BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015227
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
           5,10-Methylenetetrahydrofolate Dehydrogenase
           CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
 pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
           5,10-Methylenetetrahydrofolate Dehydrogenase
           CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
 pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
           5,10-Methylenetetrahydrofolate Dehydrogenase
           CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
 pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
           5,10-Methylenetetrahydrofolate Dehydrogenase
           CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
          Length = 276

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 37  EEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSS-- 94
           ++ +A   +  G   L R   +P     ++ ++    Y E +VT V   PV+ +PLS   
Sbjct: 111 KDVDALSPYNQGLIALNREFLVPATPRAVIDIMDYYGYHENTVTIVNRSPVVGRPLSMML 170

Query: 95  -NRYYVI---RAKGKYKGKTCKSSRETEVGM 121
            NR Y +    +K K  G   +SS+   V +
Sbjct: 171 LNRNYTVSVCHSKTKDIGSMTRSSKIVVVAV 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,702,572
Number of Sequences: 62578
Number of extensions: 378923
Number of successful extensions: 920
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 1
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)