Query 015227
Match_columns 411
No_of_seqs 66 out of 68
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06880 DUF1262: Protein of u 100.0 6.1E-58 1.3E-62 387.8 10.8 101 25-125 1-104 (104)
2 PF05431 Toxin_10: Insecticida 96.7 0.006 1.3E-07 58.2 8.1 50 219-268 24-74 (199)
3 COG1646 Predicted phosphate-bi 42.5 22 0.00048 35.4 2.9 83 78-172 86-186 (240)
4 COG1613 Sbp ABC-type sulfate t 28.2 47 0.001 34.7 2.7 70 143-241 69-140 (348)
5 PF04315 DUF462: Protein of un 27.2 34 0.00074 32.4 1.4 39 206-266 57-96 (164)
6 PF15524 Toxin_45: Putative to 25.2 39 0.00084 29.2 1.3 14 20-33 29-42 (94)
7 KOG1973 Chromatin remodeling p 23.7 25 0.00055 34.8 -0.1 6 229-234 258-263 (274)
8 COG5034 TNG2 Chromatin remodel 21.5 33 0.00071 34.8 0.1 24 103-127 205-228 (271)
9 PTZ00320 ribosomal protein L14 18.4 1.5E+02 0.0032 28.9 3.8 92 30-150 33-132 (188)
10 PF14200 RicinB_lectin_2: Rici 16.7 5.8E+02 0.012 20.7 7.0 55 95-161 14-70 (105)
No 1
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.
Probab=100.00 E-value=6.1e-58 Score=387.75 Aligned_cols=101 Identities=56% Similarity=0.924 Sum_probs=98.1
Q ss_pred CCCCceEEEEEcccccccCceeeeecccCcccCCCCCCcceEEEEEecCc---cceeeeeEEEeecCCCCCCCCceEEEE
Q 015227 25 EGPYSGILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDY---QETSVTKVWFLPVLDQPLSSNRYYVIR 101 (411)
Q Consensus 25 eGPnSG~LVI~Dee~~~~~t~CfGlc~~~~v~~LPFPQN~~LtV~~~~~g---~~t~~d~V~FIPVl~QPLSSNrYYvi~ 101 (411)
||||||||||||||+++.+|||||+|++++|++||||||++|||+|+++. ++||.|+|||||||||||||||||||+
T Consensus 1 EGPnSG~LVIqDee~~~~~t~CfG~c~~~~v~~LPFPQN~~Ltv~~~~~~~~~~~t~~d~V~FIPVl~QPLSSnrYYvi~ 80 (104)
T PF06880_consen 1 EGPNSGYLVIQDEEAETTETCCFGLCKDTRVRGLPFPQNKNLTVRYSSGHGENTTTYSDPVVFIPVLNQPLSSNRYYVIR 80 (104)
T ss_pred CCCCceEEEEEccccCccccEEeeEcCCCccccCCCCCCCEEEEEEccCCCccceeecccEEEEEcCCCcCcCCcEEEEE
Confidence 89999999999999999888999999999999999999999999998873 678999999999999999999999999
Q ss_pred ecceecceeecccccccceeeEee
Q 015227 102 AKGKYKGKTCKSSRETEVGMCCFS 125 (411)
Q Consensus 102 ~~Gkh~G~a~~~skEeD~~tcCf~ 125 (411)
|+|||+|+|+||||||||++||||
T Consensus 81 ~~Gkh~G~a~~~skEeD~~tcCFC 104 (104)
T PF06880_consen 81 RKGKHKGEASACSKEEDMTTCCFC 104 (104)
T ss_pred ecccccceeeccccccccceeecC
Confidence 999999999999999999999998
No 2
>PF05431 Toxin_10: Insecticidal Crystal Toxin, P42 ; InterPro: IPR008872 This domain consists of Bacillus insecticidal crystal toxins. Strains of Bacillus that have this insecticidal activity use a binary toxin comprised of two proteins, P51 and P42 (this entry). Members of this are highly conserved between strains of different serotypes and phage groups [].; GO: 0009405 pathogenesis
Probab=96.74 E-value=0.006 Score=58.23 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=44.4
Q ss_pred CCCCCceeEeeeeeceeEEeecC-cchhhhhhhcceeeehhhhhhheeeee
Q 015227 219 TNKRSSVSIVGKWYCPFVFVREE-SRIRHQMRKSVLYKMTLQQWWEKIFSC 268 (411)
Q Consensus 219 s~~~S~svvVGkWYcPFmFVKEg-~~lkdQmk~S~fYeMTLeQrWEeifsc 268 (411)
....+.+++||.=-.|||+|++- .++..||+.|-||-+.=+|.|+.+-+-
T Consensus 24 ~P~~~~~~v~G~tLIP~imVnDp~~~~~~qi~~sPYY~l~k~qyW~~~~~~ 74 (199)
T PF05431_consen 24 LPQQTPRAVVGWTLIPCIMVNDPVISLSTQIKNSPYYVLKKYQYWHRVWSS 74 (199)
T ss_pred CcccCcceeeeeeeEEEEEEeCCCCChhceecCCceEEEeehhhHHHHhhc
Confidence 34456899999999999999995 789999999999999999999988664
No 3
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.51 E-value=22 Score=35.41 Aligned_cols=83 Identities=27% Similarity=0.385 Sum_probs=60.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecceecceeecccc--ccc--ceeeEe-----eccccCCCCCCCCccCc-------
Q 015227 78 SVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSSR--ETE--VGMCCF-----SNVVKDMKPKPFDFRNI------- 141 (411)
Q Consensus 78 ~~d~V~FIPVl~QPLSSNrYYvi~~~Gkh~G~a~~~sk--EeD--~~tcCf-----~~~v~d~kPrp~Dp~di------- 141 (411)
+.|.+.|.-||| |.|.||++.+.=+ | |-.-.+ +|- +.-||+ --.+.+++|.|+|..|+
T Consensus 86 ~aDavff~svLN---S~n~~~i~gaq~~--~-a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la 159 (240)
T COG1646 86 YADAVFFPSVLN---SDNPYWIVGAQVE--G-AKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALA 159 (240)
T ss_pred cCCeEEEEEEec---CCCcccccchhhh--h-hHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHH
Confidence 678999999999 8999999965311 1 111111 332 233554 15689999999999887
Q ss_pred --ceeEEEEEeccCceEEEeecCCCCCCchhhh
Q 015227 142 --YQQFKIHRYHRHSFFATSAATTDGLPPKFLR 172 (411)
Q Consensus 142 --YQQfeI~~~~~~~F~A~SVA~pDG~PP~fLr 172 (411)
|=+|.|. ++-|-|-| ||=.||.-.+
T Consensus 160 ~~~~g~~~~-----YlEagsga-~~Pv~~e~v~ 186 (240)
T COG1646 160 EKYLGMPVV-----YLEAGSGA-GDPVPVEMVS 186 (240)
T ss_pred HHHhCCeEE-----EEEecCCC-CCCcCHHHHH
Confidence 7788888 78889999 9999998875
No 4
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.17 E-value=47 Score=34.66 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=48.5
Q ss_pred eeEEEEEeccC-ceEEEeecCCCCCCchhhhccceEEEeecCCccccccccCcCccccccC-CChhhhhcCCCCCCCCCC
Q 015227 143 QQFKIHRYHRH-SFFATSAATTDGLPPKFLRKKGWELRSSSSSSRSFLRRWNNDKLSEALG-LDISLRTQLPSLNFPITN 220 (411)
Q Consensus 143 QQfeI~~~~~~-~F~A~SVA~pDG~PP~fLr~kgW~v~~S~~~~~~f~~~~~~~~l~eA~G-ld~~LR~~lPd~~fp~s~ 220 (411)
|-+.|.|.++| |=.|+||. ||++-... ..+-. + |-+.|-++-| ++..-+.+||+.+-|
T Consensus 69 ~~Vti~qShGGSgkQaRsVi--DGl~ADVV-------tlal~----~----Did~i~~~g~li~~dW~~rlp~ns~P--- 128 (348)
T COG1613 69 ETVTIQQSHGGSGKQARSVI--DGLEADVV-------TLALA----Y----DIDAIAKAGGLIDKDWQKRLPNNSAP--- 128 (348)
T ss_pred CceEEEecCCCcchhhHhhc--cCccccee-------eeehh----h----hHHHHHHhcCCCCcchHhhCcCCCCC---
Confidence 45678888764 89999998 99998754 22222 2 2334778886 588889999995433
Q ss_pred CCCceeEeeeeeceeEEeecC
Q 015227 221 KRSSVSIVGKWYCPFVFVREE 241 (411)
Q Consensus 221 ~~S~svvVGkWYcPFmFVKEg 241 (411)
..|++| +.|+.|
T Consensus 129 --ytStiv-------FlVRkG 140 (348)
T COG1613 129 --YTSTIV-------FLVRKG 140 (348)
T ss_pred --ccceEE-------EEEecC
Confidence 356666 567777
No 5
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=27.17 E-value=34 Score=32.42 Aligned_cols=39 Identities=28% Similarity=0.568 Sum_probs=24.7
Q ss_pred hhhhcCCCCCCCCCCCCCceeEeeeeeceeEEeecCcchhhhhhhcceeeehhh-hhhheee
Q 015227 206 SLRTQLPSLNFPITNKRSSVSIVGKWYCPFVFVREESRIRHQMRKSVLYKMTLQ-QWWEKIF 266 (411)
Q Consensus 206 ~LR~~lPd~~fp~s~~~S~svvVGkWYcPFmFVKEg~~lkdQmk~S~fYeMTLe-QrWEeif 266 (411)
+-|+.|+|++ =|||| +|++...|- .|-..-.. |--|-+|
T Consensus 57 ~~RR~l~DfG--------------YWY~P-----DGR~~~qQ~---~FE~VEvkPQAlEw~f 96 (164)
T PF04315_consen 57 PERRQLEDFG--------------YWYCP-----DGRDAEQQA---EFEQVEVKPQALEWLF 96 (164)
T ss_pred ccccccccCC--------------CCcCC-----CCCCHHHHH---HHHhhhhchHHHHHHH
Confidence 4588888885 59999 787766663 34433322 4555555
No 6
>PF15524 Toxin_45: Putative toxin 45
Probab=25.20 E-value=39 Score=29.21 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.1
Q ss_pred CCCCCCCCCceEEE
Q 015227 20 ELPPQEGPYSGILL 33 (411)
Q Consensus 20 ~~pPPeGPnSG~LV 33 (411)
..|.|-|||.|||=
T Consensus 29 s~~Lprgp~nGyvD 42 (94)
T PF15524_consen 29 SRPLPRGPNNGYVD 42 (94)
T ss_pred cCccCCCCCCcchh
Confidence 37899999999984
No 7
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=23.73 E-value=25 Score=34.76 Aligned_cols=6 Identities=100% Similarity=2.821 Sum_probs=5.4
Q ss_pred eeeece
Q 015227 229 GKWYCP 234 (411)
Q Consensus 229 GkWYcP 234 (411)
||||||
T Consensus 258 gkWyC~ 263 (274)
T KOG1973|consen 258 GKWYCP 263 (274)
T ss_pred Ccccch
Confidence 789999
No 8
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=21.52 E-value=33 Score=34.77 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=17.3
Q ss_pred cceecceeecccccccceeeEeecc
Q 015227 103 KGKYKGKTCKSSRETEVGMCCFSNV 127 (411)
Q Consensus 103 ~Gkh~G~a~~~skEeD~~tcCf~~~ 127 (411)
.+||.| ++-.--|||...-|||.-
T Consensus 205 s~~~~~-vss~d~se~e~lYCfCqq 228 (271)
T COG5034 205 STKSRG-VSSEDNSEGEELYCFCQQ 228 (271)
T ss_pred CccccC-cCccccccCceeEEEecc
Confidence 456666 554555889999999974
No 9
>PTZ00320 ribosomal protein L14; Provisional
Probab=18.45 E-value=1.5e+02 Score=28.85 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=63.1
Q ss_pred eEEEEEcccccccCceeeeecccCcccCCCCCCcceEEEEEecCccceeeeeEEEeecCCCCCCCCceEEEEecceecce
Q 015227 30 GILLITDEEAEAEDTFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGK 109 (411)
Q Consensus 30 G~LVI~Dee~~~~~t~CfGlc~~~~v~~LPFPQN~~LtV~~~~~g~~t~~d~V~FIPVl~QPLSSNrYYvi~~~Gkh~G~ 109 (411)
.-|+|.-..+- .+-||...+..=.|.||.....|.|.+++| ...|.-|=|| +++=|+ +-|
T Consensus 33 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~qT~L~VaDNSG-----AK~V~CIkVl-----~~rr~A------~IG- 92 (188)
T PTZ00320 33 HNLIIRRKASY---RSRWGTGAEGYGTGVPFSDQVKLHCVDNTN-----CKHVRLISKA-----TAERFA------HCR- 92 (188)
T ss_pred heeEEeecchh---hhccccCccccccCCccCCCcEEEEEeCCC-----CcEEEEEEEe-----cCCCce------eec-
Confidence 34677654432 455999888888999999999999999999 6788999998 444222 122
Q ss_pred eecccccccc-eeeEeeccccCCCCCC-------CCccCcceeEEEEEe
Q 015227 110 TCKSSRETEV-GMCCFSNVVKDMKPKP-------FDFRNIYQQFKIHRY 150 (411)
Q Consensus 110 a~~~skEeD~-~tcCf~~~v~d~kPrp-------~Dp~diYQQfeI~~~ 150 (411)
|+ ..-.-++ |.+++|+. .-..|||--+-|.++
T Consensus 93 --------Di~~~~IvVs-VKka~P~~~~~~~~kVKKG~V~kAVIVRTK 132 (188)
T PTZ00320 93 --------VFPAVAHRVS-VQRFKSGRGEVSRHRVKPGNIYWVCLLSRR 132 (188)
T ss_pred --------cccCceEEEE-EeecccCccccccCceecCCEEEEEEEEEC
Confidence 22 0111233 67887743 677788887777665
No 10
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=16.73 E-value=5.8e+02 Score=20.67 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=32.8
Q ss_pred CceEEEEecceecceeecccc--cccceeeEeeccccCCCCCCCCccCcceeEEEEEeccCceEEEeec
Q 015227 95 NRYYVIRAKGKYKGKTCKSSR--ETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFATSAA 161 (411)
Q Consensus 95 NrYYvi~~~Gkh~G~a~~~sk--EeD~~tcCf~~~v~d~kPrp~Dp~diYQQfeI~~~~~~~F~A~SVA 161 (411)
+.||.|+.. +.|++-.... -++-+..+...+ + .+.-||++|.+...+.|.-+++.
T Consensus 14 ~g~Y~i~n~--~sg~~L~v~~~~~~~g~~v~~~~~---------~-~~~~Q~W~i~~~~~g~y~I~n~~ 70 (105)
T PF14200_consen 14 DGYYKIRNV--NSGKYLDVAGGSTANGTNVQQWTC---------N-GNDNQQWKIEPVGDGYYRIRNKN 70 (105)
T ss_dssp TTEEEEEET--TTTEEEEEGCTTCSTTEBEEEEES---------S-SSGGGEEEEEESTTSEEEEEETS
T ss_pred CCEEEEEEC--CCCCEEEeCCCCcCCCcEEEEecC---------C-CCcCcEEEEEEecCCeEEEEECC
Confidence 567777654 4565544432 234445555543 1 16789999997655556666665
Done!