Query 015229
Match_columns 411
No_of_seqs 132 out of 430
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 1.2E-97 3E-102 749.9 33.3 365 5-407 1-374 (374)
2 KOG2777 tRNA-specific adenosin 100.0 1.7E-88 3.8E-93 694.6 26.3 363 4-409 172-542 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 1.1E-85 2.4E-90 660.7 14.9 335 51-402 1-343 (343)
4 COG0590 CumB Cytosine/adenosin 78.6 5.4 0.00012 35.7 5.9 34 46-88 38-71 (152)
5 cd01285 nucleoside_deaminase N 48.1 13 0.00029 30.9 2.1 16 131-146 68-83 (109)
6 PRK10860 tRNA-specific adenosi 47.0 18 0.0004 33.1 3.0 15 131-145 83-97 (172)
7 PF15134 DUF4570: Domain of un 32.4 26 0.00056 29.7 1.4 23 70-95 10-32 (109)
8 PF14737 DUF4470: Domain of un 19.9 76 0.0017 26.0 2.0 45 45-89 23-76 (100)
9 PF14216 DUF4326: Domain of un 16.7 60 0.0013 26.3 0.7 8 74-81 78-85 (86)
10 PF02173 pKID: pKID domain; I 14.4 1E+02 0.0023 21.5 1.3 20 75-94 12-31 (41)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=1.2e-97 Score=749.87 Aligned_cols=365 Identities=40% Similarity=0.617 Sum_probs=289.1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEecCCCccCCCccCCCCCcccchHHHHHHHHH
Q 015229 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (411)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~~~-~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (411)
.|||+||++|+++|++||++|||..+||||||||||+++. ++++||||||||||+|+++++.+|.+|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 4799999999999999999999999999999999999873 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeCCC-CceEeeCCcEEEEEeccCCCCccccccCcCCCCCccccCCCC
Q 015229 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGNS 162 (411)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~Lk~~v~~hLYiS~~PCGDAsi~~~~~~~~~~~~~~~~~ 162 (411)
|+||||+||+.+.++ . .+.||+..++ ++|+||+||+||||||++|||||||+.+.....+.. ..
T Consensus 81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~----~~ 145 (374)
T smart00552 81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDD----SK 145 (374)
T ss_pred HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccc----cc
Confidence 999999999987532 1 3457776554 499999999999999999999999997654322210 00
Q ss_pred CCCccc-cCCcccceeeccCCCCCCCccccceeecCCCCC--CccceechhhHHHHHHHhhhhhhHhhhccccceeceEE
Q 015229 163 LSSVDE-LNGFKDGICEASNLNNDDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSIT 239 (411)
Q Consensus 163 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~vRtKPGRg--d~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYl~siv 239 (411)
.+.... ..+...+.. ....+..+++..|+|||||||| ++|+||||||||||||||||||||||||||||||+|||
T Consensus 146 ~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssiv 223 (374)
T smart00552 146 HPVRKNIKRSKLRTKI--EIGEGTVPVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIV 223 (374)
T ss_pred cccccccccccccccc--cccCCcccccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEE
Confidence 000000 000000000 0112233577889999999998 57999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEEecCCCCcccccCccccCccCCcccEEeeCCCc-cee
Q 015229 240 VGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEV 318 (411)
Q Consensus 240 vg~~~~~~~~~~~~~~l~RAl~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~-~Ev 318 (411)
||.... .+++|+|||++|+.++ ..+|.||.+++|++...+ ..+|+. ...+.+ ..|++|+.++. .|+
T Consensus 224 vg~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~~--~~~~~~---~~~~s~-~~Sl~W~~~~~~~ev 290 (374)
T smart00552 224 LGKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLVS--VADFQR---QTAKSP-NFSVNWSQGDESLEI 290 (374)
T ss_pred ecCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeeccC--cccccc---cCCCCC-CCeEEEEeCCCcEEE
Confidence 996322 2579999999999877 578899999999976543 234421 111222 23899997654 899
Q ss_pred eeCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCCCcHHHHHhchHHHHHHHHHhhc---CCCCCC
Q 015229 319 ILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG---GPPFNN 395 (411)
Q Consensus 319 i~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~ak~~l~~---~~~~g~ 395 (411)
++|.+|++++ .++++|+|||++||++|.+|.......... ..||.|+|.++.+||++|+.|+. +.+||+
T Consensus 291 ~ng~~G~~~~-------~~~~~S~lcK~~l~~~f~~l~~~~~~~~~~-~~sY~e~K~~a~~Yq~aK~~l~~~l~~~~~g~ 362 (374)
T smart00552 291 LNGLTGKTQK-------SLGSPSRLCKKALFRLFQKLCSKLKRDDLL-HISYAEAKEAASEYQEAKQLLFEALNKAGLGS 362 (374)
T ss_pred EECcCCeECC-------CCCCccHHHHHHHHHHHHHHHHhhcccccC-cCCHHHHHHhHHHHHHHHHHHHHHHhHhhCCC
Confidence 9999998873 256789999999999999998776544332 38999999999999999965543 347999
Q ss_pred CCcCCCCCCCcc
Q 015229 396 WPLKPLGYEVFF 407 (411)
Q Consensus 396 W~~kp~~~~~F~ 407 (411)
|++||+++++|+
T Consensus 363 W~~KP~e~~~F~ 374 (374)
T smart00552 363 WIKKPPEQDQFK 374 (374)
T ss_pred cccCCCchhccC
Confidence 999999999995
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-88 Score=694.59 Aligned_cols=363 Identities=38% Similarity=0.575 Sum_probs=290.3
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEee-CCCCeEEEEEecCCCccCCCccCCCCCcccchHHHHHHHH
Q 015229 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARR 82 (411)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~-~~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR 82 (411)
..++|+||++|+++|++|+++|+|..+|||||||||+.. ...+.+||||||||||++++.|+.+|.+||||||||||||
T Consensus 172 ~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR 251 (542)
T KOG2777|consen 172 STLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARR 251 (542)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHH
Confidence 368999999999999999999999999999999999987 3567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeCCC-CceEeeCCcEEEEEeccCCCCccccccCcCCCCCccccCCC
Q 015229 83 ALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGN 161 (411)
Q Consensus 83 ~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~Lk~~v~~hLYiS~~PCGDAsi~~~~~~~~~~~~~~~~ 161 (411)
||+||||+||+.+... ..+.||+..++ ++|+||+||.||||||++|||||+++.......+.
T Consensus 252 ~llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~------ 314 (542)
T KOG2777|consen 252 GLLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKK------ 314 (542)
T ss_pred HHHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCcccccccc------
Confidence 9999999999998542 13457775554 46999999999999999999999998654321110
Q ss_pred CCCCccccCCcccceeeccCCCCCCCccccceeecCCCC--CCccceechhhHHHHHHHhhhhhhHhhhccccceeceEE
Q 015229 162 SLSSVDELNGFKDGICEASNLNNDDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSIT 239 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vRtKPGR--gd~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYl~siv 239 (411)
.+.......+.-++.. ....++..+...++||||||| |++++||||||||+|||||||||||||||++||||+|||
T Consensus 315 ~~~~~~~~~~~~~~~~--~~g~g~~~~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIv 392 (542)
T KOG2777|consen 315 LKHVNSTRRGQLRTKI--ESGEGTIPVGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIV 392 (542)
T ss_pred CCCCCchhhhccchhh--hccccccccCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeE
Confidence 0000001111111111 112334467778999999999 999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEEecCCCCcccccCccccCccCCcccEEeeCCC-ccee
Q 015229 240 VGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEV 318 (411)
Q Consensus 240 vg~~~~~~~~~~~~~~l~RAl~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Ev 318 (411)
||...++ .++|.|||+.|+......+|.||.+|.|.+...+ +.+ + ++...+++|+||+.+. ..||
T Consensus 393 lg~~~~~------~~~L~rAi~~R~~~~~~~lp~~~~~n~p~~~~v~--~~~-r-----~~~~~~~~slnW~~~~~~~ev 458 (542)
T KOG2777|consen 393 LGKSLHS------PEHLSRAIHGRLSNFLGNLPPPYILNPPLLSRVS--DAE-R-----QPGKMTPFSLNWSLGDYDLEV 458 (542)
T ss_pred eccccCC------HHHHHHHHhcccccccCCCCCceeecCcccccCC--HhH-h-----ccccCCceeeeeecCCcceEe
Confidence 9964432 4699999999998833348899999998876643 222 1 2223344899999876 7888
Q ss_pred eeCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCCCcHHHHHhchHHHHHHHHHhhc---CCCCCC
Q 015229 319 ILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG---GPPFNN 395 (411)
Q Consensus 319 i~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~ak~~l~~---~~~~g~ 395 (411)
++..+|++-+ +.+|||||++||..|..+......... ...+|.++|..+++||.+|++|.. +.+||+
T Consensus 459 ~d~~~G~~~~---------~~~srlcK~~~~~~~~~l~~~~~~~~~-~~~~y~~ak~~~k~yq~ak~~l~~~Lk~~glG~ 528 (542)
T KOG2777|consen 459 NDVTTGRTSL---------GSASRLCKASLFEAFRKLHGLLPKLLL-LPLSYGEAKAEAKEYQSAKKQLKKALKQAGLGN 528 (542)
T ss_pred cccccCcccC---------CCccHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHhHHHHHHHHHHHHHHHHcccCc
Confidence 8888887432 247999999999999999888754433 456899999999999999887653 359999
Q ss_pred CCcCCCCCCCcccc
Q 015229 396 WPLKPLGYEVFFQG 409 (411)
Q Consensus 396 W~~kp~~~~~F~~~ 409 (411)
|++||+|+++|++.
T Consensus 529 Wi~KP~e~~~F~l~ 542 (542)
T KOG2777|consen 529 WIRKPPELDQFTLA 542 (542)
T ss_pred CccCChhhhccccC
Confidence 99999999999863
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=1.1e-85 Score=660.70 Aligned_cols=335 Identities=40% Similarity=0.649 Sum_probs=183.4
Q ss_pred EEecCCCccCCCccCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeC--CCCceEeeCC
Q 015229 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (411)
Q Consensus 51 slgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~g~~~Lk~~ 128 (411)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+..... .+ ....||+.. .+++|+||+|
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~------~~-~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGS------GD-KESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH-------H-HHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCC------cc-ccCceEeecCCCCceeEeCCC
Confidence 79999999999999999999999999999999999999999999864210 00 123466654 5679999999
Q ss_pred cEEEEEeccCCCCccccccCcCCCCCcccc-CCCCCCCcc-ccCCcccceeec---cCCCCCCCccccceeecCCCCCCc
Q 015229 129 WQLHLYISQLPCGDASLSSCHSAPRNFFSR-EGNSLSSVD-ELNGFKDGICEA---SNLNNDDSLQHIGRVQRKPGRGDT 203 (411)
Q Consensus 129 v~~hLYiS~~PCGDAsi~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~g~vRtKPGRgd~ 203 (411)
|+||||||++|||||||+.+...+.+.... +.+...... ...+. ....+ ....++..|+.+|++||||||||+
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~ 151 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKITGA--KTVPGEPSDPLRGRANYQQLGIVRTKPGRGDR 151 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEETSS--SEEE--SS----------HHHHH-----TT--
T ss_pred eEEEEEeccCccCccccccccccccccccccccccccccccccCCC--cccCCCccccccccccccCCceeeeeccccCC
Confidence 999999999999999999765421110000 000000000 00000 01111 113456789999999999999999
Q ss_pred cceechhhHHHHHHHhhhhhhHhhhccccceeceEEeCCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEE
Q 015229 204 TLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFL 283 (411)
Q Consensus 204 t~SmSCSDKLarWnvlGlQGaLLS~~iePIYl~sivvg~~~~~~~~~~~~~~l~RAl~~R~~~~~~~l~~~~~~~~p~~~ 283 (411)
+.|||||||||+||||||||||||||||||||++||||..+. + .+++|+|||++|+......+|.||+++.|++.
T Consensus 152 ~~smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~-~~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~ 226 (343)
T PF02137_consen 152 TPSMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----F-SQEALRRAFCGRLKSLSSRLPPPYRVNPPLIF 226 (343)
T ss_dssp -EEE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE
T ss_pred CcceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----C-CHHHHHhhhhcccccccccCCCCceecCccee
Confidence 999999999999999999999999999999999999997642 1 24799999999995555677899999999887
Q ss_pred ecCCCCcccccCccccCccCCcccEEeeCCCcceeeeCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcc
Q 015229 284 AASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRC 363 (411)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~~Evi~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~ 363 (411)
..... .............++++||+|+..+..|+++ +|+++|.++|+...++++|+|||++||+.|.+|...+....
T Consensus 227 ~~~~~-~~~~~~~~~~~~~~s~~Si~W~~~~~~~i~~--~g~k~G~~~k~~~~~~~~S~lck~~l~~~f~~l~~~~~~~~ 303 (343)
T PF02137_consen 227 FSSSR-FSDSSASSSEKAKPSNLSINWCASGEEEIEV--NGVKQGRSKKKSPSPKAASRLCKAALFELFLQLLKALNRSD 303 (343)
T ss_dssp -------E-SS------S---SEEEEEET-T-SS-EE--EETTTTE-----ETTS---TTSHHHHHHHHHHHHCCS-SS-
T ss_pred ecccc-cccccccccCCCCCCCceEEEEecCCcEEEE--eCCCCCcccccCCCCCccCcccHHHHHHHHHHHHHhhcccc
Confidence 43210 0122233345567889999999855667776 99999999888888999999999999999999987766555
Q ss_pred cCCCCcHHHHHhchHHHHHHHHHhhcC-CCCCCCCcCCCC
Q 015229 364 LAADISYRELKDGAQAYNIASKVFKGG-PPFNNWPLKPLG 402 (411)
Q Consensus 364 ~~~~~tY~e~K~~a~~Yq~ak~~l~~~-~~~g~W~~kp~~ 402 (411)
+....||+++|.++.+||++|+.|+.. .+|++|++||+|
T Consensus 304 ~~~~~tY~~~K~~a~~Y~~ak~~l~~~~~~~~~W~~k~~e 343 (343)
T PF02137_consen 304 LKSSKTYYEAKRAASDYQEAKQQLKSAQQGLGGWIRKPPE 343 (343)
T ss_dssp -SS--SHHHHHHT-HHHHHHHHHHHHHHTTS-------GG
T ss_pred CCCcccHHHHHHCHHHHHHHHHHHHhhhccCCCCCCCCCC
Confidence 556679999999999999999999875 789999999976
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=78.56 E-value=5.4 Score=35.71 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCccCCCccCCCCCcccchHHHHHHHHHHHHHH
Q 015229 46 DLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (411)
Q Consensus 46 ~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~f~r~L 88 (411)
+-++|+-|-++..-..+-.. ||||+|.|.+-+-|
T Consensus 38 ~~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~~ 71 (152)
T COG0590 38 DGEIIARGHNRREEDNDPTA---------HAEILAIRAAAETL 71 (152)
T ss_pred CCCEEEEecCccccCCCccc---------cHHHHHHHHHHHhh
Confidence 44677777666655443222 99999999885444
No 5
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=48.06 E-value=13 Score=30.92 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.1
Q ss_pred EEEEeccCCCCccccc
Q 015229 131 LHLYISQLPCGDASLS 146 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi~ 146 (411)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 6789999999877663
No 6
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=46.96 E-value=18 Score=33.06 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 015229 131 LHLYISQLPCGDASL 145 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi 145 (411)
.-||+|-.||--++.
T Consensus 83 ~tlY~TlEPC~MC~~ 97 (172)
T PRK10860 83 ATLYVTLEPCVMCAG 97 (172)
T ss_pred cEEEeeCCCcHHHHH
Confidence 468999999975443
No 7
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=32.42 E-value=26 Score=29.71 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhh
Q 015229 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (411)
Q Consensus 70 ~lhD~HAEVLARR~f~r~Ly~el~~~ 95 (411)
-|++-|.|||++|.+ |+++++..
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 378899999999987 66666654
No 8
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=19.95 E-value=76 Score=25.95 Aligned_cols=45 Identities=31% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCeEEEEEecCC-----CccCCCccCC----CCCcccchHHHHHHHHHHHHHHH
Q 015229 45 KDLEVVALGTGT-----KCIGRSLLSP----HGDIVNDSHAEIVARRALLRFFY 89 (411)
Q Consensus 45 ~~~~vvslgTG~-----Kc~~~~~l~~----~G~~lhD~HAEVLARR~f~r~Ly 89 (411)
+++.++=+|.|. +.+-...... ---.|+|.++||+||--++-.++
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL~ll 76 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLLQLL 76 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHHHHH
Confidence 356677777774 2221111112 23489999999999998877764
No 9
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=16.65 E-value=60 Score=26.26 Aligned_cols=8 Identities=25% Similarity=0.708 Sum_probs=7.2
Q ss_pred hHHHHHHH
Q 015229 74 SHAEIVAR 81 (411)
Q Consensus 74 ~HAEVLAR 81 (411)
|||+||+.
T Consensus 78 CHgDVL~e 85 (86)
T PF14216_consen 78 CHGDVLAE 85 (86)
T ss_pred CchHHHhh
Confidence 99999984
No 10
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=14.44 E-value=1e+02 Score=21.50 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 015229 75 HAEIVARRALLRFFYTEVLN 94 (411)
Q Consensus 75 HAEVLARR~f~r~Ly~el~~ 94 (411)
|-|||+||-=-|=++++|-.
T Consensus 12 rReiLsRRPSYRKIlndLs~ 31 (41)
T PF02173_consen 12 RREILSRRPSYRKILNDLSS 31 (41)
T ss_dssp HHHHHTTSTHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHhcc
Confidence 57999999998988888843
Done!