Query 015226
Match_columns 411
No_of_seqs 44 out of 46
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 04:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06161 DUF975: Protein of un 47.8 66 0.0014 29.9 6.8 41 83-123 143-189 (243)
2 PF04911 ATP-synt_J: ATP synth 45.3 27 0.0006 27.7 3.2 32 244-298 9-40 (54)
3 PRK00523 hypothetical protein; 28.5 47 0.001 27.7 2.3 22 88-110 4-25 (72)
4 COG4859 Uncharacterized protei 25.2 23 0.00051 31.2 -0.0 9 290-298 50-58 (105)
5 COG3790 Predicted membrane pro 19.5 1E+02 0.0023 27.1 2.7 33 83-115 45-85 (97)
6 KOG3734 Predicted phosphoglyce 19.1 2.3E+02 0.0049 28.8 5.4 34 333-366 53-91 (272)
7 PRK10907 intramembrane serine 18.4 1.1E+02 0.0023 30.6 2.9 48 43-98 196-243 (276)
8 PRK00523 hypothetical protein; 18.0 1.6E+02 0.0035 24.7 3.4 26 240-265 1-26 (72)
9 PF04817 Umbravirus_LDM: Umbra 18.0 54 0.0012 32.6 0.8 30 106-135 131-160 (231)
10 PRK11234 nfrB bacteriophage N4 17.9 72 0.0016 35.8 1.8 40 339-380 666-706 (727)
No 1
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=47.78 E-value=66 Score=29.90 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=26.9
Q ss_pred HhhHHHHHHHHHHHhhHHHhhhhhhhhhhHhh------hhhhhccCc
Q 015226 83 CIPVFLILWPVVSIGASIIGGALYGFLSPIFA------TFDAVGEGK 123 (411)
Q Consensus 83 ~lP~~l~LW~vvgI~GSvl~G~gYGff~P~~a------TFeAvgeg~ 123 (411)
.....+.+|.+++++..++.+..|.+-..+++ .+||+++.+
T Consensus 143 ~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~ 189 (243)
T PF06161_consen 143 SLLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSR 189 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHH
Confidence 33344556667777777888888888766653 566665543
No 2
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=45.31 E-value=27 Score=27.74 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhceeEEEEeccchhhhHHHHHHHhhhhhhcccc
Q 015226 244 ILWPLAVVGAVLGSMVTSIFLGAYAGVVVYQESSLWFGLRYIIAALSIYDEYSND 298 (411)
Q Consensus 244 lLWPl~Vvgavl~si~sS~flG~yaaVVvYQE~S~~~GL~Yvva~va~fDEYtND 298 (411)
-+||+.+-|+|..--++|. | .+.+-=|||.||
T Consensus 9 P~wPFf~ag~iv~ygv~k~-----------~------------~a~~ns~E~~ND 40 (54)
T PF04911_consen 9 PMWPFFAAGAIVYYGVNKA-----------Q------------NAMMNSDEFKND 40 (54)
T ss_pred hhhHHHHHHHHHHHHHHHH-----------H------------HHHhcCHHHhcC
Confidence 3799999998876544443 2 233446999999
No 3
>PRK00523 hypothetical protein; Provisional
Probab=28.47 E-value=47 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhHHHhhhhhhhhh
Q 015226 88 LILWPVVSIGASIIGGALYGFLS 110 (411)
Q Consensus 88 l~LW~vvgI~GSvl~G~gYGff~ 110 (411)
+.+|..++|++ +++|+.-|||.
T Consensus 4 ~~l~I~l~i~~-li~G~~~Gffi 25 (72)
T PRK00523 4 IGLALGLGIPL-LIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 56888888888 88888888875
No 4
>COG4859 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.16 E-value=23 Score=31.15 Aligned_cols=9 Identities=56% Similarity=0.815 Sum_probs=7.0
Q ss_pred hhhhhcccc
Q 015226 290 SIYDEYSND 298 (411)
Q Consensus 290 a~fDEYtND 298 (411)
-+=|||+||
T Consensus 50 de~DeY~N~ 58 (105)
T COG4859 50 DETDEYTND 58 (105)
T ss_pred CcchhhccC
Confidence 456999997
No 5
>COG3790 Predicted membrane protein [Function unknown]
Probab=19.51 E-value=1e+02 Score=27.07 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=28.1
Q ss_pred HhhHHHHHHHHHHHhhHHHhhhhh--------hhhhhHhhh
Q 015226 83 CIPVFLILWPVVSIGASIIGGALY--------GFLSPIFAT 115 (411)
Q Consensus 83 ~lP~~l~LW~vvgI~GSvl~G~gY--------Gff~P~~aT 115 (411)
.+|++..+..+-++.-+++-|+|+ |+|+|+.|-
T Consensus 45 s~~a~~~llmiWavca~~IhGVGFrpr~~~wqg~FsPlla~ 85 (97)
T COG3790 45 SLEAWHGLLMIWAVCAGVIHGVGFRPRSVLWQGIFSPLLAD 85 (97)
T ss_pred CchHHHHHHHHHHHHHHHHhcccCchHHHHHHHHhhhHHHH
Confidence 467888888888999999999997 899998873
No 6
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=19.06 E-value=2.3e+02 Score=28.76 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCCCCCCccccce-----eccchHHHhhhhhhhHhcCCC
Q 015226 333 DPPSRTSSLRKPI-----DLKPLEECQRHGEIWVSEGLI 366 (411)
Q Consensus 333 ~~~~~s~S~k~~i-----e~k~~k~ce~~G~~Ll~~G~I 366 (411)
..+||+||.+.== -.-++..|++.||+|+++|..
T Consensus 53 ~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a~~~ 91 (272)
T KOG3734|consen 53 RLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNAGIA 91 (272)
T ss_pred cccccccCcccCccCCCccchhHHHHHHHHHHHHhcCCC
Confidence 3567777776432 222348899999999999986
No 7
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=18.45 E-value=1.1e+02 Score=30.57 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=25.4
Q ss_pred hhccceeEEEeeccchhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHHHHHHHhh
Q 015226 43 MTIGNSAIILGLLPAHVLWTYYCILRAKQLGPVLKLLTCICIPVFLILWPVVSIGA 98 (411)
Q Consensus 43 i~iGnsaVilgLwP~Hv~WTyyci~rtkr~g~~lK~l~li~lP~~l~LW~vvgI~G 98 (411)
...|-|+|+-||.=. .|.+. .|.+..+..+. -.+-+..++|+++|..+
T Consensus 196 ~~gGaSGvVygL~g~--~~~~~--~~~p~~~~~lp----~~~~~f~llwl~~g~~~ 243 (276)
T PRK10907 196 WFGGLSGVVYALMGY--VWLRG--ERDPQSGIYLP----RGLIAFALLWLVAGYFD 243 (276)
T ss_pred hhhHHHHHHHHHHHH--HHHHh--ccccccchhhh----HHHHHHHHHHHHHHHHH
Confidence 467999999988762 34332 22222232221 12224566788766543
No 8
>PRK00523 hypothetical protein; Provisional
Probab=18.01 E-value=1.6e+02 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015226 240 GLAIILWPLAVVGAVLGSMVTSIFLG 265 (411)
Q Consensus 240 GLaIlLWPl~Vvgavl~si~sS~flG 265 (411)
|+++-+|=+.++.+.+.+.+..||++
T Consensus 1 ~~~~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 1 GLAIGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776666654
No 9
>PF04817 Umbravirus_LDM: Umbravirus long distance movement (LDM) family ; InterPro: IPR006902 The long distance movement protein of Umbraviruses mediates the movement of viral RNA through the phloem of infected plants [].
Probab=17.96 E-value=54 Score=32.57 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.5
Q ss_pred hhhhhhHhhhhhhhccCcccceEEEEeeCc
Q 015226 106 YGFLSPIFATFDAVGEGKTNDIFHCFYDGT 135 (411)
Q Consensus 106 YGff~P~~aTFeAvgeg~~~k~~HCf~DGT 135 (411)
-||+.||+.||+-.++|...-|.||+=+..
T Consensus 131 dglLspLLdt~~g~~~g~a~~ll~~i~a~R 160 (231)
T PF04817_consen 131 DGLLSPLLDTLDGQGWGPAAVLLYCIGALR 160 (231)
T ss_pred hhhhHHHHHHHhccccCChhhhhccchhhh
Confidence 479999999999999999999999986553
No 10
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=17.92 E-value=72 Score=35.80 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.4
Q ss_pred Cccccce-eccchHHHhhhhhhhHhcCCCChhchHHHHhCCCC
Q 015226 339 SSLRKPI-DLKPLEECQRHGEIWVSEGLITAKDIEDAKSNSGS 380 (411)
Q Consensus 339 ~S~k~~i-e~k~~k~ce~~G~~Ll~~G~It~~Diee~~~~k~~ 380 (411)
..+.+.+ +.++ +=+.-|+.|++.|+||.++|+|++....+
T Consensus 666 ~~l~~aL~~~~~--~~~~lG~~Lv~~g~it~~~l~~aL~~Q~~ 706 (727)
T PRK11234 666 SAINVLLLRHER--SSLPLGKFLVTEGVISQETLDRALTIQRE 706 (727)
T ss_pred HHHHHHHHHhcc--cCCcHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3444445 5555 33478999999999999999999988754
Done!