Query 015228
Match_columns 411
No_of_seqs 191 out of 663
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 2.1E-13 4.6E-18 97.5 1.4 44 235-296 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.2E-12 2.6E-17 104.2 2.8 56 233-296 18-73 (73)
3 KOG4628 Predicted E3 ubiquitin 99.3 1.6E-12 3.6E-17 130.3 2.7 51 235-302 230-280 (348)
4 PF12861 zf-Apc11: Anaphase-pr 99.1 4.3E-11 9.4E-16 99.6 4.5 64 233-301 20-83 (85)
5 COG5243 HRD1 HRD ubiquitin lig 99.1 5.8E-11 1.3E-15 120.5 3.2 77 211-300 269-345 (491)
6 COG5194 APC11 Component of SCF 99.0 3.6E-10 7.9E-15 93.9 3.5 63 234-301 20-82 (88)
7 PHA02929 N1R/p28-like protein; 98.9 8.2E-10 1.8E-14 106.2 3.2 56 233-301 173-228 (238)
8 cd00162 RING RING-finger (Real 98.9 1.4E-09 3.1E-14 74.1 3.0 45 236-299 1-45 (45)
9 COG5540 RING-finger-containing 98.8 1.8E-09 3.9E-14 107.5 2.3 51 233-300 322-372 (374)
10 KOG1493 Anaphase-promoting com 98.8 2.9E-09 6.3E-14 87.9 1.7 63 233-300 19-81 (84)
11 KOG0802 E3 ubiquitin ligase [P 98.7 5.2E-09 1.1E-13 109.3 2.4 53 232-300 289-341 (543)
12 smart00184 RING Ring finger. E 98.7 1.6E-08 3.4E-13 66.5 3.0 39 237-295 1-39 (39)
13 KOG2930 SCF ubiquitin ligase, 98.6 9.2E-09 2E-13 89.0 1.6 65 232-300 44-108 (114)
14 PF13923 zf-C3HC4_2: Zinc fing 98.6 9.2E-09 2E-13 72.3 1.3 39 237-295 1-39 (39)
15 PLN03208 E3 ubiquitin-protein 98.6 5.5E-08 1.2E-12 91.4 4.6 52 233-301 17-80 (193)
16 PF13920 zf-C3HC4_3: Zinc fing 98.5 4.2E-08 9.1E-13 72.1 1.7 47 234-301 2-49 (50)
17 PF00097 zf-C3HC4: Zinc finger 98.5 5.4E-08 1.2E-12 68.1 1.3 41 237-295 1-41 (41)
18 PF15227 zf-C3HC4_4: zinc fing 98.5 1E-07 2.3E-12 69.1 2.6 42 237-295 1-42 (42)
19 TIGR00599 rad18 DNA repair pro 98.4 2E-07 4.3E-12 95.6 3.9 49 232-301 24-72 (397)
20 PF14634 zf-RING_5: zinc-RING 98.4 3.1E-07 6.7E-12 66.3 3.7 44 236-297 1-44 (44)
21 smart00504 Ubox Modified RING 98.3 3.2E-07 6.9E-12 68.7 2.6 46 235-301 2-47 (63)
22 KOG0320 Predicted E3 ubiquitin 98.3 4.3E-07 9.4E-12 84.9 3.1 51 232-301 129-179 (187)
23 PHA02926 zinc finger-like prot 98.3 7.6E-07 1.7E-11 85.9 4.2 60 232-300 168-230 (242)
24 KOG1734 Predicted RING-contain 98.3 3.4E-07 7.3E-12 90.4 1.7 67 226-301 216-282 (328)
25 KOG0317 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 88.2 3.1 49 231-300 236-284 (293)
26 KOG0827 Predicted E3 ubiquitin 98.2 6.9E-07 1.5E-11 91.6 2.8 53 235-301 5-57 (465)
27 PF13445 zf-RING_UBOX: RING-ty 98.1 1.4E-06 3E-11 64.1 1.4 43 237-293 1-43 (43)
28 smart00744 RINGv The RING-vari 98.0 5.9E-06 1.3E-10 61.9 3.2 44 236-296 1-49 (49)
29 KOG0828 Predicted E3 ubiquitin 97.9 3.6E-06 7.8E-11 88.6 1.8 58 233-300 570-634 (636)
30 KOG0804 Cytoplasmic Zn-finger 97.9 4.9E-06 1.1E-10 86.6 2.4 50 232-300 173-222 (493)
31 KOG2177 Predicted E3 ubiquitin 97.8 1.2E-05 2.5E-10 70.6 2.4 45 232-297 11-55 (386)
32 TIGR00570 cdk7 CDK-activating 97.8 2E-05 4.3E-10 78.9 3.9 56 232-302 1-56 (309)
33 PF04564 U-box: U-box domain; 97.7 1.4E-05 3.1E-10 63.4 2.1 49 233-301 3-51 (73)
34 KOG0823 Predicted E3 ubiquitin 97.7 1.7E-05 3.8E-10 76.5 2.8 53 231-301 44-96 (230)
35 KOG0287 Postreplication repair 97.7 1.3E-05 2.8E-10 81.6 1.9 50 232-302 21-70 (442)
36 PF11793 FANCL_C: FANCL C-term 97.6 4.9E-06 1.1E-10 66.2 -2.3 57 234-301 2-67 (70)
37 COG5574 PEX10 RING-finger-cont 97.6 3.7E-05 8E-10 75.7 2.6 51 230-300 211-262 (271)
38 KOG1941 Acetylcholine receptor 97.5 3.4E-05 7.4E-10 79.7 1.4 53 232-299 363-415 (518)
39 KOG0825 PHD Zn-finger protein 97.5 2.5E-05 5.5E-10 85.8 -0.1 53 232-302 121-173 (1134)
40 COG5219 Uncharacterized conser 97.3 7.7E-05 1.7E-09 83.5 1.7 56 232-299 1467-1522(1525)
41 KOG2164 Predicted E3 ubiquitin 97.3 8.5E-05 1.8E-09 78.4 1.8 51 234-301 186-237 (513)
42 KOG1645 RING-finger-containing 97.3 9E-05 2E-09 76.8 1.9 53 233-299 3-55 (463)
43 PF10367 Vps39_2: Vacuolar sor 97.1 0.00013 2.7E-09 59.3 0.3 34 232-280 76-109 (109)
44 COG5432 RAD18 RING-finger-cont 97.1 0.00024 5.3E-09 71.4 2.3 49 232-301 23-71 (391)
45 KOG0978 E3 ubiquitin ligase in 97.0 0.00026 5.6E-09 77.3 1.1 51 233-303 642-692 (698)
46 KOG0824 Predicted E3 ubiquitin 96.8 0.00082 1.8E-08 67.6 3.4 82 233-334 6-90 (324)
47 KOG0311 Predicted E3 ubiquitin 96.5 0.00055 1.2E-08 70.0 -0.4 51 233-302 42-92 (381)
48 PF11789 zf-Nse: Zinc-finger o 96.5 0.0012 2.7E-08 51.1 1.5 44 233-294 10-53 (57)
49 KOG4265 Predicted E3 ubiquitin 96.5 0.002 4.3E-08 65.8 3.4 49 232-301 288-337 (349)
50 KOG1940 Zn-finger protein [Gen 96.3 0.0023 5E-08 63.5 2.6 48 233-297 157-204 (276)
51 KOG1785 Tyrosine kinase negati 96.0 0.003 6.4E-08 66.0 1.9 51 232-301 367-417 (563)
52 KOG1039 Predicted E3 ubiquitin 96.0 0.004 8.6E-08 63.5 2.4 61 232-302 159-223 (344)
53 KOG2114 Vacuolar assembly/sort 96.0 0.0033 7.1E-08 70.1 1.8 49 229-300 835-883 (933)
54 KOG4159 Predicted E3 ubiquitin 95.8 0.0033 7.1E-08 65.2 1.0 53 232-305 82-134 (398)
55 PF05883 Baculo_RING: Baculovi 95.7 0.0061 1.3E-07 55.1 2.3 36 233-282 25-66 (134)
56 KOG4185 Predicted E3 ubiquitin 95.3 0.011 2.3E-07 57.0 2.6 54 232-299 1-54 (296)
57 KOG1428 Inhibitor of type V ad 95.3 0.011 2.3E-07 69.4 2.9 54 232-300 3484-3544(3738)
58 KOG0827 Predicted E3 ubiquitin 95.3 0.0013 2.7E-08 68.3 -4.2 53 233-302 195-247 (465)
59 KOG3039 Uncharacterized conser 95.2 0.014 2.9E-07 58.1 2.7 53 232-301 219-271 (303)
60 KOG3970 Predicted E3 ubiquitin 95.1 0.016 3.6E-07 57.0 3.1 52 234-300 50-105 (299)
61 KOG4445 Uncharacterized conser 95.0 0.0084 1.8E-07 60.8 0.8 55 232-300 113-186 (368)
62 PF14835 zf-RING_6: zf-RING of 94.9 0.0099 2.1E-07 48.0 0.7 46 234-301 7-52 (65)
63 COG5152 Uncharacterized conser 94.7 0.014 3.1E-07 56.5 1.5 47 234-301 196-242 (259)
64 PF04641 Rtf2: Rtf2 RING-finge 94.7 0.022 4.7E-07 55.1 2.7 70 232-320 111-186 (260)
65 KOG2034 Vacuolar sorting prote 94.7 0.017 3.6E-07 64.9 2.1 37 232-283 815-851 (911)
66 KOG4172 Predicted E3 ubiquitin 94.2 0.016 3.4E-07 46.1 0.5 45 235-301 8-55 (62)
67 PHA02825 LAP/PHD finger-like p 94.1 0.043 9.3E-07 51.1 3.2 52 232-301 6-60 (162)
68 PHA02862 5L protein; Provision 93.9 0.048 1E-06 50.4 3.0 47 234-300 2-53 (156)
69 KOG0297 TNF receptor-associate 93.4 0.047 1E-06 56.1 2.4 49 232-300 19-67 (391)
70 KOG4739 Uncharacterized protei 93.3 0.047 1E-06 53.3 2.0 33 262-300 16-48 (233)
71 PHA03096 p28-like protein; Pro 93.3 0.038 8.3E-07 55.0 1.4 54 235-299 179-233 (284)
72 KOG1813 Predicted E3 ubiquitin 92.5 0.047 1E-06 55.2 0.8 47 234-301 241-287 (313)
73 KOG2660 Locus-specific chromos 92.3 0.044 9.6E-07 55.8 0.4 53 232-304 13-65 (331)
74 PF12906 RINGv: RING-variant d 92.2 0.023 5E-07 42.3 -1.3 42 237-295 1-47 (47)
75 KOG2879 Predicted E3 ubiquitin 92.0 0.091 2E-06 52.8 2.2 51 232-300 237-287 (298)
76 KOG3800 Predicted E3 ubiquitin 91.3 0.17 3.6E-06 51.2 3.1 34 266-302 20-53 (300)
77 COG5222 Uncharacterized conser 90.6 0.17 3.6E-06 51.8 2.4 45 235-298 275-319 (427)
78 COG5236 Uncharacterized conser 90.4 0.19 4.2E-06 52.2 2.7 49 232-301 59-109 (493)
79 PF14570 zf-RING_4: RING/Ubox 90.3 0.24 5.2E-06 37.9 2.5 46 237-300 1-48 (48)
80 KOG1002 Nucleotide excision re 89.5 0.21 4.5E-06 54.4 2.1 53 232-301 534-587 (791)
81 KOG0309 Conserved WD40 repeat- 89.5 0.15 3.3E-06 57.1 1.2 53 232-293 1016-1068(1081)
82 KOG1571 Predicted E3 ubiquitin 88.8 0.15 3.2E-06 52.6 0.5 25 5-29 100-127 (355)
83 KOG3053 Uncharacterized conser 88.8 0.23 4.9E-06 49.8 1.7 59 230-302 16-84 (293)
84 PF14447 Prok-RING_4: Prokaryo 88.1 0.22 4.7E-06 39.3 0.9 34 263-302 19-52 (55)
85 KOG2066 Vacuolar assembly/sort 87.3 0.22 4.8E-06 55.8 0.7 50 233-297 783-832 (846)
86 KOG1952 Transcription factor N 85.4 0.46 9.9E-06 53.8 1.9 56 232-300 189-247 (950)
87 smart00249 PHD PHD zinc finger 84.9 0.58 1.3E-05 32.0 1.6 28 268-295 19-47 (47)
88 PF07800 DUF1644: Protein of u 84.8 0.79 1.7E-05 42.9 2.9 14 289-302 80-93 (162)
89 KOG3268 Predicted E3 ubiquitin 84.4 0.65 1.4E-05 44.7 2.2 37 266-302 187-230 (234)
90 KOG0801 Predicted E3 ubiquitin 84.2 0.29 6.3E-06 46.4 -0.2 29 233-275 176-204 (205)
91 PF08746 zf-RING-like: RING-li 83.7 0.48 1E-05 34.9 0.8 26 268-295 18-43 (43)
92 KOG1829 Uncharacterized conser 83.1 0.56 1.2E-05 51.2 1.4 53 232-300 509-561 (580)
93 KOG1001 Helicase-like transcri 82.9 0.62 1.4E-05 51.5 1.6 48 235-302 455-502 (674)
94 KOG1814 Predicted E3 ubiquitin 82.1 0.92 2E-05 48.0 2.4 55 232-300 182-240 (445)
95 COG5220 TFB3 Cdk activating ki 80.9 0.71 1.5E-05 46.2 1.0 53 232-301 8-65 (314)
96 KOG3161 Predicted E3 ubiquitin 80.5 0.66 1.4E-05 51.5 0.7 87 232-338 9-104 (861)
97 PF13901 DUF4206: Domain of un 79.8 1 2.2E-05 42.4 1.7 49 232-298 150-198 (202)
98 KOG1609 Protein involved in mR 78.5 1.6 3.4E-05 41.7 2.5 54 232-300 76-134 (323)
99 KOG0269 WD40 repeat-containing 77.7 1.1 2.5E-05 50.3 1.5 30 268-301 798-829 (839)
100 PF14446 Prok-RING_1: Prokaryo 77.3 2 4.2E-05 33.9 2.3 35 233-281 4-39 (54)
101 KOG2932 E3 ubiquitin ligase in 76.3 1.3 2.9E-05 45.7 1.4 44 234-299 90-133 (389)
102 KOG4275 Predicted E3 ubiquitin 76.1 0.68 1.5E-05 47.3 -0.7 44 233-301 299-343 (350)
103 COG5183 SSM4 Protein involved 73.4 2.4 5.1E-05 48.5 2.5 52 232-300 10-66 (1175)
104 PF10272 Tmpp129: Putative tra 69.3 5.7 0.00012 41.3 4.0 33 268-300 310-351 (358)
105 KOG1100 Predicted E3 ubiquitin 67.7 1.9 4E-05 41.3 0.2 30 263-300 170-200 (207)
106 KOG2817 Predicted E3 ubiquitin 66.4 3.9 8.5E-05 43.0 2.3 54 232-300 332-385 (394)
107 KOG3113 Uncharacterized conser 64.4 4.3 9.3E-05 40.9 2.0 53 232-303 109-161 (293)
108 KOG0298 DEAD box-containing he 64.2 3 6.5E-05 49.4 1.0 48 233-300 1152-1199(1394)
109 KOG4692 Predicted E3 ubiquitin 63.7 4.2 9.1E-05 42.9 1.8 47 232-300 420-467 (489)
110 KOG0782 Predicted diacylglycer 62.3 6.4 0.00014 43.9 3.0 95 122-218 65-175 (1004)
111 PF00628 PHD: PHD-finger; Int 62.3 0.75 1.6E-05 33.4 -2.8 30 268-297 19-50 (51)
112 PF04710 Pellino: Pellino; In 57.0 3.5 7.7E-05 43.5 0.0 62 233-300 276-339 (416)
113 COG5175 MOT2 Transcriptional r 54.7 9 0.0002 40.3 2.4 52 233-300 13-64 (480)
114 KOG3899 Uncharacterized conser 53.6 8.1 0.00017 39.9 1.9 33 268-300 324-365 (381)
115 KOG4367 Predicted Zn-finger pr 50.6 11 0.00023 40.9 2.3 35 233-284 3-37 (699)
116 PF02891 zf-MIZ: MIZ/SP-RING z 49.0 9.9 0.00021 28.7 1.3 33 263-298 15-50 (50)
117 KOG0825 PHD Zn-finger protein 47.2 13 0.00028 42.8 2.3 56 232-300 94-154 (1134)
118 KOG3002 Zn finger protein [Gen 45.2 15 0.00033 37.2 2.3 44 232-300 46-91 (299)
119 KOG1812 Predicted E3 ubiquitin 45.0 11 0.00023 39.2 1.3 56 232-300 144-203 (384)
120 KOG3842 Adaptor protein Pellin 44.0 16 0.00035 38.1 2.4 59 233-299 289-351 (429)
121 PF14569 zf-UDP: Zinc-binding 43.5 24 0.00051 30.0 2.8 57 232-301 7-63 (80)
122 PF04710 Pellino: Pellino; In 43.4 7.8 0.00017 41.1 0.0 39 263-301 359-402 (416)
123 KOG0826 Predicted E3 ubiquitin 42.8 14 0.0003 38.5 1.6 49 232-300 298-346 (357)
124 PF05290 Baculo_IE-1: Baculovi 42.2 24 0.00051 32.7 2.8 54 233-301 79-133 (140)
125 cd00350 rubredoxin_like Rubred 42.2 7.9 0.00017 26.8 -0.1 11 290-300 18-28 (33)
126 KOG2068 MOT2 transcription fac 41.9 20 0.00043 37.2 2.6 50 235-301 250-299 (327)
127 cd04718 BAH_plant_2 BAH, or Br 41.2 12 0.00025 34.8 0.7 30 273-302 2-31 (148)
128 PLN02915 cellulose synthase A 38.6 30 0.00065 40.7 3.6 56 232-300 13-68 (1044)
129 PF05605 zf-Di19: Drought indu 37.7 27 0.00059 26.2 2.1 12 234-245 2-13 (54)
130 KOG0802 E3 ubiquitin ligase [P 37.2 16 0.00035 39.2 1.2 45 232-301 477-521 (543)
131 KOG4185 Predicted E3 ubiquitin 37.0 7.1 0.00015 37.9 -1.4 53 233-299 206-266 (296)
132 KOG3842 Adaptor protein Pellin 35.9 31 0.00066 36.2 2.8 38 264-301 373-415 (429)
133 COG5109 Uncharacterized conser 35.2 22 0.00049 37.1 1.8 52 232-298 334-385 (396)
134 PLN02189 cellulose synthase 34.7 29 0.00062 40.9 2.7 56 232-300 32-87 (1040)
135 KOG4362 Transcriptional regula 34.2 16 0.00035 41.0 0.6 50 233-300 20-69 (684)
136 KOG3005 GIY-YIG type nuclease 31.7 42 0.00091 34.1 3.0 56 235-300 183-243 (276)
137 PLN02436 cellulose synthase A 30.7 40 0.00087 39.9 3.0 57 231-300 33-89 (1094)
138 PF03854 zf-P11: P-11 zinc fin 30.6 18 0.00039 28.3 0.2 31 266-300 15-46 (50)
139 PLN02638 cellulose synthase A 30.3 49 0.0011 39.2 3.6 56 232-300 15-70 (1079)
140 PRK11827 hypothetical protein; 30.0 17 0.00038 29.0 0.0 32 290-321 9-47 (60)
141 PF04423 Rad50_zn_hook: Rad50 29.8 11 0.00024 28.3 -1.1 34 277-311 8-41 (54)
142 KOG4718 Non-SMC (structural ma 29.7 27 0.00059 34.6 1.3 50 232-301 179-228 (235)
143 KOG4577 Transcription factor L 28.4 12 0.00025 38.7 -1.5 13 268-280 111-123 (383)
144 KOG1701 Focal adhesion adaptor 27.1 10 0.00022 40.6 -2.2 41 235-304 335-375 (468)
145 PF06676 DUF1178: Protein of u 27.1 21 0.00045 33.1 -0.0 39 268-311 9-54 (148)
146 KOG2979 Protein involved in DN 25.5 36 0.00077 34.4 1.3 48 241-295 172-219 (262)
147 PLN02400 cellulose synthase 23.9 62 0.0013 38.4 2.9 57 231-300 33-89 (1085)
148 PLN02195 cellulose synthase A 23.6 59 0.0013 38.2 2.7 55 233-300 5-59 (977)
149 KOG1815 Predicted E3 ubiquitin 23.4 48 0.001 34.8 1.8 54 232-301 68-127 (444)
150 PF14169 YdjO: Cold-inducible 20.5 49 0.0011 26.6 0.9 13 289-301 39-51 (59)
151 KOG2231 Predicted E3 ubiquitin 20.0 62 0.0014 36.5 1.9 50 236-302 2-54 (669)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.35 E-value=2.1e-13 Score=97.55 Aligned_cols=44 Identities=34% Similarity=0.749 Sum_probs=36.4
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 296 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR 296 (411)
..|+||++.|. +...+.+|+|||+||.+||.+|+.+. .+||+||
T Consensus 1 d~C~IC~~~~~--------------~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFE--------------DGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHH--------------TTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhc--------------CCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 36999999998 23456789999999999999999875 4999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.29 E-value=1.2e-12 Score=104.17 Aligned_cols=56 Identities=25% Similarity=0.558 Sum_probs=40.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 296 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR 296 (411)
....|+||++.|...++..... ++.-.+.+++|||+||.+||.+||...+ +||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~----~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAP----QDECPIVWGPCGHIFHFHCISQWLKQNN----TCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHC----TTTS-EEEETTSEEEEHHHHHHHHTTSS----B-TTSS
T ss_pred cCCcccccChhhhChhhhhcCC----ccccceEecccCCCEEHHHHHHHHhcCC----cCCCCC
Confidence 3456999999997655544331 1223456779999999999999997764 999997
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.6e-12 Score=130.28 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=44.7
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
..|+||+|+|. +.+.+++|||.|.||..||+.||.+.. ..||+||..+...
T Consensus 230 ~~CaIClEdY~--------------~GdklRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYE--------------KGDKLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccc--------------cCCeeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCCC
Confidence 48999999999 567899999999999999999998764 4799999988643
No 4
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.13 E-value=4.3e-11 Score=99.55 Aligned_cols=64 Identities=25% Similarity=0.510 Sum_probs=51.1
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.++.|+||...|+..+| ...++..+.+.+ ...|+|.||.+||.+||.... ....||+||..+.-
T Consensus 20 ~dd~CgICr~~fdg~Cp---~Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCP---DCKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCC---CccCCCCCCcee-eccCccHHHHHHHHHHHcccc-CCCCCCCcCCeeee
Confidence 47889999999997776 456666665554 678999999999999998753 23699999998763
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.8e-11 Score=120.49 Aligned_cols=77 Identities=22% Similarity=0.417 Sum_probs=53.5
Q ss_pred hhhcccCCCCCcccccCCCCCCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCC
Q 015228 211 VDFADVSEPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDP 290 (411)
Q Consensus 211 ~dl~di~E~~~~es~~~~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dp 290 (411)
.|+-+..+....|.++ .++..|.||.+++-.. .+..+..+-....+.|||||+||.+||..|+++++
T Consensus 269 kdl~~~~~t~t~eql~-----n~D~~C~ICmde~~h~----~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ---- 335 (491)
T COG5243 269 KDLNAMYPTATEEQLT-----NSDRTCTICMDEMFHP----DHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ---- 335 (491)
T ss_pred hHHHhhcchhhhhhhc-----CCCCeEEEecccccCC----CCccCcccccCCcccccccceeeHHHHHHHHHhcc----
Confidence 3555555555555543 5788999999995421 11222222233557899999999999999999886
Q ss_pred CCcccccCcc
Q 015228 291 SCPICLRLQE 300 (411)
Q Consensus 291 tCPLCR~~~~ 300 (411)
+|||||.++.
T Consensus 336 TCPICr~p~i 345 (491)
T COG5243 336 TCPICRRPVI 345 (491)
T ss_pred CCCcccCccc
Confidence 9999999953
No 6
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.97 E-value=3.6e-10 Score=93.85 Aligned_cols=63 Identities=17% Similarity=0.319 Sum_probs=53.6
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+.|+||...+...+|++.....++++. ++....|.|+||.+||.+||..+. .||+|++.+.-
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC-~v~wG~CnHaFH~HCI~rWL~Tk~----~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDEC-PVVWGVCNHAFHDHCIYRWLDTKG----VCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcc-eEEEEecchHHHHHHHHHHHhhCC----CCCCCCceeEE
Confidence 4789999999999999998776554444 566889999999999999998864 89999999864
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.89 E-value=8.2e-10 Score=106.15 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=40.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+..|+||++.+.+... .......+++|||+||.+||.+|+... .+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~---------~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEI---------KNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCcc---------ccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCEeeE
Confidence 56789999998762110 001112334799999999999999764 599999998763
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=1.4e-09 Score=74.09 Aligned_cols=45 Identities=27% Similarity=0.675 Sum_probs=35.6
Q ss_pred cccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 236 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 236 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
.|+||++.+. ..+.+++|||.||.+||+.|+.... ..||+|+..+
T Consensus 1 ~C~iC~~~~~----------------~~~~~~~C~H~~c~~C~~~~~~~~~---~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR----------------EPVVLLPCGHVFCRSCIDKWLKSGK---NTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh----------------CceEecCCCChhcHHHHHHHHHhCc---CCCCCCCCcC
Confidence 4999998874 1344567999999999999998633 5799999753
No 9
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.8e-09 Score=107.51 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=42.4
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+..|+||++.|. ..+.+.+|||.|+||..||++|+..-. ..||+||.++.
T Consensus 322 ~GveCaICms~fi--------------K~d~~~vlPC~H~FH~~Cv~kW~~~y~---~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFI--------------KNDRLRVLPCDHRFHVGCVDKWLLGYS---NKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhc--------------ccceEEEeccCceechhHHHHHHhhhc---ccCCccCCCCC
Confidence 4578999999997 345688999999999999999997322 47999998764
No 10
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.9e-09 Score=87.93 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=51.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
..++|+||..+|...+| ...++.+|.|.| ..-|.|.||++||.+|+..... ...||+||..+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp---~Ck~PgDdCPLv-~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCP---DCKLPGDDCPLV-WGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCC---CCcCCCCCCccH-HHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 34589999999997776 567888888764 4589999999999999987543 378999999875
No 11
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.2e-09 Score=109.33 Aligned_cols=53 Identities=28% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|.||.+.+.. .+...+..|+|||+||..||.+|++..+ +||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~------------~~~~~~~rL~C~Hifh~~CL~~W~er~q----tCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHS------------GHNITPKRLPCGHIFHDSCLRSWFERQQ----TCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhcc------------ccccccceeecccchHHHHHHHHHHHhC----cCCcchhhhh
Confidence 347889999999981 1223467899999999999999999865 9999999553
No 12
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.67 E-value=1.6e-08 Score=66.55 Aligned_cols=39 Identities=33% Similarity=0.763 Sum_probs=31.0
Q ss_pred ccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
|+||++... ...+++|||+||.+||+.|+...+ ..||+|
T Consensus 1 C~iC~~~~~-----------------~~~~~~C~H~~c~~C~~~~~~~~~---~~CP~C 39 (39)
T smart00184 1 CPICLEELK-----------------DPVVLPCGHTFCRSCIRKWLKSGN---NTCPIC 39 (39)
T ss_pred CCcCccCCC-----------------CcEEecCCChHHHHHHHHHHHhCc---CCCCCC
Confidence 788977633 355789999999999999998332 579998
No 13
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.2e-09 Score=89.04 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=52.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+..++|+||...+-..+.++....-...+.-.|+...|.|.||.+||.+||..++ .||||.+++.
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~----vCPLdn~eW~ 108 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRN----VCPLDNKEWV 108 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcC----cCCCcCccee
Confidence 4567899999999877877766543333444688889999999999999998876 8999999886
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.64 E-value=9.2e-09 Score=72.32 Aligned_cols=39 Identities=44% Similarity=0.954 Sum_probs=31.6
Q ss_pred ccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
|+||++.+. + .+.+++|||+|+.+||++|+.++ ..||+|
T Consensus 1 C~iC~~~~~--------------~--~~~~~~CGH~fC~~C~~~~~~~~----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--------------D--PVVVTPCGHSFCKECIEKYLEKN----PKCPVC 39 (39)
T ss_dssp ETTTTSB-S--------------S--EEEECTTSEEEEHHHHHHHHHCT----SB-TTT
T ss_pred CCCCCCccc--------------C--cCEECCCCCchhHHHHHHHHHCc----CCCcCC
Confidence 899999887 2 34578999999999999999884 589998
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.56 E-value=5.5e-08 Score=91.41 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=40.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC------------CCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT------------QKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~------------~~~dptCPLCR~~~~ 300 (411)
....|+||++.+. + ..+++|||+|+..||.+|+... .+..+.||+|+..+.
T Consensus 17 ~~~~CpICld~~~--------------d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVR--------------D---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCC--------------C---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 5678999999876 2 2357899999999999998521 122468999999996
Q ss_pred c
Q 015228 301 E 301 (411)
Q Consensus 301 ~ 301 (411)
.
T Consensus 80 ~ 80 (193)
T PLN03208 80 E 80 (193)
T ss_pred h
Confidence 3
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.50 E-value=4.2e-08 Score=72.08 Aligned_cols=47 Identities=32% Similarity=0.648 Sum_probs=37.2
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
...|.||++... .+..+||||. |...|+++|+... ..||+||+.+..
T Consensus 2 ~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-----------------DVVLLPCGHLCFCEECAERLLKRK----KKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-----------------SEEEETTCEEEEEHHHHHHHHHTT----SBBTTTTBB-SE
T ss_pred cCCCccCCccCC-----------------ceEEeCCCChHHHHHHhHHhcccC----CCCCcCChhhcC
Confidence 457999998755 2568899999 9999999999854 589999998753
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.46 E-value=5.4e-08 Score=68.14 Aligned_cols=41 Identities=29% Similarity=0.758 Sum_probs=33.0
Q ss_pred ccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
|+||++.+.+ .+.+++|||.|+.+||.+|+.... ...||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~C~H~fC~~C~~~~~~~~~--~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----------------PVILLPCGHSFCRDCLRKWLENSG--SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----------------EEEETTTSEEEEHHHHHHHHHHTS--SSBTTTT
T ss_pred CCcCCccccC----------------CCEEecCCCcchHHHHHHHHHhcC--CccCCcC
Confidence 8999998871 235789999999999999998421 3689998
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.45 E-value=1e-07 Score=69.05 Aligned_cols=42 Identities=33% Similarity=0.680 Sum_probs=30.9
Q ss_pred ccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
|+||++.|+ ....|+|||+|-..||++|..+.......||+|
T Consensus 1 CpiC~~~~~-----------------~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-----------------DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-----------------SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-----------------CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999998 123689999999999999998765444689998
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=2e-07 Score=95.56 Aligned_cols=49 Identities=31% Similarity=0.920 Sum_probs=40.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+||++.|. .++ +++|||.|+..||..|+... ..||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~---------------~Pv--itpCgH~FCs~CI~~~l~~~----~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD---------------VPV--LTSCSHTFCSLCIRRCLSNQ----PKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh---------------Ccc--CCCCCCchhHHHHHHHHhCC----CCCCCCCCcccc
Confidence 46678999999987 123 57999999999999999764 479999999864
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.39 E-value=3.1e-07 Score=66.35 Aligned_cols=44 Identities=32% Similarity=0.749 Sum_probs=35.0
Q ss_pred cccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015228 236 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 236 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
.|.||.+.|. +.....+++|||+|...||+++... ...||+|++
T Consensus 1 ~C~~C~~~~~--------------~~~~~~l~~CgH~~C~~C~~~~~~~----~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS--------------EERRPRLTSCGHIFCEKCLKKLKGK----SVKCPICRK 44 (44)
T ss_pred CCcCcCcccc--------------CCCCeEEcccCCHHHHHHHHhhcCC----CCCCcCCCC
Confidence 4899999984 2234668899999999999999922 258999985
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.32 E-value=3.2e-07 Score=68.72 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=38.2
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..|+||++.+. + + .+++|||+|..+||++|+.+. .+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~--------------~-P--v~~~~G~v~~~~~i~~~~~~~----~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMK--------------D-P--VILPSGQTYERRAIEKWLLSH----GTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCC--------------C-C--EECCCCCEEeHHHHHHHHHHC----CCCCCCcCCCCh
Confidence 57999999987 2 3 256999999999999999763 589999988853
No 22
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.3e-07 Score=84.90 Aligned_cols=51 Identities=29% Similarity=0.745 Sum_probs=41.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+||++.+.++.|. ...|||+|..+||+.-+.+.. .||+|++.+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~v---------------sTkCGHvFC~~Cik~alk~~~----~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV---------------STKCGHVFCSQCIKDALKNTN----KCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhcccc---------------ccccchhHHHHHHHHHHHhCC----CCCCcccccch
Confidence 4558899999999965431 248999999999999998875 89999987654
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.26 E-value=7.6e-07 Score=85.88 Aligned_cols=60 Identities=27% Similarity=0.604 Sum_probs=41.7
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccCCC--CCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~--~~dptCPLCR~~~~ 300 (411)
..+..|+||++...++... .+ -.-++| +|+|+|+..||.+|....+ ....+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~--------~e-RrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLE--------ND-RYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCcccccccccc--------cc-ccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4678999999987633110 01 123355 7999999999999997532 11246999999876
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.4e-07 Score=90.44 Aligned_cols=67 Identities=24% Similarity=0.443 Sum_probs=47.5
Q ss_pred cCCCCCCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 226 GQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 226 ~~~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
|.|....++..|+||.+.+.... . ..+-.+..-.|.|+|+||+.||.-|---+++ ++||-|+..++-
T Consensus 216 glPtkhl~d~vCaVCg~~~~~s~--~-----eegvienty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKekVdl 282 (328)
T KOG1734|consen 216 GLPTKHLSDSVCAVCGQQIDVSV--D-----EEGVIENTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKEKVDL 282 (328)
T ss_pred CCCCCCCCcchhHhhcchheeec--c-----hhhhhhhheeeecccchHHHhhhhheeecCC--CCCchHHHHhhH
Confidence 34555578889999998876110 0 0111124667899999999999999765543 699999998874
No 25
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.4e-07 Score=88.16 Aligned_cols=49 Identities=29% Similarity=0.635 Sum_probs=39.8
Q ss_pred CCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 231 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 231 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+.....|.||++.-. + ....||||+|...||..|+.++. .||+||....
T Consensus 236 ~~a~~kC~LCLe~~~--------------~---pSaTpCGHiFCWsCI~~w~~ek~----eCPlCR~~~~ 284 (293)
T KOG0317|consen 236 PEATRKCSLCLENRS--------------N---PSATPCGHIFCWSCILEWCSEKA----ECPLCREKFQ 284 (293)
T ss_pred CCCCCceEEEecCCC--------------C---CCcCcCcchHHHHHHHHHHcccc----CCCcccccCC
Confidence 356689999998854 1 22559999999999999998874 7999998765
No 26
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.9e-07 Score=91.62 Aligned_cols=53 Identities=28% Similarity=0.568 Sum_probs=38.0
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..|.|| .++. ..+.++..+-.|||+||..||.+||..... +.+||+|+-.+.+
T Consensus 5 A~C~Ic-~d~~------------p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHIC-IDGR------------PNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQIKLQE 57 (465)
T ss_pred ceeeEe-ccCC------------ccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceeecccc
Confidence 569999 5554 123444555579999999999999976532 2479999955554
No 27
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.07 E-value=1.4e-06 Score=64.14 Aligned_cols=43 Identities=33% Similarity=0.783 Sum_probs=23.1
Q ss_pred ccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 293 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCP 293 (411)
|+||.+ |.. +.....+|+|||+|-.+||++++.+.......||
T Consensus 1 CpIc~e-~~~-------------~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FST-------------EENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----T-------------TSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccC-------------CCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 761 2223457999999999999999986533346787
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.97 E-value=5.9e-06 Score=61.92 Aligned_cols=44 Identities=30% Similarity=0.597 Sum_probs=32.6
Q ss_pred cccccccchhccCCCccccccccCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccc
Q 015228 236 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICL 296 (411)
Q Consensus 236 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR 296 (411)
.|-||++..+ + ...-++||. |.+|..||++|+.+.. ..+||+|.
T Consensus 1 ~CrIC~~~~~--------------~-~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD--------------E-GDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCC--------------C-CCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 4899987222 1 233477985 9999999999998764 25899995
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.6e-06 Score=88.56 Aligned_cols=58 Identities=29% Similarity=0.508 Sum_probs=39.5
Q ss_pred CCccccccccchhccCCCccccccccCCCCC-------ceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPV-------VGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~v-------VaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+...|+||+.++.-+.- ...++.. -.+-||.|+||..||++|....+ ..||+||..+.
T Consensus 570 ~t~dC~ICMt~I~l~~~-------~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk---l~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRST-------GSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK---LICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeec-------cCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc---ccCCccCCCCC
Confidence 45689999988762210 0111111 12449999999999999998543 57999998764
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.91 E-value=4.9e-06 Score=86.59 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=39.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+..+|+||++-+.+ +..-+....|.|.||..||.+|.. .+||+||....
T Consensus 173 tELPTCpVCLERMD~-------------s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDS-------------STTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCc-------------cccceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 577899999999872 223344557999999999999985 48999997665
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=1.2e-05 Score=70.59 Aligned_cols=45 Identities=29% Similarity=0.809 Sum_probs=38.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
.+...|.||++.|. + + .+|+|||.|-..||..++. . ...||.|+.
T Consensus 11 ~~~~~C~iC~~~~~--------------~-p--~~l~C~H~~c~~C~~~~~~-~---~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR--------------E-P--VLLPCGHNFCRACLTRSWE-G---PLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh--------------c-C--ccccccchHhHHHHHHhcC-C---CcCCcccCC
Confidence 46788999999998 2 2 5889999999999999997 2 268999994
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.76 E-value=2e-05 Score=78.93 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=39.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
|++..|+||+....- +.++. .-+.+|||.|...||+..+.... ..||.|+..+...
T Consensus 1 md~~~CP~Ck~~~y~-----------np~~k-l~i~~CGH~~C~sCv~~l~~~~~---~~CP~C~~~lrk~ 56 (309)
T TIGR00570 1 MDDQGCPRCKTTKYR-----------NPSLK-LMVNVCGHTLCESCVDLLFVRGS---GSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCCcCCCCCcc-----------Ccccc-cccCCCCCcccHHHHHHHhcCCC---CCCCCCCCccchh
Confidence 567889999875320 01221 11228999999999999876553 5899999988643
No 33
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.75 E-value=1.4e-05 Score=63.35 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=36.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||.+.+. | ..+++|||+|-..||++|+.+.. .+||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~--------------d---PVi~~~G~tyer~~I~~~l~~~~---~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMR--------------D---PVILPSGHTYERSAIERWLEQNG---GTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-S--------------S---EEEETTSEEEEHHHHHHHHCTTS---SB-TTT-SB-SG
T ss_pred cccCCcCcCcHhh--------------C---ceeCCcCCEEcHHHHHHHHHcCC---CCCCCCCCcCCc
Confidence 4678999999987 1 22679999999999999998833 699999888764
No 34
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.7e-05 Score=76.51 Aligned_cols=53 Identities=28% Similarity=0.582 Sum_probs=41.3
Q ss_pred CCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 231 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 231 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...+.|-||++.-+ .++ |-.|||.|..-||-|||.... ....||+|+..+..
T Consensus 44 ~~~~FdCNICLd~ak---------------dPV--vTlCGHLFCWpClyqWl~~~~-~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---------------DPV--VTLCGHLFCWPCLYQWLQTRP-NSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccC---------------CCE--EeecccceehHHHHHHHhhcC-CCeeCCcccccccc
Confidence 457889999998754 123 458999999999999997643 23579999999974
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.72 E-value=1.3e-05 Score=81.59 Aligned_cols=50 Identities=26% Similarity=0.758 Sum_probs=41.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
.+...|.||.+.|. +..+.||+|.|..-||...|... |.||+|+..+.+.
T Consensus 21 D~lLRC~IC~eyf~-----------------ip~itpCsHtfCSlCIR~~L~~~----p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFN-----------------IPMITPCSHTFCSLCIRKFLSYK----PQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhc-----------------CceeccccchHHHHHHHHHhccC----CCCCceecccchh
Confidence 35678999999997 23355899999999999999765 7999999999764
No 36
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.62 E-value=4.9e-06 Score=66.21 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=24.8
Q ss_pred CccccccccchhccCCCccccccccCCCCCcee--ecCCCHhhHHHHHhhccCCCC----CC---CCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGV--LSCRHVFHAECLEQTTPKTQK----SD---PSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaV--LPCGHVFHaeCLeqWL~k~~~----~d---ptCPLCR~~~~~ 301 (411)
...|+||...+.+ .+..+.+.= -.|+++||..||-+||..... -. .+||.|+..+..
T Consensus 2 ~~~C~IC~~~~~~-----------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLD-----------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-T-----------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecC-----------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4579999877541 011222111 269999999999999964211 11 369999998763
No 37
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.7e-05 Score=75.68 Aligned_cols=51 Identities=31% Similarity=0.562 Sum_probs=40.3
Q ss_pred CCCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHh-hccCCCCCCCCCcccccCcc
Q 015228 230 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 230 s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeq-WL~k~~~~dptCPLCR~~~~ 300 (411)
.|..+..|.||++.-. +..-++|||+|...||-. |+.++- .-||+||.-..
T Consensus 211 ip~~d~kC~lC~e~~~-----------------~ps~t~CgHlFC~~Cl~~~~t~~k~---~~CplCRak~~ 262 (271)
T COG5574 211 IPLADYKCFLCLEEPE-----------------VPSCTPCGHLFCLSCLLISWTKKKY---EFCPLCRAKVY 262 (271)
T ss_pred ccccccceeeeecccC-----------------CcccccccchhhHHHHHHHHHhhcc---ccCchhhhhcc
Confidence 3466889999998855 233569999999999999 987763 34999998765
No 38
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.51 E-value=3.4e-05 Score=79.74 Aligned_cols=53 Identities=30% Similarity=0.753 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
..+..|+.|.+.+-.+ .+..-.|||.|+||+.|+.+.|.++. +.+||.||+..
T Consensus 363 e~~L~Cg~CGe~~Glk-------------~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLK-------------NERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCC-------------cccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHHH
Confidence 3567899999988732 12355789999999999999996653 46999999443
No 39
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.47 E-value=2.5e-05 Score=85.81 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=43.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
-....|++|+.-+. |.-+....+|+|+||++||+.|..-.+ +||+|+..+.+.
T Consensus 121 ~~~~~CP~Ci~s~~--------------DqL~~~~k~c~H~FC~~Ci~sWsR~aq----TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCN--------------DQLEESEKHTAHYFCEECVGSWSRCAQ----TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhhHHHHHHH--------------HHhhccccccccccHHHHhhhhhhhcc----cCchhhhhhhee
Confidence 35667999998877 333455669999999999999987765 999999999754
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.34 E-value=7.7e-05 Score=83.48 Aligned_cols=56 Identities=25% Similarity=0.605 Sum_probs=39.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
.....|+||..-|..- .+ ..|.-+-..|.|-||..||-+|+.... ..+||+||..+
T Consensus 1467 sG~eECaICYsvL~~v-----dr-----~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMV-----DR-----SLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHH-----hc-----cCCccccchhhhhhhHHHHHHHHHhcC--CCCCCcccccc
Confidence 3667899998887610 01 112222336999999999999998764 36999999765
No 41
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=8.5e-05 Score=78.43 Aligned_cols=51 Identities=29% Similarity=0.496 Sum_probs=38.4
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~dptCPLCR~~~~~ 301 (411)
...|+||++.-. +.....|||+|.-.||-+.+... .+.-..||||+..+.-
T Consensus 186 ~~~CPICL~~~~-----------------~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS-----------------VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC-----------------cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 788999998744 22233599999999999888765 2223579999998864
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=9e-05 Score=76.79 Aligned_cols=53 Identities=25% Similarity=0.543 Sum_probs=41.3
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
...+|+||++.++- . ....+..|.|||.|-.+||++||-+ +....||+|....
T Consensus 3 ~g~tcpiclds~~~-----------~-g~hr~vsl~cghlFgs~cie~wl~k--~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTT-----------A-GNHRIVSLQCGHLFGSQCIEKWLGK--KTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeee-----------c-CceEEeeecccccccHHHHHHHHhh--hhhhhCcccCChh
Confidence 56789999999871 1 2345667899999999999999953 3346899998765
No 43
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.12 E-value=0.00013 Score=59.30 Aligned_cols=34 Identities=32% Similarity=0.823 Sum_probs=28.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHh
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ 280 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeq 280 (411)
.+...|+||.+.|. . .+..+.||||+||..|+++
T Consensus 76 ~~~~~C~vC~k~l~--------------~-~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLG--------------N-SVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCC--------------C-ceEEEeCCCeEEecccccC
Confidence 35677999999987 2 4678999999999999863
No 44
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.11 E-value=0.00024 Score=71.45 Aligned_cols=49 Identities=24% Similarity=0.657 Sum_probs=39.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|-||.+.|. +....+|||.|..-||...|... +-||+||.+..+
T Consensus 23 Ds~lrC~IC~~~i~-----------------ip~~TtCgHtFCslCIR~hL~~q----p~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRIS-----------------IPCETTCGHTFCSLCIRRHLGTQ----PFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheee-----------------cceecccccchhHHHHHHHhcCC----CCCccccccHHh
Confidence 35578999999887 12245899999999999999765 699999998854
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00026 Score=77.33 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=41.3
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCC
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 303 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~ 303 (411)
....|++|..-.. | +.+..|||+|..+|++.-+..++ ..||.|...++.++
T Consensus 642 ~~LkCs~Cn~R~K--------------d---~vI~kC~H~FC~~Cvq~r~etRq---RKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK--------------D---AVITKCGHVFCEECVQTRYETRQ---RKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchh--------------h---HHHHhcchHHHHHHHHHHHHHhc---CCCCCCCCCCCccc
Confidence 4578999985544 2 33568999999999999998876 58999999999754
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00082 Score=67.60 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=57.1
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCCCcchh-hh
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQQVF-SR 311 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~~qp~~-~~ 311 (411)
....|+||+..-. .+ ..|+|+|.|.-.||+--..... .+|++||.++.+....||++ .+
T Consensus 6 ~~~eC~IC~nt~n---------------~P--v~l~C~HkFCyiCiKGsy~ndk---~~CavCR~pids~i~~~psl~~~ 65 (324)
T KOG0824|consen 6 KKKECLICYNTGN---------------CP--VNLYCFHKFCYICIKGSYKNDK---KTCAVCRFPIDSTIDFEPSLKYR 65 (324)
T ss_pred cCCcceeeeccCC---------------cC--ccccccchhhhhhhcchhhcCC---CCCceecCCCCcchhcchhhhhh
Confidence 4567999987643 22 3789999999999998776554 47999999999887766654 56
Q ss_pred hcccCCccccccC--CCCCCCCCCC
Q 015228 312 LKNSFPRLRQSCD--NGQSRPWGCP 334 (411)
Q Consensus 312 lr~~~p~l~~~~~--~G~sr~wg~a 334 (411)
|+-..|.....+. .+.-..|++.
T Consensus 66 LK~n~p~~~~~t~~~~~rag~n~nq 90 (324)
T KOG0824|consen 66 LKPNTPEVKRITRSQAKRAGVNGNQ 90 (324)
T ss_pred hcCCCCCCCcccccHHhhhhhhccC
Confidence 6666665554443 3333335544
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.00055 Score=70.00 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=41.5
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
....|.||+..|.. ...+.-|+|-|..+||..-+...+ ..||.||+.++.+
T Consensus 42 ~~v~c~icl~llk~----------------tmttkeClhrfc~~ci~~a~r~gn---~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK----------------TMTTKECLHRFCFDCIWKALRSGN---NECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh----------------hcccHHHHHHHHHHHHHHHHHhcC---CCCchHHhhcccc
Confidence 45679999999981 223447999999999999998775 6999999999755
No 48
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.51 E-value=0.0012 Score=51.12 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=28.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI 294 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPL 294 (411)
....|+|.++.|. +.|....|||+|=.+.|.++|.+. ....||+
T Consensus 10 ~~~~CPiT~~~~~----------------~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE----------------DPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S----------------SEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred eccCCCCcCChhh----------------CCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 4568999999987 245566999999999999999432 2368998
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.002 Score=65.79 Aligned_cols=49 Identities=31% Similarity=0.581 Sum_probs=38.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|.||+.+-. .+.+|||.|. ....|.+.---.. ..|||||..+.+
T Consensus 288 ~~gkeCVIClse~r-----------------dt~vLPCRHLCLCs~Ca~~Lr~q~----n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESR-----------------DTVVLPCRHLCLCSGCAKSLRYQT----NNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCc-----------------ceEEecchhhehhHhHHHHHHHhh----cCCCccccchHh
Confidence 34678999998765 3569999998 7889988764222 369999999986
No 50
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.32 E-value=0.0023 Score=63.52 Aligned_cols=48 Identities=33% Similarity=0.863 Sum_probs=39.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
....|+||.+.+.. ..+.+.+|+|||..|..|+++...+. .+||+|.+
T Consensus 157 ~~~ncPic~e~l~~-------------s~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFL-------------SFEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhcc-------------ccccCCccCcccchHHHHHHHHhccC----CCCCcccc
Confidence 45569999988872 34567799999999999999998765 59999999
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.05 E-value=0.003 Score=66.05 Aligned_cols=51 Identities=22% Similarity=0.453 Sum_probs=40.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
...+.|-||-+.=. .|.+=||||.....||..|-.... ..+||.||.++..
T Consensus 367 sTFeLCKICaendK-----------------dvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 367 STFELCKICAENDK-----------------DVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKG 417 (563)
T ss_pred chHHHHHHhhccCC-----------------CcccccccchHHHHHHHhhcccCC--CCCCCceeeEecc
Confidence 46788999976522 466779999999999999975542 2599999999864
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.004 Score=63.48 Aligned_cols=61 Identities=30% Similarity=0.636 Sum_probs=42.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeec-CCCHhhHHHHHhhccCCC---CCCCCCcccccCcccC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQEEN 302 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~---~~dptCPLCR~~~~~~ 302 (411)
..+..|+||++.+.++. .+ .-.-++|| |-|.|-..||.+|-...+ +....||+||......
T Consensus 159 s~~k~CGICme~i~ek~--~~--------~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA--AS--------ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccc--hh--------hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 46789999999988432 11 12234555 999999999999974432 1125899999987533
No 53
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.0033 Score=70.14 Aligned_cols=49 Identities=37% Similarity=0.743 Sum_probs=37.6
Q ss_pred CCCCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 229 YVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 229 ~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
..++...+|..|.-.|. .|.| -..|||.||.+|++ .+ ...||-|+.++.
T Consensus 835 a~i~q~skCs~C~~~Ld---------------lP~V-hF~CgHsyHqhC~e---~~----~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 835 AQIFQVSKCSACEGTLD---------------LPFV-HFLCGHSYHQHCLE---DK----EDKCPKCLPELR 883 (933)
T ss_pred cceeeeeeecccCCccc---------------ccee-eeecccHHHHHhhc---cC----cccCCccchhhh
Confidence 34467789999988875 4555 57899999999999 22 247999999654
No 54
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.0033 Score=65.15 Aligned_cols=53 Identities=34% Similarity=0.717 Sum_probs=41.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCCC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPD 305 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~~ 305 (411)
..+..|.||.+.|. +.| ++||||.|-..||++-+... ..||+||..+.+...+
T Consensus 82 ~sef~c~vc~~~l~----------------~pv-~tpcghs~c~~Cl~r~ld~~----~~cp~Cr~~l~e~~~~ 134 (398)
T KOG4159|consen 82 RSEFECCVCSRALY----------------PPV-VTPCGHSFCLECLDRSLDQE----TECPLCRDELVELPAL 134 (398)
T ss_pred cchhhhhhhHhhcC----------------CCc-cccccccccHHHHHHHhccC----CCCcccccccccchHH
Confidence 47788999988886 123 56999999999999977644 5899999999864433
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.75 E-value=0.0061 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCC------CHhhHHHHHhhc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR------HVFHAECLEQTT 282 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG------HVFHaeCLeqWL 282 (411)
....|+||++.+. +..-+-.++|| |+||++|+++|-
T Consensus 25 ~~~EC~IC~~~I~--------------~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 25 CTVECQICFDRID--------------NNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred cCeeehhhhhhhh--------------cCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 3668999999987 21223355777 899999999994
No 56
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.011 Score=57.03 Aligned_cols=54 Identities=20% Similarity=0.465 Sum_probs=43.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
|....|-||.++|... ......++|.|||.|-..|+.+-+.... ..||.||...
T Consensus 1 m~~~~c~~c~~~~s~~-----------~~~~~p~~l~c~h~~c~~c~~~l~~~~~---i~cpfcR~~~ 54 (296)
T KOG4185|consen 1 MSFPECEICNEDYSSE-----------DGDHIPRVLKCGHTICQNCASKLLGNSR---ILCPFCRETT 54 (296)
T ss_pred CCCCceeecCcccccc-----------CcccCCcccccCceehHhHHHHHhcCce---eeccCCCCcc
Confidence 3456899999999832 1334677899999999999999887654 5799999997
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.32 E-value=0.011 Score=69.41 Aligned_cols=54 Identities=30% Similarity=0.525 Sum_probs=36.8
Q ss_pred CCCccccccccc-hhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCC------CCCCCcccccCcc
Q 015228 232 SDTFKCGLCERF-LSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK------SDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~-L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~------~dptCPLCR~~~~ 300 (411)
..++.|-||.-+ |. -.| .-.|.|+|+||.+|...-|..+-. .-..||||+..+.
T Consensus 3484 D~DDmCmICFTE~L~--------------AAP-~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALS--------------AAP-AIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhC--------------CCc-ceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 455678888533 32 223 347899999999999877655321 1147999999885
No 58
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0013 Score=68.33 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=42.5
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
-...|+||.+.|.+. .+.+..+.|||++|.+||++||.+.. .||.|++.+..+
T Consensus 195 lv~sl~I~~~slK~~-------------y~k~~~~~~g~~~~~~kL~k~L~~~~----kl~~~~rel~~~ 247 (465)
T KOG0827|consen 195 LVGSLSICFESLKQN-------------YDKISAIVCGHIYHHGKLSKWLATKR----KLPSCRRELPKN 247 (465)
T ss_pred HHhhhHhhHHHHHHH-------------HHHHHHHhhcccchhhHHHHHHHHHH----HhHHHHhhhhhh
Confidence 345699999999852 23456778999999999999998854 799999998643
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.014 Score=58.06 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=43.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+||...|+. -++.+.+-+|||||-.+|.++.+.+. -.||+|-..+.+
T Consensus 219 s~ryiCpvtrd~LtN-------------t~~ca~Lr~sg~Vv~~ecvEklir~D----~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTN-------------TTPCAVLRPSGHVVTKECVEKLIRKD----MVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcC-------------ccceEEeccCCcEeeHHHHHHhcccc----ccccCCCCcCcc
Confidence 467889999999982 33445455899999999999999775 589999998876
No 60
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.016 Score=56.95 Aligned_cols=52 Identities=27% Similarity=0.569 Sum_probs=39.1
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccC---CC-CCCCCCcccccCcc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK---TQ-KSDPSCPICLRLQE 300 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k---~~-~~dptCPLCR~~~~ 300 (411)
...|.+|.-.|.+ .+.+ .|.|=|+||-.||++|-.. +. .....||-|..++-
T Consensus 50 ~pNC~LC~t~La~--------------gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLAS--------------GDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCcccc--------------Ccce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3579999999983 2233 6899999999999999643 11 12358999999885
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.02 E-value=0.0084 Score=60.79 Aligned_cols=55 Identities=22% Similarity=0.544 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccC------------------CC-CCCCCC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK------------------TQ-KSDPSC 292 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k------------------~~-~~dptC 292 (411)
.....|.||+--|. +.+...+.+|-|.||..||.+.|.. -. .....|
T Consensus 113 ~p~gqCvICLygfa--------------~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavc 178 (368)
T KOG4445|consen 113 HPNGQCVICLYGFA--------------SSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVC 178 (368)
T ss_pred CCCCceEEEEEeec--------------CCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 45677999998887 5566778899999999999765532 11 122469
Q ss_pred cccccCcc
Q 015228 293 PICLRLQE 300 (411)
Q Consensus 293 PLCR~~~~ 300 (411)
|+||-.++
T Consensus 179 pVcre~i~ 186 (368)
T KOG4445|consen 179 PVCRERIK 186 (368)
T ss_pred hHhhhhcc
Confidence 99998885
No 62
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.86 E-value=0.0099 Score=48.04 Aligned_cols=46 Identities=24% Similarity=0.658 Sum_probs=23.7
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
...|.+|.+.|. ..|-...|.|+|-..||..-+.. .||+|..+.-+
T Consensus 7 lLrCs~C~~~l~----------------~pv~l~~CeH~fCs~Ci~~~~~~------~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILK----------------EPVCLGGCEHIFCSSCIRDCIGS------ECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--S----------------S-B---SSS--B-TTTGGGGTTT------B-SSS--B-S-
T ss_pred hcCCcHHHHHhc----------------CCceeccCccHHHHHHhHHhcCC------CCCCcCChHHH
Confidence 457999999887 13445689999999999887653 49999998854
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.72 E-value=0.014 Score=56.48 Aligned_cols=47 Identities=30% Similarity=0.687 Sum_probs=38.1
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
-+.|.||.++|.. ++ +..|||.|...|.-.=+.+. +.|-+|-+....
T Consensus 196 PF~C~iCKkdy~s---------------pv--vt~CGH~FC~~Cai~~y~kg----~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYES---------------PV--VTECGHSFCSLCAIRKYQKG----DECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccc---------------hh--hhhcchhHHHHHHHHHhccC----Ccceecchhhcc
Confidence 3579999999981 23 44899999999999888776 589999988753
No 64
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.68 E-value=0.022 Score=55.14 Aligned_cols=70 Identities=20% Similarity=0.485 Sum_probs=49.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCC------CC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS------PD 305 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~------~~ 305 (411)
.....|+|+...|.. -..-|.+.+|||||=..||++-- +. ..||+|-..+...+ +.
T Consensus 111 ~~~~~CPvt~~~~~~-------------~~~fv~l~~cG~V~s~~alke~k-~~----~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 111 EGRFICPVTGKEFNG-------------KHKFVYLRPCGCVFSEKALKELK-KS----KKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CceeECCCCCcccCC-------------ceeEEEEcCCCCEeeHHHHHhhc-cc----ccccccCCccccCCEEEecCCc
Confidence 466789999999872 22356677999999999999983 22 47999999997542 23
Q ss_pred cchhhhhcccCCccc
Q 015228 306 QQVFSRLKNSFPRLR 320 (411)
Q Consensus 306 qp~~~~lr~~~p~l~ 320 (411)
+ -+..++..|-.++
T Consensus 173 e-e~~~l~~~~~~~~ 186 (260)
T PF04641_consen 173 E-ELEKLRERMEERK 186 (260)
T ss_pred c-HHHHHHHHHHHHH
Confidence 3 4556665554444
No 65
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.017 Score=64.90 Aligned_cols=37 Identities=30% Similarity=0.564 Sum_probs=29.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTP 283 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~ 283 (411)
.....|.+|...|--+ .--+.||||.||.+||.+-..
T Consensus 815 ep~d~C~~C~~~ll~~---------------pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK---------------PFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcC---------------cceeeeccchHHHHHHHHHHH
Confidence 4677899999998722 234789999999999988754
No 66
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.016 Score=46.13 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=30.7
Q ss_pred ccccccccchhccCCCccccccccCCCCCceee-cCCCH-hhHHHH-HhhccCCCCCCCCCcccccCccc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHV-FHAECL-EQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHV-FHaeCL-eqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..|.||.+. ++..|| .|||. ..-+|- ++|.... ..|||||.++..
T Consensus 8 dECTICye~------------------pvdsVlYtCGHMCmCy~Cg~rl~~~~~----g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEH------------------PVDSVLYTCGHMCMCYACGLRLKKALH----GCCPICRAPIKD 55 (62)
T ss_pred cceeeeccC------------------cchHHHHHcchHHhHHHHHHHHHHccC----CcCcchhhHHHH
Confidence 679999765 233344 79997 556674 5555322 589999998864
No 67
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.13 E-value=0.043 Score=51.14 Aligned_cols=52 Identities=25% Similarity=0.485 Sum_probs=36.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCC---HhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH---VFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGH---VFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..+..|-||.+.-. +...-=.|.. .-|.+||++|+...+ ...|++|...+.-
T Consensus 6 ~~~~~CRIC~~~~~----------------~~~~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD----------------VVTNYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC----------------CccCCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeEEE
Confidence 35668999976632 1111113555 569999999998764 4789999999963
No 68
>PHA02862 5L protein; Provisional
Probab=93.88 E-value=0.048 Score=50.39 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=35.0
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...|=||.+.-. + . +-||. -.-|.+||++|+...+ ...|++|+.++.
T Consensus 2 ~diCWIC~~~~~--------------e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~--k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCD--------------E--R--NNFCGCNEEYKVVHIKCMQLWINYSK--KKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCC--------------C--C--cccccccCcchhHHHHHHHHHHhcCC--CcCccCCCCeEE
Confidence 357999987633 1 1 23664 5789999999997654 468999999995
No 69
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=93.45 E-value=0.047 Score=56.06 Aligned_cols=49 Identities=31% Similarity=0.746 Sum_probs=38.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|+||...+. | ++. ...|||.|-..|+..|+... +.||.|+....
T Consensus 19 ~~~l~C~~C~~vl~--------------~-p~~-~~~cgh~fC~~C~~~~~~~~----~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLR--------------D-PVQ-TTTCGHRFCAGCLLESLSNH----QKCPVCRQELT 67 (391)
T ss_pred cccccCcccccccc--------------C-CCC-CCCCCCcccccccchhhccC----cCCcccccccc
Confidence 45688999999987 2 111 25899999999999999873 68999988774
No 70
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.29 E-value=0.047 Score=53.33 Aligned_cols=33 Identities=33% Similarity=0.826 Sum_probs=27.5
Q ss_pred CCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 262 PVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 262 ~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+.--+..|+|||...|...-... .||+|++.+.
T Consensus 16 ~~f~LTaC~HvfC~~C~k~~~~~------~C~lCkk~ir 48 (233)
T KOG4739|consen 16 DPFFLTACRHVFCEPCLKASSPD------VCPLCKKSIR 48 (233)
T ss_pred CceeeeechhhhhhhhcccCCcc------ccccccceee
Confidence 34567799999999999887753 6999999975
No 71
>PHA03096 p28-like protein; Provisional
Probab=93.28 E-value=0.038 Score=55.03 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=35.8
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
-.|+||++...++.+ ....-+.|+ |-|+|-..|+..|-.... ...+||.|+.--
T Consensus 179 k~c~ic~e~~~~k~~----------~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~~~ 233 (284)
T PHA03096 179 KICGICLENIKAKYI----------IKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRRLN 233 (284)
T ss_pred hhcccchhhhhhhcc----------ccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccchh
Confidence 679999998875432 112344664 999999999999986643 223455554443
No 72
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.047 Score=55.16 Aligned_cols=47 Identities=30% Similarity=0.702 Sum_probs=38.3
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+.|.||.+.|. .+| |-.|||.|...|.-+=+.+. ..|++|.+..-.
T Consensus 241 Pf~c~icr~~f~---------------~pV--vt~c~h~fc~~ca~~~~qk~----~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFY---------------RPV--VTKCGHYFCEVCALKPYQKG----EKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccc---------------cch--hhcCCceeehhhhccccccC----Ccceeccccccc
Confidence 356999999987 133 44899999999999998876 489999998853
No 73
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.29 E-value=0.044 Score=55.83 Aligned_cols=53 Identities=25% Similarity=0.652 Sum_probs=42.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 304 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 304 (411)
.....|.+|...|- |. ..+.-|=|.|...||-+.|.+.+ .||.|...+....+
T Consensus 13 n~~itC~LC~GYli--------------DA--TTI~eCLHTFCkSCivk~l~~~~----~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--------------DA--TTITECLHTFCKSCIVKYLEESK----YCPTCDIVIHKTHP 65 (331)
T ss_pred ccceehhhccceee--------------cc--hhHHHHHHHHHHHHHHHHHHHhc----cCCccceeccCccc
Confidence 46678999999886 33 23447999999999999998864 89999999976543
No 74
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.24 E-value=0.023 Score=42.34 Aligned_cols=42 Identities=29% Similarity=0.642 Sum_probs=26.4
Q ss_pred ccccccchhccCCCccccccccCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCccc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
|-||++.-.+ +. .-+.||. -..|.+||++|+.... ..+|++|
T Consensus 1 CrIC~~~~~~-------------~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-------------DE--PLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-------------SS---EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCC-------------CC--ceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 7799887652 11 2245765 3679999999998643 3579998
No 75
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.091 Score=52.78 Aligned_cols=51 Identities=22% Similarity=0.552 Sum_probs=38.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
....+|++|.++=+ .|-+ ..+|||+|.--||..-+.-.- -.+||.|.....
T Consensus 237 t~~~~C~~Cg~~Pt---------------iP~~-~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPT---------------IPHV-IGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCC---------------CCee-eccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 46789999987743 2222 558999999999998876432 158999998876
No 76
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=0.17 Score=51.17 Aligned_cols=34 Identities=21% Similarity=0.620 Sum_probs=29.4
Q ss_pred eecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 266 VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 266 VLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+-+|||-....|.+..+..+. ..||-|+..+.-+
T Consensus 20 in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 20 INECGHRLCESCVDRIFSLGP---AQCPECMVILRKN 53 (300)
T ss_pred eccccchHHHHHHHHHHhcCC---CCCCcccchhhhc
Confidence 448999999999999998875 6899999988644
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.56 E-value=0.17 Score=51.84 Aligned_cols=45 Identities=33% Similarity=0.734 Sum_probs=36.1
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
..|++|...|.+ .++.--|+|.|..+||+.-|... |..||.|...
T Consensus 275 LkCplc~~Llrn----------------p~kT~cC~~~fc~eci~~al~ds---Df~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRN----------------PMKTPCCGHTFCDECIGTALLDS---DFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhC----------------cccCccccchHHHHHHhhhhhhc---cccCCCcccc
Confidence 789999998872 23333599999999999998765 4789999873
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.35 E-value=0.19 Score=52.24 Aligned_cols=49 Identities=18% Similarity=0.491 Sum_probs=37.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhh--ccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT--TPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW--L~k~~~~dptCPLCR~~~~~ 301 (411)
.+.+.|-||-+.++ -+.++||+|-..--|.-+- |=+. ..||+||.+++.
T Consensus 59 Een~~C~ICA~~~T-----------------Ys~~~PC~H~~CH~Ca~RlRALY~~----K~C~~CrTE~e~ 109 (493)
T COG5236 59 EENMNCQICAGSTT-----------------YSARYPCGHQICHACAVRLRALYMQ----KGCPLCRTETEA 109 (493)
T ss_pred cccceeEEecCCce-----------------EEEeccCCchHHHHHHHHHHHHHhc----cCCCccccccce
Confidence 46678999988877 4679999999888886432 2222 279999999975
No 79
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.33 E-value=0.24 Score=37.94 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=21.8
Q ss_pred ccccccchhccCCCccccccccCCCCCceee--cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 237 CGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 237 CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
|++|.+++..+ | ...+ +||+-+-..|....+...+ ..||-||.+|.
T Consensus 1 cp~C~e~~d~~------------d---~~~~PC~Cgf~IC~~C~~~i~~~~~---g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDET------------D---KDFYPCECGFQICRFCYHDILENEG---GRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CC------------C---TT--SSTTS----HHHHHHHTTSS----SB-TTT--B--
T ss_pred CCCcccccccC------------C---CccccCcCCCcHHHHHHHHHHhccC---CCCCCCCCCCC
Confidence 78998888621 1 2234 5899999999988886432 68999999863
No 80
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=89.49 E-value=0.21 Score=54.36 Aligned_cols=53 Identities=25% Similarity=0.537 Sum_probs=38.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~dptCPLCR~~~~~ 301 (411)
.....|.+|-++-+ | .-+-.|.|+|..-||.+.+..- ...+-+||+|-..+.-
T Consensus 534 k~~~~C~lc~d~ae--------------d---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE--------------D---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhh--------------h---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 35678999987744 1 1245899999999998776431 1123799999998863
No 81
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.48 E-value=0.15 Score=57.08 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCP 293 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCP 293 (411)
.....|+||+..+.+ |-+|--+|-+ . ..--+.|||+.|..|...|+..+. .||
T Consensus 1016 ~ri~~~~~~~~~~~~-C~~C~l~V~g---s-s~~Cg~C~Hv~H~sc~~eWf~~gd----~Cp 1068 (1081)
T KOG0309|consen 1016 VRITQCAICKGFTFQ-CAICHLAVRG---S-SNFCGTCGHVGHTSCMMEWFRTGD----VCP 1068 (1081)
T ss_pred eeeeeccccccceee-eeeEeeEeec---c-chhhccccccccHHHHHHHHhcCC----cCC
Confidence 355678888887765 3333222211 1 111358999999999999998775 677
No 82
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=0.15 Score=52.62 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.4
Q ss_pred CCccccCCCCCCCCC---CceeeecCCC
Q 015228 5 EPYWQTNTSFSPPPS---RWDFRFQSEG 29 (411)
Q Consensus 5 ep~wr~n~~~spp~s---~wd~r~~s~g 29 (411)
+=+|.-|.-+.++.+ .|+-|.|..|
T Consensus 100 ~~~~~~~~k~~~~~~~~~~~~l~~q~~~ 127 (355)
T KOG1571|consen 100 GGHWNANSKIFHEGGNEVPFFLRSQTTG 127 (355)
T ss_pred ceeeccceeeccCCCcccceeeccCCcc
Confidence 568888999999887 8888877766
No 83
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=0.23 Score=49.77 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=41.8
Q ss_pred CCCCCccccccccchhccCCCccccccccCCCCCce-eecCC-----CHhhHHHHHhhccCCCC----CCCCCcccccCc
Q 015228 230 VPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG-VLSCR-----HVFHAECLEQTTPKTQK----SDPSCPICLRLQ 299 (411)
Q Consensus 230 s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVa-VLPCG-----HVFHaeCLeqWL~k~~~----~dptCPLCR~~~ 299 (411)
+.+.+..|=||...=+ |....+ |-||. |--|..||..|+.+++. +.-.||.|..+|
T Consensus 16 ~~e~eR~CWiCF~Tde--------------Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDE--------------DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCc--------------ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 3467788999986633 333222 33775 78999999999988654 234799999999
Q ss_pred ccC
Q 015228 300 EEN 302 (411)
Q Consensus 300 ~~~ 302 (411)
--.
T Consensus 82 iiv 84 (293)
T KOG3053|consen 82 IIV 84 (293)
T ss_pred eee
Confidence 643
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.12 E-value=0.22 Score=39.27 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=25.6
Q ss_pred CceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 263 VVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 263 vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+-.+|||||+.-..|-+.+=- ..||+|-+.+.-.
T Consensus 19 ~~~~~pCgH~I~~~~f~~~rY------ngCPfC~~~~~~~ 52 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGERY------NGCPFCGTPFEFD 52 (55)
T ss_pred ccccccccceeeccccChhhc------cCCCCCCCcccCC
Confidence 345789999998888776532 3799999988743
No 85
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.25 E-value=0.22 Score=55.80 Aligned_cols=50 Identities=24% Similarity=0.428 Sum_probs=35.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
-...|..|.+... ++......+.++.|||+||..|+..-..+++ |-+|..
T Consensus 783 ~e~rc~~c~~~~l----------~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-----~~~~~~ 832 (846)
T KOG2066|consen 783 VEERCSSCFEPNL----------PSGAAFDSVVVFHCGHMYHKECLMMESLRNA-----CNIESG 832 (846)
T ss_pred ehhhhhhhccccc----------ccCcccceeeEEEccchhhhcccccHHHhcc-----cChhhc
Confidence 3457999987754 1222345688999999999999987766542 555543
No 86
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=85.40 E-value=0.46 Score=53.84 Aligned_cols=56 Identities=27% Similarity=0.707 Sum_probs=39.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCC---CCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK---SDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~---~dptCPLCR~~~~ 300 (411)
.+...|.||.+.+.... ++-.=-.|=||||..||.+|-....+ ....||-|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~-------------~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTA-------------PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccC-------------CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 46788999999987321 12112257899999999999765322 3478999996554
No 87
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=84.82 E-value=0.79 Score=42.94 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=11.5
Q ss_pred CCCCcccccCcccC
Q 015228 289 DPSCPICLRLQEEN 302 (411)
Q Consensus 289 dptCPLCR~~~~~~ 302 (411)
...||+||..+.+-
T Consensus 80 ~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 80 ELACPLCRGEVKGW 93 (162)
T ss_pred cccCccccCceece
Confidence 46899999999763
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.38 E-value=0.65 Score=44.75 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=28.0
Q ss_pred eecCCCHhhHHHHHhhccC----CCCCC---CCCcccccCcccC
Q 015228 266 VLSCRHVFHAECLEQTTPK----TQKSD---PSCPICLRLQEEN 302 (411)
Q Consensus 266 VLPCGHVFHaeCLeqWL~k----~~~~d---ptCPLCR~~~~~~ 302 (411)
-..||.-||.-||..||.. ++.-| ..||.|..++..|
T Consensus 187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 4589999999999999853 22222 5799999988643
No 90
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=0.29 Score=46.44 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=24.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhH
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHA 275 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHa 275 (411)
+.-.|.||+|+|. -.+.|+.|||-=+||.
T Consensus 176 dkGECvICLEdL~--------------~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLE--------------AGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhcc--------------CCCceeccceEEEeec
Confidence 5568999999998 3457999999999995
No 91
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.74 E-value=0.48 Score=34.89 Aligned_cols=26 Identities=27% Similarity=0.874 Sum_probs=16.0
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015228 268 SCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
.|+=-+|..|++.++.... ++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred ccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 3666799999999998754 3479988
No 92
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=83.10 E-value=0.56 Score=51.19 Aligned_cols=53 Identities=32% Similarity=0.653 Sum_probs=33.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|-||... ..|.+.....+.+=..||++||..|+..-- +.||.|-+--.
T Consensus 509 ~~gfiCe~Cq~~---------~iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R~q~ 561 (580)
T KOG1829|consen 509 GKGFICELCQHN---------DIIYPFETRNTRRCSTCLAVFHKKCLRRKS-------PCCPRCERRQK 561 (580)
T ss_pred cCeeeeeeccCC---------CcccccccccceeHHHHHHHHHHHHHhccC-------CCCCchHHHHH
Confidence 456778888322 123333333455567899999999986532 35999976554
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=82.89 E-value=0.62 Score=51.50 Aligned_cols=48 Identities=27% Similarity=0.712 Sum_probs=37.5
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
..|.||.+ ++ . .-+.+|||.|-.+|+.+-+..... ..||+|+..+.++
T Consensus 455 ~~c~ic~~-~~---------------~--~~it~c~h~~c~~c~~~~i~~~~~--~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LD---------------S--FFITRCGHDFCVECLKKSIQQSEN--APCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cc---------------c--ceeecccchHHHHHHHhccccccC--CCCcHHHHHHHHH
Confidence 78999998 33 2 224589999999999999876553 3799999998653
No 94
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.14 E-value=0.92 Score=47.96 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=39.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccC----CCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k----~~~~dptCPLCR~~~~ 300 (411)
.....|.||.+... .......|||+|||...|+...+.- ...+...||-|.-.-.
T Consensus 182 ~slf~C~ICf~e~~--------------G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 182 NSLFDCCICFEEQM--------------GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred hhcccceeeehhhc--------------CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 46678999998865 2234668899999999999988753 2223357887665543
No 95
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.85 E-value=0.71 Score=46.21 Aligned_cols=53 Identities=19% Similarity=0.521 Sum_probs=39.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceee--c-CCCHhhHHHHHhhccCCCCCCCCCc--ccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--S-CRHVFHAECLEQTTPKTQKSDPSCP--ICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--P-CGHVFHaeCLeqWL~k~~~~dptCP--LCR~~~~~ 301 (411)
+.+..|+||..+-- -.|.+..| | |=|-....|+++.|..+. ..|| -|.+-+..
T Consensus 8 ~~d~~CPvCksDrY--------------LnPdik~linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~kILRK 65 (314)
T COG5220 8 MEDRRCPVCKSDRY--------------LNPDIKILINPECYHRMCESCVDRIFSRGP---AQCPYKGCGKILRK 65 (314)
T ss_pred hhcccCCccccccc--------------cCCCeEEEECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHHHHHH
Confidence 45668999986643 22344444 5 999999999999999876 5799 88877653
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=0.66 Score=51.52 Aligned_cols=87 Identities=18% Similarity=0.441 Sum_probs=53.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC---CCCc-c
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN---SPDQ-Q 307 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~---~~~q-p 307 (411)
.+...|.||+..|... -. .-..|-|||+...+|++.-... +|| |+.+.... .-+. .
T Consensus 9 ~~~l~c~ic~n~f~~~------------~~-~Pvsl~cghtic~~c~~~lyn~------scp-~~~De~~~~~~~~e~p~ 68 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQ------------RL-EPVSLQCGHTICGHCVQLLYNA------SCP-TKRDEDSSLMQLKEEPR 68 (861)
T ss_pred HHHhhchHHHHHHHHH------------hc-CcccccccchHHHHHHHhHhhc------cCC-CCccccchhcChhhcch
Confidence 3567899997666510 11 1226789999999999988753 799 77665421 1122 2
Q ss_pred hhhhhcccCCc--cccccCCCC-CCC--CCCCCCCc
Q 015228 308 VFSRLKNSFPR--LRQSCDNGQ-SRP--WGCPQAGG 338 (411)
Q Consensus 308 ~~~~lr~~~p~--l~~~~~~G~-sr~--wg~a~ag~ 338 (411)
-+.-||..+++ +.=+.+-|. .-+ |.|-+-||
T Consensus 69 n~alL~~~~d~~~~~~a~~~g~~ispe~~~~~qlg~ 104 (861)
T KOG3161|consen 69 NYALLRREHDAQIVHIAMEAGLRISPEQWSSLQLGD 104 (861)
T ss_pred hHHHHHhhcchhhhhcccCCcccCCHHHHHHHHHHH
Confidence 35556666777 444445563 222 88888774
No 97
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.83 E-value=1 Score=42.45 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=33.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
..+..|.||.+. + .|.+.....++.=..|+-+||.+|..+ . .||-|.+-
T Consensus 150 ~kGfiCe~C~~~-~--------~IfPF~~~~~~~C~~C~~v~H~~C~~~----~-----~CpkC~R~ 198 (202)
T PF13901_consen 150 QKGFICEICNSD-D--------IIFPFQIDTTVRCPKCKSVFHKSCFRK----K-----SCPKCARR 198 (202)
T ss_pred hCCCCCccCCCC-C--------CCCCCCCCCeeeCCcCccccchhhcCC----C-----CCCCcHhH
Confidence 467889999654 2 233333434555557999999999883 2 59999764
No 98
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=78.47 E-value=1.6 Score=41.68 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=36.7
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|-||........ .+ .-+.||. +..|..|++.|+..+. +..|.+|...+.
T Consensus 76 ~~~~~cRIc~~~~~~~~----------~~---~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESN----------GL---LLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFFI 134 (323)
T ss_pred CCCCcEEEEeccccccc----------cc---ccccCccccCcHHHHHHHHHHhhhcccc--Ceeeecccccce
Confidence 34678999987654110 00 1133554 6679999999998543 468999999775
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.71 E-value=1.1 Score=50.29 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=24.0
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcc--cccCccc
Q 015228 268 SCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQEE 301 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPL--CR~~~~~ 301 (411)
.|||.-|.+||.+|+.+.. .||. |-.....
T Consensus 798 ~C~H~gH~sh~~sw~~~~s----~ca~~~C~~~c~~ 829 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKAS----PCAKSICPHLCHY 829 (839)
T ss_pred cccccccHHHHHHHHhcCC----CCccccCCccccc
Confidence 5999999999999998864 6776 7665543
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.30 E-value=2 Score=33.85 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=24.9
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhh
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQT 281 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqW 281 (411)
....|.+|.+.|. +.+.+.+= .||=.||.+|-+.-
T Consensus 4 ~~~~C~~Cg~~~~--------------~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFK--------------DGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCccc--------------CCCCEEECCCCCCcccHHHHhhC
Confidence 3567999999997 22233333 59999999997654
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=1.3 Score=45.66 Aligned_cols=44 Identities=27% Similarity=0.655 Sum_probs=31.0
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
...|.-|...+.- --+.+||-|||..+|...=- |..||+|--.+
T Consensus 90 VHfCd~Cd~PI~I----------------YGRmIPCkHvFCl~CAr~~~------dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI----------------YGRMIPCKHVFCLECARSDS------DKICPLCDDRV 133 (389)
T ss_pred eEeecccCCccee----------------eecccccchhhhhhhhhcCc------cccCcCcccHH
Confidence 3568888777650 13466999999999976432 24799997665
No 102
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.11 E-value=0.68 Score=47.29 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=28.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHh-hHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVF-HAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVF-HaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
....|+||.+.-. | --.|+|||.- ..+|-... ..|||||+-+..
T Consensus 299 ~~~LC~ICmDaP~--------------D---CvfLeCGHmVtCt~CGkrm--------~eCPICRqyi~r 343 (350)
T KOG4275|consen 299 TRRLCAICMDAPR--------------D---CVFLECGHMVTCTKCGKRM--------NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHHhcCCc--------------c---eEEeecCcEEeehhhcccc--------ccCchHHHHHHH
Confidence 3678999986533 1 2368999963 44454333 269999987653
No 103
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=73.38 E-value=2.4 Score=48.46 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=36.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|-||..+=.+ |.+.-. ||. -..|.+||-+|+.... +..|-+|..++.
T Consensus 10 ~d~~~CRICr~e~~~-------------d~pLfh--PCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIR-------------DDPLFH--PCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCC-------------CCcCcc--cccccchhHHHHHHHHHHHHhcCC--Ccceeeecceee
Confidence 366789999755332 333333 443 3589999999997543 467999999885
No 104
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.28 E-value=5.7 Score=41.30 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.2
Q ss_pred cCCCHhhHHHHHhhccCCCC---------CCCCCcccccCcc
Q 015228 268 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 300 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~---------~dptCPLCR~~~~ 300 (411)
-|......+|+-+||..++. ..-+||+||+...
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 36667799999999976652 2258999999864
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.75 E-value=1.9 Score=41.34 Aligned_cols=30 Identities=37% Similarity=0.737 Sum_probs=21.9
Q ss_pred CceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 263 VVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 263 vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.|.+|||.|. +-..|-+. + ..||+|+....
T Consensus 170 ~VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~~~ 200 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES-L-------RICPICRSPKT 200 (207)
T ss_pred eEEeecccceEeccccccc-C-------ccCCCCcChhh
Confidence 3668899987 55667665 3 36999998764
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=3.9 Score=43.01 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=38.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...+.|+|=.+.=+ .++|.. .|.||||.-.+-|++...... +...||-|=....
T Consensus 332 HSvF~CPVlKeqts-------------deNPPm-~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 332 HSVFICPVLKEQTS-------------DENPPM-MLICGHVISKDALNRLSKNGS-QSFKCPYCPVEQL 385 (394)
T ss_pred cceeecccchhhcc-------------CCCCCe-eeeccceecHHHHHHHhhCCC-eeeeCCCCCcccC
Confidence 35678998765533 245554 789999999999999876543 2467999965543
No 107
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.42 E-value=4.3 Score=40.95 Aligned_cols=53 Identities=17% Similarity=0.407 Sum_probs=38.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENS 303 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~ 303 (411)
.....|+|=.-++.-+ -.-+....|||||-+.-|.+.-. ..|++|...|.+.+
T Consensus 109 ~a~fiCPvtgleMng~-------------~~F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGK-------------YRFCALRCCGCVFSERALKEIKA------SVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecce-------------EEEEEEeccceeccHHHHHHhhh------ccccccCCcccccC
Confidence 3567899887666511 11244568999999999998853 37999999998653
No 108
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=64.16 E-value=3 Score=49.43 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=38.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
....|.||++.+.. .-++..|||.|-..|+..|+... ..||+|+...+
T Consensus 1152 ~~~~c~ic~dil~~----------------~~~I~~cgh~~c~~c~~~~l~~~----s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRN----------------QGGIAGCGHEPCCRCDELWLYAS----SRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHh----------------cCCeeeechhHhhhHHHHHHHHh----ccCcchhhhhh
Confidence 55689999999871 12366899999999999999765 48999997665
No 109
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.65 E-value=4.2 Score=42.85 Aligned_cols=47 Identities=21% Similarity=0.418 Sum_probs=36.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCce-eecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVG-VLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVa-VLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.++..|+||... +..+ .-||+|-=...||.|-+...+ .|-.|+..+.
T Consensus 420 sEd~lCpICyA~------------------pi~Avf~PC~H~SC~~CI~qHlmN~k----~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAG------------------PINAVFAPCSHRSCYGCITQHLMNCK----RCFFCKTTVI 467 (489)
T ss_pred cccccCcceecc------------------cchhhccCCCCchHHHHHHHHHhcCC----eeeEecceee
Confidence 577789999532 1122 349999999999999998765 7999998875
No 110
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=62.27 E-value=6.4 Score=43.85 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccccc-----CCCCcccccccccCCCcccCCCCCCChhhhhhhhccccccC----
Q 015228 122 GTSANPYSRGSTSSRSDSSESEPKVKSCIS-----SHCNFSSRLSFMSKPIYPLSFPTQTSNREAIDSASTVLSED---- 192 (411)
Q Consensus 122 g~s~~~~s~~s~ss~s~ss~~~~~~k~~~s-----~~RN~~~rrsfmskpi~pL~f~~~~~~~ea~~~a~s~lse~---- 192 (411)
.++....|+.+.+|+++++|-.-+.+-..+ .+.-|.--.-.|.++...++|++.+.-+.|+..+ +|+-+
T Consensus 65 a~s~sSeS~s~s~S~~~g~E~~a~~Rdag~~~~ep~aA~~~~~~~~L~~~~r~~~f~~~~~hRKAi~ks--glqhlAp~~ 142 (1004)
T KOG0782|consen 65 AVSVSSESSSSSASDSEGDEDSATGRDAGNNHLEPSAARFSISNPDLTNCQRKQMFPEMADHRKAIAKS--GLQHLAPDQ 142 (1004)
T ss_pred cccccccccccccccccccccCCCccccccCCCCccccccccCChhHHHHHHhcccHHhhhHHHHHHHH--HHhhcCCCC
Confidence 455555677777777777773222221110 1111111122366677778899998888887664 55554
Q ss_pred CCCCc-------cccccccCCCCChhhhcccCC
Q 015228 193 DTSTP-------QWEAHRWSSASSSVDFADVSE 218 (411)
Q Consensus 193 ~~s~s-------~r~~~~ws~asS~~dl~di~E 218 (411)
+++.+ -|...+|+.+-.+++-++++.
T Consensus 143 pts~Pv~~~~ke~Rst~dWsE~a~~gEHvWlet 175 (1004)
T KOG0782|consen 143 PTSNPVNKHAKEPRSTRDWSEDAGDGEHVWLET 175 (1004)
T ss_pred CCCcchhhcccCccchhhhhhccCCceeEEEec
Confidence 22211 145678887766666666553
No 111
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=62.25 E-value=0.75 Score=33.43 Aligned_cols=30 Identities=30% Similarity=0.693 Sum_probs=21.4
Q ss_pred cCCCHhhHHHHHhhccCCC--CCCCCCccccc
Q 015228 268 SCRHVFHAECLEQTTPKTQ--KSDPSCPICLR 297 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~--~~dptCPLCR~ 297 (411)
.|+-.||..|+..-..... ..+..||.|+.
T Consensus 19 ~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 19 SCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp TTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 6999999999977654211 12478999864
No 112
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=57.05 E-value=3.5 Score=43.54 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=0.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCC--CCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQK--SDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~--~dptCPLCR~~~~ 300 (411)
....|+|=+..|.= |--..+.+.....+-| -|.||||+-.+ .|-.+.+. ...+||+|+..-.
T Consensus 276 ~rpQCPVglnTL~f--p~~~~~~~~~~~qP~V-Yl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 276 GRPQCPVGLNTLVF--PSKSRKDVPDERQPWV-YLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cCCCCCcCCCcccc--ccccccccccccCcee-eccccceeeec---ccccccccccccccCCCccccCC
Confidence 34568877776641 1111111221222222 57899997543 57654321 2468999997643
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=54.67 E-value=9 Score=40.30 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+++-|++|.+++.- .|. -.---+||--...-|-.-.-+.- +..||-||+.+.
T Consensus 13 eed~cplcie~mdi------------tdk-nf~pc~cgy~ic~fc~~~irq~l---ngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDI------------TDK-NFFPCPCGYQICQFCYNNIRQNL---NGRCPACRRKYD 64 (480)
T ss_pred ccccCccccccccc------------ccC-CcccCCcccHHHHHHHHHHHhhc---cCCChHhhhhcc
Confidence 44559999998861 111 11223688766666644433221 268999999986
No 114
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.62 E-value=8.1 Score=39.89 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=25.4
Q ss_pred cCCCHhhHHHHHhhccCCCC---------CCCCCcccccCcc
Q 015228 268 SCRHVFHAECLEQTTPKTQK---------SDPSCPICLRLQE 300 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~---------~dptCPLCR~~~~ 300 (411)
-|......+||-+|+-.++. ..-+||+||+...
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 36777889999999976542 2368999999875
No 115
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=50.59 E-value=11 Score=40.90 Aligned_cols=35 Identities=23% Similarity=0.615 Sum_probs=28.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccC
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK 284 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k 284 (411)
++..|+||...|++ . -+|||+|-....|....+..
T Consensus 3 eelkc~vc~~f~~e----------------p-iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE----------------P-IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccC----------------c-eEeecccHHHHHHHHhhccc
Confidence 56789999999981 2 38999999999999877654
No 116
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=49.04 E-value=9.9 Score=28.73 Aligned_cols=33 Identities=30% Similarity=0.652 Sum_probs=11.6
Q ss_pred CceeecCCCHhhHHHH--HhhccCCC-CCCCCCcccccC
Q 015228 263 VVGVLSCRHVFHAECL--EQTTPKTQ-KSDPSCPICLRL 298 (411)
Q Consensus 263 vVaVLPCGHVFHaeCL--eqWL~k~~-~~dptCPLCR~~ 298 (411)
.++-..|.|+ +|. +.||.... .....||+|.+.
T Consensus 15 P~Rg~~C~H~---~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 15 PVRGKNCKHL---QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp EEEETT--SS-----EEHHHHHHHHHHS---B-TTT---
T ss_pred CccCCcCccc---ceECHHHHHHHhhccCCeECcCCcCc
Confidence 3555678887 343 23433211 112679999863
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.17 E-value=13 Score=42.80 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=39.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeec---CCCHhhHHHHHhhccCC--CCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS---CRHVFHAECLEQTTPKT--QKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP---CGHVFHaeCLeqWL~k~--~~~dptCPLCR~~~~ 300 (411)
.+...|.||...+.. +.+-...+| |+|-|.-.||..|+..- ......|++|..-++
T Consensus 94 a~s~Ss~~C~~E~S~-------------~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSP-------------DVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccchhheecCC-------------cccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 466778888877761 223344555 99999999999998642 122357999988775
No 118
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=45.20 E-value=15 Score=37.23 Aligned_cols=44 Identities=27% Similarity=0.643 Sum_probs=33.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecC--CCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSC--RHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPC--GHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|+||.+.|. +. ++.| ||..-..|-.+-. ..||.|+..++
T Consensus 46 ~~lleCPvC~~~l~----------------~P--i~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS----------------PP--IFQCDNGHLACSSCRTKVS-------NKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCc----------------cc--ceecCCCcEehhhhhhhhc-------ccCCccccccc
Confidence 57789999999987 12 3455 7888888876443 36999999998
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=11 Score=39.19 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=36.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCC--CCCCCCc--ccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCP--ICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~--~~dptCP--LCR~~~~ 300 (411)
.....|.||...+.. .+...- ++.|+|-|-.+|+.+-+.... ...+.|| -|...+.
T Consensus 144 ~~~~~C~iC~~e~~~------------~~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 144 LPKEECGICFVEDPE------------AEDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccccCccCcccccc------------HhhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 356789999944331 122222 778999999999999887442 2346776 4555553
No 120
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=44.05 E-value=16 Score=38.14 Aligned_cols=59 Identities=22% Similarity=0.401 Sum_probs=33.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCH--hhHHHHHhhccCCCC--CCCCCcccccCc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV--FHAECLEQTTPKTQK--SDPSCPICLRLQ 299 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV--FHaeCLeqWL~k~~~--~dptCPLCR~~~ 299 (411)
....|++=+..|.- |--.++++..... .-.-|.|||| || .|-.+.+. +...||+|+..-
T Consensus 289 ~RPQCPVglnTL~~--P~~~~~~~~~~~Q-P~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~g 351 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAF--PSKRRKRVVDEKQ-PWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVVG 351 (429)
T ss_pred cCCCCCcccceeec--ccccccccccccC-CeEEEecccccccc-----ccccccccCcccCcCCeeeeec
Confidence 34568888887762 1111222222222 3336899998 56 47655432 246899999653
No 121
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=43.48 E-value=24 Score=30.01 Aligned_cols=57 Identities=18% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
...+.|-||.+++-- ..+++ .-|+.--|+--.-..|.+-=.+..+ ..||.|+..+..
T Consensus 7 ~~~qiCqiCGD~VGl---------~~~Ge-~FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~ykr 63 (80)
T PF14569_consen 7 LNGQICQICGDDVGL---------TENGE-VFVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYKR 63 (80)
T ss_dssp -SS-B-SSS--B--B----------SSSS-B--S-SSS-----HHHHHHHHHTS----SB-TTT--B---
T ss_pred cCCcccccccCcccc---------CCCCC-EEEEEcccCCccchhHHHHHhhcCc---ccccccCCCccc
Confidence 577899999998761 11222 2244556887788899988777665 589999998875
No 122
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.44 E-value=7.8 Score=41.07 Aligned_cols=39 Identities=15% Similarity=0.324 Sum_probs=0.0
Q ss_pred CceeecCCCHhhHHHHHhhccCC-----CCCCCCCcccccCccc
Q 015228 263 VVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 301 (411)
Q Consensus 263 vVaVLPCGHVFHaeCLeqWL~k~-----~~~dptCPLCR~~~~~ 301 (411)
.-+--||||+--+....-|-+-. +.-...||.|...+..
T Consensus 359 thaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 359 THAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp --------------------------------------------
T ss_pred ceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 34455999999999999995431 1123689999999975
No 123
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=14 Score=38.53 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=36.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|+||++.-. +| ..+-.-|-||.-.|+-+.+.+- ..||+=..+..
T Consensus 298 ~~~~~CpvClk~r~---------------Np-tvl~vSGyVfCY~Ci~~Yv~~~----~~CPVT~~p~~ 346 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ---------------NP-TVLEVSGYVFCYPCIFSYVVNY----GHCPVTGYPAS 346 (357)
T ss_pred CccccChhHHhccC---------------CC-ceEEecceEEeHHHHHHHHHhc----CCCCccCCcch
Confidence 46678999987744 11 2244679999999999999865 48998666654
No 124
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=42.19 E-value=24 Score=32.70 Aligned_cols=54 Identities=17% Similarity=0.527 Sum_probs=34.5
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHH-HhhccCCCCCCCCCcccccCccc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL-EQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCL-eqWL~k~~~~dptCPLCR~~~~~ 301 (411)
....|-||.|.-. +++.+.+++ =||=..-.-|- +.|- .-. ..|.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~------ee~FLKPne-------CCgY~iCn~Cya~LWK-~~~-~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSA------EERFLKPNE-------CCGYSICNACYANLWK-FCN-LYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccc------hhhcCCccc-------ccchHHHHHHHHHHHH-Hcc-cCCCCCcccccccc
Confidence 4567999988755 233333332 38876666665 5563 322 34899999999864
No 125
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.15 E-value=7.9 Score=26.83 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=8.1
Q ss_pred CCCcccccCcc
Q 015228 290 PSCPICLRLQE 300 (411)
Q Consensus 290 ptCPLCR~~~~ 300 (411)
..||+|...-.
T Consensus 18 ~~CP~Cg~~~~ 28 (33)
T cd00350 18 WVCPVCGAPKD 28 (33)
T ss_pred CcCcCCCCcHH
Confidence 47999987543
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.90 E-value=20 Score=37.17 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=35.1
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..|+||.+++.. .+...+ --+|||..+..|+..-... +..||.|++++..
T Consensus 250 ~s~p~~~~~~~~------------~d~~~l-P~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDL------------TDSNFL-PCPCGFRLCLFCHKTISDG----DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccc------------cccccc-cccccccchhhhhhccccc----CCCCCccCCcccc
Confidence 569999998751 122111 2379999888888877654 3689999988864
No 127
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=41.18 E-value=12 Score=34.82 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=24.7
Q ss_pred hhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015228 273 FHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 273 FHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
||..||+.=|..-...+..||.|......+
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~ 31 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSGQ 31 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCCC
Confidence 899999999877666678999999876543
No 128
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=38.57 E-value=30 Score=40.73 Aligned_cols=56 Identities=21% Similarity=0.487 Sum_probs=39.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...+.|-||.+++.- ..+++ +=|+---|+--....|.+-=..+.+ ..||.|+..+.
T Consensus 13 ~~~~~c~iCGd~vg~---------~~~Ge-~FVAC~eC~fpvCr~cyeye~~~g~---~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGV---------KEDGQ-PFVACHVCGFPVCKPCYEYERSEGN---QCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCc---------CCCCC-EEEEeccCCCccccchhhhhhhcCC---ccCCccCCchh
Confidence 477899999999761 11222 2344456777788999966555544 68999999997
No 129
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=37.65 E-value=27 Score=26.19 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=9.5
Q ss_pred Cccccccccchh
Q 015228 234 TFKCGLCERFLS 245 (411)
Q Consensus 234 ~~~CaICle~L~ 245 (411)
...|+.|.+.|+
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 467999998765
No 130
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.19 E-value=16 Score=39.16 Aligned_cols=45 Identities=27% Similarity=0.606 Sum_probs=33.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|.||.+... .++-+|- |.-|+.+|+..+. .||+|......
T Consensus 477 ~~~~~~~~~~~~~~------------------~~~~~~~---~~~~l~~~~~~~~----~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEMS------------------ARITPCS---HALCLRKWLYVQE----VCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHHH------------------hcccccc---chhHHHhhhhhcc----ccCCCchhhhc
Confidence 35567999976651 2344666 9999999998764 89999988865
No 131
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=7.1 Score=37.85 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=39.4
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeec--------CCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS--------CRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP--------CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
....|.||...|.. +...-+-+++. |||..-..|++.-+.... ..||.|+...
T Consensus 206 ~~~~c~ic~~~~~~-----------n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~~ 266 (296)
T KOG4185|consen 206 IEKLCEICERIYSE-----------NDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHHhhc-----------cccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCccccee
Confidence 34679999988872 11223445667 999999999999987654 6899999753
No 132
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.91 E-value=31 Score=36.22 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=28.2
Q ss_pred ceeecCCCHhhHHHHHhhccCC-----CCCCCCCcccccCccc
Q 015228 264 VGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 301 (411)
Q Consensus 264 VaVLPCGHVFHaeCLeqWL~k~-----~~~dptCPLCR~~~~~ 301 (411)
-+--||||+--+.=..-|-+-. +..+..||.|...+..
T Consensus 373 haF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 373 HAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3445999999998888895431 2245799999998864
No 133
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=35.16 E-value=22 Score=37.10 Aligned_cols=52 Identities=25% Similarity=0.538 Sum_probs=36.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
...+.|++=.+.-+ .+++.+ .|.||||.-.+-|++--..+ .....||-|-..
T Consensus 334 Hs~FiCPVlKe~~t-------------~ENpP~-ml~CgHVIskeal~~LS~nG-~~~FKCPYCP~~ 385 (396)
T COG5109 334 HSLFICPVLKELCT-------------DENPPV-MLECGHVISKEALSVLSQNG-VLSFKCPYCPEM 385 (396)
T ss_pred cceeeccccHhhhc-------------ccCCCe-eeeccceeeHHHHHHHhhcC-cEEeeCCCCCcc
Confidence 45678988766544 234444 78999999999999875543 234679999544
No 134
>PLN02189 cellulose synthase
Probab=34.75 E-value=29 Score=40.86 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=39.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...+.|.||.+++.- ...++ .=|+---|+--....|.|-=-++.+ ..||.|+..|.
T Consensus 32 ~~~~~C~iCgd~vg~---------~~~g~-~fvaC~~C~fpvCr~Cyeyer~eg~---q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGL---------TVDGD-LFVACNECGFPVCRPCYEYERREGT---QNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCc---------CCCCC-EEEeeccCCCccccchhhhhhhcCC---ccCcccCCchh
Confidence 567799999999861 11122 2244445888788999976555554 68999999997
No 135
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=34.18 E-value=16 Score=41.00 Aligned_cols=50 Identities=22% Similarity=0.609 Sum_probs=38.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
-...|+||...+.++ ..+.|-|.|-.-|+..-|...+ ..-.||+|+....
T Consensus 20 k~lEc~ic~~~~~~p-----------------~~~kc~~~~l~~~~n~~f~~~~-~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEP-----------------SLLKCDHIFLKFCLNKLFESKK-GPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeecc-----------------chhhhhHHHHhhhhhceeeccC-ccccchhhhhhhh
Confidence 457899999998721 2568999999999998776543 1357999998876
No 136
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=31.70 E-value=42 Score=34.12 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=34.0
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhc-cCCCC----CCCCCcccccCcc
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTT-PKTQK----SDPSCPICLRLQE 300 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL-~k~~~----~dptCPLCR~~~~ 300 (411)
..|-||.+.+.+... .+..... --|+=++|..||-.-+ ..... ....||.|.+.+.
T Consensus 183 ~~celc~~ei~e~~~------~~a~c~~----~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDW------SRATCPN----PDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccc------eeccCCC----CCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999999853221 0111110 1399999999998833 22211 1257999999664
No 137
>PLN02436 cellulose synthase A
Probab=30.65 E-value=40 Score=39.89 Aligned_cols=57 Identities=19% Similarity=0.448 Sum_probs=39.2
Q ss_pred CCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 231 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 231 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
....+.|-||.+++-- ...++ .=|+---|+--....|.|-=-++.+ ..||.|+..|.
T Consensus 33 ~~~~~iCqICGD~Vg~---------t~dGe-~FVACn~C~fpvCr~Cyeyer~eg~---~~Cpqckt~Y~ 89 (1094)
T PLN02436 33 ELSGQTCQICGDEIEL---------TVDGE-PFVACNECAFPVCRPCYEYERREGN---QACPQCKTRYK 89 (1094)
T ss_pred ccCCccccccccccCc---------CCCCC-EEEeeccCCCccccchhhhhhhcCC---ccCcccCCchh
Confidence 3577899999999861 11122 1243445777788999976555544 68999999997
No 138
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=30.63 E-value=18 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.720 Sum_probs=22.2
Q ss_pred eecCC-CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 266 VLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 266 VLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...|. |..-..||...+...+ .||||..++.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~----~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSD----RCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSS----EETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhcccc----CCCcccCcCc
Confidence 45676 9999999999998775 8999998765
No 139
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=30.32 E-value=49 Score=39.16 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=38.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...+.|-||.+++.- ...++ .=|+---||---...|.|-=-.+.+ ..||.|+..|.
T Consensus 15 ~~~qiCqICGD~vg~---------~~~Ge-~FVAC~eC~FPVCrpCYEYEr~eG~---q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGK---------TVDGE-PFVACDVCAFPVCRPCYEYERKDGN---QSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCc---------CCCCC-EEEEeccCCCccccchhhhhhhcCC---ccCCccCCchh
Confidence 577899999999761 11222 1244446777788899975555443 68999999996
No 140
>PRK11827 hypothetical protein; Provisional
Probab=29.98 E-value=17 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=19.6
Q ss_pred CCCcccccCcccCCCCcch-------hhhhcccCCcccc
Q 015228 290 PSCPICLRLQEENSPDQQV-------FSRLKNSFPRLRQ 321 (411)
Q Consensus 290 ptCPLCR~~~~~~~~~qp~-------~~~lr~~~p~l~~ 321 (411)
..||+|+..+.-....+.+ ..-+|+++|.|-.
T Consensus 9 LaCP~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL~ 47 (60)
T PRK11827 9 IACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLE 47 (60)
T ss_pred eECCCCCCcCeEcCCCCeEECCccCeeccccCCccccCH
Confidence 4799999988643333333 3445666666653
No 141
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.80 E-value=11 Score=28.35 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=15.1
Q ss_pred HHHhhccCCCCCCCCCcccccCcccCCCCcchhhh
Q 015228 277 CLEQTTPKTQKSDPSCPICLRLQEENSPDQQVFSR 311 (411)
Q Consensus 277 CLeqWL~k~~~~dptCPLCR~~~~~~~~~qp~~~~ 311 (411)
-+.+++..-...+..||+|.+.+.+..- +-++..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~e~~-~~li~~ 41 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDEEHR-QELIKK 41 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-HHHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCHHHH-HHHHHH
Confidence 3445544332233489999999975333 444433
No 142
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=29.72 E-value=27 Score=34.57 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=37.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|-+|.+.+-| .++--.||=-||..|++..|.+. +.||-|..-+..
T Consensus 179 dnlk~Cn~Ch~LvIq----------------g~rCg~c~i~~h~~c~qty~q~~----~~cphc~d~w~h 228 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQ----------------GIRCGSCNIQYHRGCIQTYLQRR----DICPHCGDLWTH 228 (235)
T ss_pred HHHHHHhHhHHHhhe----------------eeccCcccchhhhHHHHHHhccc----CcCCchhcccCc
Confidence 455689999877642 23344788889999999999884 589999766653
No 143
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=28.42 E-value=12 Score=38.70 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=10.1
Q ss_pred cCCCHhhHHHHHh
Q 015228 268 SCRHVFHAECLEQ 280 (411)
Q Consensus 268 PCGHVFHaeCLeq 280 (411)
.=-||||.+|..-
T Consensus 111 Aqd~VYHl~CF~C 123 (383)
T KOG4577|consen 111 AQDFVYHLHCFAC 123 (383)
T ss_pred hhcceeehhhhhh
Confidence 4579999999643
No 144
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=27.12 E-value=10 Score=40.63 Aligned_cols=41 Identities=27% Similarity=0.587 Sum_probs=0.0
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015228 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 304 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 304 (411)
++|..|.+.+. .+|++ .||-+||..| .+|-+|.+.++...+
T Consensus 335 ekC~~Cg~~I~-------d~iLr----------A~GkayHp~C------------F~Cv~C~r~ldgipF 375 (468)
T KOG1701|consen 335 EKCNKCGEPIM-------DRILR----------ALGKAYHPGC------------FTCVVCARCLDGIPF 375 (468)
T ss_pred HHHhhhhhHHH-------HHHHH----------hcccccCCCc------------eEEEEeccccCCccc
No 145
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=27.11 E-value=21 Score=33.09 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=27.2
Q ss_pred cCCCHhhHHHHHhhccCCC-------CCCCCCcccccCcccCCCCcchhhh
Q 015228 268 SCRHVFHAECLEQTTPKTQ-------KSDPSCPICLRLQEENSPDQQVFSR 311 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~-------~~dptCPLCR~~~~~~~~~qp~~~~ 311 (411)
.|||.| +.||.... ..-.+||+|-.....+..--|.+.+
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~lmAP~v~~ 54 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSKALMAPAVAT 54 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEeeecCCCeecC
Confidence 467887 78987532 1236899999999887666666543
No 146
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=25.45 E-value=36 Score=34.40 Aligned_cols=48 Identities=29% Similarity=0.528 Sum_probs=31.2
Q ss_pred ccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015228 241 ERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 241 le~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
.+.|.-++||+-..|+- |+ ..-.|||||-.+=|.+.+.... ...||+=
T Consensus 172 ~e~fs~rdPis~~~I~n----Pv-iSkkC~HvydrDsI~~~l~~~~--~i~CPv~ 219 (262)
T KOG2979|consen 172 QEVFSNRDPISKKPIVN----PV-ISKKCGHVYDRDSIMQILCDEI--TIRCPVL 219 (262)
T ss_pred hhhhcccCchhhhhhhc----hh-hhcCcCcchhhhhHHHHhccCc--eeecccc
Confidence 44455566666443332 33 3458999999999999997632 2468863
No 147
>PLN02400 cellulose synthase
Probab=23.87 E-value=62 Score=38.41 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=38.5
Q ss_pred CCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 231 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 231 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
....+.|-||.+++-- ...++ .=|+---|+---..-|.|-=-.+.+ ..||.|+..+.
T Consensus 33 ~~~gqiCqICGD~VG~---------t~dGe-~FVAC~eCaFPVCRpCYEYERkeGn---q~CPQCkTrYk 89 (1085)
T PLN02400 33 NLNGQICQICGDDVGV---------TETGD-VFVACNECAFPVCRPCYEYERKDGT---QCCPQCKTRYR 89 (1085)
T ss_pred ccCCceeeecccccCc---------CCCCC-EEEEEccCCCccccchhheecccCC---ccCcccCCccc
Confidence 3577899999999862 11222 2244446777688888865444443 68999999997
No 148
>PLN02195 cellulose synthase A
Probab=23.64 E-value=59 Score=38.19 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=38.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015228 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
..+.|.||.+++.- ...++ +=|+---|+---...|.|-=-.+.+ ..||.|+..+.
T Consensus 5 ~~~~c~~cgd~~~~---------~~~g~-~fvaC~eC~~pvCrpCyeyer~eg~---q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGV---------DSNGE-AFVACHECSYPLCKACLEYEIKEGR---KVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCc---------CCCCC-eEEEeccCCCccccchhhhhhhcCC---ccCCccCCccc
Confidence 45689999998761 12222 2355557888888999975554443 68999999998
No 149
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=48 Score=34.78 Aligned_cols=54 Identities=24% Similarity=0.486 Sum_probs=37.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCC----CCCc--ccccCccc
Q 015228 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSD----PSCP--ICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~d----ptCP--LCR~~~~~ 301 (411)
.....|.||.+.+. . .+..+.|||.|-..|...-+.++-..+ .+|| -|...+++
T Consensus 68 ~~~~~c~ic~~~~~--------------~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 68 KGDVQCGICVESYD--------------G--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred CccccCCcccCCCc--------------c--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCC
Confidence 45678999998875 1 344679999999999999886542111 3455 57776664
No 150
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=20.52 E-value=49 Score=26.60 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=11.0
Q ss_pred CCCCcccccCccc
Q 015228 289 DPSCPICLRLQEE 301 (411)
Q Consensus 289 dptCPLCR~~~~~ 301 (411)
.|.||||......
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 3899999999864
No 151
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=62 Score=36.53 Aligned_cols=50 Identities=30% Similarity=0.585 Sum_probs=36.2
Q ss_pred cccccccchhccCCCccccccccCCCCCceeecCCC-HhhHHHHHhhccCCC--CCCCCCcccccCcccC
Q 015228 236 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRH-VFHAECLEQTTPKTQ--KSDPSCPICLRLQEEN 302 (411)
Q Consensus 236 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGH-VFHaeCLeqWL~k~~--~~dptCPLCR~~~~~~ 302 (411)
.|+||-.-+. .++.-.||| .--+.|.-+.....+ +....||+|+..++.+
T Consensus 2 ~c~ic~~s~~-----------------~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPD-----------------FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCcc-----------------ccccccccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 5999976654 455668999 899999877754332 2246789999988754
Done!