Query 015227
Match_columns 411
No_of_seqs 66 out of 68
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e6q_A Obscurin-like protein 1 33.8 37 0.0013 27.5 3.8 38 89-126 44-93 (112)
2 4ev1_A Anabena TIC22; TIC22 fo 28.5 11 0.00039 35.9 -0.2 19 223-241 146-167 (252)
3 1v8h_A Sulfur oxidation protei 20.9 2.7E+02 0.0093 22.9 6.8 59 48-114 32-90 (107)
4 3pg0_A Threefoil; symmetric de 16.6 3.8E+02 0.013 22.0 6.9 69 80-161 12-82 (165)
5 2oxg_Z SOXZ protein; immunoglo 15.2 3E+02 0.01 22.7 5.8 59 48-114 33-91 (108)
6 1r8o_A STI, kunitz trypsin inh 14.4 1.3E+02 0.0045 24.5 3.3 27 89-115 7-36 (96)
7 3mhp_C TIC62_peptide, ferredox 12.6 1.3E+02 0.0043 20.0 2.2 14 3-16 2-15 (26)
8 3lph_A Protein REV; helix-loop 11.3 71 0.0024 25.6 0.8 13 9-27 24-36 (72)
9 3bsu_A Ribonuclease H1, RNAse 11.0 1.1E+02 0.0037 22.5 1.7 17 94-112 2-18 (53)
10 1wba_A Winged bean albumin 1; 10.6 1.5E+02 0.005 26.6 2.7 29 86-115 4-36 (175)
No 1
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.84 E-value=37 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCCCCCc----------eEEEEecceecceeeccccccccee--eEeec
Q 015227 89 DQPLSSNR----------YYVIRAKGKYKGKTCKSSRETEVGM--CCFSN 126 (411)
Q Consensus 89 ~QPLSSNr----------YYvi~~~Gkh~G~a~~~skEeD~~t--cCf~~ 126 (411)
++||.++. -|.|...|.+.-+.-.+...+|.+. ||-|.
T Consensus 44 G~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~ 93 (112)
T 2e6q_A 44 GEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCP 93 (112)
T ss_dssp SCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEET
T ss_pred CEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEEC
Confidence 57787776 7888888866567777888888888 66674
No 2
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=28.47 E-value=11 Score=35.89 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=14.9
Q ss_pred CceeEe---eeeeceeEEeecC
Q 015227 223 SSVSIV---GKWYCPFVFVREE 241 (411)
Q Consensus 223 S~svvV---GkWYcPFmFVKEg 241 (411)
..++-- |+||+||+|=||.
T Consensus 146 ~Lti~~~~~~~~~iPlFF~Ked 167 (252)
T 4ev1_A 146 YVPIKVGTGNEQVVPLFLSKQD 167 (252)
T ss_dssp BCCEEETTTTEEEEEEESSHHH
T ss_pred cEEEEeCCCCCEEEeeEecHHH
Confidence 344555 4999999999996
No 3
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=20.89 E-value=2.7e+02 Score=22.85 Aligned_cols=59 Identities=17% Similarity=0.022 Sum_probs=44.9
Q ss_pred eecccCcccCCCCCCcceEEEEEecCccceeeeeEEEeecCCCCCCCCceEEEEecceecceeeccc
Q 015227 48 GTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSS 114 (411)
Q Consensus 48 Glc~~~~v~~LPFPQN~~LtV~~~~~g~~t~~d~V~FIPVl~QPLSSNrYYvi~~~Gkh~G~a~~~s 114 (411)
|+-+|. .++..|-.-+=+|.-.- .+..+|==-+++.+|.|-|.....+|..+|.+.+..
T Consensus 32 Gl~~D~--~g~~iPa~~I~~v~~~~------ng~~v~~~~~~~~iS~nP~~~F~~~~~~~g~l~v~~ 90 (107)
T 1v8h_A 32 GTRRDA--EGKLIPAKYINLVEVYF------EGEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKL 90 (107)
T ss_dssp SCCBCT--TSCBCCCBCEEEEEEEE------TTEEEEEECCCSSCCSSCEEEEEEECCSCEEEEEEE
T ss_pred cccccc--cCCcCchHheEEEEEEE------CCEEEEEEEeCCccccCCeEEEEEecCCCceEEEEE
Confidence 777777 58899988655554332 247788888999999999999999888788765544
No 4
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Probab=16.61 E-value=3.8e+02 Score=21.96 Aligned_cols=69 Identities=9% Similarity=-0.010 Sum_probs=26.6
Q ss_pred eeEEEeecCCCCCCCCceEEEEecceecceeeccc--ccccceeeEeeccccCCCCCCCCccCcceeEEEEEeccCceEE
Q 015227 80 TKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSS--RETEVGMCCFSNVVKDMKPKPFDFRNIYQQFKIHRYHRHSFFA 157 (411)
Q Consensus 80 d~V~FIPVl~QPLSSNrYYvi~~~Gkh~G~a~~~s--kEeD~~tcCf~~~v~d~kPrp~Dp~diYQQfeI~~~~~~~F~A 157 (411)
..-+++|+.-.|++.+.|.++.+ +.|+.-..+ ...+-+.--...| +- .-.|||.|.....+.|.-
T Consensus 12 ~~~~~~~~~~~~~~~g~y~i~n~---~sg~cLdv~~~~~~~g~~v~~~~c---------~~-~~~Q~W~~~~~~~g~y~i 78 (165)
T 3pg0_A 12 HHSSGLVPRGSHMGDGYYKLVAR---HSGKALDVENASTSDGANVIQYSY---------SG-GDNQQWRLVDLGDGYYKL 78 (165)
T ss_dssp --------------CCEEEEEET---TTCCEEEEGGGCCSTTCBEEEECC---------CC-CGGGCEEEEEEETTEEEE
T ss_pred hhhccccccceECCCCEEEEEEC---CCCCEEEeCCCCCCCCCEEEEECC---------CC-CccceEEEEECCCCEEEE
Confidence 35567777788888776655543 345432211 1223333333333 11 238999998665545555
Q ss_pred Eeec
Q 015227 158 TSAA 161 (411)
Q Consensus 158 ~SVA 161 (411)
++++
T Consensus 79 ~~~~ 82 (165)
T 3pg0_A 79 VARH 82 (165)
T ss_dssp EETT
T ss_pred EECC
Confidence 5544
No 5
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=15.16 E-value=3e+02 Score=22.71 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=44.3
Q ss_pred eecccCcccCCCCCCcceEEEEEecCccceeeeeEEEeecCCCCCCCCceEEEEecceecceeeccc
Q 015227 48 GTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSS 114 (411)
Q Consensus 48 Glc~~~~v~~LPFPQN~~LtV~~~~~g~~t~~d~V~FIPVl~QPLSSNrYYvi~~~Gkh~G~a~~~s 114 (411)
|+-+|. .++..|-.-+=+|.-.-+ +..+|==-+++++|.|-|.....+|..+|.+.+..
T Consensus 33 Gl~~d~--~g~~IPa~~I~~v~~~~n------g~~v~~~~~~~~iS~NP~~~F~~~~~~~g~l~v~~ 91 (108)
T 2oxg_Z 33 GQRKDA--DGKLIPRSIINRFTCELN------GVNVVDVAIDPAVSTNPYFEFDAKVDAAGEFKFTW 91 (108)
T ss_dssp SCCBCT--TSCBCCCBCEEEEEEEET------TEEEEEEEECTTBCSSCEEEEEEEECSSEEEEEEE
T ss_pred ccccCc--CCCccchHheEEEEEEEC------CEEEEEEEeCCccccCCeEEEEEecCCCcEEEEEE
Confidence 777777 389999986555543322 46777778899999999999998887788766554
No 6
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=14.36 E-value=1.3e+02 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=17.6
Q ss_pred CCCC-CCC-ceEEEEec-ceecceeecccc
Q 015227 89 DQPL-SSN-RYYVIRAK-GKYKGKTCKSSR 115 (411)
Q Consensus 89 ~QPL-SSN-rYYvi~~~-Gkh~G~a~~~sk 115 (411)
++|| -.| +||++-+. |+.-|..-+...
T Consensus 7 G~~l~~~G~~YyI~p~~~g~GGGl~l~~~~ 36 (96)
T 1r8o_A 7 GKPIENDGAEYYILPSVRGKGGGLVLAKSG 36 (96)
T ss_dssp SCCCBSSSSCEEEEESSSSSCCSEEEECCT
T ss_pred CCEeeeCCCcEEEeeCccCCCCeEEEeCCC
Confidence 6899 555 89998763 654556655543
No 7
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=12.61 E-value=1.3e+02 Score=19.98 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.6
Q ss_pred ccccccccccCccc
Q 015227 3 VTRPLSLYRNSPST 16 (411)
Q Consensus 3 vTRpLS~Y~~~Psa 16 (411)
++||||-|-..|+-
T Consensus 2 ~~rPlSpy~~Y~dl 15 (26)
T 3mhp_C 2 TEQPLSPYTAYDDL 15 (26)
T ss_dssp CCCCSSTTTTBTTS
T ss_pred CccccCcccccccc
Confidence 57999999988863
No 8
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=11.31 E-value=71 Score=25.61 Aligned_cols=13 Identities=46% Similarity=0.953 Sum_probs=8.8
Q ss_pred ccccCcccccCCCCCCCCC
Q 015227 9 LYRNSPSTLSAELPPQEGP 27 (411)
Q Consensus 9 ~Y~~~Psals~~~pPPeGP 27 (411)
+|++|| -|+|||.
T Consensus 24 LyQSNP------~P~p~GT 36 (72)
T 3lph_A 24 LYQSNP------PPNPEGT 36 (72)
T ss_dssp HHHTCC------CCCCCSC
T ss_pred HHccCC------CCCCCCc
Confidence 577776 4667774
No 9
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=11.02 E-value=1.1e+02 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=12.6
Q ss_pred CCceEEEEecceecceeec
Q 015227 94 SNRYYVIRAKGKYKGKTCK 112 (411)
Q Consensus 94 SNrYYvi~~~Gkh~G~a~~ 112 (411)
|..||||.. |+..| +..
T Consensus 2 ~~kyYaV~~-G~~~G-Iy~ 18 (53)
T 3bsu_A 2 SHMFYAVRR-GRKTG-VFL 18 (53)
T ss_dssp -CCEEEEEE-SSSCE-EES
T ss_pred CCCEEEEEe-CCCCc-eEC
Confidence 457999985 99999 444
No 10
>1wba_A Winged bean albumin 1; SEED storage protein; 1.80A {Psophocarpus tetragonolobus} SCOP: b.42.4.1
Probab=10.57 E-value=1.5e+02 Score=26.62 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred ecC---CCCCCCC-ceEEEEecceecceeecccc
Q 015227 86 PVL---DQPLSSN-RYYVIRAKGKYKGKTCKSSR 115 (411)
Q Consensus 86 PVl---~QPLSSN-rYYvi~~~Gkh~G~a~~~sk 115 (411)
||| ++||..| .||++- .|..-|..-+..+
T Consensus 4 ~VlD~~G~~l~~g~~YyI~p-~g~gGGl~l~~~~ 36 (175)
T 1wba_A 4 PVYDAEGNKLVNRGKYTIVS-FSDGAGIDVVATG 36 (175)
T ss_dssp BCBCTTSCBCBTTEEEEEEE-TTTCCBEEEECCT
T ss_pred eeEeCCCCCCcCCCcEEEee-cCCCCcEEEeecC
Confidence 455 5899887 888888 7876566555543
Done!