Query 015229
Match_columns 411
No_of_seqs 132 out of 430
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 2.3E-93 8E-98 723.5 28.2 365 4-409 23-402 (403)
2 2b3j_A TRNA adenosine deaminas 56.5 5.1 0.00017 34.7 2.2 16 131-146 77-92 (159)
3 1wwr_A TRNA adenosine deaminas 55.9 5.4 0.00018 35.1 2.3 16 131-146 93-108 (171)
4 2a8n_A Cytidine and deoxycytid 55.3 4.1 0.00014 34.7 1.4 16 131-146 74-89 (144)
5 2nx8_A TRNA-specific adenosine 53.2 6 0.00021 35.1 2.2 15 131-145 86-100 (179)
6 1z3a_A TRNA-specific adenosine 53.0 5.1 0.00017 35.1 1.6 15 131-145 79-93 (168)
7 1wkq_A Guanine deaminase; doma 52.7 6.1 0.00021 34.6 2.1 15 131-145 82-96 (164)
8 2g84_A Cytidine and deoxycytid 43.5 13 0.00045 33.3 2.8 15 131-145 105-119 (197)
9 3v4k_A DNA DC->DU-editing enzy 31.8 9.3 0.00032 34.7 -0.1 17 129-145 100-116 (203)
10 2nyt_A Probable C->U-editing e 31.2 24 0.00083 31.5 2.5 13 73-85 62-74 (190)
11 3dh1_A TRNA-specific adenosine 30.5 18 0.00061 32.3 1.5 15 74-88 74-88 (189)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-93 Score=723.46 Aligned_cols=365 Identities=33% Similarity=0.519 Sum_probs=284.8
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEecCCCccCCCccCCCCCcccchHHHHHHH
Q 015229 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (411)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~~--~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLAR 81 (411)
..|||+||++|+++|++|+++|||..+|||||||||++.+ .++++||||||||||++++.++.+|.+|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 3689999999999999999999999999999999999975 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcccccCCCCCeeeeeCCCCceEeeCCcEEEEEeccCCCCccccccCcCCCCCccccCCC
Q 015229 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSREGN 161 (411)
Q Consensus 82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~Lk~~v~~hLYiS~~PCGDAsi~~~~~~~~~~~~~~~~ 161 (411)
|||+||||+||+.+.... ++. ..+||+..++|+|+||+||+||||||++|||||||+.+.+..... .++
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~---~~~ 171 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEE---PAD 171 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCcccccccc---ccc
Confidence 999999999998875210 011 245788888889999999999999999999999998654321110 001
Q ss_pred CCCCccccCCcccceee-c--cCCCCCCCccccceeecCCC--CCCccceechhhHHHHHHHhhhhhhHhhhccccceec
Q 015229 162 SLSSVDELNGFKDGICE-A--SNLNNDDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLS 236 (411)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~g~vRtKPG--Rgd~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYl~ 236 (411)
..+. ....+..++.+. + ..+... .+.++|+|| ||++|+||||||||||||||||||||||||+|||||+
T Consensus 172 ~~~~-~~~~g~lr~k~~~g~g~~p~~~-----~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYls 245 (403)
T 1zy7_A 172 RHPN-RKARGQLRTKIESGEGTIPVRS-----NASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFS 245 (403)
T ss_dssp ------CCTTCCEEEETTCSSCEECCS-----SCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEE
T ss_pred cCcc-hhhccccceeeccCCCCCCCCC-----cccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeE
Confidence 1110 011111111111 0 001111 134678888 8999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEEecCCCCcccccCccccCccCCcccEEeeCC-Cc
Q 015229 237 SITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKS-GL 315 (411)
Q Consensus 237 sivvg~~~~~~~~~~~~~~l~RAl~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~-~~ 315 (411)
+||||.+++ .++|+|||++|+..+ ..+|.||++++|++...+.. +.+ .+..++++||+|+.+ ..
T Consensus 246 siv~g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r-----~~~~~~~~Si~W~~~~~~ 310 (403)
T 1zy7_A 246 SIILGSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EAR-----QPGKAPNFSVNWTVGDSA 310 (403)
T ss_dssp EEEESSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCC-----CCSCCCSEEEEEETTCSS
T ss_pred EEEeCCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--ccc-----cCCCCCCeeEEEEcCCCc
Confidence 999998753 478999999999875 45789999999998764332 221 122456789999975 45
Q ss_pred ceeeeCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhc----ccCCCCcHHHHHhchHHHHHHHHHhhc--
Q 015229 316 HEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIR----CLAADISYRELKDGAQAYNIASKVFKG-- 389 (411)
Q Consensus 316 ~Evi~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~----~~~~~~tY~e~K~~a~~Yq~ak~~l~~-- 389 (411)
.|||+|.+|++. ++++|+|||++||++|.+|...+... ......||.|+|.++.+||++|++|+.
T Consensus 311 ~Evi~g~tGk~~---------~~~~SrlcK~~l~~~f~~l~~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~ak~~l~~~~ 381 (403)
T 1zy7_A 311 IEVINATTGKDE---------LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAF 381 (403)
T ss_dssp CEEEETTTTEET---------TSCCCTTSHHHHHHHHHHHHTTSCGGGCSSCCSSCCSHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCC---------cCCcCHHHHHHHHHHHHHHHHHhccccccccCCCccCHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999998732 24589999999999999998875432 134678999999999999999998753
Q ss_pred -CCCCCCCCcCCCCCCCcccc
Q 015229 390 -GPPFNNWPLKPLGYEVFFQG 409 (411)
Q Consensus 390 -~~~~g~W~~kp~~~~~F~~~ 409 (411)
+.+||+|++||+++|+|++.
T Consensus 382 ~~~~lg~W~~Kp~e~d~F~l~ 402 (403)
T 1zy7_A 382 IKAGLGAWVEKPTEQDQFSLT 402 (403)
T ss_dssp HHTTSCCCCCCCGGGGCCCCC
T ss_pred HhccCCCCCcCCcccCceEec
Confidence 35899999999999999985
No 2
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=56.50 E-value=5.1 Score=34.74 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.7
Q ss_pred EEEEeccCCCCccccc
Q 015229 131 LHLYISQLPCGDASLS 146 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi~ 146 (411)
.-||+|..||+-++.-
T Consensus 77 ~tlyvT~EPC~mC~~a 92 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGT 92 (159)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 4689999999877653
No 3
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=55.91 E-value=5.4 Score=35.14 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=12.8
Q ss_pred EEEEeccCCCCccccc
Q 015229 131 LHLYISQLPCGDASLS 146 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi~ 146 (411)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999877653
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=55.31 E-value=4.1 Score=34.67 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.6
Q ss_pred EEEEeccCCCCccccc
Q 015229 131 LHLYISQLPCGDASLS 146 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi~ 146 (411)
.-||+|..||+-++.-
T Consensus 74 ~tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAA 89 (144)
T ss_dssp CEEEEEECCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 3679999999877653
No 5
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=53.22 E-value=6 Score=35.09 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.1
Q ss_pred EEEEeccCCCCcccc
Q 015229 131 LHLYISQLPCGDASL 145 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi 145 (411)
.-||+|-.||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 468999999976654
No 6
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=52.99 E-value=5.1 Score=35.14 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcccc
Q 015229 131 LHLYISQLPCGDASL 145 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi 145 (411)
.-||+|..||+-++.
T Consensus 79 ~tlYvTlEPC~mC~~ 93 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAG 93 (168)
T ss_dssp CEEEEEECCCHHHHH
T ss_pred cEEEEcCCCcHHHHH
Confidence 368999999987665
No 7
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=52.68 E-value=6.1 Score=34.56 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcccc
Q 015229 131 LHLYISQLPCGDASL 145 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi 145 (411)
.-||+|..||+-++.
T Consensus 82 ~tlYvT~EPC~mCa~ 96 (164)
T 1wkq_A 82 CILYTSCEPCPMCLG 96 (164)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEEeCCChHHHHH
Confidence 468999999976654
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=43.55 E-value=13 Score=33.33 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.5
Q ss_pred EEEEeccCCCCcccc
Q 015229 131 LHLYISQLPCGDASL 145 (411)
Q Consensus 131 ~hLYiS~~PCGDAsi 145 (411)
.-||+|..||--+..
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 568999999975443
No 9
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=31.77 E-value=9.3 Score=34.66 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.0
Q ss_pred cEEEEEeccCCCCcccc
Q 015229 129 WQLHLYISQLPCGDASL 145 (411)
Q Consensus 129 v~~hLYiS~~PCGDAsi 145 (411)
+++..|+|-+||-+++-
T Consensus 100 Y~vTwy~SWSPC~~CA~ 116 (203)
T 3v4k_A 100 YRVTCFTSWSPCFSCAQ 116 (203)
T ss_pred EEEEEEEeCCChHHHHH
Confidence 67899999999999765
No 10
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=31.22 E-value=24 Score=31.50 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=10.6
Q ss_pred chHHHHHHHHHHH
Q 015229 73 DSHAEIVARRALL 85 (411)
Q Consensus 73 D~HAEVLARR~f~ 85 (411)
-.||||.|.|-+.
T Consensus 62 ~~HAE~~Ai~~a~ 74 (190)
T 2nyt_A 62 AAHAEEAFFNTIL 74 (190)
T ss_pred CcCHHHHHHHHHH
Confidence 3899999988763
No 11
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=30.53 E-value=18 Score=32.30 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 015229 74 SHAEIVARRALLRFF 88 (411)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (411)
.||||+|.|...+.+
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 599999999887665
Done!