BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015226
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JFR|A Chain A, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
pdb|1JFR|B Chain B, Crystal Structure Of The Streptomyces Exfoliatus Lipase At
1.9a Resolution: A Model For A Family Of Platelet-
Activating Factor Acetylhydrolases
Length = 262
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 240 GLAIILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSNDI 299
G I +P + G++V S G YQ S W G R ++ +N
Sbjct: 39 GGGTIYYPTSTADGTFGAVVIS------PGFTAYQSSIAWLGPRLASQGFVVFTIDTNTT 92
Query: 300 LDMPE 304
LD P+
Sbjct: 93 LDQPD 97
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 27/105 (25%)
Query: 86 VFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTW--------- 136
F L + +I A +G +L L+P+ G + ND+F + G W
Sbjct: 264 TFYFLNQLPAIIADNLGRSLERALAPL-------GVREWNDVFWVAHPGNWAIIDAIEAK 316
Query: 137 --------STIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGK 173
ST +H FT ++ ++ + + +MD+LR++ A +G+
Sbjct: 317 LQLSPDKLSTARHVFT---EYGNMQSATVYFVMDELRKRSAVEGR 358
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 27/105 (25%)
Query: 86 VFLILWPVVSIGASIIGGALYGFLSPIFATFDAVGEGKTNDIFHCFYDGTW--------- 136
F L + +I A +G +L L+P+ G + ND+F + G W
Sbjct: 264 TFYFLNQLPAIIADNLGRSLERALAPL-------GVREWNDVFWVAHPGNWAIIDAIEAK 316
Query: 137 --------STIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGK 173
ST +H FT ++ ++ + + +MD+LR++ A +G+
Sbjct: 317 LQLSPDKLSTARHVFT---EYGNMQSATVYFVMDELRKRSAVEGR 358
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 199 VISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSM 258
VI + + P + WH++FH + R ++G+ I LW L G +
Sbjct: 68 VIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLK--GRAMNQP 125
Query: 259 VTSIFLGAY--AGVVVYQESSLW 279
+ + G + GV Y S W
Sbjct: 126 IYQLLGGKFHTRGVRAYASSIYW 148
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 199 VISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSM 258
VI + + P + WH++FH + R ++G+ I LW L G +
Sbjct: 68 VIGPQLIGEDPANINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLK--GRAMNQP 125
Query: 259 VTSIFLGAY--AGVVVYQESSLW 279
+ + G + GV Y S W
Sbjct: 126 IYQLLGGKFHTRGVRAYASSIYW 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.143 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,218,727
Number of Sequences: 62578
Number of extensions: 420948
Number of successful extensions: 831
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 13
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)