Query 015227
Match_columns 411
No_of_seqs 66 out of 68
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 08:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015227.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015227hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fyhb1 b.1.2.1 (B:12-109) Int 55.4 14 0.00099 26.0 6.1 9 58-66 1-9 (98)
2 d1y6kr1 b.1.2.1 (R:2-100) Inte 31.7 45 0.0033 23.9 5.8 76 57-150 3-81 (99)
3 d1v8ha1 b.1.18.19 (A:2-107) Su 20.7 1.3E+02 0.0093 23.0 6.8 59 48-114 32-90 (106)
4 d1ciya1 b.18.1.3 (A:462-609) d 12.1 81 0.0059 25.3 3.6 23 65-87 123-145 (148)
5 d1dlca1 b.18.1.3 (A:500-644) d 10.8 98 0.0071 24.7 3.7 28 60-87 116-144 (145)
6 d1qhka_ d.100.1.2 (A:) N-termi 10.7 37 0.0027 22.8 0.8 14 95-109 1-14 (47)
7 d2rh2a1 b.34.4.1 (A:21-78) R67 8.7 52 0.0038 23.1 1.0 9 226-235 21-29 (58)
8 d1yvca1 b.40.4.12 (A:1-69) Hyp 8.5 1E+02 0.0076 21.6 2.7 35 52-86 5-44 (69)
9 d2pnxa1 g.50.1.2 (A:195-245) I 8.0 30 0.0022 23.2 -0.6 8 228-235 40-47 (51)
10 d1doka_ d.9.1.1 (A:) Monocyte 7.9 1.3E+02 0.0093 21.2 3.0 37 44-87 11-47 (72)
No 1
>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.43 E-value=14 Score=25.99 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=6.1
Q ss_pred CCCCCcceE
Q 015227 58 LPFPQDKIL 66 (411)
Q Consensus 58 LPFPQN~~L 66 (411)
||=|+|..+
T Consensus 1 vP~P~nv~v 9 (98)
T d1fyhb1 1 VPTPTNVTI 9 (98)
T ss_dssp CCCCEEEEE
T ss_pred CccCCceEE
Confidence 687887544
No 2
>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.73 E-value=45 Score=23.88 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=36.2
Q ss_pred CCCCCCcceEEEEEecCccceeeeeEEEeecCCCCCCCCceEEEEec-ceecce-eecccccccceeeEeecc-ccCCCC
Q 015227 57 RLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAK-GKYKGK-TCKSSRETEVGMCCFSNV-VKDMKP 133 (411)
Q Consensus 57 ~LPFPQN~~LtV~~~~~g~~t~~d~V~FIPVl~QPLSSNrYYvi~~~-Gkh~G~-a~~~skEeD~~tcCf~~~-v~d~kP 133 (411)
.||-|||..|+..... .-+--=|-.+.+-+ =.|+|=.+. |..+-+ ++.|... +.|.|.+ +.+.
T Consensus 3 ~lP~P~nv~~~s~n~~-------~~L~W~pp~~~g~~-~~Y~Ve~~~~~~~~W~~v~~c~~~----t~~~~~~~~~~l-- 68 (99)
T d1y6kr1 3 ELPSPPSVWFEAEFFH-------HILHWTPIPQQSES-TCYEVALLRYGIESWNSISQCSQT----LSYDLTAVTLDL-- 68 (99)
T ss_dssp CCCCCSCEEEEEETTE-------EEEEECCCTTCCTT-CEEEEEEEETTSCCCEEEEEEESS----SEEECGGGGTTG--
T ss_pred cCCCCCcceEEEECCE-------EEEEEcCCCCcCCC-CEEEEEEEECCCcceEEEEeeccc----cccceeeeeeec--
Confidence 6999999777544221 12334455554432 245554433 332222 4445432 3454433 3333
Q ss_pred CCCCccCcceeEEEEEe
Q 015227 134 KPFDFRNIYQQFKIHRY 150 (411)
Q Consensus 134 rp~Dp~diYQQfeI~~~ 150 (411)
++...| +|.|...
T Consensus 69 ---~~~~~Y-~fRVrA~ 81 (99)
T d1y6kr1 69 ---YHSNGY-RARVRAV 81 (99)
T ss_dssp ---GGSSCE-EEEEEEE
T ss_pred ---CCCCEE-EEEEEEE
Confidence 555666 4555533
No 3
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=20.68 E-value=1.3e+02 Score=22.98 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=44.0
Q ss_pred eecccCcccCCCCCCcceEEEEEecCccceeeeeEEEeecCCCCCCCCceEEEEecceecceeeccc
Q 015227 48 GTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPVLDQPLSSNRYYVIRAKGKYKGKTCKSS 114 (411)
Q Consensus 48 Glc~~~~v~~LPFPQN~~LtV~~~~~g~~t~~d~V~FIPVl~QPLSSNrYYvi~~~Gkh~G~a~~~s 114 (411)
|+-+|. .|-+.|.+-+=+|...-+ +.++|=-=++..+|.|-|+...-.|+..|.+...-
T Consensus 32 G~r~d~--~g~~IPa~~I~~v~v~~n------g~~v~~a~~~~svS~NP~~~F~~~~~~~g~l~v~~ 90 (106)
T d1v8ha1 32 GTRRDA--EGKLIPAKYINLVEVYFE------GEKVAEARPGPSTSANPLYAFKFKAEKAGTFTIKL 90 (106)
T ss_dssp SCCBCT--TSCBCCCBCEEEEEEEET------TEEEEEECCCSSCCSSCEEEEEEECCSCEEEEEEE
T ss_pred ccccCC--CCCEecHHheEEEEEEEC------CEEEEEEEcCCcccCCCeEEEEEccCCCceEEEEE
Confidence 566663 256689886655554322 47788888999999999999999999888776554
No 4
>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=12.13 E-value=81 Score=25.26 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.8
Q ss_pred eEEEEEecCccceeeeeEEEeec
Q 015227 65 ILTVVHSNDYQETSVTKVWFLPV 87 (411)
Q Consensus 65 ~LtV~~~~~g~~t~~d~V~FIPV 87 (411)
.|.+...+++...+.|++=||||
T Consensus 123 ~i~~~~~~~~~~v~IDrIEFIPv 145 (148)
T d1ciya1 123 TLSAHVFNSGNEVYIDRIEFVPA 145 (148)
T ss_dssp EEEEESSCTTCCEEEEEEEEEET
T ss_pred EEEEEEcCCCCeEEEEeEEEEcc
Confidence 34444444557889999999998
No 5
>d1dlca1 b.18.1.3 (A:500-644) delta-Endotoxin, C-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=10.83 E-value=98 Score=24.70 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=18.2
Q ss_pred CCCcc-eEEEEEecCccceeeeeEEEeec
Q 015227 60 FPQDK-ILTVVHSNDYQETSVTKVWFLPV 87 (411)
Q Consensus 60 FPQN~-~LtV~~~~~g~~t~~d~V~FIPV 87 (411)
||++- .|.+...+++.+.+.|++=||||
T Consensus 116 ~~~~~~~i~i~~~~~~~~v~IDrIEFIPv 144 (145)
T d1dlca1 116 LSGNNLQIGVTGLSAGDKVYIDKIEFIPV 144 (145)
T ss_dssp CCCSEEEEEEECCCTTCCEEEEEEEEEEE
T ss_pred ecCCcEEEEEEECCCCCcEEEEeEEEEeC
Confidence 45542 23444333457889999999998
No 6
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.71 E-value=37 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.3
Q ss_pred CceEEEEecceecce
Q 015227 95 NRYYVIRAKGKYKGK 109 (411)
Q Consensus 95 NrYYvi~~~Gkh~G~ 109 (411)
+.||||.. |++.|-
T Consensus 1 GkyYaV~~-G~~~GI 14 (47)
T d1qhka_ 1 GNFYAVRK-GRETGI 14 (47)
T ss_dssp CEEEEECS-SSSCEE
T ss_pred CCeEEEEE-CCCCCc
Confidence 56999876 999983
No 7
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=8.71 E-value=52 Score=23.15 Aligned_cols=9 Identities=67% Similarity=1.652 Sum_probs=5.8
Q ss_pred eEeeeeecee
Q 015227 226 SIVGKWYCPF 235 (411)
Q Consensus 226 vvVGkWYcPF 235 (411)
-+|| |||-=
T Consensus 21 ~ivg-wyct~ 29 (58)
T d2rh2a1 21 QIVG-WYCTN 29 (58)
T ss_dssp EEEE-EECCS
T ss_pred eEeE-EEEcc
Confidence 3555 99953
No 8
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=8.49 E-value=1e+02 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=23.1
Q ss_pred cCcccCCCCCCcceEEEEEe---cCc--cceeeeeEEEee
Q 015227 52 LRRVKRLPFPQDKILTVVHS---NDY--QETSVTKVWFLP 86 (411)
Q Consensus 52 ~~~v~~LPFPQN~~LtV~~~---~~g--~~t~~d~V~FIP 86 (411)
..+.+.+|+..|..++|.=. ..| -.-+.+.|+|||
T Consensus 5 k~~~~~~pvk~g~~~~v~I~~l~~~G~Giar~~g~vvfV~ 44 (69)
T d1yvca1 5 KPAMKNVPVEAGKEYEVTIEDMGKGGDGIARIDGFVVFVP 44 (69)
T ss_dssp SSTTSCCSSCTTCEEEEECCEECTTSCEEEEETTEEEEET
T ss_pred cchhccCCCCCCCEEEEEEEECCCCCcEEEEECCEEEEeC
Confidence 46788999999987777432 223 112356888887
No 9
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}
Probab=8.00 E-value=30 Score=23.17 Aligned_cols=8 Identities=63% Similarity=1.788 Sum_probs=6.0
Q ss_pred eeeeecee
Q 015227 228 VGKWYCPF 235 (411)
Q Consensus 228 VGkWYcPF 235 (411)
.|+||||.
T Consensus 40 ~~~w~C~~ 47 (51)
T d2pnxa1 40 RGKWFCPR 47 (51)
T ss_dssp SSCCCCHH
T ss_pred CCcEECcC
Confidence 36899984
No 10
>d1doka_ d.9.1.1 (A:) Monocyte chemoattractant protein-1 (MCP-1, MCAF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.93 E-value=1.3e+02 Score=21.22 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=24.6
Q ss_pred ceeeeecccCcccCCCCCCcceEEEEEecCccceeeeeEEEeec
Q 015227 44 TFCWGTCKLRRVKRLPFPQDKILTVVHSNDYQETSVTKVWFLPV 87 (411)
Q Consensus 44 t~CfGlc~~~~v~~LPFPQN~~LtV~~~~~g~~t~~d~V~FIPV 87 (411)
+||+. ...-+.|.+.+......++ .....+.|+|+-.
T Consensus 11 ~CC~~------~~~~~Ip~~~I~~y~~~t~-~~C~~~aVIf~tk 47 (72)
T d1doka_ 11 TCCYN------FTNRKISVQRLASYRRITS-SKCPKEAVIFKTI 47 (72)
T ss_dssp EECSS------CCCSCCCGGGEEEEEEECC-TTSSSCEEEEEET
T ss_pred ccccc------ccCCcCChhHeEEEEEeCC-CCCCCceEEEEEC
Confidence 78886 3345678888877665433 3455679999765
Done!