELAEE-GYQRVVIV 65 (101)
T ss_pred CCCHHHHHHHHHHc-CCCeEEEE
Confidence 46666666666654 56665553
No 341
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.92 E-value=3.7e+02 Score=21.34 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=41.4
Q ss_pred chhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCC-----CCCCChHHH-HHHHHHhhccCCCe
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKED-----KPHGSAGGL-YYFRDMIMEENPSH 110 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~-----~~~g~~~~l-~~~~~~i~~~~~~~ 110 (411)
+-...+++.+.+...+..+.+.++...+....+.... +..+.++...+.. ...+..-.| ..+.+.......+.
T Consensus 20 ~~~~~l~~~i~~~~~~~~~~~y~~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ 98 (146)
T PF01936_consen 20 IDFERLLEEIRKYGPLVRIRAYGNWDDPNQKSFQEAL-QRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDT 98 (146)
T ss_dssp B-HHHHHHHHTTTEEEEEEEEEE----HHHHHHHHHH-HHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeeccccchhhHHHHH-HhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCE
Confidence 3456666777664224445555552222222222221 2234444443321 112222222 12233332222488
Q ss_pred EEEEcCCcccCCChHHHHHHHHhcCCeeEEEEE
Q 015225 111 IILLNCDVCCSFPLPDLLEAHKRYGGMGTMLVI 143 (411)
Q Consensus 111 ~lv~~~D~i~~~~l~~~l~~~~~~~~~~~~~~~ 143 (411)
++++.||. ++..+++..++.+....++..
T Consensus 99 ivLvSgD~----Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 99 IVLVSGDS----DFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp EEEE---G----GGHHHHHHHHHH--EEEEEE-
T ss_pred EEEEECcH----HHHHHHHHHHHcCCEEEEEEe
Confidence 99999995 788899988888887666653
No 342
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=23.05 E-value=3.8e+02 Score=21.08 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=34.8
Q ss_pred chhHhHHHHhccCCCCcEEEEeccc--chHHHHHHHhhhcccCCcceEEeeCC
Q 015225 37 PMIQHPISACKRIPNLAQIFLIGFY--EEREFALYVSSISNELKVPVRYLKED 87 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~~I~Iv~~~--~~~~i~~~~~~~~~~~~~~i~~v~~~ 87 (411)
--|...++.+... ++++|++.++. +.+....|+.+..+..+.++.-+.+.
T Consensus 43 l~i~~L~~ri~~~-~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~G 94 (112)
T cd01025 43 LNIDKLLERIAKG-QVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQG 94 (112)
T ss_pred cCHHHHHHHHhcC-CCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEc
Confidence 3567777888875 89999998764 34777788877655556666555433
No 343
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=21.87 E-value=88 Score=29.89 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCceEEEEEecCCCCCcccccCCC----------CCC-----ccCcccCCcchhHhHHHHhccCCCCcEEEEec
Q 015225 1 MEKVVAVIMVGGPTKGTRFRPLSF----------NTP-----KPLFPLAGQPMIQHPISACKRIPNLAQIFLIG 59 (411)
Q Consensus 1 m~~~~aiIla~G~~~g~rl~plt~----------~~p-----K~llpi~g~pli~~~l~~l~~~~gi~~I~Iv~ 59 (411)
|+.|.++||.| .|||...-.. ..+ -+++.+ ..|-|...++.|... |.++|+|+-
T Consensus 3 ~~~~~aiLLvg---HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~ePsl~eal~~l~~~-G~~~IvVvP 71 (335)
T PRK05782 3 RQSNTAIILIG---HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AEPNWRSLLNEIIKE-GYRRVIIAL 71 (335)
T ss_pred CCCCceEEEEe---cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CCCCHHHHHHHHHHC-CCCEEEEec
Confidence 67789999998 7888532110 111 123333 459999999999996 999987753
No 344
>PRK15482 transcriptional regulator MurR; Provisional
Probab=21.81 E-value=6.3e+02 Score=23.18 Aligned_cols=93 Identities=10% Similarity=-0.006 Sum_probs=48.6
Q ss_pred hHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCc
Q 015225 39 IQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDV 118 (411)
Q Consensus 39 i~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~ 118 (411)
++...+.+.++ ++|+|++......+.+++.......|..+.... ..+........+. +++++++-+-.
T Consensus 125 l~~~~~~i~~A---~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~------d~~~~~~~~~~~~---~~Dv~i~iS~s 192 (285)
T PRK15482 125 LQKIIEVISKA---PFIQITGLGGSALVGRDLSFKLMKIGYRVACEA------DTHVQATVSQALK---KGDVQIAISYS 192 (285)
T ss_pred HHHHHHHHHhC---CeeEEEEeChhHHHHHHHHHHHHhCCCeeEEec------cHhHHHHHHhcCC---CCCEEEEEeCC
Confidence 33444445554 678888766555666666653333454454432 1111222222333 45666655444
Q ss_pred ccCCChHHHHHHHHhcCCeeEEEEEe
Q 015225 119 CCSFPLPDLLEAHKRYGGMGTMLVIK 144 (411)
Q Consensus 119 i~~~~l~~~l~~~~~~~~~~~~~~~~ 144 (411)
-...++..+++..++.++. +++.+.
T Consensus 193 g~t~~~~~~~~~a~~~g~~-iI~IT~ 217 (285)
T PRK15482 193 GSKKEIVLCAEAARKQGAT-VIAITS 217 (285)
T ss_pred CCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 4455566777777777766 444444
No 345
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=21.66 E-value=4.5e+02 Score=22.93 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=12.4
Q ss_pred eEEEEEecCCCCCccccc
Q 015225 4 VVAVIMVGGPTKGTRFRP 21 (411)
Q Consensus 4 ~~aiIla~G~~~g~rl~p 21 (411)
|+.+|||.| .|+-|.+
T Consensus 2 ~ki~vl~sg--~gs~~~~ 17 (200)
T PRK05647 2 KRIVVLASG--NGSNLQA 17 (200)
T ss_pred ceEEEEEcC--CChhHHH
Confidence 678899998 8877743
No 346
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=20.55 E-value=6.3e+02 Score=22.77 Aligned_cols=83 Identities=7% Similarity=0.023 Sum_probs=46.0
Q ss_pred hhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCcceEEeeC-CC------CCCChHHHHHHHHHhhccCCCe
Q 015225 38 MIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKVPVRYLKE-DK------PHGSAGGLYYFRDMIMEENPSH 110 (411)
Q Consensus 38 li~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~-~~------~~g~~~~l~~~~~~i~~~~~~~ 110 (411)
-..-.++.|... |+++|.++++|..+ +.+.+.++.+..|.++.-... .. ..=+.++++.+...+.. .+-+
T Consensus 107 ~~~A~~~AL~al-g~~RIalvTPY~~~-v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aD 183 (239)
T TIGR02990 107 PSSAAVDGLAAL-GVRRISLLTPYTPE-TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDAD 183 (239)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCcHH-HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCC
Confidence 345677888887 99999999998763 445555544445554433211 00 11223455554444432 2345
Q ss_pred EEEEcCCcccCCC
Q 015225 111 IILLNCDVCCSFP 123 (411)
Q Consensus 111 ~lv~~~D~i~~~~ 123 (411)
-+++.|-.+-..+
T Consensus 184 AifisCTnLrt~~ 196 (239)
T TIGR02990 184 ALFLSCTALRAAT 196 (239)
T ss_pred EEEEeCCCchhHH
Confidence 5556676664444
No 347
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.41 E-value=3.3e+02 Score=22.28 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=47.2
Q ss_pred chhHhHHHHhccCCCCc-EEEEecccchHHHHHHHhhhcccCCcceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEc
Q 015225 37 PMIQHPISACKRIPNLA-QIFLIGFYEEREFALYVSSISNELKVPVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLN 115 (411)
Q Consensus 37 pli~~~l~~l~~~~gi~-~I~Iv~~~~~~~i~~~~~~~~~~~~~~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~ 115 (411)
..|..+++.+.++.... +|+|+-....+...+.+....... ..+.........|.+.+...+..+.. .+.++.+.
T Consensus 16 ~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~d 91 (291)
T COG0463 16 EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD-VRVIRLINERNGGLGAARNAGLEYAR---GDYIVFLD 91 (291)
T ss_pred hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc-ceEEEeecccCCChHHHHHhhHHhcc---CCEEEEEc
Confidence 56677777777652222 466664433333334444322111 12333333455688888888777765 47888889
Q ss_pred CCcccCCC
Q 015225 116 CDVCCSFP 123 (411)
Q Consensus 116 ~D~i~~~~ 123 (411)
+|.. ..+
T Consensus 92 ~d~~-~~~ 98 (291)
T COG0463 92 ADDQ-HPP 98 (291)
T ss_pred cCCC-CCH
Confidence 9988 544
No 348
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=20.15 E-value=5.8e+02 Score=22.47 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=31.6
Q ss_pred ceEEeeCCCCCCChHHHHHHHHHhhccCCCeEEEEcCCccc-CCC-hHHHHHHHHhcCC
Q 015225 80 PVRYLKEDKPHGSAGGLYYFRDMIMEENPSHIILLNCDVCC-SFP-LPDLLEAHKRYGG 136 (411)
Q Consensus 80 ~i~~v~~~~~~g~~~~l~~~~~~i~~~~~~~~lv~~~D~i~-~~~-l~~~l~~~~~~~~ 136 (411)
.+.+.......+.+.++-.+++.-+ .+.++.++-|+.. +.+ +.++++.+++...
T Consensus 30 ~i~i~~~~~~~s~~~~yN~a~~~a~---~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 30 LIEIDNVRNAKSMAAAYNEAMEKAK---AKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp EEEEE-SSS-S-TTTHHHHHGGG-----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred EEEEeccCCCcCHHHHHHHHHHhCC---CCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 4555555555677777776666543 5678888999976 445 6777777744443
No 349
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=20.02 E-value=2.4e+02 Score=26.88 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=43.5
Q ss_pred hhHhHHHHhccCCCCcEEEEecccchHHHHHHHhhhcccCCc--ceEEeeCCCCCCC----hHHHHHHHHHhhccCCCeE
Q 015225 38 MIQHPISACKRIPNLAQIFLIGFYEEREFALYVSSISNELKV--PVRYLKEDKPHGS----AGGLYYFRDMIMEENPSHI 111 (411)
Q Consensus 38 li~~~l~~l~~~~gi~~I~Iv~~~~~~~i~~~~~~~~~~~~~--~i~~v~~~~~~g~----~~~l~~~~~~i~~~~~~~~ 111 (411)
++..+++.|.+.++++-.+++++.+.+.+.+.++. +++ ++.+.......+. +..+....+.+.+. .-++
T Consensus 15 ~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~pDi 89 (365)
T TIGR00236 15 KMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL----FHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEE-KPDI 89 (365)
T ss_pred HHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh----cCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHc-CCCE
Confidence 56777888887557888888888777666555544 333 2322221111122 23333344444432 3578
Q ss_pred EEEcCCcc
Q 015225 112 ILLNCDVC 119 (411)
Q Consensus 112 lv~~~D~i 119 (411)
+++.||..
T Consensus 90 v~~~gd~~ 97 (365)
T TIGR00236 90 VLVQGDTT 97 (365)
T ss_pred EEEeCCch
Confidence 88889873
Done!