BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015230
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 610 bits (1572), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/411 (70%), Positives = 337/411 (81%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 22 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 81
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL RA+TGR++
Sbjct: 82 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK 141
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 142 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 201
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+AYGG QE F
Sbjct: 202 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF 261
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 262 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 321
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 322 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 381
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 382 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 432
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/411 (70%), Positives = 337/411 (81%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 22 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 81
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+ RA+TGR++
Sbjct: 82 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK 141
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 142 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 201
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+AYGG QE F
Sbjct: 202 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF 261
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 262 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 321
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 322 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 381
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 382 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 432
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/411 (70%), Positives = 337/411 (81%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+ RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF 256
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/411 (70%), Positives = 337/411 (81%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKF 256
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 607 bits (1565), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/411 (71%), Positives = 343/411 (83%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VKG+H+WD+DGN+YIDYVGSWGPAI+GHA +V+ A
Sbjct: 1 MPGGVSSPVRAFKSVGGQPIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDA 60
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ++KGTSFGAPCLLEN+LAEMVI+AVPS+EMVRFVNSGTEACM VLRL RA+T RE+
Sbjct: 61 LHAALEKGTSFGAPCLLENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQREK 120
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
+IKFEGCYHGHAD FLVKAGSGVATLGLPDSPGVPK T TLTAP+ND+ A+ LFE
Sbjct: 121 VIKFEGCYHGHADMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEAVSRLFEQY 180
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IA +ILEPVVGN+GFI P FL +R +TK+ GALL+FDEVMTGFR+AYGGAQE F
Sbjct: 181 PNDIAGVILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGFRIAYGGAQEKF 240
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGGR +IM+MVAPAGP+YQAGTLSGNPLAMTAGI TL+
Sbjct: 241 GVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEI 300
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L PG+YE+L++ITG+L QG++DA ++ GH +CGG+ISGMFG FFT GPV N+E AK+S+
Sbjct: 301 LSRPGSYEHLDRITGKLVQGLLDAAREFGHEVCGGHISGMFGLFFTAGPVTNYEQAKQSD 360
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KFA F+RGMLE+G+Y APSQFEAGFTSLAH+ DI+ TI AA VL Q+
Sbjct: 361 LKKFAAFHRGMLEQGIYLAPSQFEAGFTSLAHTEADIERTIAAARTVLSQL 411
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 606 bits (1563), Expect = e-174, Method: Compositional matrix adjust.
Identities = 287/411 (69%), Positives = 337/411 (81%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+ RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKF 256
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/411 (56%), Positives = 291/411 (70%), Gaps = 1/411 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSV PI + KGS ++DIDGNEYIDYV SWGP I+GH +D+V+ +
Sbjct: 26 MPGGVNSPVRAFKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVES 85
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L + + GTSFGAP +EN LA++VI VPS+E+VR V+SGTEA M LRLAR +TGR +
Sbjct: 86 LKKVAEYGTSFGAPTEVENELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRNK 145
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KFEGCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T P+ND+ +++ F+
Sbjct: 146 ILKFEGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLESVKLAFQQF 205
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IA +I+EPV GN G + P+ FL +R IT++ G+LLIFDEVMTGFR+ Y AQ YF
Sbjct: 206 GEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGFRVDYNCAQGYF 265
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD PVGAYGG+ +IME +AP+GP+YQAGTLSGNPLAMTAG+ TLK+
Sbjct: 266 GVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLKQ 325
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L P +Y+ K L +GI A + G M GFFFT PV N+E AK S+
Sbjct: 326 LT-PDSYKNFIKKGDRLEEGISKAAEAHGIPHTFNRAGSMIGFFFTNEPVINYETAKASD 384
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
FA +Y+GM EGV+ PSQFE F S AH+ +DI++TI AAEKV +I
Sbjct: 385 LKLFASYYKGMANEGVFLPPSQFEGLFLSTAHTDEDIENTIQAAEKVFAEI 435
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/395 (54%), Positives = 266/395 (67%), Gaps = 1/395 (0%)
Query: 2 PGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 61
PGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ AL
Sbjct: 19 PGGVNSPVRAFKSVGXNPLFXERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEAL 78
Query: 62 GETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 121
++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA LRLAR +TGR +I
Sbjct: 79 KAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRXVNSGTEATXSALRLARGYTGRNKI 138
Query: 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181
+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++ FE
Sbjct: 139 LKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG 198
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG 241
+IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEV TGFR+AY Q Y+G
Sbjct: 199 DDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGFRVAYNCGQGYYG 258
Query: 242 VTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301
VTPD PVGAYGG+ +I VAP+GP+YQAGTLSGNPLA AG TL +L
Sbjct: 259 VTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQL 318
Query: 302 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 361
P +Y + L G+ A +K G G FFT+ PV N++ AK S
Sbjct: 319 T-PESYVEFERKAEXLEAGLRKAAEKHGIPHHINRAGSXIGIFFTDEPVINYDAAKSSNL 377
Query: 362 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDD 396
FA +YR +E+GV+ PSQFE F S HS D
Sbjct: 378 QFFAAYYREXVEQGVFLPPSQFEGLFLSTVHSDAD 412
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/409 (52%), Positives = 270/409 (66%), Gaps = 2/409 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP I+GHA +VLA
Sbjct: 17 IPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLAR 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M LRLAR +TGR
Sbjct: 77 VRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPY 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +ND L + +
Sbjct: 137 IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRR 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMTGFRLA+GGA E
Sbjct: 197 GEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGATELL 255
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+ PD P AY GRR+IME VAP GP+YQAGTLSGNPLAM AG+ TL+
Sbjct: 256 GLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLEL 315
Query: 301 LKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L+E PG Y YL + L G+ + K+ G + M FFTEGPV F+DA+++
Sbjct: 316 LEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRT 375
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 408
+T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K L
Sbjct: 376 DTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRKAL 424
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/412 (49%), Positives = 267/412 (64%), Gaps = 1/412 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWGP I+GH + A
Sbjct: 18 IPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E +++G SFGAP E A++V VP+ + VR VNSGTEA +RLAR +TGR++
Sbjct: 78 VIEAVERGLSFGAPTEXEVKXAQLVTDLVPTXDXVRXVNSGTEATXSAIRLARGYTGRDK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +ND++++ FE
Sbjct: 138 IIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
E+A II+EPV GN I P P+FL +R + E GALLI DEV TGFR+A GAQ+Y+
Sbjct: 198 PQEVACIIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGFRVALAGAQDYY 257
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
V PD PVGA+GGRR++ +AP GP+YQAGTLSGNP+A AG L
Sbjct: 258 HVIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTE 317
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKS 359
+ + G YE L ++T L G+ A K+ + ++ G FG FFT V ++D
Sbjct: 318 ISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGXFGLFFTNADTVTCYQDVXNC 377
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ +F RF+ LEEGVY APS FEAGF SLAHS++DIQ T+ AA + ++
Sbjct: 378 DVERFKRFFHLXLEEGVYLAPSAFEAGFXSLAHSNEDIQKTVNAARRCFAKL 429
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/402 (45%), Positives = 259/402 (64%), Gaps = 1/402 (0%)
Query: 3 GGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 61
GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++GP I GHA + A+
Sbjct: 21 GGVNSPSRSFKAVGGGAPIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAI 80
Query: 62 GETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 121
+ G +G P LE A+ + A P+++ VRFVNSGTEA +R+ARA+TGR +I
Sbjct: 81 TTAAENGVLYGTPTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXTTIRVARAYTGRTKI 140
Query: 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181
KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T PFN+V L+ +
Sbjct: 141 XKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWG 200
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG 241
E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV+T FR YGGAQ+ G
Sbjct: 201 HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFXYGGAQDLLG 260
Query: 242 VTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301
VTPD P+GAYGG+++I E VAP GP YQAGT +GNP + +GI L+ L
Sbjct: 261 VTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVL 320
Query: 302 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 361
++ G YE L+++ L +GI++ K I + G +FT + +++ A+ ++
Sbjct: 321 QQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDG 380
Query: 362 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 403
F +F++ L+EGV APS++EA F + H+ +DI++TI A
Sbjct: 381 EXFGKFFKLXLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEA 422
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 304 bits (778), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 162/410 (39%), Positives = 234/410 (57%), Gaps = 2/410 (0%)
Query: 2 PGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL 61
PGGVNSPVRA +V P +G++++ +DG +D V ++GP I+GH +VL A+
Sbjct: 24 PGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAV 81
Query: 62 GETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 121
E + +G +GAP E +LAE ++ V M+RFVNSGTEA M +RLAR +TGR+ I
Sbjct: 82 EEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLI 141
Query: 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181
+KF+GCYHG D LV AGS A G+P S GVP+ TL P+NDV ALE +F
Sbjct: 142 LKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYG 201
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG 241
IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV+TGFRL GAQ YF
Sbjct: 202 DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYFN 261
Query: 242 VTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301
+ D PVGA G R++M ++ P G ++ AGT + +P+ M AG+ TLK L
Sbjct: 262 IEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL 321
Query: 302 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSET 361
+E Y + L + + + G + M F V N A+K++
Sbjct: 322 EEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADK 381
Query: 362 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ + + ML GV+ APS EA FT L H + ++ + L+ +
Sbjct: 382 KFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKTV 431
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 180/387 (46%), Gaps = 20/387 (5%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ +G+ +WD DG+ Y D++ + + GH+ ++ A+ E M+ G + LLE
Sbjct: 70 PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLE 129
Query: 79 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 138
LA ++ P IE +RF NSGTEA + L A FTGR +I+ F G YHG
Sbjct: 130 GRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHG-------- 181
Query: 139 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198
LG P P ++ L P+ND E + EIA +++EP+ G SG
Sbjct: 182 -----GVLGFGARPS-PTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGC 235
Query: 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDXXXXXXXXXXXXP 258
I +PDFL A+R + GALL+FDEVMT RLA G G+ D
Sbjct: 236 IPGQPDFLQALRESATQVGALLVFDEVMTS-RLAPHGLANKLGIRSDLTTLGKYIGGGMS 294
Query: 259 VGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL 317
GA+GGR D+M + P GP+ +GT + N + M AG L +L P L + GE
Sbjct: 295 FGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAE-RGEA 353
Query: 318 TQGIIDA-GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV 376
+ ++A G A+ I + F +G V + ED + + +L E +
Sbjct: 354 LRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDI 413
Query: 377 YFAPSQFEAGFTSLAHSSDDIQHTITA 403
Y +P F SL + DI + A
Sbjct: 414 YSSPRGFVV--LSLPLTDADIDRYVAA 438
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 183/384 (47%), Gaps = 24/384 (6%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGG + + P+V GS D+DG+ Y++++G + + GH+ + AA
Sbjct: 68 MPGGNTRSILFHRPF---PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAA 124
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ + G + E + AE V PSI++VRF NSGTEA + L A A TGR+
Sbjct: 125 VERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKT 184
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
++ F+G YHG L+ SG A P A Y + +NDV +L + +
Sbjct: 185 VLAFDGGYHGG----LLNFASGHA----------PTNAPYHVVLGVYNDVEGTADLLKRH 230
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+ AAI++EP++G G + + FL+ +R GALLIFDEVMT RL+ GGAQE
Sbjct: 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQEML 289
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTL 298
G++ D GA+GGRRD+ME PA G AGT + N L M+AG L
Sbjct: 290 GISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAAL 349
Query: 299 KRLKEPGTYEYLNKITGELTQGI--IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 356
++ L+ + I +A G + + F+ P+ + D
Sbjct: 350 TQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTG--LGSLGTIHFSRAPIRSAGDV 407
Query: 357 KKSETTKFARFYRGMLEEGVYFAP 380
+ ++ F+ ML +G+Y AP
Sbjct: 408 RAADQQLKELFFFHMLRKGIYLAP 431
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 131/423 (30%), Positives = 196/423 (46%), Gaps = 24/423 (5%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MP GV + RAF G + +G H D+DGN Y+D+ G G ++GH +V AA
Sbjct: 25 MPDGVTADTRAFDPHG---LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAA 81
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E + G + A LE AE +++A PSI +RF SGTE + LR+ARAFTGR
Sbjct: 82 IAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRM 141
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I++FEG YHG D +G G P +PGV T TL +D+ + +F N+
Sbjct: 142 ILRFEGHYHGWHD--FSASGYNSHFDGQP-APGVLPETTANTLLIRPDDIEGMREVFANH 198
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IAA I EPV + G FL + ++ GAL I DEV++GFR+ G Q
Sbjct: 199 GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALL 258
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTL 298
V PD P G GGR D+M +++ + GT +GNP+ A I +
Sbjct: 259 DVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDA--GKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 356
+ E +N + G+ + ++ +K + + G S GF G N D
Sbjct: 319 DTILEDDVCAKINDL-GQFAREAMNHLFARKGLNWLAYGRFS---GFHLMPGLPPNTTDT 374
Query: 357 KKSETTKFAR--------FYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 408
+ AR ++ EGV + F S H + ++H +T ++VL
Sbjct: 375 GSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHEREHVEHLVTTFDRVL 432
Query: 409 RQI 411
++
Sbjct: 433 DRL 435
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 153/327 (46%), Gaps = 25/327 (7%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL- 76
PI D + +WD++G EY+D+ G GH +V+AA+ +KK + L
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 82
Query: 77 ----LENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130
LE L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 83 YEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHG 140
Query: 131 HADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG- 182
L G + G+ PG A Y P + +S ++ +F+N+
Sbjct: 141 RTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAP 197
Query: 183 -EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
+IAAI++EPV G+ GF A P F+ +R + E+G +LI DEV +G R A E
Sbjct: 198 EDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 257
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PD P+ GR ++M+ VAP G GT +GNP+A A + LK
Sbjct: 258 GVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKV 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKK 327
++ + N + +L G++ +K
Sbjct: 315 FEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 162/359 (45%), Gaps = 29/359 (8%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL- 76
PI D + +WD++G EY+D+ G GH +V+AA+ +KK + L
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 82
Query: 77 ----LENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130
LE L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 83 YEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHG 140
Query: 131 HADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG- 182
L G + G+ PG A Y P + +S ++ +F+N+
Sbjct: 141 RTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAP 197
Query: 183 -EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
+IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G R A E
Sbjct: 198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 257
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PD P+ GR ++M+ VAP G GT +GNP+A A + LK
Sbjct: 258 GVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKV 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAK 357
++ + N + +L G++ +K H G + M E +N DAK
Sbjct: 315 FEQENLLQKANDLGQKLKDGLLAIAEK--HPEIGDVRGLGAMIAIELFEDGDHNKPDAK 371
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 152/327 (46%), Gaps = 25/327 (7%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL- 76
PI D + +WD++G EY+D+ G GH +V+AA+ +KK + L
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 82
Query: 77 ----LENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130
LE L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 83 YEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHG 140
Query: 131 HADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG- 182
L G + G+ PG A Y P + +S ++ +F+N+
Sbjct: 141 RTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAP 197
Query: 183 -EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
+IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G R A E
Sbjct: 198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 257
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PD P+ GR ++M+ VAP G GT +GNP+A A + LK
Sbjct: 258 GVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKV 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKK 327
++ + N + +L G++ +K
Sbjct: 315 FEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 151/327 (46%), Gaps = 25/327 (7%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL- 76
PI D + +WD++G EY+D+ G GH +V+AA+ +KK + L
Sbjct: 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 82
Query: 77 ----LENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130
LE L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 83 YEPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHG 140
Query: 131 HADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVS------ALENLFENNKG- 182
L G + G+ PG A Y P + +S ++ +F+N+
Sbjct: 141 RTHYTLALTGKVNPYSAGMGLMPGHVYRALY---PCPLHGISEDDAIASIHRIFKNDAAP 197
Query: 183 -EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
+IAAI++EPV G GF A P F+ +R + E+G +LI DE +G R A E
Sbjct: 198 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQM 257
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GV PD P+ GR ++M+ VAP G GT +GNP+A A + LK
Sbjct: 258 GVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKV 314
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKK 327
++ + N + +L G++ +K
Sbjct: 315 FEQENLLQKANDLGQKLKDGLLAIAEK 341
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 141/291 (48%), Gaps = 25/291 (8%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLA--- 82
+G+ +WD +GNEYID VG +G A +GH + +V+ A+ + T P L +
Sbjct: 35 QGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAE--TLMAMPQTLPTPMRGEF 92
Query: 83 EMVISAV--PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG 140
++A+ P + V VNSGTEA L+ ARA TGR+ KF G F +
Sbjct: 93 YRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRK---KFVAAMRG----FSGRTM 145
Query: 141 SGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198
++ P P +P E + P+NDV AL+ + E AA+ILEPV G G
Sbjct: 146 GSLSVTWEPKYREPFLPLVEPVEFI--PYNDVEALKRAVDE---ETAAVILEPVQGEGGV 200
Query: 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXX 257
P+FL A R IT+E GALLI DE+ TG R A E+FG+ PD
Sbjct: 201 RPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV 260
Query: 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
P+G R ++ + G T GNPLAM AG+ ++ L+ +E
Sbjct: 261 PLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWE 308
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 128/286 (44%), Gaps = 25/286 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K L E
Sbjct: 11 PVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK--LLHVSNLYE 68
Query: 79 N----VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYH 129
N LA ++ + V F NSGTE+ ++LAR + + + I FE +H
Sbjct: 69 NPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFH 128
Query: 130 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189
G L G G P VP G +Y A ND+ ++ L + E A II+
Sbjct: 129 GRTYGSLSATGQPKFHKGF--EPLVP-GFSY----AKLNDIDSVYKLLDE---ETAGIII 178
Query: 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 248
E + G G DFL+ ++ I KE LLI DEV TG R A ++F + PD
Sbjct: 179 EVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238
Query: 249 XXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 294
P+GA R ++ + P T GNPLA AG
Sbjct: 239 LAKGLGGGVPIGAILAREEVAQSFTPGS---HGSTFGGNPLACRAG 281
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 130/279 (46%), Gaps = 33/279 (11%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAAL---GETMKKGTSF--GAPCLLENV 80
KGS +WD G EYID+ G +GH ++ AL GET+ ++ P L
Sbjct: 47 KGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALR--- 103
Query: 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHADP 134
L +I A + E V F+NSGTEA +LAR + + +II F +HG +
Sbjct: 104 LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRS-L 161
Query: 135 FLVKAGSGVATLGLPD-SPGV-PKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192
F V G G P S G PK A + + PFND+ A++ + +++ A+++EP+
Sbjct: 162 FTVSVG------GQPKYSDGFGPKPA--DIIHVPFNDLHAVKAVMDDHT---CAVVVEPI 210
Query: 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXX 251
G G A P+FL +R + E+ ALL+FDEV G R A ++GVTPD
Sbjct: 211 QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAK 270
Query: 252 XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
PV A ++I T GNPLA
Sbjct: 271 ALGGGFPVSAMLTTQEIASAFHVGS---HGSTYGGNPLA 306
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 132/297 (44%), Gaps = 26/297 (8%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL--AE 83
+GS +WD G EYID+ G +GHA ++ AL E K G E VL A+
Sbjct: 29 EGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAK 88
Query: 84 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLV 137
+I A + + V F NSG EA L+LAR F + + I+ F+ +HG F V
Sbjct: 89 KLIDATFA-DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRT-LFTV 146
Query: 138 KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197
AG A D +P + A +ND+++ L +++ A+I+EP+ G G
Sbjct: 147 SAGGQPAYS--QDFAPLPADIRH----AAYNDINSASALIDDS---TCAVIVEPIQGEGG 197
Query: 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXX 256
+ FL +R + + ALLIFDEV TG R A ++GVTPD
Sbjct: 198 VVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG 257
Query: 257 XPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313
PVGA + ++ T GNPLA L+ + P E LN +
Sbjct: 258 FPVGALLATEECARVMTVG---THGTTYGGNPLASAVAGKVLELINTP---EMLNGV 308
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 135/302 (44%), Gaps = 31/302 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 74
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K F
Sbjct: 11 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 70
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYH 129
+E LAE+ +S V F N+GTEA +++AR + ++ RI+ +H
Sbjct: 71 PQME--LAEL-LSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFH 127
Query: 130 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189
G L +G P P VP +E FN+V E+L ++ A+ L
Sbjct: 128 GRTLGSL--TATGQPKYQKPFEPLVPGFEYFE-----FNNV---EDLRRKMSEDVCAVFL 177
Query: 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXX 248
EP+ G SG + +FL R++ E ALL+FDEV G R A + +GV PD
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237
Query: 249 XXXXXXXXXPVGA--YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306
P+GA R +++E P T GNPLA AG+ +K L + G
Sbjct: 238 TAKGLGGGVPIGAVIVNERANVLE------PGDHGTTFGGNPLACRAGVTVIKELTKEGF 291
Query: 307 YE 308
E
Sbjct: 292 LE 293
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 135/303 (44%), Gaps = 33/303 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K +
Sbjct: 23 PATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNR 82
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCY 128
P + LAE+ +S V F N+GTEA +++AR + ++ RI+ +
Sbjct: 83 P---QXELAEL-LSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188
HG L +G P P VP +E FN+V E+L ++ A+
Sbjct: 139 HGRTLGSL--TATGQPKYQKPFEPLVPGFEYFE-----FNNV---EDLRRKXSEDVCAVF 188
Query: 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXX 247
LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV PD
Sbjct: 189 LEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVL 248
Query: 248 XXXXXXXXXXPVGA--YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
P+GA R +++E P T GNPLA AG+ +K L + G
Sbjct: 249 TTAKGLGGGVPIGAVIVNERANVLE------PGDHGTTFGGNPLACRAGVTVIKELTKEG 302
Query: 306 TYE 308
E
Sbjct: 303 FLE 305
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 21/305 (6%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 117
Query: 79 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 135
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 118 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 177
Query: 136 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 178 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQD--PNVAAFMVE 230
Query: 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 249
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 231 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 290
Query: 250 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 291 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYGGNPLGCRVAIAALEVLEEENLAE 347
Query: 309 YLNKI 313
+K+
Sbjct: 348 NADKL 352
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 21/305 (6%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +
Sbjct: 22 PVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 80
Query: 79 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 135
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 81 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 140
Query: 136 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 141 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQD--PNVAAFMVE 193
Query: 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 249
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 194 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 253
Query: 250 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 254 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYGGNPLGCRVAIAALEVLEEENLAE 310
Query: 309 YLNKI 313
+K+
Sbjct: 311 NADKL 315
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 21/305 (6%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T +
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 117
Query: 79 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 135
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 118 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 177
Query: 136 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 178 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQD--PNVAAFMVE 230
Query: 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 249
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 231 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 290
Query: 250 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 291 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HGSTYGGNPLGCRVAIAALEVLEEENLAE 347
Query: 309 YLNKI 313
+K+
Sbjct: 348 NADKL 352
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 143/337 (42%), Gaps = 48/337 (14%)
Query: 4 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 63
GV PV ++ GG + + G+ + D+ + +G+ P ++ DQV E
Sbjct: 57 GVTLPVFVVRAGGG---IVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQV-----E 108
Query: 64 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFV--NSGTEACMGVLRLARAFTGRERI 121
P +AE + P R V NSG EA +++ARA T ++ +
Sbjct: 109 QFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQAV 168
Query: 122 IKFEGCYHGHADPFLV--------KAGSGVATLGLPDSPGVPKGATYETLTAPFND---- 169
+ F+ YHG + + K+G G P +P + + ++ P+ D
Sbjct: 169 VAFDYAYHGRTNLTMALTAKSMPYKSGFG------PFAPEIYRA----PVSYPYRDNLLD 218
Query: 170 ----------VSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 217
NL + G +AA+I+EP+ G GFI P FL A++R ++N
Sbjct: 219 KDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDND 278
Query: 218 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAG 276
+ I DEV TGF R A ++ V PD P+ A GR +IM+ +G
Sbjct: 279 VVFIADEVQTGFARTGAMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSG 338
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313
GT GNP+A A + T++ ++ G E +I
Sbjct: 339 ---LGGTFGGNPVACAAALATIETIERDGMVERARQI 372
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K L
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK---------L 75
Query: 78 ENVLAEMVISAV------------PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125
+++ +EM+ V P ++ +++G E+ +R+A+ TG+ I+ F
Sbjct: 76 DHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFA 135
Query: 126 GCYHG------HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENL 176
+HG A + G G A +G S +P TY ++ ++ L+
Sbjct: 136 QSWHGMTGAAASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYA 192
Query: 177 FE----NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
F+ + G +AA I EP++ + G I ++ A++R + G LLI DE TG R
Sbjct: 193 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 252
Query: 232 AYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 291
A + GVTPD P+ A I E G ++ +S +PL
Sbjct: 253 GTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPA 311
Query: 292 TAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323
G+ L ++ G N + L +G++D
Sbjct: 312 AVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 343
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 21/305 (6%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T +
Sbjct: 59 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYN 117
Query: 79 NVLAEM--VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER-IIKFEGCYHGHADPF 135
NVL E I+ + + V +N+G EA +LAR + + I K++ A F
Sbjct: 118 NVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNF 177
Query: 136 LVKAGSGVATLGLPDS-----PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190
+ S +++ P S P +P ++ + P+ND+ ALE ++ +AA ++E
Sbjct: 178 WGRTLSAISSSTDPTSYDGFGPFMP---GFDII--PYNDLPALERALQD--PNVAAFMVE 230
Query: 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX 249
P+ G +G + P P +L +R + + L I DE+ TG R A +Y V PD
Sbjct: 231 PIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL 290
Query: 250 -XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
PV A DIM + P T GNPL I L+ L+E E
Sbjct: 291 GKALSGGLYPVSAVLCDDDIMLTIKPGE---HFSTYGGNPLGCRVAIAALEVLEEENLAE 347
Query: 309 YLNKI 313
+K+
Sbjct: 348 NADKL 352
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 144/332 (43%), Gaps = 39/332 (11%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K L
Sbjct: 23 EPMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGK---------L 73
Query: 78 ENVLAEMVISAV------------PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125
+++ +EM+ V P ++ +++G E+ +R+A+ TG+ I+ F
Sbjct: 74 DHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFA 133
Query: 126 GCYHG------HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENL 176
+HG A + G G A +G S +P TY ++ ++ L+
Sbjct: 134 QSWHGMTGAAASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYA 190
Query: 177 FE----NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
F+ + G +AA I EP++ + G I ++ A++R + G LLI DE TG R
Sbjct: 191 FDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 250
Query: 232 AYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 291
A + GVTPD P+ A I E G ++ +S +PL
Sbjct: 251 GTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPA 309
Query: 292 TAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323
G+ L ++ G N + L +G++D
Sbjct: 310 AVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 341
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 140/323 (43%), Gaps = 21/323 (6%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 83
Query: 78 ENVL---AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG---- 130
V+ + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 143
Query: 131 --HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNK 181
A + G G A +G S +P TY ++ ++ L+ F+ +
Sbjct: 144 AASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 200
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
G +AA I EP++ + G I ++ A++R + G LLI DE TG R A +
Sbjct: 201 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 260
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD P+ A I E G ++ +S +PL G+ L
Sbjct: 261 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDV 319
Query: 301 LKEPGTYEYLNKITGELTQGIID 323
++ G N + L +G++D
Sbjct: 320 VQRDGLVARANVMGDRLRRGLLD 342
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 21/323 (6%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
+P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLS 84
Query: 78 ENV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG---- 130
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 85 RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGA 144
Query: 131 --HADPFLVKAGSGVATLGLPDSPGVPKGATYE---TLTAPFNDVSALENLFE----NNK 181
A + G G A +G S +P TY ++ ++ L+ F+ +
Sbjct: 145 AASATYSAGRKGVGPAAVG---SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSS 201
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 240
G +AA I EP++ + G I ++ A++R + G LLI DE TG R A +
Sbjct: 202 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 261
Query: 241 GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPD P+ A I E G ++ +S +PL G+ L
Sbjct: 262 GVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDV 320
Query: 301 LKEPGTYEYLNKITGELTQGIID 323
++ G N + L +G++D
Sbjct: 321 VQRDGLVARANVMGDRLRRGLLD 343
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 132/320 (41%), Gaps = 59/320 (18%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDY--------VGSWGPAIIGHADDQVLAALGETMKKGTS 70
P+ + G + D DGN+ ID+ VG+ PA++ QV A
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAA----------- 99
Query: 71 FGAPCLLEN------VLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERII 122
F C + +AE + P R NSG EA +++ARA+T R+ ++
Sbjct: 100 FTHTCFMVTPYEGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQAVV 159
Query: 123 KFEGCYHGHADPFLVKAGSGVATLGLPDSP-----GVPKGATYETLTA-PFND------- 169
F+ YHG + + + P G Y T+ PF D
Sbjct: 160 VFDHAYHGRTNLTMAMTAK--------NQPYKHGFGPFANEVYRVPTSYPFRDGETDGAA 211
Query: 170 -VSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226
+ +L G +AA+++EPV G GF+ P P FL A+++ +NGA+ + DEV
Sbjct: 212 AAAHALDLINKQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQ 271
Query: 227 TGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPM--YQAGT 283
TGF R A E+ V PD P+ A GR +IM+ GP GT
Sbjct: 272 TGFARTGALFACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMD-----GPQSGGLGGT 326
Query: 284 LSGNPLAMTAGIHTLKRLKE 303
GNPLA A + + ++
Sbjct: 327 YGGNPLACAAALAVIDTIER 346
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 125/293 (42%), Gaps = 32/293 (10%)
Query: 6 NSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 65
S V A G P+ + G + D+DGN +ID +G +D V+AA
Sbjct: 34 RSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAA---VQ 90
Query: 66 KKGTSFGAPCLLEN------VLAEMVISAVPSIEMVRFV--NSGTEACMGVLRLARAFTG 117
+ F C + + E + P R V NSG EA +++AR TG
Sbjct: 91 EAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG 150
Query: 118 RERIIKFEGCYHGHAD---PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND----V 170
R+ ++ F+ YHG + KA G P +P V + ++ PF + +
Sbjct: 151 RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFG-PFAPEVYR----MPMSYPFREENPEI 205
Query: 171 SALE------NLFENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222
+ E + E G ++AAII+EP+ G GFI P FL A+ KE G + I
Sbjct: 206 TGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIA 265
Query: 223 DEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP 274
DEV +GF R A ++ GV PD P+ A GR D+++ V P
Sbjct: 266 DEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHP 318
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/308 (29%), Positives = 127/308 (41%), Gaps = 34/308 (11%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGAPCL 76
P+ G + D DGN +ID +G H A T T F
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 77 LENV-LAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133
+ V +AE++ + P R NSG EA +++AR TGR ++ F+ YHG +
Sbjct: 107 EQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTN 166
Query: 134 -----------------PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 176
PF + A+ L D PG+ T E A +S +E
Sbjct: 167 LTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL----TGEE--AARRAISRIET- 219
Query: 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235
+ +AAII+EP+ G GFI P P FL + ENG + I DEV TGF R
Sbjct: 220 -QIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF 278
Query: 236 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGI 295
A E+ G+ PD P+ A GR ++M+ V GT GNP+ A +
Sbjct: 279 ASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVY---AGGLGGTYGGNPVTCAAAV 335
Query: 296 HTLKRLKE 303
L ++E
Sbjct: 336 AALGVMRE 343
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 144/342 (42%), Gaps = 37/342 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+V D +G ++D+DGN+Y+D+ G +G + +G + + A
Sbjct: 25 PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 79 NV----LAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132
N+ LA+ +++ P + V F NSGTEA +++ + TGR+ II F G +HG
Sbjct: 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-TGRKYIIAFLGGFHGRT 143
Query: 133 DPFLVKAGSGVATLGL--PDSPGVPKGATYETLTAPFNDVSALEN--------------- 175
+ S + P PGV P++ ++ EN
Sbjct: 144 FGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWH-INGYENPSELVNRVIEFIEDY 202
Query: 176 LFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232
+F N E+A I EP+ G G++ P +F ++++ K+ G LL+ DEV G R
Sbjct: 203 IFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTG 262
Query: 233 YGGAQEYFGVTPDXXXXXXXX-XXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 291
A E F PD P+GA R+D+ P + T GN LA
Sbjct: 263 KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL-----DFKPGMHSNTFGGNALAC 317
Query: 292 TAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 331
G + +K+ P E + KI E QG+ D + G A
Sbjct: 318 AIGSKVIDIVKDLLPHVNE-IGKIFAEELQGLADDVRGIGLA 358
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 141/345 (40%), Gaps = 64/345 (18%)
Query: 4 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 63
G PV A ++ GG + + V G+ + D+ + VG+ P ++ QV
Sbjct: 40 GTTMPVYAVRAGGG---IVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV------ 90
Query: 64 TMKKGTSFGAPCLL----ENVLAEMVISAVPSIEMVR------FVNSGTEACMGVLRLAR 113
F C + E +A V + + VR NSG+EA +++AR
Sbjct: 91 -----GDFTHTCFMVTPYEGYVA--VCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIAR 143
Query: 114 AFTGRERIIKFEGCYHGHADPFLV--------KAGSGVATLGLPDSPGVPKGATYETLTA 165
+ T + ++ F+ YHG + + K G G P +P + + L+
Sbjct: 144 SHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFG------PFAPEIYRAP----LSY 193
Query: 166 PFNDVSALENLFENNK----------------GEIAAIILEPVVGNSGFIAPKPDFLNAI 209
PF D + L + + +AA+++EP+ G GFI P FL +
Sbjct: 194 PFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTL 253
Query: 210 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDI 268
++N + I DEV TGF R A E+ G+ PD P+ A GR +I
Sbjct: 254 LDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEI 313
Query: 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313
M+ +G GT GNP+A A + T++ ++ G +I
Sbjct: 314 MDSPHVSG---LGGTYGGNPIACAAALATIETIESEGLVARAQQI 355
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ AP
Sbjct: 373 PV------------NMAALQKFFVEQGVWIAP 392
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 133/310 (42%), Gaps = 21/310 (6%)
Query: 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 79
IV + +G +++D +Y+D+ G +G+ + A + + K EN
Sbjct: 20 IVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNEN 79
Query: 80 VLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRE-----RIIKFEGCYHGHAD 133
+ A A S +E V F NSGTE+ G + AR + + + I F+ +HG
Sbjct: 80 IAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGVKGGQFIAFKHSFHGRTL 139
Query: 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193
L + + P P + G + A +ND+S++E L + AIILE V
Sbjct: 140 GAL--SLTANEKYQKPFKPLIS-GVKF----AKYNDISSVEKLVNE---KTCAIILESVQ 189
Query: 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXXXXX 252
G G DF A+R++ E LLI DE+ G R A E+ + PD
Sbjct: 190 GEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIXTSAKA 249
Query: 253 XXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KEPGTYEYLN 311
VGA+ + + AG T GNPL + AG++ + + KE E +N
Sbjct: 250 LGCGLSVGAFVINQKVASNSLEAGD--HGSTYGGNPL-VCAGVNAVFEIFKEEKILENVN 306
Query: 312 KITGELTQGI 321
K+T L Q +
Sbjct: 307 KLTPYLEQSL 316
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 130/318 (40%), Gaps = 32/318 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT-LTSRAFHS 77
Query: 79 NVLAEMV--ISAVPSIEMVRFVNSGTEACMGVLRLARAFT--------GRERIIKFEGCY 128
+ L ++ + + EMV +N+G EA ++ AR + R II E +
Sbjct: 78 DQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNF 137
Query: 129 HGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187
HG + + + G P PG+ + P+ D+ AL+ N AA
Sbjct: 138 HGRTMGAVSMSSNEEYKRGFGPMLPGI--------IVIPYGDLEALKAAITPNT---AAF 186
Query: 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDX 246
ILEP+ G +G P FL + K+ L + DE+ TG R A ++ VTPD
Sbjct: 187 ILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM 246
Query: 247 XXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
P+ RDI+ + P T GNPLA I L+ L+E
Sbjct: 247 YILGXALGGGVFPISCAAANRDILGVFEPGS---HGSTFGGNPLACAVSIAALEVLEEEK 303
Query: 306 TYEYL----NKITGELTQ 319
E K+ G+L +
Sbjct: 304 LTERSLQLGEKLVGQLKE 321
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 124/319 (38%), Gaps = 19/319 (5%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+V KG ++DI+ Y D++ ++ GH +L A+ KK T +
Sbjct: 29 PVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKLTICSRAFFSD 88
Query: 79 NV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 137
++ + E ++ + + V +N+G EA +L R + + I A +
Sbjct: 89 SLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKWGYEVKKIP-----ENSAKIIVC 143
Query: 138 KAGSGVATLGLPDSPGVPKGATY------ETLTAPFNDVSALENLFENNKGEIAAIILEP 191
TLG + K L P++D+ ALE ++ + A I+EP
Sbjct: 144 NNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEALEKELQD--PNVCAFIVEP 201
Query: 192 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX- 249
V G +G I P + + + K+ L + DEV TG R ++GV PD
Sbjct: 202 VQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVKPDVILLG 261
Query: 250 XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309
P+ A D+M ++ P T GNPLA + LK L E
Sbjct: 262 KALSGGHYPISAILANDDVMLVLKPGE---HGSTYGGNPLAAAICVEALKVLINEKLCEN 318
Query: 310 LNKITGELTQGIIDAGKKA 328
+K+ Q + + K +
Sbjct: 319 ADKLGAPFLQNLKEQLKDS 337
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 121/316 (38%), Gaps = 27/316 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS-----FGA 73
P+V KG ++D++ Y D++ ++ GH +L A+ K T F
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133
P + E ++ + + V +N+G EA +L R + + I A
Sbjct: 108 PL----GICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP-----ENMAK 158
Query: 134 PFLVKAGSGVATLGLPDSPGVPKGATY------ETLTAPFNDVSALENLFENNKGEIAAI 187
+ K TLG + K + + P++D+ ALE E + A
Sbjct: 159 IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE--ELKDPNVCAF 216
Query: 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDX 246
I+EP+ G +G I P ++L + I K+ L + DEV TG R ++ V PD
Sbjct: 217 IVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDV 276
Query: 247 XXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
P+ A DIM ++ P T GNPLA + + L L
Sbjct: 277 ILLGKALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEK 333
Query: 306 TYEYLNKITGELTQGI 321
E K+ G + +
Sbjct: 334 LCENAEKLGGPFLENL 349
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 160/392 (40%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 160/392 (40%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKGEARDRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 160/392 (40%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG+ G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHGNT--------FGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 36/339 (10%)
Query: 37 EYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-I 92
E +D + SW AI GH A DQ L M G LA++++ P+ +
Sbjct: 56 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL 115
Query: 93 EMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKA----GSG 142
+ V F +SG+ + ++A R G+ R++ + G YHG D FL + G
Sbjct: 116 DTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--DTFLAMSICDPHGG 173
Query: 143 VATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GN 195
+ +L +P VP+ Y+ + +A E + GE+AA+++EPVV G
Sbjct: 174 MHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGELAAVVVEPVVQGA 226
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXX 253
G P +L+ +R I + LLIFDE+ TGF R A ++ GV+PD
Sbjct: 227 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 286
Query: 254 XXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311
+ A D+ ++ AG + + T NPLA + +++ L +
Sbjct: 287 GGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRIT 346
Query: 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350
++ LT G+ A +A A+ + G G + PV
Sbjct: 347 ELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 383
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 36/339 (10%)
Query: 37 EYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-I 92
E +D + SW AI GH A DQ L M G LA++++ P+ +
Sbjct: 81 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL 140
Query: 93 EMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKA----GSG 142
+ V F +SG+ + ++A R G+ R++ + G YHG D FL + G
Sbjct: 141 DTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--DTFLAMSICDPHGG 198
Query: 143 VATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GN 195
+ +L +P VP+ Y+ + +A E + GE+AA+++EPVV G
Sbjct: 199 MHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGELAAVVVEPVVQGA 251
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXX 253
G P +L+ +R I + LLIFDE+ TGF R A ++ GV+PD
Sbjct: 252 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 311
Query: 254 XXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311
+ A D+ ++ AG + + T NPLA + +++ L +
Sbjct: 312 GGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRIT 371
Query: 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350
++ LT G+ A +A A+ + G G + PV
Sbjct: 372 ELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 408
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 145/339 (42%), Gaps = 36/339 (10%)
Query: 37 EYIDYVGSWGPAIIGH---ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS-I 92
E +D + SW AI GH A DQ L M G LA++++ P+ +
Sbjct: 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL 135
Query: 93 EMVRFVNSGTEACMGVLRLA------RAFTGRERIIKFEGCYHGHADPFLVKA----GSG 142
+ V F +SG+ + ++A R G+ R++ + G YHG D FL + G
Sbjct: 136 DTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHG--DTFLAMSICDPHGG 193
Query: 143 VATLGLPD------SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV-GN 195
+ +L +P VP+ Y+ + +A E + GE+AA+++EPVV G
Sbjct: 194 MHSLWTDVLAAQVFAPQVPR--DYDPAYS-----AAFEAQLAQHAGELAAVVVEPVVQGA 246
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDXXXX-XXXX 253
G P +L+ +R I + LLIFDE+ TGF R A ++ GV+PD
Sbjct: 247 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 306
Query: 254 XXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311
+ A D+ ++ AG + T NPLA + +++ L +
Sbjct: 307 GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRIT 366
Query: 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350
++ LT G+ A +A A+ + G G + PV
Sbjct: 367 ELAAGLTAGLDTA--RALPAVTDVRVCGAIGVIECDRPV 403
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF +
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 161/392 (41%), Gaps = 57/392 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
+HG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GFHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF R
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 232 AYGGAQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNP 288
A E+ + PD + A R++ E ++ AG T GNP
Sbjct: 255 GKLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNP 314
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
LA A +L L+ + + I +L + + A + + + G G T
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETTH 372
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 373 PV------------NMAALQKFFVEQGVWIRP 392
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 161/393 (40%), Gaps = 59/393 (15%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FG---- 72
P+V S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 73 APCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEG 126
AP + L +++ P +E V +SG+ A +++A + R+R + F
Sbjct: 86 APAI---ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRN 142
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF-----------NDVSAL 173
YHG D F G ++ PD+ + KG E L AP D+
Sbjct: 143 GYHG--DTF------GAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF 194
Query: 174 ENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF A
Sbjct: 195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG-A 253
Query: 233 YGG--AQEYFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGN 287
G A E+ + PD + A R++ E ++ AG T GN
Sbjct: 254 TGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGN 313
Query: 288 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347
PLA A +L L+ + + I +L + + A + + + G G T
Sbjct: 314 PLACAAANASLAILESGDWQQQVADIEVQLREQL--APARDAEMVADVRVLGAIGVVETT 371
Query: 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP 380
PV A + +E+GV+ P
Sbjct: 372 HPV------------NMAALQKFFVEQGVWIRP 392
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 130/334 (38%), Gaps = 42/334 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGAPC 75
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ T A
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 76 LLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG--- 130
LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 99 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 158
Query: 131 -------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENLFEN 179
H+ G+ L PD P G TL E L
Sbjct: 159 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLT--------EKLAAV 210
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239
G I A +EP+ + G I P FL I + +G L++ DEV G LA G
Sbjct: 211 PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGRLHC 268
Query: 240 F---GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG-- 294
F G PD P+ A +I++ + + TL GNP++ AG
Sbjct: 269 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCAS----AFAMQTLHGNPISAAAGLA 324
Query: 295 -IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327
+ T+ R P E ++ L G+ + K+
Sbjct: 325 VLETIDRDDLPAMAERKGRL---LRDGLSELAKR 355
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 130/334 (38%), Gaps = 42/334 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG---TSFGAPC 75
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ T A
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 76 LLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG--- 130
LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTV 145
Query: 131 -------HADPFLVKAGSGVATLGLPDS----PGVPKGATYETLTAPFNDVSALENLFEN 179
H+ G+ L PD P G TL E L
Sbjct: 146 GSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLT--------EKLAAV 197
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239
G I A +EP+ + G I P FL I + +G L++ DEV G LA G
Sbjct: 198 PAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG--LARSGRLHC 255
Query: 240 F---GVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG-- 294
F G PD P+ A +I++ + + TL GNP++ AG
Sbjct: 256 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCAS----AFAMQTLHGNPISAAAGLA 311
Query: 295 -IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327
+ T+ R P E ++ L G+ + K+
Sbjct: 312 VLETIDRDDLPAMAERKGRL---LRDGLSELAKR 342
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 31/265 (11%)
Query: 8 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 67
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 68 -----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 115
G +G P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 116 TGRERIIKFEGCYHGH--ADPFLVKAGSGVATLGLP--DSPGVP----------KGATYE 161
+ ++I YHG A L G P D +P +G E
Sbjct: 140 ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKE 199
Query: 162 TLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 221
A +++ L L ++ IAA+ +EP+ G++G + P +L R I ++ LL+
Sbjct: 200 GGIALADELLKLIEL--HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLV 257
Query: 222 FDEVMTGF-RLAYGGAQEYFGVTPD 245
FDEV+TGF R + FGVTPD
Sbjct: 258 FDEVITGFGRTGSMFGADSFGVTPD 282
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 30/321 (9%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--------GTSFGAPCLL 77
+G ++WD +GN+ ID + +G+ A M++ T+ A L
Sbjct: 40 EGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVEL 99
Query: 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGH 131
++LAE+ + + V + NSG+E+ ++R+ R + ++ +I YHG
Sbjct: 100 SSLLAEVTPAG---FDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGS 156
Query: 132 ----ADPFLVKAGSGVATLGLPDSPGVPKGATY----ETLTAPFNDVSAL---ENLFENN 180
A +K L +P + + Y + F V+A E + E
Sbjct: 157 TIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIG 216
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239
++AA + EP+ G G I P + I RI ++ LL+ DEV+ GF R ++
Sbjct: 217 ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQH 276
Query: 240 FGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 298
FG PD P+GA + + E + G T SG+P+ +
Sbjct: 277 FGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANV 336
Query: 299 KRLKEPGTYEYLNKITGELTQ 319
L++ G + + G Q
Sbjct: 337 AALRDEGIVQRVKDDIGPYMQ 357
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 106/267 (39%), Gaps = 37/267 (13%)
Query: 8 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA----DDQVLAALGE 63
P K P++ +S G + DI+G EY D S + GH DD + LG+
Sbjct: 16 PFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK 75
Query: 64 TMKKGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG----- 117
+ T G + LAE +I P + V + +SG EA L++A +
Sbjct: 76 -IAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP 134
Query: 118 -RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF--------- 167
+++ I + YHG V ++ L P +E+ AP
Sbjct: 135 EKQKFIAMKNGYHGDT-----IGAVSVGSIELFHHVYGP--LMFESYKAPIPYVYRSESG 187
Query: 168 -------NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGAL 219
+ L L E + EIAA+ +E +V G SG I +L +R + L
Sbjct: 188 DPDECRDQXLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVL 247
Query: 220 LIFDEVMTGF-RLAYGGAQEYFGVTPD 245
+I DEV TGF R A E+ V PD
Sbjct: 248 MIVDEVATGFGRTGKMFACEHENVQPD 274
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 110/262 (41%), Gaps = 27/262 (10%)
Query: 8 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA----DDQVLAALGE 63
P K P++ +S G + DI+G EY D S + GH DD + LG+
Sbjct: 16 PFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK 75
Query: 64 TMKKGTSFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG----- 117
+ T G + LAE +I P + V + +SG EA L++A +
Sbjct: 76 -IAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP 134
Query: 118 -RERIIKFEGCYHGHADPF-LVKAGS-----GVATLGLPDSPGVPKGATYETLTAPFND- 169
+++ I + YHG D V GS V + +S P Y + + ++
Sbjct: 135 EKQKFIAMKNGYHG--DTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDEC 192
Query: 170 ----VSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDE 224
+ L L E + EIAA+ +E +V G SG I +L +R + L+I DE
Sbjct: 193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDE 252
Query: 225 VMTGF-RLAYGGAQEYFGVTPD 245
V TGF R A E+ V PD
Sbjct: 253 VATGFGRTGKMFACEHENVQPD 274
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 127/302 (42%), Gaps = 39/302 (12%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQV---LAALGETMK--KGTSFGAPCLLE 78
+G ++D G Y+D GS G + IGH +V +AA + G+ F + L E
Sbjct: 19 EGVFLYDDAGRRYLD--GSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEE 76
Query: 79 NV--LAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAF------TGRERIIKFEGCY 128
LA V + RF V+ G+EA ++LAR + GR ++I Y
Sbjct: 77 YAGRLARFV-----GLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSY 131
Query: 129 HGHADPFLVKAGSGV-----ATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKG 182
HG + L +G G L P++ P +PK D L L E
Sbjct: 132 HGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA---EDAEGLRALLEREGP 188
Query: 183 E-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QE 238
E +AA + EPVVG S +AP P + +R I E G + I DEVM+G R A
Sbjct: 189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248
Query: 239 YFGVTPDXXXX-XXXXXXXXPVGAYGGRRDIMEMVAPAGPMYQAG-TLSGNPLAMTAGIH 296
+ GVTPD P+ + E V + G T +G+P+++ AG+
Sbjct: 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLS 308
Query: 297 TL 298
L
Sbjct: 309 VL 310
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 113/306 (36%), Gaps = 40/306 (13%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV--LAE 83
+G + DI G Y+D G+ ++ A + ++ + F E LAE
Sbjct: 39 EGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEPAIKLAE 98
Query: 84 MVISAVPSIEMVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHA-------- 132
+ + ++ F NSG+EA ++AR + G KF Y G+
Sbjct: 99 KLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXA 158
Query: 133 -----------DPFLVKAGSGVATLGLPDS---PGVPKGATYETLTAPFNDVSALENLFE 178
+PF SG + PD PG+ + Y+ D L E
Sbjct: 159 ATGQAQRRYQYEPF----ASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXTWELSE 214
Query: 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237
IAA I EP++ G + D+ A+ +++GALLI DEV+ GF R
Sbjct: 215 T----IAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGF 270
Query: 238 EYFGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGP---MYQAGTLSGNPLAMTA 293
+ V PD P+ A +R+I E G T GNP A
Sbjct: 271 XNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACAL 330
Query: 294 GIHTLK 299
+ L+
Sbjct: 331 ALKNLE 336
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 170 VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228
V+ LE L E + IAA I EP++G G + P + AI+ + ++ LL+ DEV+TG
Sbjct: 206 VAELEALIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTG 265
Query: 229 F-RLAYGGAQEYFGVTPDXXXXXXX--XXXXXPVGAYGGRRDIMEMVAPA----GPMYQA 281
F RL +++G+ PD P+ + +++ GP+
Sbjct: 266 FGRLGTXFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHG 325
Query: 282 GTLSGNPLAMTAGIHTLKRLKE 303
T S +P+ AG+ LK L E
Sbjct: 326 WTYSAHPIGAAAGVANLKLLDE 347
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 122/313 (38%), Gaps = 40/313 (12%)
Query: 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVL 81
+G +WD +G + ID +G+ ++ A+ K + G L
Sbjct: 41 EGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITL 100
Query: 82 AEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYHGHADP 134
A+ +I P V F SG++A ++L + +++II YHG
Sbjct: 101 AKXIIDRAPKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG-- 158
Query: 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGE------- 183
V GS ++ +P+ T AP+ D S E F + +
Sbjct: 159 --VXTGSLTGLDLFHNAFDLPRAPVLHT-EAPYYFRRTDRSXSEEQFSQHCADKLEEXIL 215
Query: 184 ------IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 236
IAA I EP++G G + P + I+ + K+ LL+ DEV+TGF RL
Sbjct: 216 AEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFG 275
Query: 237 QEYFGVTPDXXXXXXX--XXXXXPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLA 290
+++G+ PD P+ + +++ G + T S +P+
Sbjct: 276 SDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPIC 335
Query: 291 MTAGIHTLKRLKE 303
+ AG+ L+ + E
Sbjct: 336 VAAGVANLELIDE 348
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 235
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 236 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 292
A + V PD G GRR ++ VA A P A T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLASTWGGNLTDMV 339
Query: 293 AGIHTLKRLKEPGTYE 308
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 235
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 236 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 292
A + V PD G GRR ++ VA A P T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSTWGGNLTDMV 339
Query: 293 AGIHTLKRLKEPGTYE 308
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 235
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 236 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 292
A + V PD G GRR ++ VA A P T GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSTWGGNLTDMV 339
Query: 293 AGIHTLKRLKEPGTYE 308
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 9/136 (6%)
Query: 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGG 235
FE +IA + EP+ G G +P+F A+R + E ALLIFDEV TG L
Sbjct: 225 FETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW 284
Query: 236 AQEYFGVTPDXXXXXXXXXXXXPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMT 292
A + V PD G GRR ++ VA A P + GN M
Sbjct: 285 AYQQLDVAPDIVAFGKKTQV---CGVMAGRR--VDEVADNVFAVPSRLNSSWGGNLTDMV 339
Query: 293 AGIHTLKRLKEPGTYE 308
L+ ++ G +E
Sbjct: 340 RARRILEVIEAEGLFE 355
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 117/316 (37%), Gaps = 24/316 (7%)
Query: 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPCL 76
V +G + D +G E +D + IG+ D++ M++ T F +
Sbjct: 40 VITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHV 99
Query: 77 LENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTG------RERIIKFEGCYH 129
LA+ + P + V F G+EA +R+ R + + II + YH
Sbjct: 100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYH 159
Query: 130 GH---ADPFLVKAGSGVATLGLPDSPGV------PKGATYETLTAPFNDVSALEN-LFEN 179
G + AG + +PD + +G + LE + E
Sbjct: 160 GSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILEL 219
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238
+ +AA I EPV G G I + I+RI + LLI DEV+ GF R +
Sbjct: 220 GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQ 279
Query: 239 YFGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 297
G+ P P+G ++ ++ T SG+P+A +
Sbjct: 280 TMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALEN 338
Query: 298 LKRLKEPGTYEYLNKI 313
L+ L+E +++ +
Sbjct: 339 LRILEEENILDHVRNV 354
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 132/330 (40%), Gaps = 40/330 (12%)
Query: 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL 76
QP V +G ++ DG ID A +G+ +++ A+ + +P
Sbjct: 36 AQP-VLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMV-LPYASPWY 93
Query: 77 LENV----LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT---GRER----IIKF 124
+ LAE + + P + + F G+ A LR + + GR + I+++
Sbjct: 94 MATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRY 153
Query: 125 EGCYHGHAD------------PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VS 171
+G YHG P A ++ L P+ P+ A + A +D V
Sbjct: 154 DG-YHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPN----PRHAGNRSQEAFLDDLVQ 208
Query: 172 ALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 230
E+ E+ IAA + EP++ + G I P + + I +++ L I DEV+TGF
Sbjct: 209 EFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFG 268
Query: 231 LA--YGGAQEYFGVTPDXXXXXX-XXXXXXPVGAYGGRRDIMEMVA---PAGPMYQAG-T 283
+ +++ FGV PD P+G ++ ++ G + G T
Sbjct: 269 RCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYT 328
Query: 284 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313
S P+A A + ++ ++ G + ++
Sbjct: 329 YSNQPVACAAALANIELMEREGIVDQAREM 358
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 56/259 (21%)
Query: 22 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL----L 77
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 49 YEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPP 108
Query: 78 ENV---LAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLAR-------AFTGRE--- 119
EN L E ++S P I M S A + R AF+ E
Sbjct: 109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELET 168
Query: 120 ------------RIIKFEGCYHGHADPFLVKAGS-GVATLGLP--DSPGVPKGATYETLT 164
I+ F G +HG L S + + +P D P P + L
Sbjct: 169 CMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAP----FPRLK 224
Query: 165 APFND------------VSALENL---FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209
P + + +E+L + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 210 RRITKENGALLIFDEVMTG 228
R I++++G + DEV TG
Sbjct: 285 RDISRKHGCAFLVDEVQTG 303
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 133 DPFLVKAGSGVATLGLPDSPG--VPKGATYETLTAPFN---DVSALENLFE--------- 178
DP V +G + LP+S P+ T+ + F+ D S L ++
Sbjct: 526 DPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585
Query: 179 ----NNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232
+ A+I+EPV+ G G P F + + +IFDEV TGF RL
Sbjct: 586 HSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG 645
Query: 233 YGGAQEYFGVTPD 245
E G PD
Sbjct: 646 VETTTELLGCKPD 658
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 133 DPFLVKAGSGVATLGLPDSPG--VPKGATYETLTAPFN---DVSALENLFE--------- 178
DP V +G + LP+S P+ T+ + F+ D S L ++
Sbjct: 526 DPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585
Query: 179 ----NNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232
+ A+I+EPV+ G G P F + + +IFDEV TGF RL
Sbjct: 586 HSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG 645
Query: 233 YGGAQEYFGVTPD 245
E G PD
Sbjct: 646 VETTTELLGCKPD 658
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 88/235 (37%), Gaps = 28/235 (11%)
Query: 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPC 75
+V +G ++ D++G Y+D + G ++ A ++ +FG
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMS 110
Query: 76 LLENVLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCY 128
+L+E ++ P V + NSG+EA + L A + +I+ Y
Sbjct: 111 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAY 170
Query: 129 HGHADPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALEN 175
HG G + GLP PG +G T E A LE
Sbjct: 171 HGATAVSASMTGFPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEE 227
Query: 176 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 228 TIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGF 282
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 87/235 (37%), Gaps = 28/235 (11%)
Query: 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPC 75
+V +G ++ D++G Y+D + G ++ A ++ FG
Sbjct: 45 VVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMS 104
Query: 76 LLENVLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCY 128
+L+E ++ P V + NSG+EA + L A + +I+ Y
Sbjct: 105 DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAY 164
Query: 129 HGHADPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALEN 175
HG G + GLP PG +G T E A LE
Sbjct: 165 HGVTAVSASMTGKPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEE 221
Query: 176 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 222 TIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 276
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 85/235 (36%), Gaps = 28/235 (11%)
Query: 20 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAPC 75
+V +G ++ D++G Y+D + G ++ A ++ FG
Sbjct: 51 VVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXS 110
Query: 76 LLENVLAEMVISAVP-SIEMVRFVNSGTEA------CMGVLRLARAFTGRERIIKFEGCY 128
L+E ++ P V + NSG+EA + L A + +I+ Y
Sbjct: 111 DQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAY 170
Query: 129 HGHADPFLVKAGSGV-ATLGLPDSPGV------------PKGATYETLTAPFNDVSALEN 175
HG G + GLP PG +G T E A LE
Sbjct: 171 HGVTAVSASXTGKPYNSVFGLP-LPGFVHLTCPHYWRYGEEGETEEQFVARL--ARELEE 227
Query: 176 LFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + IA EPV G G I P + AI I ++ +I DEV+ GF
Sbjct: 228 TIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 282
>pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 155
RFV T + G LR+ +F +R KF D FL K G T D+
Sbjct: 96 RFVTVQTISGTGALRVGASFL--QRFFKFS------RDVFLPKPSWGNHTPIFRDAGMQL 147
Query: 156 KGATY-ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 214
+G Y + T F+ ALE++ + E + ++L N + P+P+ I + K
Sbjct: 148 QGYRYYDPKTCGFDFSGALEDI--SKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVK 205
Query: 215 ENGALLIFDEVMTGF 229
+ FD GF
Sbjct: 206 KKNLFAFFDMAYQGF 220
>pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3HLM|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
AminotransferaseKYNURENINE AMINOTRANSFERASE IV
pdb|3PD6|B Chain B, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PD6|D Chain D, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase, A Newly Identified Kynurenine
Aminotransferase-Iv
pdb|3PDB|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
pdb|3PDB|C Chain C, Crystal Structure Of Mouse Mitochondrial Aspartate
Aminotransferase In Complex With Oxaloacetic Acid
Length = 401
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVP 155
RFV T + G LR+ +F +R KF D FL K G T D+
Sbjct: 96 RFVTVQTISGTGALRVGASFL--QRFFKFS------RDVFLPKPSWGNHTPIFRDAGMQL 147
Query: 156 KGATY-ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 214
+G Y + T F+ ALE++ + E + ++L N + P+P+ I + K
Sbjct: 148 QGYRYYDPKTCGFDFSGALEDI--SKIPEQSVLLLHACAHNPTGVDPRPEQWKEIASVVK 205
Query: 215 ENGALLIFDEVMTGF 229
+ FD GF
Sbjct: 206 KKNLFAFFDMAYQGF 220
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
IA EPV+G G I P + AI I ++ +I DEV+ GF
Sbjct: 229 IAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGF 274
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 67 KGTSFGAPC---LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119
+G SFGA C L+E+VLAE E+ + TE GV+ R F G++
Sbjct: 294 EGISFGASCPLSLVESVLAE---------EIAKLPEQKTEVFRGVMEQLRWFAGKQ 340
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 67 KGTSFGAPC---LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119
+G SFGA C L+E+VLAE E+ + TE GV+ R F G++
Sbjct: 294 EGISFGASCPLSLVESVLAE---------EIAKLPEQKTEVFRGVMEQLRWFAGKQ 340
>pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate
Lactonizing Enzyme
Length = 370
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 201 PKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239
P+ +F A+RR+T++NG ++ DE ++ A+ A+++
Sbjct: 224 PRANF-GALRRLTEQNGVAILADESLSSLSSAFELARDH 261
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 200 APKPDFLNAIRRITKENGALLIF-DEVMTGFRLAYGGAQEYFGVTP 244
PKPD + +R T G +L+F D+ ++G +L G ++ V P
Sbjct: 165 CPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPP 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,007,682
Number of Sequences: 62578
Number of extensions: 581273
Number of successful extensions: 1843
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 101
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)