Query 015226
Match_columns 411
No_of_seqs 44 out of 46
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oqj_C Peptide 2G12.1 (ACPPSHV 45.7 4.9 0.00017 26.5 0.2 14 297-310 5-18 (26)
2 2d28_C XPSE, type II secretion 31.1 14 0.00047 30.2 0.8 24 355-378 9-32 (149)
3 1srz_A Gamma-aminobutyric acid 27.4 28 0.00096 25.3 1.8 20 126-146 49-68 (68)
4 3ktz_A Ribosome-inactivating p 24.0 35 0.0012 32.1 2.2 40 144-183 4-43 (251)
5 4aor_D Trypsin inhibitor 3; hy 21.1 20 0.00067 25.4 -0.1 15 301-315 19-33 (37)
6 2k5n_A Putative cold-shock pro 15.0 35 0.0012 26.5 0.0 16 105-129 15-30 (74)
7 2job_A Antilipopolysaccharide 14.3 74 0.0025 27.0 1.8 23 355-377 80-102 (102)
8 1spf_A Pulmonary surfactant-as 13.7 1.9E+02 0.0065 20.3 3.5 26 76-104 10-35 (35)
9 2d28_C XPSE, type II secretion 13.6 82 0.0028 25.5 1.9 23 356-378 39-61 (149)
10 2yra_A Seizure 6-like protein 13.0 61 0.0021 23.7 0.9 21 126-146 46-66 (74)
No 1
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=45.66 E-value=4.9 Score=26.49 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=11.6
Q ss_pred cccccCCCCCcCCC
Q 015226 297 NDILDMPEGSCFPR 310 (411)
Q Consensus 297 ND~LylrEGScfPR 310 (411)
..+||||.|+|+-.
T Consensus 5 shvldmrsgtclaa 18 (26)
T 2oqj_C 5 SHVLDMRSGTCLAA 18 (26)
T ss_pred hheeeccCCceEee
Confidence 35899999999864
No 2
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=31.06 E-value=14 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=19.8
Q ss_pred hhhhhhHhcCCCChhchHHHHhCC
Q 015226 355 RHGEIWVSEGLITAKDIEDAKSNS 378 (411)
Q Consensus 355 ~~G~~Ll~~G~It~~Diee~~~~k 378 (411)
.-|+.|+++|+||.+++++++...
T Consensus 9 ~lg~~Lv~~g~it~~ql~~al~~~ 32 (149)
T 2d28_C 9 RIVEALLERRRLKDTDLVRARQLQ 32 (149)
T ss_dssp HHHHHHHHTTSSCHHHHHHCCC--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 358999999999999999987654
No 3
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=27.44 E-value=28 Score=25.29 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.4
Q ss_pred ceEEEEeeCccceeeeeeEEE
Q 015226 126 DIFHCFYDGTWSTIKHSFTIV 146 (411)
Q Consensus 126 k~~HCf~DGTwsTI~gSCTVV 146 (411)
+..+|- ||+||.-.-.|..|
T Consensus 49 ~~~~C~-~g~Ws~~~P~C~~i 68 (68)
T 1srz_A 49 SRSVCS-QGQWSTPKPHCQVN 68 (68)
T ss_dssp CEEEEE-TTEESSCCCCEEEC
T ss_pred CcCEEC-CCEEeCCCCEeeEC
Confidence 578998 99999887788654
No 4
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase, disulfide bond, glycoprotein, hydrolase, plant defense; HET: NAG; 1.60A {Gelonium multiflorum} SCOP: d.165.1.0 PDB: 3ku0_A*
Probab=23.96 E-value=35 Score=32.06 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=30.7
Q ss_pred EEEeeccccccccchhhhHHHhhcCCCCCceeEEEEecch
Q 015226 144 TIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIP 183 (411)
Q Consensus 144 TVVrDf~D~cfHSYfs~mdeLr~~~~~~~~p~eIrL~~lP 183 (411)
||.=|...-.--+|-++|++||+.+.+..+.++|.++.-|
T Consensus 4 ~v~f~~~~at~~~Y~~FI~~LR~~l~~~~~~~~iPvL~~~ 43 (251)
T 3ktz_A 4 TVSFSTKGATYITYVNFLNELRVKLKPEGNSHGIPLLRKK 43 (251)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTCCCSEETTEEBCCSC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHhccCCccCCceecCCC
Confidence 3444554445578999999999999877778899998775
No 5
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=21.13 E-value=20 Score=25.43 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.8
Q ss_pred cCCCCCcCCCccccc
Q 015226 301 DMPEGSCFPRPQYRK 315 (411)
Q Consensus 301 ylrEGScfPRP~YRk 315 (411)
|--.|||.|.|+-|-
T Consensus 19 ~ccsg~cvphp~lri 33 (37)
T 4aor_D 19 QCCSGACVPHPILRI 33 (37)
T ss_dssp GBTTSCEEECSSBSS
T ss_pred ccccccccCCCeeEE
Confidence 345699999999883
No 6
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=15.02 E-value=35 Score=26.52 Aligned_cols=16 Identities=31% Similarity=0.727 Sum_probs=11.4
Q ss_pred hhhhhhhHhhhhhhhccCcccceEE
Q 015226 105 LYGFLSPIFATFDAVGEGKTNDIFH 129 (411)
Q Consensus 105 gYGff~P~~aTFeAvgeg~~~k~~H 129 (411)
||||++|- +|.++ |+|
T Consensus 15 GfGFI~~~--------dg~~d-FvH 30 (74)
T 2k5n_A 15 GFGFIKDE--------NGDNR-YFH 30 (74)
T ss_dssp TEEEEEES--------SSCEE-EEE
T ss_pred CeEEEecC--------CCCce-EEE
Confidence 78888872 45566 887
No 7
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=14.33 E-value=74 Score=27.01 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=18.7
Q ss_pred hhhhhhHhcCCCChhchHHHHhC
Q 015226 355 RHGEIWVSEGLITAKDIEDAKSN 377 (411)
Q Consensus 355 ~~G~~Ll~~G~It~~Diee~~~~ 377 (411)
.-=|.-++.|+||.+|-+.|+++
T Consensus 80 DFV~KA~~~gLiT~edA~~wL~~ 102 (102)
T 2job_A 80 DFVRKAFQKGLISQQEANQWLSS 102 (102)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHC
T ss_pred HHHHHHHHcCCccHHHHHHHhhC
Confidence 33456678999999999999974
No 8
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=13.72 E-value=1.9e+02 Score=20.31 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhHHHhhh
Q 015226 76 LKLLTCICIPVFLILWPVVSIGASIIGGA 104 (411)
Q Consensus 76 lK~l~li~lP~~l~LW~vvgI~GSvl~G~ 104 (411)
+|=++++.+-+ ...++-|+|.+++|+
T Consensus 10 lKrLlivVvVv---VlvVvVivGaLLmGL 35 (35)
T 1spf_A 10 LKRLLVVVVVV---VLVVVVIVGALLMGL 35 (35)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHCC
T ss_pred hheEEEEEeee---hhhHHHHHHHHHccC
Confidence 55555554433 345778999999985
No 9
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=13.63 E-value=82 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.9
Q ss_pred hhhhhHhcCCCChhchHHHHhCC
Q 015226 356 HGEIWVSEGLITAKDIEDAKSNS 378 (411)
Q Consensus 356 ~G~~Ll~~G~It~~Diee~~~~k 378 (411)
-|+.|++.|.+|.+|+-++++..
T Consensus 39 l~~~L~~~g~i~e~~l~~~la~~ 61 (149)
T 2d28_C 39 LLALLGRLGLVSERDHAETCAEV 61 (149)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh
Confidence 38899999999999999998875
No 10
>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain, SCR, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.97 E-value=61 Score=23.70 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.8
Q ss_pred ceEEEEeeCccceeeeeeEEE
Q 015226 126 DIFHCFYDGTWSTIKHSFTIV 146 (411)
Q Consensus 126 k~~HCf~DGTwsTI~gSCTVV 146 (411)
+-.+|--||+||--.-.|..|
T Consensus 46 ~~~~C~~~g~Ws~~~P~C~~v 66 (74)
T 2yra_A 46 DTLTCQWDLSWSSDPPFCEKT 66 (74)
T ss_dssp SEEEBCTTSCBSSCCCEEEEC
T ss_pred CceEECCCCEECCCCCEEeec
Confidence 568999999999877888765
Done!