Query 015230
Match_columns 411
No_of_seqs 148 out of 1899
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 08:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ao9_A Beta-phenylalanine amin 100.0 3.4E-68 1.2E-72 503.2 40.4 391 1-411 55-446 (454)
2 4atq_A 4-aminobutyrate transam 100.0 9.3E-62 3.2E-66 461.7 43.5 384 18-410 46-454 (456)
3 4e77_A Glutamate-1-semialdehyd 100.0 1.2E-60 4.1E-65 457.6 44.0 411 1-411 18-429 (429)
4 3l44_A Glutamate-1-semialdehyd 100.0 7.7E-61 2.6E-65 459.7 40.9 410 1-410 19-429 (434)
5 3k28_A Glutamate-1-semialdehyd 100.0 5.6E-61 1.9E-65 459.7 39.0 410 1-411 18-427 (429)
6 4e3q_A Pyruvate transaminase; 100.0 3.6E-61 1.2E-65 459.2 34.8 389 18-410 49-467 (473)
7 3fq8_A Glutamate-1-semialdehyd 100.0 3.7E-60 1.3E-64 454.0 41.6 411 1-411 17-427 (427)
8 2e7u_A Glutamate-1-semialdehyd 100.0 1.6E-56 5.6E-61 428.2 38.1 407 1-408 17-424 (424)
9 2epj_A Glutamate-1-semialdehyd 100.0 7.4E-56 2.5E-60 425.0 39.5 408 1-410 23-430 (434)
10 2yky_A Beta-transaminase; tran 100.0 4.2E-61 1.4E-65 458.2 0.0 391 1-411 68-460 (465)
11 3i5t_A Aminotransferase; pyrid 100.0 1.4E-55 4.8E-60 426.2 38.5 396 5-410 22-453 (476)
12 3oks_A 4-aminobutyrate transam 100.0 1.3E-54 4.6E-59 417.4 42.9 378 17-410 42-450 (451)
13 4ffc_A 4-aminobutyrate aminotr 100.0 1.1E-54 3.8E-59 418.0 41.9 376 17-410 45-448 (453)
14 3tfu_A Adenosylmethionine-8-am 100.0 5.8E-55 2E-59 419.8 35.4 379 17-411 53-453 (457)
15 3n5m_A Adenosylmethionine-8-am 100.0 1.6E-54 5.5E-59 417.7 38.6 399 5-411 20-452 (452)
16 3hmu_A Aminotransferase, class 100.0 1.8E-54 6E-59 417.8 35.7 380 18-410 37-451 (472)
17 3gju_A Putative aminotransfera 100.0 1.3E-53 4.3E-58 412.0 38.5 392 15-410 30-455 (460)
18 3dod_A Adenosylmethionine-8-am 100.0 2.8E-54 9.5E-59 415.4 33.3 402 5-410 13-442 (448)
19 4a6r_A Omega transaminase; tra 100.0 3.3E-53 1.1E-57 409.0 37.1 397 5-410 18-448 (459)
20 2cy8_A D-phgat, D-phenylglycin 100.0 6.5E-53 2.2E-57 406.6 36.3 401 1-410 25-434 (453)
21 3dxv_A Alpha-amino-epsilon-cap 100.0 4E-51 1.4E-55 392.7 38.4 377 18-411 25-425 (439)
22 3nx3_A Acoat, acetylornithine 100.0 2.8E-51 9.7E-56 388.5 36.1 369 16-411 16-395 (395)
23 4a0g_A Adenosylmethionine-8-am 100.0 1.2E-52 4.1E-57 425.5 25.6 401 5-411 342-828 (831)
24 3i4j_A Aminotransferase, class 100.0 7.1E-51 2.4E-55 390.0 36.6 383 16-410 9-427 (430)
25 1z7d_A Ornithine aminotransfer 100.0 1.7E-50 5.8E-55 386.8 36.5 368 18-410 47-428 (433)
26 2oat_A Ornithine aminotransfer 100.0 3.2E-50 1.1E-54 385.4 37.1 368 18-411 58-439 (439)
27 1zod_A DGD, 2,2-dialkylglycine 100.0 1E-49 3.4E-54 382.4 35.0 387 18-410 25-431 (433)
28 2pb2_A Acetylornithine/succiny 100.0 1.9E-49 6.6E-54 378.3 35.2 369 17-410 38-417 (420)
29 2cjg_A L-lysine-epsilon aminot 100.0 9.5E-50 3.3E-54 383.4 31.5 365 22-410 39-447 (449)
30 3a8u_X Omega-amino acid--pyruv 100.0 1.1E-48 3.8E-53 376.8 33.1 384 18-411 32-447 (449)
31 4adb_A Succinylornithine trans 100.0 2.3E-47 7.7E-52 363.1 36.7 371 15-410 18-399 (406)
32 1s0a_A Adenosylmethionine-8-am 100.0 3.1E-47 1.1E-51 364.6 36.8 372 18-410 24-423 (429)
33 1ohv_A 4-aminobutyrate aminotr 100.0 1.4E-47 4.8E-52 369.8 32.5 371 18-411 45-471 (472)
34 2eo5_A 419AA long hypothetical 100.0 4.9E-46 1.7E-50 354.9 38.0 359 18-411 24-418 (419)
35 3ruy_A Ornithine aminotransfer 100.0 3.9E-46 1.3E-50 352.9 36.1 364 15-409 15-392 (392)
36 1sff_A 4-aminobutyrate aminotr 100.0 1E-44 3.5E-49 346.9 38.3 378 18-410 23-423 (426)
37 2ord_A Acoat, acetylornithine 100.0 1.4E-44 4.9E-49 342.7 35.5 366 17-411 21-397 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 4.4E-43 1.5E-47 332.3 33.8 363 16-409 25-395 (395)
39 2eh6_A Acoat, acetylornithine 100.0 9.9E-41 3.4E-45 313.9 35.6 357 17-408 9-375 (375)
40 3l8a_A METC, putative aminotra 100.0 1E-37 3.5E-42 297.8 23.1 368 4-409 27-420 (421)
41 2w8t_A SPT, serine palmitoyltr 100.0 2.3E-35 7.8E-40 281.9 29.0 338 21-410 49-414 (427)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 1.6E-34 5.4E-39 273.8 26.8 341 19-411 27-396 (399)
43 3dzz_A Putative pyridoxal 5'-p 100.0 6.2E-35 2.1E-39 275.8 22.4 359 16-411 8-389 (391)
44 3fdb_A Beta C-S lyase, putativ 100.0 4.8E-35 1.6E-39 275.3 19.2 349 19-411 6-376 (377)
45 3kax_A Aminotransferase, class 100.0 2.8E-34 9.5E-39 270.6 22.2 356 16-409 3-383 (383)
46 1fc4_A 2-amino-3-ketobutyrate 100.0 3.6E-33 1.2E-37 264.7 26.6 343 18-411 27-397 (401)
47 3a2b_A Serine palmitoyltransfe 100.0 9.4E-33 3.2E-37 261.6 28.9 340 18-411 26-392 (398)
48 1d2f_A MALY protein; aminotran 100.0 1.8E-32 6.3E-37 258.9 27.1 355 17-410 4-388 (390)
49 3kki_A CAI-1 autoinducer synth 100.0 2.9E-33 1E-37 266.0 20.2 334 22-410 45-403 (409)
50 4dq6_A Putative pyridoxal phos 100.0 3E-33 1E-37 264.3 18.7 355 16-409 7-391 (391)
51 1bs0_A Protein (8-amino-7-oxon 100.0 6.4E-32 2.2E-36 254.6 26.6 337 18-407 22-383 (384)
52 1yiz_A Kynurenine aminotransfe 100.0 1.2E-31 4.2E-36 256.4 28.5 351 36-410 37-428 (429)
53 3jtx_A Aminotransferase; NP_28 100.0 5.5E-33 1.9E-37 263.0 16.4 357 5-408 2-395 (396)
54 1c7n_A Cystalysin; transferase 100.0 1.2E-32 4.2E-37 260.8 17.9 357 16-410 4-392 (399)
55 3ftb_A Histidinol-phosphate am 100.0 1E-31 3.4E-36 251.1 22.3 333 24-411 11-361 (361)
56 2zc0_A Alanine glyoxylate tran 100.0 6.3E-31 2.1E-35 249.8 27.1 338 34-410 32-403 (407)
57 2dou_A Probable N-succinyldiam 100.0 5.2E-32 1.8E-36 254.5 19.3 331 33-408 22-375 (376)
58 3aow_A Putative uncharacterize 100.0 3.7E-31 1.3E-35 253.9 25.2 336 35-410 75-444 (448)
59 3b46_A Aminotransferase BNA3; 100.0 2.9E-31 1E-35 254.9 24.3 352 34-407 55-443 (447)
60 3nra_A Aspartate aminotransfer 100.0 4.3E-32 1.5E-36 257.8 17.9 355 21-410 21-404 (407)
61 3euc_A Histidinol-phosphate am 100.0 1.7E-31 5.7E-36 250.2 21.6 326 35-409 29-366 (367)
62 2z61_A Probable aspartate amin 100.0 2.1E-31 7.3E-36 249.7 22.3 320 34-409 27-369 (370)
63 3ly1_A Putative histidinol-pho 100.0 1.3E-30 4.5E-35 242.8 26.3 333 26-410 6-351 (354)
64 1j32_A Aspartate aminotransfer 100.0 2.2E-31 7.6E-36 251.3 20.5 338 33-410 27-386 (388)
65 3b1d_A Betac-S lyase; HET: PLP 100.0 2.5E-34 8.6E-39 271.8 0.0 354 17-409 10-391 (392)
66 3ezs_A Aminotransferase ASPB; 100.0 6.5E-32 2.2E-36 253.8 15.7 328 33-410 21-374 (376)
67 2o1b_A Aminotransferase, class 100.0 2.5E-31 8.6E-36 252.1 19.9 334 34-410 45-402 (404)
68 2x5d_A Probable aminotransfera 100.0 1.7E-31 5.7E-36 254.1 18.2 339 33-410 34-397 (412)
69 1gd9_A Aspartate aminotransfer 100.0 1.1E-30 3.8E-35 246.6 23.3 334 36-410 26-385 (389)
70 3ele_A Amino transferase; RER0 100.0 1.6E-30 5.6E-35 246.1 23.4 330 34-410 33-395 (398)
71 3h14_A Aminotransferase, class 100.0 1E-30 3.4E-35 247.0 21.9 334 33-410 28-381 (391)
72 1o4s_A Aspartate aminotransfer 100.0 8.9E-31 3E-35 247.2 21.2 332 34-410 39-388 (389)
73 3ffh_A Histidinol-phosphate am 100.0 1.3E-30 4.4E-35 243.8 22.0 320 34-408 30-363 (363)
74 1u08_A Hypothetical aminotrans 100.0 3.1E-30 1.1E-34 243.2 24.2 330 36-406 30-385 (386)
75 3fvs_A Kynurenine--oxoglutarat 100.0 2E-29 7E-34 240.5 29.1 357 35-411 27-422 (422)
76 1lc5_A COBD, L-threonine-O-3-p 100.0 3.8E-31 1.3E-35 247.5 16.5 326 32-410 20-359 (364)
77 3dyd_A Tyrosine aminotransfera 100.0 2.5E-30 8.5E-35 247.0 21.4 342 33-410 51-423 (427)
78 1v2d_A Glutamine aminotransfer 100.0 4.7E-30 1.6E-34 241.6 22.9 327 37-410 26-370 (381)
79 2o0r_A RV0858C (N-succinyldiam 100.0 4.2E-30 1.4E-34 244.4 22.8 334 37-410 26-395 (411)
80 1b5p_A Protein (aspartate amin 100.0 4.9E-30 1.7E-34 241.8 22.7 336 34-410 29-384 (385)
81 1vp4_A Aminotransferase, putat 100.0 1.3E-30 4.4E-35 249.0 18.9 340 35-410 42-417 (425)
82 3g0t_A Putative aminotransfera 100.0 8.5E-30 2.9E-34 244.2 24.2 343 27-410 35-436 (437)
83 3cq5_A Histidinol-phosphate am 100.0 2.4E-29 8.3E-34 235.6 26.7 319 39-409 33-366 (369)
84 3fkd_A L-threonine-O-3-phospha 100.0 1.1E-29 3.7E-34 236.3 23.7 324 23-410 2-341 (350)
85 2zyj_A Alpha-aminodipate amino 100.0 1.9E-30 6.6E-35 245.6 18.2 331 35-410 31-392 (397)
86 3e2y_A Kynurenine-oxoglutarate 100.0 2.4E-29 8.1E-34 239.1 24.9 352 35-406 22-408 (410)
87 1xi9_A Putative transaminase; 100.0 2.4E-30 8.2E-35 245.7 17.4 340 33-411 35-403 (406)
88 1iay_A ACC synthase 2, 1-amino 100.0 2.8E-29 9.5E-34 240.0 24.7 340 36-410 36-426 (428)
89 3hdo_A Histidinol-phosphate am 100.0 6.6E-30 2.3E-34 238.7 19.6 321 33-409 23-353 (360)
90 3get_A Histidinol-phosphate am 100.0 1.1E-29 3.8E-34 237.6 20.6 323 35-409 29-365 (365)
91 3piu_A 1-aminocyclopropane-1-c 100.0 1.6E-29 5.4E-34 242.2 21.8 348 30-410 30-431 (435)
92 2x5f_A Aspartate_tyrosine_phen 100.0 1.2E-30 4E-35 249.7 12.9 343 36-410 47-428 (430)
93 3qgu_A LL-diaminopimelate amin 100.0 5.3E-30 1.8E-34 246.5 17.5 339 33-410 66-439 (449)
94 2gb3_A Aspartate aminotransfer 100.0 8.9E-30 3.1E-34 241.9 18.4 330 33-410 40-401 (409)
95 3op7_A Aminotransferase class 100.0 2.3E-29 8E-34 236.3 20.9 313 59-410 46-370 (375)
96 2bwn_A 5-aminolevulinate synth 100.0 1.1E-28 3.8E-33 233.8 25.8 328 34-411 44-400 (401)
97 2q7w_A Aspartate aminotransfer 100.0 8.3E-30 2.9E-34 241.1 17.1 337 34-408 24-396 (396)
98 4f4e_A Aromatic-amino-acid ami 100.0 1E-29 3.4E-34 242.4 16.2 338 35-409 48-420 (420)
99 1ajs_A Aspartate aminotransfer 100.0 8.9E-30 3E-34 242.2 15.5 339 34-411 28-411 (412)
100 3ei9_A LL-diaminopimelate amin 100.0 7.4E-29 2.5E-33 237.3 21.3 340 33-409 53-426 (432)
101 2ay1_A Aroat, aromatic amino a 100.0 8.5E-30 2.9E-34 240.9 14.3 339 34-407 24-392 (394)
102 3fsl_A Aromatic-amino-acid ami 100.0 3.9E-29 1.3E-33 236.6 17.3 336 36-408 26-397 (397)
103 3rq1_A Aminotransferase class 100.0 9.5E-29 3.2E-33 235.6 20.1 337 35-411 37-415 (418)
104 2r2n_A Kynurenine/alpha-aminoa 100.0 6.3E-28 2.1E-32 230.3 25.7 302 72-410 78-423 (425)
105 1fg7_A Histidinol phosphate am 100.0 5.4E-29 1.9E-33 232.0 17.6 312 36-407 29-354 (356)
106 3p1t_A Putative histidinol-pho 100.0 9.4E-28 3.2E-32 221.9 22.9 314 34-409 14-335 (337)
107 1bw0_A TAT, protein (tyrosine 100.0 1.6E-28 5.4E-33 233.9 17.8 344 36-410 33-412 (416)
108 3asa_A LL-diaminopimelate amin 100.0 2.3E-28 7.9E-33 231.5 18.7 329 34-410 31-392 (400)
109 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.2E-28 4.2E-33 230.9 16.3 316 50-411 18-370 (371)
110 1yaa_A Aspartate aminotransfer 100.0 4.2E-28 1.4E-32 230.6 18.8 340 34-411 27-411 (412)
111 3t18_A Aminotransferase class 100.0 7.8E-28 2.7E-32 228.9 20.4 334 35-410 36-409 (413)
112 3if2_A Aminotransferase; YP_26 100.0 4.1E-28 1.4E-32 233.0 17.4 312 74-410 85-439 (444)
113 3f9t_A TDC, L-tyrosine decarbo 100.0 4.4E-27 1.5E-31 222.2 24.0 315 53-409 42-396 (397)
114 1kmj_A Selenocysteine lyase; p 100.0 1.3E-26 4.6E-31 219.7 26.7 328 34-410 20-404 (406)
115 2dr1_A PH1308 protein, 386AA l 100.0 4.1E-27 1.4E-31 221.7 20.9 317 52-410 30-378 (386)
116 1t3i_A Probable cysteine desul 100.0 4.3E-26 1.5E-30 217.2 28.0 330 34-411 25-413 (420)
117 3g7q_A Valine-pyruvate aminotr 100.0 2.5E-27 8.6E-32 225.6 19.3 332 36-410 31-412 (417)
118 3ez1_A Aminotransferase MOCR f 99.9 6.9E-28 2.4E-32 230.0 13.6 338 38-410 27-414 (423)
119 1uu1_A Histidinol-phosphate am 99.9 2.7E-27 9.1E-32 218.8 16.4 308 36-407 19-334 (335)
120 2z9v_A Aspartate aminotransfer 99.9 1.8E-26 6.1E-31 217.9 20.1 319 52-411 19-371 (392)
121 3d6k_A Putative aminotransfera 99.9 3.8E-27 1.3E-31 224.7 15.6 336 38-410 34-417 (422)
122 1qz9_A Kynureninase; kynurenin 99.9 5.2E-26 1.8E-30 216.4 23.4 322 34-410 27-401 (416)
123 1elu_A L-cysteine/L-cystine C- 99.9 8.3E-27 2.8E-31 220.0 17.6 317 50-407 25-388 (390)
124 3kgw_A Alanine-glyoxylate amin 99.9 7E-27 2.4E-31 220.6 16.6 318 53-411 34-388 (393)
125 1vjo_A Alanine--glyoxylate ami 99.9 2.8E-26 9.7E-31 216.6 20.5 315 51-409 43-393 (393)
126 3ppl_A Aspartate aminotransfer 99.9 2.5E-27 8.4E-32 226.4 13.0 296 79-410 81-419 (427)
127 1eg5_A Aminotransferase; PLP-d 99.9 1.4E-25 4.9E-30 210.9 24.5 323 37-411 3-376 (384)
128 3nnk_A Ureidoglycine-glyoxylat 99.9 4.4E-26 1.5E-30 216.5 19.6 317 53-410 24-389 (411)
129 3meb_A Aspartate aminotransfer 99.9 2.1E-26 7.2E-31 221.0 16.8 338 34-411 46-444 (448)
130 1m32_A 2-aminoethylphosphonate 99.9 7.7E-26 2.6E-30 211.3 20.1 327 38-411 5-365 (366)
131 3isl_A Purine catabolism prote 99.9 1.4E-25 4.7E-30 213.5 22.2 297 75-411 43-390 (416)
132 3cai_A Possible aminotransfera 99.9 1.7E-24 5.9E-29 205.2 28.9 323 35-406 26-404 (406)
133 3zrp_A Serine-pyruvate aminotr 99.9 4E-26 1.4E-30 214.7 17.4 316 53-410 13-362 (384)
134 3f6t_A Aspartate aminotransfer 99.9 8.2E-27 2.8E-31 228.0 12.4 344 45-410 108-524 (533)
135 3f0h_A Aminotransferase; RER07 99.9 1.8E-25 6.2E-30 209.8 20.6 318 53-410 30-373 (376)
136 3e9k_A Kynureninase; kynurenin 99.9 5.3E-26 1.8E-30 219.5 17.2 329 48-410 74-460 (465)
137 2yrr_A Aminotransferase, class 99.9 1.2E-25 4.1E-30 209.0 17.6 313 53-410 11-352 (353)
138 4eu1_A Mitochondrial aspartate 99.9 3E-26 1E-30 217.7 13.3 333 36-409 41-409 (409)
139 3k7y_A Aspartate aminotransfer 99.9 3.3E-26 1.1E-30 215.6 12.8 337 36-411 29-405 (405)
140 7aat_A Aspartate aminotransfer 99.9 1.9E-25 6.5E-30 211.5 17.9 329 37-408 29-400 (401)
141 1svv_A Threonine aldolase; str 99.9 3.4E-25 1.2E-29 206.5 19.0 324 38-411 15-358 (359)
142 2huf_A Alanine glyoxylate amin 99.9 2.8E-25 9.5E-30 209.8 18.5 314 53-410 30-382 (393)
143 3lvm_A Cysteine desulfurase; s 99.9 8.3E-25 2.8E-29 208.6 21.5 325 34-410 21-398 (423)
144 3tcm_A Alanine aminotransferas 99.9 5.9E-25 2E-29 213.5 20.3 335 53-410 107-493 (500)
145 1iug_A Putative aspartate amin 99.9 2.4E-25 8.3E-30 206.9 16.9 309 53-410 12-347 (352)
146 2dkj_A Serine hydroxymethyltra 99.9 8.1E-25 2.8E-29 207.6 20.1 325 36-410 23-387 (407)
147 4eb5_A Probable cysteine desul 99.9 2E-24 6.8E-29 203.0 22.2 321 38-410 3-372 (382)
148 4hvk_A Probable cysteine desul 99.9 3.1E-24 1.1E-28 201.6 22.3 313 52-410 11-372 (382)
149 1v72_A Aldolase; PLP-dependent 99.9 3.5E-24 1.2E-28 199.4 21.8 321 36-410 7-352 (356)
150 1jg8_A L-ALLO-threonine aldola 99.9 1.4E-24 4.9E-29 201.4 18.7 330 36-410 3-345 (347)
151 3ke3_A Putative serine-pyruvat 99.9 1.6E-24 5.4E-29 203.5 18.9 331 30-410 6-375 (379)
152 3ihj_A Alanine aminotransferas 99.9 2.6E-24 9E-29 208.6 19.1 332 54-410 103-492 (498)
153 1ax4_A Tryptophanase; tryptoph 99.9 1.8E-24 6E-29 209.1 17.5 352 34-410 41-440 (467)
154 2ch1_A 3-hydroxykynurenine tra 99.9 3.1E-24 1.1E-28 202.8 18.2 314 53-410 29-382 (396)
155 3mad_A Sphingosine-1-phosphate 99.9 6.7E-24 2.3E-28 207.2 19.7 318 53-410 108-468 (514)
156 3a9z_A Selenocysteine lyase; P 99.9 7.3E-23 2.5E-27 195.7 23.5 331 34-410 17-427 (432)
157 3vax_A Putative uncharacterize 99.9 4E-24 1.4E-28 202.3 14.5 326 32-410 17-399 (400)
158 2zy4_A L-aspartate beta-decarb 99.9 1.5E-23 5.1E-28 205.0 18.9 345 38-410 106-521 (546)
159 2oga_A Transaminase; PLP-depen 99.9 1.2E-23 4.1E-28 199.0 17.4 318 36-411 30-396 (399)
160 2vi8_A Serine hydroxymethyltra 99.9 4.5E-23 1.5E-27 195.4 21.0 323 36-410 24-386 (405)
161 3ecd_A Serine hydroxymethyltra 99.9 1.3E-22 4.5E-27 193.4 24.0 323 38-410 34-396 (425)
162 2ez2_A Beta-tyrosinase, tyrosi 99.9 2.3E-23 7.9E-28 200.6 18.6 344 34-410 40-430 (456)
163 2rfv_A Methionine gamma-lyase; 99.9 6.4E-23 2.2E-27 193.9 21.0 286 73-407 61-396 (398)
164 4h51_A Aspartate aminotransfer 99.9 3.6E-23 1.2E-27 194.9 19.1 342 34-411 42-417 (420)
165 3lws_A Aromatic amino acid bet 99.9 7.1E-24 2.4E-28 197.5 14.2 326 37-408 4-356 (357)
166 2bkw_A Alanine-glyoxylate amin 99.9 2.8E-23 9.5E-28 195.4 18.0 313 53-411 16-384 (385)
167 2oqx_A Tryptophanase; lyase, p 99.9 3.4E-23 1.2E-27 200.0 18.1 348 34-410 39-441 (467)
168 3qhx_A Cystathionine gamma-syn 99.9 8E-23 2.7E-27 192.5 20.0 282 73-408 63-391 (392)
169 3pj0_A LMO0305 protein; struct 99.9 1.2E-23 4.2E-28 196.1 14.3 315 48-407 23-358 (359)
170 1mdo_A ARNB aminotransferase; 99.9 1.3E-22 4.6E-27 191.4 20.8 311 53-410 18-385 (393)
171 3n0l_A Serine hydroxymethyltra 99.9 1.5E-22 5.3E-27 192.5 20.9 313 53-410 37-388 (417)
172 2aeu_A Hypothetical protein MJ 99.9 1.9E-22 6.6E-27 188.8 19.5 320 34-410 25-370 (374)
173 3mc6_A Sphingosine-1-phosphate 99.9 1E-22 3.6E-27 198.1 18.3 320 53-410 76-436 (497)
174 3ndn_A O-succinylhomoserine su 99.9 7.4E-23 2.5E-27 193.6 16.4 288 73-408 78-413 (414)
175 1b9h_A AHBA synthase, protein 99.9 1.3E-21 4.5E-26 184.2 24.9 310 54-410 16-387 (388)
176 1cs1_A CGS, protein (cystathio 99.9 4.1E-22 1.4E-26 187.6 21.0 281 73-407 49-383 (386)
177 1wyu_B Glycine dehydrogenase s 99.9 8.6E-22 2.9E-26 190.2 23.3 315 51-409 76-439 (474)
178 3h7f_A Serine hydroxymethyltra 99.9 6.8E-22 2.3E-26 189.6 21.9 317 53-410 57-413 (447)
179 2fnu_A Aminotransferase; prote 99.9 7.1E-22 2.4E-26 185.2 20.3 308 53-410 11-371 (375)
180 1o69_A Aminotransferase; struc 99.9 1.8E-21 6.3E-26 183.6 23.1 322 53-409 10-385 (394)
181 1ibj_A CBL, cystathionine beta 99.9 1.1E-22 3.8E-27 194.8 14.7 286 74-410 131-461 (464)
182 2po3_A 4-dehydrase; external a 99.9 2.4E-21 8.3E-26 184.6 23.1 307 53-410 30-385 (424)
183 1e5e_A MGL, methionine gamma-l 99.9 2E-21 6.7E-26 183.7 22.2 283 75-410 61-394 (404)
184 3acz_A Methionine gamma-lyase; 99.9 1.6E-21 5.6E-26 183.5 21.5 282 73-411 56-389 (389)
185 3gbx_A Serine hydroxymethyltra 99.9 6.9E-22 2.4E-26 188.1 19.0 312 53-410 42-395 (420)
186 2qma_A Diaminobutyrate-pyruvat 99.9 4E-21 1.4E-25 186.7 24.4 328 53-411 112-496 (497)
187 1gc0_A Methionine gamma-lyase; 99.9 3E-21 1E-25 182.4 22.0 286 73-407 62-397 (398)
188 2cb1_A O-acetyl homoserine sul 99.9 7.8E-21 2.7E-25 180.3 24.6 301 48-406 28-411 (412)
189 3nmy_A Xometc, cystathionine g 99.9 7.6E-22 2.6E-26 185.8 17.0 258 73-381 64-344 (400)
190 3frk_A QDTB; aminotransferase, 99.9 6.1E-22 2.1E-26 185.6 15.7 306 54-409 16-366 (373)
191 3ffr_A Phosphoserine aminotran 99.9 9.2E-22 3.2E-26 183.4 16.8 304 53-408 15-361 (362)
192 3nyt_A Aminotransferase WBPE; 99.9 1.7E-21 5.7E-26 182.2 17.6 301 54-406 15-359 (367)
193 3uwc_A Nucleotide-sugar aminot 99.9 2.2E-21 7.4E-26 181.8 18.0 305 57-410 21-370 (374)
194 1pff_A Methionine gamma-lyase; 99.9 6E-21 2.1E-25 175.8 20.1 275 81-407 3-330 (331)
195 3dr4_A Putative perosamine syn 99.9 1.7E-21 5.7E-26 183.8 16.1 305 54-408 35-390 (391)
196 1qgn_A Protein (cystathionine 99.9 1.1E-20 3.8E-25 179.6 20.7 285 74-411 112-445 (445)
197 2ctz_A O-acetyl-L-homoserine s 99.8 1.4E-20 5E-25 178.8 17.0 281 74-408 56-420 (421)
198 2okj_A Glutamate decarboxylase 99.8 3.2E-19 1.1E-23 173.6 26.6 314 75-411 131-502 (504)
199 2jis_A Cysteine sulfinic acid 99.8 4.1E-19 1.4E-23 173.2 26.2 311 75-411 147-515 (515)
200 2dgk_A GAD-beta, GADB, glutama 99.8 7E-20 2.4E-24 175.9 20.5 322 53-410 54-433 (452)
201 2c81_A Glutamine-2-deoxy-scyll 99.8 1.1E-19 3.6E-24 173.0 21.0 314 53-411 14-414 (418)
202 2z67_A O-phosphoseryl-tRNA(SEC 99.8 7.6E-20 2.6E-24 175.6 20.2 297 76-408 133-455 (456)
203 1n8p_A Cystathionine gamma-lya 99.8 1E-19 3.5E-24 171.2 20.1 283 73-408 52-392 (393)
204 3bwn_A AT1G70560, L-tryptophan 99.8 5.5E-21 1.9E-25 180.0 11.4 276 75-409 71-385 (391)
205 1w23_A Phosphoserine aminotran 99.8 2.5E-20 8.4E-25 173.7 14.3 308 52-410 13-359 (360)
206 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 3.4E-19 1.2E-23 170.4 22.4 308 54-409 42-434 (437)
207 2c0r_A PSAT, phosphoserine ami 99.8 2.3E-19 8E-24 167.2 20.7 305 53-410 15-360 (362)
208 1rv3_A Serine hydroxymethyltra 99.8 8.5E-20 2.9E-24 176.4 17.2 321 38-410 46-430 (483)
209 3b8x_A WBDK, pyridoxamine 5-ph 99.8 8.4E-19 2.9E-23 165.2 22.8 303 53-404 13-389 (390)
210 3ri6_A O-acetylhomoserine sulf 99.8 2.1E-19 7.2E-24 170.3 18.2 284 73-408 79-429 (430)
211 2a7v_A Serine hydroxymethyltra 99.8 9.1E-19 3.1E-23 167.7 21.9 313 53-409 66-439 (490)
212 3cog_A Cystathionine gamma-lya 99.8 1.3E-19 4.4E-24 171.1 15.6 214 73-323 64-283 (403)
213 4e1o_A HDC, histidine decarbox 99.8 5.9E-18 2E-22 163.5 27.0 302 75-410 117-477 (481)
214 3ju7_A Putative PLP-dependent 99.8 1.2E-18 4E-23 163.0 20.5 314 53-409 14-373 (377)
215 3vp6_A Glutamate decarboxylase 99.8 1.7E-17 5.6E-22 161.3 28.8 314 75-410 134-504 (511)
216 2x3l_A ORN/Lys/Arg decarboxyla 99.8 4.2E-20 1.4E-24 176.7 10.2 287 74-410 55-352 (446)
217 3hbx_A GAD 1, glutamate decarb 99.8 1.7E-18 5.7E-23 168.1 21.1 321 53-410 68-443 (502)
218 3k40_A Aromatic-L-amino-acid d 99.8 9.3E-18 3.2E-22 161.7 25.6 301 75-410 112-470 (475)
219 3ht4_A Aluminum resistance pro 99.8 2.3E-18 8E-23 163.2 20.0 289 53-375 36-345 (431)
220 2hox_A ALLIIN lyase 1; cystein 99.8 2.3E-19 7.8E-24 170.7 12.5 318 35-410 55-424 (427)
221 1js3_A DDC;, DOPA decarboxylas 99.8 4.9E-17 1.7E-21 157.6 28.6 319 57-410 90-473 (486)
222 2fq6_A Cystathionine beta-lyas 99.8 2.2E-18 7.4E-23 162.8 18.3 217 74-324 80-300 (415)
223 3jzl_A Putative cystathionine 99.8 2.3E-17 7.9E-22 155.0 22.2 276 53-375 30-339 (409)
224 2fyf_A PSAT, phosphoserine ami 99.8 4.7E-18 1.6E-22 160.5 16.7 302 53-411 51-398 (398)
225 3hvy_A Cystathionine beta-lyas 99.8 5.5E-17 1.9E-21 153.0 20.5 282 53-374 45-355 (427)
226 3i16_A Aluminum resistance pro 99.7 9.2E-17 3.1E-21 151.4 21.1 281 54-375 45-356 (427)
227 1wyu_A Glycine dehydrogenase ( 99.7 1.6E-16 5.4E-21 151.9 15.1 310 48-408 72-437 (438)
228 3e77_A Phosphoserine aminotran 99.7 1.1E-16 3.7E-21 148.2 9.8 317 49-410 20-374 (377)
229 1c4k_A Protein (ornithine deca 99.7 1.4E-15 4.7E-20 152.1 17.4 314 74-409 171-564 (730)
230 2vyc_A Biodegradative arginine 99.6 2.7E-15 9.4E-20 151.3 14.2 313 75-409 204-603 (755)
231 3hl2_A O-phosphoseryl-tRNA(SEC 99.6 2.9E-14 9.8E-19 131.7 18.0 294 86-410 126-460 (501)
232 3qm2_A Phosphoserine aminotran 99.6 1.6E-15 5.6E-20 141.1 8.0 308 53-410 38-384 (386)
233 3m5u_A Phosphoserine aminotran 99.6 6.3E-14 2.2E-18 129.2 16.8 304 53-410 16-359 (361)
234 3n75_A LDC, lysine decarboxyla 99.6 2.4E-14 8.2E-19 142.0 13.1 308 75-408 194-557 (715)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 6.5E-13 2.2E-17 124.3 20.6 306 76-410 98-442 (450)
236 3ou5_A Serine hydroxymethyltra 99.2 6.9E-10 2.4E-14 102.3 17.9 312 53-409 66-439 (490)
237 1vhx_A Putative holliday junct 74.1 6.2 0.00021 30.6 5.6 57 169-227 43-101 (150)
238 1x7f_A Outer surface protein; 62.1 17 0.00058 32.9 6.6 58 204-269 74-132 (385)
239 1tks_A 3,4-dihydroxy-2-butanon 58.9 9.1 0.00031 31.1 3.8 37 182-222 158-194 (204)
240 3bzy_B ESCU; auto cleavage pro 53.1 8.2 0.00028 26.4 2.3 22 206-227 29-50 (83)
241 3mio_A DHBP synthase, 3,4-dihy 49.9 20 0.0007 29.1 4.5 37 182-222 157-194 (206)
242 1snn_A DHBP synthase, 3,4-dihy 47.5 21 0.00072 29.5 4.3 37 181-222 176-212 (227)
243 3t7y_A YOP proteins translocat 46.9 12 0.00039 26.5 2.3 24 204-227 42-65 (97)
244 2vt1_B Surface presentation of 46.3 12 0.00041 26.2 2.3 23 205-227 28-50 (93)
245 3c01_E Surface presentation of 45.0 13 0.00044 26.3 2.3 23 205-227 28-50 (98)
246 1iv0_A Hypothetical protein; r 43.2 27 0.00092 24.6 3.9 55 169-227 39-96 (98)
247 2p0o_A Hypothetical protein DU 41.5 30 0.001 31.1 4.8 58 203-268 49-107 (372)
248 1g57_A DHBP synthase, 3,4-dihy 39.8 33 0.0011 28.2 4.3 35 182-221 166-200 (217)
249 3ecs_A Translation initiation 37.5 1.7E+02 0.0058 25.6 8.8 118 79-223 109-229 (315)
250 3r0u_A Enzyme of enolase super 35.7 1.2E+02 0.0041 27.3 8.0 147 53-223 142-296 (379)
251 3o63_A Probable thiamine-phosp 34.2 30 0.001 29.2 3.4 51 170-224 46-103 (243)
252 1k4i_A 3,4-dihydroxy-2-butanon 33.7 36 0.0012 28.2 3.7 37 182-222 166-212 (233)
253 3b1s_B Flagellar biosynthetic 39.4 9 0.00031 26.4 0.0 22 206-227 29-50 (87)
254 3jva_A Dipeptide epimerase; en 33.1 2.6E+02 0.0087 24.8 9.7 147 53-224 139-292 (354)
255 1k7c_A Rhamnogalacturonan acet 32.8 1.1E+02 0.0038 25.0 6.9 50 170-221 114-167 (233)
256 2jli_A YSCU, YOP proteins tran 31.1 28 0.00095 25.8 2.3 23 205-227 72-94 (123)
257 1vb5_A Translation initiation 30.3 1.8E+02 0.0062 24.8 7.8 36 185-222 181-216 (276)
258 3bzs_A ESCU; auto cleavage pro 29.6 30 0.001 26.1 2.3 23 205-227 82-104 (137)
259 3mag_A VP39; methylated adenin 29.2 2.3E+02 0.008 24.5 8.0 53 170-223 75-138 (307)
260 3pzt_A Endoglucanase; alpha/be 29.0 38 0.0013 29.9 3.4 53 169-224 70-125 (327)
261 3ghf_A Septum site-determining 28.2 1.7E+02 0.0059 21.2 6.5 53 161-221 18-78 (120)
262 3q45_A Mandelate racemase/muco 27.8 1.5E+02 0.0052 26.4 7.3 47 169-223 246-292 (368)
263 7a3h_A Endoglucanase; hydrolas 27.7 42 0.0014 29.2 3.4 55 169-226 45-102 (303)
264 2jlj_A YSCU, YOP proteins tran 27.7 34 0.0011 26.1 2.3 22 206-227 82-103 (144)
265 3u9i_A Mandelate racemase/muco 26.1 3.6E+02 0.012 24.2 9.7 47 169-224 281-327 (393)
266 2lbw_A H/ACA ribonucleoprotein 26.0 1.2E+02 0.0041 22.1 5.2 45 170-223 25-69 (121)
267 2xw6_A MGS, methylglyoxal synt 25.8 1.6E+02 0.0055 22.0 5.8 47 172-224 65-112 (134)
268 1tvn_A Cellulase, endoglucanas 25.4 49 0.0017 28.5 3.4 22 204-225 79-100 (293)
269 1t9k_A Probable methylthioribo 25.2 2E+02 0.0068 25.6 7.3 50 173-226 219-271 (347)
270 1nu0_A Hypothetical protein YQ 24.7 72 0.0024 24.1 3.7 56 169-227 41-99 (138)
271 3s5s_A Mandelate racemase/muco 24.5 3.9E+02 0.013 24.0 9.5 147 53-224 144-298 (389)
272 3tj4_A Mandelate racemase; eno 24.5 3.3E+02 0.011 24.2 8.9 145 53-221 151-303 (372)
273 3ik4_A Mandelate racemase/muco 24.3 3.7E+02 0.013 23.8 10.2 146 53-224 143-297 (365)
274 3v7e_A Ribosome-associated pro 24.3 64 0.0022 21.7 3.1 47 170-226 16-62 (82)
275 3p8k_A Hydrolase, carbon-nitro 24.1 1E+02 0.0035 26.3 5.2 53 170-222 39-100 (281)
276 3jug_A Beta-mannanase; TIM-bar 23.9 95 0.0033 27.6 5.0 24 202-225 85-108 (345)
277 3b0z_B Flagellar biosynthetic 29.5 17 0.00057 26.5 0.0 22 206-227 29-50 (114)
278 3ozy_A Putative mandelate race 23.7 2.6E+02 0.0088 25.2 8.0 47 169-223 258-304 (389)
279 3vup_A Beta-1,4-mannanase; TIM 23.5 54 0.0018 28.4 3.4 21 206-226 92-112 (351)
280 2aif_A Ribosomal protein L7A; 23.3 2.3E+02 0.0079 21.0 6.7 44 170-222 46-89 (135)
281 1bqc_A Protein (beta-mannanase 23.3 56 0.0019 28.2 3.4 22 203-224 64-85 (302)
282 1vjz_A Endoglucanase; TM1752, 23.1 1.7E+02 0.0059 25.5 6.7 24 203-226 76-99 (341)
283 1egz_A Endoglucanase Z, EGZ, C 23.0 57 0.002 27.9 3.4 54 169-224 40-97 (291)
284 3n9k_A Glucan 1,3-beta-glucosi 22.9 56 0.0019 29.8 3.4 23 203-225 112-134 (399)
285 4hty_A Cellulase; (alpha/beta) 22.9 56 0.0019 29.2 3.4 22 204-225 121-142 (359)
286 4gqr_A Pancreatic alpha-amylas 22.6 61 0.0021 30.2 3.7 25 203-227 76-100 (496)
287 1g01_A Endoglucanase; alpha/be 22.4 58 0.002 29.1 3.4 23 204-226 90-112 (364)
288 3ddm_A Putative mandelate race 21.9 2.1E+02 0.0071 25.9 7.0 46 169-222 262-307 (392)
289 2whl_A Beta-mannanase, baman5; 21.2 55 0.0019 28.2 2.9 23 202-224 62-84 (294)
290 2ale_A SNU13, NHP2/L7AE family 20.9 1.5E+02 0.0052 22.1 4.8 45 170-223 37-81 (134)
291 3a11_A Translation initiation 20.9 2.7E+02 0.0093 24.5 7.3 31 191-223 219-249 (338)
292 2cks_A Endoglucanase E-5; carb 20.6 57 0.002 28.3 2.9 21 204-224 80-100 (306)
293 2k4m_A TR8_protein, UPF0146 pr 20.5 63 0.0021 24.8 2.6 24 200-223 97-120 (153)
294 1h4p_A Glucan 1,3-beta-glucosi 20.3 68 0.0023 29.3 3.4 24 203-226 113-136 (408)
295 1qnr_A Endo-1,4-B-D-mannanase; 20.3 69 0.0023 28.1 3.4 22 204-225 90-111 (344)
296 3dc7_A Putative uncharacterize 20.2 1.3E+02 0.0043 24.4 4.9 19 203-221 160-178 (232)
297 1g94_A Alpha-amylase; beta-alp 20.1 51 0.0018 30.5 2.5 25 203-227 64-88 (448)
No 1
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=3.4e-68 Score=503.17 Aligned_cols=391 Identities=34% Similarity=0.563 Sum_probs=353.9
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|++|++|.|.++ |+++.+++|+++||.|||+|+||.++||++.+||+||+|++|+.++++++..+..+.....+
T Consensus 55 ~pgg~~~~~~~~~~~---P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~ 131 (454)
T 4ao9_A 55 MPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGR 131 (454)
T ss_dssp SGGGCSSGGGCCSSC---CCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHH
T ss_pred CCCCCCCCccccCCC---CccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHH
Confidence 799999999999865 99999999999999999999999999999999999999999999999998777777788899
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.+.+.+++.+++.|++||+||++.||++++.++++.+||.++++|||.+..+....+. .....
T Consensus 132 lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~--------------~~~~~ 197 (454)
T 4ao9_A 132 LARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP--------------TTVPF 197 (454)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT--------------TSCCS
T ss_pred HHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC--------------ccCCC
Confidence 9999999999999999999999999999999999999999999999999987654332211 11123
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
+...+|+||++.+++.++++.+++++||+||+++++|.+.++++|+++|+++|++||++||+|||++| |+|.+++.+++
T Consensus 198 ~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~~~a~e~~ 276 (454)
T 4ao9_A 198 DFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAPHGLANKL 276 (454)
T ss_dssp EEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGSTTCHHHHH
T ss_pred CcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCccccchhcc
Confidence 56778999999999999988789999999999999999999999999999999999999999999998 89999999999
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcC-CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
|+.||++|++|+++||+|+|++.+++++++.+.+ ....++++|+++||+++++++++|+.++++++.++++++++++++
T Consensus 277 gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~ 356 (454)
T 4ao9_A 277 GIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRA 356 (454)
T ss_dssp TCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 345678899999999999999999999888999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
+|+++..+++.+.++++.|+++.+++.+.+..++......+......+...|+++||++.|.+ .+.+++.+|++|||+
T Consensus 357 ~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~--~~~~s~~~T~~dId~ 434 (454)
T 4ao9_A 357 RLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG--FVVLSLPLTDADIDR 434 (454)
T ss_dssp HHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--EEECCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--CEEEeCCCCHHHHHH
Confidence 999999999999999999999999998777777666665666677888999999999999876 356678899999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
++++|++++.++
T Consensus 435 ~l~al~~~l~~~ 446 (454)
T 4ao9_A 435 YVAAIGSFIGGH 446 (454)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
No 2
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=9.3e-62 Score=461.65 Aligned_cols=384 Identities=24% Similarity=0.344 Sum_probs=322.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC--CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP--SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~--~~ 92 (411)
.|+++.+++|+++||.|||+|+||.++++++++||+||++.+|+.++++++.+ +..+.+...+++++|.+..+ ..
T Consensus 46 ~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~ 125 (456)
T 4atq_A 46 VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHA 125 (456)
T ss_dssp CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSC
T ss_pred CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCC
Confidence 59999999999999999999999999999999999999999999999998542 33457778899999999997 47
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceee---cCC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT---APF 167 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~---~~~ 167 (411)
++++|++||+||++.||++++.++++.+||.+.++|||.+..++...+... +.... +...++...+...... ...
T Consensus 126 ~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~ 205 (456)
T 4atq_A 126 KRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEI 205 (456)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTC
T ss_pred cEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcc
Confidence 899999999999999999999999999999999999999999988877642 22111 1111111000000000 111
Q ss_pred CCHHHHHHHHHc-----CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccC
Q 015230 168 NDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFG 241 (411)
Q Consensus 168 ~d~~~l~~~~~~-----~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~ 241 (411)
++.+.+++.++. .++++++||+||+++++|.+.++++|+++|+++|++||++||+|||++|| |+|.++++++++
T Consensus 206 ~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~g 285 (456)
T 4atq_A 206 TGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG 285 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT
T ss_pred cHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccC
Confidence 234444443332 34689999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321 (411)
Q Consensus 242 ~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 321 (411)
+.||++|++|+++||+|+|.+.+++++++.+. +..+++||+++|++|++++++++.++++++.+++++..++++++|
T Consensus 286 v~PDivt~gK~lggg~P~~av~~~~~i~~~~~---~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L 362 (456)
T 4atq_A 286 VVPDIITMAKGIAGGLPLSAITGRADLLDAVH---PGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKL 362 (456)
T ss_dssp CCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhhhcccCcCCceeeEecHHHHhccc---ccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876 455888999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCC
Q 015230 322 IDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAH 392 (411)
Q Consensus 322 ~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~ 392 (411)
+++..++ +.+.++++.|+++.+++.++... .++...+.++.+.++++|+++.+.+. +.+++ |+++
T Consensus 363 ~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~------~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~i 436 (456)
T 4atq_A 363 RELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSK------EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVI 436 (456)
T ss_dssp HHHHHHCC-----CEEEEEEETTEEEEEEBCTTSC------CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTC
T ss_pred HHHHHhcccccCCceEEeeecceEEEEEEecCCCC------CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCC
Confidence 9998775 56788999999999999764322 25566778899999999999987653 44555 7899
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
|++++|+++++|+++++.
T Consensus 437 t~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 437 SDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 3
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=1.2e-60 Score=457.59 Aligned_cols=411 Identities=54% Similarity=0.964 Sum_probs=349.9
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|.|+++++|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~ 97 (429)
T 4e77_A 18 IPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVK 97 (429)
T ss_dssp SGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHH
T ss_pred cCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 68999999999988878899999999999999999999999999999999999999999999999987666778899999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++|||.+..++...+.+......+...+++.....
T Consensus 98 la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (429)
T 4e77_A 98 MAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAK 177 (429)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGT
T ss_pred HHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCC
Confidence 99999999988899999999999999999998888899999999999999988776655544333333444444444455
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||++|..+..+.+
T Consensus 178 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~ 257 (429)
T 4e77_A 178 HTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYY 257 (429)
T ss_dssp TEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHT
T ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhc
Confidence 67888999999999999876668999999999999999999999999999999999999999999999977777778889
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.......+++|++.++++++++.++++.++++++.++++++.+++++.
T Consensus 258 ~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~ 337 (429)
T 4e77_A 258 HVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATG 337 (429)
T ss_dssp TCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988754445677899999999999999999987789999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecC-CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
|+++...++....+++.|+++++++.+. ...++.....++.....++.+.|.++||++.+++.+.+++++.+|++++++
T Consensus 338 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~e~i~~ 417 (429)
T 4e77_A 338 LRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQK 417 (429)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCCHHHHHH
T ss_pred HHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCCEEEeccCCHHHHHH
Confidence 9998877788778889999999999754 244554445556667788999999999999999877888899999999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
++++|+++++++
T Consensus 418 ~l~~l~~~l~~~ 429 (429)
T 4e77_A 418 TVNAARRCFAKL 429 (429)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
No 4
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=7.7e-61 Score=459.68 Aligned_cols=410 Identities=48% Similarity=0.896 Sum_probs=354.5
Q ss_pred CCCCccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHH
Q 015230 1 MPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLEN 79 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~ 79 (411)
+|.|+++++|.|...+ ..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 98 (434)
T 3l44_A 19 IVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEV 98 (434)
T ss_dssp BGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHH
T ss_pred CCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHH
Confidence 5899999999998765 679999999999999999999999999999999999999999999999998766678889999
Q ss_pred HHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCC
Q 015230 80 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT 159 (411)
Q Consensus 80 ~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (411)
++++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++....
T Consensus 99 ~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 178 (434)
T 3l44_A 99 KFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIA 178 (434)
T ss_dssp HHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCC
Confidence 99999999998889999999999999999999888888999999999999999888877776554444444444433333
Q ss_pred CceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccc
Q 015230 160 YETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239 (411)
Q Consensus 160 ~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~ 239 (411)
..+..++++|+++++++++++++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++|..+..++
T Consensus 179 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~ 258 (434)
T 3l44_A 179 QEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDL 258 (434)
T ss_dssp TTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHH
T ss_pred CceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHH
Confidence 46788899999999999987556899999999999999999999999999999999999999999999997777777888
Q ss_pred cCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+++.||++||||++++|+|+|++++++++++.+.+.....+++|++.++++++++.++++.+++++++++++++.+++++
T Consensus 259 ~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 338 (434)
T 3l44_A 259 LGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEK 338 (434)
T ss_dssp HTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998875545667789999999999999999988778999999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
.|+++...++....+++.|+++++++.+....++.....++.....++.+.|.++||++.+++.+.+|+++.+|++++++
T Consensus 339 ~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~~~~t~e~i~~ 418 (434)
T 3l44_A 339 GILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEY 418 (434)
T ss_dssp HHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTTCCEECCTTCCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCCCcEEEecccCHHHHHH
Confidence 99998877787778889999999999654443332223344556678999999999999999877889999999999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|++++++
T Consensus 419 ~l~~l~~~l~~ 429 (434)
T 3l44_A 419 TIEAVGRAFAA 429 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 5
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=5.6e-61 Score=459.72 Aligned_cols=410 Identities=58% Similarity=0.983 Sum_probs=358.3
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++.+|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++..++++++...+
T Consensus 18 ~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~ 97 (429)
T 3k28_A 18 MPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENK 97 (429)
T ss_dssp SGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHH
T ss_pred cCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHH
Confidence 69999999999998777899999999999999999999999999999999999999999999999987666778899999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 98 l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 177 (429)
T 3k28_A 98 LAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAK 177 (429)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccC
Confidence 99999999988899999999999999999998888889999999999999998888777765554444444444332334
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++|..+..+++
T Consensus 178 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~ 257 (429)
T 3k28_A 178 NTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYY 257 (429)
T ss_dssp TEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHh
Confidence 67788999999999999875568999999999999999999999999999999999999999999999866777777888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.+.....+++|++.++++++++.++++.++ ++++++++++.+++++.
T Consensus 258 ~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~ 336 (429)
T 3k28_A 258 GVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAG 336 (429)
T ss_dssp TCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999899999999999999988754555677899999999999999998765 77889999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++...++....+++.|+++++++.+.+..++.....++.....++.+.|.++||++.+++...+|+++.+|+++++++
T Consensus 337 L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~~~~t~e~i~~~ 416 (429)
T 3k28_A 337 LRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEAT 416 (429)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEECCCCHHHHHHH
Confidence 99988778888888999999999987655555554455566677889999999999999987778899999999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|+++++++
T Consensus 417 l~~l~~~l~~~ 427 (429)
T 3k28_A 417 IAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 6
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=3.6e-61 Score=459.17 Aligned_cols=389 Identities=17% Similarity=0.224 Sum_probs=320.9
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC----CCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF----GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~----~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+|+||.|||+|+||.+++|++++||+||++.+|+.++++++..+ +.+++...+++++|.+..| +.
T Consensus 49 ~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~ 128 (473)
T 4e3q_A 49 GTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDS 128 (473)
T ss_dssp CCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSS
T ss_pred CCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCc
Confidence 499999999999999999999999999999999999999999999999985432 3357788899999999998 78
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|+|++||+||++.|||+++.+ +++.+||.+.++|||.+..++..++........+...+.........+...
T Consensus 129 ~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~ 208 (473)
T 4e3q_A 129 GRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYG 208 (473)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHS
T ss_pred cEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccc
Confidence 99999999999999999999865 457889999999999999999888864333222222222111111111111
Q ss_pred CC----------CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 167 FN----------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 167 ~~----------d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
.. ..+++++.+.+ .++++++||+||+++++|++.++++|+++|+++|++||++||+|||++|| |+|.+
T Consensus 209 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~ 288 (473)
T 4e3q_A 209 EEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNT 288 (473)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccch
Confidence 10 13455555554 45689999999999999999999999999999999999999999999999 99999
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC----CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
++.+++++.||++|++|+++|| +|+|.+++++++.+.+.. .....+++||++||++|+++++.++.++++++.++
T Consensus 289 fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~ 368 (473)
T 4e3q_A 289 WGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 368 (473)
T ss_dssp CHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred hHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHH
Confidence 9999999999999999999987 899999999999877642 23456889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
+++++.+++++|+++.. .+.+.++++.|+++.+++..+..... ...+......++.+.++++|+++.+.+ +.+++
T Consensus 369 ~~~~g~~l~~~L~~l~~-~~~v~~vRG~Gl~~gielv~~~~~~~--~~~~~~~~~~~~~~~~~~~Gll~~~~g-~~i~l~ 444 (473)
T 4e3q_A 369 VRRLAPRFEERLKHIAE-RPNIGEYRGIGFMWALEAVKDKASKT--PFDGNLSVSERIANTCTDLGLICRPLG-QSVVLC 444 (473)
T ss_dssp HHHHHHHHHHHHHHHTT-STTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECEEET-TEEEEC
T ss_pred HHHHHHHHHHHHHHHhc-CCCeeEEeecceEEEEEEecCccccc--cccccHHHHHHHHHHHHHCCcEEEecC-CEEEEe
Confidence 99999999999999854 46788999999999999865322110 011233456789999999999999876 45554
Q ss_pred -ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 -SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+++|++++|+++++|++++++
T Consensus 445 PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 445 PPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998876
No 7
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=3.7e-60 Score=453.99 Aligned_cols=411 Identities=73% Similarity=1.231 Sum_probs=361.4
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|.|+++.+|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 96 (427)
T 3fq8_A 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENV 96 (427)
T ss_dssp SGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHH
T ss_pred cCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHH
Confidence 68999999999987777899999999999999999999999999999999999999999999999987666678999999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 97 la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (427)
T 3fq8_A 97 LAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTA 176 (427)
T ss_dssp HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccC
Confidence 99999999987899999999999999999998888889999999999999988887776665544444545555433344
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|+++|+++++|.+.++++|+++|+++|++||++||+||+|+||++|..+..+.+
T Consensus 177 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~ 256 (427)
T 3fq8_A 177 NTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKF 256 (427)
T ss_dssp TEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHT
T ss_pred ceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhc
Confidence 57788999999999999987678999999999999999999999999999999999999999999999966777777888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.+.....+++|+++++++++++.++++.++++++.++++++.+++++.
T Consensus 257 ~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~ 336 (427)
T 3fq8_A 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDG 336 (427)
T ss_dssp TCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred CCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765555677899999999999999999887789999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++...++....+++.|+++++++.+....++.....++.....++.+.|.++||++.+++.+.+++++.+|+++++++
T Consensus 337 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r~~~~~~~t~e~i~~~ 416 (427)
T 3fq8_A 337 LLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDAT 416 (427)
T ss_dssp HHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCCHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCCEEeeCcCCHHHHHHH
Confidence 99988777777778889999999986654443333344555667789999999999999988777888999999999999
Q ss_pred HHHHHHHHHhC
Q 015230 401 ITAAEKVLRQI 411 (411)
Q Consensus 401 i~~l~~~~~~~ 411 (411)
+++|+++++++
T Consensus 417 l~~l~~~l~~~ 427 (427)
T 3fq8_A 417 LAAARTVMSAL 427 (427)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998864
No 8
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-56 Score=428.21 Aligned_cols=407 Identities=55% Similarity=0.946 Sum_probs=337.3
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++++|.|...+..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 96 (424)
T 2e7u_A 17 IPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVA 96 (424)
T ss_dssp SGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHH
T ss_pred cCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 68999999999976666799999999999999999999999999999999999999999999999986556778889999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 97 l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 176 (424)
T 2e7u_A 97 LAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAK 176 (424)
T ss_dssp HHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCC
Confidence 99999999877899999999999999999988878888999999999999887766555443222111222232211113
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|++++++.+++.++++++|++||+++++|.+.++++++++|+++ ++||++||+||+|+||++|..+..+.+
T Consensus 177 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~ 255 (424)
T 2e7u_A 177 LTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELL 255 (424)
T ss_dssp TEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHH
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHh
Confidence 4667788899999999975434789999999999999999999999999999 999999999999999966766677788
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
++.||++|+||++++|+|+|++++++++++.+.......+++|++.++++++++.++++.+++ +++.++++++.+++++
T Consensus 256 ~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~ 335 (424)
T 2e7u_A 256 GLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEA 335 (424)
T ss_dssp TCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998887533345667899999999999999998877 8899999999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHH
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~ 399 (411)
+|+++..+++....+++.|+++++++.+....++...+.++.....++.+.|.++||++.+++...+++++.+|++++++
T Consensus 336 ~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~~~i~~ 415 (424)
T 2e7u_A 336 GLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEK 415 (424)
T ss_dssp HHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSSCEECCTTCCHHHHHH
T ss_pred HHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCCceEeeccCCHHHHHH
Confidence 99998766676656778899999988532111111111223345678999999999999998766788899999999999
Q ss_pred HHHHHHHHH
Q 015230 400 TITAAEKVL 408 (411)
Q Consensus 400 ~i~~l~~~~ 408 (411)
++++|++++
T Consensus 416 ~l~~l~~~l 424 (424)
T 2e7u_A 416 TLEALRKAL 424 (424)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998763
No 9
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=7.4e-56 Score=424.99 Aligned_cols=408 Identities=41% Similarity=0.736 Sum_probs=333.6
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
+|.|+++.+|.|. ...|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++++..++++.+...+
T Consensus 23 ~~~~~~~~~~~~~--~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~ 100 (434)
T 2epj_A 23 FPGGVNSPVRAAV--KPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVL 100 (434)
T ss_dssp SGGGSSSGGGGGC--SSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHH
T ss_pred cCCCcCccccccc--CCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 5788999888872 13499999999999999999999999999998999999999999999999986556678888999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++++.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.+......+...+++.....
T Consensus 101 l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~ 180 (434)
T 2epj_A 101 LAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVAR 180 (434)
T ss_dssp HHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHT
T ss_pred HHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccC
Confidence 99999998867899999999999999999988778888999999999999887766554432211111112222111112
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|++++++.+++.++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||++|..+..+.+
T Consensus 181 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~ 260 (434)
T 2epj_A 181 LTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYF 260 (434)
T ss_dssp TEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHH
T ss_pred ceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHh
Confidence 46667788999999999854347999999999999999999999999999999999999999999999866766677788
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 320 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 320 (411)
++.||++|+||++++|+|+|++++++++++.+.......+++|++.++++++++.++++.++++++.++++++.+++++.
T Consensus 261 ~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~ 340 (434)
T 2epj_A 261 NIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEA 340 (434)
T ss_dssp TCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998887643333466789999999999999999887788999999999999999
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~ 400 (411)
|+++..+++....+++.|+++++++.+.....+.....++.....++.+.|.++||++.+++...+++++.+|+++++++
T Consensus 341 L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~ 420 (434)
T 2epj_A 341 ASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIA 420 (434)
T ss_dssp HHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCEECCTTCSHHHHHHH
T ss_pred HHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcEEEeccCCHHHHHHH
Confidence 99886666766667888999999985421111111111223456789999999999999987767888999999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 421 l~~l~~~l~~ 430 (434)
T 2epj_A 421 VEGLRSSLKT 430 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 10
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=4.2e-61 Score=458.25 Aligned_cols=391 Identities=32% Similarity=0.553 Sum_probs=334.1
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||+|+++++|.|... |+++.+++|+++||.||++|+||.+++++.++||+||++++|+.++++++..+.++.+...+
T Consensus 68 ~~~g~~~~~~~~~~~---p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~ 144 (465)
T 2yky_A 68 MPGGNTRSILFHRPF---PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEAL 144 (465)
Confidence 699999999998754 99999999999999999999999999999999999999999999999986556678888899
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++.|++.+++.++++|++||++|++.|+++++.++++++||+++++|||.+..++ +| +...+++.
T Consensus 145 Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg--------~~~~g~~~---- 210 (465)
T 2yky_A 145 FAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG--------HAPTNAPY---- 210 (465)
Confidence 99999999877789999999999999999998888899999999999999887766 22 11122211
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|+++++++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+ |++|.+++.+++
T Consensus 211 ~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~ 289 (465)
T 2yky_A 211 HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEML 289 (465)
Confidence 3556778899999999986556889999999999999999999999999999999999999999999 877777788888
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
++.||++||||++++|+|+||+++++++++.+.+ ....++++|+++++++++++.++++.+++++++++++++.++++
T Consensus 290 gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~ 369 (465)
T 2yky_A 290 GISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFR 369 (465)
Confidence 9999999999999999999999999999998875 22345678999999999999999999887889999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQ 398 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~ 398 (411)
++|+++..+++....+++.|+++++++.+.+..++...+.++......+.+.|+++||++.|+++.. +++.+|+++++
T Consensus 370 ~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~--~s~~~t~edid 447 (465)
T 2yky_A 370 ANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA--LSLEIADAGRD 447 (465)
Confidence 9999987777776778899999999886422222222222233345788999999999999987443 77899999999
Q ss_pred HHHHHHHHHHHhC
Q 015230 399 HTITAAEKVLRQI 411 (411)
Q Consensus 399 ~~i~~l~~~~~~~ 411 (411)
+++++|+++++++
T Consensus 448 ~~l~~l~~~l~~~ 460 (465)
T 2yky_A 448 AFAEALADFIGEQ 460 (465)
Confidence 9999999988753
No 11
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=1.4e-55 Score=426.16 Aligned_cols=396 Identities=19% Similarity=0.261 Sum_probs=326.2
Q ss_pred ccCcccccccCCC-CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHH
Q 015230 5 VNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENV 80 (411)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~ 80 (411)
+|++...+..... .|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++.. +.++.+...+
T Consensus 22 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~ 101 (476)
T 3i5t_A 22 ILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAAR 101 (476)
T ss_dssp BCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHH
T ss_pred cccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHH
Confidence 4666555554432 58999999999999999999999999999999999999999999999998532 2467899999
Q ss_pred HHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCC
Q 015230 81 LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSP 152 (411)
Q Consensus 81 l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 152 (411)
+++++++.++ +.++++|++||++|++.||++++.+ +++++||+++++|||.+..+..+++........ +...
T Consensus 102 la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~ 181 (476)
T 3i5t_A 102 LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQD 181 (476)
T ss_dssp HHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCT
T ss_pred HHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCC
Confidence 9999999998 7899999999999999999999877 788999999999999998888887765433221 1111
Q ss_pred CCCCCCCCceeecCC-----CC---------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC
Q 015230 153 GVPKGATYETLTAPF-----ND---------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 217 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~-----~d---------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~ 217 (411)
+ ......|+ ++ ++++++.+++. ++++++|++||+++++|.+.++++|+++|+++|++||
T Consensus 182 ~------~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~g 255 (476)
T 3i5t_A 182 R------ISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHD 255 (476)
T ss_dssp T------EEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred C------cEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 1 11112222 21 78899888753 2579999999999999999999999999999999999
Q ss_pred CEEEEecccccc-ccccCcccc-ccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHH
Q 015230 218 ALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLA 290 (411)
Q Consensus 218 ~~li~De~~~g~-~~g~~~~~~-~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~ 290 (411)
++||+||+|+|| ++|.+++.+ ++++.||++|+||++++| +|+|++++++++++.+.+. ....+++|+++++++
T Consensus 256 illI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a 335 (476)
T 3i5t_A 256 ILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVA 335 (476)
T ss_dssp CEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHH
T ss_pred CEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHH
Confidence 999999999999 999888888 899999999999999999 9999999999999988742 223567899999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH
Q 015230 291 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370 (411)
Q Consensus 291 ~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (411)
++++.++++.+++++++++++++.+++++.|+++. .++.+..+++.|+++++++.+...... ...+.......+.+.
T Consensus 336 ~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~v~~~G~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~ 412 (476)
T 3i5t_A 336 CAAALANIELMEREGIVDQAREMADYFAAALASLR-DLPGVAETRSVGLVGCVQCLLDPTRAD--GTAEDKAFTLKIDER 412 (476)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TSTTEEEEEEETTEEEEEECCC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCceeEEEEecCccccc--cccchhHHHHHHHHH
Confidence 99999999998878999999999999999999653 567788899999999999864311000 000011235788999
Q ss_pred HHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 371 MLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 371 l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.++||++.+.+ +.+|++ +++|++++++++++|++++++
T Consensus 413 l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 413 CFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999976 677874 899999999999999998865
No 12
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=1.3e-54 Score=417.42 Aligned_cols=378 Identities=23% Similarity=0.320 Sum_probs=320.1
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC--C
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--S 91 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~--~ 91 (411)
..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++..+ .++.+.+.++++++++.++ .
T Consensus 42 ~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 121 (451)
T 3oks_A 42 TMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRG 121 (451)
T ss_dssp SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCC
Confidence 3689999999999999999999999999999999999999999999999886443 3578889999999999997 4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCC--
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (411)
.++++||+||++|++.|+++++.++++++||+++++|||.+..+..+++.. .+...+.. ....+..++.+
T Consensus 122 ~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 194 (451)
T 3oks_A 122 DKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGP-------FAPEIYRAPLSYP 194 (451)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCS-------CCSSEEEECCCCH
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCC-------CCCCcEEeCCCcc
Confidence 689999999999999999999888899999999999999999998887763 22211110 11123333333
Q ss_pred ----------------CHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 169 ----------------DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 169 ----------------d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
+++.+++.+++ .++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||
T Consensus 195 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 274 (451)
T 3oks_A 195 FRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274 (451)
T ss_dssp HHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 24444455553 23579999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 230 RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
++|..+..+++++.||++||||++++|+|+||+++++++++.+.+ ..+++|++.++++++++.++++.+++++++++
T Consensus 275 ~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 351 (451)
T 3oks_A 275 RTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHV---SGLGGTYGGNPIACAAALATIETIESEGLVAR 351 (451)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCT---TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcC---CCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Confidence 999888888999999999999999999999999999999888763 34677999999999999999998877899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--ccee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGF 387 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~ 387 (411)
++++.+++++.|+++...++....+++.|+++++++.+... ..+......++.+.|.++||++.+++. +.+|
T Consensus 352 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 425 (451)
T 3oks_A 352 AQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGT------TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVR 425 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTS------CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCcc------CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEE
Confidence 99999999999999988888888889999999999854111 124455678899999999999998764 4566
Q ss_pred e--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 388 T--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 388 ~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+ ++.+|++++++++++|++++++
T Consensus 426 i~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 426 FLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 5 6888999999999999999875
No 13
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.1e-54 Score=418.04 Aligned_cols=376 Identities=26% Similarity=0.360 Sum_probs=317.5
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC--C
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP--S 91 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~--~ 91 (411)
..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++..+ .++.+...++++++++.++ .
T Consensus 45 ~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 124 (453)
T 4ffc_A 45 TAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDH 124 (453)
T ss_dssp SCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS
T ss_pred CCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCC
Confidence 3689999999999999999999999999999999999999999999999986443 3678889999999999997 4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCC--
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFN-- 168 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (411)
.++++||+||+||++.|+++++.++++++||+++++|||.+..+..+++.. .+...+.. ....+..++.+
T Consensus 125 ~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 197 (453)
T 4ffc_A 125 DKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGP-------FAPEVYRMPASYP 197 (453)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS-------CCSSEEEECCCCT
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCC-------CCCCcEEeCCCcc
Confidence 689999999999999999999888899999999999999999988887753 22211110 01122223322
Q ss_pred --C-------------HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc
Q 015230 169 --D-------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232 (411)
Q Consensus 169 --d-------------~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g 232 (411)
| .+.+++.+. ++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|| ++|
T Consensus 198 ~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g 275 (453)
T 4ffc_A 198 LRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG 275 (453)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc
Confidence 2 233333332 3579999999999999999999999999999999999999999999999 999
Q ss_pred cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 312 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~ 312 (411)
.+++.+++++.||++||||++++|+|+||+++++++++.+.+ ..+++|++.++++++++.++++.++++++.+++++
T Consensus 276 ~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 352 (453)
T 4ffc_A 276 AWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYA---GGLGGTYGGNPVTCAAAVAALGVMRELDLPARARA 352 (453)
T ss_dssp SSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCT---TSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcc---cCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888888999999999999999999999999999999988764 34677999999999999999998877899999999
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT-- 388 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~-- 388 (411)
+.+++++.|+++...++....+++.|+++++++.+... ..++.....++.+.|.++||++.+++. +.+|+
T Consensus 353 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~ 426 (453)
T 4ffc_A 353 IEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGT------LEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLP 426 (453)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTS------CCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECC
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcc------cCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEEC
Confidence 99999999999988888888889999999999854211 124455678899999999999999764 45565
Q ss_pred ecCCCHHHHHHHHHHHHHHHHh
Q 015230 389 SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++.+|++++++++++|++++++
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 427 PLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999875
No 14
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=5.8e-55 Score=419.77 Aligned_cols=379 Identities=24% Similarity=0.342 Sum_probs=314.9
Q ss_pred CCCeEEEeecCcEEEec-CCC--EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC
Q 015230 17 GQPIVFDSVKGSHMWDI-DGN--EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~-~g~--~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~ 90 (411)
..|+++.+++|+++||. ||+ +|+||.++++++++||+||++++|+.+++++...+ .++.+...++++++++.++
T Consensus 53 ~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~ 132 (457)
T 3tfu_A 53 VSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITP 132 (457)
T ss_dssp SCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSS
T ss_pred CCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence 35899999999999999 999 99999999999999999999999999999885332 3568889999999999998
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcC-CCCcccCC-CCCCCCCCCCCCc
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG-SGVATLGL-PDSPGVPKGATYE 161 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~ 161 (411)
+.++++|++||++|++.|+++++.+ +++++||+++++|||.+..+...++ .......+ +...+.... ..+
T Consensus 133 ~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p 211 (457)
T 3tfu_A 133 AGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFA-PQV 211 (457)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEE-CCC
T ss_pred CCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEe-cCC
Confidence 7889999999999999999998776 6788999999999999988877744 22111111 111111000 000
Q ss_pred eeecCCCCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 162 TLTAPFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 162 ~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
.....++|+++++++++++++++++|++|| +++++|.+.++++++++|+++|++||++||+||+|+|| ++|.+++.++
T Consensus 212 ~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~ 291 (457)
T 3tfu_A 212 PRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADH 291 (457)
T ss_dssp CSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred CcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHh
Confidence 001122478999999986556899999999 99999999999999999999999999999999999999 9998888899
Q ss_pred cCCCcchhhhhhhccCC-cccccccccHHHHHHhc--CCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 015230 240 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGE 316 (411)
Q Consensus 240 ~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~ 316 (411)
+++.||++||||+++|| +|+|++++++++++.+. ......+++|+++++++++++.++++.++++++.++++++.++
T Consensus 292 ~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~ 371 (457)
T 3tfu_A 292 AGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAG 371 (457)
T ss_dssp HTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999988 69999999999999885 2233467789999999999999999998888999999999999
Q ss_pred HHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCH
Q 015230 317 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSS 394 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~ 394 (411)
+++.|+++. .++....+++.|+++++++.+. .+..++.+.|+++||++.+.+ +.+|+ ++++|+
T Consensus 372 l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~-------------~~~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 372 LTAGLDTAR-ALPAVTDVRVCGAIGVIECDRP-------------VDLAVATPAALDRGVWLRPFR-NLVYAMPPYICTP 436 (457)
T ss_dssp HHHHHGGGG-GSTTEEEEEECSSCEEEEESSC-------------CCHHHHHHHHHHTTEECCCBT-TEEEECCCTTCCH
T ss_pred HHHHHHHHh-cCCCeeeeecCCeEEEEEECCc-------------ccHHHHHHHHHHCCeEEEecC-CEEEEECCCCCCH
Confidence 999998875 5667778889999999988532 113678999999999999875 56776 578899
Q ss_pred HHHHHHHHHHHHHHHhC
Q 015230 395 DDIQHTITAAEKVLRQI 411 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~~ 411 (411)
+++++++++|+++++++
T Consensus 437 eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 437 AEITQITSAMVEVARLV 453 (457)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 15
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=1.6e-54 Score=417.73 Aligned_cols=399 Identities=21% Similarity=0.264 Sum_probs=327.6
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLA 82 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~ 82 (411)
+|+.++.|.+ ..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++.. ..++.+...+++
T Consensus 20 ~~~~~~~~~~--~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la 97 (452)
T 3n5m_A 20 VWHGMRPFSP--NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLA 97 (452)
T ss_dssp BCCTTSCSCG--GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHH
T ss_pred cccccccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHH
Confidence 3444444432 358999999999999999999999999999999999999999999999988532 346788899999
Q ss_pred HHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc---c---CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCC
Q 015230 83 EMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGV 154 (411)
Q Consensus 83 ~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~---~---~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 154 (411)
+++++.++ +.+ |+||+||++|++.|+++++.+ + ++++||+++++|||.+..+..+.+........ +...+.
T Consensus 98 ~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (452)
T 3n5m_A 98 EKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGF 176 (452)
T ss_dssp HHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCE
T ss_pred HHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCC
Confidence 99999987 445 999999999999999988755 5 78899999999999988887777664432211 211222
Q ss_pred CCCCCCceeecCCCC---------HHHHHHHHH-cCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 155 PKGATYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 155 ~~~~~~~~~~~~~~d---------~~~l~~~~~-~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
..........++++| ++++++.++ .+++++++|++||+ +| +|.+.++++++++|+++|++||++||+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~D 255 (452)
T 3n5m_A 177 LHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISD 255 (452)
T ss_dssp EEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred eEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 111122334455666 899999997 44457999999999 88 9999999999999999999999999999
Q ss_pred cccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC---CCCcccccCCCCCHHHHHHHHHHH
Q 015230 224 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP---AGPMYQAGTLSGNPLAMTAGIHTL 298 (411)
Q Consensus 224 e~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~~~a~~~~~l 298 (411)
|+|+|| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+.. .....+++|++.++++++++.+++
T Consensus 256 Ev~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 335 (452)
T 3n5m_A 256 EVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335 (452)
T ss_dssp CTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHH
T ss_pred cchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHH
Confidence 999999 999888888999999999999999999 999999999999999864 344557789999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe
Q 015230 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 378 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 378 (411)
+.++++++.++++++.+++++.|+++...++....+++.|+++++++.+...... .-+.....++.+.|.++||++
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~----~~~~~~~~~~~~~l~~~Gv~~ 411 (452)
T 3n5m_A 336 EIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKE----PIDNDKIASVVNACKEKGLII 411 (452)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTE----ECCHHHHHHHHHHHHHTTEEC
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccC----CCCHHHHHHHHHHHHHCCcEE
Confidence 9887789999999999999999999877788888889999999999854221110 001233467899999999999
Q ss_pred ccCC------Ccceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 379 APSQ------FEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 379 ~~~~------~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+++ .+.+|+ ++.+|++++++++++|+++++++
T Consensus 412 ~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 412 GRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp EECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred eecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 9986 356787 58899999999999999998764
No 16
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.8e-54 Score=417.80 Aligned_cols=380 Identities=20% Similarity=0.250 Sum_probs=317.0
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++. ...++.+...++++++++.++ +.
T Consensus 37 ~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~ 116 (472)
T 3hmu_A 37 GTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDL 116 (472)
T ss_dssp CCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTE
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 5899999999999999999999999999999999999999999999999853 124568889999999999998 68
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
++|+|++||++|++.|+++++.+ +++++||+++++|||.+..+..+++.......+.... .+..++
T Consensus 117 ~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~--------~~~~v~ 188 (472)
T 3hmu_A 117 NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIP--------DVHHIN 188 (472)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCS--------SEEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCC--------CcEEeC
Confidence 89999999999999999998776 4678999999999999988888777543321111011 112222
Q ss_pred --C----C---C--------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc
Q 015230 167 --F----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 228 (411)
Q Consensus 167 --~----~---d--------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g 228 (411)
+ + | ++++++.+++. ++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|
T Consensus 189 ~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~g 268 (472)
T 3hmu_A 189 QPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG 268 (472)
T ss_dssp CCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccC
Confidence 1 2 2 78888888753 357999999999999999999999999999999999999999999999
Q ss_pred c-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 229 ~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+. .....+++|+++++++++++.++++.++++++
T Consensus 269 fgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~-~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~ 347 (472)
T 3hmu_A 269 FGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENI 347 (472)
T ss_dssp TTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHT-TSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcc-cCCccccCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 9 999888888999999999999999976 89999999999999883 23456778999999999999999998877899
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccc-hHHHHHHHHHHHHcCeEeccCCCc
Q 015230 307 YEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE-TTKFARFYRGMLEEGVYFAPSQFE 384 (411)
Q Consensus 307 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~~ 384 (411)
+++++ ++.+++++.|+++ ..++.+..+++.|+++++++........ ...+. ......+.+.|+++||++.+++ +
T Consensus 348 ~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~ 423 (472)
T 3hmu_A 348 LDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASRA--KFASEPGTIGYICRERCFANNLIMRHVG-D 423 (472)
T ss_dssp HHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGTC--CBSSCTTHHHHHHHHHHHHTTBCCEEET-T
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCccccc--cccchhHHHHHHHHHHHHHCCcEEEecC-C
Confidence 99999 9999999999776 3467788899999999999864211000 00011 2345788999999999999987 6
Q ss_pred ceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 385 AGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 385 ~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|+ ++++|++++++++++|++++++
T Consensus 424 ~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 424 RMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777 4899999999999999998865
No 17
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=1.3e-53 Score=412.02 Aligned_cols=392 Identities=18% Similarity=0.220 Sum_probs=320.8
Q ss_pred CCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCCCHHHHHHHHHHHhhCC
Q 015230 15 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~~~~~~~l~~~l~~~~~ 90 (411)
.+..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++. ...++.+...++++++++.++
T Consensus 30 ~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~ 109 (460)
T 3gju_A 30 GESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP 109 (460)
T ss_dssp TCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC
T ss_pred cCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC
Confidence 3445699999999999999999999999999999999999999999999998842 235678889999999999987
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCce
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYET 162 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 162 (411)
+.++|+||+||++|++.++++++.+ +++++||+++++|||.+..+..+++...+...+ +...++.... ..
T Consensus 110 ~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p 187 (460)
T 3gju_A 110 KGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTE--AP 187 (460)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEEC--CC
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeC--CC
Confidence 7889999999999999999988765 578999999999999998888887764433221 1111110000 00
Q ss_pred eecCCCC------------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 163 LTAPFND------------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 163 ~~~~~~d------------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
..+.++| ++++++++++. ++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 267 (460)
T 3gju_A 188 YYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGF 267 (460)
T ss_dssp CGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred ccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 1112233 68899888742 3579999999999999999999999999999999999999999999999
Q ss_pred -ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC----CCcccccCCCCCHHHHHHHHHHHHHHhc
Q 015230 230 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE 303 (411)
Q Consensus 230 -~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~a~~~~~l~~~~~ 303 (411)
++|.++..+++++.||++||||++++| +|+|++++++++++.+... ....+++|++.++++++++.++++.+++
T Consensus 268 gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 347 (460)
T 3gju_A 268 GRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE 347 (460)
T ss_dssp TTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999888888899999999999999988 7999999999999888421 2445678999999999999999998877
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 383 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 383 (411)
+++.++++++.+++++.|++....++....+++.|+++++++........ ...+......++.+.|.++||++.+++.
T Consensus 348 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 425 (460)
T 3gju_A 348 MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRV--FFDASQKIGPQVATALAASGVIGRAMPQ 425 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGCHHHHHHHHHHHTTEECEECSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccc--cccchHHHHHHHHHHHHHCCeEEecCCC
Confidence 89999999999999999988877778888899999999999864321100 0012223457889999999999998763
Q ss_pred -cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 384 -EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 -~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++ +++|++++++++++|++++++
T Consensus 426 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 426 GDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 567774 899999999999999998875
No 18
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=2.8e-54 Score=415.37 Aligned_cols=402 Identities=23% Similarity=0.277 Sum_probs=308.1
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVL 81 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l 81 (411)
+|++...++.++..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++.. ..++.+...++
T Consensus 13 ~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l 92 (448)
T 3dod_A 13 LWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQL 92 (448)
T ss_dssp BCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHH
T ss_pred ccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHH
Confidence 455554444444469999999999999999999999999999999999999999999999988532 34667889999
Q ss_pred HHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc---cC---CcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCC
Q 015230 82 AEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG---RERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPG 153 (411)
Q Consensus 82 ~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~---~~---~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 153 (411)
++++++.++ +.++++||+||++|++.|+++++.+ ++ +++||+++++|||.+..+..+++.......+ +...+
T Consensus 93 a~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 172 (448)
T 3dod_A 93 AETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFE 172 (448)
T ss_dssp HHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------
T ss_pred HHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCC
Confidence 999999997 6799999999999999999998776 66 7999999999999988877776654322111 11111
Q ss_pred CCCCCCCc--------eeecCCCCHHHHHHHHHcCCCcEEEEEEcccC-CCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 154 VPKGATYE--------TLTAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 154 ~~~~~~~~--------~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~-~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
+....... ...+.++|+++++++++++++++++|++||++ +++|.+.++++++++|+++|++||++||+||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE 252 (448)
T 3dod_A 173 SYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDE 252 (448)
T ss_dssp CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred ceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEec
Confidence 10000000 01112235899999998544689999999999 9999999999999999999999999999999
Q ss_pred ccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcC----CCCcccccCCCCCHHHHHHHHHHH
Q 015230 225 VMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAGTLSGNPLAMTAGIHTL 298 (411)
Q Consensus 225 ~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~a~~~~~l 298 (411)
+|+|| ++|..++.+++++.||++||||++++| +|+|++++++++++.+.. .....+++|++.++++++++.+++
T Consensus 253 v~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal 332 (448)
T 3dod_A 253 VATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENL 332 (448)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHH
T ss_pred cccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHH
Confidence 99999 889888888999999999999999999 599999999999998864 122456779999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe
Q 015230 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 378 (411)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v 378 (411)
+.+++++++++++++.+++++.|++ ...++....+++.|.++++++......... .......+.++.+.|+++||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~ 409 (448)
T 3dod_A 333 ALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKEP--YPADRRIGYKVSLKMRELGMLT 409 (448)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTBC--CCGGGCHHHHHHHHHHHTTEEC
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCcccccc--cchhhHHHHHHHHHHHHCCcEE
Confidence 9887789999999999999999998 566777778888999999998643110000 0001112467899999999999
Q ss_pred ccCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 379 APSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 379 ~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.|++ +.+|+ ++.+|++++++++++|++++++
T Consensus 410 ~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 410 RPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp CEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9986 67787 7899999999999999998875
No 19
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=3.3e-53 Score=409.00 Aligned_cols=397 Identities=20% Similarity=0.271 Sum_probs=315.2
Q ss_pred ccCcccccccCC-CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCCCHHHH
Q 015230 5 VNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLEN 79 (411)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~~~~~~ 79 (411)
+|++...+.... ..|+++.+++|+++||.+|++|+||.++++++++||+||++++|+.++++++. ...++.+...
T Consensus 18 ~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~ 97 (459)
T 4a6r_A 18 HLHPFTDTASLNQAGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVV 97 (459)
T ss_dssp ----------------CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHH
T ss_pred ccCCccccccccccCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHH
Confidence 455443333332 25899999999999999999999999999999999999999999999998843 1246788999
Q ss_pred HHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCC
Q 015230 80 VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDS 151 (411)
Q Consensus 80 ~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~ 151 (411)
++++++++.++ +.++|+|++||++|++.++++++.+ +++++||+++++|||.+..+..+++.......+ +..
T Consensus 98 ~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 177 (459)
T 4a6r_A 98 ELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI 177 (459)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSC
T ss_pred HHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCC
Confidence 99999999998 6899999999999999999988765 467899999999999998888887764433211 111
Q ss_pred CCCCCCCCCceeecCC----C---C--------HHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH
Q 015230 152 PGVPKGATYETLTAPF----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 215 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~----~---d--------~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~ 215 (411)
.+ ...+..|+ + | ++++++.+++. ++++++|++||+++++|.+.++++++++|+++|++
T Consensus 178 ~~------~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 178 PG------MAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRK 251 (459)
T ss_dssp SS------EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred CC------CEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH
Confidence 11 11111121 1 2 78888888753 35789999999999999999999999999999999
Q ss_pred hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHH
Q 015230 216 NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 293 (411)
Q Consensus 216 ~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~ 293 (411)
||++||+||+|+|| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+.......+++|++.+++++++
T Consensus 252 ~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 331 (459)
T 4a6r_A 252 YDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331 (459)
T ss_dssp TTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHH
T ss_pred cCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHH
Confidence 99999999999999 999888888899999999999999976 8999999999998887632234566799999999999
Q ss_pred HHHHHHHHhcCChHHHHH-HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH
Q 015230 294 GIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 372 (411)
Q Consensus 294 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 372 (411)
+.++++.++++++.++++ ++.+++++.|.+....++....+++.|+++++++....... ....+.......+.+.|.
T Consensus 332 a~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 409 (459)
T 4a6r_A 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR--ELFPDFGEIGTLCRDIFF 409 (459)
T ss_dssp HHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTT--BCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccc--ccccchHHHHHHHHHHHH
Confidence 999999887789999999 99999999994444566778888999999999986432110 001123344678899999
Q ss_pred HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 373 EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 373 ~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++||++.+++ +.+|+ ++.+|++++++++++|++++++
T Consensus 410 ~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 410 RNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp HTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999976 67777 4899999999999999998865
No 20
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=6.5e-53 Score=406.64 Aligned_cols=401 Identities=32% Similarity=0.511 Sum_probs=305.4
Q ss_pred CCCCccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHH
Q 015230 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~ 80 (411)
||.|+++.+|.|.. .|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++.+..++++.+++.+
T Consensus 25 ~~~~~~~~~~~~~~---~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~ 101 (453)
T 2cy8_A 25 MPDGVTADTRAFDP---HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVR 101 (453)
T ss_dssp SCCC------CCSS---CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHH
T ss_pred cCCCCCccccccCC---CCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 68999999998864 489999999999999999999999999999999999999999999999886566788999999
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATY 160 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (411)
+++++.+.+++.++++|++||++|++.++++++.++++++||+++++||+.+..+....+.... .+...+++.....
T Consensus 102 la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~---~~~~~g~~~~~~~ 178 (453)
T 2cy8_A 102 WAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFD---GQPAPGVLPETTA 178 (453)
T ss_dssp HHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC-------------------------------CGG
T ss_pred HHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccC---CCcCCCCCccccC
Confidence 9999999987789999999999999999998777788899999999999987766554432000 0111222211123
Q ss_pred ceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCcccccc
Q 015230 161 ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~ 240 (411)
.+..++++|++++++.++++++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+||+.|..+..+.+
T Consensus 179 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~ 258 (453)
T 2cy8_A 179 NTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALL 258 (453)
T ss_dssp GEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHh
Confidence 46677888999999999854357899999999888898899999999999999999999999999998865666667778
Q ss_pred CCCcchhhhhhhccCCcccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHH-HhcCChHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKR-LKEPGTYEYLNKITGEL 317 (411)
Q Consensus 241 ~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~-~~~~~~~~~~~~~~~~~ 317 (411)
++.||++|+||++++|+|+|++++++++++.+... ....+++|++.++++++++.++++. + .+++.++++++.+++
T Consensus 259 ~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l 337 (453)
T 2cy8_A 259 DVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFA 337 (453)
T ss_dssp TCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred CCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 88999999999999999999999999998887641 2234566899999999999999998 7 678899999999999
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEec-----C-CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA 391 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~ 391 (411)
++.|+++..+++....+++.|.++++++.. . ....+.....++.....++.+.|.++||++.+++ .+++++.
T Consensus 338 ~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~--~~~l~~~ 415 (453)
T 2cy8_A 338 REAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQ 415 (453)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTTT--EEECCTT
T ss_pred HHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCCC--CEEeecc
Confidence 999998866667666678889999998853 1 0000000001122345788999999999997653 4778899
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
+|++++++++++|++++++
T Consensus 416 ~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 416 HEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 21
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=4e-51 Score=392.72 Aligned_cols=377 Identities=22% Similarity=0.337 Sum_probs=314.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-CC-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-SI- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~~- 92 (411)
.|+++.+++|++++|.+|++|+||.++++++++||+||++++++.+++++...+ .++.+.+.++++++++.++ +.
T Consensus 25 ~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (439)
T 3dxv_A 25 FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGT 104 (439)
T ss_dssp SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTT
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 588999999999999999999999999988899999999999999999886433 3568889999999999987 56
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC--cccCC-CCCCCCCCCCCCceeecCCC-
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV--ATLGL-PDSPGVPKGATYETLTAPFN- 168 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~- 168 (411)
++++||+||++|++.++++++.+.++++||+++++||+.+..+..+.+... ....+ +.. ..+..++++
T Consensus 105 ~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 176 (439)
T 3dxv_A 105 HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLI--------LLPYPDPYRP 176 (439)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEE--------EECCCCSSSC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCC--------CCcEEcCCCc
Confidence 799999999999999999887778889999999999999988877766533 11110 000 011222222
Q ss_pred ---------CHHHHHHHHH-cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc
Q 015230 169 ---------DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ 237 (411)
Q Consensus 169 ---------d~~~l~~~~~-~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~ 237 (411)
|+++++++++ .+++++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|| +.|..+..
T Consensus 177 ~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~ 256 (439)
T 3dxv_A 177 YRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCF 256 (439)
T ss_dssp BTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGG
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHH
Confidence 6899999994 445689999999999999999999999999999999999999999999999 88887788
Q ss_pred cccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 015230 238 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL 317 (411)
Q Consensus 238 ~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~ 317 (411)
+.+++.||++||||++++|+|+||+++++++++.+.. ..+..++ .++++++++.++++.++++++.++++++.+++
T Consensus 257 ~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~ 332 (439)
T 3dxv_A 257 EHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA---FAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLL 332 (439)
T ss_dssp GGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSS---SSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcC---CCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8889999999999999999999999999999888764 2356688 99999999999999887788999999999999
Q ss_pred HHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceee--ecCCC
Q 015230 318 TQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHS 393 (411)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~--~~~~t 393 (411)
++.|+++...++....+++.|+++++++.+.... ..+.......+.+.|.++||++.+++. +.+|+ ++.+|
T Consensus 333 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t 407 (439)
T 3dxv_A 333 RDGLSELAKRHPLIGDIRGRGLACGMELVCDRQS-----REPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTIT 407 (439)
T ss_dssp HHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCC
T ss_pred HHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCC
Confidence 9999999878888888889999999988543211 113445667899999999999999864 56777 67889
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 015230 394 SDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~~~ 411 (411)
++++++++++|+++++++
T Consensus 408 ~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 408 ETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp HHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998753
No 22
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.8e-51 Score=388.51 Aligned_cols=369 Identities=24% Similarity=0.282 Sum_probs=318.3
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCC
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIE 93 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~ 93 (411)
...|+++.+++|+++||.+|++|+||.++++++++||+||++++++.+++++... ..++.+..+++++++++.++ .+
T Consensus 16 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~ 94 (395)
T 3nx3_A 16 KRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-LE 94 (395)
T ss_dssp GSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT-CS
T ss_pred CCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-CC
Confidence 3568999999999999999999999999999999999999999999999987532 23568889999999999884 78
Q ss_pred EEEEeCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 94 MVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
+++|++||++|++.++++++.. .++++||+++++||+....+....+......... .....+..++++
T Consensus 95 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 167 (395)
T 3nx3_A 95 RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK-------PLISGVKFAKYN 167 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC-------SCCSCEEEECTT
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC-------CCCCCcEEeCCC
Confidence 9999999999999999987766 6789999999999999888777766533221111 012356778888
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|+++++++++ +++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+|| +.|..+..+.+++.||++
T Consensus 168 d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~ 244 (395)
T 3nx3_A 168 DISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM 244 (395)
T ss_dssp CHHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE
T ss_pred CHHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE
Confidence 9999998886 578999999999999999999999999999999999999999999999 888888888889999999
Q ss_pred hhhhhccCCcccccccccHHH-HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 248 TLGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
|+||++++|+|+|++++++++ ++.+.+ ..++.+++.++++++++.++++.++++++.++++++.+++++.|+++..
T Consensus 245 t~sK~~~~G~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (395)
T 3nx3_A 245 TSAKALGCGLSVGAFVINQKVASNSLEA---GDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELIN 321 (395)
T ss_dssp EECGGGTTTSCCEEEEECHHHHHHHSCT---TCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEchhhhhhhcCC---cccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 888764 3456789999999999999999887788999999999999999999887
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHH
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAA 404 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l 404 (411)
.++....+++.|+++++++.+. ....++.+.|.++||++.+++.+.+|+ ++.+|++++++++++|
T Consensus 322 ~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l 388 (395)
T 3nx3_A 322 EFDFCKKRKGLGFMQGLSLDKS-------------VKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKL 388 (395)
T ss_dssp HCTTEEEEEEETTEEEEEECTT-------------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred hCCCeEEEEeEEEEEEEEeCCc-------------chHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7787777888899999988532 123678899999999999987778887 5788999999999999
Q ss_pred HHHHHhC
Q 015230 405 EKVLRQI 411 (411)
Q Consensus 405 ~~~~~~~ 411 (411)
+++++++
T Consensus 389 ~~~l~~~ 395 (395)
T 3nx3_A 389 RKALKSF 395 (395)
T ss_dssp HHHHHTC
T ss_pred HHHHHhC
Confidence 9998764
No 23
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=1.2e-52 Score=425.50 Aligned_cols=401 Identities=19% Similarity=0.266 Sum_probs=313.7
Q ss_pred ccCcccccccCCC-CCeEEEeecCc--EEEecCCC----EEEeccCCccccccCCC-cHHHHHHHHHHHHcCCCC---CC
Q 015230 5 VNSPVRAFKSVGG-QPIVFDSVKGS--HMWDIDGN----EYIDYVGSWGPAIIGHA-DDQVLAALGETMKKGTSF---GA 73 (411)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~g~--~~~~~~g~----~~~d~~~~~~~~~~g~~-~~~v~~a~~~~l~~~~~~---~~ 73 (411)
+|++.-.++.+.. .|+++.+++|. ++||.+|+ +|+||.++||++++||+ ||++.+|+.+++++..+. ++
T Consensus 342 ~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~ 421 (831)
T 4a0g_A 342 FWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPEN 421 (831)
T ss_dssp BCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTE
T ss_pred ccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccccc
Confidence 5777665654332 48899999995 89999999 99999999999999998 999999999999985332 35
Q ss_pred CCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHH-Hhcc--------------CCcEEEEEeCCcCCCchhhh
Q 015230 74 PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--------------GRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~-~~~~--------------~~~~vi~~~~~~~~~~~~~~ 136 (411)
..+...+|+++|.+..| + .++++|++||++|++.|||++ +.+. ++.+||++.++|||.+.+++
T Consensus 422 ~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gal 501 (831)
T 4a0g_A 422 VYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAM 501 (831)
T ss_dssp ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeee
Confidence 67888999999999997 4 789999999999999999999 4442 35689999999999999999
Q ss_pred hhcCCCCcccC--CCCCCCCCCCCCC-------c--eeecC------------CCC------------------HHHHHH
Q 015230 137 VKAGSGVATLG--LPDSPGVPKGATY-------E--TLTAP------------FND------------------VSALEN 175 (411)
Q Consensus 137 ~~~g~~~~~~~--~~~~~~~~~~~~~-------~--~~~~~------------~~d------------------~~~l~~ 175 (411)
.+++...+... .+...+....... . .+.+| +++ .+.+++
T Consensus 502 s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 581 (831)
T 4a0g_A 502 EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSK 581 (831)
T ss_dssp HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHH
Confidence 98876433320 1111110000000 0 01111 222 256777
Q ss_pred HHHc-----CCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 176 LFEN-----NKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 176 ~~~~-----~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
.+++ .++++++|++||+ ++.+|++.++++|+++|+++|++||++||+||+|+|| |+|.+++.+++++.||++|
T Consensus 582 ~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiit 661 (831)
T 4a0g_A 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIAC 661 (831)
T ss_dssp HC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEE
T ss_pred HHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEE
Confidence 7752 3578999999997 9999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhccCC-cccccccccHHHHHHhcCCC---CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----H
Q 015230 249 LGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ----G 320 (411)
Q Consensus 249 ~sK~~~~G-~~~g~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~----~ 320 (411)
+||+++|| +|+|++++++++++.+.... ...+++|++++|++|++++++++.+++++++++++++.+++++ .
T Consensus 662 lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~ 741 (831)
T 4a0g_A 662 FAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEE 741 (831)
T ss_dssp ECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHH
T ss_pred EecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 79999999999999887532 3457889999999999999999999887777777666665543 3
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQ 398 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~ 398 (411)
+.+...+++.+.++++.|+++++++...... ..+....+.++.+.|+++||++.|.+ +.+|+ ++.+|+++|+
T Consensus 742 l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~lrl~pp~~~t~e~id 815 (831)
T 4a0g_A 742 LVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLIMLREDGIFTRPLG-NVIYLMCGPCTSPEICR 815 (831)
T ss_dssp HHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHHHTTEECCCBT-TEEEEECCTTCCHHHHH
T ss_pred HHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHH
Confidence 4444456788899999999999999643110 00123456789999999999999976 56765 6899999999
Q ss_pred HHHHHHHHHHHhC
Q 015230 399 HTITAAEKVLRQI 411 (411)
Q Consensus 399 ~~i~~l~~~~~~~ 411 (411)
+++++|.++++++
T Consensus 816 ~~~~~l~~~l~~l 828 (831)
T 4a0g_A 816 RLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 24
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=7.1e-51 Score=389.96 Aligned_cols=383 Identities=22% Similarity=0.285 Sum_probs=299.8
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCC-C
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-S 91 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~-~ 91 (411)
.+.|+++.+++|+++||.+|++|+||.++++++++||+||++++++.++++.... ..++.+...++++++++.++ +
T Consensus 9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~ 88 (430)
T 3i4j_A 9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP 88 (430)
T ss_dssp SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT
T ss_pred CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC
Confidence 4568999999999999999999999999998899999999999999999988532 24668889999999999998 6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceee
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLT 164 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~ 164 (411)
.++|+||+||++|++.++++++.+ ++++.||+++++||+....+..+.+........ +... ...+..
T Consensus 89 ~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 162 (430)
T 3i4j_A 89 TFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMR------PEAWPK 162 (430)
T ss_dssp TCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------C------GGGSCE
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCC------CCCceE
Confidence 889999999999999999988766 678899999999999887777666653322111 1000 002333
Q ss_pred cCCC--------CHHHHHHHHHcCC-CcEEEEEEcccCC-CCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc
Q 015230 165 APFN--------DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY 233 (411)
Q Consensus 165 ~~~~--------d~~~l~~~~~~~~-~~~~~vi~~~~~~-~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~ 233 (411)
++++ |++++++.+++.. +++++|++||+++ ++|.+.++++++++|+++|++||++||+||+|+|| +.|.
T Consensus 163 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~ 242 (430)
T 3i4j_A 163 LPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS 242 (430)
T ss_dssp ECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred cCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc
Confidence 4443 4588999887532 5789999999999 99999999999999999999999999999999999 8888
Q ss_pred Ccccccc-CCCcchhhhhhhccCC-cccccccccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015230 234 GGAQEYF-GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310 (411)
Q Consensus 234 ~~~~~~~-~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~ 310 (411)
.+..+++ ++.||++||||++++| +|+||+++++++++.+... ....++++++.++++++++.++++.++++++.+++
T Consensus 243 ~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 322 (430)
T 3i4j_A 243 PLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAA 322 (430)
T ss_dssp SSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888888 9999999999999999 9999999999999888642 12346678999999999999999988778899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhccc-c-hHHHHHHHHHHHHcCeEeccC-------
Q 015230 311 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS-E-TTKFARFYRGMLEEGVYFAPS------- 381 (411)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~Gi~v~~~------- 381 (411)
+++.+++++.|+++...++....+++.|+++++++.+..... + . ...+.++.+.|.++||++.++
T Consensus 323 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 396 (430)
T 3i4j_A 323 KERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQ------AFETPGIASRIGAAALKRGLITYPGSGAEPNG 396 (430)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------------CHHHHHHHHHHTTEECC---------
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccC------CCccHHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 999999999999988778887888899999999885321100 0 0 112467899999999999987
Q ss_pred CCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 382 QFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 382 ~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+.+|+ ++.+|++++++++++|++++++
T Consensus 397 ~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 397 RGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp --CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 2345676 4578999999999999999875
No 25
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=1.7e-50 Score=386.84 Aligned_cols=368 Identities=21% Similarity=0.330 Sum_probs=296.1
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|+++||.+|++|+||.++++..++||+||++++++.++++++.. ..++.+...++++++++.+ +.+++
T Consensus 47 ~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 125 (433)
T 1z7d_A 47 IPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL-GYDKV 125 (433)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHH-TCSEE
T ss_pred CCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhc-CCCeE
Confidence 48889999999999999999999999888889999999999999999988532 2356777889999999888 57899
Q ss_pred EEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+|++||++|++.++++++.+ +++++||+++++||+.+..+....+........ . + ....+..+++
T Consensus 126 ~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~--~---p--~~~~v~~~~~ 198 (433)
T 1z7d_A 126 LMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF--G---P--FAPQFSKVPY 198 (433)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------------------CEEEECT
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC--C---C--CCCCeEEeCC
Confidence 99999999999999987643 245899999999999887766655532211100 0 0 0124566788
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|+++++++++ .+++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..++.+.+++.||+
T Consensus 199 ~d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di 276 (433)
T 1z7d_A 199 DDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDV 276 (433)
T ss_dssp TCHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred CCHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCE
Confidence 89999999995 2478999999999999998888888999999999999999999999999 88887777888999999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||++++| +|+|++++++++++.+.. ..+..++++++++++++.++++.++++++.++++++.+++++.|+++.
T Consensus 277 ~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~ 353 (433)
T 1z7d_A 277 ILLGKALSGGHYPISAVLANDDIMLVIKP---GEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKREL 353 (433)
T ss_dssp EEECGGGGTTSSCCEEEEECHHHHTTCCT---TCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECccccCCCCCeEEEEECHHHHhhhcc---ccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999998887763 345678999999999999999988778899999999999999999875
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
..++....+++.|+++++++.... .+..++.+.|.++||++.+++.+.+|+ ++.+|++++++++++
T Consensus 354 ~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~ 421 (433)
T 1z7d_A 354 KDSKIVRDVRGKGLLCAIEFKNEL------------VNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEI 421 (433)
T ss_dssp TTCTTEEEEEEETTEEEEEECTTT------------CCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HhCCCeEEEEeeeeEEEEEEccCh------------hHHHHHHHHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHH
Confidence 556666677888999999885320 113678999999999999976667777 678899999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 422 l~~~l~~ 428 (433)
T 1z7d_A 422 IVKTVKF 428 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 26
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=3.2e-50 Score=385.41 Aligned_cols=368 Identities=24% Similarity=0.363 Sum_probs=306.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCEE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 95 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v 95 (411)
.|+++.+++|+++||.+|++|+||.+++++.++||+||++++++.++++++..+ .++.+...++++++++.+ +.+++
T Consensus 58 ~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 136 (439)
T 2oat_A 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF-NYHKV 136 (439)
T ss_dssp CSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHH-TCSEE
T ss_pred CCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhc-CCCEE
Confidence 588999999999999999999999999888899999999999999999885322 244567788999998887 57899
Q ss_pred EEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 96 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+|++||++|++.++++++.+ +++++||+++++||+.+..+....+.......+. + ....+..+++
T Consensus 137 ~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~-----p--~~~~v~~~~~ 209 (439)
T 2oat_A 137 LPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG-----P--FMPGFDIIPY 209 (439)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC-----S--CCTTEEEECS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC-----C--CCCCeEEeCC
Confidence 99999999999999987643 2447999999999999887766655322111110 0 0124567788
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcch
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~ 246 (411)
+|++++++.++. +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..++.+.+++.||+
T Consensus 210 ~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di 287 (439)
T 2oat_A 210 NDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDI 287 (439)
T ss_dssp SCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred CCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcE
Confidence 899999999862 478999999999999998888889999999999999999999999999 88887778888999999
Q ss_pred hhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||++++| +|+|++++++++++.+.. ..++.++++++++++++.++++.++++++.++++++.+++++.|+++
T Consensus 288 ~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l- 363 (439)
T 2oat_A 288 VLLGKALSGGLYPVSAVLCDDDIMLTIKP---GEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL- 363 (439)
T ss_dssp EEECGGGGTTSSCCEEEEECHHHHTTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS-
T ss_pred EEecccccCCCCCeEEEEECHHHHhccCC---CCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999 999999999998887763 34567899999999999999998877889999999999999999876
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
.++....+++.|+++++++.... .....++.+.|.++||++.+.+.+.+|+ ++.+|++++++++++
T Consensus 364 -~~~~~~~~~~~g~~~~v~l~~~~-----------~~~~~~l~~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~ 431 (439)
T 2oat_A 364 -PSDVVTAVRGKGLLNAIVIKETK-----------DWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEI 431 (439)
T ss_dssp -CTTTEEEEEEETTEEEEEECCCS-----------SCCHHHHHHHHHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHH
T ss_pred -cCCCcEEEEeeeeEEEEEEecCc-----------cHHHHHHHHHHHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHH
Confidence 24555567788999999885321 0113578899999999999976677887 678999999999999
Q ss_pred HHHHHHhC
Q 015230 404 AEKVLRQI 411 (411)
Q Consensus 404 l~~~~~~~ 411 (411)
|+++++++
T Consensus 432 l~~~l~~~ 439 (439)
T 2oat_A 432 INKTILSF 439 (439)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99998764
No 27
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=1e-49 Score=382.41 Aligned_cols=387 Identities=23% Similarity=0.309 Sum_probs=309.7
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCC-CCCE
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVP-SIEM 94 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~-~~~~ 94 (411)
.|+++.+++|+++||.+|++|+||.++.++.++||+||++++++.++++.+. ..+++.+...++++.+++.++ +.++
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~ 104 (433)
T 1zod_A 25 EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDR 104 (433)
T ss_dssp CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCE
T ss_pred CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCE
Confidence 4888999999999999999999999998888999999999999999998752 245677888999999999998 6899
Q ss_pred EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC------
Q 015230 95 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------ 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 168 (411)
|+||+||++|++.++++++.++++++||+++++||+....+....+........+...+.........+..+++
T Consensus 105 v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (433)
T 1zod_A 105 ALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYD 184 (433)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEEC
T ss_pred EEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhh
Confidence 99999999999999998766677789999999999998887766554211100011111100000001112333
Q ss_pred ---CHHHHHHHHHcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC
Q 015230 169 ---DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 169 ---d~~~l~~~~~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~ 243 (411)
|++++++.+++. ++++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+.+++.
T Consensus 185 ~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~ 264 (433)
T 1zod_A 185 YLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVT 264 (433)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCC
Confidence 489999988752 2478999999998889988888999999999999999999999999999 88877777788889
Q ss_pred cchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 244 ~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (411)
||++|+||++++|+|+||+++++++++.+... ...+++|++.++++++++.++++.++++++.++++++.++++++|++
T Consensus 265 ~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~ 343 (433)
T 1zod_A 265 PDILTLSKTLGAGLPLAAIVTSAAIEERAHEL-GYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD 343 (433)
T ss_dssp CSEEEECHHHHTTSSCEEEEECHHHHHHHHHT-TCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCCCeeEEEEhHHHHHhhccC-CCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887642 12344688999999999999999887788999999999999999998
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceee--ecCCCHHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFT--SLAHSSDDI 397 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~--~~~~t~~~i 397 (411)
+...++....+++.|+++++++.+.... ..+......++.+.|.++||++.+++. +.+|+ ++.+|++++
T Consensus 344 l~~~~~~~~~~~~~g~~~~i~~~~~~~~-----~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i 418 (433)
T 1zod_A 344 LMERFDCIGDVRGRGLLLGVEIVKDRRT-----KEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEI 418 (433)
T ss_dssp HHHHCTTEEEEEEETTEEEEEEEEETTT-----TEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHH
T ss_pred HHHhCCCeEEEEEEEEEEEEEEecCccc-----cCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHH
Confidence 8666676667788899999988642100 001123356788999999999998752 56787 578999999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 419 ~~~l~~l~~~l~~ 431 (433)
T 1zod_A 419 DLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 28
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.9e-49 Score=378.33 Aligned_cols=369 Identities=25% Similarity=0.359 Sum_probs=305.8
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.+|++|+||.++++++++||+||++++++.+++++.... .++.+...++++++++.+ +.++
T Consensus 38 ~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~ 116 (420)
T 2pb2_A 38 PADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDAT-FAER 116 (420)
T ss_dssp -CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHS-SCSE
T ss_pred CCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCe
Confidence 3588999999999999999999999999999999999999999999999875322 356788999999999998 4789
Q ss_pred EEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
++|++||++|++.++++++.+ +++++||+++++||+....+....|.......+. + ....+..++++
T Consensus 117 v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~-----p--~~~~~~~~~~~ 189 (420)
T 2pb2_A 117 VLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFG-----P--KPADIIHVPFN 189 (420)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSS-----S--CCSCEEEECTT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCC-----C--CCCCeEEecCC
Confidence 999999999999999987654 4567899999999999887777666532221110 0 01235667778
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|+++|+++++|.+.++.+++++|+++|++||++||+||+|+|| ++|..+..+.+++.||++
T Consensus 190 d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 190 DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 9999999886 478999999999888888888889999999999999999999999999 888776667788889999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
||||++++|+|+|++++++++++.+.. ..++.+++.++++++++.++++.++++++.++++++.+++++.|+++...
T Consensus 267 t~sK~l~~G~~iG~~~~~~~l~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 267 TSAKALGGGFPVSAMLTTQEIASAFHV---GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECGGGGTTSCCEEEEECHHHHTTCC-------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEhHHHHHhhcC---CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888777653 23556889999999999999998877778899999999999999887555
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~ 405 (411)
++....+++.|+++++++.... .....++.+.|.++||++.+++.+.+|++ +.+|++++++++++|+
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPKY-----------KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGGG-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEecceEEEEEECCCc-----------hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6766667788999999885310 01236788999999999999876678874 7899999999999999
Q ss_pred HHHHh
Q 015230 406 KVLRQ 410 (411)
Q Consensus 406 ~~~~~ 410 (411)
+++++
T Consensus 413 ~~l~~ 417 (420)
T 2pb2_A 413 QAVGK 417 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 29
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=9.5e-50 Score=383.42 Aligned_cols=365 Identities=21% Similarity=0.288 Sum_probs=300.9
Q ss_pred EEeecCcEEEe-cCCCEEEeccCCccccccCCCcHHHH-H-HHHH---HHHcCCCC--CCCCHHHHHHHHHHHhhCC--C
Q 015230 22 FDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVL-A-ALGE---TMKKGTSF--GAPCLLENVLAEMVISAVP--S 91 (411)
Q Consensus 22 ~~~~~g~~~~~-~~g~~~~d~~~~~~~~~~g~~~~~v~-~-a~~~---~l~~~~~~--~~~~~~~~~l~~~l~~~~~--~ 91 (411)
+.+++|+++|| .+|++|+||.++++++++||+||+++ + |+.+ +++.+..+ .+..+...++++.+++.++ +
T Consensus 39 ~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~ 118 (449)
T 2cjg_A 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA 118 (449)
T ss_dssp TTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT
T ss_pred EeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 35999999999 99999999999999999999999999 9 9999 88775433 3677888999999999885 6
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccC------------CcEEEEEeCCcCCCchhhhhhcCC-CCcccCCCCCCCCCCCC
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGA 158 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~------------~~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 158 (411)
.++|+|++||++|++.|+++++.+++ +++||+++++||+.+..++.+.+. +.....+.. .
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-------~ 191 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPK-------F 191 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCC-------C
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCC-------C
Confidence 88999999999999999998765543 789999999999998887777664 111111110 0
Q ss_pred CCceeecCCCC---------------HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 159 TYETLTAPFND---------------VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 159 ~~~~~~~~~~d---------------~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
...+..++++| ++++++.++++.+++++|++||+++++|.+.++++++++|+++|++||++||+|
T Consensus 192 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D 271 (449)
T 2cjg_A 192 DWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD 271 (449)
T ss_dssp CCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 12344455544 344888887554689999999999999999999999999999999999999999
Q ss_pred cccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHH
Q 015230 224 EVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKR 300 (411)
Q Consensus 224 e~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~ 300 (411)
|+|+|| ++|.++..+.+++.||++|+||++ |+||+++++++++.+.+ .....+++|+++++++++++.++++.
T Consensus 272 Ev~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~ 347 (449)
T 2cjg_A 272 EVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEV 347 (449)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred ccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 999999 888877777888999999999999 79999999888776432 11234667899999999999999998
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHhcCC-ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
++++++.++++++.++++++|+++...++. ...+++.|+++++++.. .....++.+.|.++||++.
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~v~ 414 (449)
T 2cjg_A 348 IEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT-------------TADRDELIRQLWQRAVIVL 414 (449)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECE
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC-------------hHHHHHHHHHHHHCCeEEe
Confidence 877788999999999999999998666775 66778889999987732 2234678999999999999
Q ss_pred cCCCcceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 380 PSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++.+.+|+ ++.+|++++++++++|++++++
T Consensus 415 ~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 415 PAGADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 987677887 6789999999999999999875
No 30
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=1.1e-48 Score=376.78 Aligned_cols=384 Identities=21% Similarity=0.288 Sum_probs=303.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 93 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~-~~~~~~~~~l~~~l~~~~~-~~~ 93 (411)
.|+++.+++|+++||.+|++|+||.++++++++||.||++++++.+++++.. .+ .+..+...++++.+++.++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 4889999999999999999999999999999999999999999999998742 22 5678888999999999987 788
Q ss_pred EEEEeCChHHHHHHHHHHHHhcc------CCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecC
Q 015230 94 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 166 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 166 (411)
+|+||+||++|++.++++++.+. ++++||+++++||+....+....+.......+ +...+.........+..+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 191 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNA 191 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGT
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCc
Confidence 99999999999999999876543 67899999999999887777666532211100 000010000000000000
Q ss_pred C--CC--------HHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 167 F--ND--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 167 ~--~d--------~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
+ -| ++++++.+++.. +++++|++||+++++|.+.++++++++|+++|++||++||+||+|++| ++|..
T Consensus 192 ~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 192 YSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp TCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred cccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 0 04 899999987532 478999999999889999999999999999999999999999999999 88876
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCC------CcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG------PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~------~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
+..+.+++.||++|+||++++| +|+|++++++++++.+.... ...++.|++.++++++++.++++.++++++.
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~ 351 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLV 351 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHH
Confidence 6777888899999999999988 99999999999988886431 1235568899999999999999988777899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCccee
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF 387 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~ 387 (411)
++++++.++++++|+++ ..++....+++.|+++++++..... ....+...+.+.|.++||++.+++ +.+|
T Consensus 352 ~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~--------~~~~~~~~~~~~l~~~Gv~v~~~g-~~iR 421 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDG--------DAIVRPFEAGMALWKAGFYVRFGG-DTLQ 421 (449)
T ss_dssp HHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTT--------BSSHHHHHHHHHHHHHTEECEEET-TEEE
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCcc--------cccccHHHHHHHHHHCCcEEecCC-CEEE
Confidence 99999999999999874 3355555667889999999853210 000012368888899999999976 6788
Q ss_pred ee--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 388 TS--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 388 ~~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
++ +.+|++++++++++|+++++++
T Consensus 422 is~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 422 FGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 85 7899999999999999998764
No 31
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=2.3e-47 Score=363.05 Aligned_cols=371 Identities=25% Similarity=0.362 Sum_probs=314.6
Q ss_pred CCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHhhCCCC
Q 015230 15 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSI 92 (411)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~ 92 (411)
.++.|+++.+++|+++||.+|++|+||.++++++++||+||++.+++.++++.... ..++.+...++++++++.+ +.
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~ 96 (406)
T 4adb_A 18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FA 96 (406)
T ss_dssp CCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-SC
T ss_pred cCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-CC
Confidence 35568999999999999999999999999999999999999999999999987432 3456788899999999998 56
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (411)
+++++|+||++|++.++++++.+ +++++|++.+++||+....+....+.......+.. ....+..++
T Consensus 97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 169 (406)
T 4adb_A 97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP-------LPADIRHAA 169 (406)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS-------CCSSEEEEC
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC-------CCCCceEeC
Confidence 69999999999999999976554 66789999999999998888777765433211110 123566778
Q ss_pred CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcc
Q 015230 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD 245 (411)
Q Consensus 167 ~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d 245 (411)
++|++++++.++ +++++|+++|+|+++|++.++.+.+++|.++|++||++||+||+|+|| +.|..+..+.++..+|
T Consensus 170 ~~d~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (406)
T 4adb_A 170 YNDINSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246 (406)
T ss_dssp TTCHHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred CCcHHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC
Confidence 889999998876 578999999999999988878888999999999999999999999999 8887777778888999
Q ss_pred hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 015230 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 246 ~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
++||||++++|+|+||+++++++++.+.. .....+++.++++++++.++++.++.++++++++++.+++++.|+++.
T Consensus 247 ~~t~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 323 (406)
T 4adb_A 247 LLTTAKALGGGFPVGALLATEECARVMTV---GTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTIN 323 (406)
T ss_dssp EEEECGGGGTTSCCEEEEECHHHHHTCCT---TSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCCCCeEEEEEcHHHHhhhcc---CCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988774 335568899999999999999988767888999999999999999987
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITA 403 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~ 403 (411)
..++.....++.|+++++++.... .....++.+.|.++||.+.+++.+.+|+ ++.+|++++++++++
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~ 392 (406)
T 4adb_A 324 HRYGLFSEVRGLGLLIGCVLNADY-----------AGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR 392 (406)
T ss_dssp HHHCCEEEEEEETTEEEEEECTTT-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HhCCCceEEEEEEEEEEEEEeCCc-----------HHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 767777777888999999985421 0123688999999999999988778888 788999999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 393 l~~~l~~ 399 (406)
T 4adb_A 393 FAAACEH 399 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 32
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=3.1e-47 Score=364.58 Aligned_cols=372 Identities=24% Similarity=0.332 Sum_probs=296.7
Q ss_pred CCeE-EEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC--C-CCCCHHHHHHHHHHHhhCC-CC
Q 015230 18 QPIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--F-GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 18 ~~~~-~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~--~-~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
.|++ +.+++|+++||.+|+.|+||.++.+++++||.+|++++++.++++.... + .++.+...++++.+++.++ +.
T Consensus 24 ~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (429)
T 1s0a_A 24 LPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL 103 (429)
T ss_dssp CCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC
T ss_pred CCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4555 8999999999999999999999999899999999999999999987432 1 4567778999999999998 78
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccC-----CcEEEEEeCCcCCCchhhhhhcCCCC-cccCC-CCCCCCCCCCCCceee-
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLT- 164 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~-----~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~- 164 (411)
++|+||+||++|++.++++++.+.+ +++||+++++||+....+....+... ....+ +...+. ..+.
T Consensus 104 ~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 177 (429)
T 1s0a_A 104 ECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN------LFAPA 177 (429)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC------EEECC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc------eEeCC
Confidence 9999999999999999997654433 78999999999998776665554321 00000 000000 0111
Q ss_pred --------cCCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC
Q 015230 165 --------APFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 234 (411)
Q Consensus 165 --------~~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~ 234 (411)
..+.|++++++.++++++++++|+++|+ +|++|.+.++++++++|.++|++||++||+||+|+|| +.|..
T Consensus 178 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~ 257 (429)
T 1s0a_A 178 PQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKL 257 (429)
T ss_dssp CCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchH
Confidence 1124789999998854457899999999 8889998988999999999999999999999999999 77776
Q ss_pred ccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCC--CCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015230 235 GAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 311 (411)
Q Consensus 235 ~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~--~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~ 311 (411)
+..+..++.||++|+||++++| +|+||+++++++++.+... ....+..+++.++++++++.++++.++++++.++++
T Consensus 258 ~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~ 337 (429)
T 1s0a_A 258 FACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVA 337 (429)
T ss_dssp SGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677778889999999999999 9999999999998888642 111245688999999999999999887777888999
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS-- 389 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~-- 389 (411)
++.++++++|+++.. ++....+++.|+++++++.+. .+...+.+.|.++||++.+.+ +.+|++
T Consensus 338 ~~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-------------~~~~~l~~~l~~~Gi~v~~~~-~~iRis~~ 402 (429)
T 1s0a_A 338 DIEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-------------VNMAALQKFFVEQGVWIRPFG-KLIYLMPP 402 (429)
T ss_dssp HHHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-------------BCHHHHHHHHHHTTEECCCBT-TEEEECCC
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-------------ccHHHHHHHHHHCCCEEeccC-CEEEEECC
Confidence 999999999987532 454445667789999988431 112578888999999999864 567875
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++++++++++|++++++
T Consensus 403 ~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 403 YIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 789999999999999998754
No 33
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.4e-47 Score=369.85 Aligned_cols=371 Identities=18% Similarity=0.263 Sum_probs=291.9
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHc-----CCCCC--CCCHHHHHHHHHHHhhCC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFG--APCLLENVLAEMVISAVP 90 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-----~~~~~--~~~~~~~~l~~~l~~~~~ 90 (411)
.++.+.+++|+++||.||++|+||.+++++.++||+||++++|+.+++.. ...++ ...++.+++++.+.+..+
T Consensus 45 ~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~ 124 (472)
T 1ohv_A 45 FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAP 124 (472)
T ss_dssp CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCC
T ss_pred CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCC
Confidence 36678999999999999999999999999999999999999999998643 11222 136677888888888776
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhc-----------c-------------C--CcEEEEEeCCcCCCchhhhhhcCCCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAF-----------T-------------G--RERIIKFEGCYHGHADPFLVKAGSGV 143 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~-----------~-------------~--~~~vi~~~~~~~~~~~~~~~~~g~~~ 143 (411)
+.++++|++||+||++.||++++.+ + + +++||+++++|||.+..++.+++...
T Consensus 125 ~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~ 204 (472)
T 1ohv_A 125 KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKA 204 (472)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCH
T ss_pred CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCcc
Confidence 7889999999999999999998643 1 3 48999999999999999988877543
Q ss_pred c-ccCCCCCC----CCCCCCCCc-eeecCCC------CHHHHHHHHHcCCC---cEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 144 A-TLGLPDSP----GVPKGATYE-TLTAPFN------DVSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 144 ~-~~~~~~~~----~~~~~~~~~-~~~~~~~------d~~~l~~~~~~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
. ....+... .++. ...+ ...++++ |+++++++++.+.+ ++++|++||+++++|.+.++++|+++
T Consensus 205 ~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~ 283 (472)
T 1ohv_A 205 IHKIDIPSFDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRK 283 (472)
T ss_dssp HHHTTSCCCCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHH
T ss_pred ccccCCCCCCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHH
Confidence 2 11111110 0100 0000 0001122 68889998875322 78999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEecccccc-ccccCccccccCCC--cchhhhhhh-ccCCcccccccccHHHHHHhcCCCCcccccCC
Q 015230 209 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKI-IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 284 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~--~d~~~~sK~-~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~ 284 (411)
|+++|++||++||+||+|+|| ++|.++..+.+++. ||++||||+ ++||+++ ++++ . ......+++|+
T Consensus 284 l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~~~-----~~~~-~---~~~~~~~~~T~ 354 (472)
T 1ohv_A 284 LRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFH-----KEEF-R---PNAPYRIFNTW 354 (472)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEEE-----CGGG-S---CSSSSSSCCSS
T ss_pred HHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCccC-----chhh-c---ccccccccCcc
Confidence 999999999999999999999 88877778888886 999999999 6765543 4443 1 22244567799
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC-CceEEeeecceEEEEEecCCCCCcchhcccchHH
Q 015230 285 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 285 ~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
++++++++++.++++.+.++++.++++++.++++++|+++...++ ....+++.|+++++++.+ ...
T Consensus 355 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~-------------~~~ 421 (472)
T 1ohv_A 355 LGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPD-------------ESI 421 (472)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSS-------------HHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCC-------------hhH
Confidence 999999999999999887788999999999999999998866666 366677889999987631 224
Q ss_pred HHHHHHHHHHcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 364 FARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...+.+.|.++||++.+++.+.+|+ ++.+|+++|++++++|+++++++
T Consensus 422 ~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 422 RNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999976667777 78999999999999999998764
No 34
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.9e-46 Score=354.94 Aligned_cols=359 Identities=27% Similarity=0.411 Sum_probs=287.5
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCC-cHHHHHHHHHHHHcCCCC---CCCCHHHHHHHHHHHhhCC-C-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISAVP-S- 91 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~-~~~v~~a~~~~l~~~~~~---~~~~~~~~~l~~~l~~~~~-~- 91 (411)
.|+++.+++|+++||.+|++|+||.++.+++++||+ ||++++++.++++....+ .++.+...++++.+++.++ .
T Consensus 24 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 103 (419)
T 2eo5_A 24 FPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNF 103 (419)
T ss_dssp CCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSS
T ss_pred CCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCc
Confidence 588899999999999999999999999988899997 999999999999875332 3677888999999999997 4
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCC-CCCCCCCCCCCCceeecCCC-
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGL-PDSPGVPKGATYETLTAPFN- 168 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~- 168 (411)
+++|+||+||++|++.++++++.++ +++||+++++||+.+..+....+.. ...... +.. ..+..++++
T Consensus 104 ~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~ 174 (419)
T 2eo5_A 104 QKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFM--------PGVIHVPYPN 174 (419)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCC--------TTEEEECCCC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCccccccccCCCC--------CCCEEECCCc
Confidence 6899999999999999999776555 7899999999999988877766542 111111 000 012222221
Q ss_pred --------------------CHHHHH-HHHHcCC--CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 169 --------------------DVSALE-NLFENNK--GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 169 --------------------d~~~l~-~~~~~~~--~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
|+++++ +.+++.. +++++|++||+++++|.+.++++++++|+++|++||++||+||+
T Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~ 254 (419)
T 2eo5_A 175 PYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254 (419)
T ss_dssp SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 467888 8887421 46889999999888998888899999999999999999999999
Q ss_pred cccc-ccccCccccccCCCcchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc
Q 015230 226 MTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303 (411)
Q Consensus 226 ~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~ 303 (411)
|++| +.|..+..+.+++.||++||||++++| +|+||++++++++ .+ . ..+..+++.++++++++.++++.+++
T Consensus 255 ~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~---~~~~~t~~~n~~~~~aa~aal~~~~~ 329 (419)
T 2eo5_A 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P---GMHSNTFGGNALACAIGSKVIDIVKD 329 (419)
T ss_dssp TTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC----------CCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C---cccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 888766677778899999999999999 9999999988876 54 2 23556899999999999999987654
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 383 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 383 (411)
++++++++.+++.+.|+++ ...+++.|+++++++.. ...... +.+.|.++||++.+++.
T Consensus 330 --~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~------------~~~~~~-~~~~l~~~Gv~v~~~~~ 388 (419)
T 2eo5_A 330 --LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE------------KKVRDR-IIGESFKRGLLLLPAGR 388 (419)
T ss_dssp --HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC------------HHHHHH-HHHHHHHTTEECEEETT
T ss_pred --HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec------------CccHHH-HHHHHHHCCCEEecCCC
Confidence 7888888888888888654 23456779999987731 112245 88889999999999866
Q ss_pred cceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 384 EAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 384 ~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+|+ ++.+|++++++++++|+++++++
T Consensus 389 ~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 389 SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 67888 56889999999999999998764
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=3.9e-46 Score=352.89 Aligned_cols=364 Identities=25% Similarity=0.352 Sum_probs=305.5
Q ss_pred CCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCC
Q 015230 15 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSI 92 (411)
Q Consensus 15 ~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~ 92 (411)
....|+++.+++|+++||.+|++|+||.+++++.++||+||++.+++.++++..... .++.+...++++++++.++ .
T Consensus 15 ~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~ 93 (392)
T 3ruy_A 15 YHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN-K 93 (392)
T ss_dssp CCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT-C
T ss_pred CCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-C
Confidence 345689999999999999999999999999988999999999999999999874322 2456778899999998885 8
Q ss_pred CEEEEeCChHHHHHHHHHHHHhc--------cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceee
Q 015230 93 EMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 164 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~--------~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 164 (411)
+++++++||++|++.++++++.. ++++.|++..++||+....+....+......... . ....+..
T Consensus 94 ~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~ 166 (392)
T 3ruy_A 94 EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFG--P-----MLPGIIV 166 (392)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCC--S-----CCSSEEE
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccC--C-----CCCCCee
Confidence 89999999999999999987655 4577999999999999888877766533321111 0 1123566
Q ss_pred cCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC
Q 015230 165 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT 243 (411)
Q Consensus 165 ~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~ 243 (411)
++++|+++++++++ +++++|++++++|++|.+.++++++++|.++|++||++||+||+|++| +.|..+..+.++..
T Consensus 167 ~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 243 (392)
T 3ruy_A 167 IPYGDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVT 243 (392)
T ss_dssp ECTTCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred eCcccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCC
Confidence 78889999999887 479999999999999999999999999999999999999999999999 88877777888889
Q ss_pred cchhhhhhhccCC-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGII 322 (411)
Q Consensus 244 ~d~~~~sK~~~~G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 322 (411)
+|++++||+++|| +|+|++++++++++.+.. ...+.+++.++++++++.++++.+..++++++++++.+++++.|+
T Consensus 244 ~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 320 (392)
T 3ruy_A 244 PDMYILGKALGGGVFPISCAAANRDILGVFEP---GSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLK 320 (392)
T ss_dssp CSEEEECGGGGTTTSCCEEEEECHHHHTTCCT---TSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEchhhhCChhhhEEEEECHHHHhhhcc---CCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999998887763 335668899999999999999987768889999999999999987
Q ss_pred HHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHH
Q 015230 323 DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHT 400 (411)
Q Consensus 323 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~ 400 (411)
++. .+......+.|.++++.+.. +..++.+.|.++||.+.+++.+.+|++ +.+|+++++++
T Consensus 321 ~~~--~~~~~~~~~~g~~~~~~~~~---------------~~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~ 383 (392)
T 3ruy_A 321 EID--NPMITEVRGKGLFIGIELNE---------------PARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWA 383 (392)
T ss_dssp TCC--CTTEEEEEEETTEEEEEESS---------------CSHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHH
T ss_pred Hhc--CCCceEEEeeeeEEEEEEcc---------------hHHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHH
Confidence 652 24455667779999988743 126788999999999999887788885 78899999999
Q ss_pred HHHHHHHHH
Q 015230 401 ITAAEKVLR 409 (411)
Q Consensus 401 i~~l~~~~~ 409 (411)
+++|+++++
T Consensus 384 ~~~l~~~l~ 392 (392)
T 3ruy_A 384 FQKIKAVLS 392 (392)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998863
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=1e-44 Score=346.92 Aligned_cols=378 Identities=28% Similarity=0.441 Sum_probs=300.3
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHhhCCC-C-
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVPS-I- 92 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~-~- 92 (411)
.|+++.+++|+++||.+|++|+||.++.++.++||.+|++++++.++++.... ..++.....++++.+++.+++ .
T Consensus 23 ~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 102 (426)
T 1sff_A 23 HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFA 102 (426)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSC
T ss_pred CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccc
Confidence 38889999999999999999999999987779999999999999999887422 124577788999999999843 4
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCC-cccCCCCCCCCCCCCCCceeecCC----
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV-ATLGLPDSPGVPKGATYETLTAPF---- 167 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 167 (411)
+++++|+||++|++.++++++.+.++++|++.+++||+....+....|... ..... ... ...+..++.
T Consensus 103 ~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~--~~~-----~~~v~~v~~~~~~ 175 (426)
T 1sff_A 103 KKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGM--GLM-----PGHVYRALYPCPL 175 (426)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTS--CCC-----CSSEEEECCCBGG
T ss_pred cEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCcccccccc--CCC-----CCCcEEeCCCccc
Confidence 899999999999999999776666667999999999998877666655421 00000 000 001211221
Q ss_pred -C-----CHHHHHHHHHc--CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccc
Q 015230 168 -N-----DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE 238 (411)
Q Consensus 168 -~-----d~~~l~~~~~~--~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~ 238 (411)
+ |++++++.+++ .++++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+
T Consensus 176 ~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 255 (426)
T 1sff_A 176 HGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAME 255 (426)
T ss_dssp GTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred cccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhh
Confidence 1 68899988874 12478999999998888888999999999999999999999999999999 777766667
Q ss_pred ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 015230 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 318 (411)
Q Consensus 239 ~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (411)
..+..+|++||||++++|+|+||+++++++++.+.. .....+++.++++++++.++++.+.++++.++++++.++++
T Consensus 256 ~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~ 332 (426)
T 1sff_A 256 QMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAP---GGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLK 332 (426)
T ss_dssp GTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCT---TSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhcc---CCcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 778889999999999999999999999998887763 23456888999999999999998877788999999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSS 394 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~ 394 (411)
++|+++...++.....++.|+++++++.+... ...+......++.+.|.++||++.++. .+.+|++ +.+++
T Consensus 333 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~ 407 (426)
T 1sff_A 333 DGLLAIAEKHPEIGDVRGLGAMIAIELFEDGD-----HNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIED 407 (426)
T ss_dssp HHHHHHHHTCTTEEEEEEETTEEEEEEBGGGC-----TTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCH
T ss_pred HHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCH
Confidence 99998765566555566679999999853210 001223456788999999999999976 3567874 47899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++++++++|++++++
T Consensus 408 ~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 408 AQIRQGLEIISQCFDE 423 (426)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=1.4e-44 Score=342.67 Aligned_cols=366 Identities=26% Similarity=0.364 Sum_probs=297.1
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|+++||.+|+.|+||.++++++++|+.+|++++++.++++..... .++.+...++++++++.++ .++
T Consensus 21 ~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~~~ 99 (397)
T 2ord_A 21 RFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF-GGK 99 (397)
T ss_dssp CCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT-SCE
T ss_pred CCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC-CCe
Confidence 4689999999999999999999999999888999999999999999999874321 2456788999999999884 789
Q ss_pred EEEeCChHHHHHHHHHHHHhc-----cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~-----~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (411)
+++++||++|+..++++++.+ +++++|++.+++||+....+....|.......+ +. ...+..++++
T Consensus 100 v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 171 (397)
T 2ord_A 100 VFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPL--------VPGFEYFEFN 171 (397)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSC--------CTTEEEECTT
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCC--------CCCeeEecCC
Confidence 999999999999999876443 456789999999999887666555542111110 10 1235667777
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 247 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~ 247 (411)
|++++++.++ +++++|++++++|++|.+.++.+.+++|.++|++||++||+||+|+|+ +.|.......++..+|++
T Consensus 172 d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~ 248 (397)
T 2ord_A 172 NVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL 248 (397)
T ss_dssp CHHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee
Confidence 9999998886 378999999999999986777788999999999999999999999988 777655555667778999
Q ss_pred hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 015230 248 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
||||++++|+|+||++++++++ .+.. .....+++.++++++++.++++.+.+++++++++++.+++.+.|+++...
T Consensus 249 s~sK~~~~G~r~G~~~~~~~~~-~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 324 (397)
T 2ord_A 249 TTAKGLGGGVPIGAVIVNERAN-VLEP---GDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEE 324 (397)
T ss_dssp EECGGGGTTSCCEEEEECSTTC-CCCT---TSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCcCeEEEEEchHhc-ccCC---CCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888765 5442 23456888999999999999998877788999999999999999887544
Q ss_pred cCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 405 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~ 405 (411)
++......+.|.++++++... ....++.+.|.++||.+.+++.+.+|++ +..+++++++++++|+
T Consensus 325 ~~~~~~~~~~g~~~~~~~~~~-------------~~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~ 391 (397)
T 2ord_A 325 YDVVADVRGMGLMIGIQFREE-------------VSNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLK 391 (397)
T ss_dssp CTTEEEEEEETTEEEEEECTT-------------SCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEeEEEEEEECCh-------------HHHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHH
Confidence 565545567789999988431 1136788999999999999876678875 6789999999999999
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
++++++
T Consensus 392 ~~l~~~ 397 (397)
T 2ord_A 392 KVLQGI 397 (397)
T ss_dssp HHHHTC
T ss_pred HHHhhC
Confidence 998763
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=4.4e-43 Score=332.28 Aligned_cols=363 Identities=30% Similarity=0.432 Sum_probs=294.2
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHhhCC-CC
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SI 92 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~-~~ 92 (411)
...|+++.++.|+++||.+|+.|+||.++.+++++|+.+|++++++.++++..... .++.+...++++++++.++ +.
T Consensus 25 ~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 104 (395)
T 1vef_A 25 NKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPEL 104 (395)
T ss_dssp CCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTE
T ss_pred CCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCc
Confidence 34688999999999999999999999999888899999999999999999874321 2467888999999999987 67
Q ss_pred CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccC-CCCCCCCCCCCCCceeecCCCCHH
Q 015230 93 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 93 ~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 171 (411)
+++++++||++|+..+++.++.+.++++||+.+++||+....+....|....... .+. ..++..++++|++
T Consensus 105 ~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~ 176 (395)
T 1vef_A 105 NRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVE 176 (395)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHH
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHH
Confidence 8999999999999999987654467789999999999987766655554322110 011 1134455667999
Q ss_pred HHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhh
Q 015230 172 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG 250 (411)
Q Consensus 172 ~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~s 250 (411)
++++.++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+..+..+|++|||
T Consensus 177 ~l~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~s 253 (395)
T 1vef_A 177 ALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA 253 (395)
T ss_dssp HHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC
T ss_pred HHHHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEc
Confidence 9999886 368999999998889998888999999999999999999999999988 667655566677789999999
Q ss_pred hhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 251 KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 251 K~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
|++++|+|+|++++++++++.+.. .....+++.++++++++.++++.+..+++.++++++.+++.+.|+++.. +.
T Consensus 254 K~~~~g~~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~ 328 (395)
T 1vef_A 254 KALGGGVPLGVAVMREEVARSMPK---GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PK 328 (395)
T ss_dssp GGGGTTSSCEEEEEEHHHHHTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TT
T ss_pred ccccCCCceEEEEehHHHHhhhcc---CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--Cc
Confidence 999999999999999888887764 2245578889999999999998876667888999999999998877521 33
Q ss_pred ceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCCcceee--ecCCCHHHHHHHHHHHHHH
Q 015230 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 331 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~~~~--~~~~t~~~i~~~i~~l~~~ 407 (411)
....++.|.++++++... ..++.+.|. ++||.+.+++.+.+|+ ++.+|++++++++++|+++
T Consensus 329 ~~~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 329 IREVRGMGLMVGLELKEK---------------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp EEEEEEETTEEEEEESSC---------------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEEEEcCh---------------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 334556788999988421 257888888 8999999987677888 4578999999999999987
Q ss_pred HH
Q 015230 408 LR 409 (411)
Q Consensus 408 ~~ 409 (411)
++
T Consensus 394 l~ 395 (395)
T 1vef_A 394 LA 395 (395)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=9.9e-41 Score=313.87 Aligned_cols=357 Identities=27% Similarity=0.388 Sum_probs=282.9
Q ss_pred CCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHHHHhhCCCCCE
Q 015230 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEM 94 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~ 94 (411)
..|+++.+++|++++|.+|+.|+||.++...+++||.+|++++++.+.++... ...|+.....++.+++++.++-+++
T Consensus 9 ~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~ 88 (375)
T 2eh6_A 9 RLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGK 88 (375)
T ss_dssp CEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEE
T ss_pred CCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCe
Confidence 45889999999999999999999999997767889899999999999988642 1235566778899999998853389
Q ss_pred EEEeCChHHHHHHHHHHHHhcc-----CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 95 VRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 95 v~~~~~g~~a~~~al~~~~~~~-----~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+++|+||++|+..++++++.+. ++++|++.+++||+....+....+......... +. ...+..+++.|
T Consensus 89 v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~d 161 (375)
T 2eh6_A 89 VFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFE-----PL--VPGFSYAKLND 161 (375)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTC-----SC--CSSEEEECTTC
T ss_pred EEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCC-----CC--CCCceeCCCch
Confidence 9999999999999998654333 348999999999998877666655432111110 00 11355566679
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhh
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 248 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~ 248 (411)
++++++.++ +++++|+++|+++++|.+.++++++++|.++|++||+++|+||+|++| +.+..+..+.++..+|+++
T Consensus 162 ~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s 238 (375)
T 2eh6_A 162 IDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238 (375)
T ss_dssp HHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE
Confidence 999988776 368999999999999999888999999999999999999999999988 6664445556677789999
Q ss_pred hhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 249 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 249 ~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
|||++++|+|+|++++++++++.+.. .....+++.++++++++.++++.+. ++.++++++.+++.+.|+++
T Consensus 239 ~SK~~~~g~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---- 309 (375)
T 2eh6_A 239 LAKGLGGGVPIGAILAREEVAQSFTP---GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL---- 309 (375)
T ss_dssp ECGGGGTTSCCEEEEEEHHHHTTCCT---TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT----
T ss_pred EcccccCCCCeEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH----
Confidence 99999999999999999888877764 2244577889999999988888765 67788888888888888775
Q ss_pred CCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
+. ....+.|+++++++... ..++.+.|.++||.+.+++.+.+|++ ...+++++++++++|++
T Consensus 310 ~~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 310 GK-GKVKGRGLMLGLELERE---------------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp TS-SEEEEETTEEEEECSSC---------------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred hc-CCceEEEEEEEEEEcCc---------------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 32 23456789999987421 15788889999999998766678885 57899999999999987
Q ss_pred HH
Q 015230 407 VL 408 (411)
Q Consensus 407 ~~ 408 (411)
++
T Consensus 374 ~l 375 (375)
T 2eh6_A 374 IL 375 (375)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1e-37 Score=297.80 Aligned_cols=368 Identities=11% Similarity=0.015 Sum_probs=259.3
Q ss_pred CccCcccccccCCCCCeEEEeecCcEEEecC--CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC-CCCHHHH
Q 015230 4 GVNSPVRAFKSVGGQPIVFDSVKGSHMWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLEN 79 (411)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~-~~~~~~~ 79 (411)
|.+-..+.|+..++++++..++.|+++||.+ |+.|+||..+ .+....+|++++++.++++... .|. ...++++
T Consensus 27 g~~~~~~~m~~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~ 103 (421)
T 3l8a_A 27 GQQMGRGSMGRYDFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQ 103 (421)
T ss_dssp -----------CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHH
T ss_pred ccccChhhhhhccCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHH
Confidence 3333344555567788899999999999998 8999999776 4444489999999999998732 232 2367788
Q ss_pred HHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCC
Q 015230 80 VLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPK 156 (411)
Q Consensus 80 ~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 156 (411)
++++++.+.++ .+++|+||+|+++|++.+++.+ ..+++.|++..++||+....+. ..|..+..++.....+
T Consensus 104 ~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~-~~g~~~~~~~~~~~~~--- 177 (421)
T 3l8a_A 104 AVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF--SEKGDAVLINSPVYYPFARTIR-LNDHRLVENSLQIING--- 177 (421)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHH-HTTEEEEEEECEEETT---
T ss_pred HHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHH-HCCCEEEeccccccCC---
Confidence 99999998775 5789999999999999999864 3455789999999998554433 3343333322210010
Q ss_pred CCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc
Q 015230 157 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 235 (411)
Q Consensus 157 ~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~ 235 (411)
.+. .|++++++++++ +++++|++++++|++|.+ .+++.+++|+++|++||++||+||+|+++ +.|...
T Consensus 178 -----~~~---~d~~~le~~i~~--~~~~~vil~~p~nptG~~-~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 246 (421)
T 3l8a_A 178 -----RFE---IDFEQLEKDIID--NNVKIYLLCSPHNPGGRV-WDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH 246 (421)
T ss_dssp -----EEE---CCHHHHHHHHHH--TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred -----Cee---eCHHHHHHHhhc--cCCeEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 001 189999999974 368888888888888854 45666999999999999999999999988 666321
Q ss_pred -cc-----cccCCCcchhhhhhhcc-CCccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CC
Q 015230 236 -AQ-----EYFGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PG 305 (411)
Q Consensus 236 -~~-----~~~~~~~d~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~ 305 (411)
.+ +..+..+++.|+||+++ +|+|+|+++++ +++.+.+.... ....+++.++++++++.++++..++ ++
T Consensus 247 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~--~~~~~~~~n~~~~~a~~aal~~~~~~~~~ 324 (421)
T 3l8a_A 247 HSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQ--LANNQHEVPTVGMIATQAAFQYGKPWLEE 324 (421)
T ss_dssp CCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH--HHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred ccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHH--HhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence 11 12344566889999998 79999999887 88888776311 1233558899999999999875332 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-eEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC-
Q 015230 306 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ- 382 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~- 382 (411)
++++++++.+++++.|+++ +......+.|. +.|+++..... +..++.+.|.+ +||++.++.
T Consensus 325 ~~~~~~~~~~~l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~ 388 (421)
T 3l8a_A 325 LKTVIEGNIKLVIKELEAK----TKIKVMEPEGTYLVWLDFSAYAI------------AQPQLSEKLQNEAKVVLNDGAH 388 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH----CSCEEECCSBSSEEEEECGGGTC------------CTTHHHHHHHHTTCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHhC----CCceEeCCCeeEEEEEeccccCC------------CHHHHHHHHHHhCCEEEECchh
Confidence 5566666677777766655 44444455455 55587753211 12567888875 599998853
Q ss_pred -----CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 383 -----FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 383 -----~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+.+|+++.++++++++++++|+++++
T Consensus 389 f~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 389 FGKEGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp GCGGGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred hCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 345899888999999999999999875
No 41
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=2.3e-35 Score=281.90 Aligned_cols=338 Identities=19% Similarity=0.190 Sum_probs=255.3
Q ss_pred EEE-eecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCCC------CCCHHHHHHHHHHHhhCCC
Q 015230 21 VFD-SVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG------APCLLENVLAEMVISAVPS 91 (411)
Q Consensus 21 ~~~-~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~~------~~~~~~~~l~~~l~~~~~~ 91 (411)
.+. +++|++++| +|++++||.++ +++|+ .+|++++++.++++. +..++ +..+...++.+.+++.++
T Consensus 49 ~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g- 123 (427)
T 2w8t_A 49 VMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG- 123 (427)
T ss_dssp CCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT-
T ss_pred eccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC-
Confidence 566 899999999 99999999999 68895 899999999999987 32222 245778888899988884
Q ss_pred CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHH
Q 015230 92 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 92 ~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 171 (411)
.++++++++|++|+..+++. +.++++.|+.+..+|+.........|. .+..++++|++
T Consensus 124 ~~~~i~~~sGs~a~~~al~~---l~~~gd~vl~~~~~h~~~~~~~~~~g~-------------------~~~~~~~~d~~ 181 (427)
T 2w8t_A 124 TTGAIVFSTGYMANLGIIST---LAGKGEYVILDADSHASIYDGCQQGNA-------------------EIVRFRHNSVE 181 (427)
T ss_dssp CSEEEEESCHHHHHHHHHHH---HSCTTCEEEEETTCCHHHHHHHHHSCS-------------------EEEEECTTCHH
T ss_pred CCceEEecCcHHHHHHHHHH---hcCCCCEEEECCcccHHHHHHHHHcCC-------------------eeEEeCCCCHH
Confidence 55788888999999998875 334444444455555544444444333 34556667999
Q ss_pred HHHHHHHcCCC-cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--cccCccccccCCCcc--
Q 015230 172 ALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFGVTPD-- 245 (411)
Q Consensus 172 ~l~~~~~~~~~-~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~~~~~~~~~~~~d-- 245 (411)
++++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||++||+||+|+++ . .|.. ..+.+++.++
T Consensus 182 ~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~d 256 (427)
T 2w8t_A 182 DLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQID 256 (427)
T ss_dssp HHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCS
T ss_pred HHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCc
Confidence 99999986433 6899999999999999988 999999999999999999999865 2 2322 3344555555
Q ss_pred --hhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHH
Q 015230 246 --LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGII 322 (411)
Q Consensus 246 --~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~ 322 (411)
+.|+||+++ ++.||+++++++++.+......+. .+.+.++++++++.++++.+.. ++++++++++.+++++.|+
T Consensus 257 i~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~ 333 (427)
T 2w8t_A 257 FVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYI-FTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLK 333 (427)
T ss_dssp EEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHH-SSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhc--cCCCEEEeCHHHHHHHHHhccccc-ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 669999997 356999999888888764322222 2567888999998899998866 6788899999999999998
Q ss_pred HHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeec--CC
Q 015230 323 DAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 392 (411)
Q Consensus 323 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~--~~ 392 (411)
++ ++...... .|.++++.+. +.....++.+.|.++||++.++.. ..+|+++ .+
T Consensus 334 ~~----g~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~ 396 (427)
T 2w8t_A 334 AM----GFRLGTETCDSAIVAVMLE-------------DQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEH 396 (427)
T ss_dssp HH----TCEESCSSCCSSEEEEEES-------------SHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECCTTC
T ss_pred Hc----CCcccCCCCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCC
Confidence 86 32221123 5778888873 234457899999999999988743 3577754 46
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 015230 393 SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~ 410 (411)
|++++++++++|++++++
T Consensus 397 t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 397 TPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-34 Score=273.82 Aligned_cols=341 Identities=17% Similarity=0.246 Sum_probs=254.9
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccC-CCcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVP 90 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g-~~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~~ 90 (411)
+..+.+++|.+++| +|++|+||.++ +++| +.+|++.+++.++++... .+ .+..+...++.+++++.++
T Consensus 27 ~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~ 102 (399)
T 3tqx_A 27 ERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG 102 (399)
T ss_dssp CCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT
T ss_pred cccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC
Confidence 66788999999998 99999999999 8889 489999999999988721 11 1245667888888888885
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
. ++.+++++|++|+..+++.. ..+++.|++..+.|+ .+.......|. ++..+++.|+
T Consensus 103 ~-~~~i~~~sGt~a~~~~l~~~--~~~gd~v~~~~~~~~-~~~~~~~~~g~-------------------~~~~~~~~d~ 159 (399)
T 3tqx_A 103 T-DDTILYSSCFDANGGLFETL--LGPEDAIISDELNHA-SIIDGIRLCKA-------------------QRYRYKNNAM 159 (399)
T ss_dssp C-SEEEEESCHHHHHHTTHHHH--CCTTCEEEEETTCCH-HHHHHHHSCCS-------------------EEEEECTTCT
T ss_pred C-CcEEEECchHHHHHHHHHHh--cCCCCEEEECCcccH-HHHHHHHHcCC-------------------ceeEeCCCCH
Confidence 3 45666667899999988742 334455555555544 34333333333 3444555688
Q ss_pred HHHHHHHHcCCC---cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCccccccCC--
Q 015230 171 SALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGV-- 242 (411)
Q Consensus 171 ~~l~~~~~~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~~~~~~~~-- 242 (411)
+++++.+++... ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ++ . .+. ...+.+++
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~ 234 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR-GTPEYCGVAD 234 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-CHHHHHTCTT
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chHHhhCCCC
Confidence 899988886322 6889999999999999988 9999999999999999999994 65 2 222 23445555
Q ss_pred Ccchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-hc-CChHHHHHHHHHHHH
Q 015230 243 TPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELT 318 (411)
Q Consensus 243 ~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-~~-~~~~~~~~~~~~~~~ 318 (411)
.+|++ |+||+++ |++.||+++++++++.+......+. .+.+.++++++++.++++.+ .. ++++++++++.+++.
T Consensus 235 ~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 312 (399)
T 3tqx_A 235 RVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYL-FSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFR 312 (399)
T ss_dssp CCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHH-SSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCccee-ccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 56776 8999999 6788999999999888764222221 24577889999999998877 43 778888999999999
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeec-
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL- 390 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~- 390 (411)
+.|+++ ++... .+.|.++++.+. ...+..++.+.|.++||.+.++.+ +.+|+++
T Consensus 313 ~~L~~~----g~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 374 (399)
T 3tqx_A 313 AGMEKL----GFQLV-PGNHPIIPVMLG-------------DAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMS 374 (399)
T ss_dssp HHHHHH----TCCBC-CCSSSEEEEEEE-------------CHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECC
T ss_pred HHHHHc----CCCcC-CCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEee
Confidence 999887 32221 456888888873 334557899999999999996532 3578754
Q ss_pred -CCCHHHHHHHHHHHHHHHHhC
Q 015230 391 -AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 391 -~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+|++++++++++|+++++++
T Consensus 375 ~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 375 AVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 689999999999999998764
No 43
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=6.2e-35 Score=275.85 Aligned_cols=359 Identities=12% Similarity=0.063 Sum_probs=256.5
Q ss_pred CCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC-CCCHHHHHHHHHHHhhCC---
Q 015230 16 GGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP--- 90 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~-~~~~~~~~l~~~l~~~~~--- 90 (411)
+++ ++..+++|+++||.+|+.++||..+ .+....+|++++++.+++++.. .|+ ...++++++++++.+.++
T Consensus 8 ~f~-~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~ 83 (391)
T 3dzz_A 8 DFT-HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARP 83 (391)
T ss_dssp CCS-SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCC
T ss_pred ccc-hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 444 7788999999999999999999987 4444489999999999998742 232 246678899999988764
Q ss_pred CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCH
Q 015230 91 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 170 (411)
Q Consensus 91 ~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 170 (411)
.++++++|+|+++|+..+++.+ ..+++.|++..++|++.... ....|..+..++.....+ .+. .|+
T Consensus 84 ~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~--------~~~---~d~ 149 (391)
T 3dzz_A 84 KEDWCVFASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSV-IEGNGRRVISSDLIYENS--------KYS---VNW 149 (391)
T ss_dssp CGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHH-HHHTTCEEEECCCEEETT--------EEE---CCH
T ss_pred CHHHEEECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHH-HHHcCCEEEEeeeeecCC--------cee---ecH
Confidence 5789999999999999999864 44668899999999874443 334444333332210111 000 189
Q ss_pred HHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccCC-Ccc--
Q 015230 171 SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD-- 245 (411)
Q Consensus 171 ~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~~-~~d-- 245 (411)
+++++++++ .++++|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ +.|. ......++. .+|
T Consensus 150 ~~l~~~l~~--~~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~ 226 (391)
T 3dzz_A 150 ADLEEKLAT--PSVRMMVFCNPHNPIGYAWS-EEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWV 226 (391)
T ss_dssp HHHHHHHTS--TTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGE
T ss_pred HHHHHHHhc--cCceEEEEECCCCCCCcccC-HHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcE
Confidence 999999974 36777777777777887655 444999999999999999999999988 5553 222322222 266
Q ss_pred --hhhhhhhcc-CCccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHH
Q 015230 246 --LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQ 319 (411)
Q Consensus 246 --~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 319 (411)
+.|+||+++ +|+|+||++++ +++++.+.... ....+++.++++++++.++++.... ++.+++++++.+++.+
T Consensus 227 i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 304 (391)
T 3dzz_A 227 VSLISPSKTFNLAALHAACAIIPNPDLRARAEESF--FLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYARE 304 (391)
T ss_dssp EEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH--HHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeChhhccccchhheEEEECCHHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 568999998 79999999886 88888776311 1233567888888888888875322 5556667777777777
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC------cceeeecCC
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF------EAGFTSLAH 392 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~------~~~~~~~~~ 392 (411)
.|++... ++.......++++++++.... .+..++.+.|. ++||.+.++.. +.+|+++.+
T Consensus 305 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~ 370 (391)
T 3dzz_A 305 FLAKEVP--EVKVLDSNASYLAWVDISALG------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC 370 (391)
T ss_dssp HHHHHCT--TSEECCCCBSSEEEEECGGGC------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS
T ss_pred HHHhhCC--CcEEeccCceEEEEEehhhcC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 7766311 222222344666777774311 12367888885 88999998642 458998889
Q ss_pred CHHHHHHHHHHHHHHHHhC
Q 015230 393 SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~~ 411 (411)
+++++++++++|.++++++
T Consensus 371 ~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 371 PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 44
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=4.8e-35 Score=275.27 Aligned_cols=349 Identities=13% Similarity=0.083 Sum_probs=246.8
Q ss_pred CeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC-CCCHHHHHHHHHHHhhCC---CCC
Q 015230 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP---SIE 93 (411)
Q Consensus 19 ~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~-~~~~~~~~l~~~l~~~~~---~~~ 93 (411)
++...+++|+++||.+|++++||.++. ++++ .+|++++++.++++.. ..|. ...++++.+++++.+.++ .++
T Consensus 6 ~~~~~~~~g~~~~d~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~ 82 (377)
T 3fdb_A 6 SIEDLRARNTMKWTRYGQGVLPLWVAE--SDFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPE 82 (377)
T ss_dssp CHHHHHHTCCHHHHSSCTTSEECCSSC--CCSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGG
T ss_pred hHHHhcCCCCceeeccCCCeeeecccC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 334468999999999999999999883 3333 8999999999999873 2222 226788899999887654 578
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
++++|+||++|++.+++.+ ..+++.|++..++|++.... ....|..+..++.... .|++++
T Consensus 83 ~i~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~----------------~d~~~l 143 (377)
T 3fdb_A 83 WIFPIPDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHL-LSATQREGIFIDATGG----------------INLHDV 143 (377)
T ss_dssp GEEEESCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHH-HHHHTCCEEEEECTTS----------------CCHHHH
T ss_pred HEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHH-HHHcCCEEEEccCCCC----------------CCHHHH
Confidence 9999999999999999853 34567899999999975443 3344544444332211 189999
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc-c----CccccccCCCcchh
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y----GGAQEYFGVTPDLT 247 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g-~----~~~~~~~~~~~d~~ 247 (411)
++.++.. +++++++.++|++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..| . ....+..+..+++.
T Consensus 144 ~~~l~~~---~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 219 (377)
T 3fdb_A 144 EKGFQAG---ARSILLCNPYNPLGMVFA-PEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITIT 219 (377)
T ss_dssp HHHHHTT---CCEEEEESSBTTTTBCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEE
T ss_pred HHHhccC---CCEEEEeCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEE
Confidence 9999853 344444444667777665 445999999999999999999999988 555 1 11111222335567
Q ss_pred hhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHH
Q 015230 248 TLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 248 ~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~ 323 (411)
|+||+++ +|+|+||++. ++++++.+... ....+++.++++++++.++++..++ ++.+++++++.+++.+.|++
T Consensus 220 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (377)
T 3fdb_A 220 APSKAWNIAGLKCAQIIFSNPSDAEHWQQL---SPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPK 296 (377)
T ss_dssp CSTTTTTCGGGCCEEEECCSHHHHHHHHHS---CHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChHhccCcchhheEEEeCCHHHHHHHHHH---HHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 7999998755 78888887632 2334678899999998888875322 55666777777777777766
Q ss_pred HHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHH
Q 015230 324 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDD 396 (411)
Q Consensus 324 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~ 396 (411)
... ++.......++++|+++...... .++.+.|.++ ||.+.++. .+.+|+++..++++
T Consensus 297 ~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~e~ 361 (377)
T 3fdb_A 297 RIP--GAKITPMQATYLMWIDFRDTTIE-------------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSREV 361 (377)
T ss_dssp HST--TCEECCCSBCSEEEEECTTSCCC-------------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHH
T ss_pred hCC--CceEecCCeeEEEEEECcccCCC-------------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCHHH
Confidence 411 22222233455667877542111 2456666655 99999864 24589988889999
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
+++++++|+++++++
T Consensus 362 i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 362 LEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998763
No 45
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=2.8e-34 Score=270.61 Aligned_cols=356 Identities=12% Similarity=0.045 Sum_probs=236.7
Q ss_pred CCCCeEEEeecCcEEEec-CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC-CCCHHHHHHHHHHHhhCC--
Q 015230 16 GGQPIVFDSVKGSHMWDI-DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP-- 90 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~-~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~-~~~~~~~~l~~~l~~~~~-- 90 (411)
.+++++..+++|+++||. +|+.++||.++ .+....+|++++++.+++++. ..|+ ...++++++++++.+.++
T Consensus 3 ~~~~~~~~~~~g~~~~d~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 79 (383)
T 3kax_A 3 LFHKTVNRRGTHSIKWDTYKNEELIHAWIA---DMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWD 79 (383)
T ss_dssp ----------------CCCSSSCCEECCCS---SCSSCCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCC
T ss_pred cccceeeccCCCceeeeccCCCCeeecccc---cCCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 345778899999999994 46899999988 433338999999999999873 2232 257889999999998875
Q ss_pred -CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 91 -SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 91 -~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
.++++++|+||++|++.+++.+ ..+++.|++..++|++.... ....|..+..++.....+ .+. -|
T Consensus 80 ~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~--------~~~---~d 145 (383)
T 3kax_A 80 IQKEWIVFSAGIVPALSTSIQAF--TKENESVLVQPPIYPPFFEM-VTTNNRQLCVSPLQKQND--------TYA---ID 145 (383)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHH--CCTTCEEEECSSCCHHHHHH-HHHTTCEEEECCCEEETT--------EEE---CC
T ss_pred CChhhEEEcCCHHHHHHHHHHHh--CCCCCEEEEcCCCcHHHHHH-HHHcCCEEEeccceecCC--------cEE---Ec
Confidence 5789999999999999999864 44668899999999875433 333444343332211111 000 18
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc-----cCC
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY-----FGV 242 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~-----~~~ 242 (411)
++++++.++ +++++++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ +.|.. ..... .+.
T Consensus 146 ~~~l~~~l~---~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 221 (383)
T 3kax_A 146 FEHLEKQFQ---QGVKLMLLCSPHNPIGRVWK-KEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAAR 221 (383)
T ss_dssp HHHHHHHHT---TTCCEEEEESSBTTTTBCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTT
T ss_pred HHHHHHHhC---cCCeEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCc
Confidence 999999994 35666666666777777664 555999999999999999999999987 55531 11111 233
Q ss_pred Ccchhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 015230 243 TPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELT 318 (411)
Q Consensus 243 ~~d~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~ 318 (411)
.+.+.|+||.++ +|+|+||+++ ++++++.+.... ....+++.++++++++.++++..++ ++.+++++++.+++.
T Consensus 222 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 299 (383)
T 3kax_A 222 TITCMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQ--YRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFAC 299 (383)
T ss_dssp EEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHH--HHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEChhhccCcchhheEEEeCCHHHHHHHHHHH--hhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 355679999999 7999999977 688887775311 1223457889999998888764221 445566666666666
Q ss_pred HHHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------Ccceeeec
Q 015230 319 QGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSL 390 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~ 390 (411)
+.|++. .+..... ...++++|+++.... .+..++.+.|. ++||.+.++. .+.+|+++
T Consensus 300 ~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 364 (383)
T 3kax_A 300 EYIKDH---IPTLSVMKPEGSFLLWIDCSALN------------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINI 364 (383)
T ss_dssp HHHHHH---CTTCEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEEC
T ss_pred HHHHhh---CCCceEecCCceEEEEEEccccC------------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEE
Confidence 666653 2322222 334556667774321 12367888887 6799999863 24589988
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 015230 391 AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~ 409 (411)
..+++++++++++|+++++
T Consensus 365 ~~~~~~i~~~l~~l~~~l~ 383 (383)
T 3kax_A 365 GCPRSVLEEILNRLRHTFS 383 (383)
T ss_dssp SSCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhC
Confidence 8899999999999998863
No 46
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=3.6e-33 Score=264.66 Aligned_cols=343 Identities=19% Similarity=0.257 Sum_probs=250.6
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CCCCC---C---CCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFG---A---PCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~~~~---~---~~~~~~~l~~~l~~~~ 89 (411)
.|..+.+++|++++|.+|+.|+||.++ +++|+ .+|++++++.++++. ...++ + ......++.+.+++.+
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 103 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 477889999999999999999999999 78997 899999999999887 32221 1 1456778888888888
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+.. +.+++++|++|+..+++.+ ..+++.|++..+ +|+.........|. .+..++..|
T Consensus 104 g~~-~~i~~~sGs~a~~~~~~~~--~~~gd~v~~~~~-~~~~~~~~~~~~g~-------------------~~~~~~~~d 160 (401)
T 1fc4_A 104 GME-DAILYSSCFDANGGLFETL--LGAEDAIISDAL-NHASIIDGVRLCKA-------------------KRYRYANND 160 (401)
T ss_dssp TCS-EEEEESCHHHHHHTTHHHH--CCTTCEEEEETT-CCHHHHHHHHTSCS-------------------EEEEECTTC
T ss_pred CCC-cEEEeCChHHHHHHHHHHH--cCCCCEEEEcch-hHHHHHHHHHHcCC-------------------ceEEECCCC
Confidence 533 6667778999999988753 234455555544 44333333322232 344445558
Q ss_pred HHHHHHHHHcCCC---cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-c-cccCccccccCCC
Q 015230 170 VSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-R-LAYGGAQEYFGVT 243 (411)
Q Consensus 170 ~~~l~~~~~~~~~---~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~-~g~~~~~~~~~~~ 243 (411)
++++++.+++..+ ++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+ |+ . .|..+ ....++.
T Consensus 161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~ 235 (401)
T 1fc4_A 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCC
Confidence 9999998875211 5788888888888999888 9999999999999999999995 87 3 34332 2223333
Q ss_pred --cchh--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 015230 244 --PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELT 318 (411)
Q Consensus 244 --~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~ 318 (411)
.|++ |+||+++++. .||+++++++++.+...... ...+.+.++++++++.++++.+.. ++++++++++.+++.
T Consensus 236 ~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (401)
T 1fc4_A 236 GRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3555 8999996543 58998899998887632211 122567899999999999988764 577888888999998
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecC
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA 391 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~ 391 (411)
+.|+++ ++... .+.|.++++++. ...+..++.+.|.++||.+.++.. +.+|+++.
T Consensus 314 ~~L~~~----g~~~~-~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 314 EQMSAA----GFTLA-GADHAIIPVMLG-------------DAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHT----TCCBC-CSSSSEEEEEEE-------------CHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHc----CCccc-CCCCCEEEEEcC-------------ChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 888875 22221 356888898873 223457889999999999988743 24787654
Q ss_pred --CCHHHHHHHHHHHHHHHHhC
Q 015230 392 --HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 392 --~t~~~i~~~i~~l~~~~~~~ 411 (411)
+|++++++++++|+++++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998764
No 47
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=9.4e-33 Score=261.56 Aligned_cols=340 Identities=19% Similarity=0.204 Sum_probs=251.8
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~ 89 (411)
.|+.+.+++|++++ .+|+.++||.++ .++|+ .+|.+++++.++++... .+ .+..+.++++++++++.+
T Consensus 26 ~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (398)
T 3a2b_A 26 YFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYV 101 (398)
T ss_dssp SSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 47788999999999 999999999998 56788 89999999999987632 11 234688899999999988
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+ .+++++|+||++|+..+++.+ ..+++.|++.++.|. .+.......|.. +..++..|
T Consensus 102 g-~~~v~~~~ggt~a~~~~~~~~--~~~gd~V~~~~p~~~-~~~~~~~~~g~~-------------------~~~v~~~d 158 (398)
T 3a2b_A 102 G-KEAAILFSTGFQSNLGPLSCL--MGRNDYILLDERDHA-SIIDGSRLSFSK-------------------VIKYGHNN 158 (398)
T ss_dssp T-CSEEEEESSHHHHHHHHHHHS--SCTTCEEEEETTCCH-HHHHHHHHSSSE-------------------EEEECTTC
T ss_pred C-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEECCccCH-HHHHHHHHcCCc-------------------eEEeCCCC
Confidence 4 579999999999999999843 234556666665555 444444444442 33344458
Q ss_pred HHHHHHHHHcCCC-cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc---ccccCccccccCCC--
Q 015230 170 VSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVT-- 243 (411)
Q Consensus 170 ~~~l~~~~~~~~~-~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~-- 243 (411)
++++++.+++..+ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ +.+... .+.++..
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~ 233 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDD 233 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGG
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcC
Confidence 9999999986432 6788889998988998888 999999999999999999999743 223222 3334432
Q ss_pred cchh--hhhhhccC-CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 015230 244 PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 319 (411)
Q Consensus 244 ~d~~--~~sK~~~~-G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 319 (411)
+|++ |+||+++. | ||+++++++++.+..... .+..+...++..++++.++++.++. ++++++++++.+++.+
T Consensus 234 ~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 234 VDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNAR-SVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp CSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCH-HHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CeEEEecccccccCCC---cEEEeCHHHHHHHHHhcc-cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4665 89999984 5 899999998887763111 1223445666666667777776544 6778889999999999
Q ss_pred HHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecC-
Q 015230 320 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA- 391 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~- 391 (411)
.|+++ .+.. ..+.|+++++.+. ...+..++.+.|.++||.+.++.. +.+|+++.
T Consensus 310 ~L~~~--g~~~---~~~~g~~~~~~~~-------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 310 QLLDH--GFDL---GATESPILPIFIR-------------SNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp HHHHT--TCCB---CSCCSSEEEEECC-------------CHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred HHHhc--CCCc---CCCCCCEEEEEcC-------------CHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 98876 2222 1345788888772 233457899999999999998743 34788765
Q ss_pred -CCHHHHHHHHHHHHHHHHhC
Q 015230 392 -HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 392 -~t~~~i~~~i~~l~~~~~~~ 411 (411)
++++++++++++|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998764
No 48
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.8e-32 Score=258.85 Aligned_cols=355 Identities=13% Similarity=0.063 Sum_probs=228.8
Q ss_pred CCCeEEEeecCcEEEecCCC-----EEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCCC-CCH-HHHHHHHHHHhh
Q 015230 17 GQPIVFDSVKGSHMWDIDGN-----EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA-PCL-LENVLAEMVISA 88 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~-----~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~~-~~~-~~~~l~~~l~~~ 88 (411)
++.++-.++.|+++||.+|+ .++||.++. ..++ .+|++++++.++++.. ..|.. ..+ +++++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~ 80 (390)
T 1d2f_A 4 FSKVVDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQ 80 (390)
T ss_dssp --------------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHh
Confidence 44566788999999999987 789997773 3355 7899999999998763 22221 466 888999998877
Q ss_pred CC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeec
Q 015230 89 VP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 165 (411)
Q Consensus 89 ~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (411)
++ .+++|++|+|+++|++.+++.+ ..+++.|++..++||+....+ ...|..+..++.....+ .+.
T Consensus 81 ~g~~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~--------~~~- 148 (390)
T 1d2f_A 81 HYTAIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHTPAYDAFYKAI-EGNQRTVMPVALEKQAD--------GWF- 148 (390)
T ss_dssp SCCCCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEECEECSS--------SEE-
T ss_pred cCCCCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHH-HHCCCEEEEeecccCCC--------ccc-
Confidence 64 4689999999999999999853 245678999999999755443 33344333332211100 000
Q ss_pred CCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc
Q 015230 166 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244 (411)
Q Consensus 166 ~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~ 244 (411)
.|++++++.++.. ++++|+++.++|++|.+.+ .+++++|.++|++||+++|+||+|+++ ..|.... ....+.+
T Consensus 149 --~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~ 222 (390)
T 1d2f_A 149 --CDMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWT-CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVAR 222 (390)
T ss_dssp --CCHHHHHHHHTST--TEEEEEEESSCTTTCCCCC-TTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCC
T ss_pred --cCHHHHHHHhccC--CCeEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcch
Confidence 2899999998742 5677666555666777654 456999999999999999999999987 5553211 1112222
Q ss_pred ---c-hhhhhhhcc-CCccccccccc-HHHHHHhcCCCCccc-ccCC-CCCHHHHHHHHHHHHHHhc--CChHHHHHHHH
Q 015230 245 ---D-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKIT 314 (411)
Q Consensus 245 ---d-~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~-~~t~-~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~ 314 (411)
| +.|+||+++ +|+|+||++++ +++++.+.. ... ..++ +.++++++++.++++...+ ++.+++++++.
T Consensus 223 ~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 299 (390)
T 1d2f_A 223 GDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNL 299 (390)
T ss_dssp SSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHhhccCccHhhcccChhheEEEECCHHHHHHHHH---HHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2 789999998 89999999874 778777652 122 2344 7788998888888874222 44555666666
Q ss_pred HHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------Ccce
Q 015230 315 GELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAG 386 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~ 386 (411)
+++.+.|++. .+......+ .|+++|+++.... .+..++.+.|. ++||.+.++. .+.+
T Consensus 300 ~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~ 364 (390)
T 1d2f_A 300 TYIADKMNAA---FPELNWQIPQSTYLAWLDLRPLN------------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFV 364 (390)
T ss_dssp HHHHHHHHHH---CSSCCCCCCSBCSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEE
T ss_pred HHHHHHHHhh---CCCCEEecCCccEEEEEEccccC------------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeE
Confidence 6666666652 222222223 3556678774210 11367888888 5799998863 2458
Q ss_pred eeecCCCHHHHHHHHHHHHHHHHh
Q 015230 387 FTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 387 ~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+++..+++++++++++|.+++++
T Consensus 365 Ris~~~~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 365 RLNAGCPRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp EEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHHHh
Confidence 998888899999999999998875
No 49
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=2.9e-33 Score=265.98 Aligned_cols=334 Identities=15% Similarity=0.097 Sum_probs=241.3
Q ss_pred EEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CC------CCCCHHHHHHHHHHHhhCCCCC
Q 015230 22 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAVPSIE 93 (411)
Q Consensus 22 ~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~------~~~~~~~~~l~~~l~~~~~~~~ 93 (411)
..++.+.++.+.+|++|+||.++ +++|+ .||++++++.+++++.. .. .+..+..+++++++++.+ +.+
T Consensus 45 ~~~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~ 120 (409)
T 3kki_A 45 NKNGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD 120 (409)
T ss_dssp STTSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCS
T ss_pred ccCCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCC
Confidence 34566777778899999999998 88888 89999999999998731 11 122344566777777766 445
Q ss_pred EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHH
Q 015230 94 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 173 (411)
Q Consensus 94 ~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 173 (411)
..+++++|++|+..+++.. ..+++.|++ +..+|..+.......|. ++..++++|++++
T Consensus 121 ~~i~~~sGt~a~~~~l~~~--~~~gd~Vl~-~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~l 178 (409)
T 3kki_A 121 ECLLSQSGWNANVGLLQTI--CQPNTNVYI-DFFAHMSLWEGARYANA-------------------QAHPFMHNNCDHL 178 (409)
T ss_dssp EEEEESCHHHHHHHHHHHH--CCTTCEEEE-ETTSCHHHHHHHHHTTC-------------------EEEEECTTCHHHH
T ss_pred eEEEecchHHHHHHHHHHh--cCCCCEEEE-CCCcCHHHHHHHHHcCC-------------------eEEEecCCCHHHH
Confidence 6677788999999998842 234455555 45555444444444433 2334455699999
Q ss_pred HHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc--c-ccccCccccccCC--Ccch--
Q 015230 174 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL-- 246 (411)
Q Consensus 174 ~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g--~-~~g~~~~~~~~~~--~~d~-- 246 (411)
++.+++. ++++|+++++++++|.+.+ +++|.++|++||++||+||+|++ + +.|..+. ..+++ .+|+
T Consensus 179 e~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~ 251 (409)
T 3kki_A 179 RMLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMT 251 (409)
T ss_dssp HHHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEE
T ss_pred HHHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEE
Confidence 9999853 3589999999999999988 99999999999999999999986 4 4454333 34444 3555
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
.|+||++++| .|++++++++++.+......+.. +...++++++++.++++.++. ++++++++++.+++.+.|+++
T Consensus 252 ~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~- 327 (409)
T 3kki_A 252 ASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIF-SSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL- 327 (409)
T ss_dssp EESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHH-SBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eecchhhCCC--ceEEEECHHHHHHHHHhCcCccc-cCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-
Confidence 6899999965 58888888877766532111212 334678888899999987766 577788888888898888876
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------Ccceeee--cCCCHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTS--LAHSSDD 396 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~--~~~t~~~ 396 (411)
++. +.+.|.++++.+.. .....++.+.|.++||++.+.. .+.+|++ ..+|+++
T Consensus 328 ---g~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~ 389 (409)
T 3kki_A 328 ---GLT--IRSESQIIGLETGD-------------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQ 389 (409)
T ss_dssp ---TCC--CCCSSSEEEEEEES-------------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHH
T ss_pred ---CCc--cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHH
Confidence 222 12468888888842 3345678999999999996532 3457775 4579999
Q ss_pred HHHHHHHHHHHHHh
Q 015230 397 IQHTITAAEKVLRQ 410 (411)
Q Consensus 397 i~~~i~~l~~~~~~ 410 (411)
+++++++|+++++.
T Consensus 390 i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 390 IAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999865
No 50
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3e-33 Score=264.25 Aligned_cols=355 Identities=12% Similarity=0.044 Sum_probs=248.3
Q ss_pred CCCCeEEEeecCcEEEecCC-----CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CC-CCCCHHHHHHHHHHHhh
Q 015230 16 GGQPIVFDSVKGSHMWDIDG-----NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SF-GAPCLLENVLAEMVISA 88 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g-----~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~-~~~~~~~~~l~~~l~~~ 88 (411)
.++.++..++.|+++||.+| +.++||.++ .+....+|++++++.++++... .+ .+..++++++++++++.
T Consensus 7 ~~~~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~ 83 (391)
T 4dq6_A 7 NFNEIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRR 83 (391)
T ss_dssp CTTSCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 45566778999999999865 455999887 4444488999999999998732 22 23467889999999988
Q ss_pred CC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC-CCCCCCCCCCCceee
Q 015230 89 VP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLT 164 (411)
Q Consensus 89 ~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ 164 (411)
++ ..+++++|+|+++|++.+++.+ ..+++.|++..++|++....+ ...|..+..++.. ...+ .+.
T Consensus 84 ~g~~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------~~~ 152 (391)
T 4dq6_A 84 HNWKIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQEPVYSPFNSVV-KNNNRELIISPLQKLENG--------NYI 152 (391)
T ss_dssp HCCCCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHH-HHTTCEEEECCCEECTTS--------CEE
T ss_pred hCCCCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHH-HHcCCeEEeeeeeecCCC--------ceE
Confidence 75 5789999999999999999854 345688999999998754433 3444444443322 1111 001
Q ss_pred cCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc--
Q 015230 165 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF-- 240 (411)
Q Consensus 165 ~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~-- 240 (411)
+ |++++++.++. +++++++.+++++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..|.. .....+
T Consensus 153 ~---d~~~l~~~l~~----~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 224 (391)
T 4dq6_A 153 M---DYEDIENKIKD----VKLFILCNPHNPVGRVWT-KDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISK 224 (391)
T ss_dssp C---CHHHHHHHCTT----EEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred e---eHHHHHHHhhc----CCEEEEECCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCc
Confidence 1 89999998873 677777766777787655 444999999999999999999999988 55532 111111
Q ss_pred ---CCCcchhhhhhhcc-CCcccccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHH
Q 015230 241 ---GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKI 313 (411)
Q Consensus 241 ---~~~~d~~~~sK~~~-~G~~~g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~ 313 (411)
+....+.|+||+++ +|+|+||+++++ ++++.+.... ....+++.++++++++.++++..++ ++.+++++++
T Consensus 225 ~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (391)
T 4dq6_A 225 EFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAF--TRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESN 302 (391)
T ss_dssp HHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHH--HHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHH--HhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 12234568999998 799999998764 7777775311 1233567889999998888875322 4455566666
Q ss_pred HHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------Ccc
Q 015230 314 TGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 385 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~ 385 (411)
.+++.+.|++. .+...... ..++++|+++.... .+..++.+.|.++ ||.+.++. .+.
T Consensus 303 ~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~ 367 (391)
T 4dq6_A 303 IDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALG------------LSDEELESILVQKGKVALNQGNSFGIGGSGY 367 (391)
T ss_dssp HHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTE
T ss_pred HHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcC------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCe
Confidence 66666666553 23332223 34556668774311 1236789999998 99998863 245
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHH
Q 015230 386 GFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 386 ~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+|+++.++++++++++++|+++++
T Consensus 368 iRis~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 368 QRINLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhC
Confidence 899888999999999999998863
No 51
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=6.4e-32 Score=254.57 Aligned_cols=337 Identities=17% Similarity=0.193 Sum_probs=245.2
Q ss_pred CCeEEEeecCcEEEecCCCEEEeccCCccccccCC-CcHHHHHHHHHHHHc-CC-----CCC-CCCHHHHHHHHHHHhhC
Q 015230 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GT-----SFG-APCLLENVLAEMVISAV 89 (411)
Q Consensus 18 ~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~-~~-----~~~-~~~~~~~~l~~~l~~~~ 89 (411)
.|+.+.+++|++++ .+|+.|+||.++ .++|+ .+|++++++.++++. +. .+. +......++.+.+++.+
T Consensus 22 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 97 (384)
T 1bs0_A 22 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 97 (384)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 47788999999999 899999999998 55785 899999999999877 32 121 24567788888888888
Q ss_pred CCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC
Q 015230 90 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169 (411)
Q Consensus 90 ~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (411)
+ .++.+++++|++|+..+++. +.++++.|+.+..+|+.+.......|. .+..++..|
T Consensus 98 g-~~~~i~~~sGt~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 154 (384)
T 1bs0_A 98 G-YSRALLFISGFAANQAVIAA---MMAKEDRIAADRLSHASLLEAASLSPS-------------------QLRRFAHND 154 (384)
T ss_dssp T-CSEEEEESCHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHHTSSS-------------------EEEEECTTC
T ss_pred C-CCcEEEeCCcHHHHHHHHHH---hCCCCcEEEEcccccHHHHHHHHHcCC-------------------CEEEeCCCC
Confidence 5 34677778889999998874 334444455555566554444444333 234455568
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCCCcch
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL 246 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~~~d~ 246 (411)
++++++.+++..++++++++++++|++|.+.+ +++|.++|++||+++|+||+|+ ++ +.+... .+.++..+|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di 229 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPEL 229 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcE
Confidence 99999999865434788888888888999988 9999999999999999999996 33 233322 2345556787
Q ss_pred h--hhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHH
Q 015230 247 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 321 (411)
Q Consensus 247 ~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l 321 (411)
+ |+||+++. +.||+++++++++.+......+ ..+.+.++++++++.++++.+.+ ++++++++++.+++.+.|
T Consensus 230 ~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 230 LVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHL-IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHH-HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccchhhc--cCcEEEeCHHHHHHHHHhchhh-hcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 6 89999984 3499999998888776322122 22446889999998888887762 466777788888888777
Q ss_pred HHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeec--CC
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 392 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~--~~ 392 (411)
+++ ++.. ..+.|.++++.+. ...+..++.+.|.++||.+.++.. +.+|+++ .+
T Consensus 307 ~~~----g~~~-~~~~~~~~~~~~~-------------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 307 QDL----PFTL-ADSCSAIQPLIVG-------------DNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp TTS----SCEE-CSCCSSBCCEEEE-------------SHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred Hhc----CCcc-cCCCCCEEEEEeC-------------CHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 664 3221 1255777788773 223457899999999999998642 3577754 45
Q ss_pred CHHHHHHHHHHHHHH
Q 015230 393 SSDDIQHTITAAEKV 407 (411)
Q Consensus 393 t~~~i~~~i~~l~~~ 407 (411)
|++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
No 52
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1.2e-31 Score=256.40 Aligned_cols=351 Identities=14% Similarity=0.064 Sum_probs=238.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a 104 (411)
..++||.++. .+++ .+|.+++++.++++.. ..|+ +..++++++++++.+.++ .++ ++++|+||++|
T Consensus 37 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 4589998885 3455 7899999999998762 2232 235678888888877654 467 99999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-CCHHHHHHHHHcCCCc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~~ 183 (411)
++.+++.+ ..+++.|++..++||+.... ....|..+..++....... .......+ .|++++++.++ ++
T Consensus 114 ~~~~~~~~--~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~l~---~~ 182 (429)
T 1yiz_A 114 LYATIQGH--VDEGDEVIIIEPFFDCYEPM-VKAAGGIPRFIPLKPNKTG-----GTISSADWVLDNNELEALFN---EK 182 (429)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECBCCCSS-----SSEEGGGCBCCHHHHHHHCC---TT
T ss_pred HHHHHHHh--cCCCCEEEEcCCCchhHHHH-HHHcCCEEEEEeCCccccc-----ccccccCcccCHHHHHHHhc---cC
Confidence 99999864 34568899999999985543 3344544444332211000 00000011 28999998885 46
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccc----ccCCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQE----YFGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~----~~~~~~d~~~~sK~~~-~G 256 (411)
+++|++++++|++|.+. +++++++|.++|++||+++|+||+|+++ ..|. ..... ..+..+++.|+||.++ +|
T Consensus 183 ~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 261 (429)
T 1yiz_A 183 TKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG 261 (429)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG
T ss_pred ceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC
Confidence 78888777777788765 4667999999999999999999999988 5442 11111 2344556779999999 79
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-----HhcCChH----HHHHHHHHHHHHHHHHHHHh
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTY----EYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-----~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 327 (411)
+|+||+++++++++.+.. .....+++.++++++++.++++. ...++.. ++++++.+++.+.|+++
T Consensus 262 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 335 (429)
T 1yiz_A 262 WKIGWAYGPEALLKNLQM---VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV--- 335 (429)
T ss_dssp GCCEEEESCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred cceEEEEeCHHHHHHHHH---HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 999999999999888763 22345788899999999999887 3223334 44555555555555543
Q ss_pred cCCceEEeeecceEEEEEecCCCCC-cchhcccchHHHHHHHHHHH-HcCeEeccCC-----------CcceeeecCCCH
Q 015230 328 AGHAICGGYISGMFGFFFTEGPVYN-FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSS 394 (411)
Q Consensus 328 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----------~~~~~~~~~~t~ 394 (411)
++.......|+++|+++.....+. ... .....+..++.+.|. ++||.+.++. .+.+|+++..++
T Consensus 336 -g~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~ 412 (429)
T 1yiz_A 336 -GMNPTVPQGGYFMVADWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKD 412 (429)
T ss_dssp -TCEEEECSBSSEEEEECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCH
T ss_pred -CCcccCCCcceEEEEEcccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCH
Confidence 444333445789999885321000 000 000023457778776 7899998862 346899888899
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++++++++|+++++.
T Consensus 413 e~i~~~l~~l~~~l~~ 428 (429)
T 1yiz_A 413 ENLQKAAEILRKWKGS 428 (429)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999998754
No 53
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=5.5e-33 Score=262.98 Aligned_cols=357 Identities=11% Similarity=0.013 Sum_probs=245.0
Q ss_pred ccCcccccccCCCCCeEEEeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHH
Q 015230 5 VNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVL 81 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l 81 (411)
+++.++.++. .++....+.+.++++.+|+.++||.++. .+++ .+|.+++++.+.++....|+ +..++++++
T Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~l 75 (396)
T 3jtx_A 2 MNTLLKQLKP---YPFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQAC 75 (396)
T ss_dssp HHHHHHHCCS---CHHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHH
T ss_pred hhhhhccCCC---ChHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHH
Confidence 4444444442 3555556677777888999999999985 3333 78999999999887543443 346788999
Q ss_pred HHHHHhhCC----CCC-EEEEeCChHHHHHHHHHHHHhccCC----cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 82 AEMVISAVP----SIE-MVRFVNSGTEACMGVLRLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 82 ~~~l~~~~~----~~~-~v~~~~~g~~a~~~al~~~~~~~~~----~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
++++.+.++ .++ ++++|+|+++|+..+++.+.. .++ +.|++..++|++.... ....|..+..++. ...
T Consensus 76 a~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~-~~~~g~~~~~v~~-~~~ 152 (396)
T 3jtx_A 76 ANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGA-TLLGGGEIHFANC-PAP 152 (396)
T ss_dssp HHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHH-HHHTTCEEEEEEC-CTT
T ss_pred HHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHH-HHHcCCEEEEeec-CCC
Confidence 999988775 267 999999999999999986422 222 6899999999865443 3344544444333 122
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~ 231 (411)
++.. |++++++.++. ++++++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..
T Consensus 153 g~~~------------d~~~l~~~~~~---~~~~v~l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 216 (396)
T 3jtx_A 153 SFNP------------DWRSISEEVWK---RTKLVFVCSPNNPSGSVLD-LDGWKEVFDLQDKYGFIIASDECYSEIYFD 216 (396)
T ss_dssp TCCC------------CGGGSCHHHHH---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHCCEEEEECTTTTCCST
T ss_pred CCcc------------CHHHHHHhhcc---CcEEEEEECCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence 2211 77888888874 5667666555677777665 444999999999999999999999988 55
Q ss_pred c-cCccc-c-------ccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH
Q 015230 232 A-YGGAQ-E-------YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL 301 (411)
Q Consensus 232 g-~~~~~-~-------~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~ 301 (411)
+ ..... . ..+..+++.|+||.++ +|+|+||+++++++++.+.. .....+++.++++++++.++++..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~ 293 (396)
T 3jtx_A 217 GNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL---YRTYHGSAMSIPVQRASIAAWDDE 293 (396)
T ss_dssp TCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH---HHHHHTCCCCHHHHHHHHHHHHCC
T ss_pred CCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHhCCH
Confidence 5 22221 1 1344566779999987 69999999999999888763 223446788999999988887631
Q ss_pred hc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEec
Q 015230 302 KE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFA 379 (411)
Q Consensus 302 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~ 379 (411)
.. ++.+++++++.+++.+.|++. .+. .....|+++|+++... +...+.+.|. ++||.+.
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~l~~~---~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~ 354 (396)
T 3jtx_A 294 QHVIDNRRLYQEKFERVIPILQQV---FDV--KLPDASFYIWLKVPDG--------------DDLAFARNLWQKAAIQVL 354 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT---SCC--CCCSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCc--cCCCeeEEEEEECCCC--------------CHHHHHHHHHHHCCEEEe
Confidence 11 333444444444444444432 121 1234577888887431 1256777774 5699998
Q ss_pred cCC------------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 380 PSQ------------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 380 ~~~------------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
++. .+.+|+++..+++++++++++|++++
T Consensus 355 ~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 355 PGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp EGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 853 24578988889999999999999875
No 54
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1.2e-32 Score=260.83 Aligned_cols=357 Identities=15% Similarity=0.086 Sum_probs=243.4
Q ss_pred CCCCeEEEeecCcEEEecCC-------CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC-CCCHHHHHHHHHHH
Q 015230 16 GGQPIVFDSVKGSHMWDIDG-------NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVI 86 (411)
Q Consensus 16 ~~~~~~~~~~~g~~~~~~~g-------~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~-~~~~~~~~l~~~l~ 86 (411)
+++.++..++.|+++||.+| +.++||.++. .+++ .+|.+.+++.++++.. ..|. ...++++.+++++.
T Consensus 4 ~~~~~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~ 80 (399)
T 1c7n_A 4 DFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK 80 (399)
T ss_dssp CSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred cccccccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHH
Confidence 34455667899999999776 3789998774 3333 7899999999998763 2222 14567788888877
Q ss_pred hhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCcee
Q 015230 87 SAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 163 (411)
Q Consensus 87 ~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 163 (411)
+.++ ..+++++|+|+++|+..+++.+ ..+++.|++..++||+....+ ...|..+..++.....+ .+
T Consensus 81 ~~~g~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~g--------~~ 149 (399)
T 1c7n_A 81 DRHQWDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAI-KNQERKIIECELLEKDG--------YY 149 (399)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHH-HTTTCEEEECCCEEETT--------EE
T ss_pred HHhCCCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHH-HHcCCEEEecccccCCC--------CE
Confidence 6554 4789999999999999999853 345678999999999755443 33344333322210111 00
Q ss_pred ecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Cccccc--
Q 015230 164 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEY-- 239 (411)
Q Consensus 164 ~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~-- 239 (411)
. .|++++++.+++ .++++|+++.++|++|.+. +.+++++|.++|++||++||+||+|+++ ..|. ......
T Consensus 150 ~---~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (399)
T 1c7n_A 150 T---IDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (399)
T ss_dssp E---CCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred E---EcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence 1 289999999873 3577777666667777765 4667999999999999999999999987 5442 112211
Q ss_pred ---cCCCcchhhhhhhcc-CCccccccccc-HHHHHHhcCCCCcccccCC-CCCHHHHHHHHHHHHHHhc--CChHHHHH
Q 015230 240 ---FGVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLN 311 (411)
Q Consensus 240 ---~~~~~d~~~~sK~~~-~G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~~--~~~~~~~~ 311 (411)
.+....+.|+||+++ +|+|+||++++ +++++.+... ....++ +.++++++++.++++...+ ++.+++++
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 300 (399)
T 1c7n_A 224 EQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKS---RDATSGMPFTTLGYKACEICYKECGKWLDGCIKVID 300 (399)
T ss_dssp HHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH---HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHH---HhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 223345679999999 79999999886 6688777631 122223 5688999988888864221 44555566
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------C
Q 015230 312 KITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------F 383 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~ 383 (411)
++.+++.+.|++. .+......+ .++++|+++.... .+..++.+.|. ++||.+.++. .
T Consensus 301 ~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~ 365 (399)
T 1c7n_A 301 KNQRIVKDFFEVN---HPEIKAPLIEGTYLQWIDFRALK------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGI 365 (399)
T ss_dssp HHHHHHHHHHHHH---CTTSBCCCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGT
T ss_pred HHHHHHHHHHHhh---CCCCeEecCCceEEEEEEcccCC------------CCHHHHHHHHHHhCCEEEeCccccCCCCC
Confidence 6666666666652 222222233 3556678774210 11357888887 6799998863 2
Q ss_pred cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 384 EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 ~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|+++..+++++++++++|.+++++
T Consensus 366 ~~iRis~~~~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 366 GFERINLAAPSSVIQESLERLNKALKD 392 (399)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccCHHHHHHHHHHHHHHHHH
Confidence 458998888899999999999998875
No 55
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=1e-31 Score=251.08 Aligned_cols=333 Identities=14% Similarity=0.152 Sum_probs=224.1
Q ss_pred eecCcEEEe---cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeC
Q 015230 24 SVKGSHMWD---IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVN 99 (411)
Q Consensus 24 ~~~g~~~~~---~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~ 99 (411)
..+|..+++ .+|+.++||.++. ++++ .+|++++++.++++....| +.....++.+++++.++ .++++++|+
T Consensus 11 ~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~i~~~~ 85 (361)
T 3ftb_A 11 MIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGVY--PDVNYRRLNKSIENYLKLKDIGIVLGN 85 (361)
T ss_dssp -----------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGSC--CCTTCHHHHHHHHHHHTCCSCEEEEES
T ss_pred ccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHhCCCcceEEEcC
Confidence 334455554 4889999999985 4554 6899999999998874333 33444667777777776 678999999
Q ss_pred ChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 100 SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 100 ~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
||++|++.+++. + +.|++..++|++.... ....|..+..++.....++ +++++++.++.
T Consensus 86 g~t~al~~~~~~---~---d~vi~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--------------~~~~l~~~l~~ 144 (361)
T 3ftb_A 86 GASEIIELSISL---F---EKILIIVPSYAEYEIN-AKKHGVSVVFSYLDENMCI--------------DYEDIISKIDD 144 (361)
T ss_dssp SHHHHHHHHHTT---C---SEEEEEESCCTHHHHH-HHHTTCEEEEEECCTTSCC--------------CHHHHHHHTTT
T ss_pred CHHHHHHHHHHH---c---CcEEEecCChHHHHHH-HHHcCCeEEEeecCcccCC--------------CHHHHHHhccC
Confidence 999999999983 3 8899999999975443 3334544444333222222 67889888873
Q ss_pred CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCC---cchhhhhhhcc-
Q 015230 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT---PDLTTLGKIIG- 254 (411)
Q Consensus 180 ~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~---~d~~~~sK~~~- 254 (411)
+++++++.++|++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..+........+.. ..+.|+||.++
T Consensus 145 ----~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 219 (361)
T 3ftb_A 145 ----VDSVIIGNPNNPNGGLIN-KEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAM 219 (361)
T ss_dssp ----CSEEEEETTBTTTTBCCC-HHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSC
T ss_pred ----CCEEEEeCCCCCCCCCCC-HHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCC
Confidence 455555555666776665 444999999999999999999999988 43222222222222 22458999999
Q ss_pred CCccccccc-ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 255 GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 255 ~G~~~g~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+|+|+||++ .++++++.+.... .+++.++++++++.++++..+. ++.+++++++.+++.+.|++ .+...
T Consensus 220 ~G~r~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~ 290 (361)
T 3ftb_A 220 PGIRFGYGITNNKEIAAKIKAKQ-----NPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNK----IGFIK 290 (361)
T ss_dssp GGGCCEEEEESCHHHHHHHHTTS-----CTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH----SSSEE
T ss_pred CCcceeEEEeCCHHHHHHHHhhC-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc
Confidence 799999997 8999998887422 2568899999998888763111 33444455555555555543 45444
Q ss_pred -EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHH
Q 015230 333 -CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 333 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~ 405 (411)
...+.|.++++.+.. .+..++.+.|.++||.+.++. .+.+|+++. +.++++++++.|+
T Consensus 291 ~~~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~ 355 (361)
T 3ftb_A 291 RVFSPHANFVLCRLEN--------------ISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRALK 355 (361)
T ss_dssp EEECCSSSEEEEEESS--------------SCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHH
T ss_pred eecCCCCeEEEEEcCC--------------CCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHH
Confidence 556678888888743 113678999999999999864 245788866 8888999999998
Q ss_pred HHHHhC
Q 015230 406 KVLRQI 411 (411)
Q Consensus 406 ~~~~~~ 411 (411)
++.+.+
T Consensus 356 ~~~~~l 361 (361)
T 3ftb_A 356 GVENNL 361 (361)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 887653
No 56
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=6.3e-31 Score=249.76 Aligned_cols=338 Identities=16% Similarity=0.139 Sum_probs=239.6
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.|+.++||.++.. ++.++.++.+.+++.++++... .|+ +..++++.+++++.+.++ .++++++|+|+++|
T Consensus 32 ~g~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 32 KGVKLISLAAGDP-DPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SSCCCEECCSCCC-CTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCCceEeCCCCCC-CchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 3678999988753 3456788999999999987631 132 235678888888877665 47899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH----cC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NN 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~ 180 (411)
+..+++.+ ..+++.|++..++|++.... ....|..+..++... .+ .|++++++.++ ..
T Consensus 111 ~~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~ 172 (407)
T 2zc0_A 111 LDLLGRVL--IDPGDVVITENPSYINTLLA-FEQLGAKIEGVPVDN-DG--------------MRVDLLEEKIKELKAKG 172 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHh--cCCCCEEEEeCCChHHHHHH-HHHcCCEEEEcccCC-CC--------------CCHHHHHHHHHhhhccc
Confidence 99999864 34568899999999975433 333343333322110 01 18999999987 42
Q ss_pred CCcEEEEE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc---CCCcchhhhhhhcc
Q 015230 181 KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIG 254 (411)
Q Consensus 181 ~~~~~~vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~---~~~~d~~~~sK~~~ 254 (411)
.++++|+ ++.+++++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. .....+ +...++.|+||+++
T Consensus 173 -~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 250 (407)
T 2zc0_A 173 -QKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG 250 (407)
T ss_dssp -CCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC
T ss_pred -CCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC
Confidence 3577764 445566678765 4667999999999999999999999977 54432 112122 23345779999999
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--h--c-CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--K--E-PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+|+|+||+++++++++.+.. .....+++.++++++++.++++.. + . ++.+++++++.+++.+.|++....
T Consensus 251 ~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-- 325 (407)
T 2zc0_A 251 TGFRIGWIIAEGEILKKVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPN-- 325 (407)
T ss_dssp TTSCCEEEECCHHHHHHHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred CCcceEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence 99999999999988887763 222335667889998888888753 2 2 677788888888888888765211
Q ss_pred CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC--------CcceeeecCC-CHHHHHH
Q 015230 330 HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------FEAGFTSLAH-SSDDIQH 399 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~--------~~~~~~~~~~-t~~~i~~ 399 (411)
+.......|+++|+++... .+..++.+.|.++ ||.+.++. .+.+|+++.. |++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~ 392 (407)
T 2zc0_A 326 AEFTKPIAGMFVMFFLPEG-------------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPI 392 (407)
T ss_dssp SCBCCCSBSSEEEEECSTT-------------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHH
T ss_pred CEEecCCCcEEEEEEcCCC-------------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHH
Confidence 2111234577888887421 1236788999988 99999863 2457886654 7999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|++++++
T Consensus 393 ~~~~l~~~l~~ 403 (407)
T 2zc0_A 393 GIKKLAKLYKE 403 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 57
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-32 Score=254.51 Aligned_cols=331 Identities=15% Similarity=0.094 Sum_probs=226.4
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCC-----HHHHHHHHHHHhhCC-C--CC-EEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC-----LLENVLAEMVISAVP-S--IE-MVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~-~--~~-~v~~~~~g~~ 103 (411)
.+|+.++||.++. .+++ .+|.+++++.++++......|+. ++++.+++++.+.++ . ++ ++++|+|+++
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 4578899999985 3455 68999999999986532233333 455666666655545 2 35 9999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|+..+++.+ ..+++.|++..++||+....+ ...|..+..++. ..++. .|++++++.++ ++
T Consensus 99 a~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~-~~~g~~~~~~~~--~~~~~------------~d~~~l~~~l~---~~ 158 (376)
T 2dou_A 99 GLAHLLLAL--TEPEDLLLLPEVAYPSYFGAA-RVASLRTFLIPL--REDGL------------ADLKAVPEGVW---RE 158 (376)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCHHHHHHH-HHTTCEEEEECB--CTTSS------------BCGGGSCHHHH---HH
T ss_pred HHHHHHHHh--cCCCCEEEECCCCcHhHHHHH-HHcCCEEEEeeC--CCCCC------------CCHHHHHHhhc---cC
Confidence 999999853 335678999999999755443 334444443332 11211 16778888776 35
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc---cCCCcchhhhhhhcc-CCc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY---FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~---~~~~~d~~~~sK~~~-~G~ 257 (411)
+++++++.++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..+.. ..... .+....+.|+||+++ +|+
T Consensus 159 ~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh
Confidence 77777765566777765 4667999999999999999999999987 54422 11222 233445679999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.. .....+++.++++++++.++++...+ ++.+++++++.+++.+.|+++ +.....
T Consensus 238 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~~ 309 (376)
T 2dou_A 238 RLGFALGSEEALARLER---VKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV-----LSLLPP 309 (376)
T ss_dssp CCEEEEECHHHHHHHHH---HHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT-----SEECCC
T ss_pred eeEEEecCHHHHHHHHH---HHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccCC
Confidence 99999999999888763 22333566788998888887754211 334444555555555555442 211112
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
..|+++|+++.+. .+..++.+.|.++||.+.++. .+.+|+++..+++++++++++|++++
T Consensus 310 ~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 310 RATMYLWGRLPEG-------------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp CBSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CeeEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 3467888887421 113578899999999998863 24589988789999999999998765
No 58
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=3.7e-31 Score=253.90 Aligned_cols=336 Identities=13% Similarity=0.138 Sum_probs=234.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~ 105 (411)
+..++||.++.. ++.++.++++.+++.++++.. ..|+ +..++++.+++++.+.++ .+++|++|+|+++|+
T Consensus 75 ~~~~i~l~~g~p-~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLP-NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCC-CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCC-CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 356899988853 233468899999999888762 1232 345777888888866655 478999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHH----cCC
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE----NNK 181 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~----~~~ 181 (411)
+.+++++ ..+++.|++..++|++....+ ...|..+..++... .+ .|++++++.++ ..
T Consensus 154 ~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~L~~~l~~~~~~~- 214 (448)
T 3aow_A 154 DLIGRVF--LNPGDIVVVEAPTYLAALQAF-NFYEPQYIQIPLDD-EG--------------MKVEILEEKLKELKSQG- 214 (448)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHTT-
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHHHHHH-HHcCCEEEEeccCC-CC--------------CCHHHHHHHHhhhhccC-
Confidence 9999864 345688999999999754433 23343333222111 11 18999999987 32
Q ss_pred CcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc----CccccccCCCcchhhhhhhccC
Q 015230 182 GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQEYFGVTPDLTTLGKIIGG 255 (411)
Q Consensus 182 ~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~----~~~~~~~~~~~d~~~~sK~~~~ 255 (411)
.++++|++.| .+|++|.+ .+.+.+++|.++|++||++||+||+|+++ ..|. ...++..+..+++.||||.+++
T Consensus 215 ~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~ 293 (448)
T 3aow_A 215 KKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAP 293 (448)
T ss_dssp CCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCG
T ss_pred CCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccc
Confidence 3677876555 44556665 45677999999999999999999999977 4443 2223333445677899999998
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHHHHhcC-C
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAG-H 330 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 330 (411)
|+|+||+++++++++.+.. .....+++.++++++++.++++.. .+ +++++.++++.+++.+.|++. .+ .
T Consensus 294 GlriG~v~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g 367 (448)
T 3aow_A 294 GFRIGWMVGDPGIIRKMEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEG 367 (448)
T ss_dssp GGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTT
T ss_pred cccEEEEEeCHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCC
Confidence 9999999999999888763 223335677899999888888642 11 344555556666666666653 23 1
Q ss_pred ceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCC-CHHHHHHH
Q 015230 331 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHT 400 (411)
Q Consensus 331 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~-t~~~i~~~ 400 (411)
... ....|+++|+++... .+..++.+.|.++||.+.|+. .+.+|+++.. ++++++++
T Consensus 368 ~~~~~p~~g~~~~v~~~~~-------------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~ 434 (448)
T 3aow_A 368 VKWTKPEGGMFIWVTLPDG-------------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEG 434 (448)
T ss_dssp CEECCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHH
T ss_pred eEEeCCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHH
Confidence 222 234578889988421 123678899999999998863 2457887654 79999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 435 ~~~L~~~l~~ 444 (448)
T 3aow_A 435 IKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 59
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.9e-31 Score=254.91 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=241.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.++.++||..+. ..++ .++.+.+++.++++. . ..|+ +..++++++++++.+.++ .+++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGF--FSYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCS--CSSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 567899999885 2334 789999999999875 2 2232 235778889998887765 357899999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC-CCCCCCCCceeecCC-CCHHHHHHHHHcCCCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~~ 183 (411)
+.+++.+ ..+++.|++.+++|++.... ....|..+..++..... +.. .......+ .|++++++.++ ++
T Consensus 132 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~----~~~~~~~~~~d~~~l~~~l~---~~ 201 (447)
T 3b46_A 132 LSCLMGL--LNAGDEVIVFEPFFDQYIPN-IELCGGKVVYVPINPPKELDQ----RNTRGEEWTIDFEQFEKAIT---SK 201 (447)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEEEECCGGGGT----SCBCSTTSEECHHHHHTTCC---TT
T ss_pred HHHHHHH--cCCCCEEEEeCCCchhHHHH-HHHcCCEEEEEeCCCcccccc----ccccccCcccCHHHHHHhhc---cC
Confidence 9999864 34678899999999975443 34445444443321110 000 00000000 28899988775 46
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---ccc--cccCCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQ--EYFGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---~~~--~~~~~~~d~~~~sK~~~-~G 256 (411)
+++|++++++|++|.+. +.+.+++|+++|++||++||+||+|+++ ..|.. ... +..+..+.+.|+||+++ +|
T Consensus 202 ~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 78887777777778765 4667999999999999999999999987 54421 111 12455666789999999 79
Q ss_pred cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 257 LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 257 ~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+|+||+++ ++++++.+.. .....+++.++++++++.++++.... ++++++++++.+++.+.|+++ ++.
T Consensus 281 ~riG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 353 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAAK---AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL----GLP 353 (447)
T ss_dssp SCCEEEECSCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----TCC
T ss_pred hhhEEEEeCCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCe
Confidence 99999999 9999888763 22334778899999998888886532 445666777777777777765 443
Q ss_pred eEEeeecceEEEEEecCCCCC---cchhcccchHHHHHHHHHHH-HcCeEeccCC-----------CcceeeecCCCHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYN---FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDD 396 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----------~~~~~~~~~~t~~~ 396 (411)
......|+++|+++....... +... .....+..++.+.|. ++||.+.|+. .+.+|+++..++++
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~ 432 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEE-ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAY 432 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGG-GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHH
T ss_pred ecCCCeeEEEEEecccccCccccccccc-cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHH
Confidence 333455888999885321000 0000 000123457887776 5799998873 34589988889999
Q ss_pred HHHHHHHHHHH
Q 015230 397 IQHTITAAEKV 407 (411)
Q Consensus 397 i~~~i~~l~~~ 407 (411)
+++++++|.+.
T Consensus 433 l~~~~~~l~~~ 443 (447)
T 3b46_A 433 LENAVERLKLL 443 (447)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 60
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.98 E-value=4.3e-32 Score=257.76 Aligned_cols=355 Identities=10% Similarity=0.094 Sum_probs=231.9
Q ss_pred EEEeecCcEEEecCCC---EEEeccCCccccccCC-CcHHHHHHHHHHHHcC-----CCCCCCCHHHHHHHHHHHhhCCC
Q 015230 21 VFDSVKGSHMWDIDGN---EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPS 91 (411)
Q Consensus 21 ~~~~~~g~~~~~~~g~---~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-----~~~~~~~~~~~~l~~~l~~~~~~ 91 (411)
++..+.|.++.+.+++ .++||.++ ++.++ .+|++++++.+++++. ....+..++++++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g---~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~ 97 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGA 97 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSC---CTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCc---CCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4566677766544444 59999988 55555 7899999999998853 12234567889999999988762
Q ss_pred ---C-CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC
Q 015230 92 ---I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167 (411)
Q Consensus 92 ---~-~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (411)
+ +++++|+||++|+..+++.+ ..+++.|++..++|++... .....|..+..++........ ....
T Consensus 98 ~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~-----~~~~--- 166 (407)
T 3nra_A 98 PVDARDGLIITPGTQGALFLAVAAT--VARGDKVAIVQPDYFANRK-LVEFFEGEMVPVQLDYVSADE-----TRAG--- 166 (407)
T ss_dssp CCCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEBCCCSSCC-----SSCC---
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEEcCCcccchHH-HHHHcCCEEEEeecccccccC-----cCCC---
Confidence 3 79999999999999999742 3467789999999886443 333445444333221000000 0000
Q ss_pred CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccc-----c
Q 015230 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY-----F 240 (411)
Q Consensus 168 ~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~-----~ 240 (411)
-|++++++.++. ++++++++.++|++|.+. +.+.+++|+++|++||+++|+||+|+++ ..|... .... .
T Consensus 167 ~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~ 242 (407)
T 3nra_A 167 LDLTGLEEAFKA---GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDA 242 (407)
T ss_dssp BCHHHHHHHHHT---TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCG
T ss_pred cCHHHHHHHHhh---CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccC
Confidence 189999999984 345555555567777665 4556999999999999999999999977 554322 2222 2
Q ss_pred CCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 241 GVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 241 ~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+....+.|+||+++ +|+|+||+++++++++.+.. .....+++.++++++++.++++. .++..++..+..+..++
T Consensus 243 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~ 317 (407)
T 3nra_A 243 ENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEK---LQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRD 317 (407)
T ss_dssp GGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHH---HHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHH
T ss_pred CcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHH---HHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHH
Confidence 22344669999999 79999999999999888763 22334566678877777666542 12333333333334444
Q ss_pred HHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecC
Q 015230 320 GIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLA 391 (411)
Q Consensus 320 ~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~ 391 (411)
.+.+...+.+.... ....|+++++.+.... .+..++.+.|.+ +||++.++. ...+|+++.
T Consensus 318 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~ 385 (407)
T 3nra_A 318 ELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFS 385 (407)
T ss_dssp HHHHHHHTSTTCBCCCCSBSSEECCBCCCBS------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECC
T ss_pred HHHHHHhcCCCceeccCCeeEEEEEeCCCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeC
Confidence 44433333332222 2334677777764311 123678888865 599998863 345899888
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
.+++++++++++|++++++
T Consensus 386 ~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 386 QDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999875
No 61
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.98 E-value=1.7e-31 Score=250.20 Aligned_cols=326 Identities=13% Similarity=0.081 Sum_probs=232.8
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~ 112 (411)
.+.++||.++. ++++ .+|++++++.+.++......|+.....++.+++++.++ ..+++++|+|+++|+..+++.+
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~ 105 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA 105 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence 36789999884 4444 78999999999988522233343345677777777765 3579999999999999999853
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++..++|++....+. ..|..+..++......+ |++++++.++.+ ++++|+++.+
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~--------------d~~~l~~~l~~~--~~~~v~~~~~ 166 (367)
T 3euc_A 106 --ARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLRADFTL--------------DRGAMLAAMAEH--QPAIVYLAYP 166 (367)
T ss_dssp --CCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECCTTSCC--------------CHHHHHHHHHHH--CCSEEEEESS
T ss_pred --cCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCCCCCCC--------------CHHHHHHHhhcc--CCCEEEEcCC
Confidence 3456889999999998655433 33443333332211111 899999999852 4567777666
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHh--CCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 269 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~ 269 (411)
+|++|.+.+ .+.+++|.++|++| |+++|+||+|++| ..+.....+..+..+++.|+||+..+|+|+||++++++++
T Consensus 167 ~nptG~~~~-~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 167 NNPTGNLFD-AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CTTTCCCCC-HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHH
Confidence 777787664 44499999999999 9999999999987 4443333344444566779999933689999999999999
Q ss_pred HHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecC
Q 015230 270 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348 (411)
Q Consensus 270 ~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 348 (411)
+.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|++ .+......+.|.++++.+.
T Consensus 246 ~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~~~~~~~~~~~~~~~~-- 314 (367)
T 3euc_A 246 EQLDKV-----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA----HGGVTVFPSAANFLLARVP-- 314 (367)
T ss_dssp HHHGGG-----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT----STTCEECCCSSSEEEEECS--
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh----CCCcEECCCCCeEEEEECC--
Confidence 888742 23567899999999888865221 44555566666666666654 3333344556888888773
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC------cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+..++.+.|.++||.+.++.. +.+|+++. +++++++++++|+++++
T Consensus 315 --------------~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 315 --------------DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp --------------CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred --------------CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 126788889999999998753 45788866 99999999999998865
No 62
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.98 E-value=2.1e-31 Score=249.75 Aligned_cols=320 Identities=15% Similarity=0.135 Sum_probs=232.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.++||.++. .++++ +|.+++++.+.++... .|+ +..++++.+++++.+.++ .++++++|+||++|+.
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 477899999885 34554 7899999999987632 332 245778899998887654 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+ ..+++.|++.+++|++....+ ...|.. +..++ .|++++++.++. ++++
T Consensus 104 ~~~~~~--~~~gd~vl~~~p~~~~~~~~~-~~~g~~-------------------~~~v~-~d~~~l~~~l~~---~~~~ 157 (370)
T 2z61_A 104 FALSSI--IDDGDEVLIQNPCYPCYKNFI-RFLGAK-------------------PVFCD-FTVESLEEALSD---KTKA 157 (370)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHHH-HHTTCE-------------------EEEEC-SSHHHHHHHCCS---SEEE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHHHHH-HHcCCE-------------------EEEeC-CCHHHHHHhccc---CceE
Confidence 999864 345678999999999754433 233332 22222 389999988863 5777
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc----CCCcchhhhhhhcc-CCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~----~~~~d~~~~sK~~~-~G~~~g 260 (411)
+++++++|++|.+.+ .+ |.++|++||+++|+||+|+++ ..|.......+ +....+.|+||+++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 777777777888887 66 999999999999999999977 54432222221 22333568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
|+++++++++.+.. .....+++.++++++++.++++. ... ++++++++++.+++.+.|+++ ++.......
T Consensus 233 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 305 (370)
T 2z61_A 233 YVISNDEIIEAILK---LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIG 305 (370)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCB
T ss_pred EEEECHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCc
Confidence 99999998888763 22334667889999988888764 222 556677778888888888765 222222334
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
|+++|+++.. +..++.+.|. ++||.+.++. .+.+|+++.++++++++++++|.++++
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE---------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS---------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC---------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 6677776632 1367888887 7899998863 346899888999999999999999875
No 63
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=1.3e-30 Score=242.85 Aligned_cols=333 Identities=13% Similarity=0.062 Sum_probs=239.8
Q ss_pred cCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 26 KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 26 ~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
.+...++.+|+.++||.++. ++++ .+|++++++.++++.. ..|+.....++.+++++.++ .++++++|+|+++|
T Consensus 6 ~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a 80 (354)
T 3ly1_A 6 ESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEG 80 (354)
T ss_dssp ---CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHH
T ss_pred ccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHH
Confidence 35566778899999999985 4444 8899999999998863 34466667899999999987 68899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.+ ..+++.|++..++|++... .....|..+..++.....++ |++++++.++++ +++
T Consensus 81 ~~~~~~~l--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~~ 142 (354)
T 3ly1_A 81 IRAAIEAY--ASLEAQLVIPELTYGDGEH-FAKIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SGP 142 (354)
T ss_dssp HHHHHHHH--CCTTCEEEEESSSCTHHHH-HHHHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SSC
T ss_pred HHHHHHHH--hCCCCeEEECCCCchHHHH-HHHHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CCC
Confidence 99999853 3456789999999886543 33344544444333211111 899999999853 256
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccc---ccc-CCCcchhhhhhhcc-CCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ---EYF-GVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~---~~~-~~~~d~~~~sK~~~-~G~ 257 (411)
++|+++.++|++|.+.+ .+.+++|+++| +||+++|+||+|+++ ..+.. ... +.. +....+.|+||+++ +|+
T Consensus 143 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 220 (354)
T 3ly1_A 143 SIVYLVNPNNPTGTITP-ADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM 220 (354)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG
T ss_pred CEEEEeCCCCCcCCCcC-HHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhh
Confidence 77777666777787776 33366666666 699999999999987 54421 111 122 33355668999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
|+||+++++++++.+.... ..++.++++++++.++++.... ++.+++++++.+++.+.|+++ ++.. ..+
T Consensus 221 r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~-~~~ 290 (354)
T 3ly1_A 221 RVGYAVAHPTVIALMGRYV-----AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----KLPY-LPS 290 (354)
T ss_dssp CCEEEECCHHHHHHHGGGT-----TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCC
T ss_pred hheeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCeE-CCC
Confidence 9999999999999887422 2367889999998888764322 555667777777777777765 3222 245
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.|.++++++.. +..++.+.|.++||.+. +. ...+|+++. +++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~---------------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 291 EGNFVFHQLVV---------------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CSSEEEEECSS---------------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCC---------------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 68888887742 13678899999999998 43 245788866 899999999999998864
No 64
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.98 E-value=2.2e-31 Score=251.26 Aligned_cols=338 Identities=13% Similarity=0.135 Sum_probs=236.2
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+|+.++||.++. .+++ .+|.+.+++.+.++.. ..|+ +..++++.+++++.+.++ .++++++|+||++|+
T Consensus 27 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 3678899999885 3344 6889999999998763 2332 246678888888887654 568999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.+ ..+++.|++.+++|++... .....|..+..++.....++. -|++++++.++ ++++
T Consensus 104 ~~~~~~~--~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~ 165 (388)
T 1j32_A 104 FNLMLAM--IEPGDEVIIPAPFWVSYPE-MVKLAEGTPVILPTTVETQFK------------VSPEQIRQAIT---PKTK 165 (388)
T ss_dssp HHHHHHH--CCTTCEEEEESSCCTHHHH-HHHHTTCEEEEECCCGGGTTC------------CCHHHHHHHCC---TTEE
T ss_pred HHHHHHh--cCCCCEEEEcCCCChhHHH-HHHHcCCEEEEecCCcccCCC------------CCHHHHHHhcC---cCce
Confidence 9999864 3456789999999987543 333445444443322111110 18899998886 3577
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC----ccccc--cCCCcchhhhhhhcc-CCc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEY--FGVTPDLTTLGKIIG-GGL 257 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~----~~~~~--~~~~~d~~~~sK~~~-~G~ 257 (411)
+|++++++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+.. ..++. .+..+++.|+||+++ +|+
T Consensus 166 ~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 166 LLVFNTPSNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 7777777777887754 566999999999999999999999987 44421 11111 334556779999998 799
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+||+++++++++.+.. .....+++.++++++++.++++...+ ++++++++++.+++.+.|+++ . ++.....
T Consensus 245 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~ 318 (388)
T 1j32_A 245 RVGFLAGPVPLVKAATK---IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM-P--GLECPKP 318 (388)
T ss_dssp CCEEEECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-T--TCBCCCC
T ss_pred ceEEEEeCHHHHHHHHH---HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCC
Confidence 99999999998887763 22344677888999888888763221 345556666666666666553 1 2222222
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..|+++|+++... ..+..++.+.|.+ +||.+.++. .+.+|+++.++++++++++++|++++++
T Consensus 319 ~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 319 DGAFYMFPSIAKT------------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp CBTTEECCBCGGG------------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEecCCC------------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 3455666655321 1123678888876 699998863 3568998888999999999999998875
No 65
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.96 E-value=2.5e-34 Score=271.80 Aligned_cols=354 Identities=11% Similarity=0.013 Sum_probs=241.1
Q ss_pred CCCeEEEeecCcEEEecCCC--EEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC-CCCHHHHHHHHHHHhhCC-
Q 015230 17 GQPIVFDSVKGSHMWDIDGN--EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 90 (411)
Q Consensus 17 ~~~~~~~~~~g~~~~~~~g~--~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~-~~~~~~~~l~~~l~~~~~- 90 (411)
++.++..+++|+++||.+|+ .++||..+ .+ ++ .+|++++++.+++.... .|. ...++++++++++.+.++
T Consensus 10 ~~~~~~~~~~g~~~~d~~g~~~~~i~l~~~---~~-~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~ 85 (392)
T 3b1d_A 10 FQTAPNRLSHHTYKWKETETDPQLLPAWIA---DM-DFEVMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQY 85 (392)
Confidence 44667788999999999999 99999887 33 33 78899999999887531 221 135667777777766654
Q ss_pred --CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 91 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 91 --~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
..++|++|+|+++|+..+++.+ ..+++.|++..++||+....+. ..|..+..++.....+ .+. .
T Consensus 86 ~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~---~ 151 (392)
T 3b1d_A 86 SFDKEDIVFVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVR-LNNRKLVSNSLKEENG--------LFQ---I 151 (392)
Confidence 4689999999999999999854 3456789999999998665433 2333333322211111 000 1
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc----Cccccc--cC
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQEY--FG 241 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~----~~~~~~--~~ 241 (411)
|++++++.+++ .++++++++..++++|.+.+ .+++++|+++|++||+++|+||+|+++ +.|. ....+. .+
T Consensus 152 d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 228 (392)
T 3b1d_A 152 DFEQLENDIVE--NDVKLYLLCNPHNPGGRVWE-REVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKD 228 (392)
Confidence 77888888763 24566766666667776644 445999999999999999999999988 5542 222221 34
Q ss_pred CCcchhhhhhhcc-CCcccccccccH-HHHHHhcCCCCcccccC-CCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 015230 242 VTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 316 (411)
Q Consensus 242 ~~~d~~~~sK~~~-~G~~~g~~~~~~-~~~~~~~~~~~~~~~~t-~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~ 316 (411)
..+++.|+||+++ +|+|+||+++++ ++++.+.... ...+ .+.++++++++.++++...+ ++++++++++.++
T Consensus 229 ~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (392)
T 3b1d_A 229 FALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ---LVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQF 305 (392)
Confidence 4566789999998 899999998864 4887776422 1122 24578888888888764222 4556666667777
Q ss_pred HHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------Ccceee
Q 015230 317 LTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFT 388 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~ 388 (411)
+.+.|++. .+......+ .++++|+++... ..+..++.+.|. ++||++.++. .+.+|+
T Consensus 306 l~~~l~~~---~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi 370 (392)
T 3b1d_A 306 AVEYFAQE---APRLKVMKPQGTYLIWLDFSDY------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARL 370 (392)
Confidence 76666652 122222233 355556777421 112357888886 7899999863 235888
Q ss_pred ecCCCHHHHHHHHHHHHHHHH
Q 015230 389 SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 389 ~~~~t~~~i~~~i~~l~~~~~ 409 (411)
++..+++++++++++|+++++
T Consensus 371 ~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 371 NIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 888889999999999998875
No 66
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=6.5e-32 Score=253.81 Aligned_cols=328 Identities=12% Similarity=-0.004 Sum_probs=226.1
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.+| .++||.++. ++++ .+|.+++++.+.+.....|+ +..++++++++++.+.++ .++++++|+|+++++.
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 466 889999885 4444 68999999998875533343 246788999999988775 5789999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+...++++.|++..++|++.... ....|..+..++.....++ ++ ++++.+.. ++++
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~ 157 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGA-AKFIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDL 157 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHH-HHHTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHH-HHHcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCE
Confidence 9998642211168899999999965443 3334444443332211121 11 34445542 3456
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc-c--------ccCCCcchhhhhhhcc-C
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-G 255 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~-~--------~~~~~~d~~~~sK~~~-~ 255 (411)
++++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+..... . ..+..+.+.|+||+++ +
T Consensus 158 v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 158 VILNSPNNPTGRTLS-LEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEcCCCCCcCCCCC-HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 666555666777664 455999999999999999999999988 55532221 1 2344456779999997 7
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
|+|+||+++++++++.+.. .....+++.++++++++.++++. .+..++.++..+..++.+.+... ++. ..
T Consensus 237 G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~ 306 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKA---FRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NTL--IY 306 (376)
T ss_dssp GGCCEEEEECHHHHHHHHH---HHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TCC--CC
T ss_pred cceeEEEeeCHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC
Confidence 9999999999999888763 22344678899999998888763 22233333333333343333322 222 34
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..|+++|+++. +..++.+.|.+ +||.+.++. .+.+|+++..|++++++++++|++
T Consensus 307 ~~~~~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 307 PYSFYVYLPVQ----------------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376)
T ss_dssp SBSSEEEEECS----------------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEECC----------------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 56888888873 12678888887 899998752 345789887799999999999999
Q ss_pred HHHh
Q 015230 407 VLRQ 410 (411)
Q Consensus 407 ~~~~ 410 (411)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8865
No 67
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=2.5e-31 Score=252.12 Aligned_cols=334 Identities=12% Similarity=0.077 Sum_probs=234.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC-C--C-CEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP-S--I-EMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~-~--~-~~v~~~~~g~~a 104 (411)
.|++++||.++. .+++ .+|.+++++.++++.. ..|. +..++++.+++++.+.++ . + ++|++|+|+++|
T Consensus 45 ~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 467899999885 3455 6889999999987541 1222 346778888888877665 2 3 799999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.+++.+ ..+++.|++..++|++....+ ...|..+..++... .++. .|++++++.++ +++
T Consensus 122 l~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~~~------------~d~~~l~~~l~---~~~ 182 (404)
T 2o1b_A 122 LVAVPTCV--INPGDYVLLPDPGYTDYLAGV-LLADGKPVPLNLEP-PHYL------------PDWSKVDSQII---DKT 182 (404)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCSSHHHHH-HHTTCEEEEEECCT-TTCC------------CCGGGSCHHHH---HHE
T ss_pred HHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHCCCEEEEeccCc-ccCc------------CCHHHHHHhhc---cCc
Confidence 99999853 345688999999999865443 34454444433221 1211 16788888876 357
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-cccc---cCCCcchhhhhhhcc-CCcc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY---FGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~---~~~~~d~~~~sK~~~-~G~~ 258 (411)
++|+++..+|++|.+. +.+++++|.++|++||++||+||+|+++ ..|... .... .+....+.|+||+++ +|+|
T Consensus 183 ~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (404)
T 2o1b_A 183 KLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFR 261 (404)
T ss_dssp EEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGC
T ss_pred eEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhh
Confidence 7777776666677765 5666999999999999999999999987 444211 1111 122344669999998 7999
Q ss_pred cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 259 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
+||+++++++++.+.. .....+++.++++++++.++++..+. ++.+++++++.+++.+.|+++ ++......
T Consensus 262 ~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 334 (404)
T 2o1b_A 262 VGFAVGNKDMIQALKK---YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----DLPFVHAK 334 (404)
T ss_dssp CEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCC
T ss_pred eEeEecCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCeecCCC
Confidence 9999999999888763 22334677889999998888875322 455566667777777777664 33322233
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.|+++|+++... .+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.++++
T Consensus 335 ~g~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 335 GGIYVWLETPPG-------------YDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp BSSEEEEECCTT-------------CCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred cceEEEEeCCCC-------------CCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 466788887421 11256778776 5799999863 345899877789999999999998876
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 402 ~ 402 (404)
T 2o1b_A 402 L 402 (404)
T ss_dssp G
T ss_pred h
Confidence 4
No 68
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=1.7e-31 Score=254.11 Aligned_cols=339 Identities=13% Similarity=0.108 Sum_probs=229.9
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~ 103 (411)
.+|++++||.++. .+++ .+|.+++++.++++... .|+ +..++++.+++++.+.++ .+ +++++|+||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4688999999985 3455 78999999998887531 222 235677888888876554 35 69999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|+..+++.+ ..+++.|++..++||+....+. ..|..+..++.....++. .|++++++.++ ++
T Consensus 111 a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~------------~d~~~l~~~i~---~~ 172 (412)
T 2x5d_A 111 GLAHLMLAT--LDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDFF------------NELERAIRESI---PK 172 (412)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCHH------------HHHHHHHHTEE---SC
T ss_pred HHHHHHHHh--CCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCCC------------CCHHHHHHhcc---cC
Confidence 999999853 3456789999999997554433 344433332221110110 15677777665 24
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccc-ccc---cCCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGA-QEY---FGVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~-~~~---~~~~~d~~~~sK~~~-~G 256 (411)
+++|+++.++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..|. ... ... .+....+.|+||+++ +|
T Consensus 173 ~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 55555544455667654 4566999999999999999999999987 5442 111 111 233344679999998 89
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+|+||+++++++++.+.. .....+++.++++++++.++++..++ ++++++++++.+++.+.|+++ ++....
T Consensus 252 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 324 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALAR---IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMVEN 324 (412)
T ss_dssp SCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCC
T ss_pred cceEEEEcCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecC
Confidence 999999999999888763 22334678899999998888864322 455667777777777777765 322222
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
...|+++|+++... . . ..+..++.+.|.+ +||.+.++. .+.+|+++..+++++++++++|.++
T Consensus 325 ~~~g~~~~~~~~~~-~--------~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 325 PKASMYVWAKIPEP-Y--------A-HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKAM 394 (412)
T ss_dssp CSBSSEEEEECCTT-T--------G-GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEEcCCc-c--------C-CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 33467888887421 0 0 0123578888865 699998863 2458998777999999999999998
Q ss_pred HHh
Q 015230 408 LRQ 410 (411)
Q Consensus 408 ~~~ 410 (411)
+++
T Consensus 395 l~~ 397 (412)
T 2x5d_A 395 FRA 397 (412)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 69
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=1.1e-30 Score=246.56 Aligned_cols=334 Identities=14% Similarity=0.121 Sum_probs=233.9
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCE-EEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~-v~~~~~g~~a~~~ 107 (411)
..++||.++. .+++ .+|++.+++.++++... .|+ +..++++.+++++.+.++ .+++ +++|+||++|+..
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 4678998885 3344 68999999999987642 232 245778888888877654 4678 9999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.+ ..+++.|++.+++||+.... ....|..+..++.....++. -|++++++.++. +++++
T Consensus 103 ~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~---~~~~v 164 (389)
T 1gd9_A 103 GLSAF--LKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDEFR------------LNVDELKKYVTD---KTRAL 164 (389)
T ss_dssp HHTTT--CCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGTTC------------CCHHHHHHHCCT---TEEEE
T ss_pred HHHHh--CCCCCEEEEcCCCchhHHHH-HHHCCCEEEEeccCCccCCC------------CCHHHHHHhcCc---CceEE
Confidence 99743 34568899999999985543 34445544443322111110 188999988863 56777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc-C-CCcc--hhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-G-VTPD--LTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~-~-~~~d--~~~~sK~~~-~G~~~g 260 (411)
++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..|. ......+ + ...| +.|+||+++ +|+|+|
T Consensus 165 ~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (389)
T 1gd9_A 165 IINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLG 243 (389)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCE
T ss_pred EEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceE
Confidence 7766677777664 4666999999999999999999999987 5443 2222122 1 1223 568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 336 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (411)
|+++++++++.+.. .....+++.++++++++.++++.... ++++++++++.+++.+.|+++ ++......
T Consensus 244 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 316 (389)
T 1gd9_A 244 FVAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVKPK 316 (389)
T ss_dssp EEECCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCCC
T ss_pred EEEECHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCC
Confidence 99999998888763 22334677888999888888764322 445566667777777777664 32222233
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.|+++|+++... ..+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.++++
T Consensus 317 ~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~~ 384 (389)
T 1gd9_A 317 GAFYIFPRIRDT------------GLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLK 384 (389)
T ss_dssp BTTEECCBCGGG------------TCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEeccCC------------CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 466777766321 112367888887 8899998863 346899887899999999999999887
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 385 ~ 385 (389)
T 1gd9_A 385 E 385 (389)
T ss_dssp H
T ss_pred h
Confidence 5
No 70
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=1.6e-30 Score=246.15 Aligned_cols=330 Identities=13% Similarity=0.091 Sum_probs=234.9
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-----CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-----~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ 102 (411)
+++.++||.++ ++....+|.+++++.++++.. ..|+ +..++++++++++.+.++ .+++|++|+|++
T Consensus 33 ~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~ 109 (398)
T 3ele_A 33 GKENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAA 109 (398)
T ss_dssp CGGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred CCCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHH
Confidence 35678999988 444347899999999998763 2232 235788899999987765 578999999999
Q ss_pred HHHHHHHHHHHhccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+|+..+++.+ ..++ +.|++.+++|++.... ....|..+..++.... .++ |++++++.++
T Consensus 110 ~al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~-- 170 (398)
T 3ele_A 110 ASLSICFRAL--TSDAYDEFITIAPYFPEYKVF-VNAAGARLVEVPADTEHFQI--------------DFDALEERIN-- 170 (398)
T ss_dssp HHHHHHHHHH--CCSTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCTTTSSC--------------CHHHHHHTCC--
T ss_pred HHHHHHHHHH--cCCCCCEEEEeCCCchhhHHH-HHHcCCEEEEEecCCcCCcC--------------CHHHHHHHhC--
Confidence 9999999854 3455 7899999999875433 3344554444333211 111 8899998876
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH------hCCEEEEecccccc-ccccC--ccccccCCCcchhhhhh
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGK 251 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~------~~~~li~De~~~g~-~~g~~--~~~~~~~~~~d~~~~sK 251 (411)
+++++++++.++|++|.+.+ .+.+++|.++|++ ||+++|+||+|++| ..|.. ...+..+....+.|+||
T Consensus 171 -~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 248 (398)
T 3ele_A 171 -AHTRGVIINSPNNPSGTVYS-EETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSK 248 (398)
T ss_dssp -TTEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTT
T ss_pred -cCCCEEEEcCCCCCCCCCCC-HHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhh
Confidence 35777777666777777665 4449999999999 99999999999988 55522 22233344455679999
Q ss_pred hcc-CCcccccccccHHH------HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 252 IIG-GGLPVGAYGGRRDI------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 252 ~~~-~G~~~g~~~~~~~~------~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+++ +|+|+||+++++++ .+.+... .....+++.++++++++.+.++ ....+++++++.+++.+.|+++
T Consensus 249 ~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~ 323 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEVYDKAELYAAVCGA--GRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI 323 (398)
T ss_dssp TSSCTTTCCEEEECCTTSTTHHHHHHHHHHH--HHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccceeEEEEEcchhhhHHHHHHHHHHH--hhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc
Confidence 999 89999999887763 2222210 0112255667777777655443 4456788999999999999886
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|+++... +..++.+.|.++||.+.++. .+.+|+++.+++++++++
T Consensus 324 ----g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~ 385 (398)
T 3ele_A 324 ----GYHCFKPDGAFYMFVKALED--------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHS 385 (398)
T ss_dssp ----TCCEECCSBSSEEEEECSSS--------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHH
T ss_pred ----CCeecCCCeeEEEEEEcCCC--------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHH
Confidence 33333334466688877321 13678888999999999874 346899888999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 386 l~~l~~~l~~ 395 (398)
T 3ele_A 386 MPAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 71
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.97 E-value=1e-30 Score=247.03 Aligned_cols=334 Identities=15% Similarity=0.110 Sum_probs=229.1
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+|+.++||.++. .+++ .+|++++++.+++++. ..|. +..++++++++++.+.++ .+++|++|+||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 4788999999985 3344 4888999999988763 2232 245778888888877654 578999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 185 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 185 (411)
..+++.. ..+++.|++..++|++.... ....|..+..++.....++. -|++++++. +++
T Consensus 105 ~~~~~~l--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~------~~~ 163 (391)
T 3h14_A 105 LLAFTAL--FDSGDRVGIGAPGYPSYRQI-LRALGLVPVDLPTAPENRLQ------------PVPADFAGL------DLA 163 (391)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHHTTCEEEEEECCGGGTTS------------CCHHHHTTS------CCS
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHHH-HHHcCCEEEEeecCcccCCC------------CCHHHHHhc------CCe
Confidence 9999853 34568899999999875433 33344433333222111111 077777654 355
Q ss_pred EEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccCCCcchhhhhhhcc-CCcccccc
Q 015230 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 186 ~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
+|+++.++|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+.. ...+..+....+.|+||.++ +|+|+||+
T Consensus 164 ~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~ 242 (391)
T 3h14_A 164 GLMVASPANPTGTMLD-HAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWM 242 (391)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEE
T ss_pred EEEECCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEE
Confidence 6666666777777665 445999999999999999999999988 55532 22222223334558999998 89999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecce
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGM 340 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~ 340 (411)
++++++++.+.. .....+++.++++++++.++++.... ++.+++++++.+++.+.|+++ +..... ...|++
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~ 315 (391)
T 3h14_A 243 VVPEDQVRVVER---IAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA----GFTRIAPPDGAFY 315 (391)
T ss_dssp ECCGGGHHHHHH---HHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCCCBCCCCBTTE
T ss_pred EeCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCCcccCCCeeEE
Confidence 999888887763 22344678889998888887761111 445566666666666666654 433322 234577
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC-------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~-------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++++.... .+..++.+.|.++ ||.+.++. ...+|+++..+++++++++++|++++++
T Consensus 316 ~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 316 VYADVSDLT------------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp EEEECTTTC------------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCccC------------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 888774211 1236788887775 99998863 2358998888999999999999998875
No 72
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=8.9e-31 Score=247.17 Aligned_cols=332 Identities=16% Similarity=0.164 Sum_probs=235.2
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.++||.++. .+++ .+|.+++++.+.++... .|+ +..++++++++++.+.++ .++++++|+||++|+.
T Consensus 39 ~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 577899999885 3455 47899999999987632 332 236678888888877554 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+ ..+++.|++.+++|++.... ....|..+..++.....++. -|++++++.++. ++++
T Consensus 116 ~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~---~~~~ 177 (389)
T 1o4s_A 116 NAFMAL--LDPGDEVIVFSPVWVSYIPQ-IILAGGTVNVVETFMSKNFQ------------PSLEEVEGLLVG---KTKA 177 (389)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECCGGGTTC------------CCHHHHHHTCCT---TEEE
T ss_pred HHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEEecCCccCCC------------CCHHHHHHhccc---CceE
Confidence 999864 34567899999999975443 33444443333222101110 178999888763 5777
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc----cCCCcchhhhhhhcc-CCcccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY----FGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~----~~~~~d~~~~sK~~~-~G~~~g 260 (411)
|++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..|....... .+.+..+.|+||+++ +|+|+|
T Consensus 178 v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 256 (389)
T 1o4s_A 178 VLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVG 256 (389)
T ss_dssp EEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceE
Confidence 77776677778765 4566999999999999999999999977 4442211111 223333568999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecce
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 340 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 340 (411)
|+++++++++.+.. .....+++.+++++.++.++++.. .++++++++++.+++.+.|+++ .+... ....|++
T Consensus 257 ~l~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~~ 328 (389)
T 1o4s_A 257 YLISSEKVATAVSK---IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAFY 328 (389)
T ss_dssp EEECCHHHHHHHHH---HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSSE
T ss_pred EEEeCHHHHHHHHH---HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcceE
Confidence 99999998887763 223346777888888877776432 2556777888888888888775 22222 2334667
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+.+. . +..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|.+++++
T Consensus 329 ~~~~~~-~--------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 329 LFFKVR-G--------------DDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEEECS-S--------------CHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEeCC-C--------------CHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 787763 0 1257888887 8899998874 2468998778999999999999998764
No 73
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=1.3e-30 Score=243.77 Aligned_cols=320 Identities=12% Similarity=0.054 Sum_probs=223.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
+++.++||.++. ++++ .+|++++++.+.++... .|+.....++.+++++.++ .++++++|+||++|++.+++..
T Consensus 30 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~--~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~ 104 (363)
T 3ffh_A 30 GLTKITKLSSNE--NPLG-TSKKVAAIQANSSVETE--IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL 104 (363)
T ss_dssp TCSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCC--BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH
Confidence 346889999984 4444 78999999988776532 3344445677777777776 6789999999999999999853
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++.|++..++|++.... ....|..+..++......+ |++++++.++ +++++++++++
T Consensus 105 --~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~---~~~~~v~~~~p 164 (363)
T 3ffh_A 105 --LDTTTNTVMATPTFVQYRQN-ALIEGAEVREIPLLQDGEH--------------DLEGMLNAID---EKTTIVWICNP 164 (363)
T ss_dssp --CSTTCEEEEEESSCHHHHHH-HHHHTCEEEEEECCTTSCC--------------CHHHHHHHCC---TTEEEEEEESS
T ss_pred --ccCCCEEEEcCCChHHHHHH-HHHcCCEEEEecCCCCCCc--------------CHHHHHHhcc---cCCCEEEEeCC
Confidence 45678999999999874433 3344554444333221111 8999998886 36788887777
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHh--CCEEEEecccccc-ccccCccccccCCCcc----hhhhhhhcc-CCcccccccc
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPD----LTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~--~~~li~De~~~g~-~~g~~~~~~~~~~~~d----~~~~sK~~~-~G~~~g~~~~ 264 (411)
++++|.+.+ .+++.++|+.+ |+++|+||+|++| + +...........++ +.|+||.++ +|+|+||+++
T Consensus 165 ~nptG~~~~----~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 239 (363)
T 3ffh_A 165 NNPTGNYIE----LADIQAFLDRVPSDVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA 239 (363)
T ss_dssp CTTTCCCCC----HHHHHHHHTTSCTTSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE
T ss_pred CCCcCCCcC----HHHHHHHHHhCCCCcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeec
Confidence 888888877 44555555444 9999999999988 6 43222111111222 568999998 7999999999
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+.... .+++.++++++++.++++.... ++.+++++++.+++.+.|++. .......+.|.++++
T Consensus 240 ~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~g~~~~~~~~~~~~~ 310 (363)
T 3ffh_A 240 DKEIIRQLNIVR-----PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF----EKVKLYPANGNFVLI 310 (363)
T ss_dssp CHHHHHHHHHTC-----CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC----TTCEECCCCSSEEEE
T ss_pred CHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC----CCceECCCCCeEEEE
Confidence 999998887422 2678899999999988863221 444555666666666666552 222333556888888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
++.. +..++.+.|.++||.+.++. .+.+|+++. |++++++++++|++++
T Consensus 311 ~~~~---------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 311 DLGI---------------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ECSS---------------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred ECCC---------------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 7732 13678999999999999875 345788866 9999999999998763
No 74
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=3.1e-30 Score=243.25 Aligned_cols=330 Identities=15% Similarity=0.107 Sum_probs=231.6
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMG 107 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~ 107 (411)
..++||.++. .+++ .+|.+++++.++++.. ..|. +..++++++++++.+.++ .++ ++++|+|+++|+..
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 3578998884 2345 7899999999998763 2332 246678888888877654 467 99999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 108 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 108 al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
+++.+ ..+++.|++.+++|++... .....|..+..++....... .|++++++.++ ++++++
T Consensus 107 ~~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~l~---~~~~~v 167 (386)
T 1u08_A 107 AITAL--VRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHFR-------------VDWQEFAALLS---ERTRLV 167 (386)
T ss_dssp HHHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTCC-------------CCHHHHHHHCC---TTEEEE
T ss_pred HHHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEeecCcccCc-------------CCHHHHHHhhc---ccCEEE
Confidence 99854 3456889999999997544 33344544443332211010 18999998885 367777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc----Ccccc-ccCCCcchhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY----GGAQE-YFGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~----~~~~~-~~~~~~d~~~~sK~~~-~G~~~g 260 (411)
++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..|. ....+ ..+..+.+.|+||+++ +|+|+|
T Consensus 168 ~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 246 (386)
T 1u08_A 168 ILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVG 246 (386)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCE
T ss_pred EEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceE
Confidence 7777777778765 4566999999999999999999999987 5442 11121 2345556779999999 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
|+++++++++.+.. .....+++.++++++++.++++.... ++++++++++.+++.+.|+++ ++.......|
T Consensus 247 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g 319 (386)
T 1u08_A 247 YCVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES----RLEILPCEGT 319 (386)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS----SCEECCCCBS
T ss_pred EEEcCHHHHHHHHH---HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCce
Confidence 99999998887763 22334677888888888888875422 456666666666666666543 3332223347
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
+++|+++.... ..+..++.+.|. ++||.+.++. .+.+|+++..+++++++++++|++
T Consensus 320 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 320 YFLLVDYSAVS-----------TLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp SEEEEECTTTC-----------CSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEEecCCCC-----------CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 78888874310 011256777776 6799998763 245899888899999999999864
No 75
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=2e-29 Score=240.48 Aligned_cols=357 Identities=13% Similarity=0.082 Sum_probs=235.5
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC---CCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEA 104 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~---~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a 104 (411)
+..++||..+. ..++ .+|.+++++.++++... .|. +..++++.+++++.+.++ .+ ++|++|+||++|
T Consensus 27 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 45789999884 2222 78999999999988632 332 235778899999987665 23 689999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC---CCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+..+++.+ ..+++.|++..++|++... .....|..+..++... ..|.... ...+. -|++++++.++
T Consensus 104 ~~~~~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~G~~~~--~~~~~---~d~~~l~~~~~--- 172 (422)
T 3fvs_A 104 LFTAFQAL--VDEGDEVIIIEPFFDCYEP-MTMMAGGRPVFVSLKPGPIQNGELGS--SSNWQ---LDPMELAGKFT--- 172 (422)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECBCCCCCSSSCCB--GGGSB---CCHHHHHTTCC---
T ss_pred HHHHHHHH--cCCCCEEEEcCCCchhhHH-HHHHcCCEEEEEeccccccccccccc--ccCCC---CCHHHHHhhcC---
Confidence 99999853 4567789999999997543 3334454444433221 0110000 00001 17888888775
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc----CCCcchhhhhhhcc-
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG- 254 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~----~~~~d~~~~sK~~~- 254 (411)
++++++++++++|++|.+. +++.+++|+++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||.++
T Consensus 173 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~ 251 (422)
T 3fvs_A 173 SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA 251 (422)
T ss_dssp TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTC
T ss_pred CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCC
Confidence 3677777777777788776 4556999999999999999999999987 55531 111112 22345668999998
Q ss_pred CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-----KEPGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 255 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+|+|+||+++++++++.+.. .....+++.++++++++.++++.. ..++..++.++..+..++.+.+...+.+
T Consensus 252 ~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 328 (422)
T 3fvs_A 252 TGWKVGWVLGPDHIMKHLRT---VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG 328 (422)
T ss_dssp GGGCCEEEECCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccceEEEEEeCHHHHHHHHH---HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 79999999999998887762 234457788999999999888751 1133333444444444444433333335
Q ss_pred CceEEeeecceEEEEEecCCC--CCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----------CcceeeecCCCHH
Q 015230 330 HAICGGYISGMFGFFFTEGPV--YNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------FEAGFTSLAHSSD 395 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~-----------~~~~~~~~~~t~~ 395 (411)
+.......|+++|+++..... ..+. .........++.+.+ .++||.+.++. .+.+|+++..+++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e 406 (422)
T 3fvs_A 329 LKPIIPQGSYFLITDISDFKRKMPDLP--GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEA 406 (422)
T ss_dssp CEEEBCSBSSEEEEECHHHHHHCCCCC--CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHH
T ss_pred CeecCCCeeeEEEEechhhcccccccc--cccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHH
Confidence 444445668888888743110 0000 000000024566654 45799998864 2457999888999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++++++++|+++++++
T Consensus 407 ~i~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 407 TLQAMDEKLRKWKVEL 422 (422)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998764
No 76
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.97 E-value=3.8e-31 Score=247.50 Aligned_cols=326 Identities=16% Similarity=0.128 Sum_probs=216.3
Q ss_pred ecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHH
Q 015230 32 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLR 110 (411)
Q Consensus 32 ~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~ 110 (411)
+.+|+.++||.++. ++++ .+|++++++.++++....| +.....++.+.+++.++ .++++++|+|+++++..+++
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~ 94 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS 94 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHH
Confidence 35678899999885 4566 7899999999988763233 22234556666666666 56899999999999999998
Q ss_pred HHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC-HHHHHHHHHcCCCcEEEEEE
Q 015230 111 LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 111 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~~~~vi~ 189 (411)
.+ +++.|++..++||+....+ ...|..+..++.....++ + ++++.+.+. ++++++++
T Consensus 95 ~~----~gd~vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~--------------~~l~~~~~~~~---~~~~~v~i 152 (364)
T 1lc5_A 95 GL----KPRRAMIVTPGFAEYGRAL-AQSGCEIRRWSLREADGW--------------QLTDAILEALT---PDLDCLFL 152 (364)
T ss_dssp HH----CCSEEEEEESCCTHHHHHH-HHTTCEEEEEECCGGGTT--------------CCCTTHHHHCC---TTCCEEEE
T ss_pred Hc----CCCeEEEeCCCcHHHHHHH-HHcCCeEEEEeCCccccc--------------chhHHHHHhcc---CCCCEEEE
Confidence 54 4589999999999755443 333443333222110111 1 122333332 34455554
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cc-ccccCCCcchhhhhhhcc-CCccccccc-c
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEYFGVTPDLTTLGKIIG-GGLPVGAYG-G 264 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~-~~~~~~~~d~~~~sK~~~-~G~~~g~~~-~ 264 (411)
..++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..+.. .. .+..+....+.|+||+++ +|+|+||++ +
T Consensus 153 ~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 231 (364)
T 1lc5_A 153 CTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNS 231 (364)
T ss_dssp ESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred eCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEEC
Confidence 33355667654 5677999999999999999999999977 43321 11 122333445669999998 799999998 9
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|++ .+......+.|+++++
T Consensus 232 ~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~g~~~~~ 302 (364)
T 1lc5_A 232 DDAAMARMRRQ-----QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQ----LPLLTVYPGRANYLLL 302 (364)
T ss_dssp CHHHHHHHHHH-----SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHT----STTEEECCCSSSEEEE
T ss_pred CHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc----CCCCEECCCCCeEEEE
Confidence 99998887632 13677889999988887753111 33444455555555555543 3333333456788888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
++... ..++.+.|.++||.+.++. .+.+|+++. +.++++++++.|++++++
T Consensus 303 ~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 303 RCERE---------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EESCT---------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC--
T ss_pred ECCCc---------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhc
Confidence 77421 1367888899999999864 235788865 688899999999987654
No 77
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=2.5e-30 Score=247.02 Aligned_cols=342 Identities=13% Similarity=0.037 Sum_probs=229.5
Q ss_pred cCCCEEEeccCCcccccc--CCCcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhC-C-CCCEEEEeCChHH
Q 015230 33 IDGNEYIDYVGSWGPAII--GHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAV-P-SIEMVRFVNSGTE 103 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~--g~~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~-~-~~~~v~~~~~g~~ 103 (411)
..|+.++||..+.. ... ...+|.+++++.+.++......| ..++++.+++++...- + ..+++++|+||++
T Consensus 51 ~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~ 129 (427)
T 3dyd_A 51 NPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQ 129 (427)
T ss_dssp CTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHH
T ss_pred cCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHH
Confidence 45788999999842 211 23789999999999987432222 2455555665554320 0 4789999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|++.+++.+ ..+++.|++..++|++... .....|..+..++.....+. .+ |++++++.++. +
T Consensus 130 al~~~~~~l--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~---------~~---d~~~l~~~l~~---~ 191 (427)
T 3dyd_A 130 AIDLCLAVL--ANPGQNILVPRPGFSLYKT-LAESMGIEVKLYNLLPEKSW---------EI---DLKQLEYLIDE---K 191 (427)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEEEGGGTT---------EE---CHHHHHSSCCT---T
T ss_pred HHHHHHHHh--cCCCCEEEEcCCCchhHHH-HHHHcCCEEEEEecccccCC---------CC---CHHHHHHHhcc---C
Confidence 999999864 3467889999999986443 33334443333222110110 00 78888887763 4
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccccCCCcchh---hhhhhcc-CCc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TLGKIIG-GGL 257 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~~~~~d~~---~~sK~~~-~G~ 257 (411)
+++++++..+|++|... +.+++++|+++|++||+++|+||+|++| +.|.. .....++..++++ |+||.++ +|+
T Consensus 192 ~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~ 270 (427)
T 3dyd_A 192 TACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGW 270 (427)
T ss_dssp EEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGG
T ss_pred CCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCc
Confidence 56555555567777655 5666999999999999999999999988 55532 2333344444444 8999987 699
Q ss_pred cccccccc-------HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 258 PVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 258 ~~g~~~~~-------~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
|+||++++ +++++.+.. ....+++.++++++++.++++.... ++.+++++++.+++.+.|+++
T Consensus 271 riG~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 343 (427)
T 3dyd_A 271 RLGWILIHDRRDIFGNEIRDGLVK----LSQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI--- 343 (427)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH----HHHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ceEEEEecCcchhhHHHHHHHHHH----HHhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99999876 467666642 1122577899999999988874221 455566666666666666653
Q ss_pred cCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC----CcceeeecCCCHHHHHHHH
Q 015230 328 AGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 401 (411)
Q Consensus 328 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i 401 (411)
+..... ...|+++++.+..... +...+..++.+.|. ++||++.++. .+.+|+++.++++++++++
T Consensus 344 -~g~~~~~p~~g~~~~~~l~~~~~--------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~~~e~i~~~l 414 (427)
T 3dyd_A 344 -PGLRPVRPSGAMYLMVGIEMEHF--------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITVPEVMMLEAC 414 (427)
T ss_dssp -TTEEEECCSBTTEEEEEECGGGC--------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCSCHHHHHHHH
T ss_pred -CCceecCCCeeEEEEEecCHhhc--------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECCCHHHHHHHH
Confidence 433333 4457788888752111 11112356777764 7899999874 3458999889999999999
Q ss_pred HHHHHHHHh
Q 015230 402 TAAEKVLRQ 410 (411)
Q Consensus 402 ~~l~~~~~~ 410 (411)
++|.+++++
T Consensus 415 ~~l~~~l~~ 423 (427)
T 3dyd_A 415 SRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 78
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=4.7e-30 Score=241.59 Aligned_cols=327 Identities=17% Similarity=0.153 Sum_probs=227.7
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
.++||.++. .+++ .++.+.+++.++++....|.. .....++.+.+++.++ .++++++|+||++|++.+++.+ .
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~ 99 (381)
T 1v2d_A 26 GAVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYAP-PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--V 99 (381)
T ss_dssp TCEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCCC-TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--C
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--C
Confidence 378998885 3344 789999999999876222221 1123556666666666 5678999999999999999864 4
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++.+++||+... .....|..+..++..... .... .|++++++.++ +++++|++++++++
T Consensus 100 ~~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~--------~~~~---~d~~~l~~~l~---~~~~~v~~~~~~np 164 (381)
T 1v2d_A 100 GPGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGFR---LDLSALEKALT---PRTRALLLNTPMNP 164 (381)
T ss_dssp CTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEEE---CCHHHHHTTCC---TTEEEEEEESSCTT
T ss_pred CCCCEEEEcCCCchhHHH-HHHHcCCEEEEEeCCCCC--------ccCC---cCHHHHHHhcC---cCCEEEEECCCCCC
Confidence 567889999999997543 333444433332221000 0001 18898888775 35788887777777
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-c-ccc-ccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-G-AQE-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~-~~~-~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|.+.+ .+.+++|.++|++||+++|+||+|+++ . |.. . ... ..+..+++.|+||+++ +|+|+||+++++++++
T Consensus 165 tG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~ 242 (381)
T 1v2d_A 165 TGLVFG-ERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMP 242 (381)
T ss_dssp TCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred CCCccC-HHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHH
Confidence 887654 566999999999999999999999977 4 421 1 111 2355667789999998 7999999999988887
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
.+.. .....+++.++++++++.++++.. .+ ++++++++++.+++.+.|++. ++.......|+++++++.
T Consensus 243 ~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~ 315 (381)
T 1v2d_A 243 RLAG---MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFLMAELP 315 (381)
T ss_dssp HHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEEEEECT
T ss_pred HHHH---HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEEEEecC
Confidence 7752 223346778889999988888865 22 456666777777777777663 333322334678888773
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
. . + +.+.+.++||.+.++. .+.+|+++..+++++++++++|.+++++
T Consensus 316 ~-------------~---~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 316 G-------------W---D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS 370 (381)
T ss_dssp T-------------C---C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred h-------------H---h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 2 1 1 5677889999998762 3458888777999999999999988754
No 79
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=4.2e-30 Score=244.38 Aligned_cols=334 Identities=16% Similarity=0.129 Sum_probs=232.7
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCC-EEEEeCChHHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 108 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~~a~~~a 108 (411)
.++||.++. .+++ .+|.+++++.++++.. ..|. +..++++++++++.+.++ .++ ++++|+||++|+..+
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 478998884 3344 6899999999999873 2332 235778888888887654 466 999999999999999
Q ss_pred HHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEE
Q 015230 109 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 187 (411)
Q Consensus 109 l~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v 187 (411)
++.+ ..+++.|++.+++|++... .....|..+..++.... .+ .. .|++++++.++ +++++|
T Consensus 103 ~~~~--~~~gd~Vl~~~~~y~~~~~-~~~~~g~~~~~v~~~~~~~~---------~~---~d~~~l~~~l~---~~~~~v 164 (411)
T 2o0r_A 103 VLGL--VEPGSEVLLIEPFYDSYSP-VVAMAGAHRVTVPLVPDGRG---------FA---LDADALRRAVT---PRTRAL 164 (411)
T ss_dssp HHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEETTE---------EE---CCHHHHHHHCC---TTEEEE
T ss_pred HHHh--cCCCCEEEEeCCCcHhHHH-HHHHcCCEEEEeeccccccC---------CC---CCHHHHHHhhc---cCceEE
Confidence 9864 3456889999999997543 33344443333222100 00 00 28999998886 367777
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-ccccc----cCCCcchhhhhhhcc-CCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~----~~~~~d~~~~sK~~~-~G~~~g 260 (411)
++++++|++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. ..... .+....+.|+||.++ +|+|+|
T Consensus 165 ~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 243 (411)
T 2o0r_A 165 IINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIG 243 (411)
T ss_dssp EEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEE
T ss_pred EEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEE
Confidence 7777777788765 4666999999999999999999999977 54421 11111 233444679999998 799999
Q ss_pred cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeec
Q 015230 261 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 338 (411)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 338 (411)
|+++++++++.+.. .....+++.++++++++.++++...+ ++++++++++.+++.+.|+++ ++.......|
T Consensus 244 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g 316 (411)
T 2o0r_A 244 WACGPAELIAGVRA---AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGT 316 (411)
T ss_dssp EEECCHHHHHHHHH---HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBS
T ss_pred EEeeCHHHHHHHHH---HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCee
Confidence 99999998887763 22233566677888888888865322 556677777777777777765 3332223457
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC-----------------CcceeeecCCCHHHHHHH
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----------------~~~~~~~~~~t~~~i~~~ 400 (411)
+++|+++.... ..+..++.+.|. ++||.+.++. .+.+|+++..++++++++
T Consensus 317 ~~~~~~~~~~~-----------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~ 385 (411)
T 2o0r_A 317 YFLCADPRPLG-----------YDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEA 385 (411)
T ss_dssp SEEEEECGGGT-----------CCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHH
T ss_pred EEEEEecCCCC-----------CCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHH
Confidence 78898884310 011256777776 6799998752 235899888899999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 386 ~~~l~~~~~~ 395 (411)
T 2o0r_A 386 IRRLSVLAER 395 (411)
T ss_dssp HHHHGGGGC-
T ss_pred HHHHHHHHhc
Confidence 9999886643
No 80
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=4.9e-30 Score=241.77 Aligned_cols=336 Identities=16% Similarity=0.174 Sum_probs=229.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 106 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~ 106 (411)
.|+.++||..+. .+++ .++.+.+++.+.++.. ..|. +..++++++++++.+.++ .+++|++|+|+++|+.
T Consensus 29 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 456788998873 2233 5788999999988763 2232 346778899999987665 4689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.. ..+++.|++.+++|++... .....|..+..++.....++. -|++++++.++ +++++
T Consensus 106 ~~~~~l--~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~ 167 (385)
T 1b5p_A 106 NLFQAI--LDPGDEVIVLSPYWVSYPE-MVRFAGGVVVEVETLPEEGFV------------PDPERVRRAIT---PRTKA 167 (385)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEECCGGGTTC------------CCHHHHHTTCC---TTEEE
T ss_pred HHHHHh--cCCCCEEEEcCCCchhHHH-HHHHcCCEEEEeecCcccCCC------------CCHHHHHHhcC---CCCEE
Confidence 999853 4567889999999985433 333445444443322111111 17888888775 24666
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc--CCCcchhhhhhhcc-CCcccccc
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF--GVTPDLTTLGKIIG-GGLPVGAY 262 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~--~~~~d~~~~sK~~~-~G~~~g~~ 262 (411)
|++...+|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+.......+ +....+.||||.++ +|+|+||+
T Consensus 168 v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~ 246 (385)
T 1b5p_A 168 LVVNSPNNPTGAVYP-KEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYA 246 (385)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEE
T ss_pred EEEeCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEE
Confidence 555444556666554 455999999999999999999999977 43321111111 22223458999998 79999999
Q ss_pred cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH---Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeee
Q 015230 263 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 337 (411)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (411)
++++++++.+.. .....+++.+.+++.++.++++. ..+ ++.+++++++.+++.+.|+++ ++.......
T Consensus 247 ~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 319 (385)
T 1b5p_A 247 CGPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSG 319 (385)
T ss_dssp ECCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSB
T ss_pred EeCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCe
Confidence 999988887763 22233567788888888888853 222 456677777777888887775 322222344
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|+++|+.+.... .+..++.+.|.++||.+.++.. +.+|+++..+++++++++++|.+++++
T Consensus 320 ~~~~~~~~~~~~------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 320 AFYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384 (385)
T ss_dssp TTEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred eEEEEEecCCCC------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 667777773211 1236788888899999998742 468999889999999999999877653
No 81
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.3e-30 Score=248.95 Aligned_cols=340 Identities=13% Similarity=0.147 Sum_probs=235.8
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC----CCCEEEEeCChHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTE 103 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~ 103 (411)
++.++||.++.. ++.++.++++.+++.++++.. ..|+ +..++++++++++.+.++ .+++|++|+|+++
T Consensus 42 ~~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 457899998864 345778999999999988752 2332 246778888888876643 4679999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--- 180 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--- 180 (411)
|+..+++.. ..+++.|++..++|++....+ ...|..+..++... .+ .|++++++.++..
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 121 ALDLIGKLF--LDDESYCVLDDPAYLGAINAF-RQYLANFVVVPLED-DG--------------MDLNVLERKLSEFDKN 182 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTTCEEEEEEEET-TE--------------ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCCEEEEeCCCcHHHHHHH-HHcCCEEEEeccCC-CC--------------CCHHHHHHHHHhhhhc
Confidence 999999853 345688999999999754433 23343333222110 01 1899999988741
Q ss_pred --CCcEEEEE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc---CCCcchhhhhhh
Q 015230 181 --KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKI 252 (411)
Q Consensus 181 --~~~~~~vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~---~~~~d~~~~sK~ 252 (411)
..++++|+ +...+|++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||+
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~ 261 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV 261 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTT
T ss_pred ccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccc
Confidence 12577764 445556667664 4666999999999999999999999987 54432 222112 223345699999
Q ss_pred ccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc--CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 253 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 253 ~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+++|+|+||+++++++++.+.. .....+++.++++++++.++++.. .+ ++.+++++++.+++.+.|++....+
T Consensus 262 ~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 338 (425)
T 1vp4_A 262 LAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDI 338 (425)
T ss_dssp TCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cccccceEEEeeCHHHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9989999999999998887763 222335667899999998888753 21 4556667777777777777652211
Q ss_pred CCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCC-CHHHHH
Q 015230 329 GHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 398 (411)
Q Consensus 329 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~-t~~~i~ 398 (411)
+.... ....|+++|+++... . +..++.+.|.++||.+.++. .+.+|+++.. ++++++
T Consensus 339 ~g~~~~~~~~g~~~~~~~~~~-~------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~ 405 (425)
T 1vp4_A 339 PGVKWVKSEGGLFIWLTLPEG-F------------DTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIV 405 (425)
T ss_dssp TTCEECCCSBSSEEEEECCTT-C------------CTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHH
T ss_pred CceEEecCCccEEEEEEcCCC-C------------CHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHH
Confidence 11222 234578899988431 0 11467888888899998863 2457887655 799999
Q ss_pred HHHHHHHHHHHh
Q 015230 399 HTITAAEKVLRQ 410 (411)
Q Consensus 399 ~~i~~l~~~~~~ 410 (411)
+++++|++++++
T Consensus 406 ~~l~~l~~~l~~ 417 (425)
T 1vp4_A 406 EGIKRLREVVLE 417 (425)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 82
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=8.5e-30 Score=244.24 Aligned_cols=343 Identities=10% Similarity=0.019 Sum_probs=238.3
Q ss_pred CcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCCC---CCHHHHHHHHHHHhhCC---CCCEEEEe
Q 015230 27 GSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SIEMVRFV 98 (411)
Q Consensus 27 g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~~---~~~~~~~l~~~l~~~~~---~~~~v~~~ 98 (411)
...+.+.+|+.++||.++. ++++ .+|++++++.++++.. ..|.. ..++++.+++++.+.++ .++++++|
T Consensus 35 ~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t 111 (437)
T 3g0t_A 35 VTNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPT 111 (437)
T ss_dssp HHHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred HHHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEe
Confidence 3444456788999999985 3333 7899999999998853 22322 25778888888877654 57899999
Q ss_pred CChHHHHHHHHHHHHhccCCc--EEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHH
Q 015230 99 NSGTEACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 176 (411)
Q Consensus 99 ~~g~~a~~~al~~~~~~~~~~--~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (411)
+|+++|+..+++.+....+++ .|++..++|++....+ ...|..+..++.. ..++. -|+++++++
T Consensus 112 ~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~-~~~~~------------~d~~~l~~~ 177 (437)
T 3g0t_A 112 VGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC-RILGQKFESFDLF-EYRGE------------KLREKLESY 177 (437)
T ss_dssp SHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH-HHHTCCCEEEEGG-GGCTT------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH-HHcCCEEEEEeec-CCCCc------------cCHHHHHHH
Confidence 999999999998642114566 8999999999754443 3445444433221 11110 078999999
Q ss_pred HHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC---------ccccc-cCCCcc
Q 015230 177 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---------GAQEY-FGVTPD 245 (411)
Q Consensus 177 ~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~---------~~~~~-~~~~~d 245 (411)
++. .++++|++..++|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+.. ..+.. .+....
T Consensus 178 l~~--~~~~~v~l~~p~nptG~~~~-~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (437)
T 3g0t_A 178 LQT--GQFCSIIYSNPNNPTWQCMT-DEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYIL 254 (437)
T ss_dssp HTT--TCCCEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEE
T ss_pred Hhc--CCceEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEE
Confidence 843 24555544444666776654 444999999999999999999999877 33321 12211 233344
Q ss_pred hhhhhhhcc-CCcccccccccHHHHH-H-----------------hcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---
Q 015230 246 LTTLGKIIG-GGLPVGAYGGRRDIME-M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--- 303 (411)
Q Consensus 246 ~~~~sK~~~-~G~~~g~~~~~~~~~~-~-----------------~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--- 303 (411)
+.|+||.++ +|+|+||+++++++++ . +.. .....+++.++++++++.++++....
T Consensus 255 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 331 (437)
T 3g0t_A 255 ALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS---ALYALSSGATHSAQWGMAAMLKACNDGEY 331 (437)
T ss_dssp EEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT---HHHHHHSSSCHHHHHHHHHHHHHHHTTSC
T ss_pred EEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHH---HHhhhcCCCCHHHHHHHHHHHhCcHhHHH
Confidence 668999999 8999999999999888 6 552 22334678899999999999887642
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHhcCCceE------Ee-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 304 --PGTYEYLNKITGELTQGIIDAGKKAGHAIC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 304 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
++.+++++++.+++.+.|+++ ++... .. ..|+++|+.+.. .+..++.+.|.++
T Consensus 332 ~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~ 393 (437)
T 3g0t_A 332 NFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKG--------------MDSSKLIEKFVRY 393 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETT--------------CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCC--------------CCHHHHHHHHHHc
Confidence 345556666666666666654 32222 13 567888888841 1136789999999
Q ss_pred CeEeccCCC------cceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 375 GVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 375 Gi~v~~~~~------~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
||.+.++.. +.+|+++.. +++++++++++|++++++
T Consensus 394 gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 394 GMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999998753 458886554 899999999999998764
No 83
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=2.4e-29 Score=235.63 Aligned_cols=319 Identities=15% Similarity=0.127 Sum_probs=230.8
Q ss_pred EeccCCccccccCCCcHHHHHHHHHHHHcC----CCCCC--CCHHHHHHHHHHHhhC--C-CCCEEEEeCChHHHHHHHH
Q 015230 39 IDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA--PCLLENVLAEMVISAV--P-SIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 39 ~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~~--~~~~~~~l~~~l~~~~--~-~~~~v~~~~~g~~a~~~al 109 (411)
+||.++. ++++ .+|++.+++.++++.. ..|.. ..++++.+++++.+.+ + .++++++|+|++++++.++
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 8998885 3455 7899999999998762 22321 1455666666666553 3 5789999999999999999
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~ 189 (411)
+.+ ..+++.|++.+++|++.... ....|..+..++...... .|++++++.++.. ++++|++
T Consensus 110 ~~l--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~ 170 (369)
T 3cq5_A 110 QAF--GGPGRTALGFQPSYSMHPIL-AKGTHTEFIAVSRGADFR--------------IDMDVALEEIRAK--QPDIVFV 170 (369)
T ss_dssp HHH--CSTTCEEEEEESSCTHHHHH-HHHTTCEEEEEECCTTSS--------------CCHHHHHHHHHHH--CCSEEEE
T ss_pred HHh--cCCCCEEEEcCCChHHHHHH-HHHcCCEEEEecCCcCCC--------------CCHHHHHHHhhcc--CCCEEEE
Confidence 854 34568899999999875443 334454444333211111 1899999998742 4567777
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-ccccC-CCcchhhhhhhcc-CCccccccccc
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGR 265 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~~-~~~d~~~~sK~~~-~G~~~g~~~~~ 265 (411)
+++++++|.+.+ .+++.++|+++++++|+||+|+++ ....... .+.++ ..+++.|+||+++ +|+|+||++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 778888898888 889999999999999999999977 4322221 12334 4456779999998 79999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEE
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 344 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~ 344 (411)
+++++.+.... .+++.++++++++.++++..+. ++.+++++++.+++.+.|++. ++.. .+..|.+++++
T Consensus 247 ~~~~~~l~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~ 316 (369)
T 3cq5_A 247 PAFIDAVMLVR-----LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----GYAV-VPSESNFVFFG 316 (369)
T ss_dssp THHHHHHHTTS-----CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----TCEE-ECCSSSEEEEE
T ss_pred HHHHHHHHHcC-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCEE-CCCCCeEEEEE
Confidence 99988887422 2456889999998888875332 667778888888888888764 3322 34567888887
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+.. +..++.+.|.++||.+.+++ .+.+|+++. +++++++++++|+++++
T Consensus 317 ~~~---------------~~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DFS---------------DQHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CCS---------------SHHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CCC---------------CHHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 630 12578888999999999873 346888876 89999999999998875
No 84
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=1.1e-29 Score=236.31 Aligned_cols=324 Identities=15% Similarity=0.072 Sum_probs=214.9
Q ss_pred EeecCcEEEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCh
Q 015230 23 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSG 101 (411)
Q Consensus 23 ~~~~g~~~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g 101 (411)
..++|.++++.+|+.++||.++. ++++ .+|++++++.+.+.....| +.....++.+++++.++ .++++++|+|+
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~g~ 76 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRHY--PEPDAGTLRQMLAKRNSVDNNAILVTNGP 76 (350)
T ss_dssp --------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHTTCCGGGEEEESHH
T ss_pred cccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCH
Confidence 46788999999999999999985 4555 7899999999988553333 32223678888888887 67899999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCC-CCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
++|+..+++.+ . ++.|++..++|++... .....|..+..++. ....++ ++
T Consensus 77 ~~al~~~~~~l---~-gd~Vi~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~~--------------~~---------- 127 (350)
T 3fkd_A 77 TAAFYQIAQAF---R-GSRSLIAIPSFAEYED-ACRMYEHEVCFYPSNEDIGEA--------------DF---------- 127 (350)
T ss_dssp HHHHHHHHHHT---T-TCEEEEEESCCHHHHH-HHHHTTCEEEEEETTSCGGGS--------------CC----------
T ss_pred HHHHHHHHHHH---C-CCEEEEeCCCcHHHHH-HHHHcCCeEEEEecCCccccC--------------cc----------
Confidence 99999999853 3 7899999999986443 33333443333222 111111 11
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC-CEEEEecccccc-ccccCc--cccccCCCcchhhhhhhcc-C
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGF-RLAYGG--AQEYFGVTPDLTTLGKIIG-G 255 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~-~~li~De~~~g~-~~g~~~--~~~~~~~~~d~~~~sK~~~-~ 255 (411)
+++++++++.++|++|.+.+ .+++.++++.++ .+||+||+|+++ ..+... ..+..+....+.|+||.++ +
T Consensus 128 -~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 202 (350)
T 3fkd_A 128 -SNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP 202 (350)
T ss_dssp -TTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG
T ss_pred -CCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCc
Confidence 24566666666777888877 555666666554 599999999977 544321 2222233344668999999 7
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
|+|+||+++++++++.+.... .+++.++++++++.++++.... +++.+ ..++.+++.+.|+++ +....
T Consensus 203 G~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~~----~~~~~ 272 (350)
T 3fkd_A 203 GLRIGYIVANKDFMKRVAAFS-----TPWAVNALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNRL----DGVEV 272 (350)
T ss_dssp GGCCEEEECCHHHHHHHHTTC-----CTTCSCHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHHS----TTEEE
T ss_pred chheEeEEeCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhcC----CCcEE
Confidence 999999999999999887532 3567889999999888875542 34333 337777777777654 33333
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHHHHHHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~l~~ 406 (411)
..+.|.++++.+... +..++.+.|.+ +||.+.++. .+.+|+++. +.+++++++++|++
T Consensus 273 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 273 HPSGTTFFLLRLKKG--------------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALET 337 (350)
T ss_dssp CCCSSSEEEEEESSS--------------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCC--------------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 445677888877421 23688899998 899999874 345888866 78889999999998
Q ss_pred HHHh
Q 015230 407 VLRQ 410 (411)
Q Consensus 407 ~~~~ 410 (411)
++++
T Consensus 338 ~~~~ 341 (350)
T 3fkd_A 338 FLEK 341 (350)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8653
No 85
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.97 E-value=1.9e-30 Score=245.55 Aligned_cols=331 Identities=14% Similarity=0.119 Sum_probs=223.5
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC----CCCC---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~----~~~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~ 106 (411)
++.++||.++.. ++.++.++++.+++.++++.. ..|. +..++++.+++++ + .+++|++|+|+++|+.
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~~~~~v~~~~g~~~al~ 105 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI----GVRPEEVLITTGSQQALD 105 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH----TSCGGGEEEESHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh----CCChhhEEEeccHHHHHH
Confidence 456899988754 445678999999999988752 2232 2234445555544 4 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
.+++.+ ..+++.|++..++|++....+ ...|..+..++... .+ .|++++++.+++. ++++
T Consensus 106 ~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~-~~--------------~d~~~l~~~l~~~--~~~~ 165 (397)
T 2zyj_A 106 LVGKVF--LDEGSPVLLEAPSYMGAIQAF-RLQGPRFLTVPAGE-EG--------------PDLDALEEVLKRE--RPRF 165 (397)
T ss_dssp HHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCEEEEEEEET-TE--------------ECHHHHHHHHHHC--CCSC
T ss_pred HHHHHh--CCCCCEEEEeCCCcHHHHHHH-HHcCCEEEecCcCC-CC--------------CCHHHHHHHHhhc--CCeE
Confidence 999853 345678999999999754433 23343333322110 01 1899999999852 4556
Q ss_pred EE-EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc------CCCcchhhhhhhccCCc
Q 015230 187 II-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF------GVTPDLTTLGKIIGGGL 257 (411)
Q Consensus 187 vi-~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~------~~~~d~~~~sK~~~~G~ 257 (411)
|+ +..+++++|.+. +.+++++|.++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||++++|+
T Consensus 166 v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~ 244 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLT-PLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL 244 (397)
T ss_dssp EEECCBSCTTTCCBC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred EEECCCCcCCCCCcC-CHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence 53 445566677665 4667999999999999999999999987 54432 222222 22234668999999889
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh--c-CChHHHHHHHHHHHHHHHHHHHHhcC-CceE
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGTYEYLNKITGELTQGIIDAGKKAG-HAIC 333 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 333 (411)
|+||+++++++++.+.. .....+++.++++++++.++++... . ++++++++++.+++.+.|++. .+ ....
T Consensus 245 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~ 318 (397)
T 2zyj_A 245 RVAFAVAHPEALQKLVQ---AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRY 318 (397)
T ss_dssp CCEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEE
T ss_pred eeEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEE
Confidence 99999999998887763 2223345668898888887775321 1 334455555666666666543 23 1222
Q ss_pred -EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------CcceeeecCC-CHHHHHHHHHH
Q 015230 334 -GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITA 403 (411)
Q Consensus 334 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------~~~~~~~~~~-t~~~i~~~i~~ 403 (411)
....|+++|+++... .+..++.+.|.++||.+.++. .+.+|+++.. +++++++++++
T Consensus 319 ~~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~ 385 (397)
T 2zyj_A 319 TRPKGGMFVWMELPKG-------------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRR 385 (397)
T ss_dssp CCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHH
T ss_pred ccCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHH
Confidence 234578888887421 123678999999999998863 2457886554 79999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 386 l~~~l~~ 392 (397)
T 2zyj_A 386 LGRALKG 392 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 86
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=2.4e-29 Score=239.10 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=230.7
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCC---CCCHHHHHHHHHHHhhCC---CC-CEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~---~~~~~~~~l~~~l~~~~~---~~-~~v~~~~~g~~a~ 105 (411)
+..++||..+. ..++ .+|.+++++.+++... ..|. +..++++.+++++.+.++ .+ ++|++|+|+++|+
T Consensus 22 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 35678988883 2222 7899999999998753 1232 235778889988887654 34 7999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
..+++.+ ..+++.|++..++|++... .....|..+..++.... .+... ......+ |++++++.++ .+
T Consensus 99 ~~~~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~g~~~--~~~~~~~---d~~~l~~~~~---~~ 167 (410)
T 3e2y_A 99 FNSIQGL--VDPGDEVIIMVPFYDCYEP-MVRMAGAVPVFIPLRSKPTDGMKW--TSSDWTF---DPRELESKFS---SK 167 (410)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEECCCCSSCC--BGGGEEC---CHHHHHTTCC---TT
T ss_pred HHHHHHh--cCCCCEEEEeCCCchhhHH-HHHHcCCEEEEEeccccccccccc--cccCCcC---CHHHHHhhcC---CC
Confidence 9999854 4466789999999986543 33444544433322110 01000 0000111 7888888775 36
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccC-cccccc----CCCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~-~~~~~~----~~~~d~~~~sK~~~-~G 256 (411)
+++|++++++|++|.+.+ .+.+++|+++|++||+++|+||+|+++ ..|.. .....+ +....+.|+||.++ +|
T Consensus 168 ~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G 246 (410)
T 3e2y_A 168 TKAIILNTPHNPLGKVYT-RQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG 246 (410)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG
T ss_pred ceEEEEeCCCCCCCcCcC-HHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC
Confidence 788888877778887664 455999999999999999999999988 55532 112122 22244668999999 79
Q ss_pred cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 257 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-----KEPGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 257 ~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
+|+||+++++++++.+.. .....+++.++++++++.++++.. ..++..++.++..+..++.+.+...+.++.
T Consensus 247 ~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 323 (410)
T 3e2y_A 247 WKLGWSIGPAHLIKHLQT---VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLK 323 (410)
T ss_dssp GCCEEEECCHHHHHHHHH---HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred ceEEEEEECHHHHHHHHH---HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 999999999999888762 234457888999999998888741 113334444444444444444433334554
Q ss_pred eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH-HHHcCeEeccCCC-----------cceeeecCCCHHHHHH
Q 015230 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG-MLEEGVYFAPSQF-----------EAGFTSLAHSSDDIQH 399 (411)
Q Consensus 332 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~~~-----------~~~~~~~~~t~~~i~~ 399 (411)
......|+++|+++....... .. .........++.+. +.++||.+.++.. +.+|++++.+++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~ 401 (410)
T 3e2y_A 324 PIVPDGGYFIIADVSSLGADL-SD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDA 401 (410)
T ss_dssp EEBCSBSSEEEEECGGGCCCC-TT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHH
T ss_pred ecCCCccEEEEEEchhhhccc-cc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHH
Confidence 444566888898885422100 00 00001112355554 4577999988642 3489999999999999
Q ss_pred HHHHHHH
Q 015230 400 TITAAEK 406 (411)
Q Consensus 400 ~i~~l~~ 406 (411)
++++|++
T Consensus 402 ~l~~l~~ 408 (410)
T 3e2y_A 402 AEEIFRA 408 (410)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999975
No 87
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=2.4e-30 Score=245.66 Aligned_cols=340 Identities=14% Similarity=0.052 Sum_probs=231.9
Q ss_pred cCCCEEEeccCCcccc-ccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHH
Q 015230 33 IDGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 104 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~-~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a 104 (411)
.+|+.++||..+.... +++ .++++++++.+.++... .|+ +..++++.+++++.+.++ .++++++|+||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4678899999885311 334 67899999999987643 232 235778888888877653 56899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+..+++.+ ..+++.|++.+++|++....+ ...|..+..++.....++ . -|++++++.++. ++
T Consensus 114 l~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~---~~ 175 (406)
T 1xi9_A 114 LQLIFGAL--LDPGDEILVPGPSYPPYTGLV-KFYGGKPVEYRTIEEEDW---------Q---PDIDDIRKKITD---RT 175 (406)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEEEEGGGTS---------E---ECHHHHHHHCCT---TE
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCccHHHHH-HHcCCEEEEeecCCCcCC---------c---CCHHHHHHhhCc---Cc
Confidence 99999864 345688999999998754433 333443333221100111 0 188999988863 57
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCc-ch--hhhhhhcc-CCccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DL--TTLGKIIG-GGLPV 259 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~-d~--~~~sK~~~-~G~~~ 259 (411)
++|++++++|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..+.......++... ++ .|+||+++ +|+|+
T Consensus 176 ~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 254 (406)
T 1xi9_A 176 KAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRL 254 (406)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCC
T ss_pred eEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEE
Confidence 7777777777788765 4566999999999999999999999987 533222222222111 33 48999998 79999
Q ss_pred cccc--ccH----HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015230 260 GAYG--GRR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHA 331 (411)
Q Consensus 260 g~~~--~~~----~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (411)
||++ +++ ++++.+... .... ++.++++++++.++++...+ ++++++++++.+++.+.|+++ +..
T Consensus 255 G~~~~~~~~~~~~~l~~~l~~~---~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~ 326 (406)
T 1xi9_A 255 GYMYFVDPENKLSEVREAIDRL---ARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI----PGI 326 (406)
T ss_dssp EEEEEECTTCTTHHHHHHHHHH---HHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS----TTE
T ss_pred EEEEEecCchhHHHHHHHHHHH---HHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Confidence 9998 888 888877631 1222 66788888888888863221 445566666666666666553 222
Q ss_pred eEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCC------CcceeeecCCCHHHHHHHHHH
Q 015230 332 ICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 403 (411)
Q Consensus 332 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~~~~~~~~t~~~i~~~i~~ 403 (411)
... ...|+++|+.+.... ..+..++.+.|. ++||.+.++. .+.+|+++.++++++++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~~ 395 (406)
T 1xi9_A 327 STTKPQGAFYIFPKIEVGP-----------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDR 395 (406)
T ss_dssp ECCCCCBSSEECCEECSCS-----------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHH
T ss_pred eeecCCeeEEEEEecCccC-----------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 211 233666776763210 011367888886 8899998873 346899878999999999999
Q ss_pred HHHHHHhC
Q 015230 404 AEKVLRQI 411 (411)
Q Consensus 404 l~~~~~~~ 411 (411)
|.++++++
T Consensus 396 l~~~l~~~ 403 (406)
T 1xi9_A 396 FEKFMKER 403 (406)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998763
No 88
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=2.8e-29 Score=239.98 Aligned_cols=340 Identities=13% Similarity=0.057 Sum_probs=228.8
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHH------------HcCCCC---CCCCHHHHHHHHHHHhhCC-----CCCEE
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETM------------KKGTSF---GAPCLLENVLAEMVISAVP-----SIEMV 95 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l------------~~~~~~---~~~~~~~~~l~~~l~~~~~-----~~~~v 95 (411)
+.++||.++. ++++ ++.+.+++.++. .....| .+..++++.+++++.+.++ .++++
T Consensus 36 ~~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 36 NGVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp TSBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred Cceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 3678998764 5555 567887776432 111122 2346788888988887653 36899
Q ss_pred EEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH
Q 015230 96 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN 175 (411)
Q Consensus 96 ~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 175 (411)
++++|++++++.+++.+ ..+++.|++..++|++.........|..+..++.....++. .|++++++
T Consensus 112 ~~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~ 177 (428)
T 1iay_A 112 VMAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFK------------ITSKAVKE 177 (428)
T ss_dssp EEEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTC------------CCHHHHHH
T ss_pred EEccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCc------------CCHHHHHH
Confidence 99999999999999854 34567899999999875443333445444443322111111 18999998
Q ss_pred HHHc---CCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCc-ccccc-------CCC
Q 015230 176 LFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-------GVT 243 (411)
Q Consensus 176 ~~~~---~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~-~~~~~-------~~~ 243 (411)
.+++ ...++++|+++..+|++|.+. +.+++++|.++|++||++||+||+|+++ ..+..+ ....+ +..
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCC
Confidence 8874 223577666655566677665 5677999999999999999999999986 443221 11111 122
Q ss_pred cc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh---c--CChHHHHHH
Q 015230 244 PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNK 312 (411)
Q Consensus 244 ~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~---~--~~~~~~~~~ 312 (411)
+| +.|+||+++ +|+|+||+++ ++++++.+.. ...+++.++++++++.++++... . +++++++++
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 331 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGK 331 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 55 569999998 7999999987 6788877752 12246678899988887775321 1 455666777
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------Ccc
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 385 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~ 385 (411)
+.+++.+.|+++ ++.......|+++|+++...... +......++.+.|.++ ||++.++. .+.
T Consensus 332 ~~~~l~~~L~~~----g~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 332 RHKHFTNGLEVV----GIKCLKNNAGLFCWMDLRPLLRE-------STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHHT----TCCBCCCSSSSEEEEECGGGCSS-------SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHHhc----CCcccCCCeeEEEEEechhhcCC-------CchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 777777777665 32222223578889988532100 1123446788999887 99999864 235
Q ss_pred eeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 386 GFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 386 ~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++. .+++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788766 8999999999999998875
No 89
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=6.6e-30 Score=238.67 Aligned_cols=321 Identities=15% Similarity=0.110 Sum_probs=223.2
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~--~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al 109 (411)
.+|+.++||.++. ++++ .+|++++++.++++.. ..+.|+.....++.+++++.++ .++++++|+||++|+..++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 5678899999984 3333 7899999999998873 0122332233566666666665 5789999999999999999
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 189 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~ 189 (411)
+.. ..+++.|++..++|++.... ....|..+..++.. ... +++++ .+.. +++++++
T Consensus 100 ~~l--~~~gd~Vl~~~p~~~~~~~~-~~~~g~~~~~v~~~--~~~--------------~~~~l---~~~~--~~~~v~i 155 (360)
T 3hdo_A 100 RAF--AAEGEEIGYVHPSYSYYGTL-AEVQGARVRTFGLT--GDF--------------RIAGF---PERY--EGKVFFL 155 (360)
T ss_dssp HHH--CCTTCEEEEESSSCTHHHHH-HHHHTCEEEEECBC--TTS--------------SBTTC---CSSB--CSSEEEE
T ss_pred HHH--hCCCCEEEEcCCChHHHHHH-HHHCCCEEEEeeCC--CCC--------------CHHHH---Hhhc--CCCEEEE
Confidence 853 34568899999999875433 33444444333221 111 11111 1111 1236666
Q ss_pred cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHH
Q 015230 190 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 190 ~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
+.++|++|.+.+ +++|.++|+++|+++|+||+|++| ..+.....+..+....+.|+||.++ +|+|+||++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 666777888888 899999999999999999999987 3332222233344455679999998 7999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEe
Q 015230 268 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346 (411)
Q Consensus 268 ~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 346 (411)
+++.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|+++ ++. ...+.|.++++.+.
T Consensus 232 ~~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 232 VIAALDKI-----RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----GYD-VIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHHH-----SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEEECT
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCE-EcCCCccEEEEECC
Confidence 98888632 23577899999999988874222 455666777777777776654 332 23456788887653
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
.. +..++.+.|.++||.+.++.. +.+|+++. +++++++++++|+++.+
T Consensus 302 ~~--------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 DR--------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TC--------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 21 236788999999999998753 56899876 89999999999998754
No 90
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=1.1e-29 Score=237.57 Aligned_cols=323 Identities=13% Similarity=0.094 Sum_probs=225.4
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.+.++||.++. ++++ .+|++++++.+.++....|. .....++.+.+++.++ ..+++++|+|+++|+..+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~--~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l- 102 (365)
T 3get_A 29 VKEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLYP--DDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK- 102 (365)
T ss_dssp CSCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSCC--CTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCC--CCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-
Confidence 36789999885 4555 78999999999988644433 2222566666666666 6789999999999999999853
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..+++.|++..++|++... .....|..+..++.....+ . |++++++.++ +++++|+++.++
T Consensus 103 -~~~gd~vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~-~-------------d~~~l~~~l~---~~~~~v~~~~p~ 163 (365)
T 3get_A 103 -LNSKNAFLQAGVTFAMYEI-YAKQCGAKCYKTQSITHNL-D-------------EFKKLYETHK---DEIKLIFLCLPN 163 (365)
T ss_dssp -CCTTCEEEECSSCCTHHHH-HHHHHTCEEEECSSSSCCH-H-------------HHHHHHHHTT---TTEEEEEEESSC
T ss_pred -hCCCCEEEEeCCChHHHHH-HHHHcCCEEEEEecCCCCC-C-------------CHHHHHHHhC---CCCCEEEEcCCC
Confidence 3466889998888885433 3334455444433210111 1 7888888886 467787777667
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--ccc--Cccc---cccCCCcchhhhhhhcc-CCcccccccc
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY--GGAQ---EYFGVTPDLTTLGKIIG-GGLPVGAYGG 264 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~--~~~~---~~~~~~~d~~~~sK~~~-~G~~~g~~~~ 264 (411)
|++|.+.+ .+.+++|+++| ++|+++|+||+|+++ . .+. .... +..+....+.|+||.++ +|+|+||+++
T Consensus 164 nptG~~~~-~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 241 (365)
T 3get_A 164 NPLGECLD-ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA 241 (365)
T ss_dssp TTTCCCCC-HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE
T ss_pred CCCCCCcC-HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc
Confidence 77787776 33366666666 679999999999876 3 331 1111 12233344568999998 7999999999
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++++.+... ..+++.++++++++.++++.... ++.+++++++.+++.+.|+++ ++. ...+.|.++++
T Consensus 242 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~-~~~~~~~~~~~ 311 (365)
T 3get_A 242 NANIISAFYKL-----RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH----NIK-IIDSYTNFITY 311 (365)
T ss_dssp CHHHHHHHHHH-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEE
T ss_pred CHHHHHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEE
Confidence 99998887632 22466889999998888763221 455566666666666666654 332 23456788888
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
++... +..++.+.|.++||.+.++. .+.+|+++. +++++++++++|+++++
T Consensus 312 ~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 312 FFDEK--------------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp ECSSS--------------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred ECCCC--------------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 77431 23688999999999999986 456899876 89999999999998763
No 91
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=1.6e-29 Score=242.20 Aligned_cols=348 Identities=11% Similarity=0.060 Sum_probs=225.8
Q ss_pred EEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC-------------CCC---CCCCHHHHHHHHHHHhhCC---
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-------------TSF---GAPCLLENVLAEMVISAVP--- 90 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~-------------~~~---~~~~~~~~~l~~~l~~~~~--- 90 (411)
.||.+++...++..+...+++. ++.+.+++.+..... ..| .+..++++.+++++.+..+
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 3667776544444444334444 778888777654421 112 2335778888888875542
Q ss_pred --CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCC
Q 015230 91 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 168 (411)
Q Consensus 91 --~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (411)
..+++++|+||++|++.+++.+ ..+++.|++..++|++.........|..+..++.....++. -
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~ 173 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQ------------I 173 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSC------------C
T ss_pred CCCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCc------------C
Confidence 4789999999999999999853 34567899999998865443332344433333222111110 1
Q ss_pred CHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcc-cccc---
Q 015230 169 DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYF--- 240 (411)
Q Consensus 169 d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~-~~~~--- 240 (411)
|++++++.+++. ..++++|++++++|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+..+. ....
T Consensus 174 d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 252 (435)
T 3piu_A 174 TETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT-RNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKD 252 (435)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccc
Confidence 899999998751 236777777766777777655 555999999999999999999999986 4443221 1111
Q ss_pred -CCC-----cc----hhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-----
Q 015230 241 -GVT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----- 303 (411)
Q Consensus 241 -~~~-----~d----~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~----- 303 (411)
+.+ +| +.|+||+++ +|+|+||+++ ++.+.+.+.. ...++..++++++++.++++....
T Consensus 253 ~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (435)
T 3piu_A 253 RNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQHLLSAMLSDKKLTKNYI 327 (435)
T ss_dssp -------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred cccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCCCHHHHHHHHHHhcChHHHHHHH
Confidence 111 33 568999998 8999999988 5667666652 223455678888887777653221
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ 382 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~ 382 (411)
++.+++++++.+++.+.|++. ++.......|+++|+++...... +......++.+.|.++ ||++.++.
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~l~~~~~~-------~~~~~~~~~~~~l~~~~gi~v~~g~ 396 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQKS----GISCLNGNAGLFCWVDMRHLLRS-------NTFEAEMELWKKIVYEVHLNISPGS 396 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----TCEECCCCSSSEEEEECGGGSSS-------SSHHHHHHHHHHHHHTSCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEEccccccc-------CCchhHHHHHHHHHHHCCEEEeCCc
Confidence 334455555556666655543 43332334468999988542110 1122346788888777 99998853
Q ss_pred ------CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 383 ------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ------~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
...+|+++.. |++++++++++|++++++
T Consensus 397 ~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 397 SCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp GGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 2457887665 999999999999999875
No 92
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=1.2e-30 Score=249.71 Aligned_cols=343 Identities=13% Similarity=0.074 Sum_probs=228.4
Q ss_pred CEEEeccCCccccccCCCcHHH--HHHHHHHHHc--CCCCC---CCCHHHHHHHHHHHhhC-C-CCCE---EEEeCChHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQV--LAALGETMKK--GTSFG---APCLLENVLAEMVISAV-P-SIEM---VRFVNSGTE 103 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v--~~a~~~~l~~--~~~~~---~~~~~~~~l~~~l~~~~-~-~~~~---v~~~~~g~~ 103 (411)
+.++||.++... +++. +|.+ ++++.++++. ...|. +..++++.+++++.+.. + .+++ +++|+|+++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999998521 4664 5656 7777666643 12232 23566777777776554 3 5678 999999999
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 104 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 104 a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
|++.+++.+ ..+++.|++.+++|++....+....|..+..++....... .|++++++.++..+.+
T Consensus 125 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 125 GLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGH-------------YTTDSLVEALQSYNKD 189 (430)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTSC-------------BCSHHHHHHHHHCCSS
T ss_pred HHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccCC-------------cCHHHHHHHHHhcCCC
Confidence 999999853 3456889999999997544332213443333332211100 1789999999864445
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-----hCCEEEEecccccc-ccccC-cc-c-cccCCCcc------hhh
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYG-GA-Q-EYFGVTPD------LTT 248 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-----~~~~li~De~~~g~-~~g~~-~~-~-~~~~~~~d------~~~ 248 (411)
++++++..++|++|.+ .+.+++++|.++|++ ||+++|+||+|+++ ..+.. .. . ...+..++ +.|
T Consensus 190 ~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 6665555446667765 456679999999999 99999999999988 54431 11 1 22122222 568
Q ss_pred hhhhcc-CCcccccccc---cHHHHHHhcCCCCc-ccccCCCCCHHHHHHHHHHHH-HH---hc-CChHHHHHHHHHHHH
Q 015230 249 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPM-YQAGTLSGNPLAMTAGIHTLK-RL---KE-PGTYEYLNKITGELT 318 (411)
Q Consensus 249 ~sK~~~-~G~~~g~~~~---~~~~~~~~~~~~~~-~~~~t~~~~~~~~a~~~~~l~-~~---~~-~~~~~~~~~~~~~~~ 318 (411)
+||.++ +|+|+||+++ ++++++.+...... ....+++.++++++++.++++ .. +. ++.+++++++.+++.
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 348 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTK 348 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 7999999998 99888877631100 011467889999999988887 32 21 235556666666666
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCCCcceeeecC-CCHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-HSSDD 396 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~-~t~~~ 396 (411)
+.|++.....++.......|+++|+++.. .+..++.+.|.+ +||.+.++..+.+|+++. .++++
T Consensus 349 ~~L~~~~~~~g~~~~~~~~g~~~~~~~~~--------------~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~ 414 (430)
T 2x5f_A 349 EVVYADQYHSHWQAYDFNSGYFMAIKVHD--------------VDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDD 414 (430)
T ss_dssp HHHTCGGGTTTEEECCCCBSSEEEEEESS--------------SCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGG
T ss_pred HHHHhhCCCCCceeeCCCceEEEEeCCCC--------------CCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHH
Confidence 66652211223222223346678988841 112578888887 899999986667899766 79999
Q ss_pred HHHHHHHHHHHHHh
Q 015230 397 IQHTITAAEKVLRQ 410 (411)
Q Consensus 397 i~~~i~~l~~~~~~ 410 (411)
+++++++|++++++
T Consensus 415 i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 415 IPHVFDSIAKAIDD 428 (430)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 93
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=5.3e-30 Score=246.52 Aligned_cols=339 Identities=12% Similarity=0.097 Sum_probs=221.0
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHc-----CC-CCC---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GT-SFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGT 102 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-----~~-~~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 102 (411)
.+|+.++||.++. ..+. .+|.+++++.++++. .. .|+ +..++++++++++..-.+ .++++++|+|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 3578899999883 2222 789999999999984 11 221 124556666666651112 578999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+++..+ .. ...+++.|++.+++|++....+...+..+.... . ....+..++.++.+.+...+.+. .
T Consensus 143 ~al~~~-~~--l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (449)
T 3qgu_A 143 CDIARI-QM--MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG-----T-----GFDGIEYMVCNPDNHFFPDLSKA-K 208 (449)
T ss_dssp HHHHHH-HH--HHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCS-----S-----SBTTEEEEECCGGGTTCCCGGGC-C
T ss_pred HHHHHH-HH--HhCCCCEEEEcCCCChhHHHHHHHcCCcccccc-----c-----ccceeEEEecccccCCcCChhHc-C
Confidence 999988 32 235678899999999976655444333211000 0 00112223322111111111111 2
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-Ccccccc----CCCcchhhhhhhcc-C
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-G 255 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~----~~~~d~~~~sK~~~-~ 255 (411)
++++|+++..+|++|.+. +.+.+++|+++|++||+++|+||+|++| ..+. ......+ +..+.+.|+||+++ +
T Consensus 209 ~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 455666666666677655 4556999999999999999999999988 5442 1122222 23345679999999 8
Q ss_pred CcccccccccHHHHH--------HhcCCCCcccccCCCCCHHHHHHHHHHHHHH--hc-CChHHHHHHHHHHHHHHHHHH
Q 015230 256 GLPVGAYGGRRDIME--------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE-PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 256 G~~~g~~~~~~~~~~--------~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~--~~-~~~~~~~~~~~~~~~~~l~~~ 324 (411)
|+|+||+++++++++ .+. ......+.+.++++++++.++++.. .. ++++++++++.+++++.|+++
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999998877654 222 1112335578899999988887642 11 566777888888888887765
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 397 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~i 397 (411)
++.......|+++|+.+.. .+..++.+.|.++ ||++.|+. ...+|+++..+++++
T Consensus 365 ----g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i 426 (449)
T 3qgu_A 365 ----GFSVYGGDDAPYIWVGFPG--------------KPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENI 426 (449)
T ss_dssp ----TCCEEESSSSSEEEEECTT--------------SCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ----CCeeeCCCCeeEEEEECCC--------------CCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHH
Confidence 4443334458888988741 1125777777776 99998863 245899888899999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 94
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=8.9e-30 Score=241.92 Aligned_cols=330 Identities=15% Similarity=0.087 Sum_probs=229.0
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 105 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~ 105 (411)
.+|+.++||.++. .+++ .++.+++++ ++++... .|. +..++++.+++++.+.++ .++++++|+||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3678999999884 2334 678899999 8887632 232 235778888888887654 468999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCC-HHHHHHHHHcCCCcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~~~ 184 (411)
..+++.+ ..+++.|++..++|++.... ....|..+..++.....++ + ++++++.++ +++
T Consensus 116 ~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~---~~~ 175 (409)
T 2gb3_A 116 LFSFAVI--ANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF--------------AIPQNLESFIN---ERT 175 (409)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS--------------CCCTTGGGGCC---TTE
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeccCCCCCC--------------ccHHHHHHhhC---cCC
Confidence 9999864 34568899999999875443 3344544333322110111 1 345555554 357
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccch--hhhhhhcc-CCccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDL--TTLGKIIG-GGLPV 259 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~--~~~sK~~~-~G~~~ 259 (411)
++|+++++++++|.+. +.+.+++|.++|++||++||+||+|+++ ..+..... ..+. ..|+ .|+||+++ +|+|+
T Consensus 176 ~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~ 253 (409)
T 2gb3_A 176 KGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARV 253 (409)
T ss_dssp EEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceE
Confidence 7777777777778765 4566999999999999999999999977 54432221 1122 2354 48999998 79999
Q ss_pred ccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEe
Q 015230 260 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 335 (411)
Q Consensus 260 g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 335 (411)
||+++++ ++++.+.. .....+ +.++++++++.++++.... ++++++++++.+++.+.|+++ ++.. ...
T Consensus 254 G~~~~~~~~l~~~l~~---~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 325 (409)
T 2gb3_A 254 GCLITRNEELISHAMK---LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKP 325 (409)
T ss_dssp EEEECSCHHHHHHHHH---HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCC
T ss_pred EEEEECcHHHHHHHHH---HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc----CceeeeCC
Confidence 9999887 88887763 112223 7788888888888753211 455666777777777777765 3222 223
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc------CeEeccCC---------CcceeeecCCCHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~~~---------~~~~~~~~~~t~~~i~~~ 400 (411)
..|+++++++.. .+..++.+.|.++ ||.+.++. .+.+|+++.+++++++++
T Consensus 326 ~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~ 391 (409)
T 2gb3_A 326 SGAFYITAELPV--------------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRA 391 (409)
T ss_dssp SBSSEEEEECSS--------------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHH
T ss_pred CeeEEEEEEeCC--------------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHH
Confidence 447777877731 1126788888887 99998752 345889877999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 392 ~~~l~~~l~~ 401 (409)
T 2gb3_A 392 IDVLMEGLKM 401 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 95
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=2.3e-29 Score=236.30 Aligned_cols=313 Identities=15% Similarity=0.135 Sum_probs=215.2
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh
Q 015230 59 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 59 ~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 136 (411)
+++.+++.......++..-..++.+.+++.+. +++++++|+||++|+..+++.+ ..+++.|++..++|++.... .
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHH-H
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHH-H
Confidence 45666666643222222223566666666652 6789999999999999999853 45678899999999875433 3
Q ss_pred hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh
Q 015230 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216 (411)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~ 216 (411)
...|..+..++.....++. -|+++++++++ +++++|+++++++++|... +.+++++|.++|++|
T Consensus 123 ~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~ 186 (375)
T 3op7_A 123 KSLGAEVDLWQIEEENGWL------------PDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEV 186 (375)
T ss_dssp HHTTCEEEEEEEEGGGTTE------------ECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTT
T ss_pred HHcCCEEEEEeccccCCCC------------CCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHc
Confidence 3334433332221111110 08999998886 3577788888788888766 466699999999999
Q ss_pred CCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHH
Q 015230 217 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 294 (411)
Q Consensus 217 ~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~ 294 (411)
|+++|+||+|+++ ..+.....+..+..+++.|+||+++ +|+|+||+++++++++.+... ....+++.++++++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 263 (375)
T 3op7_A 187 GAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDY---RDYTMICAGVFDDLVA 263 (375)
T ss_dssp TCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTT---GGGTTSCCCHHHHHHH
T ss_pred CCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHH---HhhhccCCCcHHHHHH
Confidence 9999999999987 4433333445566677889999998 799999999999999998743 2444677789999888
Q ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 295 IHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 295 ~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
.++++..+. ++.++.++++.+++.+.|++ .+...... ..|.+.++.+... .+..++.+.+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l 326 (375)
T 3op7_A 264 QLALAHYQEILERNRHILEENLAILDQWIEE----EPLVSYIRPAVVSTSFVKIAVD-------------MPMEDFCLQL 326 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEECCCSSSSCEEEEECCS-------------SCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhh----CCCceEecCCCeEEEeEEcCCC-------------CCHHHHHHHH
Confidence 888774332 33344445555555555544 34333333 3456677776421 1125666666
Q ss_pred -HHcCeEeccCC----CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 372 -LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 372 -~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.++||.+.++. .+.+|+++..+.+++++++++|.+++++
T Consensus 327 l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 327 LQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred HHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 68899999875 3568999888889999999999999875
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=1.1e-28 Score=233.77 Aligned_cols=328 Identities=19% Similarity=0.144 Sum_probs=228.1
Q ss_pred CCCEEEeccCCccccccCC-CcHHHHHHHHHHHHcC-CC-----CC-CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TS-----FG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 105 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~-~~-----~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~ 105 (411)
+|++++||.++ +++|+ .+|++++++.+++++. .. .. ...+...++.+.+++.++..+.+++ ++|++++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~-~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVF-SSAYNAN 119 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEE-SCHHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEE-CCcHHHH
Confidence 67899999987 66666 5789999999999872 11 11 2346778899999998875566666 5567788
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcE
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~ 184 (411)
..++.++....+++.|++..+.|++... .+...|. .+..++++|++++++.+++.. +++
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~-~~~~~g~-------------------~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIE-GIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHH-HHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHH-HHHHcCC-------------------eEEEEcCCCHHHHHHHHHhhccCCc
Confidence 8887754222345677777666654332 2222222 355566668999999998643 367
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccccCC----CcchhhhhhhccCCc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV----TPDLTTLGKIIGGGL 257 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~~~~----~~d~~~~sK~~~~G~ 257 (411)
++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ |+ ..|..+. ...++ .+.+.|+||+++.
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~-- 252 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV-- 252 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS--
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC--
Confidence 89999999999999988 9999999999999999999998 43 3343222 33333 3335599999984
Q ss_pred ccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 258 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+.||+++++++++.+......+.. +.+.++++++++.++++.+.. ++++++++++.+++.+.|+++ .+...
T Consensus 253 ~GG~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--- 326 (401)
T 2bwn_A 253 FGGYIAASARMVDAVRSYAPGFIF-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII--- 326 (401)
T ss_dssp CCEEEEECHHHHHHHHHHCHHHHT-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC---
T ss_pred CCCEEecCHHHHHHHHHhCcCcee-cCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc---
Confidence 228888888888776532222222 223456888888888887765 467788889999999998876 22221
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHH-HcCeEeccCCC-------cceeeec--CCCHHHHHHHHHHH
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSL--AHSSDDIQHTITAA 404 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~-------~~~~~~~--~~t~~~i~~~i~~l 404 (411)
...|.++++.+. ...+..++.+.|. ++||.+.++.. ..+|+++ .+|++++++++++|
T Consensus 327 ~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l 393 (401)
T 2bwn_A 327 DHGSHIVPVVIG-------------DPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAM 393 (401)
T ss_dssp CCSSSCEEEECC-------------CHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEeC-------------ChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 233567888763 2234567888886 78999987532 3578754 47999999999999
Q ss_pred HHHHHhC
Q 015230 405 EKVLRQI 411 (411)
Q Consensus 405 ~~~~~~~ 411 (411)
+++++++
T Consensus 394 ~~~~~~~ 400 (401)
T 2bwn_A 394 DLLWARC 400 (401)
T ss_dssp HHHC---
T ss_pred HHHHHhc
Confidence 9987653
No 97
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=8.3e-30 Score=241.11 Aligned_cols=337 Identities=16% Similarity=0.082 Sum_probs=215.4
Q ss_pred CCCEEEeccCCccccccC--CCcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhCC---CCCEEEE--eCCh
Q 015230 34 DGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF--VNSG 101 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g--~~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~---~~~~v~~--~~~g 101 (411)
.++.++||.++...++.+ +.+|.+++++.+.++......| ..++++.+++++..... .+++|++ |+||
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~ 103 (396)
T 2q7w_A 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGG 103 (396)
T ss_dssp ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred CCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccc
Confidence 456789999996444544 4679999999888765322222 35566677776644322 3688988 9999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
++|++.+++++..+.+++.|++..++|++....+ ...|..+..++.....+.. .|++++++.+++.+
T Consensus 104 ~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~ 170 (396)
T 2q7w_A 104 TGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVF-NSAGLEVREYAYYDAENHT------------LDFDALINSLNEAQ 170 (396)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHH-HHTTCEEEEEECEETTTTE------------ECHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHH-HHcCCceEEEecccCCCCC------------cCHHHHHHHHHhCC
Confidence 9999999987655567789999999999754433 3334433332221001100 08999999997543
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccccccC----CCcchhhhhhhcc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFG----VTPDLTTLGKIIG 254 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~~----~~~d~~~~sK~~~ 254 (411)
.+++++++...+|++|.+ .+.+++++|.++|++||+++|+||+|+++ ..+ .......+. ...-+.|+||.++
T Consensus 171 ~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 249 (396)
T 2q7w_A 171 AGDVVLFHGCCHNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG 249 (396)
T ss_dssp TTCEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred CCCEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc
Confidence 345666666666666765 44566999999999999999999999987 432 221222111 1122558999999
Q ss_pred -CCcccccccc---cH----HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHH
Q 015230 255 -GGLPVGAYGG---RR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELT 318 (411)
Q Consensus 255 -~G~~~g~~~~---~~----~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~ 318 (411)
+|+|+||+++ ++ ++++.+.. .......+.++++++++.++++.. .+ ++++++++++.+++.
T Consensus 250 ~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 250 LYNERVGACTLVAADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp CGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_pred ccccccceEEEEcCCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999975 55 34444431 111223345888888888877532 11 455667777777777
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC-CHHHH
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDI 397 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~-t~~~i 397 (411)
+.|+++.....+.......|+++|+.+. ...+.+.+.++||++.++ +|+++.. |++++
T Consensus 327 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris~~~~~~e~i 385 (396)
T 2q7w_A 327 NTLQEKGANRDFSFIIKQNGMFSFSGLT-----------------KEQVLRLREEFGVYAVAS----GRVNVAGMTPDNM 385 (396)
T ss_dssp HHHHHTTCCSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTH
T ss_pred HHHHhcCCCCCcceecCCCceEEEecCC-----------------HHHHHHHHHhcCeeecCC----ceEEEeecCHHHH
Confidence 7777652100122222344666666441 145667778899999984 5776553 89999
Q ss_pred HHHHHHHHHHH
Q 015230 398 QHTITAAEKVL 408 (411)
Q Consensus 398 ~~~i~~l~~~~ 408 (411)
++++++|++++
T Consensus 386 ~~~~~~l~~~l 396 (396)
T 2q7w_A 386 APLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998763
No 98
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.96 E-value=1e-29 Score=242.41 Aligned_cols=338 Identities=12% Similarity=0.072 Sum_probs=226.2
Q ss_pred CCEEEeccCCccccccCCCc--HHHHHHHHHHHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCC--EEEEeCChH
Q 015230 35 GNEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP---SIE--MVRFVNSGT 102 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~--~~v~~a~~~~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~ 102 (411)
...++||..+...++.+..+ |.+++++.++++... .| .+..++++.+++++..... .++ ++++|+||+
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t 127 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT 127 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence 34679999986555666644 899999999988732 22 2335778888888876554 467 899999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC--CCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+|+..++++...+.+++.|++.+++|++... .....|..+..++.. ...++ |++++++.+++.
T Consensus 128 ~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~ 192 (420)
T 4f4e_A 128 GALKIGADFLRTLNPKAKVAISDPSWENHRA-LFDMAGFEVVAYPYYDAKTNGV--------------NFDGMLAALNGY 192 (420)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHH-HHHHTTCCEEEEECEETTTTEE--------------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH-HHHHcCCeEEEeeeeccccCcc--------------CHHHHHHHHHhC
Confidence 9999998755455677899999999987533 333445444443321 11111 899999999866
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc--Ccccc----ccCCCcchhhhhhhc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQE----YFGVTPDLTTLGKII 253 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~--~~~~~----~~~~~~d~~~~sK~~ 253 (411)
+.+++++++++.+|++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+. ..... ..+....+.|+||.+
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 55678888888777888665 4555999999999999999999999988 4321 11111 112223345899999
Q ss_pred c-CCcccccccc---cHHHHHHhcC-CCCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGG---RRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~~---~~~~~~~~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ .|+|+||+++ ++++++.+.. ........+.+.+.++++++.++++.. ++ ++++++++++.+++.+.
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVER 351 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 6999999842 5555543221 001111234445667777766655431 11 55667777778888887
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC-CHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~-t~~~i~~ 399 (411)
|+++....++.......|+++|+.+.. +.+.+.+.++||++.+++ |+++.. +++++++
T Consensus 352 L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~l~~~gI~v~~~~----Ris~~~~~~~~i~~ 410 (420)
T 4f4e_A 352 LKAAGIERDFSFINAQRGMFSYSGLTS-----------------AQVDRLREEFGIYAVSTG----RICVAALNTRNLDV 410 (420)
T ss_dssp HHHTTCSSCCTHHHHSCSSEEECCCCH-----------------HHHHHHHHHHCEECCTTS----EEEGGGCCTTTHHH
T ss_pred HHhcCCCCCceeECCCccEEEEeCCCH-----------------HHHHHHHHhCCEEecCCC----eEEEecCCHHHHHH
Confidence 776532112222234457777765521 456777888999999864 776554 8888999
Q ss_pred HHHHHHHHHH
Q 015230 400 TITAAEKVLR 409 (411)
Q Consensus 400 ~i~~l~~~~~ 409 (411)
++++|+++++
T Consensus 411 ~~~~l~~~l~ 420 (420)
T 4f4e_A 411 VANAIAAVLK 420 (420)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998863
No 99
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.96 E-value=8.9e-30 Score=242.22 Aligned_cols=339 Identities=12% Similarity=0.036 Sum_probs=222.5
Q ss_pred CCCEEEeccCCccccccCC--CcHHHHHHHHHHHHc--C-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEE--eCC
Q 015230 34 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKK--G-TSFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 100 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~--~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~--~~~ 100 (411)
+|+.++||..+...++.++ .+|.+.+++.+.++. . ..|. +..++++.+++++....+ .+++|++ |+|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 4677899999843333333 558999999888732 1 1221 235566677776654433 4689999 999
Q ss_pred hHHHHHHHHHHHHhccCC-----cEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 101 GTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
|++|++.+++++..+.++ +.|++..++|++.... ....|.. +..++.....+. . .|+++++
T Consensus 108 g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~---------~---~d~~~l~ 174 (412)
T 1ajs_A 108 GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV-FTTAGFKDIRSYRYWDTEKR---------G---LDLQGFL 174 (412)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH-HHHTTCSCEEEEECEETTTT---------E---ECHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHH-HHHcCCceeEEEeeecCCCC---------c---cCHHHHH
Confidence 999999998765445556 7899999999975433 3334443 433322100111 0 1899999
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc---cCccccccCCCcc----h
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----L 246 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g---~~~~~~~~~~~~d----~ 246 (411)
+.+++.+.+++++++...+|++|.+ .+.+++++|.++|++||++||+||+|.+| ..| .......+...+| +
T Consensus 175 ~~l~~~~~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 175 SDLENAPEFSIFVLHACAHNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHHSCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCcEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 9998643355666555555556654 45666999999999999999999999988 544 2222222211223 5
Q ss_pred hhhhhhccC-Ccccccccc---cHHH----HHHhcCCCCcccccCCC-CCHHHHHHHHHHHHHHh------c--CChHHH
Q 015230 247 TTLGKIIGG-GLPVGAYGG---RRDI----MEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK------E--PGTYEY 309 (411)
Q Consensus 247 ~~~sK~~~~-G~~~g~~~~---~~~~----~~~~~~~~~~~~~~t~~-~~~~~~a~~~~~l~~~~------~--~~~~~~ 309 (411)
.|+||.++. |+|+||+++ ++++ ++.+.. ....++. .++++++++.++++... . ++++++
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK----IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADR 329 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH----HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH----HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 689999996 999999988 7764 333331 1222444 58888888888887442 1 566777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 389 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~ 389 (411)
++++.+++.+.|+++.....+.......|+++|+.+. ...+.+.+.++||++.++ +|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris 388 (412)
T 1ajs_A 330 ILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS----GRIN 388 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT----SEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC----cEEE
Confidence 7888888888877652000122122334666665431 145566677889999974 5887
Q ss_pred cC-CCHHHHHHHHHHHHHHHHhC
Q 015230 390 LA-HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 390 ~~-~t~~~i~~~i~~l~~~~~~~ 411 (411)
+. .|++++++++++|+++++++
T Consensus 389 ~~~~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 389 MCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHC
T ss_pred eeeCCHHHHHHHHHHHHHHHHhc
Confidence 66 49999999999999998764
No 100
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=7.4e-29 Score=237.33 Aligned_cols=340 Identities=11% Similarity=0.097 Sum_probs=218.6
Q ss_pred cCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcC------CCCC---CCCHHHHHHHHHHHhhCC-CCCEEEEeCChH
Q 015230 33 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG------TSFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGT 102 (411)
Q Consensus 33 ~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~------~~~~---~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 102 (411)
.+|+.++||.++ .+.-..+|.+++++.++++.. ..|+ +..++++++++++.+.++ ..++|++|+|++
T Consensus 53 ~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIG---DTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSC---CCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCC---CCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 457789999998 555348999999999998852 1222 225667778877765445 678999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+++..+.. ...+++.|++.+++|++....+......+..... .. ....+..++.++.+.+...+++. .
T Consensus 130 ~al~~l~~---l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~l~~~-~ 197 (432)
T 3ei9_A 130 CDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-----VQ---KYGNIEYMRCTPENGFFPDLSTV-G 197 (432)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETT-----TT---EETTCEEEECCGGGTTSCCGGGC-C
T ss_pred HHHHHHHH---HcCCCCEEEEeCCCCHHHHHHHHHcCCccccccc-----cc---ccCceEEeccCcccCCcCChhhC-C
Confidence 99987433 2356788999999999765554443332211100 00 00011222221100000001212 2
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCcccccc----CCCcchhhhhhhcc-CC
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GG 256 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~----~~~~d~~~~sK~~~-~G 256 (411)
++++++++.++|++|.+.+ .+.+++|.++|++||++||+||+|+++ ..+.......+ +....+.|+||+++ +|
T Consensus 198 ~~~~v~l~~p~NPtG~~~~-~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAAT-REQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCCCCC-HHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 4455555555666666554 455999999999999999999999987 44322222111 22234668999999 89
Q ss_pred cccccccccHHH--------HHHhcCCCCcccccCCCCCHHHHHHHHHHHHH--Hhc-CChHHHHHHHHHHHHHHHHHHH
Q 015230 257 LPVGAYGGRRDI--------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR--LKE-PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 257 ~~~g~~~~~~~~--------~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~--~~~-~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+|+||+++++++ ++.+.. .......+.++++++++.++++. ... ++++++++++.+++.+.|+++
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 352 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNR---IICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL- 352 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHH---HHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEChHHhhcchHHHHHHHHH---HhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999888776 555542 11233456788888888877642 111 566677778888888877765
Q ss_pred HhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC------CcceeeecCCCHHHHH
Q 015230 326 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDIQ 398 (411)
Q Consensus 326 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~------~~~~~~~~~~t~~~i~ 398 (411)
++.......|+++|+++... +..++.+.|.++ ||.+.|+. ...+|+++..++++++
T Consensus 353 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~ 415 (432)
T 3ei9_A 353 ---GYDVYGGKNAPYVWVHFPNQ--------------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENIL 415 (432)
T ss_dssp ---TCCEEECSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred ---CceecCCCcceEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHH
Confidence 44333334678889888421 124566666654 99998863 3458999888999999
Q ss_pred HHHHHHHHHHH
Q 015230 399 HTITAAEKVLR 409 (411)
Q Consensus 399 ~~i~~l~~~~~ 409 (411)
+++++|++--+
T Consensus 416 ~~l~rl~~~~~ 426 (432)
T 3ei9_A 416 EACRRFKQLYK 426 (432)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999987543
No 101
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.96 E-value=8.5e-30 Score=240.88 Aligned_cols=339 Identities=15% Similarity=0.076 Sum_probs=221.1
Q ss_pred CCCEEEeccCCccccccC--CCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhhCCCCCEEEE--eCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISAVPSIEMVRF--VNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g--~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~~~~~~~v~~--~~~g~~a 104 (411)
.+..++||.++...++.+ +.++.+++++.+.++... .|. +..++++++++++......+++|++ |+||++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 356789999985433444 468999999988876522 221 2355666777766432114688999 9999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.+++++..+.+++.|++..++|++....+ ...|..+..++........ .|++++++.+++.+.++
T Consensus 104 ~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~~~~ 170 (394)
T 2ay1_A 104 LRQALELARMANPDLRVFVSDPTWPNHVSIM-NFMGLPVQTYRYFDAETRG------------VDFEGMKADLAAAKKGD 170 (394)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCHHHHHHH-HHHTCCEEEEECEETTTTE------------ECHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHH-HHcCCceEEEecccccCCc------------cCHHHHHHHHHhCCCCC
Confidence 9999987655556788999999999855443 3344444333221001100 08999999998643346
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCcccccc-CCCcc---hhhhhhhcc-CC
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPD---LTTLGKIIG-GG 256 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~-~~~~d---~~~~sK~~~-~G 256 (411)
++++++..+|++|.+. +.+++++|.++|++||+++|+||+|+++ ..+ .......+ ...++ +.|+||+++ +|
T Consensus 171 ~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 249 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR 249 (394)
T ss_dssp EEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG
T ss_pred EEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC
Confidence 6777677777777654 4666999999999999999999999987 432 11111111 11223 458999999 79
Q ss_pred cccccccc---cHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHHHHHHH
Q 015230 257 LPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 257 ~~~g~~~~---~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+|+||+++ ++++++.+... .........+.++++++++.++++.. .+ ++++++++++.+++.+.|+++
T Consensus 250 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (394)
T 2ay1_A 250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987 66554433210 00111222334788888888887643 11 566777788888888888776
Q ss_pred HHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHHHHHHH
Q 015230 325 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITA 403 (411)
Q Consensus 325 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~~~i~~ 403 (411)
.....+.......|+++|+++.. ..+.+.+.++||++.++ +|+++. ++++++++++++
T Consensus 330 ~~~~~~~~~~~~~g~~~~~~~~~-----------------~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~~ 388 (394)
T 2ay1_A 330 SGSDRFGFVAEHRGMFSRLGATP-----------------EQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILARA 388 (394)
T ss_dssp HTSSTTTHHHHCCSSEEECCCCH-----------------HHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHH
T ss_pred CCCCCeeEEcCCceEEEeeCCCH-----------------HHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHHH
Confidence 42101221122347777765411 45677788899999985 577544 589999999999
Q ss_pred HHHH
Q 015230 404 AEKV 407 (411)
Q Consensus 404 l~~~ 407 (411)
|+++
T Consensus 389 l~~~ 392 (394)
T 2ay1_A 389 IIEV 392 (394)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9875
No 102
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.96 E-value=3.9e-29 Score=236.56 Aligned_cols=336 Identities=13% Similarity=0.029 Sum_probs=223.3
Q ss_pred CEEEeccCCccccccCCC--cHHHHHHHHH-HHHcCC--CCC---CCCHHHHHHHHHHHhhCC---CCC--EEEEeCChH
Q 015230 36 NEYIDYVGSWGPAIIGHA--DDQVLAALGE-TMKKGT--SFG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGT 102 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~--~~~v~~a~~~-~l~~~~--~~~---~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~ 102 (411)
..++||..+...++.+.. +|.+++++.+ +++... .|. +..++++++++++..... .++ ++++|+||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 457999988544455554 4899999999 887632 222 235677888888876654 577 999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCC--CCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP--DSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+|+..++++.....+++.|++..++|++... .....|..+..++.. ...++ |++++++.++++
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~ 170 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVA-IFAGAGFEVSTYPWYDEATNGV--------------RFNDLLATLKTL 170 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHH-HHHHTTCCEEEECCEETTTTEE--------------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHH-HHHHcCCceEEEeeeeccCCcC--------------cHHHHHHHHHhC
Confidence 9999998755455677889999999986533 333445444443331 11111 899999999865
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccc----cccCCCcchhhhhhhc
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ----EYFGVTPDLTTLGKII 253 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~----~~~~~~~d~~~~sK~~ 253 (411)
+.++++++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|+++ ..+ ..... +..+....+.|+||.+
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 249 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLT-NDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCEEEEeCCCCCCCCcCCC-HHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc
Confidence 456777777777777776654 445999999999999999999999987 331 11111 1122233456899999
Q ss_pred c-CCcccccccc---cHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~~---~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ +|+|+||+++ +++.++.+... .......+.+.+.++++++.++++.. .+ ++++++++++.+++.+.
T Consensus 250 ~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 329 (397)
T 3fsl_A 250 SLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKV 329 (397)
T ss_dssp TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 7999999953 45555443210 01111223444667777666555421 11 56677788888888888
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCC-CHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~-t~~~i~~ 399 (411)
|+++....++.......|+++|+.+.. ..+.+.+.++||.+.+++ |+++.. +++++++
T Consensus 330 L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~gi~v~~g~----Ris~~~~~~~~i~~ 388 (397)
T 3fsl_A 330 LSTEMPERNFDYLLNQRGMFSYTGLSA-----------------AQVDRLREEFGVYLIASG----RMCVAGLNTANVQR 388 (397)
T ss_dssp HHHHCTTSCCTHHHHCCSSEEECCCCH-----------------HHHHHHHHTTCEECCTTC----EEEGGGCCTTTHHH
T ss_pred HHhcCCCCCceeecCCceEEEecCCCH-----------------HHHHHHHHhCCEEECCCC----eEEEEecCHhhHHH
Confidence 877632112222223456777765421 456777888999999986 665544 7888999
Q ss_pred HHHHHHHHH
Q 015230 400 TITAAEKVL 408 (411)
Q Consensus 400 ~i~~l~~~~ 408 (411)
++++|++++
T Consensus 389 ~~~~l~~~l 397 (397)
T 3fsl_A 389 VAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 999998763
No 103
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=9.5e-29 Score=235.58 Aligned_cols=337 Identities=10% Similarity=0.010 Sum_probs=226.0
Q ss_pred CCEEEeccCCcccccc-CC-CcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCCCCC---EEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAII-GH-ADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~-g~-~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~~~~---~v~~~~~g~~a~ 105 (411)
|+.++||..+.....- .+ .++.+.+++.+..+.. ..| .+..++++.+++++.... +++ ++++|+||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF-RPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc-CccccccEEECCchHHHH
Confidence 5678999888321111 22 6677877776544321 122 235677888888887665 345 999999999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC-CCCCCCCCceeecCCCCHHHHHHHHHcC--CC
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENN--KG 182 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~ 182 (411)
..+++.. ..+++.|++.+++|++... .....|..+..++..... ++ |++++++.+++. ++
T Consensus 116 ~~~~~~l--~~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~~~~~~~ 178 (418)
T 3rq1_A 116 HHLIHNY--TEPGDEVLTADWYWGAYRV-ICSDTGRTLVTYSLFDEHNNF--------------NHEAFQNRVNELAAKQ 178 (418)
T ss_dssp HHHHHHH--SCTTCEEEEESSCCTHHHH-HHHHTTCEEEEECSBCTTSSB--------------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--cCCCCEEEECCCCchhHHH-HHHHcCCEEEEEeeeCCCCCc--------------CHHHHHHHHHHhhccC
Confidence 9999853 3456889999999886443 334445544444332111 21 899999998742 12
Q ss_pred cEEEEEEccc-CCCCCccCCCHHHHHHHHHHHH------HhCCEEEEecccccc-cccc---CccccccCCCcc---h--
Q 015230 183 EIAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD---L-- 246 (411)
Q Consensus 183 ~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~------~~~~~li~De~~~g~-~~g~---~~~~~~~~~~~d---~-- 246 (411)
..++++++.. +|++|.+.+ .+.+++|+++|+ +||+++|+||+|.+| ..+. .+.....++.++ +
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~-~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 257 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIE-DKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVC 257 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEE
Confidence 3446666544 677777665 444999999999 899999999999988 5542 222222334444 2
Q ss_pred hhhhhhcc-CCcccccccc---cHHHHHHhcCCCCccc-ccCCCCCHHHHHHHHHHHHHH------hc--CChHHHHHHH
Q 015230 247 TTLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKI 313 (411)
Q Consensus 247 ~~~sK~~~-~G~~~g~~~~---~~~~~~~~~~~~~~~~-~~t~~~~~~~~a~~~~~l~~~------~~--~~~~~~~~~~ 313 (411)
.||||.++ +|+|+||+++ ++++++.+........ +...+.+.++++++.++++.. .+ ++++++++++
T Consensus 258 ~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (418)
T 3rq1_A 258 YSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDR 337 (418)
T ss_dssp EESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 38999998 7999999988 8888887763211111 112356778888877776422 11 2455667777
Q ss_pred HHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-C
Q 015230 314 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-H 392 (411)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~ 392 (411)
.+++.+.|+++ ++.......|+++|+++. +..++.+.|.++||.+.|++ +.+|++++ +
T Consensus 338 ~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gi~v~~g~-~~iRis~~~~ 396 (418)
T 3rq1_A 338 ADIFKQEAAQV----GLPMLPYRGGFFITIPTD----------------SANAICEELKKEHIYVIALA-NGIRIAACGI 396 (418)
T ss_dssp HHHHHHHHHHH----TCCCCCCCSSSEEEEECT----------------THHHHHHHHHHTTEECEECS-SEEEEEGGGS
T ss_pred HHHHHHHHHhc----CCCCCCCCceEEEEcCCC----------------CHHHHHHHHHhCCEEEecCC-CCeEEEEecC
Confidence 77777777776 332223445667776552 12578888999999999975 56899876 5
Q ss_pred CHHHHHHHHHHHHHHHHhC
Q 015230 393 SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 393 t~~~i~~~i~~l~~~~~~~ 411 (411)
+++++++++++|+++++++
T Consensus 397 ~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 397 PKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp CHHHHTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 104
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=6.3e-28 Score=230.29 Aligned_cols=302 Identities=13% Similarity=0.100 Sum_probs=210.8
Q ss_pred CCCCHHHHHHHHHHHhhCC-CC---------CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCC
Q 015230 72 GAPCLLENVLAEMVISAVP-SI---------EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 141 (411)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~-~~---------~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~ 141 (411)
.+..++++++++++.+.++ .. ++|++|+|+++|+..+++.. ..+++.|++.+++|++.... ....|.
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~ 154 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQS-LHPLGC 154 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HGGGTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHH-HHHcCC
Confidence 3456889999999988765 32 69999999999999999853 34568899999999875433 333444
Q ss_pred CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---------CcEEEEEEcc-cCCCCCccCCCHHHHHHHHH
Q 015230 142 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---------~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~ 211 (411)
.+..++... .+ .|++++++.+++.+ .++++++++| .+|++|.+. +.+.+++|.+
T Consensus 155 ~~~~v~~~~-~~--------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~ 218 (425)
T 2r2n_A 155 NIINVASDE-SG--------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERKKEIYE 218 (425)
T ss_dssp EEEEECEET-TE--------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHHHHHHH
T ss_pred EEEEeCcCC-CC--------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHHHHHHH
Confidence 333322211 11 18999999997421 3567777765 455567654 5666999999
Q ss_pred HHHHhCCEEEEecccccc-cccc----CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCC
Q 015230 212 ITKENGALLIFDEVMTGF-RLAY----GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~~g~----~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~ 286 (411)
+|++||++||+||+|+++ ..|. ...++..+....+.||||++++|+|+||+++++++++.+.. .....+++.
T Consensus 219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~---~~~~~~~~~ 295 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVIL---HIQVSTLHP 295 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHH---HHHTTTCSS
T ss_pred HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHH---HHHHhcCCC
Confidence 999999999999999987 4442 12222223345567999999989999999999999888763 223346788
Q ss_pred CHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHhcCCc-e-EEeeecceEEEEEecCCCCCcchhc
Q 015230 287 NPLAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGHA-I-CGGYISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 287 ~~~~~a~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
++++++++.++++.+.+ ++++++++++.+++.+.|++. .+.. . .....|+++|+++....
T Consensus 296 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~p~~g~~~~~~~~~~~-------- 364 (425)
T 2r2n_A 296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW---LTGLAEWHVPAAGMFLWIKVKGIN-------- 364 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSEEECCCSBSSEEEEEETTCS--------
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEeCCCceEEEEEEeCCCC--------
Confidence 99999999888875321 344455556666666666553 2322 1 22356888999884321
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCC---------CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+. .+.+.+.|.++||.+.|+. .+.+|+++. .+++++++++++|++++++
T Consensus 365 --~~--~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 365 --DV--KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp --CC--HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred --CH--HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 00 1235788889999998863 245888875 7999999999999998875
No 105
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=5.4e-29 Score=232.02 Aligned_cols=312 Identities=12% Similarity=0.061 Sum_probs=212.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 114 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~ 114 (411)
+.++||.+|. +++|+. |.+ ++... ..|++....++.+.+++.++ .+++|++|+|++++++.+++..
T Consensus 29 ~~~i~l~~~~--~~~~~~-~~v------a~~~~--~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~-- 95 (356)
T 1fg7_A 29 NGDVWLNANE--YPTAVE-FQL------TQQTL--NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF-- 95 (356)
T ss_dssp TCSEECSSCC--CSSCCC-CCC------CCCCT--TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH--
T ss_pred CceEEeeCCC--CCCCCC-HhH------hhhhh--ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH--
Confidence 4689999986 678863 444 22222 22332224566666666666 5789999999999999999853
Q ss_pred ccCC-cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 115 FTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 115 ~~~~-~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
..++ ++|++..++|++....+ ...|..+..++.. .++. .|++++++.++ +++++++++++
T Consensus 96 ~~~g~d~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~--~~~~------------~d~~~l~~~i~----~~~~v~l~~p~ 156 (356)
T 1fg7_A 96 CEPGKDAILYCPPTYGMYSVSA-ETIGVECRTVPTL--DNWQ------------LDLQGISDKLD----GVKVVYVCSPN 156 (356)
T ss_dssp CCTTTCEEEECSSSCTHHHHHH-HHHTCEEEECCCC--TTSC------------CCHHHHHTSCT----TEEEEEEESSC
T ss_pred hCCCCCEEEEeCCChHHHHHHH-HHcCCEEEEeeCC--CCCC------------CCHHHHHHHhc----CCCEEEEeCCC
Confidence 2345 78999999999755443 3445544443322 1110 17888877664 46676666667
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccc-cccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~-~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
|++|.+.+ .+.+++|.++|+ ||+++|+||+|+++ ........ +.++....+.|+||+++ +|+|+||+++++++++
T Consensus 157 nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~ 234 (356)
T 1fg7_A 157 NPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN 234 (356)
T ss_dssp TTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH
T ss_pred CCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHH
Confidence 77787654 566999999999 99999999999977 32222221 22333444669999998 7999999999999988
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHhcCCc-eEEeeecceEEEEEe
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---EPGTYEYLNKITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFT 346 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~ 346 (411)
.+... ..+++.++++++++.++++... .++.+++++++.+++.+.|+++ +.. ...+..|+++++++.
T Consensus 235 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 305 (356)
T 1fg7_A 235 LLMKV-----IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI----PCVEQVFDSETNYILARFK 305 (356)
T ss_dssp HHHHH-----SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEEECCCSSSEEEEEET
T ss_pred HHHHh-----cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCceEECCCCCeEEEEECC
Confidence 87632 2355788999988888875422 1344555666666666666654 421 223446788888773
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEecc-CCC----cceeeecCCCHHHHHHHHHHHHHH
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQF----EAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-~~~----~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
+..++.+.|.++||.+.+ +.. +.+|+++. +++++++++++|+++
T Consensus 306 ----------------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 306 ----------------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp ----------------THHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred ----------------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 126788899999999998 532 35788876 689999999998753
No 106
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=9.4e-28 Score=221.95 Aligned_cols=314 Identities=13% Similarity=0.116 Sum_probs=220.4
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 112 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~ 112 (411)
+.+.++||.+|. ++++ .+|.+++++.+.++.... |+.....++.+.+++.++ .++++++|+|+++++..+++.
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~--y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~- 87 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARINR--YPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAE- 87 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTTS--CCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH-
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhcc--CCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHh-
Confidence 456789999886 6666 789999999998877433 355666788888888887 678999999999999999984
Q ss_pred HhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 113 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 113 ~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
+ +++.|++.+++|++... .....|..+..++.....++ |++++++. . ++++++++.+
T Consensus 88 --~-~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~----~-~~~~v~i~~p 144 (337)
T 3p1t_A 88 --F-SSMRFVTAWPGFDGYRA-RIAVSGLRHFEIGLTDDLLL--------------DPNDLAQV----S-RDDCVVLANP 144 (337)
T ss_dssp --S-TTSEEEEESSSCSHHHH-HHTTSCCEEEEECBCTTSSB--------------CHHHHTTC----C-TTEEEEEESS
T ss_pred --c-CCCeEEEeCCCcHHHHH-HHHHcCCEEEEecCCCCCCC--------------CHHHHHhh----c-CCCEEEEeCC
Confidence 3 67889999999986433 33333443333332211111 77877654 1 3456666666
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 270 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~ 270 (411)
+|++|.+.+ ++++.++|+++++ +|+||+|.+| ..+... ....+....+.|+||.++ +|+|+||+++++++++
T Consensus 145 ~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 218 (337)
T 3p1t_A 145 SNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA 218 (337)
T ss_dssp CTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred CCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence 777888888 8899999999997 5669999877 433221 112222334568999998 8999999999999998
Q ss_pred HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC
Q 015230 271 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 349 (411)
Q Consensus 271 ~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 349 (411)
.+... ..+++.++++++++.++++.... ++.++++.++.+++.+.|+++ ++.. ..+.|.++++...+
T Consensus 219 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~~-- 286 (337)
T 3p1t_A 219 AMKRK-----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----GYRV-ASSEANFVLVENAA-- 286 (337)
T ss_dssp HHHTT-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCB-CCCSSSEEEEECTT--
T ss_pred HHHhh-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----cCEE-CCCCCeEEEEEcCC--
Confidence 88742 23566788888888777753222 344555666666666666654 3322 23457777776521
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----cceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
. ..+.+.|.++||.+.++.. +.+|+++. +++++++++++|+++.+
T Consensus 287 -----------~---~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 287 -----------G---ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----------T---HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred -----------H---HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 1 4677888999999998752 45788866 78999999999998764
No 107
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=1.6e-28 Score=233.88 Aligned_cols=344 Identities=10% Similarity=-0.016 Sum_probs=221.8
Q ss_pred CEEEeccCCccccccC-CCcHHHHHHHHHHHHcCC--CCC---CCCHHHHHHHHHHHhh------CC---CCCEEEEeCC
Q 015230 36 NEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISA------VP---SIEMVRFVNS 100 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g-~~~~~v~~a~~~~l~~~~--~~~---~~~~~~~~l~~~l~~~------~~---~~~~v~~~~~ 100 (411)
+.++||.++....... ..++.+++++.++++... .|+ +..++++.+++++.+. .+ ..++|++|+|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 5689998884321123 378999999999987642 232 2356778888888731 21 4789999999
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+++|+..+++.+ ..+++.|++.+++|++... .....|..+..++.....++ . .|++++++.++.
T Consensus 113 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~-~~~~~g~~~~~v~~~~~~~~---------~---~d~~~l~~~l~~- 176 (416)
T 1bw0_A 113 GSHGILMAITAI--CDAGDYALVPQPGFPHYET-VCKAYGIGMHFYNCRPENDW---------E---ADLDEIRRLKDD- 176 (416)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTHHHH-HHHHTTCEEEEEEEEGGGTT---------E---ECHHHHHHHCCT-
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHH-HHHHcCcEEEEeecCcccCC---------C---CCHHHHHHHhcc-
Confidence 999999999854 3456889999999997543 33334443333221100010 0 188999988863
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-----CccccccCCC---cchhhhhh
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGVT---PDLTTLGK 251 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-----~~~~~~~~~~---~d~~~~sK 251 (411)
+++++++...+|++|.+. +++++++|.++|++||++||+||+|+++ ..|. ......++.. ..+.|+||
T Consensus 177 --~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK 253 (416)
T 1bw0_A 177 --KTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK 253 (416)
T ss_dssp --TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred --CCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchh
Confidence 345544444456677664 5677999999999999999999999987 4443 1122111212 22458999
Q ss_pred hcc-CCcccccccccHH--HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHH
Q 015230 252 IIG-GGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 325 (411)
Q Consensus 252 ~~~-~G~~~g~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~ 325 (411)
+++ +|+|+||++++++ +++.+..........+++.++++++++.++++.... ++.+++++++.+++.+.|+++
T Consensus 254 ~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 332 (416)
T 1bw0_A 254 NLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC- 332 (416)
T ss_dssp TTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred hCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 987 6999999987653 322221000011123667889999998888873211 345556666666666666543
Q ss_pred HhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC----CcceeeecCCCHHHHHH
Q 015230 326 KKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQH 399 (411)
Q Consensus 326 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----~~~~~~~~~~t~~~i~~ 399 (411)
+..... ...|+++|+.+..... +...+...+.+.| .++||.+.++. .+.+|+++..+++++++
T Consensus 333 ---~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~~ 401 (416)
T 1bw0_A 333 ---IGLAPTMPRGAMYLMSRIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYRE 401 (416)
T ss_dssp ---TTEEECCCCBTTEEEEEECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHH
T ss_pred ---CCCcccCCCeeEEEEEeCCHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHHH
Confidence 322222 2347788887742110 0001235677777 58899999874 34589988889999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|.+++++
T Consensus 402 ~l~~l~~~l~~ 412 (416)
T 1bw0_A 402 AVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 108
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=2.3e-28 Score=231.50 Aligned_cols=329 Identities=13% Similarity=0.112 Sum_probs=214.7
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCC----CCCCC-CHHHHHHHHHHHhh--CC--CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP-CLLENVLAEMVISA--VP--SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~----~~~~~-~~~~~~l~~~l~~~--~~--~~~~v~~~~~g~~a 104 (411)
.|+.++||.++. ..++ .+|.+++++.++++... ...|. .....++.+.+++. .+ .+++|++|+|++++
T Consensus 31 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 467889998884 2222 78899999999887521 12232 22234555556555 33 57899999999999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCC-CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+..++.+ +.+++.|++.+++|++.... ....|.. +..++.....++.. |++ + . ++
T Consensus 108 l~~~~~~---~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~~------------~l~---~----~-~~ 163 (400)
T 3asa_A 108 LFRLLSF---FGPNQTVAIQDPSYPAYLDI-ARLTGAKEIIALPCLQENAFFP------------EFP---E----D-TH 163 (400)
T ss_dssp HHHHHHH---HCSSCEEEEEESCCHHHHHH-HHHTTCSEEEEEECCGGGTTCC------------CCC---T----T-CC
T ss_pred HHHHHHH---cCCCCEEEECCCCcHHHHHH-HHHcCCcceEecccchhcCccc------------Chh---h----c-cC
Confidence 9987653 35678899999999875433 3344543 33333221111110 211 1 1 24
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc-CccccccC----CCcchhhhhhhcc-CC
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFG----VTPDLTTLGKIIG-GG 256 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~-~~~~~~~~----~~~d~~~~sK~~~-~G 256 (411)
+++|++++.+|++|.+. +.+.+++|.++|++||+++|+||+|+++ ..+. ......++ ....+.|+||+++ +|
T Consensus 164 ~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 242 (400)
T 3asa_A 164 IDILCLCSPNNPTGTVL-NKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG 242 (400)
T ss_dssp CSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT
T ss_pred ccEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc
Confidence 56666656667777665 4666999999999999999999999988 4442 11221222 2233669999998 89
Q ss_pred cccccccccHHH-------HHHhcCCCCcccccCC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 257 LPVGAYGGRRDI-------MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 257 ~~~g~~~~~~~~-------~~~~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+|+||+++++++ ++.+.. .....++ +.++++++++.++++....++++++++++.+++.+.|+++
T Consensus 243 lriG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---- 315 (400)
T 3asa_A 243 IRLGWTVIPQELTYADGHFVIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT---- 315 (400)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----
T ss_pred hheeEEeeChhhccchhhhHHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 999999888776 444421 1112233 5788999888888876423677888888888888888765
Q ss_pred CCceEEeeecceEEEE-EecCCCCCcchhcccchHHHHHHHHHHHH-cCeEeccCC------CcceeeecCCCHHHHHHH
Q 015230 329 GHAICGGYISGMFGFF-FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|++ +... . +..++.+.|.+ +||.+.++. .+.+|+++..++++++++
T Consensus 316 g~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~ 382 (400)
T 3asa_A 316 GFEVFGGEHAPYLWVKPTQAN-I------------SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAA 382 (400)
T ss_dssp TCEEEECSSSSEEEEECCCTT-C------------CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHH
T ss_pred CCeeeCCCCceEEEEeccCCC-C------------CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHH
Confidence 3332222347888988 6321 0 01356666665 599998863 245899888899999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|++++++
T Consensus 383 l~~l~~~~~~ 392 (400)
T 3asa_A 383 CERLQMAPAL 392 (400)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 109
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=1.2e-28 Score=230.93 Aligned_cols=316 Identities=12% Similarity=0.105 Sum_probs=220.7
Q ss_pred cCCCcHHHHHHHHHHHHcCC--------CC-CCCCHHHHHHHHH-HHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCc
Q 015230 50 IGHADDQVLAALGETMKKGT--------SF-GAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~--------~~-~~~~~~~~~l~~~-l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~ 119 (411)
.+..++++++++.+.++... .. .++.....++.++ +++.++.. ++++|+|+++|+..+++.+ ..+++
T Consensus 18 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~--~~~gd 94 (371)
T 2e7j_A 18 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSL--AKKDA 94 (371)
T ss_dssp TCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHH--CCTTC
T ss_pred CCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHH--hCCCC
Confidence 45578999999998887632 11 1245567888898 98888644 9999999999999999864 45678
Q ss_pred EEEEEeCCcCCCchhhhhhcCCCCcccC--CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC--CcEEEEEEcccCCC
Q 015230 120 RIIKFEGCYHGHADPFLVKAGSGVATLG--LPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEIAAIILEPVVGN 195 (411)
Q Consensus 120 ~vi~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~--~~~~~vi~~~~~~~ 195 (411)
.|++.+++|++.... ....|..+..++ ......+ |++++++.++++. +++++|++++++++
T Consensus 95 ~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~--------------d~~~l~~~l~~~~~~~~~~~v~~~~~~np 159 (371)
T 2e7j_A 95 WVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDYAI--------------TPENFAQTIEETKKRGEVVLALITYPDGN 159 (371)
T ss_dssp EEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTCCC--------------CHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred EEEEccCcchHHHHH-HHHcCCeEEEeecccCCCCCc--------------CHHHHHHHHHhhcccCCeEEEEEECCCCC
Confidence 899999999876555 444455444433 2111111 8999999997531 36788999999889
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHH-hcC
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM-VAP 274 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~-~~~ 274 (411)
+|.+.+ +++|.++|++||+++|+||+|+.+..+ .....++.+..+.|+||++++|.|+|++++++++++. +..
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~ 233 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRR 233 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCB
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECccccCCCC--CChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccc
Confidence 999888 899999999999999999999844111 1122233333345889999987799999999888776 654
Q ss_pred CCCccccc-----CCCCCHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHHHHHHHHhcCCceEEee--ecceEEEEE
Q 015230 275 AGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFF 345 (411)
Q Consensus 275 ~~~~~~~~-----t~~~~~~~~a~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~ 345 (411)
....+ .. +.+.++.+++++.++++.+.. ++.+++ +++.+++.+.|+++ ++...... .+.++++++
T Consensus 234 ~~~~~-~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 307 (371)
T 2e7j_A 234 SEKYK-NKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLGDNPHNHDLMFFHA 307 (371)
T ss_dssp CSSCT-TSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEESSSSCCSSEEEEEC
T ss_pred cccCc-ccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEecCCCccCceEEEEC
Confidence 32211 12 456677778777778877654 566777 88888888888775 22221111 367888876
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC-------C--Cccee-eecC---CCHHHHHHHHHHHHHHHHhC
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~--~~~~~-~~~~---~t~~~i~~~i~~l~~~~~~~ 411 (411)
. +..++.+.|.++||.+.+. + ...+| +++. +|++++++++++|+++++++
T Consensus 308 ~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 308 E----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp H----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 2 2367888888889998761 1 34578 7654 79999999999999998764
No 110
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.96 E-value=4.2e-28 Score=230.63 Aligned_cols=340 Identities=14% Similarity=0.054 Sum_probs=221.4
Q ss_pred CCCEEEeccCCccccccCC--CcHHHHHHHHH-HHHcCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEEE--eCC
Q 015230 34 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGE-TMKKGT--SF---GAPCLLENVLAEMVISAVP---SIEMVRF--VNS 100 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~-~l~~~~--~~---~~~~~~~~~l~~~l~~~~~---~~~~v~~--~~~ 100 (411)
+|+.++||.++...++.+. .++.+++++.+ .++... .| .+..++++.+++++....+ .+++|++ |+|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 4677899998843222333 56889999988 776421 22 1245667777777765443 4689999 999
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 101 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 101 g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
|++|++.+++++..+.+++.|++..++|++....+ ...|..+..++..+..+.. .|++++++.++..
T Consensus 107 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 107 GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETKS------------LDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTTE------------ECHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH-HHcCceEEEEeeecCCCCc------------cCHHHHHHHHHhC
Confidence 99999999765545567788999999999754433 3334443333220000110 1899999999864
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc---cCccc-c--ccC----CCcchhhh
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ-E--YFG----VTPDLTTL 249 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g---~~~~~-~--~~~----~~~d~~~~ 249 (411)
+...+++++...+|++|.+. +.+.+++|.++|++||+++|+||+|.+| ..+ ..... . ..+ ....+.|+
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence 33345555455556666554 4555999999999999999999999887 433 21111 1 111 11225589
Q ss_pred hhhccC-Cccccccc--c-----cHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-------c-CChHHH
Q 015230 250 GKIIGG-GLPVGAYG--G-----RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-------E-PGTYEY 309 (411)
Q Consensus 250 sK~~~~-G~~~g~~~--~-----~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-------~-~~~~~~ 309 (411)
||.++. |+|+||++ + +++ +++.+.. .....+.+.++++++++.++++... . ++++++
T Consensus 253 sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1yaa_A 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999996 99999997 6 666 6666652 1122234558888888888886441 1 566777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 389 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~ 389 (411)
++++.+++.+.|+++.....+.......|+++|+.+. ...+.+.+.++||.+.+ .+|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~----~~Ris 388 (412)
T 1yaa_A 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------------PQMVKRLEETHAVYLVA----SGRAS 388 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCT----TSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC-----------------HHHHHHHHHhCCEEecc----CcEEE
Confidence 7788888888887763100122222334566554331 13565666678999987 47886
Q ss_pred cCC-CHHHHHHHHHHHHHHHHhC
Q 015230 390 LAH-SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 390 ~~~-t~~~i~~~i~~l~~~~~~~ 411 (411)
+.. +++++++++++|+++++.+
T Consensus 389 ~~~~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 389 IAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EccCCHhHHHHHHHHHHHHHHhh
Confidence 654 9999999999999988753
No 111
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.96 E-value=7.8e-28 Score=228.86 Aligned_cols=334 Identities=11% Similarity=0.070 Sum_probs=218.3
Q ss_pred CCEEEeccCCccccccCC--CcHHHHHHHHHHHHcC-CCC---CCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACM 106 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~-~~~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~ 106 (411)
|+.++||..+....+.+. .++.+.+++.+..... ..| .+..++++++++++....+ ..+++++|+||++|+.
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 568899999843222223 5677877776533321 122 3456778889988876652 2349999999999999
Q ss_pred HHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC-CCCCCCCCceeecCCCCHHHHHHHHHcC--CCc
Q 015230 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENLFENN--KGE 183 (411)
Q Consensus 107 ~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~ 183 (411)
.+++.. ..+++.|++.+++|++.. ......|..+..++..... ++ |++++++.++.. ++.
T Consensus 116 ~~~~~~--~~~gd~Vl~~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~--------------d~~~l~~~l~~~~~~~~ 178 (413)
T 3t18_A 116 SAIFSY--LDEGDPLICHDYYWAPYR-KICEEFGRNFKTFEFFTDDFAF--------------NIDVYKEAIDEGIRDSD 178 (413)
T ss_dssp HHHHHH--CCSSCEEEEESSCCTHHH-HHHHHHTCEEEEECCBCTTSSB--------------CHHHHHHHHHHHHHHCS
T ss_pred HHHHHh--cCCCCEEEECCCCcccHH-HHHHHhCCeEEEeeccCCCCCc--------------CHHHHHHHHHHHhhcCC
Confidence 999853 345678999888887543 3444556555554432111 22 899999998742 123
Q ss_pred EEEEEEccc-CCCCCccCCCHHHHHHHHHHHH------HhCCEEEEecccccc-ccccC---ccccccCCCcc---h--h
Q 015230 184 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAYG---GAQEYFGVTPD---L--T 247 (411)
Q Consensus 184 ~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~------~~~~~li~De~~~g~-~~g~~---~~~~~~~~~~d---~--~ 247 (411)
.++++++++ +|++|.+.+. +.+++|+++|+ +||++||+||+|.+| ..+.. +.....++.++ + .
T Consensus 179 ~~~vi~~~p~~NPtG~~~~~-~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (413)
T 3t18_A 179 RIASLINSPGNNPTGYSLSD-EEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAF 257 (413)
T ss_dssp EEEEEEECSSCTTTCCCCCH-HHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCH-HHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEE
Confidence 446666654 6777877654 44999999999 899999999999988 55531 12222233334 2 3
Q ss_pred hhhhhcc-CCcccccccc---cHHHHHHhcCCCCccc-ccCCCCCHHHHHHHHHHHHHH-----hc--CChHHHHHHHHH
Q 015230 248 TLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRL-----KE--PGTYEYLNKITG 315 (411)
Q Consensus 248 ~~sK~~~-~G~~~g~~~~---~~~~~~~~~~~~~~~~-~~t~~~~~~~~a~~~~~l~~~-----~~--~~~~~~~~~~~~ 315 (411)
|+||.++ +|+|+||+++ ++++++.+........ +...+.+.++++++.++++.. .+ ++++++++++.+
T Consensus 258 S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 337 (413)
T 3t18_A 258 SMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRAD 337 (413)
T ss_dssp EHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999 7999999988 8888888763211111 112356778888877766432 11 345566777777
Q ss_pred HHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCH
Q 015230 316 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSS 394 (411)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~ 394 (411)
++.+.|+++ ++.......|+++|+++.+ ..++.+.|.++||.+.++. +.+|+++. .++
T Consensus 338 ~l~~~l~~~----g~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gv~v~~g~-~~iRis~~~~~~ 396 (413)
T 3t18_A 338 VFVTAAKEN----KLTMIPYFGGFFTFIPTDK----------------AFDIVKDLEKENIFTIPSA-KGIRVAICGVGE 396 (413)
T ss_dssp HHHHHHHHT----TCCCBCCCSSSCEEEECSC----------------HHHHHHHHHHTTEECEECS-SEEEECTTTSCG
T ss_pred HHHHHHHHc----CCCccCCCceEEEEeCCCC----------------HHHHHHHHHhCCEEEecCC-CceEEEEeeCCH
Confidence 777777665 3322233456677775511 2577888999999999974 56898755 355
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
+++ +++|.+++++
T Consensus 397 ~~~---l~~l~~~l~~ 409 (413)
T 3t18_A 397 EKI---PKLVQRLAFY 409 (413)
T ss_dssp GGH---HHHHHHHHHH
T ss_pred HHH---HHHHHHHHHH
Confidence 555 7777766654
No 112
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=4.1e-28 Score=233.04 Aligned_cols=312 Identities=16% Similarity=0.104 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCc--------------EEEEE-eCCcCCCchhh
Q 015230 74 PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRE--------------RIIKF-EGCYHGHADPF 135 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~--------------~vi~~-~~~~~~~~~~~ 135 (411)
..++++++++++.+.++ .+++|++|+|+++|+..+++.+ ...++ .||+. +++|++.....
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l--~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLF--GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHS--SEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHH--hCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 35778888888877654 5789999999999999999853 22222 46654 77887654322
Q ss_pred h---hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 136 L---VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 136 ~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
. ...+.+....+.+.... .+...+ .-|++++++++++..+++++|+++..+|++|.+.+ .+.+++|.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~----~g~~~~---~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~-~~~l~~i~~~ 234 (444)
T 3if2_A 163 VEGQHFAAVLPHIDEVTHDGE----EGFFKY---RVDFEALENLPALKEGRIGAICCSRPTNPTGNVLT-DEEMAHLAEI 234 (444)
T ss_dssp SSSCCEEECCCEEEEEEETTE----EEEEEE---ECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCC-HHHHHHHHHH
T ss_pred cccchhhccCceEEecccccc----cCcccc---CCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCC-HHHHHHHHHH
Confidence 1 11111111111110000 000000 01899999875432246777777655667777655 4559999999
Q ss_pred HHHhCCEEEEecccccccccc-C--ccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHH
Q 015230 213 TKENGALLIFDEVMTGFRLAY-G--GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 289 (411)
Q Consensus 213 ~~~~~~~li~De~~~g~~~g~-~--~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 289 (411)
|++||++||+||+|+.+..+. . ......+...++.|+||...+|+|+||+++++++++.+.. .....+++.+++
T Consensus 235 a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~~ 311 (444)
T 3if2_A 235 AKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSA---MNAVVNLAPTRF 311 (444)
T ss_dssp HHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHH---HHHHHHSSCCCH
T ss_pred HHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHH---HHHhccCCCChH
Confidence 999999999999997431111 0 0011223445577999985578999999999999888763 223345677888
Q ss_pred HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHH
Q 015230 290 AMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364 (411)
Q Consensus 290 ~~a~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (411)
+++++.+.++.... +.++++++++.+.+.+.|++.....++.......|+++|+++.... .+.
T Consensus 312 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~------------~~~ 379 (444)
T 3if2_A 312 GAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLP------------IST 379 (444)
T ss_dssp HHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCS------------SCH
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCC------------CCH
Confidence 88888777653211 2355666777777777776653322222223456888999884311 123
Q ss_pred HHHHHHHHHcCeEeccCCC--------------cceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 365 ARFYRGMLEEGVYFAPSQF--------------EAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 365 ~~~~~~l~~~Gi~v~~~~~--------------~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+.+.|.++||.+.++.. +.+|+++..+++++++++++|.+++++
T Consensus 380 ~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 380 LDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp HHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 6788889999999988642 247888777999999999999998865
No 113
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.4e-27 Score=222.18 Aligned_cols=315 Identities=14% Similarity=0.080 Sum_probs=216.9
Q ss_pred CcHHHHHHHHHHHHcCCCC--C--CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-----------c
Q 015230 53 ADDQVLAALGETMKKGTSF--G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~--~--~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-----------~ 116 (411)
.+|++.+++.+++...... . ...+..+++.+++++.++ ..+++++|+||++|+..+++.++.. .
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 5789999999988763221 1 125566789999999998 6889999999999999999876543 2
Q ss_pred CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 117 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+++.|++..++|++. .......|..+..++......+ |++++++.+++. ++++++++++++++
T Consensus 122 ~gd~vl~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSF-EKGREMMDLEYIYAPIKEDYTI--------------DEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHH-HHHHHHHTCEEEEECBCTTSSB--------------CHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHH-HHHHHHcCceeEEEeeCCCCcC--------------CHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 367888888888764 3344444554444333211111 899999999853 46677777777888
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--ccc---------CccccccCCCcchhhhhhhccCCcccccccc
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~---------~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~ 264 (411)
|.+.+ +++|.++|++||+++|+||+|+++ . .+. .+.... +.+..+.+++|.+++|+++|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 88887 999999999999999999999865 2 221 223333 555667789999888889999866
Q ss_pred c-HHHHHHhcCCCCccc--------ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe
Q 015230 265 R-RDIMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335 (411)
Q Consensus 265 ~-~~~~~~~~~~~~~~~--------~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (411)
+ +.+.+.+....+.+. +++...+.+++.++.+.+.....++..++.+++.+++.+.|+++ .+.... .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~--~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKPVI--E 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCBSS--C
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEc--C
Confidence 5 445554432111111 11223355566666555543222667778888888888888876 222221 2
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-cceeeec--CCCHHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSL--AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~~~~~~--~~t~~~i~~~i~~l~~~~~ 409 (411)
+.+.++++.+.+ ...+.+.|.++||.+.++.. +.+|+++ .+|++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDED----------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECTT----------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeCC----------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 446677776521 26789999999999998864 5678754 4799999999999998875
No 114
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=1.3e-26 Score=219.66 Aligned_cols=328 Identities=14% Similarity=0.128 Sum_probs=222.1
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC--CC-------CCHHHHHHHHHHHhhCCC--CCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GA-------PCLLENVLAEMVISAVPS--IEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~--~~-------~~~~~~~l~~~l~~~~~~--~~~v~~~~~g~ 102 (411)
+|+.+++|..+. + ++.++++++++.++++..... .+ +.....++.+.+++.++. .+++++|+|++
T Consensus 20 ~g~~~i~l~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAA---S-AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTT---C-CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc---c-CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 444455544442 1 357899999999999874211 01 244567889999998874 68999999999
Q ss_pred HHHHHHHHHHHh--ccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 103 EACMGVLRLARA--FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 103 ~a~~~al~~~~~--~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+|+..+++.++. ..+++.|++..++||+..... ....|..+..++.... +. .|++++++.+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-------------~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD-GT-------------LQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT-SC-------------BCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCC-CC-------------cCHHHHHHHh
Confidence 999999986532 456789999999999876443 2233544444332211 10 1788888888
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~ 255 (411)
+ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.... ......+ .+|+ .|+||.++.
T Consensus 162 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~~--~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 162 D---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQAL--DCDFYVFSGHKLYGP 230 (406)
T ss_dssp C---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHH--TCSEEEEEGGGTTSC
T ss_pred c---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCccccc--CCCEEEEEchhccCC
Confidence 6 36889999999999999988 99999999999999999999973211 1112222 3454 479999963
Q ss_pred -CcccccccccHHHHHHhcCCCCccc------------------ccCCCCCHHHHHHHH-HHHHHHhc---CChHHHHHH
Q 015230 256 -GLPVGAYGGRRDIMEMVAPAGPMYQ------------------AGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNK 312 (411)
Q Consensus 256 -G~~~g~~~~~~~~~~~~~~~~~~~~------------------~~t~~~~~~~~a~~~-~~l~~~~~---~~~~~~~~~ 312 (411)
| +|++++++++++.+.+...... ....+.+++++.++. ++++.+.+ +++++++++
T Consensus 231 ~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 TG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp TT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 8999999999988864321100 011233455555554 66776653 456666777
Q ss_pred HHHHHHHHHHHHHHhcCCceEEee--ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------
Q 015230 313 ITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 382 (411)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------- 382 (411)
+.+++.+.|+++ +....... .|.++.+.+.+. +..++.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~ 370 (406)
T 1kmj_A 309 LMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH--------------HAYDVGSFLDNYGIAVRTGHHCAMPLMA 370 (406)
T ss_dssp HHHHHHHHHTTS----TTEEEESCTTCCSEEEEEETTC--------------CHHHHHHHHHHTTEECEEECTTCHHHHH
T ss_pred HHHHHHHHHhcC----CCeEEecCCCcCCEEEEEECCC--------------CHHHHHHHHhhCCcEEEeccccchHHHH
Confidence 777777777653 32222233 577777766310 12567889999999998764
Q ss_pred ----Ccceeeec--CCCHHHHHHHHHHHHHHHHh
Q 015230 383 ----FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ----~~~~~~~~--~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+++ .+|++++++++++|+++++.
T Consensus 371 ~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 371 YYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 24578754 45999999999999998765
No 115
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.95 E-value=4.1e-27 Score=221.74 Aligned_cols=317 Identities=13% Similarity=0.078 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-C-CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCc
Q 015230 52 HADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 128 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~ 128 (411)
+.++++++++.+.+.. .++ ...+.++++++++++.++ . .+++++|+||++|+..+++.+ ..+++.|++.+++|
T Consensus 30 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l--~~~gd~vl~~~~~~ 105 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG--VSKGGKVLVTIIGA 105 (386)
T ss_dssp CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH--SCTTCEEEEEESSH
T ss_pred CCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh--hcCCCeEEEEcCCc
Confidence 4678888887666543 221 115677899999999887 3 467999999999999999854 34678999999999
Q ss_pred CCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 129 HGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 129 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
++. +.......|..+..++... .+. .|++++++.+++. +++++|+++++++++|.+.+ ++
T Consensus 106 ~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~ 166 (386)
T 2dr1_A 106 FGKRYKEVVESNGRKAVVLEYEP-GKA-------------VKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP----LP 166 (386)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCT-TCC-------------CCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HH
T ss_pred hhHHHHHHHHHhCCceEEEecCC-CCC-------------CCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC----HH
Confidence 873 2233334454444433221 110 2899999999643 35778888888888898887 99
Q ss_pred HHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC---------
Q 015230 208 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG--------- 276 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~--------- 276 (411)
+|.++|++||+++|+||+|+..... .....+ .+|++ ++||+++++.++|++++++++++.+....
T Consensus 167 ~i~~l~~~~~~~li~D~a~~~~~~~--~~~~~~--~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (386)
T 2dr1_A 167 ELAKVAKEHDKLVFVDAVSAMGGAD--IKFDKW--GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIP 242 (386)
T ss_dssp HHHHHHHHTTCEEEEECTTTBTTBC--CCTTTT--TCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHH
T ss_pred HHHHHHHHcCCeEEEEccccccCcc--cccccc--CCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHH
Confidence 9999999999999999999733111 112222 34544 67799996545899999999888774210
Q ss_pred ----Cc--ccccCCCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEE
Q 015230 277 ----PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFF 345 (411)
Q Consensus 277 ----~~--~~~~t~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~ 345 (411)
.. ....+++.++++++++.++++.+.+. +++++++++.+++.+.|+++ .+..... ....+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~ 320 (386)
T 2dr1_A 243 LYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDILAEPGHESPTITAVLT 320 (386)
T ss_dssp HHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSCTTCBCSSEEEEEC
T ss_pred HHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCeeCcCccccCCceEEEEc
Confidence 00 11335677888898888888876533 56778888888888888775 2222111 011467888877
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
.. ..+..++.+.|.++||.+.++. .+.+|+++. +|++++++++++|++++++
T Consensus 321 ~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 321 PP-------------GIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp CT-------------TCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CC-------------CCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 32 1123678999999999999864 346788655 7999999999999998865
No 116
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.95 E-value=4.3e-26 Score=217.24 Aligned_cols=330 Identities=14% Similarity=0.134 Sum_probs=224.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCC------CCCC---CHHHHHHHHHHHhhCCC--CCEEEEeCChH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS------FGAP---CLLENVLAEMVISAVPS--IEMVRFVNSGT 102 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~------~~~~---~~~~~~l~~~l~~~~~~--~~~v~~~~~g~ 102 (411)
+|+.+++|..+ .+ ++.++.+++++.++++.... +.+. .....++.+.+++.++. ++++++|+||+
T Consensus 25 ~g~~~i~l~~~---~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNA---AT-SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTT---TC-CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCC---cc-CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 56677888777 33 36789999999999987321 1121 24467888888888863 58999999999
Q ss_pred HHHHHHHHHHHh--ccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 103 EACMGVLRLARA--FTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 103 ~a~~~al~~~~~--~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+|++.+++.+.. ..+++.|++..++|++.... .....|..+..++.. .... .|++++++++
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~------------~d~~~l~~~l 166 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQES------------FDLEHFKTLL 166 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSS------------BCHHHHHHHC
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCC------------cCHHHHHHhh
Confidence 999999986521 45678899999999986422 223345544443332 1110 1899999888
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcch--hhhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~ 255 (411)
+ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.... ......++ +|+ .++||.+++
T Consensus 167 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~--~di~~~s~sK~~~~ 235 (420)
T 1t3i_A 167 S---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHY--PLDVQLID--CDWLVASGHKMCAP 235 (420)
T ss_dssp C---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CSEEEEEGGGTTSC
T ss_pred C---CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCc--cCchhhcC--CCEEEEehhhhcCC
Confidence 6 36888999999898999988 99999999999999999999973211 11222233 454 467897663
Q ss_pred CcccccccccHHHHHHhcCCCCccc-----------------ccCCCCCHHHHHHHHH-HHHHHhc---CChHHHHHHHH
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQ-----------------AGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKIT 314 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~-----------------~~t~~~~~~~~a~~~~-~l~~~~~---~~~~~~~~~~~ 314 (411)
..+|++++++++++.+........ ..+.+.+++++.++.. +++.+.+ ++++++.+++.
T Consensus 236 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 314 (420)
T 1t3i_A 236 -TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELT 314 (420)
T ss_dssp -TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 128999999999888865322110 0122345555555544 5666543 45667777777
Q ss_pred HHHHHHHHHHHHhcCCceEEee------ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------
Q 015230 315 GELTQGIIDAGKKAGHAICGGY------ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------ 382 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------ 382 (411)
+++.+.|+++ +....... .|.++++.+... +..++.+.|.++||.+.++.
T Consensus 315 ~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 315 HYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAGL--------------HASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETTB--------------CHHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECCC--------------CHHHHHHHHHHCCeEEeeccccchHH
Confidence 7777777664 22222222 377777776310 12567889999999999872
Q ss_pred ------CcceeeecC--CCHHHHHHHHHHHHHHHHhC
Q 015230 383 ------FEAGFTSLA--HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 383 ------~~~~~~~~~--~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+.+|+++. ++++++++++++|+++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 356888655 59999999999999988753
No 117
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=2.5e-27 Score=225.62 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=213.7
Q ss_pred CEEEeccCCccccccCCC--cHHHHHHHHHHHHcC------CCCCC---CCHHHHHHHHHHHhhCC---CCCEEEEeCCh
Q 015230 36 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSG 101 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~--~~~v~~a~~~~l~~~------~~~~~---~~~~~~~l~~~l~~~~~---~~~~v~~~~~g 101 (411)
..++||..+ .+.... .+.+.+++.+.+.+. ..|+. ..++++++++++.+.++ .+++|++|+|+
T Consensus 31 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGG---NPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCC---CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCc---CCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 567888887 343321 144566666555432 12322 25677888888877654 57899999999
Q ss_pred HHHHHHHHHHHHhccCCc-----EEEEE-eCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCC-----
Q 015230 102 TEACMGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPF----- 167 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~-----~vi~~-~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (411)
++|+..+++.+. ..++ .|++. +++|++........ .+... .+..++.
T Consensus 108 t~al~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ 168 (417)
T 3g7q_A 108 QSAFFYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARP-----------------NIELLPEGQFKY 168 (417)
T ss_dssp HHHHHHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCEEECCC-----------------EEEEEGGGEEEE
T ss_pred HHHHHHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhhccccC-----------------cccccCCccccc
Confidence 999999998642 2222 77776 88888644332111 01111 1111111
Q ss_pred -CCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-Ccc--ccccCCC
Q 015230 168 -NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGA--QEYFGVT 243 (411)
Q Consensus 168 -~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~--~~~~~~~ 243 (411)
-|+++++ + .+++++++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|..+..+. ... .+..+..
T Consensus 169 ~~d~~~l~--~---~~~~~~v~~~~p~NptG~~~~-~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 3g7q_A 169 HVDFEHLH--I---GEETGMICVSRPTNPTGNVIT-DEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNI 242 (417)
T ss_dssp ECCGGGCC--C---CTTEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTE
T ss_pred ccCHHHhc--c---ccCceEEEECCCCCCCCCccC-HHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCE
Confidence 1666665 2 246777777766777787665 4449999999999999999999997431111 000 1112333
Q ss_pred cchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHH
Q 015230 244 PDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELT 318 (411)
Q Consensus 244 ~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-----~~~~~~~~~~~~~~~ 318 (411)
..+.|+||...+|+|+||+++++++++.+.. .....+++.++++++++.+.++.... +.++++++++.+.+.
T Consensus 243 i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T 3g7q_A 243 ILCMSLSKLGLPGSRCGIIIANDKTITAIAN---MNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTI 319 (417)
T ss_dssp EEEEESGGGTCTTSCCEEEECCHHHHHHHHH---HHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEEechhccCCCcceEEEEeCHHHHHHHHH---hhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4467999954479999999999999888763 22344667788888888877753211 235566677777777
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-------------Ccc
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEA 385 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------------~~~ 385 (411)
+.|++.....++.......|+++|+++.... .+..++.+.|.++||.+.++. .+.
T Consensus 320 ~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~------------~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~ 387 (417)
T 3g7q_A 320 AIIRRYLSEERCLIHKPEGAIFLWLWFKDLP------------ITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQC 387 (417)
T ss_dssp HHHHHHCCTTTCEEECCCBSSEEEEECTTCS------------SCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGE
T ss_pred HHHHHhcccCCceeeCCCcceEEEEEcCCCC------------CCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCe
Confidence 7777653332333333456889999884311 123678888999999998863 235
Q ss_pred eeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 386 GFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 386 ~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+|+++..+++++++++++|.+++++
T Consensus 388 iRis~~~~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 388 MRMNYVPEPDKIEAGVKILAEEIER 412 (417)
T ss_dssp EEEESCSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 7888777999999999999998865
No 118
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=6.9e-28 Score=229.95 Aligned_cols=338 Identities=12% Similarity=0.055 Sum_probs=219.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHH--HHHHcCC-CCCC--CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHH--HHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALG--ETMKKGT-SFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVL 109 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~--~~l~~~~-~~~~--~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~--~al 109 (411)
.+||..+.........++++++++. +.++... ...| ...-..++.+.+++.++ .+++|++|+|+++++. .++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 106 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLT 106 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHH
Confidence 4777777321111224556777764 4443221 1223 22224566666666666 6789999999999997 777
Q ss_pred HHHHhc-cC--------CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 110 RLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 110 ~~~~~~-~~--------~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+..... .+ ++.|++.+++|++.... ....|..+..++... .++ |++++++++++.
T Consensus 107 ~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~-~g~--------------d~~~l~~~l~~~ 170 (423)
T 3ez1_A 107 FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLL-LQTLGFELLTVDMQS-DGP--------------DVDAVERLAGTD 170 (423)
T ss_dssp HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHH-HHHHTCEEEEEEEET-TEE--------------CHHHHHHHHHSC
T ss_pred HHHhccCCCccccccCCCCEEEEcCCCcHHHHHH-HHHcCCEEEeccCCC-CCC--------------CHHHHHHHHhhC
Confidence 643221 23 58899999999875443 334444333332211 111 899999999632
Q ss_pred CCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHH-HHhCCEEEEecccccc-ccc--cCc---cc------cccCCCcch
Q 015230 181 KGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGF-RLA--YGG---AQ------EYFGVTPDL 246 (411)
Q Consensus 181 ~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~-~~~~~~li~De~~~g~-~~g--~~~---~~------~~~~~~~d~ 246 (411)
.++++|+++|. +|++|.+.+ .+.+++|+++| ++||+++|+||+|+.+ ..+ ... .. +..+....+
T Consensus 171 -~~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 171 -PSVKGILFVPTYSNPGGETIS-LEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp -TTEEEEEECSSSCTTTCCCCC-HHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred -CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 46888887764 455666655 44599999999 9999999999999843 221 111 11 122334456
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-Hh---c--CChHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LK---E--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-~~---~--~~~~~~~~~~~~~~~~~ 320 (411)
.||||.+.+|+|+||+++++++++.+.. .....+++.+++++.++.++++. .. . ++.++.++++.+.+.+.
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLSK---YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHHH---HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999996689999999999999888763 22344678889999888888775 11 1 23344455555556666
Q ss_pred HHHHHHhcC-Cc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceee
Q 015230 321 IIDAGKKAG-HA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT 388 (411)
Q Consensus 321 l~~~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~ 388 (411)
|.+.....+ .. ......|+++|+++... +...+.+.|.++||.+.+++ .+.+|+
T Consensus 326 l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRi 391 (423)
T 3ez1_A 326 LRAELGEGGEYATWTLPKGGYFISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRL 391 (423)
T ss_dssp HHHHHTTTTSSEEECCCSBSSCEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEE
T ss_pred HHHhcCcCCCceEEeCCCccEEEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEE
Confidence 655433333 12 12234688999988431 13678889999999999832 245788
Q ss_pred ecCC-CHHHHHHHHHHHHHHHHh
Q 015230 389 SLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
++.. +++++++++++|.+++++
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 392 APTRPPVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 7654 999999999999998865
No 119
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=2.7e-27 Score=218.77 Aligned_cols=308 Identities=11% Similarity=0.081 Sum_probs=202.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHHHHHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~~al~~ 111 (411)
..++||.++. ++++ .+|++++++.+++.......|+.....++.+.+++.++ .++++++|+|+++++..+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 3578998884 3344 68999999999873211112222123444444444443 468999999999999999984
Q ss_pred HHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE-Ec
Q 015230 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII-LE 190 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi-~~ 190 (411)
+ ++.|++. ++|++.... ....|..+..++......+ |++++ +++++|+ ++
T Consensus 96 ---~--gd~Vl~~-p~y~~~~~~-~~~~g~~~~~v~~~~~~~~--------------d~~~l--------~~~~~v~l~~ 146 (335)
T 1uu1_A 96 ---F--DRSVFFP-PTYSCYRIF-AKAVGAKFLEVPLTKDLRI--------------PEVNV--------GEGDVVFIPN 146 (335)
T ss_dssp ---S--SEEEECS-SSCHHHHHH-HHHHTCEEEECCCCTTSCC--------------CCCCC--------CTTEEEEEES
T ss_pred ---h--CCcEEEC-CCcHHHHHH-HHHcCCeEEEeccCCCCCC--------------CHHHc--------CCCCEEEEeC
Confidence 3 5788888 999875443 3344554444332111011 33333 1345555 55
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
| +|++|.+.+ .+++.++++.+| ++|+||+|+++ ........+..+....+.|+||+++ +|+|+||+++++++
T Consensus 147 p-~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 220 (335)
T 1uu1_A 147 P-NNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKF 220 (335)
T ss_dssp S-CTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHH
T ss_pred C-CCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHH
Confidence 6 566777776 555666666558 89999999877 3211111222333455679999998 79999999999999
Q ss_pred HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEec
Q 015230 269 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347 (411)
Q Consensus 269 ~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 347 (411)
++.+... ..+++.++++++++.++++..+. ++.+++++++.+++.+.|+++ ++.. ....|+++++.+.
T Consensus 221 ~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~- 289 (335)
T 1uu1_A 221 IDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYRI-TDSRGNFVFVFME- 289 (335)
T ss_dssp HHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCCCSSEEEEECC-
T ss_pred HHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcEE-cCCCCeEEEEECC-
Confidence 8887632 12467889999999888875322 556677778888888888775 2221 2345778887762
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecCCCHHHHHHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~t~~~i~~~i~~l~~~ 407 (411)
. .+..++.+.|.++||.+.+. .+.+|+++. +.+++++++++|+++
T Consensus 290 ------------~-~~~~~~~~~l~~~gi~v~~~-~~~iRis~~-~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 290 ------------K-EEKERLLEHLRTKNVAVRSF-REGVRITIG-KREENDMILRELEVF 334 (335)
T ss_dssp ------------T-HHHHHHHHHHHHHTEEEEEE-TTEEEEECC-CHHHHHHHHHHHHCC
T ss_pred ------------C-CCHHHHHHHHHHCCEEEEEC-CCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 1 23467888999999999983 456899875 467899999998754
No 120
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.95 E-value=1.8e-26 Score=217.90 Aligned_cols=319 Identities=14% Similarity=0.091 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 52 HADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
..+|.+++++.+.+.. ..+ ...+...++.+++++.++ .++++++|+||++|+..+++.+ ..+++.|++.+++|+
T Consensus 19 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~--~~~gd~Vl~~~~~~~ 94 (392)
T 2z9v_A 19 NAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL--ISPDDVVLNLASGVY 94 (392)
T ss_dssp CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH--CCTTCCEEEEESSHH
T ss_pred CCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh--cCCCCEEEEecCCcc
Confidence 4788899888776654 111 123346788889998887 5689999999999999999864 456678999999998
Q ss_pred CCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.... .....|..+..++.... +. .|++++++.+++. +++++|+++++++++|.+.+ +++
T Consensus 95 ~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~ 155 (392)
T 2z9v_A 95 GKGFGYWAKRYSPHLLEIEVPYN-EA-------------IDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP----IDA 155 (392)
T ss_dssp HHHHHHHHHHHCSCEEEEECCTT-SC-------------CCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC----HHH
T ss_pred cHHHHHHHHHcCCceEEeeCCCC-CC-------------CCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc----HHH
Confidence 75211 11224554444333211 11 1899999999742 35678888888888898888 999
Q ss_pred HHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC--C--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--P-------- 277 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~--~-------- 277 (411)
|.++|++||+++|+||+|+ + |. ......++.+.-+.|+||+++++..+|++++++++++.+.... +
T Consensus 156 i~~l~~~~~~~li~D~a~~-~--g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 232 (392)
T 2z9v_A 156 IGALVSAHGAYLIVDAVSS-F--GGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIV 232 (392)
T ss_dssp HHHHHHHTTCEEEEECTTT-B--TTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSG
T ss_pred HHHHHHHcCCeEEEEcccc-c--CCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHH
Confidence 9999999999999999996 2 11 1112222322223478898876545699999999887775311 0
Q ss_pred -------cccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce-EE-eeecceEEEEE
Q 015230 278 -------MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI-CG-GYISGMFGFFF 345 (411)
Q Consensus 278 -------~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~g~~~~~~~ 345 (411)
.......+.+..+++++.++++.+.+ ++++++++++.+++++.|+++ ...... .. ...+.++++.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~ 310 (392)
T 2z9v_A 233 DWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GLSVWAASDSIASPTTTAVRT 310 (392)
T ss_dssp GGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSGGGBCTTEEEEEC
T ss_pred HHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CCeeccCCccccCCceEEEEC
Confidence 00112345567777777777776543 456777888888888888775 222211 00 11466777776
Q ss_pred ecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 346 TEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.. ..+..++.+.|.++ ||.+.++. .+.+|+++ .+|++++++++++|+++++++
T Consensus 311 ~~-------------~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 311 PD-------------GVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp CT-------------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred CC-------------CCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 31 11236788999988 99998864 34578874 579999999999999988753
No 121
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.95 E-value=3.8e-27 Score=224.69 Aligned_cols=336 Identities=12% Similarity=0.047 Sum_probs=216.3
Q ss_pred EEeccCCccccc-cCCCcHHHHHHHHHHH--HcC-CCCCCCCHH-HHHHHHHHHhhCC-CCCEEEEeCChHHHH--HHHH
Q 015230 38 YIDYVGSWGPAI-IGHADDQVLAALGETM--KKG-TSFGAPCLL-ENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVL 109 (411)
Q Consensus 38 ~~d~~~~~~~~~-~g~~~~~v~~a~~~~l--~~~-~~~~~~~~~-~~~l~~~l~~~~~-~~~~v~~~~~g~~a~--~~al 109 (411)
++||..+..... ++ .++.+++++.+.+ ... ....|+... ..++.+.+++.++ .+++|++|+|+++++ ..++
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~ 112 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLIS 112 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHH
Confidence 689888842100 22 4556777776552 121 122232211 2344444444445 678999999999997 4555
Q ss_pred HHHHhc--cC--------CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHc
Q 015230 110 RLARAF--TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179 (411)
Q Consensus 110 ~~~~~~--~~--------~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 179 (411)
+....- .+ ++.|++.+++|++....+ ...|..+..++... .++ |++++++.++.
T Consensus 113 ~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g~--------------d~~~l~~~l~~ 176 (422)
T 3d6k_A 113 WSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT-EHFGFEMINVPMTD-EGP--------------DMGVVRELVKD 176 (422)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TEE--------------CHHHHHHHHTS
T ss_pred HHhcCcccccccccccCCCCEEEEeCCccHHHHHHH-HHcCCEEEecCCCC-CCC--------------CHHHHHHHHhc
Confidence 543221 01 236999999999765433 33444333332211 111 89999999873
Q ss_pred CCCcEEEEEEcc-cCCCCCccCCCHHHHHHHHHHHH-HhCCEEEEeccccc--c-cccc-Cccc-------cccCCCcch
Q 015230 180 NKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTG--F-RLAY-GGAQ-------EYFGVTPDL 246 (411)
Q Consensus 180 ~~~~~~~vi~~~-~~~~~G~~~~~~~~l~~i~~l~~-~~~~~li~De~~~g--~-~~g~-~~~~-------~~~~~~~d~ 246 (411)
.++++|++.| .+|++|.+. +.+++++|.++|+ +||++||+||+|+. | ..+. .... +..+....+
T Consensus 177 --~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (422)
T 3d6k_A 177 --PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFM 253 (422)
T ss_dssp --TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEE
T ss_pred --CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEE
Confidence 2577877555 455566654 5666999999999 99999999999974 5 3332 1111 123445567
Q ss_pred hhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH---hc--CChHHHHHHHHHHHHHHH
Q 015230 247 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL---KE--PGTYEYLNKITGELTQGI 321 (411)
Q Consensus 247 ~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~---~~--~~~~~~~~~~~~~~~~~l 321 (411)
.||||...+|+|+||+++++++++.+.. .....+++.++++++++.++++.. .+ +++++.++++.+++.+.|
T Consensus 254 ~S~SK~~~~GlriG~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (422)
T 3d6k_A 254 SSTSKITHAGSGVSFFASSKENIEWYAS---HANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEIL 330 (422)
T ss_dssp EESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcCcccceEEEEeCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999995579999999999999888763 223345678899999888877531 11 344556666777777777
Q ss_pred HHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceeeec
Q 015230 322 IDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL 390 (411)
Q Consensus 322 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~~ 390 (411)
++.....+... .....|+++|+++... +...+.+.|.++||.+.+++ .+.+|+++
T Consensus 331 ~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 331 DSRLSEYGVAKWTSPTGGYFISVDVVPG--------------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHGGGTCEEECCCSBSSCEEEEESTT--------------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHhcCcCCceEEeCCCcceEEEEECCCC--------------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 76544434322 2234688899988431 12567888999999999942 23578887
Q ss_pred C-CCHHHHHHHHHHHHHHHHh
Q 015230 391 A-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~-~t~~~i~~~i~~l~~~~~~ 410 (411)
. .+++++++++++|++++++
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 7 6999999999999998765
No 122
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=5.2e-26 Score=216.44 Aligned_cols=322 Identities=13% Similarity=0.063 Sum_probs=222.5
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--------CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
+|..|+|+.+. ++.++++.+++.++++...... ...+...++.+++++.++ .++++++|+|++++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46778886543 3578899999999998632111 113556789999999997 56899999999999
Q ss_pred HHHHHHHHHhc----cCCcEEEEEeCCcCCCchhhhh-h---c--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 105 CMGVLRLARAF----TGRERIIKFEGCYHGHADPFLV-K---A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 105 ~~~al~~~~~~----~~~~~vi~~~~~~~~~~~~~~~-~---~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
++.+++.+... .+++++|+.++.+|+.....+. . . |. .+..++. +++++
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~--~~~l~ 159 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-------------------TLRLVDS--PEELP 159 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-------------------EEEEESS--GGGHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-------------------eEEEeCc--HHHHH
Confidence 99998865433 4555677777777764333221 1 1 22 2333333 56777
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhh
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGK 251 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK 251 (411)
+.++ +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ + |. ......++ +|++ +++|
T Consensus 160 ~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~--g~~~~~~~~~~--~d~~~~s~~K 227 (416)
T 1qz9_A 160 QAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-A--GAVPVDLHQAG--ADYAIGCTYK 227 (416)
T ss_dssp HHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-T--TTSCCCHHHHT--CSEEEECSSS
T ss_pred HHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-c--cCcCCChhhcC--CCEEEecCcc
Confidence 7775 36889999999999999988 9999999999999999999997 2 21 11122223 4554 5679
Q ss_pred hccCCccc-ccccccHHHHHHhcCCCCcc--------------------cccCCCCCHHHHHHHHHHHHHHhc---CChH
Q 015230 252 IIGGGLPV-GAYGGRRDIMEMVAPAGPMY--------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTY 307 (411)
Q Consensus 252 ~~~~G~~~-g~~~~~~~~~~~~~~~~~~~--------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~ 307 (411)
++++|.++ |++++++++++.+.+....+ .....+.++.+++++.++++.+.. ++++
T Consensus 228 ~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 307 (416)
T 1qz9_A 228 YLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLR 307 (416)
T ss_dssp TTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99878787 99999988877665421111 111235677888888888887754 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEe----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 383 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~ 383 (411)
++++++.+++.+.|+++....++..... ..+.++++.+. + ...+.+.|.++||.+.....
T Consensus 308 ~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------~---~~~l~~~l~~~gi~~~~~~~ 371 (416)
T 1qz9_A 308 RKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------E---GYAVIQALIDRGVIGDYREP 371 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-------------T---HHHHHHHHHTTTEECEEETT
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-------------C---HHHHHHHHHhCCcEeccCCC
Confidence 7888888888888877522001211111 13567777662 1 26788999999999876555
Q ss_pred cceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 384 EAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 ~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+|+++ .+|++++++++++|++++++
T Consensus 372 ~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 372 RIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 6788865 46999999999999998865
No 123
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=8.3e-27 Score=219.96 Aligned_cols=317 Identities=14% Similarity=0.123 Sum_probs=217.9
Q ss_pred cCCCcHHHHHHHHHHHHcCC---CC---CCCC--HHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 50 IGHADDQVLAALGETMKKGT---SF---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 50 ~g~~~~~v~~a~~~~l~~~~---~~---~~~~--~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.|+.++++++++.+.++... .+ .|+. ....++.+.+++.++ ..+++++|+||++|+..+++.++ ..+++.
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd~ 103 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGDE 103 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTCE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCCE
Confidence 56678899999999887632 11 1222 556788999999887 56799999999999999998532 356789
Q ss_pred EEEEeCCcCCCchhh---hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 121 IIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 121 vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
|++..++|++..... ....|..+..++....... ..|++++++.++ +++++|+++++++++|
T Consensus 104 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~---~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 104 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLG---PKTRLVILSHLLWNTG 168 (390)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCC---TTEEEEEEESBCTTTC
T ss_pred EEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcC---CCceEEEEeccccCCc
Confidence 999999999765432 2233544444332210111 017888887775 3688899999888899
Q ss_pred ccCCCHHHHHHHHHHHH----HhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHH
Q 015230 198 FIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~----~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
.+.+ +++|.++|+ +||+++|+||+|+ + |.. ..+.....+|++ |++|++.+|.++|++++++++++.
T Consensus 169 ~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~--g~~-~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~ 240 (390)
T 1elu_A 169 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-A--GSL-PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGE 240 (390)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-B--TTB-CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGG
T ss_pred eecC----HHHHHHHHhhhhhhcCcEEEEEcccc-c--CCc-CCChhhcCCCEEEccccccccCCCceEEEEECHHhHhh
Confidence 9988 999999999 9999999999997 2 211 111112345654 599977777789999999888877
Q ss_pred hcCCCCc-------------------ccccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 272 VAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 272 ~~~~~~~-------------------~~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+...... ......+.++++++++.++++.+.+ ++++++++++.+++.+.|+++
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 316 (390)
T 1elu_A 241 INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL---- 316 (390)
T ss_dssp CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc----
Confidence 7642110 0112345677777777777776654 335566777777777777654
Q ss_pred CCceEE---eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceeee--cCCCHHHHHHHHH
Q 015230 329 GHAICG---GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS--LAHSSDDIQHTIT 402 (411)
Q Consensus 329 ~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~--~~~t~~~i~~~i~ 402 (411)
+..... .+.|.++.+++... .+..++.+.|.++||.+.++. .+.+|++ ...++++++++++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~ 383 (390)
T 1elu_A 317 PHVHCLATSAPQAGLVSFTVDSP-------------LGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLA 383 (390)
T ss_dssp TTEEESCSSCCSSSEEEEEECSS-------------SCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEecCccccccEEEEEcCCC-------------CCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHH
Confidence 221111 24577777777311 113678889999999999875 4568886 4689999999999
Q ss_pred HHHHH
Q 015230 403 AAEKV 407 (411)
Q Consensus 403 ~l~~~ 407 (411)
+|+++
T Consensus 384 ~l~~~ 388 (390)
T 1elu_A 384 RLADF 388 (390)
T ss_dssp HHTTC
T ss_pred HHHhh
Confidence 98753
No 124
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.94 E-value=7e-27 Score=220.63 Aligned_cols=318 Identities=11% Similarity=0.049 Sum_probs=214.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC-CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 130 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~ 130 (411)
.+|++++++.+.+... .+....+...++.+++++.++ .. +++++|+||++|++.+++.+ ..+++.|++..++|++
T Consensus 34 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~~~ 110 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIGH-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGIWG 110 (393)
T ss_dssp CCHHHHHHTTCCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSHHH
T ss_pred CCHHHHHHhcccccCc-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCchh
Confidence 6788887776533211 111123556788889988887 33 36999999999999999864 5577889998888864
Q ss_pred Cc-hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHH
Q 015230 131 HA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209 (411)
Q Consensus 131 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i 209 (411)
.. .......|..+..++...... .|++++++.++.. ++++|+++++++++|.+.+ +++|
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~~~~--------------~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i 170 (393)
T 3kgw_A 111 MRAAEIADRIGARVHQMIKKPGEH--------------YTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGF 170 (393)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTCC--------------CCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTH
T ss_pred HHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHHH
Confidence 32 222334454444433321111 1899999999852 5678888888888898888 8999
Q ss_pred HHHHHHhCCEEEEecccc-ccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcc---------
Q 015230 210 RRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY--------- 279 (411)
Q Consensus 210 ~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~--------- 279 (411)
.++|++||++||+||+|+ |. ..+..+.++.+..+.+++|+++++.++|++++++++++.+.......
T Consensus 171 ~~l~~~~~~~li~De~~~~g~---~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
T 3kgw_A 171 GELCHRYQCLLLVDSVASLGG---VPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITY 247 (393)
T ss_dssp HHHHHHTTCEEEEECTTTTTT---SCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHH
T ss_pred HHHHHHcCCEEEEECCccccC---cccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHH
Confidence 999999999999999997 21 11222233333334466799987666999999999988876422111
Q ss_pred -----------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce-E-EeeecceEEE
Q 015230 280 -----------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI-C-GGYISGMFGF 343 (411)
Q Consensus 280 -----------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~g~~~~~ 343 (411)
...+.+.++.+++++.++++.+.+ ++++++++++.+++.+.|+++. ..... . ....+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~ 325 (393)
T 3kgw_A 248 LAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG--LKFFVKDPEIRLPTITTV 325 (393)
T ss_dssp HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBSSSSGGGBCSSEEEE
T ss_pred HHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CeeccCChhhcCCeEEEE
Confidence 112345677888888788876554 5667788888888888887762 11110 0 1122456667
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+.. ..+..++.+.|.++ ||.+.++. .+.+|+++ .+|++++++++++|+++++++
T Consensus 326 ~~~~-------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 326 TVPA-------------GYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp ECCT-------------TBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred eCCC-------------CCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 6632 11236788899888 99999864 34578764 359999999999999998763
No 125
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.94 E-value=2.8e-26 Score=216.62 Aligned_cols=315 Identities=15% Similarity=0.123 Sum_probs=217.7
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 51 GHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
++.+|++++++.+.+.. .++. ..+..+++++++++.++ .++ ++++|+||++|+..+++.+ ..+++.|++.+++
T Consensus 43 ~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~--~~~gd~Vl~~~~~ 118 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA--VEPGDVVLIGVAG 118 (393)
T ss_dssp CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESS
T ss_pred CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc--cCCCCEEEEEcCC
Confidence 34788898888776553 2211 23567899999999887 567 8999999999999999864 4567889999999
Q ss_pred cCCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 128 YHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 128 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
|++. +.......|..+..++.+. .+ ..|++++++.+++. ++++|+++++++++|.+.+ +
T Consensus 119 ~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----l 178 (393)
T 1vjo_A 119 YFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALVHAETSTGARQP----L 178 (393)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----C
T ss_pred hhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEeccCCCcceecc----H
Confidence 9872 1222233444444433321 11 12899999999842 4567888888888898887 8
Q ss_pred HHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCC----CCccc
Q 015230 207 NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA----GPMYQ 280 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~----~~~~~ 280 (411)
++|.++|++||+++|+||+|+ + |.. ..+.....+|++ ++||+++++.++|++++++++++.+... ...+.
T Consensus 179 ~~i~~l~~~~~~~li~Dea~~-~--g~~-~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1vjo_A 179 EGVGELCREFGTLLLVDTVTS-L--GGV-PIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL 254 (393)
T ss_dssp TTHHHHHHHHTCEEEEECTTT-T--TTS-CCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred HHHHHHHHHcCCEEEEECCcc-c--cCc-CCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec
Confidence 999999999999999999997 3 111 111122345655 6779998655899999999988887421 11111
Q ss_pred ------------ccCC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee--ecceEE
Q 015230 281 ------------AGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY--ISGMFG 342 (411)
Q Consensus 281 ------------~~t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~~~ 342 (411)
..++ +.++++++++.++++.+.+ ++++++++++.+++.+.|+++ .+.... ..+ .+.+++
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~-~~~~~~~~~~~ 331 (393)
T 1vjo_A 255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--GLSLHV-EKEYRLPTLTT 331 (393)
T ss_dssp CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSS-CGGGBCSSEEE
T ss_pred CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--CCcccC-CccccCCcEEE
Confidence 1233 6788889988888887643 467788888888888888775 222211 111 234566
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeee---cCCCHHHHHHHHHHHHHHHH
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~---~~~t~~~i~~~i~~l~~~~~ 409 (411)
+.+.. ..+..++.+.|.++ ||.+.++. .+.+|++ ...+++++++++++|+++++
T Consensus 332 ~~~~~-------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~ 393 (393)
T 1vjo_A 332 VCIPD-------------GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 393 (393)
T ss_dssp EECCT-------------TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred EEcCC-------------CCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence 65521 11236788999988 99998874 3457886 45678889999999998863
No 126
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.94 E-value=2.5e-27 Score=226.39 Aligned_cols=296 Identities=11% Similarity=0.024 Sum_probs=200.7
Q ss_pred HHHHHHHHhhCC-CCCEEEEeCChHHHH--HHHHHHHHhc-c---------CCcEEEEEeCCcCCCchhhhhhcCCCCcc
Q 015230 79 NVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-T---------GRERIIKFEGCYHGHADPFLVKAGSGVAT 145 (411)
Q Consensus 79 ~~l~~~l~~~~~-~~~~v~~~~~g~~a~--~~al~~~~~~-~---------~~~~vi~~~~~~~~~~~~~~~~~g~~~~~ 145 (411)
.++.+.+++.++ .+++|++|+|+++++ +.+++..... . .++.|++.+++|++.... ....|..+..
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~-~~~~g~~~~~ 159 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI-TERFGFEMIS 159 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHH-HHHcCCEEEE
Confidence 344444444445 678999999999999 4777654221 2 168899999999865433 3344443333
Q ss_pred cCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc-CCCCCccCCCHHHHHHHHHHH-HHhCCEEEEe
Q 015230 146 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRIT-KENGALLIFD 223 (411)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~-~~~~~~li~D 223 (411)
++... .++ |++++++.++. .++++|+++|. +|++|.+.+ .+.+++|.++| ++||+++|+|
T Consensus 160 v~~~~-~g~--------------d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~-~~~~~~l~~~a~~~~~~~ii~D 221 (427)
T 3ppl_A 160 VPMNE-DGP--------------DMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVT-EDVAKRLSAMETAAPDFRVVWD 221 (427)
T ss_dssp EEEET-TEE--------------CHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCC-HHHHHHHHHCCCSSTTCEEEEE
T ss_pred eCCCC-CCC--------------CHHHHHHHHhc--CCCeEEEECCCCCCCCCccCC-HHHHHHHHHHHhhcCCCEEEEE
Confidence 32211 111 89999998852 46888888864 455676665 44499999999 9999999999
Q ss_pred cccccc-ccccC----cccc------ccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCcccccCCCCCHHHHH
Q 015230 224 EVMTGF-RLAYG----GAQE------YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 292 (411)
Q Consensus 224 e~~~g~-~~g~~----~~~~------~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a 292 (411)
|+|+++ ..+.. .... ..+....+.||||.+.+|+|+||+++++++++.+.. .....+++.+++++.
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~q~ 298 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTG---HAGIRGIGPNKVNQL 298 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH---HHHHHCSCCCHHHHH
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHH---HhhcccCCCCHHHHH
Confidence 999975 22211 1111 234445677999996689999999999999888763 223346777888888
Q ss_pred HHHHHHHH---Hhc--CChHHHHHHHHHHHHHHHHHHHHhcCCce-EEeeecceEEEEEecCCCCCcchhcccchHHHHH
Q 015230 293 AGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 366 (411)
Q Consensus 293 ~~~~~l~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (411)
++.++++. +.. ++.++.++++.+.+.+.|++.....+... .....|+++|+++... +..+
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~ 364 (427)
T 3ppl_A 299 AHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--------------TASR 364 (427)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--------------CHHH
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--------------hHHH
Confidence 88777653 111 44556666677777777766443333222 2234588999988431 1367
Q ss_pred HHHHHHHcCeEeccCC----------CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 367 FYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 367 ~~~~l~~~Gi~v~~~~----------~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
+.+.|.++||.+.+++ .+.+|+++.. +++++++++++|.+++++
T Consensus 365 ~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 365 VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL 419 (427)
T ss_dssp HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 8889999999999832 2447887665 899999999999998865
No 127
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.94 E-value=1.4e-25 Score=210.95 Aligned_cols=323 Identities=18% Similarity=0.210 Sum_probs=217.1
Q ss_pred EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---C-----CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHH
Q 015230 37 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~ 107 (411)
.|+|+.++ ++.+|++++++.++++...... + ......++.+++++.++ .++++++|+||++|+..
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 45665554 3589999999999998631111 1 12345778888888887 56799999999999999
Q ss_pred HHHHHHh--ccCCcEEEEEeCCcCCCchhhh--hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 108 VLRLARA--FTGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 108 al~~~~~--~~~~~~vi~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+++.+.. ..+++.|++.+++|++...... ...|..+..++... .+. .|++++++.++ ++
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~---~~ 139 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RGV-------------VKLEELEKLVD---ED 139 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TSC-------------BCHHHHHHHCC---TT
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CCc-------------cCHHHHHHHhC---CC
Confidence 9986532 1466889999999887544442 23344444433221 111 18999998886 36
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC--CEEEEecccccc-ccccCccccccCCCcchh--hhhhhccC-Cc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GL 257 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~--~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~ 257 (411)
+++|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ + .. ...... ..+|++ ++||.++. |
T Consensus 140 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~~--~~~di~~~s~sK~~g~~G- 209 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLEK--LEVDYASFSAHKFHGPKG- 209 (384)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCTT--TCCSEEEEEGGGGTSCTT-
T ss_pred CeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCchh--cCCCEEEecHHHhcCCCc-
Confidence 888888888888999988 999999999999 9999999997 3 11 111222 235654 67798773 5
Q ss_pred ccccccccHHH--HHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 258 PVGAYGGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 258 ~~g~~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
+|++++++++ ...+..........+++.++++++++.++++.+.+ ++++++++++.+++.+.|++. ++...
T Consensus 210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 284 (384)
T 1eg5_A 210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL----GAHII 284 (384)
T ss_dssp -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT----TCEEC
T ss_pred -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC----CeEEe
Confidence 7999888765 22221100001123567788898888888887543 566677777788887777652 22111
Q ss_pred Ee---eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------------Cccee
Q 015230 334 GG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGF 387 (411)
Q Consensus 334 ~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~ 387 (411)
.. ..+.++++.+.+. +..++.+.|.++||.+.++. .+.+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLSVSFPNI--------------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEEEECTTC--------------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEEEEeCCC--------------CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 11 1245666655311 13578889999999999853 13578
Q ss_pred eecC--CCHHHHHHHHHHHHHHHHhC
Q 015230 388 TSLA--HSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 388 ~~~~--~t~~~i~~~i~~l~~~~~~~ 411 (411)
+++. +|++++++++++|+++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8765 79999999999999998764
No 128
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.94 E-value=4.4e-26 Score=216.54 Aligned_cols=317 Identities=14% Similarity=0.091 Sum_probs=215.4
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCCE-EEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEM-VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~-v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.++++++++.+.+.. .+. ...+...++.+++++.++ ..++ +++++||++|++.+++.+ ..+++.|++.+++||
T Consensus 24 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~~ 99 (411)
T 3nnk_A 24 ADPRVLRAMSSQLIG--QYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGRF 99 (411)
T ss_dssp CCHHHHHHHTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHH
T ss_pred CCHHHHHHhhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCch
Confidence 677787777654311 111 113456788888888887 4444 889999999999999864 567789999999998
Q ss_pred CC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+. ........|..+..++.+....+ |++++++.+++. ++++|+++++++++|.+.+ +++
T Consensus 100 ~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 159 (411)
T 3nnk_A 100 GHLLCEIARRCRAEVHTIEVPWGEVF--------------TPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LAE 159 (411)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTCCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCC--------------CHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HHH
Confidence 74 22233344544444333211111 899999999842 5778888888888999888 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC---Ccc------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---PMY------ 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~---~~~------ 279 (411)
|.++|++||+++|+||+|+.. ......+.++.+..+.+++|+++++.++|++++++++++.+.... +.+
T Consensus 160 i~~l~~~~~~~li~Dea~~~~--~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 237 (411)
T 3nnk_A 160 LGEICRRYDALFYTDATASLG--GNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHR 237 (411)
T ss_dssp HHHHHHHHTCEEEEECTTTBT--TBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCC
T ss_pred HHHHHHHcCCEEEEECCcccC--CcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccc
Confidence 999999999999999999621 111222333444445678899877667999999999988776432 000
Q ss_pred ------------------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 280 ------------------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 280 ------------------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
.....+.+..++++..++++.+.+ ++++++++++.+++.+.|+++. .....
T Consensus 238 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~ 315 (411)
T 3nnk_A 238 DGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG--LETFG 315 (411)
T ss_dssp CCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBCS
T ss_pred cccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeCC
Confidence 112345677788887778776554 4677788888888888888752 11111
Q ss_pred E-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHH
Q 015230 333 C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITA 403 (411)
Q Consensus 333 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~ 403 (411)
. ....+.++++.+.+ ..+..++.+.|.++ ||.+.++. ...+|+++ .+|++++++++++
T Consensus 316 ~~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~ 382 (411)
T 3nnk_A 316 DLKHKMNNVLGVVIPQ-------------GINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSA 382 (411)
T ss_dssp CGGGBCSSEEEEECCT-------------TCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred CcccccccEEEEECCC-------------CCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHH
Confidence 1 01235677776632 11236788888877 99998763 23578764 4589999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|++++++
T Consensus 383 l~~~l~~ 389 (411)
T 3nnk_A 383 LEAVLNY 389 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 129
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=2.1e-26 Score=221.00 Aligned_cols=338 Identities=11% Similarity=0.044 Sum_probs=208.1
Q ss_pred CCCE-EEeccCCccccccCC-CcHHHHHHHHHH---HH----cC-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEE
Q 015230 34 DGNE-YIDYVGSWGPAIIGH-ADDQVLAALGET---MK----KG-TSFG---APCLLENVLAEMVISAVP---SIEMVRF 97 (411)
Q Consensus 34 ~g~~-~~d~~~~~~~~~~g~-~~~~v~~a~~~~---l~----~~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~ 97 (411)
+++. ++||..+ .|+.+ .++.+.+++.++ +. .. ..|. +..++++++++++..... ..++|++
T Consensus 46 ~~~~~~i~l~~g---~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~ 122 (448)
T 3meb_A 46 DTNPKKVNLGVG---AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIAS 122 (448)
T ss_dssp CCCTTCEEESSC---CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEE
T ss_pred CCCCCeEEeecc---cccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEE
Confidence 4443 6898888 56443 444444444444 32 11 1221 234566666666621111 1589999
Q ss_pred --eCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCC-CCCCCCCCceeecCCCCHH
Q 015230 98 --VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVS 171 (411)
Q Consensus 98 --~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ 171 (411)
|+||++|+..++.+...+.+++.|++.+++|+........ ..|..+..++..+.. +... |++
T Consensus 123 ~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~------------d~e 190 (448)
T 3meb_A 123 CQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEI------------DFS 190 (448)
T ss_dssp EEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSB------------CHH
T ss_pred EECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCc------------CHH
Confidence 9999999998665444555778899999998765433331 445555554432221 1110 899
Q ss_pred HHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Ccccccc-CCCcc-
Q 015230 172 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF-GVTPD- 245 (411)
Q Consensus 172 ~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~~~-~~~~d- 245 (411)
++++.+++.+.+.+++++...+|++|...+ .+.+++|.++|++||+++|+||+|.+| ..+. ......+ +..++
T Consensus 191 ~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (448)
T 3meb_A 191 NTKKDIQSAPEKSIFLFHACAHNPSGIDFT-EAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEV 269 (448)
T ss_dssp HHHHHHHHSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCE
T ss_pred HHHHHHHhCCCCcEEEEeCCCCCCCCcCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcE
Confidence 999999865445667666666777776654 555999999999999999999999987 4331 1111111 12233
Q ss_pred --hhhhhhhcc-CCcccccc--cc---------cH----HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH------
Q 015230 246 --LTTLGKIIG-GGLPVGAY--GG---------RR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------ 301 (411)
Q Consensus 246 --~~~~sK~~~-~G~~~g~~--~~---------~~----~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~------ 301 (411)
+.|+||.++ .|+|+||+ ++ ++ ++++.+.. .....+.+.+.+++.++.++++..
T Consensus 270 i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~ 346 (448)
T 3meb_A 270 LVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL---QIRKTWSMSAIHGAYIVQVIVHDKRLLQMF 346 (448)
T ss_dssp EEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHH
T ss_pred EEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH---HHhcccCCccHHHHHHHHHHhcChHHHHHH
Confidence 558999999 69999997 54 45 55554441 112334566777777777765421
Q ss_pred -hc-CChHHHHHHHHHHHHHHHHHHHHhcC------CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH
Q 015230 302 -KE-PGTYEYLNKITGELTQGIIDAGKKAG------HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373 (411)
Q Consensus 302 -~~-~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 373 (411)
+. ++++++++++.+++.+.|+++... + +.......|++.|..+. .+.+...+.+
T Consensus 347 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~ll~~ 408 (448)
T 3meb_A 347 YDNVKEMSARIHRMRSLLHASLAKRKTP-GPGSKGTWDHILTAIGMFTFTGLT-----------------PEHVDYLKEK 408 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC-CSTTTCCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CcCcccccceeCCCceEEEecCCC-----------------HHHHHHHHHh
Confidence 11 455666777777777777664110 1 11112334666665441 1333444467
Q ss_pred cCeEeccCCCcceeeecCC-CHHHHHHHHHHHHHHHHhC
Q 015230 374 EGVYFAPSQFEAGFTSLAH-SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 374 ~Gi~v~~~~~~~~~~~~~~-t~~~i~~~i~~l~~~~~~~ 411 (411)
+||++.++. .|+++.. +++++++++++|.++++++
T Consensus 409 ~gV~v~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 409 WSIYLVKAG---GRMSMCGLTESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp HCEEECSGG---GEEEGGGCCTTTHHHHHHHHHHHHHHS
T ss_pred CCEEEeCCC---cEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 799999964 3887655 8888999999999998753
No 130
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.94 E-value=7.7e-26 Score=211.33 Aligned_cols=327 Identities=14% Similarity=0.130 Sum_probs=217.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC---CHHHHHHHHHHHhhCCC---CCEEEEeCChHHHHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRL 111 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~---~~~v~~~~~g~~a~~~al~~ 111 (411)
+++|..+ +.+ .+|++++++.+.+. +.+. .+...++.+++++.++. .+++++|+||++|+..+++.
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC----TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC----TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc----CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 4666665 333 78999998876432 1111 14456777777777762 24899999999999999985
Q ss_pred HHhccCCcEEEEEeCCcCCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 112 ARAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 112 ~~~~~~~~~vi~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
+ ..+++.|++.++.+|+. ........|..+..++.... + ..|++++++.+++.+ ++++|++.
T Consensus 76 ~--~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~l~~~~-~~~~v~~~ 138 (366)
T 1m32_A 76 A--LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEV-A-------------RPDVQAIDAILNADP-TISHIAMV 138 (366)
T ss_dssp S--CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTT-S-------------CCCHHHHHHHHHHCT-TCCEEEEE
T ss_pred h--cCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCC-C-------------CCCHHHHHHHHhcCC-CeEEEEEe
Confidence 4 24556788888777754 22333444555444333211 1 128999999998642 35566566
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~ 268 (411)
..++++|.+.+ +++|.++|++||+++|+||+|+..... .....+ .+|++ ++||+++++.++|++++++++
T Consensus 139 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~--~~~~~~--~~di~~~s~~K~~~~~~g~G~~~~~~~~ 210 (366)
T 1m32_A 139 HSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGIP--MDIAAL--HIDYLISSANKCIQGVPGFAFVIAREQK 210 (366)
T ss_dssp SEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCTTTT--TCSEEEEESSSTTCCCSSEEEEEEEHHH
T ss_pred cccCCcceecC----HHHHHHHHHHcCCEEEEECCccccCcC--cccccc--CccEEEecCcccccCCCceEEEEECHHH
Confidence 66667888888 999999999999999999999722111 111122 35554 789999765567999999998
Q ss_pred HHHhcCCCCccc---------------ccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 269 MEMVAPAGPMYQ---------------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 269 ~~~~~~~~~~~~---------------~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
++.+......+. ...++.++.+++++.++++.+.+ ++++++++++.+++.+.|+++ .+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~ 288 (366)
T 1m32_A 211 LAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFN 288 (366)
T ss_dssp HTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred HHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCe
Confidence 887754211110 01357788888888888876643 346777888888888888775 222
Q ss_pred CceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---Ccceeeec--CCCHHHHHHHHHH
Q 015230 330 HAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSL--AHSSDDIQHTITA 403 (411)
Q Consensus 330 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~~~~~~--~~t~~~i~~~i~~ 403 (411)
..... ...|+++++.+.... ..+..++.+.|.++||.+.++. .+.+|+++ .+|++++++++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 357 (366)
T 1m32_A 289 TLLDDELHSPIITAFYSPEDP-----------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTA 357 (366)
T ss_dssp BSSCGGGBCSSEEEEECCCCT-----------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHH
T ss_pred eccCchhcCceEEEEEcCccC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHH
Confidence 21110 124668888874200 1123678999999999998874 34578754 4689999999999
Q ss_pred HHHHHHhC
Q 015230 404 AEKVLRQI 411 (411)
Q Consensus 404 l~~~~~~~ 411 (411)
|+++++++
T Consensus 358 l~~~~~~~ 365 (366)
T 1m32_A 358 IRTAMYWT 365 (366)
T ss_dssp HHHHCTTC
T ss_pred HHHHHHhc
Confidence 99987653
No 131
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=1.4e-25 Score=213.48 Aligned_cols=297 Identities=13% Similarity=0.048 Sum_probs=202.3
Q ss_pred CHHHHHHHHHHHhhCC-CCCEEE-EeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc-hhhhhhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~~~v~-~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 151 (411)
.+...++.+++++.++ ..+.++ +++||++|+..+++.+ ..+++.|++.+++||+.. .......|..+..++....
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 120 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG 120 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCC
Confidence 4457889999999998 556555 8999999999999854 567789999999998732 2233344554444333211
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~ 231 (411)
..+ |++++++.+++. ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .
T Consensus 121 ~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~---~ 177 (416)
T 3isl_A 121 TVF--------------DPEDIIREIKKV--KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT---I 177 (416)
T ss_dssp CCC--------------CHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT---T
T ss_pred CCC--------------CHHHHHHHHhhC--CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc---c
Confidence 111 899999999742 4678888888888998888 9999999999999999999996 1
Q ss_pred cc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCC----------------------------------
Q 015230 232 AY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---------------------------------- 276 (411)
Q Consensus 232 g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~---------------------------------- 276 (411)
|. ....+.++.+..+.+++|++.++.++|++++++++++.+.+.+
T Consensus 178 ~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~ 257 (416)
T 3isl_A 178 GGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDY 257 (416)
T ss_dssp TTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHH
T ss_pred cCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhh
Confidence 11 1112223333334577899887667899999999888776321
Q ss_pred -CcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCCC
Q 015230 277 -PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVY 351 (411)
Q Consensus 277 -~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 351 (411)
........+.+..++++..++++.+.. ++++++++++.+++.+.|+++. +...... ...+.++++.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~~---- 331 (416)
T 3isl_A 258 WSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMG--LRLFGDDSCKMPVVTCVEIPG---- 331 (416)
T ss_dssp TSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBCSCGGGBCTTEEEEECCT----
T ss_pred hcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeccCccccCCcEEEEeCCC----
Confidence 001112335577777777777776544 4677788888888888888741 1111110 1125677777632
Q ss_pred CcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec--CCCHHH-HHHHHHHHHHHHHhC
Q 015230 352 NFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDD-IQHTITAAEKVLRQI 411 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~--~~t~~~-i~~~i~~l~~~~~~~ 411 (411)
..+..++.+.|.++ ||.+.++. .+.+|+++ ..++++ +++++++|+++++++
T Consensus 332 ---------~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 332 ---------GIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp ---------TCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 11236788999887 99999753 34578864 234455 999999999988753
No 132
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1.7e-24 Score=205.24 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=216.1
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCC---CC-----CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHH
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GA-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 105 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~---~~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~ 105 (411)
+..|+|+.++ . ..+|++++++.+.++..... .+ ..+...++.+++++.++ .++++++|+|+++++
T Consensus 26 ~~~~ld~~~~---~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAG---M---LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGC---C---CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCc---C---CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 4677776665 2 47899999999999873211 12 13456788888888887 567999999999999
Q ss_pred HHHHHHHH-hccCCcEEEEEeCCcCCCchhhhhh---cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 106 MGVLRLAR-AFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 106 ~~al~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
..+++... ...+++.|++..++|++........ .|..+..++.....+.. |++++++.++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~-------------d~~~l~~~l~--- 163 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGEL-------------PTWQWESLIS--- 163 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCC-------------CGGGHHHHCC---
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCc-------------CHHHHHHHhC---
Confidence 99887431 2456788999999998765554432 35544443332111111 7888888886
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC-ccccccCCCcchhhhhhhccCCcccc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVG 260 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~-~~~~~~~~~~d~~~~sK~~~~G~~~g 260 (411)
+++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ .|.. .....++.+.-+.|++|.++++ +|
T Consensus 164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~---~g~~~~~~~~~~~d~~~~s~~K~~g~~--~G 234 (406)
T 3cai_A 164 KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA---APYRLLDIRETDADVVTVNAHAWGGPP--IG 234 (406)
T ss_dssp TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT---TTTCCCCHHHHCCSEEEEEGGGGTSCS--CE
T ss_pred CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc---cCCCCCCchhcCCCEEEeehhhhcCCC--cC
Confidence 36889999998999999988 9999999999999999999997 2211 1222334333345789987643 89
Q ss_pred -cccccHHHHHHhcCCCCcc------cccCCCCCHHHHHHHHHHHHHHhc-----------------CChHHHHHHHHHH
Q 015230 261 -AYGGRRDIMEMVAPAGPMY------QAGTLSGNPLAMTAGIHTLKRLKE-----------------PGTYEYLNKITGE 316 (411)
Q Consensus 261 -~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~a~~~~~l~~~~~-----------------~~~~~~~~~~~~~ 316 (411)
++++++++++.+.+....+ .....+.++.+++++.++++.+.. ++++++++++.++
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (406)
T 3cai_A 235 AMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDY 314 (406)
T ss_dssp EEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999888776432110 011345677777777777776653 2344555555666
Q ss_pred HHHHHHHHHHhcCCceEEe---eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------
Q 015230 317 LTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------- 382 (411)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------- 382 (411)
+.+.|+++ +...... ..+.++++.+.+. +..++.+.|.++||.+.++.
T Consensus 315 l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~ 376 (406)
T 3cai_A 315 LMVSLRSL----PLVMLIGRPEAQIPVVSFAVHKV--------------PADRVVQRLADNGILAIANTGSRVLDVLGVN 376 (406)
T ss_dssp HHHHHHTC----TTEEECCCCSSBCSEEEEEETTB--------------CHHHHHHHHHHTTEECEECCSCHHHHHHTTT
T ss_pred HHHHHhcC----CCeEEcCCccccCCEEEEEECCc--------------CHHHHHHHHHHCCcEEecCChHHHHHHcCCC
Confidence 66665542 2221111 1244677766311 13678889999999998764
Q ss_pred --CcceeeecC--CCHHHHHHHHHHHHH
Q 015230 383 --FEAGFTSLA--HSSDDIQHTITAAEK 406 (411)
Q Consensus 383 --~~~~~~~~~--~t~~~i~~~i~~l~~ 406 (411)
...+|+++. +|++++++++++|++
T Consensus 377 ~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 377 DVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 245788644 589999999999875
No 133
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.94 E-value=4e-26 Score=214.72 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=214.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC--CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|++++++.+.+.... .....+...++.+++++.++ .. +++++|+||++|+. +++. ...+++.|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~--~~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS--LLKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG--GCCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh--hcCCCCEEEEecCCcc
Confidence 67888888766554311 11124566788888988887 44 88999999999999 8864 2456788999999998
Q ss_pred CCchhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+...... ...|..+..++......+ |++++++.++++ ++++|+++++++++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPGDYV--------------KPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTTCCC--------------CHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCCCCC--------------CHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 7422221 233444444333221111 899999999853 5888999988899999988 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHh-cCCCC---------c
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMV-APAGP---------M 278 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~-~~~~~---------~ 278 (411)
|.++|++||+++|+||+|+... .......++.+..+.+++|+++++.++|++++++++++.+ .+... .
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNW 226 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHH
T ss_pred HHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHH
Confidence 9999999999999999997210 1111222233333447789998766699999999988777 21100 0
Q ss_pred -----c----cccCC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceE--EeeecceEEE
Q 015230 279 -----Y----QAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGF 343 (411)
Q Consensus 279 -----~----~~~t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~ 343 (411)
. ....+ +.+..++++..++++.+.. ++++++++++.+++.+.|+++ .+..... ....+.++++
T Consensus 227 ~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~ 304 (384)
T 3zrp_A 227 LPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVTGV 304 (384)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEEEE
T ss_pred HHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEEEE
Confidence 0 11122 4566677777677776544 467788888888888888876 2221111 0123667777
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.. .+..++.+.|.++||.+.++.. +.+|++ ..+|++++++++++|++++++
T Consensus 305 ~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 305 ILKV--------------ADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp ECSS--------------SCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCC--------------CCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 7632 1236889999999999998752 457775 447999999999999998875
No 134
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.94 E-value=8.2e-27 Score=227.96 Aligned_cols=344 Identities=12% Similarity=0.019 Sum_probs=208.6
Q ss_pred ccccccCCCcHHHHHHHHHHHHcCC---CCCCCCHHHHHHHHHHHhh----CC--CCCEEEEeCChHHHHHHHHHHHH--
Q 015230 45 WGPAIIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISA----VP--SIEMVRFVNSGTEACMGVLRLAR-- 113 (411)
Q Consensus 45 ~~~~~~g~~~~~v~~a~~~~l~~~~---~~~~~~~~~~~l~~~l~~~----~~--~~~~v~~~~~g~~a~~~al~~~~-- 113 (411)
++.+..++.+|++++++.+++.... ...+..++++.+++++.+. .. ..+++++|+|+++|+..+++...
T Consensus 108 l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 108 YCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhh
Confidence 3334556678899888888887521 1224467888999998666 22 24799999999999999997421
Q ss_pred -hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 114 -AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 114 -~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
...+++.|++..++|++..... ...|.++..++... .... .+ |++++++.++ .++++|+++
T Consensus 188 ~l~~~gd~Viv~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~---------~~---d~~~l~~~l~---~~~k~v~l~ 251 (533)
T 3f6t_A 188 HLLKKGDKIAINEPIFTPYLRIP-ELKDYELVEVDLHSYEKNDW---------EI---EPNEIEKLKD---PSIKALIVV 251 (533)
T ss_dssp TSSCTTCEEEEESSCCHHHHTSG-GGGGSEEEEECCCEETTTTS---------EE---CHHHHHHHSC---TTEEEEEEE
T ss_pred hccCCcCEEEEcCCCcHHHHHHH-HHcCCeEEEEEecCCcccCC---------CC---CHHHHHHHhC---CCCeEEEEe
Confidence 1345678999999988644333 33344333333221 1111 01 7899998875 357777765
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHH-HhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhcc-CCcccccccccHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 267 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~-~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~ 267 (411)
.++|++|.+.+ .+.+++|+++|+ +||+++|+||+|.+| ..+........+....+.||||.++ .|+|+||++++++
T Consensus 252 ~p~NPtG~~~~-~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 252 NPTNPTSKEFD-TNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEK 330 (533)
T ss_dssp SSCTTTCBCCC-HHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESS
T ss_pred CCCCCCccccC-HHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcH
Confidence 55666776654 445999999999 589999999999988 4332221111223355679999998 7999999988766
Q ss_pred -----HHHHhcC-----------------------------CCCcccccCCCCCHHHHHHHH-HHHHHHh-------c--
Q 015230 268 -----IMEMVAP-----------------------------AGPMYQAGTLSGNPLAMTAGI-HTLKRLK-------E-- 303 (411)
Q Consensus 268 -----~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~a~~~-~~l~~~~-------~-- 303 (411)
+++.+.+ ........+.+.+++++.++. .++..+. .
T Consensus 331 ~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~ 410 (533)
T 3f6t_A 331 NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDP 410 (533)
T ss_dssp CHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCH
T ss_pred HHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHH
Confidence 4433210 001122335566666666622 1223232 1
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcch----hcccchHHHHHHHHHHHHcCeE
Q 015230 304 --PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFED----AKKSETTKFARFYRGMLEEGVY 377 (411)
Q Consensus 304 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gi~ 377 (411)
+++++.++++.+++.+.|. .++.......|+++|+++.......... .........+.+.+.+.++||.
T Consensus 411 ~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~ 485 (533)
T 3f6t_A 411 YIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV 485 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence 3344445555555555553 2433333456778888774210000000 0000001123344555678999
Q ss_pred eccCC-----CcceeeecC-CCHHHHHHHHHHHHHHHHh
Q 015230 378 FAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 378 v~~~~-----~~~~~~~~~-~t~~~i~~~i~~l~~~~~~ 410 (411)
+.|+. .+.+|++++ .+++++++++++|.+++++
T Consensus 486 v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 486 LVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp SCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred EeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 99974 345899877 5999999999999998865
No 135
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.94 E-value=1.8e-25 Score=209.79 Aligned_cols=318 Identities=12% Similarity=0.046 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CC--CEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~--~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|++++++.+++... ......+..+++.+++++.++ .. +.+++|+||++|++.+++.+ ..+++.|++.+++|+
T Consensus 30 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~~~ 106 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPYF-RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGGSF 106 (376)
T ss_dssp CCHHHHHHHTSCCCCC-SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESSHH
T ss_pred CcHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCChh
Confidence 6788888876654321 011113556788888888876 32 34455899999999999864 356788999988888
Q ss_pred CCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.... .....|..+..++.+....+ |++++++.++ +++++++++++++++|.+.+ +++
T Consensus 107 ~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~ 165 (376)
T 3f0h_A 107 GHRFVQLCEIHEIPYVALKLEHGKKL--------------TKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TMM 165 (376)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTCCC--------------CHHHHHTTTT---SCCCEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHHHhhc---cCceEEEEecccCCcceecC----HHH
Confidence 74322 12233444444333221111 8888887654 46778888888888999888 999
Q ss_pred HHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc-c--------
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM-Y-------- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~-~-------- 279 (411)
|.++|++||+++|+||+|+.. +..+..+.++.+..+.+++|+++++..+|++++++++++.+...... +
T Consensus 166 i~~l~~~~~~~li~D~~~~~~--~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (376)
T 3f0h_A 166 IGEFCKKNNMFFVCDCVSAFL--ADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDAL 243 (376)
T ss_dssp HHHHHHHTTCEEEEECTTTTT--TSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHH
T ss_pred HHHHHHHcCCEEEEEcCcccc--CccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHH
Confidence 999999999999999999743 11123344555556678999998655578889999998887642111 0
Q ss_pred -----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCc
Q 015230 280 -----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNF 353 (411)
Q Consensus 280 -----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 353 (411)
....++.+..+++++.++++.+.+....+++.++.+..++.+.+.....+...... ..+.++.+.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~--~----- 316 (376)
T 3f0h_A 244 KNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP--T----- 316 (376)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE--S-----
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC--C-----
Confidence 11244556656566777777665432334444444444444444333333211111 1222322221 1
Q ss_pred chhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 354 EDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..+..++.+.|.++ ||.+.++. .+.+|++ ..+|++++++++++|++++++
T Consensus 317 -------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 317 -------TANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp -------SSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred -------CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 11236788999998 99998763 3457885 467999999999999998864
No 136
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.94 E-value=5.3e-26 Score=219.48 Aligned_cols=329 Identities=14% Similarity=0.040 Sum_probs=223.4
Q ss_pred cccCCCcHHHHHHHHHHHHcC----C-----CCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-c
Q 015230 48 AIIGHADDQVLAALGETMKKG----T-----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-T 116 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~----~-----~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-~ 116 (411)
+++|..++.+.+++.++++.. . .+....+..+++.+++++.++ .+++|++|+|+++++..+++..... .
T Consensus 74 ~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~ 153 (465)
T 3e9k_A 74 NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTP 153 (465)
T ss_dssp TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCS
T ss_pred CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccC
Confidence 456766777777777766541 1 111233555778888888887 6789999999999999999854221 2
Q ss_pred CCcEEEEEeCCcCCCchhhh---hhcCCCCcc--cC-CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 117 GRERIIKFEGCYHGHADPFL---VKAGSGVAT--LG-LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
++++|++..++||+...... ...|..+.. +. .+...... -|+++++++++++.+++++|+++
T Consensus 154 ~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~------------~d~~~l~~~i~~~~~~~~lv~~~ 221 (465)
T 3e9k_A 154 KRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET------------LRIEDILEVIEKEGDSIAVILFS 221 (465)
T ss_dssp SSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS------------CCHHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc------------cCHHHHHHHHHhcCCCeEEEEEe
Confidence 35679999999987554332 223443221 00 01111110 08999999998643478999999
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCC-cccccccccHHH
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDI 268 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G-~~~g~~~~~~~~ 268 (411)
++++++|.+.+ +++|.++|++||+++|+|++|+ .|. ......++.+..+.|++|++++| .++|++++++++
T Consensus 222 ~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~---~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~ 294 (465)
T 3e9k_A 222 GVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA---VGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKH 294 (465)
T ss_dssp SBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT---TTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGG
T ss_pred CcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh---cCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHH
Confidence 99999999998 9999999999999999999997 221 12222334433345788999644 468999888888
Q ss_pred HHHhcCCCCccccc----------------------CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 269 MEMVAPAGPMYQAG----------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 269 ~~~~~~~~~~~~~~----------------------t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
++.+.+....+.++ ..+.+.+++++..++++.+.+ ++++++.+++.+++.+.|++
T Consensus 295 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 374 (465)
T 3e9k_A 295 AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKH 374 (465)
T ss_dssp TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 77665432221111 115677888888888887654 56778888888888888877
Q ss_pred HHHh-------cCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee---e
Q 015230 324 AGKK-------AGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT---S 389 (411)
Q Consensus 324 ~~~~-------~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~---~ 389 (411)
+... .++.. +....|.++++.+.. + ..++.+.|.++||.+.....+.+|+ +
T Consensus 375 ~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-~--------------~~~l~~~L~~~Gi~v~~~~~~~iRis~~~ 439 (465)
T 3e9k_A 375 NYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-P--------------NKDVFQELEKRGVVCDKRNPNGIRVAPVP 439 (465)
T ss_dssp HCC---------CEEECSCSSGGGBCSCEEEEECC-T--------------TCCHHHHHHTTTEECEEETTTEEEEBCCT
T ss_pred hccccccccCCCCeEEeCCCCHhhcccEEEEEecC-C--------------HHHHHHHHHHCCEEEecCCCCEEEEeCcc
Confidence 5210 11111 112248888888741 1 1468889999999998766567887 3
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 015230 390 LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++++++++++|++++++
T Consensus 440 ~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 440 LYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp TTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 678999999999999998864
No 137
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.93 E-value=1.2e-25 Score=208.99 Aligned_cols=313 Identities=15% Similarity=0.107 Sum_probs=211.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+|++++++.+.+.. ..++ .+...++.+++++.++ . .+++++|+||++|+..+++. +.+ ++|++.+++
T Consensus 11 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~---~~~-d~vl~~~~~ 83 (353)
T 2yrr_A 11 IPERVQKALLRPMRG---HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLAN---LDR-GPVLVLVNG 83 (353)
T ss_dssp CCHHHHGGGGSCCCC---TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHT---CSC-CCEEEEECS
T ss_pred CCHHHHHHHhccccc---ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHH---hcC-CcEEEEcCC
Confidence 678898888777654 1222 3446888999998887 3 57899999999999999984 334 789999999
Q ss_pred cCCC-chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 128 YHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 128 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
||+. ........|..+..++.... +. .|++++++.++++ ++++|+++++++++|.+.+ +
T Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~~-~~-------------~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~ 143 (353)
T 2yrr_A 84 AFSQRVAEMAALHGLDPEVLDFPPG-EP-------------VDPEAVARALKRR--RYRMVALVHGETSTGVLNP----A 143 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTT-SC-------------CCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----H
T ss_pred CchHHHHHHHHHcCCceEEEeCCCC-CC-------------CCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----H
Confidence 9874 11122334554444333211 11 1899999999853 4667888888888898888 9
Q ss_pred HHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCCc-------
Q 015230 207 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM------- 278 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~------- 278 (411)
++|.++|++||+++|+||+|+ + ... .....++.+.-+.+++|+++++..+|++++++++++.+......
T Consensus 144 ~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~ 220 (353)
T 2yrr_A 144 EAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARV 220 (353)
T ss_dssp HHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHH
T ss_pred HHHHHHHHHcCCeEEEEcCcc-ccccc--ccccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHH
Confidence 999999999999999999995 3 221 12222333323446789887544479999999988777520000
Q ss_pred -----ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCC
Q 015230 279 -----YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 350 (411)
Q Consensus 279 -----~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 350 (411)
......+.+..+++++.++++.+.. ++++++++++.+++.+.|+++ .+.........+.++++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~--- 295 (353)
T 2yrr_A 221 AEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GFRPYPKASPLPTVLVVRPPE--- 295 (353)
T ss_dssp HHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCEESCSSSBCTTEEEEECCT---
T ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCccccCccCCCeEEEEECCC---
Confidence 0112345677777777777776543 456777888888888888764 111111101145666777631
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeEeccCC----Ccceeeec--CCCHHHHH-HHHHHHHHHHHh
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQ-HTITAAEKVLRQ 410 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~--~~t~~~i~-~~i~~l~~~~~~ 410 (411)
..+..++.+.|.++||.+.++. .+.+|+++ ..++++++ +++++|++++++
T Consensus 296 ----------~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 296 ----------GVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ----------TCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ----------CCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1123678999999999998764 34578864 46888898 999999998864
No 138
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.93 E-value=3e-26 Score=217.67 Aligned_cols=333 Identities=13% Similarity=0.092 Sum_probs=209.3
Q ss_pred CEEEeccCCccccccCC-CcHHHHHHHHHHHHcCC-CCC---CCCHHHHHHHHHHHhhCC---CCCEEE--EeCChHHHH
Q 015230 36 NEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVR--FVNSGTEAC 105 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~-~~~~v~~a~~~~l~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~--~~~~g~~a~ 105 (411)
..++||..+ .|+++ .+|.+.+++.++..... .|. +..++++.+++++..... ..+++. .+.+|++++
T Consensus 41 ~~~i~l~~g---~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 41 KRKVNLSIG---VYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SSCEECCCS---SCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred cCceeeeee---EEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 467999988 77555 67778888877743321 221 225667777777643221 156774 499999999
Q ss_pred HHHHHHHHhccC-CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 106 MGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 106 ~~al~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+.+..+++.+.+ ++.|++.+++|++. .......|..+..++.....+.. .|++++++.+++.+++.
T Consensus 118 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~~~~ 184 (409)
T 4eu1_A 118 RIGGDLLNRFVANCNRIYGPDVGYPNH-ESIFAKAGMELTPYSYYDPATKG------------LNLAGMLECLDKAPEGS 184 (409)
T ss_dssp HHHHHHGGGTSSSCCEEEEESSCCTHH-HHHHHHTTCEEEEECCEETTTTE------------ECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhH-HHHHHHcCCeEEEEEeecCcCCc------------CcHHHHHHHHHhCCCCc
Confidence 988766555544 58899988888754 33344445544443331111110 18999999998654456
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Cccc-cccCCCcch---hhhhhhcc-C
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQ-EYFGVTPDL---TTLGKIIG-G 255 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~-~~~~~~~d~---~~~sK~~~-~ 255 (411)
++++++..+|++|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+. .... ...+..+++ .||||.++ +
T Consensus 185 ~~i~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 185 VILVHACAHNPTGVDPT-HDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp EEEEESSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred EEEEECCCCCCCCCCCC-HHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 66665544566665554 455999999999999999999999988 4331 1111 112333443 48999999 7
Q ss_pred Ccccccc---cccHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHH-------hc-CChHHHHHHHHHHHHHH
Q 015230 256 GLPVGAY---GGRRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQG 320 (411)
Q Consensus 256 G~~~g~~---~~~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~-------~~-~~~~~~~~~~~~~~~~~ 320 (411)
|+|+||+ +++++ +++.+.. .....+.+.+++++.++.++++.. +. ++++++++++.+++.+.
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLAL---LIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHHH---HHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 66777 5555441 112335566788888888777632 11 55667777888888877
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeec-CCCHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSL-AHSSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~-~~t~~~i~~ 399 (411)
|+++.....+.......|+++|+.+. .+.+.+.+.++||.+.|+. |+++ ..+++++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gv~v~p~~----Ri~~~~~~~~~i~~ 399 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGLT-----------------REQVELLRSEYHIYMTLNG----RAAVSGLNSTNVEY 399 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCCC-----------------HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCCC-----------------HHHHHHHHHcCCEEEcCCC----EEEEEecCHhhHHH
Confidence 77652000021112334666664331 0233344456799999874 5543 457788999
Q ss_pred HHHHHHHHHH
Q 015230 400 TITAAEKVLR 409 (411)
Q Consensus 400 ~i~~l~~~~~ 409 (411)
++++|+++++
T Consensus 400 ~~~~l~~~l~ 409 (409)
T 4eu1_A 400 VSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 139
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.93 E-value=3.3e-26 Score=215.64 Aligned_cols=337 Identities=11% Similarity=0.032 Sum_probs=210.6
Q ss_pred CEEEeccCCccccccCC--CcHHHHHHHHHHH-HcC--CCC---CCCCHHHHHHHHHHHhhCC---CCC--EEEEeCChH
Q 015230 36 NEYIDYVGSWGPAIIGH--ADDQVLAALGETM-KKG--TSF---GAPCLLENVLAEMVISAVP---SIE--MVRFVNSGT 102 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l-~~~--~~~---~~~~~~~~~l~~~l~~~~~---~~~--~v~~~~~g~ 102 (411)
..++||..+...++-+. .++.++++.. .+ +.. ..| .+..++++++++++..... ..+ ++++|+|++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 35789888743233332 5677888766 43 332 123 3457889999999876553 234 469999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC
Q 015230 103 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 182 (411)
Q Consensus 103 ~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 182 (411)
+|+..++++...+.+ +.|++.+|+|+... ......|..+..++..+..++. + |++++++.+++.+
T Consensus 108 ~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~-~~~~~~g~~~~~v~~~~~~~~~---------~---d~~~l~~~l~~~~- 172 (405)
T 3k7y_A 108 GAIFVLLEFLKMLNV-ETLYVTNPPYINHV-NMIESRGFNLKYINFFDYNLID---------I---NYDLFLNDLRNIP- 172 (405)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEESSCCHHHH-HHHHTTTCEEEEECCEETTTTE---------E---CHHHHHHHHHHSC-
T ss_pred HHHHHHHHHHHhcCC-CEEEEeCCCCHhHH-HHHHHcCCeEEEEeccccccCC---------c---CHHHHHHHHHhCC-
Confidence 999999886544346 99999999998643 3344455544444331111110 0 8999999997532
Q ss_pred cEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Cccccc-cC---CCcchhhhhhhc
Q 015230 183 EIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FG---VTPDLTTLGKII 253 (411)
Q Consensus 183 ~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~~-~~---~~~d~~~~sK~~ 253 (411)
+.+++++++. +|++|... +++.+++|.++|++|++++|+||+|.+| ..+. ...... .. ...-+.||||.|
T Consensus 173 ~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 251 (405)
T 3k7y_A 173 NGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNM 251 (405)
T ss_dssp SSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTS
T ss_pred CCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccC
Confidence 3457777665 56677654 4566999999999999999999999988 3221 001111 11 112245899999
Q ss_pred c-CCccccccc---ccHHHHHHhcCC-CCcccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYG---GRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~---~~~~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ +|+|+||++ .++++++.+... .........+.+.++++++.++++. +.+ ++++++++++.+++.+.
T Consensus 252 ~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~ 331 (405)
T 3k7y_A 252 SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNK 331 (405)
T ss_dssp CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 899999974 366665544210 0000111223456777666666542 111 34455677777777777
Q ss_pred HH----HHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHH
Q 015230 321 II----DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSD 395 (411)
Q Consensus 321 l~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~ 395 (411)
|+ ++.....+.......|+++|+.+.. +.++.|.++||++.|++ |++++ .+++
T Consensus 332 L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------------------~~~~~L~~~gV~v~p~~----Ris~a~~~~~ 389 (405)
T 3k7y_A 332 LETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------------------KIAEHLKTHHIYIINNG----RINVSGITKN 389 (405)
T ss_dssp HHHHGGGGTCCCCGGGGSSCCSSEEECGGGG------------------GGTTTTTTTTEECCTTS----EEEGGGCCTT
T ss_pred HHhhhhhcCCCCCCccccCCceEEEecCCCH------------------HHHHHHHHCCEeecCCC----eEEEeccCHH
Confidence 76 4421000112234557777764421 22345577799999975 88775 5889
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++++++++|+++++++
T Consensus 390 ~i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 390 NVDYIADKICLSLSQI 405 (405)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998763
No 140
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=1.9e-25 Score=211.53 Aligned_cols=329 Identities=14% Similarity=0.081 Sum_probs=206.7
Q ss_pred EEEeccCCccccccCC-C----cHHHHHHHHHHHHc-C-CCCC---CCCHHHHHHHHHHHhhCC---CCCEEEE--eCCh
Q 015230 37 EYIDYVGSWGPAIIGH-A----DDQVLAALGETMKK-G-TSFG---APCLLENVLAEMVISAVP---SIEMVRF--VNSG 101 (411)
Q Consensus 37 ~~~d~~~~~~~~~~g~-~----~~~v~~a~~~~l~~-~-~~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~--~~~g 101 (411)
.++||..+ .++.+ . .+.+++++.+.+.. . ..|. +..++++++++++.+.++ .+++|++ |+||
T Consensus 29 ~~i~l~~g---~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~ 105 (401)
T 7aat_A 29 KKMNLGVG---AYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISG 105 (401)
T ss_dssp TCEECCCC---SCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred Cceeeeee---eEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcc
Confidence 36898888 44322 2 34688888777663 1 2222 335778888888877664 3789977 9999
Q ss_pred HHHHHHHHHHHHhc-cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHH
Q 015230 102 TEACMGVLRLARAF-TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFE 178 (411)
Q Consensus 102 ~~a~~~al~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 178 (411)
++|+..+++++..+ .+++.|++.+++|+... ......|..+..++... ..++ |++.+++.++
T Consensus 106 ~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~--------------d~~~l~~~l~ 170 (401)
T 7aat_A 106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT-PIFRDAGLQLQAYRYYDPKTCSL--------------DFTGAMEDIS 170 (401)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH-HHHHHTTCEEEEEECEETTTTEE--------------CHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccCCCEEEEcCCCchhHH-HHHHHcCCeeEeeeeeccccCcc--------------CHHHHHHHHH
Confidence 99999998765433 45688999999988643 33444455444433211 1111 7888888887
Q ss_pred cCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cccc---Ccccccc-CCCcc---hhhhh
Q 015230 179 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF-GVTPD---LTTLG 250 (411)
Q Consensus 179 ~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~---~~~~~~~-~~~~d---~~~~s 250 (411)
+...++++++++..+|++|...+ .+.+++|.++|++||+++|+||+|.++ ..+. ......+ +..++ +.|+|
T Consensus 171 ~~~~~~~~v~i~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~s 249 (401)
T 7aat_A 171 KIPEKSIILLHACAHNPTGVDPR-QEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYA 249 (401)
T ss_dssp TSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECT
T ss_pred hCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCC
Confidence 65456777777777777776544 455999999999999999999999877 3321 1111111 12222 46899
Q ss_pred hhcc-CCcccccccc---cHH----HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHH-------Hhc-CChHHHHHHHH
Q 015230 251 KIIG-GGLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LKE-PGTYEYLNKIT 314 (411)
Q Consensus 251 K~~~-~G~~~g~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~-------~~~-~~~~~~~~~~~ 314 (411)
|.++ +|+|+||+++ +++ +.+.+.. .....+.+.+..+++++.++++. ... ++++++++++.
T Consensus 250 K~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 326 (401)
T 7aat_A 250 KNMGLYGERAGAFTVICRDAEEAKRVESQLKI---LIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMR 326 (401)
T ss_dssp TTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCceEEEEEEeCCHHHHHHHHHHHHH---HHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7999999764 555 3333331 11122334455555555544421 111 45566777777
Q ss_pred HHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CC
Q 015230 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 393 (411)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t 393 (411)
+++.+.|+++.....+.......|+++|+.+. .+.+...+.++||.+.++ +|+++. .+
T Consensus 327 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~~----~Ris~~~~~ 385 (401)
T 7aat_A 327 TQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTKD----GRISVAGVA 385 (401)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCC
T ss_pred HHHHHHHHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccCC----CeEEeccCC
Confidence 77777776652110122122344666665441 134545557789999875 566543 56
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 394 SDDIQHTITAAEKVL 408 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~ 408 (411)
++++++++++|++++
T Consensus 386 ~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 386 SSNVGYLAHAIHQVT 400 (401)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHh
Confidence 677999999999876
No 141
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=3.4e-25 Score=206.48 Aligned_cols=324 Identities=13% Similarity=0.049 Sum_probs=204.7
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhcc
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 116 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~ 116 (411)
+++|.++ ..++.+|++++++.+++.......+..+.++++++++++.++ ..+++++|+||++|++.+++.+ ..
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~--~~ 88 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LR 88 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH--hC
Confidence 5777665 344789999999999987643334568889999999999887 6789999999999999999864 33
Q ss_pred CCcEEEEEeCCcCCCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC----CCcEEEEEEcc
Q 015230 117 GRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEP 191 (411)
Q Consensus 117 ~~~~vi~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~----~~~~~~vi~~~ 191 (411)
+++.|++.+++|++.... .....|..+..++.. ...+ |++++++.+++. ..++++|++++
T Consensus 89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~--------------d~~~l~~~l~~~~~~~~~~~~~v~~~~ 153 (359)
T 1svv_A 89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKL--------------RVADIESALHENRSEHMVIPKLVYISN 153 (359)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCC--------------CHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCee--------------cHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 567899999999876553 233445444443322 1111 799999999853 12478888877
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccC-ccccccC--CCcchh--hhhhhccCCcccccccccH
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG-GAQEYFG--VTPDLT--TLGKIIGGGLPVGAYGGRR 266 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~-~~~~~~~--~~~d~~--~~sK~~~~G~~~g~~~~~~ 266 (411)
+ +++|.+.+ .+++++|.++|++||+++|+||+|.+|..|.. ......+ ..+|++ +.+|. ++...+|+++.++
T Consensus 154 ~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~ 230 (359)
T 1svv_A 154 T-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND 230 (359)
T ss_dssp S-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG
T ss_pred C-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc
Confidence 6 45777665 57799999999999999999999965511211 1111100 123433 34554 2223356777787
Q ss_pred HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEE
Q 015230 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 343 (411)
Q Consensus 267 ~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~ 343 (411)
++++.+.... ...+.++..+....++..+. +.+ ++++++++++.+++.+.| +. . ++.......++++++
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~-~--~~~~~~~~~~~~~~~ 302 (359)
T 1svv_A 231 ALKPNARHLI-KQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EA-C--GIRLAWPSASNQLFP 302 (359)
T ss_dssp GGCTTHHHHH-HHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HH-T--TCCBSSCCSSSEECB
T ss_pred cHHHHHHHHH-hcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-cc-C--CeEEccCCccceEEE
Confidence 7765554210 00111222232222222222 322 345667777777777777 33 1 222111234556666
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccC---CCcceee--ecCCCHHHHHHHHHHHHHHHHhC
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~---~~~~~~~--~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.+. .++.+.|.++ ||.+.+. ..+.+|+ ++.++++++++++++|+++++++
T Consensus 303 ~~~------------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 303 ILE------------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp EEE------------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred EcC------------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 552 3678889998 9998432 3345788 46689999999999999987653
No 142
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.93 E-value=2.8e-25 Score=209.77 Aligned_cols=314 Identities=11% Similarity=0.069 Sum_probs=209.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.+|++++++.+++.. .+. +..+...++.+++++.++ ..+ ++++|+||++|+..+++.+ ..+++.|++.+++|+
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~ 105 (393)
T 2huf_A 30 APQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL--LEDGDVILIGHTGHW 105 (393)
T ss_dssp CCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 678888888776543 121 123556788888888887 454 8999999999999999864 446678999999998
Q ss_pred CCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+.... .....|..+..++.... + ..|++++++.++.. ++++|+++++++++|.+.+ +++
T Consensus 106 ~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 165 (393)
T 2huf_A 106 GDRSADMATRYGADVRVVKSKVG-Q-------------SLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQG----LEG 165 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred hHHHHHHHHHcCCeeEEEeCCCC-C-------------CCCHHHHHHHHhcc--CCcEEEEEccCCCccccCC----HHH
Confidence 73211 11223444444332211 1 12899999999742 4567777788888899888 899
Q ss_pred HHHHHHHhCCEEEEecccccccccc-CccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC----Ccc--
Q 015230 209 IRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~----~~~-- 279 (411)
|.++|++||+++|+||+|+ + |. ......+ .+|++ ++||+++|+..+|++++++++++.+.... +.+
T Consensus 166 i~~~~~~~~~~li~D~a~~-~--~~~~~~~~~~--~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T 2huf_A 166 VGALCHQHNCLLIVDTVAS-L--GGAPMFMDRW--EIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWD 240 (393)
T ss_dssp HHHHHHHTTCEEEEECTTT-B--TTBCCCTTTT--TCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-c--CCCCcchhhc--CccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEc
Confidence 9999999999999999996 2 11 1112222 34544 67899774333599999999988876431 111
Q ss_pred --------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceE
Q 015230 280 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMF 341 (411)
Q Consensus 280 --------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~ 341 (411)
.....+.+..+++++.++++.+.+ ++.+++++++.+++.+.|+++ .+....... ..+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~ 318 (393)
T 2huf_A 241 MSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA--GFELYADPKDRLSTVT 318 (393)
T ss_dssp HHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSSCGGGBCTTEE
T ss_pred hHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCeeccCccccCCcEE
Confidence 011124566666666667776543 456778888888888888775 222211100 124577
Q ss_pred EEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec-C--CCHHHHHHHHHHHHHHHHh
Q 015230 342 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~-~--~t~~~i~~~i~~l~~~~~~ 410 (411)
++.+.. ..+..++.+.|.++ ||.+.++. ...+|+++ . ++++++++++++|++++++
T Consensus 319 ~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 319 TIKVPQ-------------GVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp EEECCT-------------TCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC-------------CCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 776631 11135788888765 99999864 34578876 3 5789999999999998865
No 143
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.93 E-value=8.3e-25 Score=208.60 Aligned_cols=325 Identities=16% Similarity=0.111 Sum_probs=214.3
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHH--cCCCCCC---------CCHHHHHHHHHHHhhCC-CCCEEEEeCCh
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSFGA---------PCLLENVLAEMVISAVP-SIEMVRFVNSG 101 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~--~~~~~~~---------~~~~~~~l~~~l~~~~~-~~~~v~~~~~g 101 (411)
++..|+|+.++ +..+|++++++.+++. ....... ..+...++.+++++.++ .++++++|+||
T Consensus 21 ~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg 94 (423)
T 3lvm_A 21 KLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGA 94 (423)
T ss_dssp CSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSH
T ss_pred CCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCh
Confidence 44567776554 3478999999999887 3211111 13455788888888887 66799999999
Q ss_pred HHHHHHHHHHHHh-cc-CCcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 102 TEACMGVLRLARA-FT-GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 102 ~~a~~~al~~~~~-~~-~~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
++|++.+++.+.. +. +++.|++..++|++.......+ .|..+..++......+ |++++++.+
T Consensus 95 t~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i 160 (423)
T 3lvm_A 95 TESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGII--------------DLKELEAAM 160 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCC--------------CHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCcc--------------CHHHHHHhc
Confidence 9999999985532 23 4788999989998755444332 2443433332221111 899999888
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~ 255 (411)
+ +++++|+++++++++|.+.+ +++|.++|++||++||+||+|+. +.. ..+.....+|++ ++||.+++
T Consensus 161 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~---~~~-~~~~~~~~~di~~~s~sK~~g~ 229 (423)
T 3lvm_A 161 R---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV---GKL-PIDLSQLKVDLMSFSGHKIYGP 229 (423)
T ss_dssp C---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT---TTS-CCCTTTSCCSEEEEESTTTTSC
T ss_pred C---CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc---CCC-CcChhhcCCCEEEechHHhcCC
Confidence 6 36889999999999999988 99999999999999999999972 211 111222345655 56796653
Q ss_pred CcccccccccHHHHHHhcCCCCc----ccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
..+|+++++++..+.+.+.... ....+.+.++.+++++.++++.+.. ++++++++++.+++++.|+++ +
T Consensus 230 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~ 304 (423)
T 3lvm_A 230 -KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI----E 304 (423)
T ss_dssp -SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----T
T ss_pred -CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Confidence 2389998887766555432110 0122445677777777777776654 555666666666666666543 3
Q ss_pred CceEEeee----cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------------------
Q 015230 330 HAICGGYI----SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------- 383 (411)
Q Consensus 330 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------- 383 (411)
........ +.++.+.+... +...+.+.|.+ |.+.++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 368 (423)
T 3lvm_A 305 EVYLNGDLEHGAPNILNVSFNYV--------------EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELA 368 (423)
T ss_dssp TEEEESCSTTBCTTEEEEEETTS--------------CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHH
T ss_pred CEEEeCCccccCCCeEEEEeCCC--------------CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCcccc
Confidence 32222222 35666665211 12567777766 88877632
Q ss_pred -cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 384 -EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 -~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|++ ..+|++++++++++|++++++
T Consensus 369 ~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 369 HSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 446775 456999999999999998865
No 144
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.93 E-value=5.9e-25 Score=213.50 Aligned_cols=335 Identities=12% Similarity=0.059 Sum_probs=210.2
Q ss_pred CcHHHHHHHHHHHHcC---C--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCChHHHHHHHHHHHHhccCCcEE
Q 015230 53 ADDQVLAALGETMKKG---T--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGRERI 121 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~---~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~~a~~~al~~~~~~~~~~~v 121 (411)
.++++++++.+.+... . .|. +..++++++++++.+..+ .+++|++|+|+++++..+++.. ...+++.|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~V 185 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL-IRNEKDGI 185 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH-CCSTTEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH-cCCCCCEE
Confidence 4556777777777763 1 122 235778888888877654 5789999999999999999853 11356789
Q ss_pred EEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCc
Q 015230 122 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 122 i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~ 198 (411)
++..++|+.... .....|..+..++.....++ ..|++++++.++.. ..++++|+++..+|++|.
T Consensus 186 lv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~ 252 (500)
T 3tcm_A 186 LVPIPQYPLYSA-SIALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQ 252 (500)
T ss_dssp EEEESCCTHHHH-HHHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCC
T ss_pred EEeCCCcHhHHH-HHHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcc
Confidence 999999885443 34444554444333222111 11899999998852 124555555444556665
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCccc----cccCC---Ccc---hhhhhhhc-c-CCccccccc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQ----EYFGV---TPD---LTTLGKII-G-GGLPVGAYG 263 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~----~~~~~---~~d---~~~~sK~~-~-~G~~~g~~~ 263 (411)
+.+ .+.+++|.++|++||+++|+||+|.++ ..+ ....+ ..++. .++ +.|+||+| + +|+|+||++
T Consensus 253 ~~s-~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 331 (500)
T 3tcm_A 253 VLA-EENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFE 331 (500)
T ss_dssp CCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEE
T ss_pred cCC-HHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEE
Confidence 544 445999999999999999999999876 322 11111 11211 111 23899999 5 699999997
Q ss_pred c---cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHH-----------HHhc-CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 264 G---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 264 ~---~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+ ++++++.+... .....+.++++++++..+++ .... ++++++++++.+++.+.|+++ .
T Consensus 332 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---~ 404 (500)
T 3tcm_A 332 ITGFSAPVREQIYKI----ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL---E 404 (500)
T ss_dssp EESCCTTHHHHHHHH----HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---T
T ss_pred EeCCCHHHHHHHHHH----HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C
Confidence 6 88888877631 12356678888887777664 1122 455566777777777777654 1
Q ss_pred CCceEEeeecceEEEEEecCCCCCcch-hcccchHHHHHHHHHHHHcCeEeccCCC-------cceeeecCCCHHHHHHH
Q 015230 329 GHAICGGYISGMFGFFFTEGPVYNFED-AKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLAHSSDDIQHT 400 (411)
Q Consensus 329 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~~~~~t~~~i~~~ 400 (411)
++.......|+++|+.+..+.. .+.. ...+...+...+.+.|.++||++.|+.. ..+|+++..++++++++
T Consensus 405 g~~~~~~~g~~~~~~~~~lp~~-~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~ 483 (500)
T 3tcm_A 405 GITCNEAEGAMYVFPQICLPQK-AIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAV 483 (500)
T ss_dssp TEECCCCCBTTEECCEECCCHH-HHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHH
T ss_pred CcEEecCCeEEEEeeeecCchh-hHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHH
Confidence 2222223456677755531100 0000 0000011222244667778999998732 24799888999999999
Q ss_pred HHHHHHHHHh
Q 015230 401 ITAAEKVLRQ 410 (411)
Q Consensus 401 i~~l~~~~~~ 410 (411)
+++|.+++++
T Consensus 484 i~~l~~~~~~ 493 (500)
T 3tcm_A 484 ISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 145
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.93 E-value=2.4e-25 Score=206.91 Aligned_cols=309 Identities=17% Similarity=0.090 Sum_probs=206.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
.+|++++++.+++... .+....+...++.+++++.++ .++++++|+||++|+..+++.+ ..+++.|++.+++|++.
T Consensus 12 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~ 88 (352)
T 1iug_A 12 LHPKALEALARPQLHH-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFSE 88 (352)
T ss_dssp CCHHHHHHHHSCCCCT-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHHH
T ss_pred CCHHHHHHhccCCCCc-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchhH
Confidence 6788999988776531 111112345788888888887 4579999999999999999864 34567899999999875
Q ss_pred ch-hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHH
Q 015230 132 AD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 210 (411)
Q Consensus 132 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~ 210 (411)
.. ......|..+..++......+ |++++++ +++++|+++++++++|.+.+ +++|.
T Consensus 89 ~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i~ 144 (352)
T 1iug_A 89 RFYEIALEAGLVVERLDYPYGDTP--------------RPEDVAK------EGYAGLLLVHSETSTGALAD----LPALA 144 (352)
T ss_dssp HHHHHHHHTTCEEEEEECCTTCCC--------------CTTTSCC------SSCSEEEEESEETTTTEECC----HHHHH
T ss_pred HHHHHHHHcCCceEEEeCCCCCCC--------------CHHHHhc------cCCcEEEEEEecCCcceecC----HHHHH
Confidence 41 111223444444333211111 4555544 24667888888888899888 99999
Q ss_pred HHHHHh--CCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC-------------
Q 015230 211 RITKEN--GALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP------------- 274 (411)
Q Consensus 211 ~l~~~~--~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~------------- 274 (411)
++|++| |+++|+||+|+ + |. .+....++.+.-+.++||++.++.++|++++++++++.+..
T Consensus 145 ~l~~~~~~~~~li~D~a~~-~--~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (352)
T 1iug_A 145 RAFKEKNPEGLVGADMVTS-L--LVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKA 221 (352)
T ss_dssp HHHHHHCTTCEEEEECTTT-B--TTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHH
T ss_pred HHHHhhCCCCEEEEECCcc-c--cCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHhh
Confidence 999999 99999999996 2 11 11122223222234678988764458999888887755221
Q ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCC
Q 015230 275 AGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVY 351 (411)
Q Consensus 275 ~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 351 (411)
... .....+.+..+++++.++++.+++ ++++++++++.+++.+.|+++ ++..... ..+.++++.+..
T Consensus 222 ~~~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~---- 291 (352)
T 1iug_A 222 QKE--GESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLPE---- 291 (352)
T ss_dssp HTT--TCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECCT----
T ss_pred ccc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcCC----
Confidence 000 112446677888888888887654 356677777777777777764 2221111 257788887742
Q ss_pred CcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 352 NFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
..+..++.+.|.++||.+.++. .+.+|+++. +|++++++++++|++++++
T Consensus 292 ---------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 292 ---------GVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp ---------TCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 1113678899999999999874 345788654 5899999999999998875
No 146
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.93 E-value=8.1e-25 Score=207.56 Aligned_cols=325 Identities=12% Similarity=0.058 Sum_probs=210.2
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCCCC-----CCH---HHHH-HHHHHHhhCCCCCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFGA-----PCL---LENV-LAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~~~-----~~~---~~~~-l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
++++|+.++. +++ +|++++++.+++++ . ..+.. ... ..++ ..+++++.++.....+++++|++|
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 4578888875 443 89999999999875 1 12211 111 2232 235777777633333555668889
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCc--hhhhhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+..+++.+ ..+++.|++..++|++.. ..+....|..+...+.+.. ... ..|++++++.++..
T Consensus 98 ~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 98 NMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTE------------LIDLEEVRRLALEH- 162 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTS------------SCCHHHHHHHHHHH-
T ss_pred HHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccC------------ccCHHHHHHHHhhc-
Confidence 99999865 456788999999998763 2222223321111111100 000 12899999998742
Q ss_pred CcEEEEEE-cccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc-c-ccccCccccccCCCcchh--hhhhhccCC
Q 015230 182 GEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGG 256 (411)
Q Consensus 182 ~~~~~vi~-~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g-~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G 256 (411)
++++|++ +|+++ ...+ +++|.++|++||+++|+||+|++ + ..+.... ..+ .+|++ |+||+++ |
T Consensus 163 -~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g 230 (407)
T 2dkj_A 163 -RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-G 230 (407)
T ss_dssp -CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-C
T ss_pred -CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-C
Confidence 3556666 56553 4455 99999999999999999999984 6 4443211 111 24655 8999887 5
Q ss_pred ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 257 LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 257 ~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+|+|+++++ +++++.+..... .+.+.+.++..++++.++++.+.. ++++++++++.+++.+.|+++ ++..
T Consensus 231 ~~~G~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~ 304 (407)
T 2dkj_A 231 PRGGLILSNDPELGKRIDKLIF--PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR----GYRI 304 (407)
T ss_dssp CSCEEEEESCHHHHHHHHHHHT--TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEE
T ss_pred CCceEEEECCHHHHHHHHhhhc--ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----Ccee
Confidence 678999988 788877753211 222345566666677777776543 567778888888888888775 2211
Q ss_pred EE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------Ccceeeec------CCCHH
Q 015230 333 CG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSSD 395 (411)
Q Consensus 333 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~~------~~t~~ 395 (411)
.. +..|.++++.+.... .+...+.+.|.++||.+.++. ...+|+++ .+|++
T Consensus 305 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~ 372 (407)
T 2dkj_A 305 VTGGTDNHLFLVDLRPKG------------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPE 372 (407)
T ss_dssp GGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGG
T ss_pred ecCCCCceEEEEECcccC------------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHH
Confidence 11 245788888874311 123678888999999998763 23477765 37999
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|++++++
T Consensus 373 ~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 373 EMPLVAELIDRALLE 387 (407)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 147
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.93 E-value=2e-24 Score=203.05 Aligned_cols=321 Identities=15% Similarity=0.120 Sum_probs=210.3
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CC-----CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 108 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~a 108 (411)
|+|+.++ +..+|++++++.+.+....... +. .+...++.+++++.++ .++++++|+||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 5665554 3579999999999998632111 21 2456788888888887 567999999999999999
Q ss_pred HHHHHh--ccCCcEEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 109 LRLARA--FTGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 109 l~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
++.+.. ..+++.|++.+++|++.......+ .|..+..++... .+. .|++++++.++ +++
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i~---~~~ 139 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGE-------------VDVSFIDQKLR---DDT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TSC-------------BCHHHHHHHCC---TTE
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CCc-------------cCHHHHHHHhc---CCC
Confidence 986531 145678999999988654444332 243333333221 111 18999998886 357
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCccccccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 263 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~ 263 (411)
++|+++++++++|.+.+ +++|.++|++||++ |+||+|+ + |. ......++.+.-+.++||.++. ..+|+++
T Consensus 140 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~--g~~~~~~~~~~~di~~~s~sK~~g~-~g~G~~~ 210 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-V--GQIEVDVEKIGADMLTISSNDIYGP-KGVGALW 210 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-B--TTBCCCHHHHTCSEEEEETGGGTCC-SSCEEEE
T ss_pred eEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-c--CCcccCccccCCCEEEeehHHhcCC-CceEEEE
Confidence 88889888889999888 99999999999999 9999997 2 11 1112222322223478998652 1278888
Q ss_pred ccHHHHHHhcCCCCc----ccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee-
Q 015230 264 GRRDIMEMVAPAGPM----YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY- 336 (411)
Q Consensus 264 ~~~~~~~~~~~~~~~----~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 336 (411)
++++. .+.+.... ......+.+..+++++.++++.+.+ ++++++++++.+++.+.|+++ +.......
T Consensus 211 ~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~ 284 (382)
T 4eb5_A 211 IRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNGHP 284 (382)
T ss_dssp EETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECSCS
T ss_pred Ecccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC----CCeEEeCCc
Confidence 77653 12211000 1112345566677776777776544 455666667777777766653 22211111
Q ss_pred ---ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------------Ccceeeec
Q 015230 337 ---ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTSL 390 (411)
Q Consensus 337 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~~~~ 390 (411)
.+.++++.+.. .+..++.+.|.++||.+.++. .+.+|+++
T Consensus 285 ~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~ 350 (382)
T 4eb5_A 285 EKRLPNNVNVRFSY--------------IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTL 350 (382)
T ss_dssp SSBCTTEEEEEETT--------------SCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEEC
T ss_pred ccCCCCEEEEEeCC--------------cCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEEC
Confidence 25577776631 112578888999999998864 24578865
Q ss_pred C--CCHHHHHHHHHHHHHHHHh
Q 015230 391 A--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~--~t~~~i~~~i~~l~~~~~~ 410 (411)
. +|++++++++++|++++++
T Consensus 351 ~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 351 GRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5 6999999999999998765
No 148
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.93 E-value=3.1e-24 Score=201.55 Aligned_cols=313 Identities=15% Similarity=0.096 Sum_probs=207.1
Q ss_pred CCcHHHHHHHHHHHHcCCCCC---C-----CCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHh--ccCCcE
Q 015230 52 HADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA--FTGRER 120 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~~~~---~-----~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~--~~~~~~ 120 (411)
..+|.+++++.+.+.....+. + ..+..+++.+++++.++ .++++++|+|+++|+..+++.+.. ..+++.
T Consensus 11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~ 90 (382)
T 4hvk_A 11 PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKH 90 (382)
T ss_dssp CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCE
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCE
Confidence 368999999999998732211 1 13445688999999987 677899999999999999985421 146778
Q ss_pred EEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
|++.++.|++.......+ .|..+..++......+ |++++++.++ +++++|+++++++++|.
T Consensus 91 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~~~i~---~~~~~v~~~~~~nptG~ 153 (382)
T 4hvk_A 91 ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV--------------DVSFIDQKLR---DDTILVSVQHANNEIGT 153 (382)
T ss_dssp EEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCB--------------CHHHHHHHCC---TTEEEEECCSBCTTTCB
T ss_pred EEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCc--------------CHHHHHHHhc---cCceEEEEECCCCCcee
Confidence 888888888655544333 2443333332211111 8999998886 46789999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccccccccc-CccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcCCCC
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP 277 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~-~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~ 277 (411)
+.+ +++|.++|++||+ +|+||+|+ .+. ....+.++.+.-+.+++|.+++ ..+|+++++++. .+.+...
T Consensus 154 ~~~----~~~i~~l~~~~~~-li~D~a~~---~~~~~~~~~~~~~d~~~~s~~K~~g~-~g~g~~~~~~~~--~~~~~~~ 222 (382)
T 4hvk_A 154 IQP----VEEISEVLAGKAA-LHIDATAS---VGQIEVDVEKIGADMLTISSNDIYGP-KGVGALWIRKEA--KLQPVIL 222 (382)
T ss_dssp BCC----HHHHHHHHSSSSE-EEEECTTT---BTTBCCCHHHHTCSEEEEESGGGTSC-TTCEEEEEETTC--CCCCSSC
T ss_pred eCC----HHHHHHHHHHcCE-EEEEhHHh---cCCCCCCchhcCCCEEEEeHHHhcCC-CceEEEEEcCcc--CcCcccc
Confidence 988 9999999999999 99999996 121 1122223333334578897652 237888776553 2221100
Q ss_pred ----cccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhcCCceEEee----ecceEEEEEec
Q 015230 278 ----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY----ISGMFGFFFTE 347 (411)
Q Consensus 278 ----~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~ 347 (411)
.......+.++.++++..++++.+.+ ++.+++.+++.+++.+.|+++ +....... .+.++.+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T 4hvk_A 223 GGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI----EESYLNGHPEKRLPNNVNVRFSY 298 (382)
T ss_dssp SSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTEEECSCSSSBCTTEEEEEETT
T ss_pred cCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCccccCCCEEEEEECC
Confidence 01112445577777777777775543 556667777777777776643 32211111 13456665532
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----------------------Ccceeeec--CCCHHHHHHHHH
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTSL--AHSSDDIQHTIT 402 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~~~~~~--~~t~~~i~~~i~ 402 (411)
. +...+.+.|.++||.+.++. .+.+|+++ .+|+++++++++
T Consensus 299 ~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~ 364 (382)
T 4hvk_A 299 I--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp C--------------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHH
T ss_pred C--------------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 1 13678899999999999863 34578754 468999999999
Q ss_pred HHHHHHHh
Q 015230 403 AAEKVLRQ 410 (411)
Q Consensus 403 ~l~~~~~~ 410 (411)
+|++++++
T Consensus 365 ~l~~~~~~ 372 (382)
T 4hvk_A 365 VLPGVIER 372 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 149
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.92 E-value=3.5e-24 Score=199.37 Aligned_cols=321 Identities=16% Similarity=0.079 Sum_probs=198.5
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
..++||.++ + .++.+|++++++.+++..........+..+++++++++.++..+++++|+||++|+..+++++ .
T Consensus 7 ~~~id~~~~---~-~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~--~ 80 (356)
T 1v72_A 7 PPALGFSSD---N-IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM--T 80 (356)
T ss_dssp CCCCBCSCG---G-GCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS--C
T ss_pred CceEeeccC---C-ccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh--c
Confidence 457898876 3 356899999999888643111122467789999999998874345999999999999999853 2
Q ss_pred cCCcEEEEEeCCcCCCchh-hhhhc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH-HHHcC----CCcEEEE
Q 015230 116 TGRERIIKFEGCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAAI 187 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~-~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~----~~~~~~v 187 (411)
.+++.|++.+++|.+.... ..... |..+..++.. .+. -|++++++ .++.. ..++++|
T Consensus 81 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~~i~~~~~~~~~~~~~v 145 (356)
T 1v72_A 81 PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAK-------------LDIVRLRERTREKVGDVHTTQPACV 145 (356)
T ss_dssp CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGC-------------CCHHHHHHHTTSSTTCTTSCEEEEE
T ss_pred CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCe-------------EcHHHHHHHhhhcchhhccCCceEE
Confidence 3445666655554433322 13333 5444333221 110 18999998 88641 1267888
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c--cccCccccccC--CCcch--hhhhhhccCCcccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDL--TTLGKIIGGGLPVG 260 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~--~g~~~~~~~~~--~~~d~--~~~sK~~~~G~~~g 260 (411)
++++++ ++|.+ ++.+.+++|.++|++||++||+||+|..+ . .+... ...+ ...|+ .++||+ |.|+|
T Consensus 146 ~~~~~~-~tG~~-~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~---g~~~G 218 (356)
T 1v72_A 146 SITQAT-EVGSI-YTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP--AEMTWKAGVDALSFGATKN---GVLAA 218 (356)
T ss_dssp EEESSC-TTSCC-CCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT--TTTTGGGTCCEEEECCGGG---TCSSC
T ss_pred EEEcCC-CCCcc-CCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH--HHhhhhhcCCEEEEecccC---CCcCc
Confidence 888865 47764 45677999999999999999999999743 1 22111 1111 12333 468898 33777
Q ss_pred --cccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHhcCCceE-E
Q 015230 261 --AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAIC-G 334 (411)
Q Consensus 261 --~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~ 334 (411)
++++++++++.+..... ..++.... +..++.++++.+.++ ++.++.+++.+++++.|+++ +.... .
T Consensus 219 ~g~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~ 290 (356)
T 1v72_A 219 EAIVLFNTSLATEMSYRRK--RAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL----GGVEVLG 290 (356)
T ss_dssp EEEEESSGGGHHHHHHHHH--HTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC----TTEEEES
T ss_pred cEEEEECHHHHhhHHHHhh--ccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC----CCcEEcc
Confidence 77778887776542100 11121111 112223344444332 23455566666666666542 22211 1
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...+.++|+.+. .++.+.|.++||.+.++. .+.+|++ +.+|++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 291 GTEANILFCRLD------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCCSSEEEEEEC------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCCccEEEEEcC------------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 234667777662 368888999999999764 3457874 567999999999999987654
No 150
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=1.4e-24 Score=201.42 Aligned_cols=330 Identities=17% Similarity=0.125 Sum_probs=207.6
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
++++||.++. +.. .++++++++.+.... ....++.....++.+++++.+ +.+++++++||++|+..+++.. .
T Consensus 3 ~~~i~~~~~~---~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~~~~~~--~ 74 (347)
T 1jg8_A 3 HMMIDLRSDT---VTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--T 74 (347)
T ss_dssp --CEECSCGG---GCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--C
T ss_pred ceEEEecccc---CCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCceEEEecCcHHHHHHHHHHh--c
Confidence 4678999884 333 678888888655322 111234556677888888877 4568899999999999888743 3
Q ss_pred cCCcEEEEEeCCcCCCchh--hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEc
Q 015230 116 TGRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILE 190 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~ 190 (411)
.+++.|++.+++|...+.. .....|..+..+ .. ..+. -|+++++++++.. ..++++|+++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~~-------------~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNGA-------------MDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETTE-------------ECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCCc-------------cCHHHHHHHhccccccccCceEEEEe
Confidence 4567888888877543321 223334433322 11 0110 1899999988742 1257888888
Q ss_pred ccCCCC-CccCCCHHHHHHHHHHHHHhCCEEEEeccccc--c-ccccCccccc-cCCCcchhhhhhhccCCccccc-ccc
Q 015230 191 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEY-FGVTPDLTTLGKIIGGGLPVGA-YGG 264 (411)
Q Consensus 191 ~~~~~~-G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g--~-~~g~~~~~~~-~~~~~d~~~~sK~~~~G~~~g~-~~~ 264 (411)
+++|++ |.+.+ .+.+++|.++|++||+++|+||+|.- + ..+.. .... .+.+.-++++||++++ ++|+ ++.
T Consensus 140 ~~~npt~G~~~~-~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~-~~~~~~~~d~~~~s~sK~l~~--~~G~~~~~ 215 (347)
T 1jg8_A 140 NTHNRSGGRVVP-LENIKEICTIAKEHGINVHIDGARIFNASIASGVP-VKEYAGYADSVMFCLSKGLCA--PVGSVVVG 215 (347)
T ss_dssp SSBTTTTSBCCC-HHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC-HHHHHHTCSEEEEESSSTTCC--SSCEEEEE
T ss_pred ccccccCCccCc-HHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC-hHHhcccccEEEEecccccCC--CceEEEEc
Confidence 877776 66554 55599999999999999999999841 1 11111 0000 1122124579999985 5785 567
Q ss_pred cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEE
Q 015230 265 RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 344 (411)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~ 344 (411)
++++++.+...... .+.+...+.+.++++..+++... +. .++..++.+++.+.|+++. ..... ....+.++++.
T Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~~--~~~~~-~~~~~~~~~~~ 289 (347)
T 1jg8_A 216 DRDFIERARKARKM-LGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEIG--YSVNP-EDVKTNMVILR 289 (347)
T ss_dssp CHHHHHHHHHHHHH-HTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHHT--CBCCG-GGCCSSEEEEE
T ss_pred CHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcC--ceecc-CCCcceEEEEE
Confidence 88777665421111 22344455666666666666432 33 3445567788888887761 22111 12346778887
Q ss_pred EecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 345 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+... ..+..++.+.|.++||.+.+++...+|++ ..++++++++++++|++++++
T Consensus 290 ~~~~------------~~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 290 TDNL------------KVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp CTTS------------SSCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cccc------------cCCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 7321 11236788999999999998765678885 556999999999999998765
No 151
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=1.6e-24 Score=203.54 Aligned_cols=331 Identities=15% Similarity=0.117 Sum_probs=214.8
Q ss_pred EEecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHH
Q 015230 30 MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 30 ~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al 109 (411)
++|.+++.+.++...++..+.+|..++..+.+ +++++++++.++..+.++||+||++|+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~-----------------~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~ 68 (379)
T 3ke3_A 6 RQDIDPNGLLEYSVVYTDRALNHMSKAFQEVM-----------------NDLLSNLKTVYNAEAAVIIPGSGTYGMEAVA 68 (379)
T ss_dssp --CCSTTSCCCCCSSCCTTSCCTTSHHHHHHH-----------------HHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHhccCCCCCCCCHHHHHHH-----------------HHHHHHHHHHhCCCCEEEEcCChhHHHHHHH
Confidence 45677777777776555455666666554322 3444555566653478899999999999988
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchhhhh-hcCC--CCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADPFLV-KAGS--GVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGEI 184 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~~~~-~~g~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 184 (411)
+. +.++++||+.+++||+....... ..|. .+..++.+.. .... .+ +...|++++++.++.. ++
T Consensus 69 ~~---~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~----~~---~~~~d~~~l~~~i~~~--~~ 136 (379)
T 3ke3_A 69 RQ---LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAP----KP---FAPVDIETAVAKIKED--KS 136 (379)
T ss_dssp HH---HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSC----CC---EECCCHHHHHHHHHHH--TC
T ss_pred Hh---CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccccc----CC---CCCCCHHHHHHHHhhc--CC
Confidence 63 45778999999999975433222 2232 2222222110 0000 00 0123899999999632 45
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhccCCcccccccc
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~ 264 (411)
++|++..+++++|.+.+ .+++++|.++|++||+++|+|++++| +..+..+.++++..+.+++|+++++..+|++++
T Consensus 137 ~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~g---~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~ 212 (379)
T 3ke3_A 137 AIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIASG---CVWLDMKELGIDVLISAPQKGWSSTPCAGLVML 212 (379)
T ss_dssp SEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTCT---TCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEE
T ss_pred cEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEecccC---CccccccccCCCEEEecchhhcCCCCceEEEEE
Confidence 67778777777887665 66799999999999999999999972 334445556776777788999987556899999
Q ss_pred cHHHHHHhcCCC--Cccc--------------c---cCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH
Q 015230 265 RRDIMEMVAPAG--PMYQ--------------A---GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 322 (411)
Q Consensus 265 ~~~~~~~~~~~~--~~~~--------------~---~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~ 322 (411)
++++++.+.+.. ..+. + .+++.++.++++..++++.+.+ +++.++.+++.+++++.|+
T Consensus 213 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~ 292 (379)
T 3ke3_A 213 SAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLT 292 (379)
T ss_dssp CHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 999988876421 1111 0 1237788888888888887765 4666777888888888887
Q ss_pred HHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC---------Ccceeee--c
Q 015230 323 DAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTS--L 390 (411)
Q Consensus 323 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~~--~ 390 (411)
++.. ....... ..+.+..+... . .. ....+.|.++||.+.++. ...+|++ .
T Consensus 293 ~~g~--~~~~~~~~~~~~i~~~~~~-------------~-~~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~ 355 (379)
T 3ke3_A 293 DKGI--ESVAAEGFEAPGVVVSYTE-------------R-DD-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFG 355 (379)
T ss_dssp HTTC--CBSBCTTCBCSSEEEEECS-------------C-HH-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCS
T ss_pred HcCC--EecCCccccCceEEEEccC-------------C-cc-hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCc
Confidence 7621 1111100 11222222221 1 11 123677889999998874 3457774 4
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 015230 391 AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|++||++++++|++++++
T Consensus 356 ~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 356 LDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999998875
No 152
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=208.63 Aligned_cols=332 Identities=9% Similarity=0.004 Sum_probs=205.5
Q ss_pred cHHHHHHHHHHHHcCC-----CC---CCCCHHHHHHHHHHHhhCC----CCCEEEEeCChHHHHHHHHHHHHhccCC---
Q 015230 54 DDQVLAALGETMKKGT-----SF---GAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR--- 118 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~-----~~---~~~~~~~~~l~~~l~~~~~----~~~~v~~~~~g~~a~~~al~~~~~~~~~--- 118 (411)
+.++.+++.++++... .| .+..++++++++++.+..+ .+++|++|+|+++++..++++. ..++
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l--~~~gd~~ 180 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL--VSGGGKS 180 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH--CCCCGGG
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH--cCCCCCC
Confidence 4455566677776521 12 2335788999999988763 5789999999999999999853 2222
Q ss_pred -cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCC--cEEEEEEcccCCC
Q 015230 119 -ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVVGN 195 (411)
Q Consensus 119 -~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~--~~~~vi~~~~~~~ 195 (411)
+.|++..+.|+... ......|..+..++.....++. -|++++++.++.... ++++++++..+|+
T Consensus 181 ~d~Vlv~~p~y~~~~-~~~~~~g~~~v~~~~~~~~~~~------------~d~~~le~~l~~~~~~~~~k~i~l~np~NP 247 (498)
T 3ihj_A 181 RTGVMIPIPQYPLYS-AVISELDAIQVNYYLDEENCWA------------LNVNELRRAVQEAKDHCDPKVLCIINPGNP 247 (498)
T ss_dssp SEEEEEEESCCTHHH-HHHHHTTCEEEEEECBGGGTTB------------CCHHHHHHHHHHHTTTSEEEEEEEESSCTT
T ss_pred CCEEEEeCCCchhHH-HHHHHcCCEEEEeeccccccCC------------CCHHHHHHHHHhhhccCCCeEEEEECCCCC
Confidence 48888888888543 3344445433333221111110 089999999985321 3666665555556
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc--cCcccccc--CC------C---cchhhhhhhc-c-CCccc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF--GV------T---PDLTTLGKII-G-GGLPV 259 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g--~~~~~~~~--~~------~---~d~~~~sK~~-~-~G~~~ 259 (411)
+|.+.+ .+.+++|.++|++|+++||+||+|..+ ..+ ....+... +. . .-+.||||.+ + +|+|+
T Consensus 248 TG~v~s-~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~ 326 (498)
T 3ihj_A 248 TGQVQS-RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG 326 (498)
T ss_dssp TCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC
T ss_pred CCCcCC-HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce
Confidence 666554 444999999999999999999999876 332 11111110 00 1 1234899999 5 79999
Q ss_pred cccc---ccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHH-----------HHhc-CChHHHHHHHHHHHHHHHHHH
Q 015230 260 GAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLKE-PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 260 g~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~ 324 (411)
||++ .++++++.+... .......+.++++++.++++ .+.. ++++++++++.+++.+.|+++
T Consensus 327 G~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 327 GYMEVINLHPEIKGQLVKL----LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp EEEEEESCCHHHHHHHHHH----HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEEecCCHHHHHHHHHH----HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9997 688888887631 22345667777777666553 1111 344566667777777777654
Q ss_pred HHhcCCce-EEeeecceEEEEEecCCCCCcchh-cccchHHHHHHHHHHHHcCeEeccCC-------CcceeeecCCCHH
Q 015230 325 GKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDA-KKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSD 395 (411)
Q Consensus 325 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~~~~~~~~t~~ 395 (411)
+... .....|+++|+.+..+.. .+... ..+...+...+.+.|.++||.+.|+. ...+|+++..+++
T Consensus 403 ----~g~~~~~p~gg~~~~~~l~~p~~-~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e 477 (498)
T 3ihj_A 403 ----PGIHCNPLQGAMYAFPRIFIPAK-AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVE 477 (498)
T ss_dssp ----TTEECCCCCBSSEECCEECCCHH-HHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHH
T ss_pred ----CCcEecCCCeEEEEEEeccCchh-hhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHH
Confidence 3222 223456677766632100 00000 00001111124566778899998863 2358998889999
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|.+++++
T Consensus 478 ~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 478 KLKTVLQKVKDFHIN 492 (498)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 153
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.92 E-value=1.8e-24 Score=209.05 Aligned_cols=352 Identities=13% Similarity=0.029 Sum_probs=205.2
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.|+.|+||.++.++ +.+++++.+.+..+....+......++.+++++.+ +.++++||+||++|++.++++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~ggt~A~~~al~~~~ 112 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 112 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHc-CCCcEEEcCCcHHHHHHHHHHHH
Confidence 46789999877432 67888888887764322223455677777887777 45899999999999999998764
Q ss_pred hcc--CCcE---EEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcCC-CcEEE
Q 015230 114 AFT--GRER---IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNK-GEIAA 186 (411)
Q Consensus 114 ~~~--~~~~---vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~-~~~~~ 186 (411)
.+. .++. ||+. ..+++.+.......|..+....... .+.. ....... ..|+++++++++... +++++
T Consensus 113 ~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~le~~i~~~~~~~~~~ 186 (467)
T 1ax4_A 113 KYKQKEGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEK--AFDS---ETYDDWKGDFDIKKLKENIAQHGADNIVA 186 (467)
T ss_dssp HHHHHTTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGG--GGCT---TSCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred HhhccCCCccceEEEe-ccccchhhHHHhccCCceecccccc--cccc---cccCCcccccCHHHHHHHHHhcCCCCeeE
Confidence 420 3344 6665 3333433444444454333221110 0000 0000000 118999999998532 36899
Q ss_pred EEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc--cc---c---ccC-ccccccC----CCcch--hhhhh
Q 015230 187 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--FR---L---AYG-GAQEYFG----VTPDL--TTLGK 251 (411)
Q Consensus 187 vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g--~~---~---g~~-~~~~~~~----~~~d~--~~~sK 251 (411)
|++++++|++|...++.+++++|+++|++||++||+||++.. .. . +.. .....++ ..+|+ .++||
T Consensus 187 vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK 266 (467)
T 1ax4_A 187 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 266 (467)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred EEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccc
Confidence 999998888755666778899999999999999999998752 10 0 100 0000000 11343 36788
Q ss_pred hccCCccccc-cccc-H-HHHHHhcCCCCcc-cccCCCCCHHHHHH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 015230 252 IIGGGLPVGA-YGGR-R-DIMEMVAPAGPMY-QAGTLSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 252 ~~~~G~~~g~-~~~~-~-~~~~~~~~~~~~~-~~~t~~~~~~~~a~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
+++ +|+|+ ++++ + ++++.+......+ ...+++..+..+.+ ...+++...+++..++..++.+++.+.|++.
T Consensus 267 ~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-- 342 (467)
T 1ax4_A 267 DPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA-- 342 (467)
T ss_dssp TTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC--
Confidence 775 46654 4556 5 7766654211111 11233333333322 2234554333234555567777888888762
Q ss_pred hcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEecc-CC----------------Ccceee
Q 015230 327 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAP-SQ----------------FEAGFT 388 (411)
Q Consensus 327 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~-~~----------------~~~~~~ 388 (411)
.++.. ....|.++|+.+... ...+. ....+..++.+.| .++||.+.+ +. .+.+|+
T Consensus 343 ~~~~~--~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRl 415 (467)
T 1ax4_A 343 GIPIQ--YPTGGHAVFVDCKKL-VPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL 415 (467)
T ss_dssp TCCBC--SSCCSSEEEEESTTT-CTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred CCCcc--cCCCceEEEEehhhh-ccccc----cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEE
Confidence 22222 233477788773110 00000 0112346788888 888999987 21 145677
Q ss_pred ec---CCCHHHHHHHHHHHHHHHHh
Q 015230 389 SL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 389 ~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
++ .+|++++++++++|++++++
T Consensus 416 s~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 416 TIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp ECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ecccccCCHHHHHHHHHHHHHHHHh
Confidence 54 38999999999999987754
No 154
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.92 E-value=3.1e-24 Score=202.78 Aligned_cols=314 Identities=13% Similarity=0.121 Sum_probs=210.5
Q ss_pred CcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCC-CCC-EEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcC
Q 015230 53 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 129 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~ 129 (411)
.++++++++.+.+.. .+. ++.....++.+.+++.++ ..+ ++++|+||++|+..+++.+ ..+++.|++.+++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 567787777655432 121 112446788888888887 556 8999999999999999864 456688999999999
Q ss_pred CCch-hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHH
Q 015230 130 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 208 (411)
Q Consensus 130 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~ 208 (411)
+... ......|..+..++... .+ ..|++++++.++.. ++++|+++++++++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DR-------------PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TS-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 7421 13334455444433321 11 11899999999742 4567777777788898888 899
Q ss_pred HHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCCC----Ccc--
Q 015230 209 IRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 279 (411)
Q Consensus 209 i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~~----~~~-- 279 (411)
|.++|++||+++|+||+|+ + | ....... ..+|++ +++|+++++.++|++++++++++.+...+ ..+
T Consensus 165 i~~l~~~~~~~li~Dea~~-~--g~~~~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-L--CGVPFYMDK--WEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-B--TTBCCCTTT--TTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-c--cCCccchhh--cCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence 9999999999999999997 3 1 1111122 235654 56699887656799988988888764321 000
Q ss_pred --------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe--eecce
Q 015230 280 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGM 340 (411)
Q Consensus 280 --------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~ 340 (411)
.....+.+..+++++.++++.+.+ ++++++++++.+++.+.|+++. ........ ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG--LDIFVKDPRHRLPTV 317 (396)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--CCBSSCSGGGBCTTE
T ss_pred hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC--CeeccCCccccCCce
Confidence 112345677788888888876533 4667788888888888888762 22211100 12346
Q ss_pred EEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeEeccCC----Ccceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 341 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
+++.+.. ..+..++.+.|.++ ||.+.++. .+.+|+++ .++++++++++++|++++++
T Consensus 318 ~~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 318 TGIMIPK-------------GVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEECCT-------------TCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-------------CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 7776631 11236788888876 99998863 34578865 45899999999999998865
No 155
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.92 E-value=6.7e-24 Score=207.21 Aligned_cols=318 Identities=14% Similarity=0.064 Sum_probs=204.1
Q ss_pred CcHHHHHHHHHHHHcCC---CCC---C--CCHHHHHHHHHHHhhCCCC---CEE--EEeCChHHHHHHHHHHHHhcc---
Q 015230 53 ADDQVLAALGETMKKGT---SFG---A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFT--- 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---~~~---~--~~~~~~~l~~~l~~~~~~~---~~v--~~~~~g~~a~~~al~~~~~~~--- 116 (411)
.++.+.+++.+++.... .+. + ....+.++.+++++.++.. +++ ++|+||++|+..++++++...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 45667777766665421 111 1 1456678889999999732 677 999999999999999775443
Q ss_pred ---CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccC
Q 015230 117 ---GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 193 (411)
Q Consensus 117 ---~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~ 193 (411)
.++.|++..++|++ +..+....|.++..++......+ |+++++++++ +++++|++++++
T Consensus 188 ~g~~~d~Vi~~~~~~~~-~~~~~~~~G~~v~~v~~~~~~~~--------------d~~~Le~~i~---~~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAA-FDKAAQYFGIKLVRTPLDADYRA--------------DVAAMREAIT---PNTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTH-HHHHHHHHTCEEEEECBCTTSCB--------------CHHHHHHHCC---TTEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchH-HHHHHHHcCCeeEEeeeCCCCCC--------------CHHHHHHHhc---cCCEEEEEeCCC
Confidence 12688888888876 44444455655555443221111 8999999886 368888888888
Q ss_pred CCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c-----ccc---CccccccCCCcchhhhhhhccCCcccccccc
Q 015230 194 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264 (411)
Q Consensus 194 ~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~-----~g~---~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~ 264 (411)
+++|.+.+ +++|.++|++||++||+||+|+++ . .|. .+.....+++..+.+++|++.+|.++|+++.
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 88999988 999999999999999999999876 3 122 2223334554445578899888888999977
Q ss_pred cHHHHHHhcCC-CC----------cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 265 RRDIMEMVAPA-GP----------MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 265 ~~~~~~~~~~~-~~----------~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
+++........ .. ...++....+.+++.+++..+.....+++.++.+++.+++.+.|+++ +....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI----PSLKI 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCEE
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEE
Confidence 66554432210 00 00111111122334444433322212567778888888888888764 22221
Q ss_pred EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-Ccceeee---cCCCHHHHHHHHHHHHHHHH
Q 015230 334 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTS---LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 334 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~~~~~---~~~t~~~i~~~i~~l~~~~~ 409 (411)
......++++.... .+..++.+.|.++||++.... .+.+|+. ..++++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~~~--------------~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVASDE--------------LNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEECSS--------------SCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeCCC--------------CCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 22224466664421 113678999999999884332 2345653 45577999999999999876
Q ss_pred h
Q 015230 410 Q 410 (411)
Q Consensus 410 ~ 410 (411)
+
T Consensus 468 ~ 468 (514)
T 3mad_A 468 Q 468 (514)
T ss_dssp H
T ss_pred H
Confidence 5
No 156
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.91 E-value=7.3e-23 Score=195.68 Aligned_cols=331 Identities=13% Similarity=0.061 Sum_probs=199.8
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CC-----CHHHHHHHHHHHhhCC-CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~-----~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a 104 (411)
++..|+|+.++ . ..+|++++++.+.+.....+. +. .+...++.+++++.++ .++++++|+|+++|
T Consensus 17 ~~~~~Ld~~~~---~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNAT---T---PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTC---C---CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCcc---C---CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 56677776655 2 578999999999987732221 11 1234688888888887 56799999999999
Q ss_pred HHHHHHHHHh-c-----cCCcEEEEEeCCcCCCch----------------hhhhhcCCCCcccCCCCCCCCCCCCCCce
Q 015230 105 CMGVLRLARA-F-----TGRERIIKFEGCYHGHAD----------------PFLVKAGSGVATLGLPDSPGVPKGATYET 162 (411)
Q Consensus 105 ~~~al~~~~~-~-----~~~~~vi~~~~~~~~~~~----------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 162 (411)
+..+++.+.. + .+++.|++..++|++... ......|..+..++.....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~-------- 162 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQ-------- 162 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSS--------
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCC--------
Confidence 9999986531 1 356889999999987411 111112443444332211111
Q ss_pred eecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC----------CEEEEeccccccccc
Q 015230 163 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLA 232 (411)
Q Consensus 163 ~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~----------~~li~De~~~g~~~g 232 (411)
.|++++++.++ +++++|+++++++++|.+.+ +++|.++|++|+ +++|+||+|+....
T Consensus 163 -----~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~- 229 (432)
T 3a9z_A 163 -----VEVEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR- 229 (432)
T ss_dssp -----CCHHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-
T ss_pred -----cCHHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-
Confidence 17899988776 36889999999999999998 999999999999 99999999962221
Q ss_pred cCccccccCCCcch--hhhhhhccCCcccccccccHHH-HHHhcCCCC----cccccCCCCCHHHHHHHHHHHHHHhc--
Q 015230 233 YGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDI-MEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE-- 303 (411)
Q Consensus 233 ~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~-~~~~~~~~~----~~~~~t~~~~~~~~a~~~~~l~~~~~-- 303 (411)
....... .+|+ .|++|+++ .++|+++++++. ...+.+... .....+++.++.+++++.++++.+++
T Consensus 230 -~~~~~~~--~~d~~~~s~~K~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~ 304 (432)
T 3a9z_A 230 -RVDVEDL--GVDFLTIVGHKFYG--PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENC 304 (432)
T ss_dssp -CCCHHHH--CCSEEEEEGGGTTC--CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -ccChhhc--CCCEEEEehhHhcC--CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhH
Confidence 1111112 3454 47899874 579999888765 332321100 01122456788888888788876654
Q ss_pred CChHHHHHHHHHHHHHHHHHHH-HhcCCceE---EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 304 PGTYEYLNKITGELTQGIIDAG-KKAGHAIC---GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
++++++++++.+++.+.|+++. ........ ....+.+++|.+.+... + ...+.+.+ +|+.+.
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~l--~~i~~~ 370 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------R---GYMVLAQC--QTLLAS 370 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------C---HHHHHHHC--SSEECB
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------c---HHHHHHHh--cCeEEe
Confidence 6677888888888888888752 11110000 11235577777743210 1 12333333 244443
Q ss_pred cC------------------C------CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 380 PS------------------Q------FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ~~------------------~------~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
.+ + ...+|+++. +|++++++++++|++++++
T Consensus 371 ~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 371 VGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp SSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 1 145787644 4899999999999998765
No 157
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.91 E-value=4e-24 Score=202.32 Aligned_cols=326 Identities=14% Similarity=0.067 Sum_probs=191.6
Q ss_pred ecCCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC--------CCCHHHHHHHHHHHhhCC-CCCEEEEeCChH
Q 015230 32 DIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGT 102 (411)
Q Consensus 32 ~~~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~--------~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ 102 (411)
+.++..|+|+.++ . ..+|++++++.+.+....... +..+..+++.+++++.++ .++++++|+||+
T Consensus 17 ~~~~~iyld~~~~---~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t 90 (400)
T 3vax_A 17 RGSHMTYLDAAAT---T---RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGAT 90 (400)
T ss_dssp -----CCCCCCCC---S---SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHH
T ss_pred ccCCcEEecCCCC---C---CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHH
Confidence 3455667787665 2 368999999999987521111 123446789999999987 568999999999
Q ss_pred HHHHHHHHHHHhc--cCCc-EEEEEeCCcCCCchhhhhh--cCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHH
Q 015230 103 EACMGVLRLARAF--TGRE-RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 177 (411)
Q Consensus 103 ~a~~~al~~~~~~--~~~~-~vi~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 177 (411)
+|+..+++.+... .+++ .|++..+.|++.......+ .|..+..++... .+. -|++++++.+
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~~i 156 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGR-------------ISVEGVMERL 156 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TCC-------------CCHHHHHTTC
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CCC-------------cCHHHHHHhc
Confidence 9999999854211 3466 8888888887654444433 233333333221 111 1889998887
Q ss_pred HcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC
Q 015230 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 255 (411)
Q Consensus 178 ~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~ 255 (411)
+ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+. +.. ..+.... +|++ +++|.++
T Consensus 157 ~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~---~~~-~~~~~~~-~d~~~~s~~K~~g- 223 (400)
T 3vax_A 157 R---PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQGY---GKV-PGDLTTP-IDMISISGHKIGA- 223 (400)
T ss_dssp C---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTTT---TTS-GGGGGSC-CSEEEEETGGGTS-
T ss_pred C---CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhhc---CCC-CcChhhc-CcEEEEeHHHhCC-
Confidence 6 46889999999999999988 99999999999999999999971 111 1111222 5654 6779554
Q ss_pred Cccccccc-ccHH-HH---HHhcCCC----CcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHH
Q 015230 256 GLPVGAYG-GRRD-IM---EMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 256 G~~~g~~~-~~~~-~~---~~~~~~~----~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~ 324 (411)
+..+|+++ ++++ +. ..+.+.. ........+.++.++++..++++.+.+ ++++++.+++.+++.+.|+ .
T Consensus 224 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~ 302 (400)
T 3vax_A 224 PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-S 302 (400)
T ss_dssp CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-C
Confidence 22477777 6652 11 1122110 001122445677777777777776554 5666777777777777776 2
Q ss_pred HHhcCCceEEee----ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC------------------
Q 015230 325 GKKAGHAICGGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------------------ 382 (411)
Q Consensus 325 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------------------ 382 (411)
+....... .+.++++.+.. .+..++.+.|. +||.+.++.
T Consensus 303 ----~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~ 363 (400)
T 3vax_A 303 ----TSFQVNGDQDHVVPHILNLSFED--------------VDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGL 363 (400)
T ss_dssp ----TTCEECSCTTSBCTTEEEEECTT--------------CCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTC
T ss_pred ----CCEEEeCCcccCCCCEEEEEeCC--------------CCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCC
Confidence 22111111 23566665532 11367888888 999998853
Q ss_pred -----Ccceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 383 -----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 -----~~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+++ ..|++++++++++|++++++
T Consensus 364 ~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 364 PEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp CHHHHTSEEEEEEEEC--------------------
T ss_pred CccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 24577765 56899999999999998764
No 158
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.91 E-value=1.5e-23 Score=204.98 Aligned_cols=345 Identities=11% Similarity=0.055 Sum_probs=200.9
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH-HhhCC------CCCEEEEeCChHHHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMV-ISAVP------SIEMVRFVNSGTEACMG 107 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~---~~~~~~~~l~~~l-~~~~~------~~~~v~~~~~g~~a~~~ 107 (411)
++||..+ ..++.++.+.+++.+.+.. ..|+ +..++++++++.+ .+... ..++|++|+|+++++..
T Consensus 106 ~i~l~~g----~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~ 180 (546)
T 2zy4_A 106 SLSYVRD----QLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAY 180 (546)
T ss_dssp HHHHHHH----TSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHH
T ss_pred hhecccC----CCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHH
Confidence 4555544 4467778888888887753 2332 3456777766655 44332 24799999999999999
Q ss_pred HHHHH--Hh-ccCCcEEEEEeCCcCCCchhhhhhc-CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 108 VLRLA--RA-FTGRERIIKFEGCYHGHADPFLVKA-GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 108 al~~~--~~-~~~~~~vi~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+++.. +. ..+++.|++.+++|++....+.... |..+..++.....++. .|++++++.++ .+
T Consensus 181 ~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~d~~~l~~~~~---~~ 245 (546)
T 2zy4_A 181 IFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQ------------YPDSELDKLKD---PA 245 (546)
T ss_dssp HHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTB------------CCHHHHGGGGS---TT
T ss_pred HHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCC------------CCHHHHHHhhC---CC
Confidence 98753 11 3456789999999987554432221 2222222221111111 17888877653 35
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHH--HHhCCEEEEecccccc-ccccCccccc-cCCCcchhhhhhhcc-CCcc
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGF-RLAYGGAQEY-FGVTPDLTTLGKIIG-GGLP 258 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~--~~~~~~li~De~~~g~-~~g~~~~~~~-~~~~~d~~~~sK~~~-~G~~ 258 (411)
+++++++..+|++|.+.+ .+.+++|.++| ++||++||+||+|++| ...... ... .+....+.||||.++ +|+|
T Consensus 246 ~k~v~l~~p~NPtG~~~~-~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~-~~~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 246 IKIFFCVNPSNPPSVKMD-QRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSL-FAICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp EEEEEEESSCSSSCBCCC-HHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCH-HHHCGGGEEEEEESTTTTTCGGGC
T ss_pred CeEEEEECCCCCCCccCC-HHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCH-HHhCCCCEEEEEeCccccCCCCcc
Confidence 676666555666776655 44599999999 7899999999999977 322111 111 122233569999998 7999
Q ss_pred cccccccHH-HHHHhcCCC---------------------------------CcccccCCCCCHHHHHHHH-H-HHHHHh
Q 015230 259 VGAYGGRRD-IMEMVAPAG---------------------------------PMYQAGTLSGNPLAMTAGI-H-TLKRLK 302 (411)
Q Consensus 259 ~g~~~~~~~-~~~~~~~~~---------------------------------~~~~~~t~~~~~~~~a~~~-~-~l~~~~ 302 (411)
+||++++++ +++.+.... ......+.+.+.+++.+.. . ....+.
T Consensus 324 iG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 324 LGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 999988775 666552100 0001223345556555432 1 112232
Q ss_pred c-CChHH----HHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCC----CCCcchhccc-chHHHHHHHHHHH
Q 015230 303 E-PGTYE----YLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VYNFEDAKKS-ETTKFARFYRGML 372 (411)
Q Consensus 303 ~-~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~l~ 372 (411)
+ +...+ .++++.+.+.+.|. .++.......|+++|+++.... ...+. .+.. .......+.+.+.
T Consensus 404 ~~~~~~~~~r~~~~~r~~~l~~~L~-----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 404 EADEYKHTLKQLIRRRETTLYRELG-----MPPLRDENAVDYYTLIDLQDVTAKLYGEAFS-EWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHGGGT-----SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHH-HHHHHHCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcC-----CCcccCCCCeeEEEEEEHHHhhcccccHHHH-HHhhccCCHHHHHHHHHH
Confidence 2 22222 23333333322221 1222222345778898873200 00000 0000 0012345778888
Q ss_pred HcCeEeccCC-----CcceeeecCC-CHHHHHHHHHHHHHHHHh
Q 015230 373 EEGVYFAPSQ-----FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 373 ~~Gi~v~~~~-----~~~~~~~~~~-t~~~i~~~i~~l~~~~~~ 410 (411)
++||.+.|+. .+.+|+++.. +++++++++++|++++.+
T Consensus 478 ~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 478 ETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp HHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 9999999974 2358998766 899999999999988764
No 159
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.91 E-value=1.2e-23 Score=198.98 Aligned_cols=318 Identities=13% Similarity=0.081 Sum_probs=207.4
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 115 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~ 115 (411)
+.|+||.++. .++ +|++++++.+.++.. .+ +......++.+.+++.++ .+++++++||++|+..+++.+ ..
T Consensus 30 ~~~id~~~~~--~~~---~~~v~~a~~~~~~~~-~y-~~~~~~~~l~~~la~~~~-~~~~v~~~~Gt~a~~~~l~~~-~~ 100 (399)
T 2oga_A 30 VPFLDLKAAY--EEL---RAETDAAIARVLDSG-RY-LLGPELEGFEAEFAAYCE-TDHAVGVNSGMDALQLALRGL-GI 100 (399)
T ss_dssp BCSCCHHHHH--HHT---HHHHHHHHHHHHHHT-CC-SSSHHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHHHT-TC
T ss_pred CcccccCcCC--CCC---CHHHHHHHHHHHhcC-CC-CCchhHHHHHHHHHHHHC-CCeEEEecCHHHHHHHHHHHh-CC
Confidence 5678988774 222 288999999998763 22 234667788888888885 347889999999999999853 14
Q ss_pred cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 116 ~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
.+++.|++..++|++.. ......|..+..++...... ..|++++++.++ +++++|+++ ++
T Consensus 101 ~~gd~vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~---~~~~~v~~~---n~ 160 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASW-LAVSATGATPVPVEPHEDHP-------------TLDPLLVEKAIT---PRTRALLPV---HL 160 (399)
T ss_dssp CTTCEEEEESSSCTHHH-HHHHHTTCEEEEECBCSSSS-------------SBCHHHHHHHCC---TTEEEECCB---CG
T ss_pred CCcCEEEECCCccHHHH-HHHHHCCCEEEEEecCCCCC-------------CcCHHHHHHhcC---CCCeEEEEe---CC
Confidence 56688999999998743 34444455444433221101 118999998886 357777643 44
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-c-cccCccccccCCCcchhhh----hhhccC-Cccccccccc-HH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-LAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RD 267 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~-~g~~~~~~~~~~~~d~~~~----sK~~~~-G~~~g~~~~~-~~ 267 (411)
+|.+.+ +++|.++|++||+++|+||+|+.+ . .+. .++..+|++++ ||++++ | +.|+++.+ ++
T Consensus 161 tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~ 230 (399)
T 2oga_A 161 YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPE 230 (399)
T ss_dssp GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHH
T ss_pred cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHH
Confidence 787777 999999999999999999999733 2 121 12323566644 699996 8 89998775 77
Q ss_pred HHHHhcCCCCc---------ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-Eeee
Q 015230 268 IMEMVAPAGPM---------YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYI 337 (411)
Q Consensus 268 ~~~~~~~~~~~---------~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 337 (411)
+++.+...... ..+.++..++++++++.++++.++ ++.++.+++.+++.+.|+++. ++... ....
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~ 305 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP---GIGLPVTAPD 305 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT---TCBCCCCCTT
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC---CccccCCCCC
Confidence 77665421000 012234668888888887776543 345556666666666665431 11111 0111
Q ss_pred cceE--EEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceee
Q 015230 338 SGMF--GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT 388 (411)
Q Consensus 338 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~ 388 (411)
+..+ .+.+... +..++.+.|.++||.+.++.. ..+|+
T Consensus 306 ~~~~~~~~~~~~~--------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi 371 (399)
T 2oga_A 306 TDPVWHLFTVRTE--------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSL 371 (399)
T ss_dssp EECCCSSEEEECS--------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEE
T ss_pred CcceeEEEEEECC--------------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEc
Confidence 2222 2333211 136789999999999987531 23676
Q ss_pred e--cCCCHHHHHHHHHHHHHHHHhC
Q 015230 389 S--LAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 389 ~--~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+ ..+|++++++++++|+++++++
T Consensus 372 ~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 372 PIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4 5679999999999999988764
No 160
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=4.5e-23 Score=195.43 Aligned_cols=323 Identities=13% Similarity=0.079 Sum_probs=203.4
Q ss_pred CEEEeccCCccccccCCCcHHHHHHHHHHHHc-C-CCCC----CC-CH----HHHHHHHHHHhhCCCCCEEEEeCChHHH
Q 015230 36 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFG----AP-CL----LENVLAEMVISAVPSIEMVRFVNSGTEA 104 (411)
Q Consensus 36 ~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~-~~~~----~~-~~----~~~~l~~~l~~~~~~~~~v~~~~~g~~a 104 (411)
+.++|+.++ +++ +|++++++.+++.+ . ..+. +. .. +++.+.+++++.++.....+++++|++|
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a 97 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQA 97 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHH
Confidence 457787665 554 89999999999863 2 1111 11 12 2233446888888633444555677999
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCcCCCchhh--hhhcCC--CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC
Q 015230 105 CMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGS--GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180 (411)
Q Consensus 105 ~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~--~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 180 (411)
+..+++.+ ..+++.|++..++|++..... ....|. .+...+...... ..|++++++.+++.
T Consensus 98 ~~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 98 NMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETH-------------VIDYDDVREKARLH 162 (405)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTC-------------SBCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCEEEEecccccchhcccchhhhccceeEEEecccccccC-------------CcCHHHHHHHHHhc
Confidence 99999864 456678888888776543211 112222 111111110001 11899999998742
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCC-Ccchh--hhhhhccC
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGV-TPDLT--TLGKIIGG 255 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~ 255 (411)
++++|++++.+ .|...+ +++|.++|++||++||+||+|+ |. ..+.. . .++ .+|++ |+||+++|
T Consensus 163 --~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~-~---~~~~~~di~~~s~sK~~~g 230 (405)
T 2vi8_A 163 --RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH-P---NPVPYAHFVTTTTHKTLRG 230 (405)
T ss_dssp --CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS-C---CSTTTCSEEEEESSSTTCC
T ss_pred --CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEccccccccccCcC-C---CccccCCEEEEeccccCCC
Confidence 35677775533 344444 9999999999999999999998 22 22211 1 111 35655 89999984
Q ss_pred CcccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCce
Q 015230 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 332 (411)
Q Consensus 256 G~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 332 (411)
+. .|++++++++++.+..... .....+.++..++++.++++.+.. ++++++++++.+++.+.|+++ ++..
T Consensus 231 ~~-gG~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~ 303 (405)
T 2vi8_A 231 PR-GGMILCQEQFAKQIDKAIF--PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----GFTL 303 (405)
T ss_dssp CS-CEEEEECHHHHHHHHHHHT--TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEE
T ss_pred CC-CeEEEEcHHHHHHHHhhhc--ccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CCeE
Confidence 32 2899889888877653211 111123356666666677776543 567788888888888888775 2221
Q ss_pred EE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----------CcceeeecC------CCHH
Q 015230 333 CG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------HSSD 395 (411)
Q Consensus 333 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~~~~~~~------~t~~ 395 (411)
.. .+.+.++++.+.... .+...+.+.|.++||.+.++. ...+|+++. ++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~ 371 (405)
T 2vi8_A 304 VSGGTDNHLLLVDLRPQQ------------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLE 371 (405)
T ss_dssp GGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred ecCCCCceEEEEEccCCC------------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHH
Confidence 11 134778888874211 123678888999999998752 234777533 6899
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|++++++
T Consensus 372 ~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 372 EMDEIAAIIGLVLKN 386 (405)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998865
No 161
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=1.3e-22 Score=193.41 Aligned_cols=323 Identities=14% Similarity=0.082 Sum_probs=186.8
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCC----------CHHHHHHH-HHHHhhCCCCCEE-EEeCChHHHH
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAP----------CLLENVLA-EMVISAVPSIEMV-RFVNSGTEAC 105 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~----------~~~~~~l~-~~l~~~~~~~~~v-~~~~~g~~a~ 105 (411)
.+++.++ .+ +.||++++++.+++......+++ .+..++++ +++++.++ .+.+ ++++||++|+
T Consensus 34 ~i~l~~~---~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~v~~~~Gs~a~ 107 (425)
T 3ecd_A 34 QVELIAS---EN--IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN-AGHANVQPHSGAQAN 107 (425)
T ss_dssp SEECCTT---CC--CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT-CSEEECCCSSHHHHH
T ss_pred ceeeecc---cC--CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC-CCCceeecCchHHHH
Confidence 4666555 22 23999999999988542111111 12345555 66666664 4444 5589999999
Q ss_pred HHHHHHHHhccCCcEEEEEeCCcCCCc-hhhh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCc
Q 015230 106 MGVLRLARAFTGRERIIKFEGCYHGHA-DPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 183 (411)
Q Consensus 106 ~~al~~~~~~~~~~~vi~~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 183 (411)
+.+++.+ ..+++.|++.+++|++.. .... ...|.++...+.+..... . .-|++++++.+++. +
T Consensus 108 ~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~---~~d~~~l~~~i~~~--~ 172 (425)
T 3ecd_A 108 GAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDT--------M---LIDYDQVEALAQQH--K 172 (425)
T ss_dssp HHHHHHH--CCTTCEEEEECC------------------CEEEEECCCTTT--------S---SCCHHHHHHHHHHH--C
T ss_pred HHHHHHc--cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCccc--------C---ccCHHHHHHHHhhc--C
Confidence 9999864 556789999999998732 2221 122332222111111000 0 11899999999742 4
Q ss_pred EEEEEEc-ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcch--hhhhhhccCCcc
Q 015230 184 IAAIILE-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTLGKIIGGGLP 258 (411)
Q Consensus 184 ~~~vi~~-~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~ 258 (411)
+++|+++ |++ |...+ +++|.++|++||++||+||+|. |+ ..+..... .. .+|+ .|+||++ +|+|
T Consensus 173 ~~~v~~~~~~~---~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~ 241 (425)
T 3ecd_A 173 PSLIIAGFSAY---PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPR 241 (425)
T ss_dssp CSEEEEECSCC---CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCS
T ss_pred CcEEEEccccC---CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCC
Confidence 5667666 443 44445 9999999999999999999974 55 44432211 11 1344 4788999 4568
Q ss_pred ccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-c--CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 259 VGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 259 ~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
+||++++ +.+.+.+... ...+.+.+.+....+++..++.... . ++++++++++.+++++.|++. ++....
T Consensus 242 ~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~ 315 (425)
T 3ecd_A 242 GGFVLTNDEEIAKKINSA--VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GVDLVT 315 (425)
T ss_dssp CEEEEESCHHHHHHHHHH--HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGG
T ss_pred cEEEEeCCHHHHHHHHhh--hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CCeecc
Confidence 9999887 5666665421 1111122334444444444443332 2 466777888888888888764 322111
Q ss_pred -eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----cCC------Ccceeee------cCCCHHHH
Q 015230 335 -GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ------FEAGFTS------LAHSSDDI 397 (411)
Q Consensus 335 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~~------~~~~~~~------~~~t~~~i 397 (411)
...+.++++.+.... .....+.+.|.++||.+. |+. ...+|+. ..++++++
T Consensus 316 ~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 316 GGTDNHLLLVDLRPKG------------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp GSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred CCCCceEEEEEeCCCC------------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 134667788774311 123678888999999998 431 1235653 33468999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
++++++|++++++
T Consensus 384 ~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 384 REVGRLILEVFEA 396 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 162
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.91 E-value=2.3e-23 Score=200.56 Aligned_cols=344 Identities=15% Similarity=0.057 Sum_probs=202.6
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.|+.|+||.++.++.+ .++++.+++. .............++.+.+++.+ +.+++++|+||++|+..+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~al~~l- 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEAYAGSENFYHLERTVQELF-GFKHIVPTHQGRGAENLLSQLA- 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHHHH-
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhhcccChhHHHHHHHHHHHh-CCCcEEEeCCcHHHHHHHHHHh-
Confidence 5667899988753222 3566666554 22211123555667777777777 5568999999999999999854
Q ss_pred hccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC--CCCCCCCCCceeecCCC-CHHHHHHHHHcCC-CcEEEEEE
Q 015230 114 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIIL 189 (411)
Q Consensus 114 ~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-d~~~l~~~~~~~~-~~~~~vi~ 189 (411)
. ++++ ++..++||+.+.......|..+..++.... ... ...+.++ |+++++++++... ..+++|++
T Consensus 111 -~-~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~-------~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l 180 (456)
T 2ez2_A 111 -I-KPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL-------NIAFKGDIDLKKLQKLIDEKGAENIAYICL 180 (456)
T ss_dssp -C-CTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC-------CCSCTTCBCHHHHHHHHHHHCGGGEEEEEE
T ss_pred -C-CCCC-EeccccccchhHHHHHHcCCEEEEecccccccccc-------cccccCCCCHHHHHHHHHhccccceeEEEE
Confidence 2 3334 888888877655666666665544332210 000 0000011 8999999997532 23577777
Q ss_pred c-ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc----------c-ccccCcc--ccccCCCcchhhh--hhhc
Q 015230 190 E-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTL--GKII 253 (411)
Q Consensus 190 ~-~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g----------~-~~g~~~~--~~~~~~~~d~~~~--sK~~ 253 (411)
+ |+|+++|. ..+.+++++|.++|++||++||+||+|+. + ..|.... .+..+..+|++++ +|..
T Consensus 181 ~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~ 259 (456)
T 2ez2_A 181 AVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDC 259 (456)
T ss_dssp ESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTT
T ss_pred eccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccC
Confidence 7 44447775 45677799999999999999999999973 3 3332210 0011233566544 4544
Q ss_pred cCCcccccccc-cHHHHHHhcCCCCcccc-cC-CCCCHHHHHH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcC
Q 015230 254 GGGLPVGAYGG-RRDIMEMVAPAGPMYQA-GT-LSGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 329 (411)
Q Consensus 254 ~~G~~~g~~~~-~~~~~~~~~~~~~~~~~-~t-~~~~~~~~a~-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (411)
+.| +.||+++ ++++++.+........+ .+ .+.+...+++ +.+.++.+. ++..++.+++.+++++.|++. +
T Consensus 260 ~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~----g 333 (456)
T 2ez2_A 260 LVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA----G 333 (456)
T ss_dssp CCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT----T
T ss_pred CCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC----C
Confidence 445 6888887 67777765421111111 11 1223333333 344443332 345666677777777777763 2
Q ss_pred CceEEeeecceEEEEEec--CCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----------------Ccceeee
Q 015230 330 HAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----------------FEAGFTS 389 (411)
Q Consensus 330 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~-----------------~~~~~~~ 389 (411)
+.......|.++++.+.. .... ........+.+.| .++||.+.+.+ ...+|++
T Consensus 334 ~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis 406 (456)
T 2ez2_A 334 VPIVEPVGGHAVFLDARRFCEHLT-------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLT 406 (456)
T ss_dssp CCBCSSCCSSEEEEEHHHHTTTSC-------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEE
T ss_pred CccccCCCceEEEEEhHHhcCCCC-------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEE
Confidence 221112347788887632 1110 0111135567777 67799864421 1457775
Q ss_pred cC---CCHHHHHHHHHHHHHHHHh
Q 015230 390 LA---HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 390 ~~---~t~~~i~~~i~~l~~~~~~ 410 (411)
+. +|++++++++++|++++++
T Consensus 407 ~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 407 IPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 44 7999999999999998764
No 163
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.91 E-value=6.4e-23 Score=193.88 Aligned_cols=286 Identities=13% Similarity=0.047 Sum_probs=191.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 149 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~ 149 (411)
+..+..+++.+++++.++. ++++++++|++|+..+++.+ ..+++.|++..+.|++...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g~-~~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLERG-EAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-------- 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC--------
Confidence 3577888999999998853 47778888999999999854 3466889999999987544331 22222
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+..
T Consensus 130 -----------~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 130 -----------NVRFVDAAKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp -----------EEEEECTTSHHHHHHHCC---TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -----------EEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 344555568999998886 36889999999999999988 999999999999999999999733
Q ss_pred ccccCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHH-HhcCCCCccccc-CCCCCHHHHHHHHHHHHHHhcCC
Q 015230 230 RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 305 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~-~~~~~~~~~~~~-t~~~~~~~~a~~~~~l~~~~~~~ 305 (411)
..+... .++.+..+.|+||++++ |+|+ |++++++++++ .+.. ..... +.+.++++++++.++++.+ +.
T Consensus 192 ~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 263 (398)
T 2rfv_A 192 YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV---GLKDITGGCMSPFNAWLTLRGVKTL--GI 263 (398)
T ss_dssp TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT---HHHHTTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH---HHHhCCCCCCCHHHHHHHHhhhhhH--HH
Confidence 111111 23444445789999984 8898 99999988876 5552 22222 4567888888888877543 22
Q ss_pred hHHHHHHHHHHHHHHHHHHH----------HhcCCceE----EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 306 TYEYLNKITGELTQGIIDAG----------KKAGHAIC----GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..++..++...+.+.|++.. ...+.... .++.|.++++++.+ .......+.+.+
T Consensus 264 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~l~~~~ 331 (398)
T 2rfv_A 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG------------GLEAGRRMINSV 331 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC------------CHHHHHHHHHhC
Confidence 34455566666666665431 00010000 02357888888732 112334555555
Q ss_pred HHcCeEeccCC---------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 372 LEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 372 ~~~Gi~v~~~~---------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
...|+.+.++. .+.+|++ ...++++++.++++|+++
T Consensus 332 ~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 332 ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 55577776652 2346774 555788888888888754
No 164
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.91 E-value=3.6e-23 Score=194.88 Aligned_cols=342 Identities=10% Similarity=0.028 Sum_probs=207.0
Q ss_pred CCCEEEeccCCccccccCC--CcHHHHHHHHHHHHcCCC--C---CCCCHHHHHHHHHHHhhCC--CCCEEEEeCChHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKGTS--F---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEA 104 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~--~~~~v~~a~~~~l~~~~~--~---~~~~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a 104 (411)
|++..+|+..+..-+.-|. ..|.|++|....++.... | .+..++++.+++.+..... +....+.|.||+.|
T Consensus 42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga 121 (420)
T 4h51_A 42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGA 121 (420)
T ss_dssp CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHH
T ss_pred CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHH
Confidence 3444688877743344554 236788887777766432 2 3457777888777643322 23345678999999
Q ss_pred HHHHHHHHHh-c-cCCcEEEEEeCCcCCCchhhhhhcCC-CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC
Q 015230 105 CMGVLRLARA-F-TGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 181 (411)
Q Consensus 105 ~~~al~~~~~-~-~~~~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 181 (411)
+..++.++.. + .+++.|++.+|+|..+. ......|. .+...+..+.... . .|.+.+.+.++..+
T Consensus 122 ~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~-~i~~~aG~~~V~~~~~~~~~~~---------~---~d~~~~~~~l~~~~ 188 (420)
T 4h51_A 122 VSLGAKLLTRVFDAETTPIYLSDPTWPNHY-GVVKAAGWKNICTYAYYDPKTV---------S---LNFEGMKKDILAAP 188 (420)
T ss_dssp HHHHHHHHTTTSCTTTSCEEEEESCCTHHH-HHHHHTTCCCEEEEECEEGGGT---------E---ECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCchhHH-HHHHHcCCeEEEeecccccccc---------C---CCHHHHHHHHhccC
Confidence 9988875533 3 35678999999997543 44444443 3332221111110 0 07788888887766
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc----Cccccc-cCCCcc---hhhhhhhc
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY----GGAQEY-FGVTPD---LTTLGKII 253 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~----~~~~~~-~~~~~d---~~~~sK~~ 253 (411)
++..+++.++.+|++|... +.+.+++|.++|+++++++|+||+|.+|..|. .+.... .+..+. +.+|||.|
T Consensus 189 ~~~~vll~~~p~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 267 (420)
T 4h51_A 189 DGSVFILHQCAHNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNM 267 (420)
T ss_dssp SSCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccc
Confidence 6777777777777777554 46669999999999999999999999883221 111110 111122 34899999
Q ss_pred c-CCcccccccccHHHHHH---hcC-CCCcccccCCCCCHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHHHHH
Q 015230 254 G-GGLPVGAYGGRRDIMEM---VAP-AGPMYQAGTLSGNPLAMTAGIHTLKR------LKE--PGTYEYLNKITGELTQG 320 (411)
Q Consensus 254 ~-~G~~~g~~~~~~~~~~~---~~~-~~~~~~~~t~~~~~~~~a~~~~~l~~------~~~--~~~~~~~~~~~~~~~~~ 320 (411)
+ .|+|+||+++.....+. +.. ..........+.+..++.++...+.. ++. +.++++++++++.+.+.
T Consensus 268 ~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~ 347 (420)
T 4h51_A 268 GLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDE 347 (420)
T ss_dssp CCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 69999999664322211 110 00011122334455555555555431 111 45556666667777777
Q ss_pred HHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceeeecC-CCHHHHHH
Q 015230 321 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQH 399 (411)
Q Consensus 321 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~-~t~~~i~~ 399 (411)
|+++.....+.......|+|.+.-+. .+.++.|+++||++.+++ |++++ .++++|+.
T Consensus 348 L~~~g~~~~~~~i~~q~GmF~~~gls------------------~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~ 405 (420)
T 4h51_A 348 LLRLQTPGSWEHVINQIGMFSFLGLS------------------KAQCEYCQNHNIFITVSG----RANMAGLTHETALM 405 (420)
T ss_dssp HHHTTCSSCCTHHHHCCSSEEECCCC------------------HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHH
T ss_pred HHHhCCCCCCCeecCCCceEEecCcC------------------HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHH
Confidence 76653211121123456777665331 233577889999999876 88754 69999999
Q ss_pred HHHHHHHHHHhC
Q 015230 400 TITAAEKVLRQI 411 (411)
Q Consensus 400 ~i~~l~~~~~~~ 411 (411)
+.++|.++++++
T Consensus 406 ~a~aI~~vvr~i 417 (420)
T 4h51_A 406 LAQTINDAVRNV 417 (420)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 165
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=7.1e-24 Score=197.49 Aligned_cols=326 Identities=14% Similarity=0.072 Sum_probs=194.6
Q ss_pred EEEe-ccCCccccccCC-CcHHHHHHHHHHHHcC---C-CCCC-CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHH
Q 015230 37 EYID-YVGSWGPAIIGH-ADDQVLAALGETMKKG---T-SFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109 (411)
Q Consensus 37 ~~~d-~~~~~~~~~~g~-~~~~v~~a~~~~l~~~---~-~~~~-~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al 109 (411)
+++| |.++ +++|+ .||.+.+++.+.++.. . ...| ......++.+++++.++ .+..++++||++|+..++
T Consensus 4 ~~~~~~~~~---~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~-~~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 4 RLRTSFQQT---TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG-MDDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp HHHHHHHTC---SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHH
T ss_pred hhhhHHHhh---cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC-CCcEEEecCcHHHHHHHH
Confidence 4455 4455 78888 7888888887777751 1 1112 23556778888888775 455677789999999988
Q ss_pred HHHHhccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE
Q 015230 110 RLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 186 (411)
Q Consensus 110 ~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~ 186 (411)
+.+.. .+++++|+.++.+|..... .....|..+..++. ..+. -|+++++++ .+ +++
T Consensus 80 ~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~-------------~d~~~l~~~----~~-~~~ 138 (357)
T 3lws_A 80 RIWSD-ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA--ADRL-------------MTLDEIKAL----PD-IAC 138 (357)
T ss_dssp HHHHH-HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC--TTSC-------------CCHHHHHTC----CS-CSE
T ss_pred HHHhh-cCCCcEEEecccceeeeeccchhhhccCcEEEEecC--CCCC-------------cCHHHHhcC----cC-cce
Confidence 75432 2222255555555432221 12223333333221 1111 188888765 22 566
Q ss_pred EEEcccCCCC-CccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc--ccccCccccc-cCCCcchhhhhhhccCCccccc
Q 015230 187 IILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEY-FGVTPDLTTLGKIIGGGLPVGA 261 (411)
Q Consensus 187 vi~~~~~~~~-G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~--~~g~~~~~~~-~~~~~d~~~~sK~~~~G~~~g~ 261 (411)
+++++++|++ |. ..+.+.+++|.++|++||++||+||+|. +. ..+.... .. ...+.-+.|+||++++. ..|+
T Consensus 139 v~~~~p~np~~G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~~~~d~~~~s~sK~~~~~-~gg~ 215 (357)
T 3lws_A 139 LLLELPQREIGGV-APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-EIAGLFDSIYISFYKGLGGI-AGAI 215 (357)
T ss_dssp EEEESSBGGGTSB-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-HHHTTSSEEEEESSSTTCCS-SCEE
T ss_pred EEEEcccccCCce-eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-HHHhcCCEEEEeccccCCCC-ceEE
Confidence 6666666555 55 4556669999999999999999999986 11 1221111 11 11111245899999541 1288
Q ss_pred ccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE--Eeeecc
Q 015230 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISG 339 (411)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~ 339 (411)
+++++++++.+......+.++....++ .++++.++++... +. ..+..++.+++.+.|+++ +.... ....++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~ 288 (357)
T 3lws_A 216 LAGPAAFCQTARIWKRRYGGDLISLYP-YIVSADYYYELRK-DR-MGQYYEQAKQLAEQFNAL----PGVHTTPEVPVSN 288 (357)
T ss_dssp EEECHHHHHHHHHHHHHTTCCCSCCHH-HHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHTS----TTEEEESSSCSSS
T ss_pred EEcCHHHHHHHHHHHHHhcCCcccchH-HHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhC----CCCeeccCCCcce
Confidence 888998888775311111122222333 3344445665432 33 344567777777777654 32222 134577
Q ss_pred eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---c--ceeee-----cCCCHHHHHHHHHHHHHHH
Q 015230 340 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---E--AGFTS-----LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~--~~~~~-----~~~t~~~i~~~i~~l~~~~ 408 (411)
++|+++... ......++.+.|.++||.+.++.. + .+|++ ...+.+++++++++|.+++
T Consensus 289 ~~~~~~~~~-----------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 289 MFHLHFDGQ-----------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEEEEESC-----------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEEEEecCC-----------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 888888531 112346788999999999998742 1 35553 3468999999999998875
No 166
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.90 E-value=2.8e-23 Score=195.42 Aligned_cols=313 Identities=12% Similarity=0.060 Sum_probs=201.9
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC--CHHHHHHHHHHHhhCCC-----CCEEEEeCChHHHHHHHHHHHHh-ccCCcEEEEE
Q 015230 53 ADDQVLAALGETMKKGTSFGAP--CLLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLARA-FTGRERIIKF 124 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~-----~~~v~~~~~g~~a~~~al~~~~~-~~~~~~vi~~ 124 (411)
.+|++++++.+.+.. +.++ .....++.+++++.++. ++++++|+||++|+..+++.+.. ..+++.|++.
T Consensus 16 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG---HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC---TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 567777776554332 2122 12345666777777652 48999999999999999985421 1456778787
Q ss_pred eC-CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH
Q 015230 125 EG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 125 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
+. .||..........|..+..++..+..+. .|++++++.++. +++++|+++++++++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~-- 155 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYGAQVDVVRPLKIGES-------------VPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD-- 155 (385)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTSC-------------CCHHHHHHHHHH--SCCSEEEEESEETTTTEECC--
T ss_pred cCCcchHHHHHHHHHcCCceEEEecCCCCCC-------------CCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC--
Confidence 55 5554322333344554444433111111 189999999974 25678888888888999888
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHH-HhcC----
Q 015230 204 DFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIME-MVAP---- 274 (411)
Q Consensus 204 ~~l~~i~~l~~~~--~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~-~~~~---- 274 (411)
+++|.++|++| |+++|+||+|+.... .+....+ .+|+ .+++|+++|+..+|++++++++++ .+..
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~ 229 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG 229 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHC
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCC
Confidence 99999999999 999999999972111 1112222 3454 467898875334699988888776 5420
Q ss_pred -CC----------C---cccc----cCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHH-HHHHHhcCCce
Q 015230 275 -AG----------P---MYQA----GTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI-IDAGKKAGHAI 332 (411)
Q Consensus 275 -~~----------~---~~~~----~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 332 (411)
.. . .+.. ...+.+..+++++.++++.+.+ ++++++++++.+++.+.| +++ ++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~ 305 (385)
T 2bkw_A 230 HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----QLTS 305 (385)
T ss_dssp CCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----CCEE
T ss_pred CCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----Ccee
Confidence 00 0 0000 0235677777777778876543 345677777777777777 553 2211
Q ss_pred EE-e----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-----cceeee-cC-----CCHHH
Q 015230 333 CG-G----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-----EAGFTS-LA-----HSSDD 396 (411)
Q Consensus 333 ~~-~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-----~~~~~~-~~-----~t~~~ 396 (411)
.. . ..+.++++.+. . ..++.+.|.++||.+.++.. ..+|++ +. +|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred cccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 11 1 24677888762 1 36788899999999998742 347876 43 69999
Q ss_pred HHHHHHHHHHHHHhC
Q 015230 397 IQHTITAAEKVLRQI 411 (411)
Q Consensus 397 i~~~i~~l~~~~~~~ 411 (411)
+++++++|+++++++
T Consensus 370 i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 370 MKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987653
No 167
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.90 E-value=3.4e-23 Score=200.02 Aligned_cols=348 Identities=13% Similarity=-0.006 Sum_probs=199.6
Q ss_pred CCCEEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH
Q 015230 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 113 (411)
Q Consensus 34 ~g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~ 113 (411)
.|+.|+||.++.++ |++++++.+++..+...........++++++++.+ +.++++||+||++|++.++++++
T Consensus 39 ~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~~gt~A~~~al~~~~ 110 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp GGGCSEECSCCSSC-------SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEEC--CCSHHHHHHHHH
T ss_pred CCCeeEecccCCCc-------HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHh-CcCcEEEcCCcHHHHHHHHHHHh
Confidence 46789999877432 78888998888764322223455567777887777 56899999999999999999875
Q ss_pred hcc----C--C-cEEEEEeCCcCCCchhhhh-hcCCCCcccCCCCCCCCCCCCCCceeecCC-CCHHHHHHHHHcCC-Cc
Q 015230 114 AFT----G--R-ERIIKFEGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GE 183 (411)
Q Consensus 114 ~~~----~--~-~~vi~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~-~~ 183 (411)
..+ + + +.|++. .+|+.+..... ..+......... ..++. .......+ -|++++++++++.. ++
T Consensus 111 ~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 111 KKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIK--EAFDT---GVRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCT--TTTCT---TSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred ccccccCCCCccceEEec--ccccccchhhhhccCcceeecccc--ccccC---CCCCCccCCcCHHHHHHHHHhcCCCc
Confidence 431 3 1 555554 56644322222 222211110000 00000 00000011 18999999998532 36
Q ss_pred EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccc----------c-ccccCc-ccc--c-cCCCcchhh
Q 015230 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGG-AQE--Y-FGVTPDLTT 248 (411)
Q Consensus 184 ~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g----------~-~~g~~~-~~~--~-~~~~~d~~~ 248 (411)
+++|+++++++++|...++.+++++|+++|++||++||+|++|.. . ..|... .+. . ...+..+.+
T Consensus 184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s 263 (467)
T 2oqx_A 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEe
Confidence 889999988887655666778899999999999999999976642 1 112111 000 0 011122457
Q ss_pred hhhhccCCccc-ccccccHH----HHHHhcCCCCcc-cccCCCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 015230 249 LGKIIGGGLPV-GAYGGRRD----IMEMVAPAGPMY-QAGTLSGN-PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321 (411)
Q Consensus 249 ~sK~~~~G~~~-g~~~~~~~----~~~~~~~~~~~~-~~~t~~~~-~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 321 (411)
+||+++. |+ |+++++++ .+..+....... ...+++.. ..++++....++...+++..++..++.+++.+.|
T Consensus 264 ~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L 341 (467)
T 2oqx_A 264 AKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGL 341 (467)
T ss_dssp SSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8998863 54 45566655 333332100000 01122222 2222222222232221235566778888888888
Q ss_pred HHHHHhcCCceEEeeecceEEEEEec--CCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCCC---------------
Q 015230 322 IDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF--------------- 383 (411)
Q Consensus 322 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~--------------- 383 (411)
+++ ++... ...|.++++++.+ .... ........+.+.| .++||.+.+++.
T Consensus 342 ~~~----~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~ 409 (467)
T 2oqx_A 342 EEI----GVVCQ-QAGGHAAFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPC 409 (467)
T ss_dssp HHT----TCCEE-EECSSCEEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCC
T ss_pred HHC----CCeee-cCCceEEEEechhhcccCC-------cccccHHHHHHHHHHhcCceecccccccccccccccccccC
Confidence 875 33222 3457788887742 1110 0111146678888 888999987431
Q ss_pred --cceeeecC---CCHHHHHHHHHHHHHHHHh
Q 015230 384 --EAGFTSLA---HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 --~~~~~~~~---~t~~~i~~~i~~l~~~~~~ 410 (411)
+.+|+++. +|++++++++++|++++++
T Consensus 410 ~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp SCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred ccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 45787544 8999999999999998764
No 168
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.90 E-value=8e-23 Score=192.50 Aligned_cols=282 Identities=14% Similarity=0.106 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+.+++.++ .+++++++||++|++.+++.+ ..++++|++..+.|++.........
T Consensus 63 ~~~~~~~~l~~~la~~~g-~~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 126 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVED-AAFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVF------------- 126 (392)
T ss_dssp TCCHHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTG-------------
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHH-------------
Confidence 356677888999988884 458999999999999999854 4567899999999986443321110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
...+..+..++.+|+++++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+..
T Consensus 127 ---~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 127 ---TGWNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp ---GGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred ---HhcCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01123455666679999999886 47899999999999999988 999999999999999999999732
Q ss_pred cCccccccCCCcchh--hhhhhccC-C-ccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 233 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
+.....+..+|++ |++|.+++ | +++|+++.+ +++.+.+.. .....+...+++.++++...++.+. ...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l~--~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF---LQNGAGAVPGPFDAYLTMRGLKTLV--LRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHHH--HHH
Confidence 1112223345655 59999995 5 789999886 677777652 2233456778888888777665432 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEE------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHH
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 369 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
++..++..++.+.|++. +....+ ++.|.+++|++.. .....+.+.+
T Consensus 267 ~~~~~~~~~l~~~L~~~----~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~------------~~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEH----PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA------------GRTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC------------cHHHHHHHHH
Confidence 55666666666666543 332222 3458899998842 1244577788
Q ss_pred HHHHcCeEeccCCCcc------------------------eeeecCCCHHHHHHHHHHHHHHH
Q 015230 370 GMLEEGVYFAPSQFEA------------------------GFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 370 ~l~~~Gi~v~~~~~~~------------------------~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
.|...|+.+..++... +|++ ...++.+..++.|.+++
T Consensus 331 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlS--vg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 331 KTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLS--VGIEDVADLLDDLKQAL 391 (392)
T ss_dssp HCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEE--CCSSCHHHHHHHHHHHH
T ss_pred hCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEE--eccCCHHHHHHHHHHHh
Confidence 8877788777665322 3333 34456777777777665
No 169
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=1.2e-23 Score=196.07 Aligned_cols=315 Identities=16% Similarity=0.089 Sum_probs=190.5
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
+++| .+|++++++.+.+.. ...++.....++.+++++.++ .+..++++||++|+..+++.+.. .++..+|+.++.
T Consensus 23 ~~~g-~~p~v~~ai~~~~~~--~~~~~~~~~~~l~~~la~~~~-~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 23 RNVG-VLTEALQNIDDNLES--DIYGNGAVIEDFETKIAKILG-KQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp CBHH-HHHHHTTTSCTTCBC--CBTTBSHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred cccC-CCHHHHHHHHhhccc--CcccCCHHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 4444 567787777764332 222356677888888888885 34456778999999999986533 233335555555
Q ss_pred cCCCchh--hh-hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 128 YHGHADP--FL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 128 ~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
+|..... .. ...|..+..++.. .+. -|+++++++ . +++++|++++++|++|....+.+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~ 158 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGTA--NQL-------------LTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFE 158 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSCT--TSC-------------CCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHH
T ss_pred ceeeehhcchHHHhcCceEEecCCc--CCC-------------cCHHHHHhc-c---CCceEEEEEecccCCCcccCCHH
Confidence 5432221 11 2345444333221 111 188888876 2 46677777766655543445566
Q ss_pred HHHHHHHHHHHhCCEEEEecccccc---ccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHHHhcCCCCcc
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 279 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~---~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~~~ 279 (411)
.+++|.++|++||++||+||+|..+ ..+... . .+....|+ .++||+++++.. |++++++++++.+.......
T Consensus 159 ~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~-~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~ 235 (359)
T 3pj0_A 159 ELEKISEYCHEQGISLHLDGARLWEITPFYQKSA-E-EICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRY 235 (359)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCH-H-HHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEECcchhcchhhhCCCH-H-HhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHh
Confidence 6999999999999999999998632 112111 1 11112343 489999986422 66788998888775311111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE--EeeecceEEEEEecCCCCCcchhc
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
.++.+..++.+ +++..+++.. .+..++.+++.+++.+.|+++ +.... ....+.++++.+..
T Consensus 236 ~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~---------- 298 (359)
T 3pj0_A 236 GGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFEN---------- 298 (359)
T ss_dssp TCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESS----------
T ss_pred CCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecC----------
Confidence 22233333443 3344555543 234455677777777777764 32222 12456778887742
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCCC------cceeee-----cCCCHHHHHHHHHHHHHH
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQF------EAGFTS-----LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~~------~~~~~~-----~~~t~~~i~~~i~~l~~~ 407 (411)
+...+...+.+.|.++||.+.++.. ..+|++ ...+.+++++++++|.++
T Consensus 299 -~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 299 -SADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp -CHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred -ccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 1223457899999999999999842 235553 346899999999999875
No 170
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.90 E-value=1.3e-22 Score=191.38 Aligned_cols=311 Identities=14% Similarity=0.056 Sum_probs=202.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 132 (411)
-++++++++.+.++... + ++.....++.+.+++.+ +.+++++++||++|+..+++.+ ...+++.|++..++|++..
T Consensus 18 ~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~al~~~~~~~-~~~~gd~Vl~~~~~~~~~~ 93 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMAL-GIGEGDEVITPSMTWVSTL 93 (393)
T ss_dssp CCHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHH
T ss_pred CCHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHh-CCCcEEEecChHHHHHHHHHHc-CCCCCCEEEeCCCccHhHH
Confidence 35788999999988742 2 24566677777777777 4568999999999999999853 1456788999999998754
Q ss_pred hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 133 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
......|..+..++.... +.. .|++++++.++ +++++|++++ ++|...+ +++|.++
T Consensus 94 -~~~~~~g~~~~~v~~~~~-~~~------------~d~~~l~~~l~---~~~~~v~~~~---~~G~~~~----~~~i~~l 149 (393)
T 1mdo_A 94 -NMIVLLGANPVMVDVDRD-TLM------------VTPEHIEAAIT---PQTKAIIPVH---YAGAPAD----LDAIYAL 149 (393)
T ss_dssp -HHHHHTTCEEEEECBCTT-TCC------------BCHHHHHHHCC---TTEEEECCBC---GGGCCCC----HHHHHHH
T ss_pred -HHHHHCCCEEEEEeccCC-cCC------------CCHHHHHHhcC---CCceEEEEeC---CCCCcCC----HHHHHHH
Confidence 334445554444332211 110 18999998886 3577777764 4677766 9999999
Q ss_pred HHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhh--hhccCCccccccccc-HHHHHHhcCCCCc-------
Q 015230 213 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM------- 278 (411)
Q Consensus 213 ~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~~~~------- 278 (411)
|++||+++|+||+|+ |+ ..+. .++. +|++ |++ |++++| ++|+++.+ +++++.+......
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 999999999999998 44 3222 1222 5665 555 888755 78999875 7777765421110
Q ss_pred ----------c----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCce--EEeeecceEE
Q 015230 279 ----------Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFG 342 (411)
Q Consensus 279 ----------~----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~g~~~~ 342 (411)
+ .+..+..+++.++.+...++.+ ++..++.+++.+++++.|+++..+..... .....+.+++
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 300 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFI 300 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEE
T ss_pred hhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEE
Confidence 0 0001335777777766665543 34556666677777777765411110000 1223455788
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc-------------------------ceeeecC--CCHH
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSLA--HSSD 395 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-------------------------~~~~~~~--~t~~ 395 (411)
+.+.... ...+..++.+.|.++||.+.++..+ .+|++.. +|++
T Consensus 301 v~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~ 370 (393)
T 1mdo_A 301 IRVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTES 370 (393)
T ss_dssp EECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHH
T ss_pred EEecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHH
Confidence 8774200 0112367899999999999886422 3677644 7999
Q ss_pred HHHHHHHHHHHHHHh
Q 015230 396 DIQHTITAAEKVLRQ 410 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~ 410 (411)
++++++++|+++++.
T Consensus 371 ~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 371 DFDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
No 171
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.90 E-value=1.5e-22 Score=192.47 Aligned_cols=313 Identities=13% Similarity=0.076 Sum_probs=187.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----------CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 53 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.+|++++++.+.+.+....+++ .+.++.+.+++++.++ ..+++++ ++|++|++.+++.+ ..+++.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~-~sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQP-NSGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEe-ccHHHHHHHHHHHh--cCCCCE
Confidence 4899999999888542211111 2334455567777776 4444655 45699999999864 456789
Q ss_pred EEEEeCCcCCCchhh--hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
|++.+++|++..... ....|.+....+.+..... ..|++++++.+++. ++++|++++.+ .|.
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~ 177 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDG------------RIDYEKVREIAKKE--KPKLIVCGASA--YAR 177 (417)
T ss_dssp EEEECC----------------CCSEEEEECCCTTS------------SCCHHHHHHHHHHH--CCSEEEECCSS--CCS
T ss_pred EEecccccccccchhhhhhhhcceeeeEeccCCCCC------------CcCHHHHHHHHHhc--CCeEEEECCcc--cCc
Confidence 999999998653311 1222222221111111111 02899999999742 45666665544 377
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCccccccccc-HHHHHHhc
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVA 273 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~-~~~~~~~~ 273 (411)
..+ +++|.++|++||++||+||+|+ |+ ..+.... .. . ..|++ ++||++ +|+|.||++++ +++++.+.
T Consensus 178 ~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-~~-~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 178 VID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS-PF-P-YAHVVSSTTHKTL-RGPRGGIIMTNDEELAKKIN 249 (417)
T ss_dssp CCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC-CT-T-TCSEEEEESSTTT-CSCSCEEEEESCHHHHHHHH
T ss_pred cCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC-cc-c-cceEEEeeCcccc-CCCCeeEEEECCHHHHHHHh
Confidence 777 9999999999999999999984 54 3332110 00 1 23554 667999 56688999887 78877765
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCC
Q 015230 274 PAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGP 349 (411)
Q Consensus 274 ~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 349 (411)
... ..+.+.+.++..+++..+++..... ++++++++++.+++.+.|++. ++.... ...+.++++++....
T Consensus 250 ~~~--~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~ 323 (417)
T 3n0l_A 250 SAI--FPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR----KFKLVSDGTDNHLVLMSFLDRE 323 (417)
T ss_dssp HHH--TTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECTTSS
T ss_pred hhh--CCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CceeccCCCCceEEEEEcccCC
Confidence 311 1222334455666665556654322 456667777777777777763 222111 123557777764221
Q ss_pred CCCcchhcccchHHHHHHHHHHHHcCeEeccCCC----------cceeee------cCCCHHHHHHHHHHHHHHHHh
Q 015230 350 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTS------LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~----------~~~~~~------~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.....+.+.|.++||.+.+... ..+|+. ..++++++++++++|++++++
T Consensus 324 ------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 324 ------------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ------------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 1236788888999999985421 225653 236799999999999998864
No 172
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.90 E-value=1.9e-22 Score=188.75 Aligned_cols=320 Identities=12% Similarity=0.070 Sum_probs=197.7
Q ss_pred CCC-EEEeccCCccccccCCCcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCC--CCEEEEeCChHHHHHHHHH
Q 015230 34 DGN-EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLR 110 (411)
Q Consensus 34 ~g~-~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~v~~~~~g~~a~~~al~ 110 (411)
.|. .++|+..+ .+..-.++++++++. . +..+..+++++++.+++.++. ++++++++||++|+..+++
T Consensus 25 ~g~~~v~~~~~~---~~~~~~~~~v~~a~~----~---~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~ 94 (374)
T 2aeu_A 25 KGRDALYDLSGL---SGGFLIDEKDKALLN----T---YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL 94 (374)
T ss_dssp TCGGGCEECSSC---CCCCCCCHHHHHHHT----S---TTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred cCccceeeeccc---CCCCCCCHHHHHHHH----H---hcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHH
Confidence 354 56676665 222236778888775 2 223345566777777777753 3899999999999999998
Q ss_pred HHHhccCCcEEEEEeCCcCCCchhh--hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEE-E
Q 015230 111 LARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-I 187 (411)
Q Consensus 111 ~~~~~~~~~~vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~-v 187 (411)
.+ +++.|++..++||++.... ....|. .+..+ .|++++++. + +++++ |
T Consensus 95 ~~----~gd~Vl~~~~~y~~~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v 145 (374)
T 2aeu_A 95 AL----KPKKVIHYLPELPGHPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVI 145 (374)
T ss_dssp HH----CCSEEEEECSSSSCCTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEE
T ss_pred hC----CCCEEEEecCCCCccHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEE
Confidence 43 7789999999999865421 122222 22222 388888876 3 35677 8
Q ss_pred EEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCccccccccc
Q 015230 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 188 i~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~ 265 (411)
++++++|++|. +...+++|.++|++||+++|+||+|..+..+...........+|++ |+||+++ |+|+||++++
T Consensus 146 ~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~ 221 (374)
T 2aeu_A 146 ITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGK 221 (374)
T ss_dssp EECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEE
T ss_pred EEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEEC
Confidence 88877777774 2233999999999999999999999644111110000011234544 7999976 4799999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHH----HHHHHHHHHhc----CCceEEeee
Q 015230 266 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYI 337 (411)
Q Consensus 266 ~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~----~~~~~~~~~ 337 (411)
+++++.+.... .....+.++++++++.++++.+. .+..++..++.+.+ ++.|++..... ++.....+.
T Consensus 222 ~~~~~~l~~~~---~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~ 297 (374)
T 2aeu_A 222 KELVDKIYIEG---TKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT 297 (374)
T ss_dssp HHHHHHHHHHH---HTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS
T ss_pred HHHHHHHHHhh---ccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc
Confidence 99988876321 11133568888888888887652 21334455555555 56665543321 222233445
Q ss_pred cceEEEE-EecCCCCCcchhcccchHHHHHHH-HHHHHcCeEeccCCC-----cceeeecCC---CHHHHHHHHHHHHHH
Q 015230 338 SGMFGFF-FTEGPVYNFEDAKKSETTKFARFY-RGMLEEGVYFAPSQF-----EAGFTSLAH---SSDDIQHTITAAEKV 407 (411)
Q Consensus 338 g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~v~~~~~-----~~~~~~~~~---t~~~i~~~i~~l~~~ 407 (411)
|++++.. +... ....+..+++ +.+.++||.+.|+.. +.+|+++.. ++.+++++.+.|+++
T Consensus 298 g~~~~~~~~~~~----------~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 298 GFVIKRVYKDDT----------INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp EEEEEEEESSHH----------HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred eEEEEeeccccc----------ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 5554442 2100 0000112244 455678999988632 357886543 233488999999888
Q ss_pred HHh
Q 015230 408 LRQ 410 (411)
Q Consensus 408 ~~~ 410 (411)
+++
T Consensus 368 l~~ 370 (374)
T 2aeu_A 368 IKM 370 (374)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 173
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1e-22 Score=198.10 Aligned_cols=320 Identities=13% Similarity=0.046 Sum_probs=206.0
Q ss_pred CcHHHHHHHHHHHHcCCC---CCC-----CCHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhcc----C
Q 015230 53 ADDQVLAALGETMKKGTS---FGA-----PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT----G 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~---~~~-----~~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~~----~ 117 (411)
.++.+.+++.+++..... +.+ ..+++.++.+++++.++ . .+++++++||++|+..+++.++... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888888887321 111 14567789999999987 3 5799999999999999998775421 1
Q ss_pred --CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 118 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 118 --~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
++.|++..++|+ .+..+....|..+..++.....+.. |+++++++++ +++++|+++.++++
T Consensus 156 ~~~~~Vi~~~~~h~-~~~~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~p~np 218 (497)
T 3mc6_A 156 ITEPEIIAPVTAHA-GFDKAAYYFGMKLRHVELDPTTYQV-------------DLGKVKKFIN---KNTVLLVGSAPNFP 218 (497)
T ss_dssp CSSCEEEEETTSCH-HHHHHHHHSCCEEEEECBCTTTCSB-------------CTTTTGGGCC---SSEEEEEEETTCTT
T ss_pred CCCceEEEeCCccH-HHHHHHHHcCCeEEEEecCcccCcC-------------CHHHHHHHHh---hCCEEEEEECCCCC
Confidence 256766666655 4555555566655554433211111 7788888776 35788888888888
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc-----c--c--CccccccCCCcchhhhhhhccCCccccccccc
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----A--Y--GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~-----g--~--~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~ 265 (411)
+|.+.+ +++|.++|++||++||+||+|+++ .. | . .+.....+++.-+.+++|++.+|.++|+++++
T Consensus 219 tG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~ 294 (497)
T 3mc6_A 219 HGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYR 294 (497)
T ss_dssp TCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECS
T ss_pred CCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEec
Confidence 999888 999999999999999999999866 32 1 1 12222334433344677988888889999877
Q ss_pred HHHHHHhcC-CCCcccccC-----C--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 266 RDIMEMVAP-AGPMYQAGT-----L--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 266 ~~~~~~~~~-~~~~~~~~t-----~--~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
++.+..... ....+.+++ . +.+....++..++++.+.. +++.++..++.+++++.|++. .+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~g~~~~ 371 (497)
T 3mc6_A 295 NSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IPDLDIM 371 (497)
T ss_dssp SHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTTCEEC
T ss_pred CHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEe
Confidence 665544321 111111111 1 1111222233333443332 556677888888888888773 1222111
Q ss_pred -eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc-ceeee-cCCCHHHHHHHHHHHHHHHHh
Q 015230 335 -GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS-LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 335 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-~~~~~-~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+.++.+.... .+..++.+.|.++||.+..+..+ .+|+. ..+|++++++++++|++++++
T Consensus 372 ~~~~~~~v~~~~~~--------------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 372 GNPRYSVISFSSKT--------------LNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp SCCCSSEEEEECTT--------------TTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred cCCCeeEEEEeCCC--------------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 2345565654321 12478999999999999876543 35553 256899999999999998765
No 174
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.89 E-value=7.4e-23 Score=193.56 Aligned_cols=288 Identities=13% Similarity=0.041 Sum_probs=193.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+++++.++ .+++++++||++|+..+++.+ ..+++.|++.++.|++..........
T Consensus 78 ~~~p~~~~l~~~la~~~g-~~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~------------ 142 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIEG-APAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILP------------ 142 (414)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHH------------
T ss_pred CCChHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHH------------
Confidence 457788999999999884 578999999999999988742 45678899999999874433211100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
..+..+..++.+|+++++++++ +++++|++++++|++|.+.+ +++|.++|++||++||+||+|+..
T Consensus 143 ----~~g~~~~~v~~~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~~--- 208 (414)
T 3ndn_A 143 ----RWGVQTVFVDGDDLSQWERALS---VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFATP--- 208 (414)
T ss_dssp ----HTTCEEEEECTTCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH---
T ss_pred ----HcCcEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 0123456666679999999886 35788888999999999988 999999999999999999999721
Q ss_pred cCccccccCCCcchhhhhhhccC-C-cccccccccHHHHH-HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.......++.+..+.|+||++++ | +++|+++++++.+. .+... ........++..++.+...++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~---~~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKL---MRHTGPAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHH---HHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHH---HHHcCCCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111134555666789999996 7 78999998887665 44311 11112234666666655554433 233455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEE------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..++..++.+.|++. +....+ ++.|.+++|++..... .....+.++.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 666666666666554 322221 3468899999943100 0034567888888
Q ss_pred HHcCeEeccCCCcc---------------------------eeeecCCCHHHHHHHHHHHHHHH
Q 015230 372 LEEGVYFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 372 ~~~Gi~v~~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~~~~ 408 (411)
...++.+..|+... +|++. ..|+.+.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv--G~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISV--GLEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEEC--CSSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEe--CcCCHHHHHHHHHHhh
Confidence 87788777765332 33333 3466788888888776
No 175
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=1.3e-21 Score=184.24 Aligned_cols=310 Identities=13% Similarity=0.074 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
+|++++++.++++.+....+......++.+.+++.++.. +.+++++|++|+..+++.+ ...+++.|++..++|++...
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~al~~~l~~l-~~~~gd~Vi~~~~~~~~~~~ 93 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA-HALAVTNGTHALELALQVM-GVGPGTEVIVPAFTFISSSQ 93 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCccHHHHH
Confidence 489999999999874222234556678888888888644 4555556799999999853 13556789999999987654
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. ....|..+..++.....+.. |++++++.++ +++++|+ |+ +++|.+.+ +++|.++|
T Consensus 94 ~-~~~~g~~~~~v~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~--~~-n~tG~~~~----l~~i~~la 149 (388)
T 1b9h_A 94 A-AQRLGAVTVPVDVDAATYNL-------------DPEAVAAAVT---PRTKVIM--PV-HMAGLMAD----MDALAKIS 149 (388)
T ss_dssp H-HHHTTCEEEEECBCTTTCCB-------------CHHHHHHHCC---TTEEEEC--CB-CGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCCcCCC-------------CHHHHHHhcC---cCceEEE--Ee-CCccCcCC----HHHHHHHH
Confidence 3 33445444443322111111 8999998886 3567666 44 44677777 99999999
Q ss_pred HHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh--hhccCCcccccccccHH-H--HHHhcCCCC--------c
Q 015230 214 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRD-I--MEMVAPAGP--------M 278 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~~~-~--~~~~~~~~~--------~ 278 (411)
++||++||+||+|+ |+ ..|.. ...++ ..++.||| |+++| .++|+++++++ + ++.+..... .
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 99999999999997 34 32221 12222 34566777 55554 48999987765 5 455421000 0
Q ss_pred c----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-------eeecceEEEEEec
Q 015230 279 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------GYISGMFGFFFTE 347 (411)
Q Consensus 279 ~----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~g~~~~~~~~~ 347 (411)
+ .+.++..+++.++++...++.+ ++.+++.+++.+++.+.|+++ +..... ...++++++.+..
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSHYMAMFRIPG 299 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCCSEEEEECTT
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccceEEEEEEeCC
Confidence 0 1222345666666655544433 335666777777777777654 222111 1236788887732
Q ss_pred CCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc---------------------------------ceeee--cCC
Q 015230 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTS--LAH 392 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~---------------------------------~~~~~--~~~ 392 (411)
. ...+..++.+.|.++||.+.++..+ .+|++ ..+
T Consensus 300 ~-----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 368 (388)
T 1b9h_A 300 L-----------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLL 368 (388)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGG
T ss_pred c-----------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCC
Confidence 1 1124578999999999999765321 14554 356
Q ss_pred -CHHHHHHHHHHHHHHHHh
Q 015230 393 -SSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 393 -t~~~i~~~i~~l~~~~~~ 410 (411)
|++|++++++.|++++++
T Consensus 369 ~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 369 AGEPELHATAEIIADAVAR 387 (388)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 899999999999998875
No 176
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.89 E-value=4.1e-22 Score=187.56 Aligned_cols=281 Identities=14% Similarity=0.096 Sum_probs=185.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+++....++.+.+++.++..+.++ +++|++|+..+++.+ ..+++.|++..+.|++...........
T Consensus 49 ~~~~~~~~l~~~la~~~~~~~~i~-~~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~----------- 114 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGAGAVL-TNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR----------- 114 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTT-----------
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE-eCCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHh-----------
Confidence 345666778888888776444444 566799999999864 456788999999998643322111110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-cc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~ 231 (411)
.+..+..++.+|++++++.++. ++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++ ..
T Consensus 115 -----~g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 115 -----GCYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp -----TSCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred -----cCCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1224555666699999999983 5788889999999999988 999999999999999999999866 32
Q ss_pred ccCccccccCCCcchhhhhhhccC-Cccc-ccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
. . . .++.+..+.|++|++++ |.++ |++++++ ++++.+.. .....+...++++++++.+.++.+ ++..+
T Consensus 183 ~-~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 183 N-P--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp C-G--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred C-c--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 1 1 1 23444445589999984 6776 8888875 77777753 222224557888877776665432 23345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceE------------------EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH
Q 015230 309 YLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (411)
+..++.+.+.+.|+++ +.... .++.|.++.+++.+. ...+.+.
T Consensus 254 ~~~~~~~~l~~~l~~~----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 314 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQ----PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------------EQTLRRF 314 (386)
T ss_dssp HHHHHHHHHHHHHTTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---------------HHHHHHH
Confidence 5566666666666543 21111 123477888877321 2567788
Q ss_pred HHHcCeEeccC--C----------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 371 MLEEGVYFAPS--Q----------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 371 l~~~Gi~v~~~--~----------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
|.++||++... + .+.+|++ ...++++++.+.+.|+++
T Consensus 315 l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp HHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 88899988741 1 2356774 444566666666666654
No 177
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.89 E-value=8.6e-22 Score=190.16 Aligned_cols=315 Identities=16% Similarity=0.128 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHHHcCCCCCC------CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc--cCC----
Q 015230 51 GHADDQVLAALGETMKKGTSFGA------PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--TGR---- 118 (411)
Q Consensus 51 g~~~~~v~~a~~~~l~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~--~~~---- 118 (411)
++.+|++.+++.+.......+.. ..++..++++++++.++-...+++++||++|+..++++++.+ .++
T Consensus 76 ~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~ 155 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRT 155 (474)
T ss_dssp CCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 35678888888776332222111 125678899999998863335678899999999988776543 122
Q ss_pred -cEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 119 -ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 119 -~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+.|++.. .+|+.+..+....|..+..++.... +.. |+++++++++ +++++|++++.+ ++|
T Consensus 156 r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~~-~~~-------------d~~~L~~~i~---~~t~~v~~~~pn-~~G 216 (474)
T 1wyu_B 156 RRVVLVPD-SAHGSNPATASMAGYQVREIPSGPE-GEV-------------DLEALKRELG---PHVAALMLTNPN-TLG 216 (474)
T ss_dssp CCEEEEET-TSCTHHHHHHHHTTCEEEEECBCTT-SSB-------------CHHHHHHHCS---TTEEEEEECSSC-TTS
T ss_pred CCEEEEeC-CcChhhHHHHHHCCCEEEEecCCCC-CCc-------------CHHHHHHhhC---CCceEEEEECCC-CCc
Confidence 3677766 5556666666666665555433211 111 8999999886 357888887754 477
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccC-----CcccccccccHHHH
Q 015230 198 FI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-----GLPVGAYGGRRDIM 269 (411)
Q Consensus 198 ~~-~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~-----G~~~g~~~~~~~~~ 269 (411)
.+ .+ +++|.++|++||+++|+||+|+....|.. ....++ +|++ +++|+|++ |+++|+++++++++
T Consensus 217 ~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~ 289 (474)
T 1wyu_B 217 LFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLA 289 (474)
T ss_dssp CCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGGG
T ss_pred ccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHHH
Confidence 77 35 99999999999999999999963322211 112233 4654 56899862 36899999998887
Q ss_pred HHhcCC-----C-Cc----------ccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC
Q 015230 270 EMVAPA-----G-PM----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 330 (411)
Q Consensus 270 ~~~~~~-----~-~~----------~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (411)
+.+... . .. ....++..++++++++.+.++.+.. ++..++..++.+++.+.|+++ .+..
T Consensus 290 ~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~~~ 367 (474)
T 1wyu_B 290 PYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYRV 367 (474)
T ss_dssp GGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCBC
T ss_pred HhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcEe
Confidence 766410 0 00 0112344677888888888765433 444777888888888888775 2222
Q ss_pred ceEEeeecce--EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC-----CcceeeecC--CCHHHHHHHH
Q 015230 331 AICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLA--HSSDDIQHTI 401 (411)
Q Consensus 331 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~--~t~~~i~~~i 401 (411)
. .+.+.+ +++.+ . .......+.+.|.++||.+.... .+.+|+++. +|++++++++
T Consensus 368 ~---~~~~~~~~~~~~~-~------------~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~ 431 (474)
T 1wyu_B 368 P---YDGPSMHEFVAQP-P------------EGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFA 431 (474)
T ss_dssp S---SCSSCCSCEEEBC-S------------TTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHH
T ss_pred c---CCCCcceEEEEEc-C------------CCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHH
Confidence 1 111222 34433 1 01123678999999999863221 245777654 4899999999
Q ss_pred HHHHHHHH
Q 015230 402 TAAEKVLR 409 (411)
Q Consensus 402 ~~l~~~~~ 409 (411)
++|+++++
T Consensus 432 ~~L~~~~~ 439 (474)
T 1wyu_B 432 EAMGALLK 439 (474)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998875
No 178
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.89 E-value=6.8e-22 Score=189.56 Aligned_cols=317 Identities=15% Similarity=0.072 Sum_probs=189.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC--------CCCH--HHHHHH-HHHHhhCCCCCEEEE-eCChHHHHHHHHHHHHhccCCcE
Q 015230 53 ADDQVLAALGETMKKGTSFG--------APCL--LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~--------~~~~--~~~~l~-~~l~~~~~~~~~v~~-~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.+|++++++.+.+.+....+ +... ..++++ +++++.++ .+.+.+ ++||++|++.+++.+ ..+++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g-~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~ 133 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG-AEFANVQPHSGAQANAAVLHAL--MSPGER 133 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC-CCceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 59999999998886421111 1111 225566 78888774 444555 889999999999853 446788
Q ss_pred EEEEeCCcCCCchhh--hhhcCCCCcccCCCCC-CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEE-cccCCCC
Q 015230 121 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNS 196 (411)
Q Consensus 121 vi~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~-~~~~~~~ 196 (411)
|++.+++|++..... ....|......+.+.. ... ..|++++++.++.. +++++++ .|+++++
T Consensus 134 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~ 199 (447)
T 3h7f_A 134 LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATH------------LIDMDAVRATALEF--RPKVIIAGWSAYPRV 199 (447)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTC------------SCCHHHHHHHHHHH--CCSEEEEECSSCCSC
T ss_pred EEecCcccccccchhhhhhhcCCeeEEEEcCcCcccC------------CcCHHHHHHHHHhc--CCeEEEEcCCCCCCc
Confidence 999999987733211 1222222221111111 000 12899999998643 3446556 4555443
Q ss_pred CccCCCHHHHHHHHHHHHHhCCEEEEeccc-ccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 197 GFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 197 G~~~~~~~~l~~i~~l~~~~~~~li~De~~-~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
+ + +++|+++|++||++||+||+| .|+ ..|..... ..+.+.-+.|+||+++ |+|.|++++++++++.+..
T Consensus 200 ~---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~-~~~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 200 L---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP-VPHADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS 270 (447)
T ss_dssp C---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS-TTTCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred c---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC-CCCCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence 3 4 999999999999999999998 465 44432111 0112222447899995 6789999998887776653
Q ss_pred CCCcccccCCC-CCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe--eecceEEEEEecC
Q 015230 275 AGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEG 348 (411)
Q Consensus 275 ~~~~~~~~t~~-~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~~ 348 (411)
. ....+++ .+...++++.+++..... ++.++++.++.+++.+.|++.....+...... ..+.++++++...
T Consensus 271 ~---~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (447)
T 3h7f_A 271 A---VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS 347 (447)
T ss_dssp H---HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTS
T ss_pred h---cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCC
Confidence 1 1111222 233334444445544332 45667788888888888876521111111111 2355777776432
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEec----cC------CCcceeee------cCCCHHHHHHHHHHHHHHHHh
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS------QFEAGFTS------LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~------~~~~~~~~------~~~t~~~i~~~i~~l~~~~~~ 410 (411)
. .....+.+.|.++||++. ++ ....+|+. ..++++++++++++|.+++++
T Consensus 348 ~------------~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 348 P------------LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp S------------CCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred C------------CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 1 112566777778899998 43 12236663 237899999999999998764
No 179
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.89 E-value=7.1e-22 Score=185.16 Aligned_cols=308 Identities=13% Similarity=0.082 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHh-ccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~-~~~~~~vi~~~~~~~~~ 131 (411)
.+|++++++.+.++... .++.....++.+.+++.++ .+++++++||++|+..+++.+.. ..+++.|++..++|++.
T Consensus 11 ~~~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~-~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFLG-VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT 87 (375)
T ss_dssp CCHHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH
T ss_pred CCHHHHHHHHHHHHcCc--ccCChHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH
Confidence 68999999999998642 2345666788888888774 44999999999999999985411 34567899999999875
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
... ....|..+..++......+ |++++++.++ +++++|++.+. +|.+.+ +++|.+
T Consensus 88 ~~~-~~~~g~~~~~~~~~~~~~~--------------d~~~l~~~i~---~~~~~v~~~~~---tG~~~~----l~~i~~ 142 (375)
T 2fnu_A 88 ANM-LLESGYTPVFAGIKNDGNI--------------DELALEKLIN---ERTKAIVSVDY---AGKSVE----VESVQK 142 (375)
T ss_dssp HHH-HHHTTCEEEECCBCTTSSB--------------CGGGSGGGCC---TTEEEEEEECG---GGCCCC----HHHHHH
T ss_pred HHH-HHHCCCEEEEeccCCCCCC--------------CHHHHHhhcC---cCceEEEEeCC---cCCccC----HHHHHH
Confidence 543 3334544444332111111 7788877765 35666554433 788877 999999
Q ss_pred HHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhh--hhccCCcccccccc-c-HHHHHHhcCCCCcc-------
Q 015230 212 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGPMY------- 279 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~-~-~~~~~~~~~~~~~~------- 279 (411)
+|++||+++|+||+|+.. .... .....++ +.++.|+| |++++| +|++++ + +++++.+.......
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~~-~~~~~~~-~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQN-KKVGGFA-LASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKDFF 218 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEETT-EETTSSS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESSSS
T ss_pred HHHHcCCEEEEECccccCCeECC-eeccccC-CeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCcccccc
Confidence 999999999999999733 1111 0111112 24556888 999754 788766 3 66766554211100
Q ss_pred ------cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe------eecceEEEEEec
Q 015230 280 ------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG------YISGMFGFFFTE 347 (411)
Q Consensus 280 ------~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~g~~~~~~~~~ 347 (411)
.+.++..+++.++++...++.+ ++..++.+++.+++.+.|+++ +...... ..+.++++.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (375)
T 2fnu_A 219 EGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQ 292 (375)
T ss_dssp CEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECG
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCCcceEEEEEEeCc
Confidence 1112355666666655443322 455667777777777777653 2111111 123445666632
Q ss_pred CCCCCcchhcccchH-HHHHHHHHHHHcCeEeccCC-----------------C--------cceeeec--CCCHHHHHH
Q 015230 348 GPVYNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTSL--AHSSDDIQH 399 (411)
Q Consensus 348 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~v~~~~-----------------~--------~~~~~~~--~~t~~~i~~ 399 (411)
. .. +...+.+.|.++||.+.... . ..+|+++ .+|++++++
T Consensus 293 ~------------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~ 360 (375)
T 2fnu_A 293 K------------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQN 360 (375)
T ss_dssp G------------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred c------------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHH
Confidence 1 11 34678999999999998321 0 2477754 459999999
Q ss_pred HHHHHHHHHHh
Q 015230 400 TITAAEKVLRQ 410 (411)
Q Consensus 400 ~i~~l~~~~~~ 410 (411)
++++|++++++
T Consensus 361 ~~~~l~~~~~~ 371 (375)
T 2fnu_A 361 IAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 180
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.89 E-value=1.8e-21 Score=183.61 Aligned_cols=322 Identities=15% Similarity=0.060 Sum_probs=198.5
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
-+|++++++.+.++.+ +.. ......++.+.+++.+ +.+++++++||++|+..+++.+ ...+++.|++..++|++.
T Consensus 10 ~~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~l-~~~~gd~Vl~~~~~~~~~ 85 (394)
T 1o69_A 10 MGGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVA-GVKQDDIVLASSFTFIAS 85 (394)
T ss_dssp --CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCGGG
T ss_pred CCHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHc-CCCCCCEEEECCCccHHH
Confidence 3567889998888763 221 1244566777777666 4589999999999999999853 145667899999999976
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
..... ..|..+..++.. .... .|++++++.++..++++++|++++ ++|...+ +++|.+
T Consensus 86 ~~~~~-~~g~~~~~v~~~--~~~~------------~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~ 143 (394)
T 1o69_A 86 VAPIC-YLKAKPVFIDCD--ETYN------------IDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVE 143 (394)
T ss_dssp THHHH-HTTCEEEEECBC--TTSS------------BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHH
T ss_pred HHHHH-HcCCEEEEEEeC--CCCC------------cCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHH
Confidence 54443 345444443322 1110 189999999985322467777765 4566666 999999
Q ss_pred HHHHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh--hhccCCccccccccc-HHHHHHhcCCCCccc------
Q 015230 212 ITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPMYQ------ 280 (411)
Q Consensus 212 l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~~~~~~------ 280 (411)
+|++||+++|+||+|+ |+ ..+.... .+ ..+|+.++| |.++ |.++|+++++ +++++.+........
T Consensus 144 l~~~~~~~li~Dea~~~g~~~~~~~~~--~~-~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~ 219 (394)
T 1o69_A 144 ICKENDIVLIEDAAEALGSFYKNKALG--TF-GEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHY 219 (394)
T ss_dssp HHHHTTCEEEEECTTCTTCEETTEETT--SS-SSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSC
T ss_pred HHHHcCCEEEEECcCcccceeCCcccc--cc-cCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCccc
Confidence 9999999999999998 66 4332110 11 136777774 6555 4589999885 787776643111110
Q ss_pred -----ccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-eEEEEEecCC-----
Q 015230 281 -----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-MFGFFFTEGP----- 349 (411)
Q Consensus 281 -----~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~----- 349 (411)
+..+..+++.++.+...++.+ ++.+++.+++.+++.+.|+++ .+..........++ ++++.+....
T Consensus 220 ~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 220 EHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCC
T ss_pred cccccCcccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccc
Confidence 011124566666665544433 336677888888888888765 21111100001122 4566653110
Q ss_pred -----CCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcc------------------------eee--ecCCCHHHHH
Q 015230 350 -----VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA------------------------GFT--SLAHSSDDIQ 398 (411)
Q Consensus 350 -----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~------------------------~~~--~~~~t~~~i~ 398 (411)
...+.. ........++.+.|.++||.++++..+. +++ ...+|++|++
T Consensus 297 ~~~~~~~~~~~--~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~ 374 (394)
T 1o69_A 297 CQKDINISQKN--ITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY 374 (394)
T ss_dssp CCEEEECCCCC--CCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccccccccc--cccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence 000000 0001245789999999999998873220 111 2347999999
Q ss_pred HHHHHHHHHHH
Q 015230 399 HTITAAEKVLR 409 (411)
Q Consensus 399 ~~i~~l~~~~~ 409 (411)
+++++|++++.
T Consensus 375 ~~~~~l~~~~~ 385 (394)
T 1o69_A 375 EISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 181
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.89 E-value=1.1e-22 Score=194.81 Aligned_cols=286 Identities=11% Similarity=0.089 Sum_probs=185.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++++++++.++ .++++++++|++|+..+++ ...+++.|++.++.|++........
T Consensus 131 g~~~~~~l~~~la~~~g-~~~~i~~~sGt~al~~~l~---~~~~Gd~Vi~~~~~y~~~~~~~~~~--------------- 191 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDK-ADRAFCFTSGMAALSAVTH---LIKNGEEIVAGDDVYGGSDRLLSQV--------------- 191 (464)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHT---------------
T ss_pred CCHHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHH---HhCCCCEEEEECCCchhHHHHHHHH---------------
Confidence 35678899999999885 4588888999999988775 4456788999999988643211000
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
....+..+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+. |.
T Consensus 192 -~~~~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~---g~ 260 (464)
T 1ibj_A 192 -VPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS---PV 260 (464)
T ss_dssp -SGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC---TT
T ss_pred -HHHcCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc---cc
Confidence 011123455566668999998886 46899999999999999887 99999999999999999999972 21
Q ss_pred Cc-cccccCCCcchhhhhhhccC--Cccccccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 234 GG-AQEYFGVTPDLTTLGKIIGG--GLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 234 ~~-~~~~~~~~~d~~~~sK~~~~--G~~~g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
.. ..+ ++.+.-+.++||++++ |+++|+++++ +++++.+.. .......+.++++++++.++++.+.. ..++
T Consensus 261 ~~~~~~-~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~---~~~~~g~~~~~~~~~a~~~al~~~~~--r~~~ 334 (464)
T 1ibj_A 261 LSRPLE-LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQNSEGSGLAPFDCWLCLRGIKTMAL--RIEK 334 (464)
T ss_dssp TCCGGG-TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---HHHHTTCBCCHHHHHHHHHHHTTHHH--HHHH
T ss_pred cCChhh-cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH---HHHhcCCCCCHHHHHHHHhchhhHHH--HHHH
Confidence 11 111 2333334489999985 7899999887 477776652 11112344577888777776643211 1122
Q ss_pred HHHHHHHHHHHHHHHH----------HhcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 310 LNKITGELTQGIIDAG----------KKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~----------~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
..++...+.+.+++.. ..++... ..++.|.++++++.+ ......+.+.|...|
T Consensus 335 ~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~~~~~L~~~g 401 (464)
T 1ibj_A 335 QQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS-------------VALSKHLVETTKYFS 401 (464)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC-------------HHHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC-------------HHHHHHHHHhcCcce
Confidence 2222233333333210 0111100 112357788888721 122345777777778
Q ss_pred eEeccCC---------------------------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 376 VYFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 376 i~v~~~~---------------------------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.+..+. ...+|++... +++++++++|++++++
T Consensus 402 i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 402 IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence 8776653 2347887666 8999999999999875
No 182
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.88 E-value=2.4e-21 Score=184.64 Aligned_cols=307 Identities=12% Similarity=0.052 Sum_probs=193.8
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCc
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~ 132 (411)
.++++++++.+.++.+ .|........++.+.+++.+ +.+++++|+||++|+..+++.+ ..++.|++.+++|++..
T Consensus 30 ~p~~~~~a~~~~~~~~-~y~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~l~~l---~~gd~Vlv~~~~~~~~~ 104 (424)
T 2po3_A 30 DRARLYERLDRALDSQ-WLSNGGPLVREFEERVAGLA-GVRHAVATCNATAGLQLLAHAA---GLTGEVIMPSMTFAATP 104 (424)
T ss_dssp CHHHHHHHHHHHHHHT-CCSSSCHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHH---TCCSEEEEESSSCTHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc---CCCCEEEECCCccHHHH
Confidence 4788999999988764 23221356677777777777 4579999999999999999864 24588999999998755
Q ss_pred hhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHH
Q 015230 133 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 212 (411)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l 212 (411)
. .....|..+..++.... +.. -|++++++.++ +++++|++++ ++|...+ +++|.++
T Consensus 105 ~-~~~~~G~~~~~v~~~~~-~~~------------~d~~~l~~~i~---~~~~~v~~~~---~tG~~~~----l~~i~~l 160 (424)
T 2po3_A 105 H-ALRWIGLTPVFADIDPD-TGN------------LDPDQVAAAVT---PRTSAVVGVH---LWGRPCA----ADQLRKV 160 (424)
T ss_dssp H-HHHHTTCEEEEECBCTT-TSS------------BCHHHHGGGCC---TTEEEEEEEC---GGGCCCC----HHHHHHH
T ss_pred H-HHHHcCCEEEEEecCCC-cCC------------cCHHHHHHhhC---cCCcEEEEEC---CCCCcCC----HHHHHHH
Confidence 4 33444554444332211 110 07888887775 3577777643 4676666 9999999
Q ss_pred HHHhCCEEEEecccc-cc-ccccCccccccCCCcch--hhhh--hhccCCccccccccc-HHHHHHhcCCCCc-------
Q 015230 213 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTLG--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM------- 278 (411)
Q Consensus 213 ~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~--~~~s--K~~~~G~~~g~~~~~-~~~~~~~~~~~~~------- 278 (411)
|++||++||+||+|+ |+ ..+.. .+..+|+ .||| |++++ +++|+++++ +++++.+......
T Consensus 161 a~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~ 234 (424)
T 2po3_A 161 ADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARIRALHNFGFDLPGG 234 (424)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHHBTTTTCTTC
T ss_pred HHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 999999999999998 66 43321 1112354 4676 66654 789999888 7877766421110
Q ss_pred --ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eec-----ceEEEEEecCCC
Q 015230 279 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS-----GMFGFFFTEGPV 350 (411)
Q Consensus 279 --~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g-----~~~~~~~~~~~~ 350 (411)
..+.++..++++++++...++.+ ++..++.+++.+++.+.|+++ +...... ..| .++++.+.+..
T Consensus 235 ~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~i~~~~~~- 307 (424)
T 2po3_A 235 SPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL----PGVLVADHDRHGLNNHQYVIVEIDEAT- 307 (424)
T ss_dssp CTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC----TTEEECCGGGGSCCCCCCEEEEECHHH-
T ss_pred ccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCccccCCCCCCccccEEEEEEECCcc-
Confidence 01112244566666666554433 234555555555665555432 2221111 111 34445553100
Q ss_pred CCcchhcccchHHHHHHHHHHHHcCeEeccCCC-c-----------------c-------eeee--cCCCHHHHHHHHHH
Q 015230 351 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------A-------GFTS--LAHSSDDIQHTITA 403 (411)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~-----------------~-------~~~~--~~~t~~~i~~~i~~ 403 (411)
...+..++.+.|.++||.+.+... + . ++++ ..+|++++++++++
T Consensus 308 ---------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~ 378 (424)
T 2po3_A 308 ---------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADL 378 (424)
T ss_dssp ---------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHH
T ss_pred ---------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHH
Confidence 011236788899999999987321 1 0 5565 77899999999999
Q ss_pred HHHHHHh
Q 015230 404 AEKVLRQ 410 (411)
Q Consensus 404 l~~~~~~ 410 (411)
|.+++++
T Consensus 379 L~~~~~~ 385 (424)
T 2po3_A 379 LRLCATR 385 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988754
No 183
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.88 E-value=2e-21 Score=183.74 Aligned_cols=283 Identities=13% Similarity=0.012 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 151 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 151 (411)
....+++.+.+++.++ .+++++++||++|+..+++.. ..+++.|++.++.|++.... .....|.
T Consensus 61 ~~~~~~l~~~ia~~~g-~~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---------- 127 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEK-TEACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI---------- 127 (404)
T ss_dssp CHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------
T ss_pred ChHHHHHHHHHHHHhC-CCcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC----------
Confidence 4555677777777774 458888999999999999743 34567899999998864332 1222222
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-hCCEEEEeccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFR 230 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-~~~~li~De~~~g~~ 230 (411)
.+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+++.
T Consensus 128 ---------~~~~v~~~d~~~l~~~i~---~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 128 ---------QVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp ---------EEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred ---------EEEEECCCCHHHHHHhcC---CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 345555557888888876 36888889888888898887 9999999999 999999999998651
Q ss_pred cccCccccccCCCcchhhhhhhcc-CCccc-ccccccHHHHH-HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 231 LAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 231 ~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~-g~~~~~~~~~~-~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
.... . .++.+..+.|+||+++ +|+|+ |++++++++++ .+......+. ....++++++++.++++.+ +...
T Consensus 192 ~~~~--~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~--g~~~~~~~~~~~~~~l~~~--~~~~ 264 (404)
T 1e5e_A 192 ITNP--V-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDIT--GSVISPHDAWLITRGLSTL--NIRM 264 (404)
T ss_dssp TCCG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCC--CCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred hCCc--c-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHhHhHH--HHHH
Confidence 1111 1 1344444558999999 48997 99999998887 7764322110 2456788888877776532 2234
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCc------e----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHH
Q 015230 308 EYLNKITGELTQGIIDAG----KKAGHA------I----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~----~~~~~~------~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 373 (411)
++..++...+.+.+++.. ..++.. . ..++.|.++.+++.+ . .....+.+.+
T Consensus 265 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-------------~--~~~~~~~l~~ 329 (404)
T 1e5e_A 265 KAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-------------G--FEGAKKLLDN 329 (404)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-------------H--HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-------------C--HHHHHHHHHh
Confidence 445555555555555431 000100 0 012347777777732 1 1345566677
Q ss_pred cCeEeccC--C----------------------------CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 374 EGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 374 ~Gi~v~~~--~----------------------------~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.||++... + .+.+|+++.. ++++++++.|+++++.
T Consensus 330 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 330 LKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDA 394 (404)
T ss_dssp CSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHH
Confidence 78854331 1 2457887766 8899999999888764
No 184
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.88 E-value=1.6e-21 Score=183.50 Aligned_cols=282 Identities=16% Similarity=0.101 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhh---hhhcCCCCcccCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 149 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~---~~~~g~~~~~~~~~ 149 (411)
+..+...++.+++++.++. +++++++||++|+..+++.+ ..+++.|++..+.|++..... ....|.
T Consensus 56 ~~~~~~~~l~~~la~~~g~-~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~-------- 124 (389)
T 3acz_A 56 LGNPTVEQFEEMVCSIEGA-AGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFTHWLPRFGI-------- 124 (389)
T ss_dssp TCCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHHHHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC--------
Confidence 3467778899999888853 47788888999999998743 456788999999998754432 122222
Q ss_pred CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 150 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.+..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++
T Consensus 125 -----------~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~ 186 (389)
T 3acz_A 125 -----------EVDLIDTSDVEKVKAAWK---PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSP 186 (389)
T ss_dssp -----------EEEEECTTCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT
T ss_pred -----------EEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 344455568999988876 36889999999999999998 999999999999999999999844
Q ss_pred ccccCccccccCCCcchh--hhhhhccC-Cccc-ccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC
Q 015230 230 RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304 (411)
Q Consensus 230 ~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~-g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~ 304 (411)
..+.. .+..+|++ |++|++++ |.|+ |++++++ ++++.+... ......+.++..++++.+.++.+ +
T Consensus 187 ~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~---~~~~g~~~~~~~~~~~~~~l~~l--~ 256 (389)
T 3acz_A 187 CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFY---RKDAGSLMAPMDAFLCARGMKTL--P 256 (389)
T ss_dssp TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHH---HHhcCCCCCHHHHHHHHcCccHH--H
Confidence 11111 12345655 89999995 7887 9998888 888777531 11113345777777777666533 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH----------hcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHH
Q 015230 305 GTYEYLNKITGELTQGIIDAGK----------KAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (411)
...++..++...+.+.|++... .++... ..++.|.++.|++.+ ...+.+.
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----------------~~~~~~~ 320 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----------------FEAAKKL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC----------------HHHHHHH
Confidence 2334555566666666655310 000000 012347788887731 1455666
Q ss_pred HHHcCeEeccC--C----------------------------CcceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 371 MLEEGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 371 l~~~Gi~v~~~--~----------------------------~~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
+.+.|+++... + .+.+|++... ++.+.+++.|.++++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--~~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI--ENVDDIIADLKQALELW 389 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHTCC
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHhhC
Confidence 77778877552 1 1345665444 37888888888887653
No 185
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.88 E-value=6.9e-22 Score=188.11 Aligned_cols=312 Identities=11% Similarity=0.052 Sum_probs=181.4
Q ss_pred CcHHHHHHHHHHHHcCC--CCC------C--CCHHHH-HHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCCcE
Q 015230 53 ADDQVLAALGETMKKGT--SFG------A--PCLLEN-VLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 120 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~--~~~------~--~~~~~~-~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~~~ 120 (411)
.||++++++.+++.+.. .+. . ..+..+ ...+++++.++ ..+.+ ++++|++|+..+++.+ ..+++.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~--~~~gd~ 118 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTAL--LQPGDT 118 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHh--cCCCCE
Confidence 69999999999885422 111 0 112333 34467777776 33444 3466799999998753 446678
Q ss_pred EEEEeCCcCCCchhhh--hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCc
Q 015230 121 IIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198 (411)
Q Consensus 121 vi~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~ 198 (411)
|++..+.|++...... ...|..+...+.+..... ..|+++++++++++ ++++|++++.++ |.
T Consensus 119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~ 182 (420)
T 3gbx_A 119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESG------------KIDYDEMAKLAKEH--KPKMIIGGFSAY--SG 182 (420)
T ss_dssp EEEEEEC------------CHHHHSEEEEEEECTTC------------SCCHHHHHHHHHHH--CCSEEEECCTTC--CS
T ss_pred EEecchhhcceeccchhhhhcccceeEEeccCCccC------------CcCHHHHHHHHHhc--CCeEEEEecCcc--CC
Confidence 8888777765321111 111211111111100100 12899999999853 466777754222 34
Q ss_pred cCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcchh--hhhhhccCCcccccccccH---HHHHH
Q 015230 199 IAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRR---DIMEM 271 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~---~~~~~ 271 (411)
..+ +++|+++|++||++||+||+|+ |+ +.+..... .. .+|++ |+||+++ |.+.|++++++ ++.+.
T Consensus 183 ~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 183 VVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKK 254 (420)
T ss_dssp CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHH
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHH
Confidence 555 9999999999999999999985 55 44432211 11 25665 5889997 44568888876 67666
Q ss_pred hcCCCCcccccCC-CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEe
Q 015230 272 VAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFT 346 (411)
Q Consensus 272 ~~~~~~~~~~~t~-~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~ 346 (411)
+.. .....+. +.+...+++...++..... ++++++++++.+++.+.|++. ++..... ..+.++++.+.
T Consensus 255 ~~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~ 327 (420)
T 3gbx_A 255 LNS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFLLDLV 327 (420)
T ss_dssp HHH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECG
T ss_pred hhh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEEEEcC
Confidence 652 1122122 2333333333334433322 456777888888888888763 3221111 34667788764
Q ss_pred cCCCCCcchhcccchHHHHHHHHHHHHcCeEecc-------CC---Ccceeeec------CCCHHHHHHHHHHHHHHHHh
Q 015230 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-------SQ---FEAGFTSL------AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-------~~---~~~~~~~~------~~t~~~i~~~i~~l~~~~~~ 410 (411)
... .....+.+.|.++||.+.+ +. ...+|+.. ..+++++++++++|++++++
T Consensus 328 ~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 328 DKN------------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp GGT------------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCC------------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 311 1236788888899999988 21 12377742 25789999999999998764
No 186
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=4e-21 Score=186.70 Aligned_cols=328 Identities=14% Similarity=0.043 Sum_probs=195.2
Q ss_pred CcHHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHhhCC-CC-CEEEEeCChHHHHHHHHHHHHhc----------
Q 015230 53 ADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAF---------- 115 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~-~~-~~v~~~~~g~~a~~~al~~~~~~---------- 115 (411)
.++.+.+++.....+.....+ ..++++++.+++++.++ +. +.++||+||++|+..+++.++..
T Consensus 112 ~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~ 191 (497)
T 2qma_A 112 LMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSI 191 (497)
T ss_dssp BHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred cHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccch
Confidence 467777777665544221111 24556778889999997 33 79999999999999999876421
Q ss_pred --cC-----CcEEEEEeCCcCCCchhhhhhcCC---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CC
Q 015230 116 --TG-----RERIIKFEGCYHGHADPFLVKAGS---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KG 182 (411)
Q Consensus 116 --~~-----~~~vi~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~ 182 (411)
.+ ++.+|+.+...|.....++...|. .+..++......+ |+++|++.+++. ..
T Consensus 192 ~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~--------------d~~~L~~~i~~~~~~~~ 257 (497)
T 2qma_A 192 QKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTM--------------DITKLDEVIAQAKAEGL 257 (497)
T ss_dssp HHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSB--------------CGGGHHHHHHHHHHTTC
T ss_pred hhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcC--------------CHHHHHHHHHHHHHCCC
Confidence 11 232444444445444444444443 2333332211111 788899888742 11
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLP 258 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~ 258 (411)
++.+|+++..++++|.+.+ +++|.++|++||+++++|++|+++ .... +.....++ .+|++ +++|+++++++
T Consensus 258 ~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~ 332 (497)
T 2qma_A 258 IPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTIS 332 (497)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred cceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcc
Confidence 2457777777777888888 999999999999999999999877 4433 22222344 46765 45999997778
Q ss_pred ccccccc-HHHHHHhcCCCCcccc-cCCCCCHHHH----------HHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH
Q 015230 259 VGAYGGR-RDIMEMVAPAGPMYQA-GTLSGNPLAM----------TAGIHTLKRLKE---PGTYEYLNKITGELTQGIID 323 (411)
Q Consensus 259 ~g~~~~~-~~~~~~~~~~~~~~~~-~t~~~~~~~~----------a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~ 323 (411)
+|+++.+ +..++.+.....+... .+...++... ....++++.+.. +++.++..++.+++.+.|++
T Consensus 333 ~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~ 412 (497)
T 2qma_A 333 CGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT 412 (497)
T ss_dssp CEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998765 4434444321111111 0101111111 111223333322 45666777777888777775
Q ss_pred HHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----CCcceeee---cCCCHH
Q 015230 324 AGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTS---LAHSSD 395 (411)
Q Consensus 324 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~~~~~~~~---~~~t~~ 395 (411)
+ +.... ....+.+++|.+..... .......++.+.+.++|+.+.+. +...+|++ ..+|++
T Consensus 413 ~----~~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~e 480 (497)
T 2qma_A 413 N----DQFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTS 480 (497)
T ss_dssp C----TTEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHH
T ss_pred C----CCeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHH
Confidence 4 22111 12345677777743210 01122356788899999988653 22356764 478999
Q ss_pred HHHHHHHHHHHHHHhC
Q 015230 396 DIQHTITAAEKVLRQI 411 (411)
Q Consensus 396 ~i~~~i~~l~~~~~~~ 411 (411)
++++++++|+++++++
T Consensus 481 di~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 481 DFESLLSKINMLAVEL 496 (497)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 187
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.88 E-value=3e-21 Score=182.37 Aligned_cols=286 Identities=15% Similarity=0.065 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+..+...++.+.+++.++. ++.++++||++|+..+++.+ ..+++.|++..+.|++..........
T Consensus 62 ~~~~~~~~l~~~la~~~g~-~~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~------------ 126 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGG-EAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIG------------ 126 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGG------------
T ss_pred CCChHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHH------------
Confidence 3567788899999888853 47788888999999999854 34667899999999875443311100
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
..+..+..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+.+..+
T Consensus 127 ----~~g~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 127 ----EFGVKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp ----GGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred ----HcCCEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 0112344455568999998886 36899999999999999988 999999999999999999999744112
Q ss_pred cCccccccCCCcchhhhhhhccC-Cccc-ccccccHHHHH-HhcCCCCcccc-cCCCCCHHHHHHHHHHHHHHhcCChHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 308 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~~~~~~-~~~~~~~~~~~-~t~~~~~~~~a~~~~~l~~~~~~~~~~ 308 (411)
... .++.+..+.|++|++++ |.|+ |+++++++.++ .+.. .... .+.+.++++++++.++++.+ +...+
T Consensus 196 ~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ---GLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT---HHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH---HhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 111 23455556699999995 7887 88888887665 4542 1122 24567888888877776533 33455
Q ss_pred HHHHHHHHHHHHHHHHHH----hcCC---------ce-EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 309 YLNKITGELTQGIIDAGK----KAGH---------AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~----~~~~---------~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
+..++.+.+.+.|+++.. .++. .. ..++.|.++.|++.. . .....+.+.+.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~--~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-------------G--IGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-------------H--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-------------C--HHHHHHHHHhC
Confidence 666677777777765310 0000 00 012457788887732 1 13456666777
Q ss_pred CeEecc---CC---------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 375 GVYFAP---SQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 375 Gi~v~~---~~---------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
|+.+.. ++ ...+|++ ...++++++.+.++|+++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 776643 21 1346664 555777788888777654
No 188
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.88 E-value=7.8e-21 Score=180.27 Aligned_cols=301 Identities=13% Similarity=0.068 Sum_probs=189.9
Q ss_pred cccCCCcHHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeC
Q 015230 48 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 126 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~ 126 (411)
..+++.+++..+++.+ ...+..|+ ......+++.+++++.++ .+++++++||++|+..+++.+ ..+++.|++..+
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g-~~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEG-ALEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4677866665555444 12221222 234667888888888884 458999999999999999853 446678999999
Q ss_pred CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
.|++.......... ..+..+..++. |++++++.++ +++++|++++++|++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~~----------------~~g~~~~~~~~-~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVLS----------------LMGVTVRYVDP-EPEAVREALS---AKTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTTT----------------TTTCEEEEECS-SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHHH----------------HcCCEEEEECC-CHHHHHHHhc---cCCeEEEEeCCCCCCccccc----H
Confidence 88764333211000 01223444444 4888888876 36889999999999999988 9
Q ss_pred HHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh--hhhhhccC-CcccccccccH----------------
Q 015230 207 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGRR---------------- 266 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~~---------------- 266 (411)
++|.++|++||+++|+||+|+++ .... .....+|++ |++|++++ |.|+|+++..+
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHHHcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 99999999999999999999843 1111 112345554 69999984 78999886433
Q ss_pred ------------HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 015230 267 ------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334 (411)
Q Consensus 267 ------------~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 334 (411)
++.+.++... ........++..++.+...++.+ ++..++..++.+++.+.|++. +....+
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~~--~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v 306 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTLG--LSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKAL 306 (412)
T ss_dssp -----HHHHGGGHHHHHHHHHH--TTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEE
T ss_pred cccchhhccchHHHHHHHHHHH--HHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEE
Confidence 3333333110 01112245677666666555443 233455566777777777653 222212
Q ss_pred ------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--------------
Q 015230 335 ------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------- 382 (411)
Q Consensus 335 ------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------------- 382 (411)
++.|.++.|.+ .. .+.+.+.+.+.||.+ .++
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~---------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-GD---------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS---------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-CC---------------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 24567888877 31 145677777889998 541
Q ss_pred ----------------Ccceee--ecCCCHHHHHHHHHHHHH
Q 015230 383 ----------------FEAGFT--SLAHSSDDIQHTITAAEK 406 (411)
Q Consensus 383 ----------------~~~~~~--~~~~t~~~i~~~i~~l~~ 406 (411)
...+|+ ....++++++.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 123455 355577777777777753
No 189
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=7.6e-22 Score=185.78 Aligned_cols=258 Identities=14% Similarity=0.088 Sum_probs=173.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhh-cCCCCcccCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDS 151 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 151 (411)
+......++.+.+++..+ .+++++++||++|++.++. ...+++.|++..+.|++........ ..
T Consensus 64 ~~~p~~~~l~~~la~l~g-~~~~~~~~sG~~Ai~~~~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~~~----------- 128 (400)
T 3nmy_A 64 THNPTRFAYERCVAALEG-GTRAFAFASGMAATSTVME---LLDAGSHVVAMDDLYGGTFRLFERVRRR----------- 128 (400)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTHHH-----------
T ss_pred CCCHHHHHHHHHHHHHhC-CCCEEEecCHHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHhhHh-----------
Confidence 456777888888888875 4578888899999998543 3456778999999998654443222 00
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccc
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~ 231 (411)
..+..+..++.+|+++++++++ +++++|++++++|++|.+.+ +++|+++|++||+++|+||+|+....
T Consensus 129 -----~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~~~~ 196 (400)
T 3nmy_A 129 -----TAGLDFSFVDLTDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFASPML 196 (400)
T ss_dssp -----HHCCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred -----hcCeEEEEECCCCHHHHHHHhc---cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccccc
Confidence 0122455566679999998886 46899999999999999998 99999999999999999999972211
Q ss_pred ccCccccccCCCcchhhhhhhccC-Cccccc--c-cccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--Y-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 307 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~~g~--~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~ 307 (411)
... ..++.++.+.|++|+++| |.++|+ + ..++++++.+.. .....+...+++.++.+...++.+ +...
T Consensus 197 ~~~---~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~~r~ 268 (400)
T 3nmy_A 197 QRP---LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--PLRM 268 (400)
T ss_dssp CCG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--HHHH
T ss_pred CCh---hhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--HHHH
Confidence 111 123555666789999996 567655 3 447777777652 122335566788877777666543 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEE------------------eeecceEEEEEecCCCCCcchhcccchHHHHHHHH
Q 015230 308 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 369 (411)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (411)
++..++..++.+.|++ ++....+ ++.|.+++|++.. ..+.+.++.+
T Consensus 269 ~~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~------------~~~~~~~~~~ 332 (400)
T 3nmy_A 269 RAHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKG------------GFDAAKRFCE 332 (400)
T ss_dssp HHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCC------------cHHHHHHHHH
Confidence 5566666666666654 3444333 5678899999942 1233456666
Q ss_pred HHHHcCeEeccC
Q 015230 370 GMLEEGVYFAPS 381 (411)
Q Consensus 370 ~l~~~Gi~v~~~ 381 (411)
.++-.++.+..+
T Consensus 333 ~l~~~~~~~s~G 344 (400)
T 3nmy_A 333 KTELFTLAESLG 344 (400)
T ss_dssp HCSSSEECSCCC
T ss_pred cCCcceEecCCC
Confidence 665545444444
No 190
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.88 E-value=6.1e-22 Score=185.57 Aligned_cols=306 Identities=16% Similarity=0.075 Sum_probs=189.4
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
++++++++.+.+.... .+......++.+.+++.+ +.+++++++||++|+..+++.+ ...+++.|++..++|++...
T Consensus 16 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sgt~al~~~l~~l-~~~~gd~Vi~~~~~~~~~~~ 91 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW--FILGDEDKKFEQEFADYC-NVNYCIGCGNGLDALHLILKGY-DIGFGDEVIVPSNTFIATAL 91 (373)
T ss_dssp HHHHHHHHHHHHHHTC--CSSSHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEETTSCTHHHH
T ss_pred CHHHHHHHHHHHHCCC--ccCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHHHH
Confidence 4566777777776642 245566677777777777 4569999999999999999853 24567789999999887443
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. +...|..+..++.....+. + |++++++.++ +++++|+ +++++|...+ +++|.++|
T Consensus 92 ~-~~~~g~~~~~~~~~~~~~~----------~---d~~~l~~~l~---~~~~~v~---~~n~~G~~~~----l~~i~~l~ 147 (373)
T 3frk_A 92 A-VSYTGAKPIFVEPDIRTYN----------I---DPSLIESAIT---EKTKAII---AVHLYGQPAD----MDEIKRIA 147 (373)
T ss_dssp H-HHHHSCEEEEECEETTTTE----------E---CGGGTGGGCC---TTEEEEE---EECCTTCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEeccccccC----------c---CHHHHHHhcC---CCCeEEE---EECCCcCccc----HHHHHHHH
Confidence 3 4444554443322111110 0 7788887775 3677777 3346787777 99999999
Q ss_pred HHhCCEEEEeccccccccccCccccccCCCcchhhhh----hhccC-Cccccccccc-HHHHHHhcC---CC------Cc
Q 015230 214 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AG------PM 278 (411)
Q Consensus 214 ~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~-G~~~g~~~~~-~~~~~~~~~---~~------~~ 278 (411)
++||+++|+||+|+. |..+....++..+|++++| |++++ | +.|+++++ +++.+.+.. .. ..
T Consensus 148 ~~~~~~li~D~a~~~---g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 223 (373)
T 3frk_A 148 KKYNLKLIEDAAQAH---GSLYKGMKVGSLGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHI 223 (373)
T ss_dssp HHHTCEEEEECTTCT---TCEETTEETTSSSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCC
T ss_pred HHcCCEEEEECCccc---CCEECCEeccccccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccc
Confidence 999999999999972 1112222334345776555 99976 5 37777664 455554431 10 01
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhc
Q 015230 279 YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAK 357 (411)
Q Consensus 279 ~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 357 (411)
..+.++..++++++.+...++.+ ++..++.+++.+++++.|+++. ........ ....+..+.+..
T Consensus 224 ~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~---------- 289 (373)
T 3frk_A 224 YKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIRS---------- 289 (373)
T ss_dssp SCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEEE----------
T ss_pred cccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEEe----------
Confidence 11234456777777766555433 3456667777777777665542 11110000 112222222211
Q ss_pred ccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 358 KSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 358 ~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
+ +...+.+.|.++||.+.+... ..+|++ ..+|++|++++++.|+++.
T Consensus 290 -~---~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 290 -E---KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp -S---SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred -C---CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 1 236899999999999986531 125664 5779999999999998754
Q ss_pred H
Q 015230 409 R 409 (411)
Q Consensus 409 ~ 409 (411)
.
T Consensus 366 ~ 366 (373)
T 3frk_A 366 L 366 (373)
T ss_dssp -
T ss_pred h
Confidence 3
No 191
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.88 E-value=9.2e-22 Score=183.37 Aligned_cols=304 Identities=12% Similarity=0.033 Sum_probs=198.1
Q ss_pred CcHHHHHHHHHHHHcCC-CCCC-C---CHHHHHHHHHHHhhCC--CCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGT-SFGA-P---CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~-~~~~-~---~~~~~~l~~~l~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.++++++++.+++.+.. .+.. . .+..+++.+++++.++ ..+++++|+||++|+..+++. +.++ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~---l~~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQN---CVEK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHH---HCSS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHh---ccCC-cEEEEc
Confidence 57889999988887743 1211 2 2456788888888886 367899999999999999984 3344 767777
Q ss_pred CCcCCCchh-hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 126 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 126 ~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.++++.... .....|..+..++......+ |+++++ + .+++++|++++++|++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~l~--~---~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKGF--------------YPADIT--V---PADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCCC--------------CGGGCC--C---CTTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCCC--------------CHHHHh--c---cCCccEEEEEcCCCCcceeCC---
Confidence 766652211 22233444444332211111 667766 2 246788888888888999988
Q ss_pred HHHHHHHHHHHh-CCEEEEeccccccccccCccccccCCCcch--hhhhhhccCCcccccccccHHHHHHhcCCCC----
Q 015230 205 FLNAIRRITKEN-GALLIFDEVMTGFRLAYGGAQEYFGVTPDL--TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP---- 277 (411)
Q Consensus 205 ~l~~i~~l~~~~-~~~li~De~~~g~~~g~~~~~~~~~~~~d~--~~~sK~~~~G~~~g~~~~~~~~~~~~~~~~~---- 277 (411)
+++|.++|++| |+++|+|++|+.. .. ..+... .|+ .+++|+++++..+|++++++++++.+.+...
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~---~~-~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLP---YP-KFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTT---SS-CCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccC---Cc-ccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCC
Confidence 99999999999 9999999999722 10 011111 344 4788999842226778888888776652110
Q ss_pred --cc------------cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-----
Q 015230 278 --MY------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG----- 335 (411)
Q Consensus 278 --~~------------~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----- 335 (411)
.+ .....+.+..++.+..++++.+.. ++.+++.+++.+++.+.|+++ +......
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~ 297 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSFGVEDAKL 297 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEESSSCGGG
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCceeccCChhh
Confidence 00 011445677777777777775543 455666677777777777654 2221111
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----Ccceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
..+.++++.+.+ +..++.+.|.++||.+.++. ...+|++ ...+++++++++++|++++
T Consensus 298 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 298 RSMTTIVANTTM---------------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp BCSSEEEEEESS---------------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEecCC---------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 235567776632 23789999999999999753 3457886 4569999999999998864
No 192
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.87 E-value=1.7e-21 Score=182.17 Aligned_cols=301 Identities=14% Similarity=0.055 Sum_probs=193.6
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
+|++++++.+.++.+ ..++.....++.+.+++.+ +.+++++++||++|++.+++.+ ...+++.|++..++|++...
T Consensus 15 ~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~-~~~~~~~~~sGt~al~~al~~~-~~~~gd~Vi~~~~~~~~~~~ 90 (367)
T 3nyt_A 15 KDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFV-GAKYCISCANGTDALQIVQMAL-GVGPGDEVITPGFTYVATAE 90 (367)
T ss_dssp HHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh-CCCCcCEEEECCCccHHHHH
Confidence 355667777776664 2235566677788887777 4459999999999999999854 24567789999988886544
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. ....|..+..++.....+.. |++++++.++ +++++|+. ++.+|...+ +++|.++|
T Consensus 91 ~-~~~~G~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~---~~~~G~~~~----~~~i~~la 146 (367)
T 3nyt_A 91 T-VALLGAKPVYVDIDPRTYNL-------------DPQLLEAAIT---PRTKAIIP---VSLYGQCAD----FDAINAIA 146 (367)
T ss_dssp H-HHHTTCEEEEECBCTTTCSB-------------CGGGTGGGCC---TTEEEECC---BCGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCccCCc-------------CHHHHHHhcC---cCCcEEEe---eCCccChhh----HHHHHHHH
Confidence 3 34445444443332111111 7788887775 46777773 234577777 99999999
Q ss_pred HHhCCEEEEecccc-cc-ccccCccccccCCCcchhhh----hhhccC-Ccccccccc-cHHHHHHhcCCCCc-------
Q 015230 214 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGG-RRDIMEMVAPAGPM------- 278 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~----sK~~~~-G~~~g~~~~-~~~~~~~~~~~~~~------- 278 (411)
++||++||+||+|+ |. ..+.. .+...|++++ +|.+++ |. .|+++. ++++.+.+......
T Consensus 147 ~~~~~~li~D~a~~~g~~~~~~~-----~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~ 220 (367)
T 3nyt_A 147 SKYGIPVIEDAAQSFGASYKGKR-----SCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYH 220 (367)
T ss_dssp HHTTCCBEEECTTTTTCEETTEE-----TTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHcCCEEEEECccccCCeECCee-----ccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCce
Confidence 99999999999997 33 22221 1222266654 499987 76 777766 56676665421110
Q ss_pred --ccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcch
Q 015230 279 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFED 355 (411)
Q Consensus 279 --~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 355 (411)
..+.++..+++.++++.+.++.+ ++..++.+++.+++++.|+++....+.... ......++.+.+.
T Consensus 221 ~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 289 (367)
T 3nyt_A 221 HIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD--------- 289 (367)
T ss_dssp ECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS---------
T ss_pred eeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC---------
Confidence 11346778889888888877654 445677788888888888776211111100 0111112233221
Q ss_pred hcccchHHHHHHHHHHHHcCeEeccCCC-c-----------------------ceeee--cCCCHHHHHHHHHHHHH
Q 015230 356 AKKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------------AGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~-----------------------~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
+.+.+.+.|.++||.+.+... + .+++| ...|++|++++++.|.+
T Consensus 290 -------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 290 -------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp -------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred -------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 136889999999998876532 0 14554 46799999999999875
No 193
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.87 E-value=2.2e-21 Score=181.82 Aligned_cols=305 Identities=12% Similarity=0.091 Sum_probs=191.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh
Q 015230 57 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136 (411)
Q Consensus 57 v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~ 136 (411)
+++++.+.+.... .++.....++.+.+++.++ .+++++++||++|++.+++.+ ...+++.|++..++|++.... .
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~-~~~~~~~~~gt~a~~~~~~~~-~~~~gd~v~~~~~~~~~~~~~-~ 95 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEKFEKRFAALHN-APHAIGVGTGTDALAMSFKML-NIGAGDEVITCANTFIASVGA-I 95 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSSCHHHHHH-H
T ss_pred HHHHHHHHHHcCC--cccChhHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHc-CCCCCCEEEECCCccHHHHHH-H
Confidence 8888888877642 2456777888888888884 458999999999999999853 145678899999999875433 3
Q ss_pred hhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh
Q 015230 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216 (411)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~ 216 (411)
...|..+..++......+ |++++++.++ +++++++ + ++++|...+ +++|.++|++|
T Consensus 96 ~~~g~~~~~~~~~~~~~~--------------d~~~l~~~~~---~~~~~v~--~-~n~~G~~~~----~~~i~~~~~~~ 151 (374)
T 3uwc_A 96 VQAGATPVLVDSENGYVI--------------DPEKIEAAIT---DKTKAIM--P-VHYTGNIAD----MPALAKIAKKH 151 (374)
T ss_dssp HHTTCEEEEECBCTTSSB--------------CGGGTGGGCC---TTEEEEC--C-BCGGGCCCC----HHHHHHHHHHT
T ss_pred HHcCCEEEEEecCCCCCc--------------CHHHHHHhCC---CCceEEE--E-eCCcCCcCC----HHHHHHHHHHc
Confidence 344444433332211111 7788877775 3567766 3 445777777 99999999999
Q ss_pred CCEEEEeccccccccccCccccccCCCcchhhhh----hhccC-Cccccccccc-HHHHHHhcCCCCc---------ccc
Q 015230 217 GALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAPAGPM---------YQA 281 (411)
Q Consensus 217 ~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~s----K~~~~-G~~~g~~~~~-~~~~~~~~~~~~~---------~~~ 281 (411)
|+++|+||+|+.+ ..+.....+..+|++++| |++++ |. .|+++++ +++.+.+...... ..+
T Consensus 152 ~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (374)
T 3uwc_A 152 NLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYG 227 (374)
T ss_dssp TCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCC
T ss_pred CCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCcccccc
Confidence 9999999999732 112222334345776555 99986 65 7777654 4565544321110 012
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-eecceEEEEEecCCCCCcchhcccc
Q 015230 282 GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 282 ~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
.++..+++.++.+...++.+ ++..++.+++.+++++.|+++........... ....+..+.+.. +
T Consensus 228 ~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~- 293 (374)
T 3uwc_A 228 INCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-----------K- 293 (374)
T ss_dssp CBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-----------T-
T ss_pred ccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-----------C-
Confidence 23344566665554443322 44566677777777777765521011111001 112222222211 1
Q ss_pred hHHHHHHHHHHHHcCeEeccCCC---------------------------cceee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+..++.+.|.++||.+.++.. ..+|+ ...+|++|+++++++|++++++
T Consensus 294 --~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 294 --YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp --THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 236889999999999988741 22455 3567999999999999999875
No 194
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.87 E-value=6e-21 Score=175.77 Aligned_cols=275 Identities=13% Similarity=0.014 Sum_probs=177.7
Q ss_pred HHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCC
Q 015230 81 LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKG 157 (411)
Q Consensus 81 l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~ 157 (411)
+.+.+++.++ .++.+++++|++|+..+++.+ ..+++.|++..++|++....... ..|.
T Consensus 3 l~~~la~~~g-~~~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~---------------- 63 (331)
T 1pff_A 3 LEGKIAKLEH-AEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV---------------- 63 (331)
T ss_dssp HHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------------
T ss_pred HHHHHHHHhC-CCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC----------------
Confidence 4444555554 346777777899999999853 34567899999999875443321 1222
Q ss_pred CCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH-hCCEEEEeccccccccccCcc
Q 015230 158 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGGA 236 (411)
Q Consensus 158 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~-~~~~li~De~~~g~~~g~~~~ 236 (411)
.+..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.......
T Consensus 64 ---~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~~-- 131 (331)
T 1pff_A 64 ---EVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTNP-- 131 (331)
T ss_dssp ---EEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCCG--
T ss_pred ---EEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCCh--
Confidence 233344457888888776 46889999998889999988 9999999999 9999999999973311111
Q ss_pred ccccCCCcchhhhhhhccC-Ccc-cccccccH-HHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015230 237 QEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313 (411)
Q Consensus 237 ~~~~~~~~d~~~~sK~~~~-G~~-~g~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~ 313 (411)
. .++.+..+.|++|++++ |.| +|++++++ ++++.+.+....+ .+.+.+++++.++.++++.+. ...++..++
T Consensus 132 ~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 206 (331)
T 1pff_A 132 L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI--TGAIISPHDAWLITRGTLTLD--MRVKRAAEN 206 (331)
T ss_dssp G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC--CCCCCCHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh--cCCCCCHHHHHHHHcCcchHH--HHHHHHHHH
Confidence 1 23444445689999985 788 78998888 8888887533210 345677888777666665432 223344455
Q ss_pred HHHHHHHHHHHHH----------hcCCce----EEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec
Q 015230 314 TGELTQGIIDAGK----------KAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 379 (411)
Q Consensus 314 ~~~~~~~l~~~~~----------~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~ 379 (411)
...+.+.+++... ..+... ..++.|.++.+.+.+ ...+.+.|.++||++.
T Consensus 207 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~~~ 270 (331)
T 1pff_A 207 AQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------------LEKAKKVLDNCHVVSL 270 (331)
T ss_dssp HHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------------HHHHHHHHHTCSSSEE
T ss_pred HHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----------------HHHHHHHHHhCCCcee
Confidence 5555555544210 000000 012346777777631 1467788888999764
Q ss_pred cCC------------------------------Ccceeee--cCCCHHHHHHHHHHHHHH
Q 015230 380 PSQ------------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 407 (411)
Q Consensus 380 ~~~------------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~ 407 (411)
... ...+|++ ...|+++++.+++.|+++
T Consensus 271 ~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 271 AVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred ccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 331 2346664 566888899888888754
No 195
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.87 E-value=1.7e-21 Score=183.76 Aligned_cols=305 Identities=16% Similarity=0.115 Sum_probs=194.0
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCch
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 133 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~ 133 (411)
++++++++.+.+.... +.+......++.+.+++.++ .+++++++||++|++.+++.+ ...+++.|++..++|++...
T Consensus 35 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~i~~~~gt~al~~~l~~~-~~~~gd~vl~~~~~~~~~~~ 111 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-ISSVGRFIVEFEKAFADYCG-VKHAIACNNGTTALHLALVAM-GIGPGDEVIVPSLTYIASAN 111 (391)
T ss_dssp CSSHHHHHHHHHHHTC-CSSCSHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH-TCCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCC-ccCCChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCchHHHHH
Confidence 4778899988888742 22356667788888887774 458999999999999999864 24567899999999987544
Q ss_pred hhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 134 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 134 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
. ....|..+..++.....+.. |++++++.++ +++++|+++ +++|...+ +++|.++|
T Consensus 112 ~-~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~~~---~~~~~v~~~---n~tG~~~~----~~~i~~l~ 167 (391)
T 3dr4_A 112 S-VTYCGATPVLVDNDPRTFNL-------------DAAKLEALIT---PRTKAIMPV---HLYGQICD----MDPILEVA 167 (391)
T ss_dssp H-HHHTTCEEEEECBCTTTCSB-------------CGGGSGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHH
T ss_pred H-HHHCCCEEEEEecCccccCc-------------CHHHHHHhcC---CCceEEEEE---CCCCChhh----HHHHHHHH
Confidence 3 33445444443322111110 7777777765 367777642 35677777 99999999
Q ss_pred HHhCCEEEEecccc-cc-ccccCccccccCCCcchhhhh----hhccCCccccccccc-HHHHHHhcCCCC---------
Q 015230 214 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAPAGP--------- 277 (411)
Q Consensus 214 ~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~~~~s----K~~~~G~~~g~~~~~-~~~~~~~~~~~~--------- 277 (411)
++||+++|+||+|+ |. ..+. ..+..+|+.++| |++++ .+.|+++.+ +.+.+.+.....
T Consensus 168 ~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (391)
T 3dr4_A 168 RRHNLLVIEDAAEAVGATYRGK-----KSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPNRRY 241 (391)
T ss_dssp HHTTCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTCCTTSTT
T ss_pred HHcCCEEEEECcccccceECCe-----eecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCCCCCCcc
Confidence 99999999999997 33 2221 122223555444 88876 367887654 556555431100
Q ss_pred --cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-------eeecceEEEEEecC
Q 015230 278 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------GYISGMFGFFFTEG 348 (411)
Q Consensus 278 --~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~g~~~~~~~~~~ 348 (411)
...+..+..+++.++++...++.+ ++..++.+++.+++++.|+++ ++.... ...+.++++.+...
T Consensus 242 ~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (391)
T 3dr4_A 242 WFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL----GNRVTKPHVALTGRHVFWMYTVRLGEG 315 (391)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG----TTSEECCCCCTTSCCCCSSEEEEECSS
T ss_pred cccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CccccCcCCCCCCcceeEEEEEEECCc
Confidence 011123456667666665554433 446677777888888887765 221111 12233456665321
Q ss_pred CCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc------------------------ceee--ecCCCHHHHHHHHH
Q 015230 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFT--SLAHSSDDIQHTIT 402 (411)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~------------------------~~~~--~~~~t~~~i~~~i~ 402 (411)
...+..++.+.|.++||.+.++..+ .+++ ...+|++|++++++
T Consensus 316 -----------~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~ 384 (391)
T 3dr4_A 316 -----------LSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIA 384 (391)
T ss_dssp -----------CSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHH
Confidence 0122368999999999999876411 1455 35679999999999
Q ss_pred HHHHHH
Q 015230 403 AAEKVL 408 (411)
Q Consensus 403 ~l~~~~ 408 (411)
+|++++
T Consensus 385 ~l~~~l 390 (391)
T 3dr4_A 385 ALDQVL 390 (391)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998764
No 196
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.86 E-value=1.1e-20 Score=179.60 Aligned_cols=285 Identities=16% Similarity=0.107 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+++++.++. ++.+++++|++|+..+++.. ..+++.||+..+.|++.........
T Consensus 112 ~~~~~~~l~~~lA~l~g~-~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~-------------- 174 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEGA-ESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 174 (445)
T ss_dssp CCHHHHHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH--------------
Confidence 466778888888888864 36666777889999999843 3456789998888876433211000
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~ 233 (411)
...+..+..++.+|++++++.++.. .+++|++++++|++|.+.+ +++|.++|++||+++|+||+|+.. .
T Consensus 175 --~~~G~~v~~v~~~d~~~l~~ai~~~--tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~---~ 243 (445)
T 1qgn_A 175 --PKMGITATVIDPADVGALELALNQK--KVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP---L 243 (445)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHHS--CEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT---T
T ss_pred --HHcCCEEEEeCCCCHHHHHHHhccC--CCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc---c
Confidence 0112345566667999999999842 3389999999999999988 999999999999999999999722 1
Q ss_pred CccccccCCCcchh--hhhhhccC-C-cccccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 234 GGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 234 ~~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
. .......+|++ |++|.+++ | .++|++++++++++.+.... .......+++.++.+.+.++.+ +...++
T Consensus 244 ~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~---~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 316 (445)
T 1qgn_A 244 N--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH---HILGGALNPNAAYLIIRGMKTL--HLRVQQ 316 (445)
T ss_dssp T--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred c--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH---HHhCCCCCHHHHHHHHHhHHHH--HHHHHH
Confidence 1 11123345655 69999986 4 47999999998888775211 1112234666666555555433 223345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceE------------------EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 371 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 371 (411)
..++..++.+.|++. +.... .++.|.+++|++.. .......+.+.|
T Consensus 317 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~------------~~~~~~~~l~~l 380 (445)
T 1qgn_A 317 QNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG------------DLLTTAKFVDAL 380 (445)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS------------CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC------------CHHHHHHHHHhC
Confidence 555666676776654 32211 12468889998842 112345566665
Q ss_pred HHcCeEeccCCC---------------------------cceeeecCCCHHHHHHHHHHHHHHHHhC
Q 015230 372 LEEGVYFAPSQF---------------------------EAGFTSLAHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 372 ~~~Gi~v~~~~~---------------------------~~~~~~~~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...++.++.|+. +.+|+++. .|+++.+++.|+++++.+
T Consensus 381 ~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 381 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDSI 445 (445)
T ss_dssp SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHHC
T ss_pred CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhhC
Confidence 544555444432 23666655 568999999999998764
No 197
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.85 E-value=1.4e-20 Score=178.78 Aligned_cols=281 Identities=16% Similarity=0.109 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh---hhcCCCCcccCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 150 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~g~~~~~~~~~~ 150 (411)
..+...++.+.+++.++. +..+++++|++|+..+++.+ ..+++.|++..+.||+...... ...|.
T Consensus 56 ~~~~~~~l~~~la~~~g~-~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--------- 123 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEGG-KAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--------- 123 (421)
T ss_dssp BCHHHHHHHHHHHHHHTC-SEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC---------
T ss_pred CChHHHHHHHHHHHHhCC-CceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC---------
Confidence 456678888888888853 35677778899999999854 4567889999999997655432 22222
Q ss_pred CCCCCCCCCCceeec-CCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc
Q 015230 151 SPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229 (411)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~ 229 (411)
.+..+ +.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++
T Consensus 124 ----------~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~ 186 (421)
T 2ctz_A 124 ----------EVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMG 186 (421)
T ss_dssp ----------EEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGG
T ss_pred ----------EEEEECCCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 34445 5558999998886 37899999999999999998 999999999999999999999433
Q ss_pred -ccccCccccccCCCcchh--hhhhhccC-Cccccccccc-H--HH----HHHhcCCCCcccc-----------------
Q 015230 230 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR-R--DI----MEMVAPAGPMYQA----------------- 281 (411)
Q Consensus 230 -~~g~~~~~~~~~~~~d~~--~~sK~~~~-G~~~g~~~~~-~--~~----~~~~~~~~~~~~~----------------- 281 (411)
..+.. .+..+|++ |++|++++ |.|+|+++.. + ++ ++.+.+....+++
T Consensus 187 g~~~~~-----~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r 261 (421)
T 2ctz_A 187 GYLLRP-----LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp GTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred cccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHH
Confidence 22222 23346766 89999995 7899988653 1 11 2223211011110
Q ss_pred ------cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-------------------ee
Q 015230 282 ------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------------------GY 336 (411)
Q Consensus 282 ------~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------------~~ 336 (411)
.....+++.++++...++.+. ...++..++.+++.+.|++. +.+..+ ++
T Consensus 262 ~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 262 VDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ----PQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC----CCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 122557777776666655432 23444556666777666653 333222 35
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC---------------------------cceeee
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS 389 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------~~~~~~ 389 (411)
.|.++.|++.+ .......+.+.+...++.++.++. ..+|++
T Consensus 336 ~g~ivsf~l~~------------~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS 403 (421)
T 2ctz_A 336 PGAVLTFGLKG------------GYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp CCSEEEEEETT------------HHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred CceEEEEEeCC------------CHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 68889998842 112334555555444554444321 224444
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 015230 390 LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 390 ~~~t~~~i~~~i~~l~~~~ 408 (411)
+ ..++++.+++.|++++
T Consensus 404 ~--g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 404 V--GLEHVEDLKAELKEAL 420 (421)
T ss_dssp C--CSSCHHHHHHHHHHHT
T ss_pred e--CCCCHHHHHHHHHHHh
Confidence 3 4468999999998876
No 198
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.85 E-value=3.2e-19 Score=173.58 Aligned_cols=314 Identities=12% Similarity=0.024 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhc-------cC----Cc-EEEEEeCCcCCCchhhhhhc
Q 015230 75 CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RE-RIIKFEGCYHGHADPFLVKA 139 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~-------~~----~~-~vi~~~~~~~~~~~~~~~~~ 139 (411)
..++.++.+++++.++ . .+.++||+||++|+..+++.++.. .+ ++ .|++ +...|.....++...
T Consensus 131 ~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~-s~~~h~s~~~~~~~~ 209 (504)
T 2okj_A 131 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFT-SEQSHYSIKKAGAAL 209 (504)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEE-CCcchHHHHHHHHHc
Confidence 3456778899999887 4 679999999999999999877532 22 13 4555 444444444444444
Q ss_pred CC---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHH
Q 015230 140 GS---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213 (411)
Q Consensus 140 g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~ 213 (411)
|. .+..++......+ |+++|++++++. ..++++|+++..++++|.+.+ +++|.++|
T Consensus 210 g~g~~~v~~v~~~~~~~~--------------d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la 271 (504)
T 2okj_A 210 GFGTDNVILIKCNERGKI--------------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADIC 271 (504)
T ss_dssp TSCGGGEEEECBCTTSCB--------------CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHH
T ss_pred CCCcccEEEEecCCCCCC--------------CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHH
Confidence 43 2333332211111 899999999742 225788888888888898888 99999999
Q ss_pred HHhCCEEEEecccccc-ccccCccccccCC-Ccchhh--hhhhccCCcccccccccH-HHHHH-hcCCCCccccc-C---
Q 015230 214 KENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIMEM-VAPAGPMYQAG-T--- 283 (411)
Q Consensus 214 ~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~~--~sK~~~~G~~~g~~~~~~-~~~~~-~~~~~~~~~~~-t--- 283 (411)
++||+++++|++|+++ .....+.....++ .+|+++ .+|++++++++|++++++ ++++. +........+. .
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD 351 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence 9999999999999866 3322111122233 456654 569998767899998765 45553 22211211110 0
Q ss_pred -------------CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE---eeecceEEEEEec
Q 015230 284 -------------LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTE 347 (411)
Q Consensus 284 -------------~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~g~~~~~~~~~ 347 (411)
-....+.+.++++++..-.-+++.++..++.+++.+.|+++ +..... .+.+.++.|....
T Consensus 352 ~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~ 427 (504)
T 2okj_A 352 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIP 427 (504)
T ss_dssp GGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECC
T ss_pred CcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeC
Confidence 01235666665555532111455667777777777777653 221111 1334445554422
Q ss_pred CCCCCc--chhccc-chHHHHHHHHHHHHcCeE-eccC---CC-cceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 348 GPVYNF--EDAKKS-ETTKFARFYRGMLEEGVY-FAPS---QF-EAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 348 ~~~~~~--~~~~~~-~~~~~~~~~~~l~~~Gi~-v~~~---~~-~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
...... ...+.. ......++.+.|.++|++ +.+. +. ..+|+++ .+|++++++++++|+++++++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 428 QSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp GGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 110000 000000 011245788899999954 4321 21 3577754 479999999999999987653
No 199
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.84 E-value=4.1e-19 Score=173.23 Aligned_cols=311 Identities=14% Similarity=0.075 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhc-----c-CC-----c-EEEEEeCCcCCCchhhhhhcCC
Q 015230 75 CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----T-GR-----E-RIIKFEGCYHGHADPFLVKAGS 141 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~-----~-~~-----~-~vi~~~~~~~~~~~~~~~~~g~ 141 (411)
.+.+.++.+++++.++ ..+.++||+||++|+..+++.++.. . ++ . .|++.+.. |.....++...|.
T Consensus 147 ~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~-h~s~~~~~~~~g~ 225 (515)
T 2jis_A 147 VLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC-HYSIQKGAAFLGL 225 (515)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS-CTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc-cHHHHHHHHHcCC
Confidence 3556788899999987 5679999999999999999877532 1 12 2 45554444 5455555555454
Q ss_pred ---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH
Q 015230 142 ---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 215 (411)
Q Consensus 142 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~ 215 (411)
.+..++......+ |+++|++++++. ..++++|+++..++++|.+.+ +++|.++|++
T Consensus 226 g~~~v~~v~~~~~~~~--------------d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~ 287 (515)
T 2jis_A 226 GTDSVRVVKADERGKM--------------VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQR 287 (515)
T ss_dssp CGGGEEEECBCTTSCB--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred CCCcEEEEecCCCCcC--------------CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence 2333332211111 899999999742 225788888888888999988 9999999999
Q ss_pred hCCEEEEecccccc-ccccCccccccCC-Ccchhh--hhhhccCCcccccccccHH--HHHHh-cCCCCccc--------
Q 015230 216 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD--IMEMV-APAGPMYQ-------- 280 (411)
Q Consensus 216 ~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~~--~sK~~~~G~~~g~~~~~~~--~~~~~-~~~~~~~~-------- 280 (411)
||+++++|++|+++ .....+.....++ .+|+++ ++|++++++++|+++++++ +++.. ........
T Consensus 288 ~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred cCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999866 4333222222233 467664 5899987667899977655 65542 11111110
Q ss_pred ---ccCC------CCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeecceEEEEEecCCC
Q 015230 281 ---AGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPV 350 (411)
Q Consensus 281 ---~~t~------~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 350 (411)
..++ ....+.+.++++++..-.-+++.++..++.+++.+.|+++ +..... ......+.|.+.....
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~p~~~ 443 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR----EGFELVMEPEFVNVCFWFVPPSL 443 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTEEESSCCSSSEEEEEECCGGG
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCeeEEEEEEeCccc
Confidence 0011 1123444444444432111556677788888888888764 221111 1223334444321110
Q ss_pred CCcchhcccch--H----HHHHHHHHHHHcCeEecc-----CCCcceeeec---CCCHHHHHHHHHHHHHHHHhC
Q 015230 351 YNFEDAKKSET--T----KFARFYRGMLEEGVYFAP-----SQFEAGFTSL---AHSSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 351 ~~~~~~~~~~~--~----~~~~~~~~l~~~Gi~v~~-----~~~~~~~~~~---~~t~~~i~~~i~~l~~~~~~~ 411 (411)
.... .... . ....+.+.+.++|+.+.. +....+|+++ .+|++++++++++|+++++++
T Consensus 444 ~~~~---~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 444 RGKQ---ESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp TTCT---TSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred cccc---cchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 0000 0000 0 123477888888975522 2223567654 489999999999999988764
No 200
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.84 E-value=7e-20 Score=175.90 Aligned_cols=322 Identities=11% Similarity=-0.013 Sum_probs=196.3
Q ss_pred CcHHHHHHHHHHHHcCC-CCC-C--CCHHHHHHHHHHHhhCC-CCC-----EEEEeCChHHHHHHHHHHHHhc-------
Q 015230 53 ADDQVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 115 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~-~~~-~--~~~~~~~l~~~l~~~~~-~~~-----~v~~~~~g~~a~~~al~~~~~~------- 115 (411)
.+|.+.+++.+++.... .+. + ..++++++.+++++.++ ..+ .+++|+||++|+..++..++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999988886521 111 1 24567889999999997 433 4999999999999999765421
Q ss_pred cC----CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc
Q 015230 116 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 191 (411)
Q Consensus 116 ~~----~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~ 191 (411)
.+ ++.|++.+ .|..+..+....|..+..++.....+.. |+++++++++. ++++|+++.
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~~-------------d~~~l~~~i~~---~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLFM-------------DPKRMIEACDE---NTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCSC-------------CHHHHHHHCCT---TEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCeE-------------CHHHHHHHHhh---CCEEEEEEc
Confidence 22 24666655 6655555555566655554432211111 89999998863 577888887
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHh------CCEEEEecccccc-c--cccCccccccCCCcchh--hhhhhccCCcccc
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVG 260 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~------~~~li~De~~~g~-~--~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g 260 (411)
.++++|.+.+ +++|.++|++| ++++++|++|.++ . .......+.--...|.+ +.+|++.+|+++|
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G 271 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 271 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeE
Confidence 7778899988 99999999996 9999999999865 2 12111111100134544 4569776788899
Q ss_pred cccccH-HHH-HHhcCCCCccccc-------CCCC---CHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 261 AYGGRR-DIM-EMVAPAGPMYQAG-------TLSG---NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 261 ~~~~~~-~~~-~~~~~~~~~~~~~-------t~~~---~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
++++++ ..+ +.+... +.+.+. ..+. ..+++.+++..+..-.-++..++..++.+++.+.|+++
T Consensus 272 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---- 346 (452)
T 2dgk_A 272 WVIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL---- 346 (452)
T ss_dssp EEEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred EEEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 998754 333 433210 111110 0111 22333333333321111455666777777777777654
Q ss_pred CCceEE-e----eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEecc----CC---Ccceeee--cCCCH
Q 015230 329 GHAICG-G----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFTS--LAHSS 394 (411)
Q Consensus 329 ~~~~~~-~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~~---~~~~~~~--~~~t~ 394 (411)
+..... . ....++.|.+..... ......++.+.|.++|+.+.. .. ...+|++ ...|+
T Consensus 347 ~~~~~~~~~~~~~~~~~v~f~~~~~~~---------~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 347 GPYEFICTGRPDEGIPAVCFKLKDGED---------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEM 417 (452)
T ss_dssp SSEEEEEECCTTTBSSEEEEEECTTCC---------CSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCH
T ss_pred CCeEEecCCCCCCCeEEEEEEecCccc---------ccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCH
Confidence 322222 2 235566776642110 001136789999999996542 21 2246764 44589
Q ss_pred HHHHHHHHHHHHHHHh
Q 015230 395 DDIQHTITAAEKVLRQ 410 (411)
Q Consensus 395 ~~i~~~i~~l~~~~~~ 410 (411)
++++++++.|++++++
T Consensus 418 e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 418 DFAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 201
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.84 E-value=1.1e-19 Score=172.97 Aligned_cols=314 Identities=13% Similarity=0.096 Sum_probs=191.6
Q ss_pred CcHHHHHHHHHHHHcCC-C-CC---CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGT-S-FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~-~-~~---~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+|++++++.++++.+. . ++ +..++.+++.+.+++.++ .+++++++||++|+..+++.+ ...+++.|++..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g-~~~~i~~~~gt~al~~~~~~~-~~~~gd~Vl~~~~~ 91 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG-VPYCVPTTSGSTALMLALEAL-GIGEGDEVIVPSLT 91 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHT-TCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCc
Confidence 47899999999998742 1 21 224557888888888875 347888999999999999853 13456789999999
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
|++.... ....|..+..++.....+.. |++++++.++ +++++|++++ ++|...+ ++
T Consensus 92 ~~~~~~~-~~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 92 WIATATA-VLNVNALPVFVDVEADTYCI-------------DPQLIKSAIT---DKTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp CTHHHHH-HHHTTCEEEEECBCTTTCSB-------------CHHHHGGGCC---TTEEEECCBC---CTTCCCC----HH
T ss_pred cHhHHHH-HHHcCCEEEEEecCCCCCCc-------------CHHHHHHhhC---CCCeEEEEeC---CcCCccc----HH
Confidence 9876543 33445544443322111110 8888888776 3577777643 4677666 99
Q ss_pred HHHHHHHHhCCEEEEecccccc-cc-ccCccccccCCCcchhhh--hhhccCCcccccccc-cHHHHHHhcCCCCc----
Q 015230 208 AIRRITKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGPM---- 278 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~g~-~~-g~~~~~~~~~~~~d~~~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~---- 278 (411)
+|.++|++||++||+||+|+.+ .. +.. ...++ +.++.|| +|++++| ++|++++ ++++++.+......
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQR--AGTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEE--TTSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCEe--ccccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 9999999999999999999854 22 211 11111 2445577 9999887 9999988 47776655421000
Q ss_pred ----------cc--c---c----CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE-eeec
Q 015230 279 ----------YQ--A---G----TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYIS 338 (411)
Q Consensus 279 ----------~~--~---~----t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g 338 (411)
+. . . ....+++.++.....++.+ ++..++.+++.+++.+.|+++ +..... ...+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~ 297 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSKI----DGIKVMKRPPQ 297 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTS----TTEEECCCCTT
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC----CCcccCCCCCC
Confidence 10 0 0 0112333333332222221 344555666666666666543 222111 1112
Q ss_pred ----c--eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHc-CeE---eccCCC-------------------------
Q 015230 339 ----G--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVY---FAPSQF------------------------- 383 (411)
Q Consensus 339 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~---v~~~~~------------------------- 383 (411)
. ++.+.+.+... ...+..++.+.|.++ ||. +.++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 368 (418)
T 2c81_A 298 VSRQTYYGYVFRFDPVKF---------GGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEA 368 (418)
T ss_dssp EEECCCSEEEEEECGGGT---------TTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHH
T ss_pred CcccccEEEEEEEccccc---------cccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccccc
Confidence 2 23355532000 011236889999999 999 765421
Q ss_pred ---------------cceeee--cCC-CHHHHHHHHHHHHHHHHhC
Q 015230 384 ---------------EAGFTS--LAH-SSDDIQHTITAAEKVLRQI 411 (411)
Q Consensus 384 ---------------~~~~~~--~~~-t~~~i~~~i~~l~~~~~~~ 411 (411)
..+|++ ..+ |++|+++++++|+++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 369 YWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 135664 466 9999999999999988753
No 202
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.84 E-value=7.6e-20 Score=175.63 Aligned_cols=297 Identities=11% Similarity=0.039 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhhCC-CCCEEEEeCChH-HHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCC-CC
Q 015230 76 LLENVLAEMVISAVP-SIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD-SP 152 (411)
Q Consensus 76 ~~~~~l~~~l~~~~~-~~~~v~~~~~g~-~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 152 (411)
+..+++.+++++.++ ..+ ++||+||+ .++..++..++...+++.||+.++.|+. ...++...|.++..++... ..
T Consensus 133 ~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s-~~~~~~~~G~~~~~v~~~~~~~ 210 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS-PIKAVSFVGMNMRLVETVLDGD 210 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHH-HHHHHHHcCCCceEEEEeccCC
Confidence 455778899999997 444 99999999 5666666654333344556767775554 4444444555444433210 01
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHH-HcC-CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFR 230 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~-~~~-~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~ 230 (411)
. .. -|++++++++ +.. ..++.+|++...++++|.+.+ +++|.++|++||+++++||+|+++.
T Consensus 211 ~---------~~---~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~ 274 (456)
T 2z67_A 211 R---------VY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN 274 (456)
T ss_dssp E---------EE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred C---------CC---cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH
Confidence 0 01 1899999999 420 125666666666667888888 9999999999999999999997551
Q ss_pred ccc-CccccccCCCcchh--hhhhhccCCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 231 LAY-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 231 ~g~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
.|. ......+...+|++ +++|++++++++|++++ ++++++.+.+ .+.+.....+.+++.++...+..-.-++.
T Consensus 275 ~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~~~~~~~~~~aal~~l~~~~~~~~ 351 (456)
T 2z67_A 275 NYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRASATPVVNTLVSLLSMGSKNYLEL 351 (456)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCBCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111111145544 67898887788999988 5777777753 22222211123333333333321111567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe---Eec----
Q 015230 307 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA---- 379 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~v~---- 379 (411)
.++..++.+++.+.|+++....+.... ... .++++.+.... . ..++.+.|.++|+ .+.
T Consensus 352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~-~~~-~~v~~~~~~~~----------~---~~~l~~~L~~~gi~~~rv~~~~g 416 (456)
T 2z67_A 352 VKNQKNSKKLLDELLNDLSKKTGGKFL-DVE-SPIASCISVNS----------D---PVEIAAKLYNLRVTGPRGIKKTD 416 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBC-CCC-CSSEEEEECSS----------C---HHHHHHHHHHTTEESCEEECTTC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCEec-CCC-CeEEEEEeccc----------H---HHHHHHHHHHcCCCcceEEeecC
Confidence 788889999999999887322222111 122 55666652111 0 2567888999886 332
Q ss_pred --------cCCCcceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 380 --------PSQFEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 380 --------~~~~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
....+.+|++ ..+|++++++++++|++++
T Consensus 417 ~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 417 HFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred ccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 1112345664 4579999999999998764
No 203
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=1e-19 Score=171.23 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=178.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+.....+++.+.+++.++. +++++++||++|+..+++ . ..+++.|++..+.|++.........
T Consensus 52 ~~~~~~~~lr~~la~~~g~-~~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 114 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA-QYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA------------- 114 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS-------------
T ss_pred CCChhHHHHHHHHHHHhCC-CcEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHH-------------
Confidence 3456677888888888853 367777788999999998 3 3456789999988886432211000
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHh----CCEEEEeccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTG 228 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~----~~~li~De~~~g 228 (411)
...+..+..++.+| ++++++++ +++++|++++++|++|.+.+ +++|.++|++| |+++|+||+|+.
T Consensus 115 ---~~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~ 183 (393)
T 1n8p_A 115 ---NAHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLS 183 (393)
T ss_dssp ---TTTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTH
T ss_pred ---HHcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCccc
Confidence 01123455566557 88888776 46889999999999999998 99999999999 999999999985
Q ss_pred c-ccccCccccccCCCcchhhhhhhccC-Cccc-cccccc-HHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC
Q 015230 229 F-RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304 (411)
Q Consensus 229 ~-~~g~~~~~~~~~~~~d~~~~sK~~~~-G~~~-g~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~ 304 (411)
+ .. ... .++.+.-+.|++|.+++ |+|+ |+++++ +++++.+.... .......++..++++.++++.+ +
T Consensus 184 ~~~~-~~~---~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~---~~~g~~~~~~~~~~~~~~l~~~--~ 254 (393)
T 1n8p_A 184 PYIS-NPL---NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ---NAIGAIPSPFDAWLTHRGLKTL--H 254 (393)
T ss_dssp HHHC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHTTH--H
T ss_pred cccC-CHH---HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhccchH--H
Confidence 5 32 221 12333334489999995 8898 888874 78877775311 1112234566666655555432 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCC-ceEE------------------ee-e-cceEEEEEecCCCCCcchhcccchHH
Q 015230 305 GTYEYLNKITGELTQGIIDAGKKAGH-AICG------------------GY-I-SGMFGFFFTEGPVYNFEDAKKSETTK 363 (411)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~------------------~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (411)
...++..++...+.+.|++. +. ...+ ++ . |.+++|.+.. ...+
T Consensus 255 ~~~~~~~~~~~~l~~~L~~~----~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~------------~~~~ 318 (393)
T 1n8p_A 255 LRVRQAALSANKIAEFLAAD----KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKG------------GAEA 318 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTSC----TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESS------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCC------------cHHH
Confidence 23344555556666655543 21 1111 12 4 7788888842 1233
Q ss_pred HHHHHHHHHHcCeEeccCC---------------------------Ccceeee--cCCCHHHHHHHHHHHHHHH
Q 015230 364 FARFYRGMLEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 364 ~~~~~~~l~~~Gi~v~~~~---------------------------~~~~~~~--~~~t~~~i~~~i~~l~~~~ 408 (411)
...+...+...++.++.++ ...+|++ ...++++++.+.++|+++.
T Consensus 319 ~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 319 ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 4556666544444433221 1235665 4557788888888887653
No 204
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.84 E-value=5.5e-21 Score=180.00 Aligned_cols=276 Identities=11% Similarity=0.011 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHhhCC--CC-CEEEEeCChHHHHHHHHHHHHhccCCc----EEEEEeCCcCCCchhhhhhcCCCCcccC
Q 015230 75 CLLENVLAEMVISAVP--SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 147 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~--~~-~~v~~~~~g~~a~~~al~~~~~~~~~~----~vi~~~~~~~~~~~~~~~~~g~~~~~~~ 147 (411)
.++++.+++++...-. .+ ++|++|+|+++++..+++.. ..+++ .|++.+++|+... ......|..+..+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~-~~~~~~g~~~~~~- 146 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYV-EETTYVRSGMYKW- 146 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHH-HHHHTTCBTTEEE-
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHH-HHHHHcCCeEEEe-
Confidence 5667777877763211 24 69999999999999998754 23455 7889888887533 3333333322221
Q ss_pred CCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC--CEEEEecc
Q 015230 148 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 225 (411)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~--~~li~De~ 225 (411)
+. |.+.++ . .++++++++..+|++|.+.. +|.+ ++|+ ++||+||+
T Consensus 147 ------------------~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~~------~l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 147 ------------------EG-DAWGFD----K--KGPYIELVTSPNNPDGTIRE------TVVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ------------------EE-ESTTCC----C--CSCEEEEEESSCTTTCCCCC------CCC-------CCCEEEEECT
T ss_pred ------------------cC-CHHHcC----C--CCCEEEEECCCCCCCchhHH------HHHH--HhhcCCCEEEEeCC
Confidence 11 111111 1 24555555444556666653 2333 2266 99999999
Q ss_pred ccccccccCccccccCCCcchhhhhhhcc-CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh-
Q 015230 226 MTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 302 (411)
Q Consensus 226 ~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~- 302 (411)
|..-.. ..... ..+....+.||||.++ .|+|+||+++ ++++++.+.. .....+++.+.+++.++.++++...
T Consensus 194 y~~~~~-~~l~~-~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~ 268 (391)
T 3bwn_A 194 YYWPHY-TPITR-RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLKE 268 (391)
T ss_dssp TCSTTT-SCCCC-CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-Ccccc-CCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcch
Confidence 972010 11111 1233344569999998 7999999986 8888887763 1222246778898988888887542
Q ss_pred ---------c--CChHHHHHHHHHHHHHHHHHHHHhcCCc----eE-------EeeecceEEEEEecCCCCCcchhcccc
Q 015230 303 ---------E--PGTYEYLNKITGELTQGIIDAGKKAGHA----IC-------GGYISGMFGFFFTEGPVYNFEDAKKSE 360 (411)
Q Consensus 303 ---------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~ 360 (411)
. +++++.++++.+++.+.|+++ ....+. .. ....|+++|+.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------ 335 (391)
T 3bwn_A 269 TCKSESESENFFKYGREMMKNRWEKLREVVKES-DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------ 335 (391)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC-SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccccccccccCCCcceEEEecCCcH------------
Confidence 1 344555666666666666553 101110 00 123466888887421
Q ss_pred hHHHHHHHHHHHHcCeEeccCC-----CcceeeecCCCHHHHHHHHHHHHHHHH
Q 015230 361 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 361 ~~~~~~~~~~l~~~Gi~v~~~~-----~~~~~~~~~~t~~~i~~~i~~l~~~~~ 409 (411)
..+.+.|.++||.+.++. .+.+|+++..+++++++++++|+++++
T Consensus 336 ----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 336 ----TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKL 385 (391)
T ss_dssp ----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC-
T ss_pred ----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 346677889999999873 346899988899999999999987654
No 205
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.83 E-value=2.5e-20 Score=173.66 Aligned_cols=308 Identities=9% Similarity=-0.039 Sum_probs=187.2
Q ss_pred CCcHHHHHHHHHHHHcCC-----CCCC---C---CHHHHHHHHHHHhhCC-C-CCEEEEeCCh-HHHHHHHHHHHHhccC
Q 015230 52 HADDQVLAALGETMKKGT-----SFGA---P---CLLENVLAEMVISAVP-S-IEMVRFVNSG-TEACMGVLRLARAFTG 117 (411)
Q Consensus 52 ~~~~~v~~a~~~~l~~~~-----~~~~---~---~~~~~~l~~~l~~~~~-~-~~~v~~~~~g-~~a~~~al~~~~~~~~ 117 (411)
..++.+++++.+.++... .+.. . .+..+++.+++++.++ . ++++++|+|+ ++|+..++.......+
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~ 92 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGT 92 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCC
Confidence 368899999999886520 0101 1 2346788899988887 3 4699999998 9999998864321112
Q ss_pred CcEEEEE-eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHH-HHHcCCCcEEEEEEcccCCC
Q 015230 118 RERIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 118 ~~~vi~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~~~~vi~~~~~~~ 195 (411)
++++|+. ..+|+. .......| .+..++.....+. .|++++++ .++ +++++|++++++|+
T Consensus 93 ~g~~vi~~~~~~~~--~~~~~~~g-~~~~v~~~~~~~~-------------~d~~~l~~~~i~---~~~k~v~~~~~~np 153 (360)
T 1w23_A 93 IGNYVLTGSWSEKA--LKEAKLLG-ETHIAASTKANSY-------------QSIPDFSEFQLN---ENDAYLHITSNNTI 153 (360)
T ss_dssp EEEEEECSHHHHHH--HHHHHTTS-EEEEEEECGGGTS-------------CSCCCGGGCCCC---TTEEEEEEESEETT
T ss_pred cccEEEecchhHHH--HHHHHHhC-CeEEeecccccCc-------------CCccchHhhccC---CCCCEEEEeCCCCC
Confidence 2333333 323322 11122234 3333322110111 15555665 553 46788888887888
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
+|.+.+ +++++||++||+||+|+.+ ... .... .+.-+.++||.++.+ .+||+++++++++.+.+
T Consensus 154 tG~~~~---------~i~~~~~~~li~D~a~~~~~~~~---~~~~--~di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~~ 218 (360)
T 1w23_A 154 YGTQYQ---------NFPEINHAPLIADMSSDILSRPL---KVNQ--FGMIYAGAQKNLGPS-GVTVVIVKKDLLNTKVE 218 (360)
T ss_dssp TTEECS---------SCCCCCSSCEEEECTTTTTSSCC---CGGG--CSEEEEETTTTTSCT-TCEEEEEEHHHHCSCCT
T ss_pred cceecc---------cccccCCceEEEechhhcCCCCc---Cccc--CCEEEEEcccccCCC-CcEEEEEcHHHHhhccc
Confidence 888754 1223899999999999743 211 1111 122234788999731 38999999988876654
Q ss_pred CCCcc--------cccC-CCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC-CceE---Ee-e
Q 015230 275 AGPMY--------QAGT-LSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-HAIC---GG-Y 336 (411)
Q Consensus 275 ~~~~~--------~~~t-~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~-~ 336 (411)
..+.. ...+ .+.+..+++++.++++.+.+ ++++++++++.+++.+.|+++ + +... .. .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~ 294 (360)
T 1w23_A 219 QVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYVGHAEKGSR 294 (360)
T ss_dssp TCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSEESSCGGGB
T ss_pred CCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCcccccCCchhc
Confidence 22111 0112 34466666677777776543 345666777777777777654 3 2111 11 1
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.++++.+. ...+..++.+.|.++||.+.++. .+.+|+++. .+++++++++++|++++++
T Consensus 295 ~~~~~~~~~~-------------~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 295 SLMNVTFNLR-------------NEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CSSEEEEECS-------------SHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEcC-------------CCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 2447888762 22334678888999999998874 246888654 6999999999999998764
No 206
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.83 E-value=3.4e-19 Score=170.36 Aligned_cols=308 Identities=14% Similarity=0.073 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH------h-ccCCcEEEEEeC
Q 015230 54 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR------A-FTGRERIIKFEG 126 (411)
Q Consensus 54 ~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~------~-~~~~~~vi~~~~ 126 (411)
++++++++.+++..+. .++.....++.+.+++.++ .+++++++||++|+..+++.+. . ..+++.|++..+
T Consensus 42 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~g-~~~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~ 118 (437)
T 3bb8_A 42 GTKELQLMVEASLDGW--LTTGRFNDAFEKKLGEYLG-VPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAA 118 (437)
T ss_dssp CHHHHHHHHHHHHHCC--CBSCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSS
T ss_pred CHHHHHHHHHHHHcCC--cCCChHHHHHHHHHHHHHC-CCcEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCC
Confidence 6889999999988642 2345667778888888774 4488999999999999998641 0 345678999999
Q ss_pred CcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHH
Q 015230 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 206 (411)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l 206 (411)
+|++..... ...|..+..++.....+. + |++++++.++ +++++|++.. +.|...+ +
T Consensus 119 ~~~~~~~~~-~~~g~~~~~v~~~~~~~~----------~---d~~~l~~~i~---~~~~~v~~~~---~~g~~~~----~ 174 (437)
T 3bb8_A 119 GFPTTVNPT-IQNGLIPVFVDVDIPTYN----------V---NASLIEAAVS---DKTKAIMIAH---TLGNLFD----L 174 (437)
T ss_dssp SCHHHHHHH-HHTTCEEEECCEETTTTE----------E---CGGGHHHHCC---TTEEEEEEEC---GGGCCCC----H
T ss_pred CcHHHHHHH-HHcCCEEEEEeccCccCC----------c---CHHHHHHhcC---CCCeEEEEeC---CCCChhc----H
Confidence 988755443 334443333322110010 1 7888888876 3567776643 2344455 9
Q ss_pred HHHHHHHHHhCCEEEEecccc-cc-ccccCccccccCCCcch--hhhhhhcc-CCcccccccccHHHHHH----hcCCCC
Q 015230 207 NAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDL--TTLGKIIG-GGLPVGAYGGRRDIMEM----VAPAGP 277 (411)
Q Consensus 207 ~~i~~l~~~~~~~li~De~~~-g~-~~g~~~~~~~~~~~~d~--~~~sK~~~-~G~~~g~~~~~~~~~~~----~~~~~~ 277 (411)
++|.++|++||+++|+||+|+ |. ..+ ..++..+|+ .||+|+.+ +|.+.|+++++++.+.. +.....
T Consensus 175 ~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~~~~~ 249 (437)
T 3bb8_A 175 AEVRRVADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRDWGR 249 (437)
T ss_dssp HHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTB
T ss_pred HHHHHHHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHHHhCc
Confidence 999999999999999999998 43 211 223333566 45555444 45578888887554332 111100
Q ss_pred c-------------------------c--------cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 015230 278 M-------------------------Y--------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA 324 (411)
Q Consensus 278 ~-------------------------~--------~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (411)
. + .+.....++++++++.+.++.+ ++..++.+++.+++++.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~~~~~~~~~~~~~l~~~L~~~ 327 (437)
T 3bb8_A 250 DCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--EEFVEKRKANFKYLKDALQSC 327 (437)
T ss_dssp CC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHGGGG
T ss_pred ccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc
Confidence 0 0 1112234678888888777655 344555677777777777654
Q ss_pred HHhcCCceEE-----eeecc-eEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc--------------
Q 015230 325 GKKAGHAICG-----GYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------- 384 (411)
Q Consensus 325 ~~~~~~~~~~-----~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-------------- 384 (411)
. +..... ...+. .+.+.+.. +...+...+.+.|.++||.++++..+
T Consensus 328 ~---g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~ 393 (437)
T 3bb8_A 328 A---DFIELPEATENSDPSWFGFPITLKE-----------DSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYR 393 (437)
T ss_dssp T---TTEECCCCCTTEECCCSSEEEEECG-----------GGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCE
T ss_pred C---CccccCCCCCCCceeeEEEEEEECC-----------cCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccCcc
Confidence 1 111110 01121 12222211 10112368999999999999876321
Q ss_pred --------------ceeee--cCCCHHHHHHHHHHHHHHHH
Q 015230 385 --------------AGFTS--LAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 385 --------------~~~~~--~~~t~~~i~~~i~~l~~~~~ 409 (411)
.+|++ ..+|++|++++++.|+++++
T Consensus 394 ~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 394 VVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp ECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 14554 56699999999999998765
No 207
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.83 E-value=2.3e-19 Score=167.22 Aligned_cols=305 Identities=11% Similarity=-0.009 Sum_probs=191.5
Q ss_pred CcHHHHHHHHHHHHcCC---------CCCCC--CHHHHHHHHHHHhhCC-CCC-E-EEEeCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVP-SIE-M-VRFVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~---------~~~~~--~~~~~~l~~~l~~~~~-~~~-~-v~~~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+|++++++.+.+.+.. ...++ .+..+++.+++++.++ ..+ + +++|+||++++..+++.. ..++
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 78999999999886421 11111 3356789999999887 332 6 467899999999999753 3456
Q ss_pred cEEEEEeCCcCCCc-hhhhhhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 119 ERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 119 ~~vi~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
+.|++.++++++.. .......| .+..++... ..+... |.++++ ++ +++++|++.+++++
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~------------~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLP------------KLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCC------------CGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCC------------CHHHcc--cC---CCcCEEEEeCCcCc
Confidence 77888776655432 12233345 555443321 111100 333332 22 46788887777778
Q ss_pred CCcc-CCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHHHHhc
Q 015230 196 SGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 196 ~G~~-~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~~~~~ 273 (411)
+|.. .+ +++| ||+++|+||+|+.+. ....+. ..+.-+.+++|+++ .| +||+++++++++.+.
T Consensus 155 tG~~~~~----l~~i------~~~~vivD~a~~~~~--~~~~~~--~~d~~~~s~~K~~g~~G--~G~l~~~~~~~~~l~ 218 (362)
T 2c0r_A 155 EGAQFKA----FPDT------GSVPLIGDMSSDILS--RPFDLN--QFGLVYAGAQKNLGPSG--VTVVIVREDLVAESP 218 (362)
T ss_dssp TTEECSS----CCCC------TTSCEEEECTTTTTS--SCCCGG--GCSEEEEETTTTTCCSS--CEEEEEEGGGSSSCC
T ss_pred cceeccc----cccc------CCCEEEEEChhhccC--Cccchh--HCcEEEEeccccccCcC--cEEEEEcHHHHhhcc
Confidence 8884 54 5555 899999999997221 011111 12222448899997 35 899999988876665
Q ss_pred CCCCccc---------ccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcC-C-ceEE---e
Q 015230 274 PAGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-H-AICG---G 335 (411)
Q Consensus 274 ~~~~~~~---------~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~~---~ 335 (411)
+..+.+. ...++.+..+++++.++++.+.+ ++.+++.+++.+++.+.|+++ + + .... .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~ 294 (362)
T 2c0r_A 219 KHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS----GGFYRGCVDVDS 294 (362)
T ss_dssp TTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS----TTSSEESSCGGG
T ss_pred ccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc----CCccccCCChHH
Confidence 3211111 22356777888888888876543 455666777777777777654 3 2 1100 1
Q ss_pred eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--CcceeeecC--CCHHHHHHHHHHHHHHHHh
Q 015230 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~~~--~t~~~i~~~i~~l~~~~~~ 410 (411)
..+.++++.+ +...+..++.+.|.++||.+.++. ...+|+++. +|+++++++++.|++++++
T Consensus 295 ~~~~~~~~~~-------------~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 295 RSDMNITFRL-------------ASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp BCSSEEEEEC-------------SCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEc-------------CCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 2244566655 223345788999999999887753 235788654 5899999999999988764
No 208
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.83 E-value=8.5e-20 Score=176.38 Aligned_cols=321 Identities=18% Similarity=0.126 Sum_probs=194.6
Q ss_pred EEeccCCccccccCCCcHHHHHHHHHHHHcCC--CC------CC---CCHHHHHHHHHHHhhCC-CCC----EEEEeCCh
Q 015230 38 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF------GA---PCLLENVLAEMVISAVP-SIE----MVRFVNSG 101 (411)
Q Consensus 38 ~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~~~--~~------~~---~~~~~~~l~~~l~~~~~-~~~----~v~~~~~g 101 (411)
.++++++ . +..++.+++++.+.+.+.. ++ ++ ..++++.+.+++++.++ ..+ .|+++ +|
T Consensus 46 ~i~L~a~---e--~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~-sG 119 (483)
T 1rv3_A 46 GLELIAS---E--NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SG 119 (483)
T ss_dssp SEECCTT---C--CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SH
T ss_pred CeEEEcC---C--CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC-Cc
Confidence 4666655 2 2368999999999887632 11 11 13455677789999997 443 25555 56
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhh-------hhcCCCCcccCCCC--CCCCCCCCCCceeecCCCCHHH
Q 015230 102 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL-------VKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSA 172 (411)
Q Consensus 102 ~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~ 172 (411)
++++.+++... ..+++.|++.++.|.+...... ...|..+..++.+. ..+. -|+++
T Consensus 120 s~an~~~~~al--l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~-------------iD~d~ 184 (483)
T 1rv3_A 120 SPANFAVYTAL--VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGY-------------IDYDR 184 (483)
T ss_dssp HHHHHHHHHHH--TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCS-------------BCHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCc-------------CCHHH
Confidence 68888877643 4567889999988877643221 11111111111110 0111 18999
Q ss_pred HHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchh--
Q 015230 173 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT-- 247 (411)
Q Consensus 173 l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~-- 247 (411)
+++.+++. ++++|++ ..++++ .+.+ +++|+++|++||++||+|++|. |+ ..+.. .... ..|++
T Consensus 185 le~~i~~~--~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~ 252 (483)
T 1rv3_A 185 LEENARLF--HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTT 252 (483)
T ss_dssp HHHHHHHH--CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEE
T ss_pred HHHHHhhc--CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEe
Confidence 99999742 4667777 444444 5666 9999999999999999999996 55 33321 1111 23544
Q ss_pred hhhhhccCCcccccccccHH---------------HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHH
Q 015230 248 TLGKIIGGGLPVGAYGGRRD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEY 309 (411)
Q Consensus 248 ~~sK~~~~G~~~g~~~~~~~---------------~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~ 309 (411)
|++|+|+ |+|.|+++++++ +.+.+... .+.+...+.+....++..++++.+.. ++++++
T Consensus 253 s~~K~l~-GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~--~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~ 329 (483)
T 1rv3_A 253 TTHKTLR-GCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA--VFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQ 329 (483)
T ss_dssp ESSGGGC-CCSCEEEEEECSBCC-------CCBCCHHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cCcccCC-CCCceEEEEcchhhhhccccCcchhhHHHHHhhhh--cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 6789995 668899988764 22322210 00111223344455555556665543 566777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEec----cCC--
Q 015230 310 LNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ-- 382 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~~-- 382 (411)
++++.+++.+.|+++ ++.....+ ...++++++.... .+...+.+.|.+.||.+. |+.
T Consensus 330 ~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~v~~~~~g------------~~~~~~~~~L~~~gI~v~~~~~pg~~~ 393 (483)
T 1rv3_A 330 VVANCRALSAALVEL----GYKIVTGGSDNHLILVDLRSKG------------TDGGRAEKVLEACSIACNKNTCPGDKS 393 (483)
T ss_dssp HHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEEGGGGT------------CCHHHHHHHHHHTTEECEEECCSSCSC
T ss_pred HHHHHHHHHHHHHhc----CCEeccCCCCCceEEEeccCCC------------CCHHHHHHHHHhCCcEEecCCCCCCCc
Confidence 888888888888765 32211111 1246667663211 123567788889999998 753
Q ss_pred ---CcceeeecC--CC----HHHHHHHHHHHHHHHHh
Q 015230 383 ---FEAGFTSLA--HS----SDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ---~~~~~~~~~--~t----~~~i~~~i~~l~~~~~~ 410 (411)
...+|+++. +| ++++++++++|.++++.
T Consensus 394 ~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 394 ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 234777432 35 89999999999988753
No 209
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.83 E-value=8.4e-19 Score=165.18 Aligned_cols=303 Identities=14% Similarity=0.108 Sum_probs=191.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHH-----hccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~-----~~~~~~~vi~~~~~ 127 (411)
-+|++++++.++++.+. .++.....++.+.+++.++ .++++++++|++|+..+++.++ ...+++.|++..++
T Consensus 13 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~~-~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM--FTMGEYVKQYETQFAKTFG-SKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 57899999999998742 2345666777788877774 4478999999999999998642 14456789999999
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~ 207 (411)
|++..... ...|..+..++.....+.. |++++++.++ +++++|++.+ +.|...+ ++
T Consensus 90 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~-------------d~~~l~~~i~---~~~~~v~~~~---~~g~~~~----~~ 145 (390)
T 3b8x_A 90 WSTTYYPL-QQYGLRVKFVDIDINTLNI-------------DIESLKEAVT---DSTKAILTVN---LLGNPNN----FD 145 (390)
T ss_dssp CHHHHHHH-HHTTCEEEEECBCTTTCSB-------------CHHHHHHHCC---TTEEEEEEEC---GGGCCCC----HH
T ss_pred cHHHHHHH-HHcCCEEEEEecCccccCc-------------CHHHHHHHhC---cCCeEEEEEC---CccChhh----HH
Confidence 98765543 3445444443322110111 8999998886 3567776642 3455556 99
Q ss_pred HHHHHHHHhCCEEEEecccc-ccccccCccccccCCCcchhhhhhhcc----CCcccccccccH-HHHHHhc---CCC--
Q 015230 208 AIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMVA---PAG-- 276 (411)
Q Consensus 208 ~i~~l~~~~~~~li~De~~~-g~~~g~~~~~~~~~~~~d~~~~sK~~~----~G~~~g~~~~~~-~~~~~~~---~~~-- 276 (411)
+|.++|++||+++|+||+|+ |... ....++..+|+.++||..+ +| +.|++++++ ++.+.+. ...
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~----~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~~ 220 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATF----NNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGWT 220 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTBS
T ss_pred HHHHHHHHcCCEEEEECcCcccCEE----CCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 4311 1234566678877776443 22 347777764 5544332 111
Q ss_pred -C------------------cc----cccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 015230 277 -P------------------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC 333 (411)
Q Consensus 277 -~------------------~~----~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (411)
. .+ .+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+++ +....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~~~~ 294 (390)
T 3b8x_A 221 RNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL--PRFISVRRKNAEYFLDKFKDH----PYLDV 294 (390)
T ss_dssp TTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTC----SSEEE
T ss_pred ccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC----CCccc
Confidence 0 00 1122337788888887777655 356677777777777777653 22111
Q ss_pred Ee--eecce--EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC---C---C-c------------------
Q 015230 334 GG--YISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---Q---F-E------------------ 384 (411)
Q Consensus 334 ~~--~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---~---~-~------------------ 384 (411)
.. ....+ +++.+... ......++.+.|.++||.+.+. . . +
T Consensus 295 ~~~~~~~~~~~~~i~~~~~-----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKD-----------SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEY 363 (390)
T ss_dssp CCCCSBCCCCEEEEEECTT-----------SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHH
T ss_pred CCCCCCcccEEEEEEecCc-----------CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHH
Confidence 11 11222 44444311 0112367899999999998862 1 1 1
Q ss_pred ----ceeee--cCCCHHHHHHHHHHH
Q 015230 385 ----AGFTS--LAHSSDDIQHTITAA 404 (411)
Q Consensus 385 ----~~~~~--~~~t~~~i~~~i~~l 404 (411)
.+|++ ..+|++|++++++.|
T Consensus 364 ~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 364 LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 14554 567999999999876
No 210
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.82 E-value=2.1e-19 Score=170.29 Aligned_cols=284 Identities=16% Similarity=0.118 Sum_probs=181.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+......++.+++++.++ .+..++++||++|+..+++.+ ..+++.|++.++.|++.........
T Consensus 79 ~~~p~~~~le~~lA~l~g-~~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~------------- 142 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTG-ALGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTL------------- 142 (430)
T ss_dssp -CCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHH-------------
T ss_pred CCCHHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH-------------
Confidence 346777889999988885 455778889999999998753 4567889999999886544221000
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 232 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g 232 (411)
...+..+..++.+|+++++++++ +++++|+++.++|++|.+.+ +++|.++|++||++||+|++|+ .+
T Consensus 143 ---~~~G~~~~~v~~~d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~---~~ 209 (430)
T 3ri6_A 143 ---PSFGIEVRFVDVMDSLAVEHACD---ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT---PP 209 (430)
T ss_dssp ---HHTTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS---CT
T ss_pred ---HHcCCEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc---cc
Confidence 00122455666669999998886 46889999999899999988 9999999999999999999997 22
Q ss_pred cCccccccCCCcchhhhhhhccC-Ccccccc-c--ccHHH------------------HHHhcCCCCcccccCCCCCHHH
Q 015230 233 YGGAQEYFGVTPDLTTLGKIIGG-GLPVGAY-G--GRRDI------------------MEMVAPAGPMYQAGTLSGNPLA 290 (411)
Q Consensus 233 ~~~~~~~~~~~~d~~~~sK~~~~-G~~~g~~-~--~~~~~------------------~~~~~~~~~~~~~~t~~~~~~~ 290 (411)
.......++.+..+.|++|+++| |..+|.+ + .+..+ ++..+.. .........+++.
T Consensus 210 ~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~--~~~~~g~~~~~~~ 287 (430)
T 3ri6_A 210 YLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE--VFQNLGPSLSPHN 287 (430)
T ss_dssp TTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT--HHHHHCCCCCHHH
T ss_pred ccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH--HHHhcCCCCCHHH
Confidence 22222234555556689999996 5555554 4 22111 1221100 0011123346677
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe-----------------eecc-eEEEEEecCCCCC
Q 015230 291 MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGPVYN 352 (411)
Q Consensus 291 ~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------~~g~-~~~~~~~~~~~~~ 352 (411)
++.+...++.+. ...++..++..++.+.|++. |.+..+. +.|. +++|++.
T Consensus 288 a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~~----p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~------ 355 (430)
T 3ri6_A 288 AYLQSLGLETMA--LRIERSCQNAQELAHWLLSI----PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELE------ 355 (430)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC----TTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------
T ss_pred HHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhCC----CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC------
Confidence 766666665542 23455666777776666543 4333332 2356 9999984
Q ss_pred cchhcccchHHHHHHHHHHHHcCeEeccCCCcc---------------------------eeeecCCCHHHHHHHHHHHH
Q 015230 353 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---------------------------GFTSLAHSSDDIQHTITAAE 405 (411)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~---------------------------~~~~~~~t~~~i~~~i~~l~ 405 (411)
....+.++.+.++..++.+..|+... +|++ ...|+.+.+++.|+
T Consensus 356 -------~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls--vG~E~~~dl~~dl~ 426 (430)
T 3ri6_A 356 -------SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS--VGIEEIEDLKEDIL 426 (430)
T ss_dssp -------SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE--CCSSCHHHHHHHHH
T ss_pred -------CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE--eccCCHHHHHHHHH
Confidence 23445677777776677666664332 2333 33467788888888
Q ss_pred HHH
Q 015230 406 KVL 408 (411)
Q Consensus 406 ~~~ 408 (411)
+++
T Consensus 427 ~al 429 (430)
T 3ri6_A 427 QAL 429 (430)
T ss_dssp HHH
T ss_pred Hhh
Confidence 776
No 211
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.82 E-value=9.1e-19 Score=167.70 Aligned_cols=313 Identities=14% Similarity=0.060 Sum_probs=179.5
Q ss_pred CcHHHHHHHHHHHHcCC--CCC------C---CCHHHHHHHHHHHhhCC-CCC---EEEEeCChHHHHHHHHHHHHhccC
Q 015230 53 ADDQVLAALGETMKKGT--SFG------A---PCLLENVLAEMVISAVP-SIE---MVRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~--~~~------~---~~~~~~~l~~~l~~~~~-~~~---~v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
.+|+|++|+.+.+.+.. ++. + ...+++...+++++.++ ..+ ..++++||++|+..++... ..+
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al--~~p 143 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--LQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--CCS
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH--cCC
Confidence 68999999999887622 211 1 13445556688899997 333 3467779999999999743 456
Q ss_pred CcEEEEEeCCcCCCchh-------hhhhcCCCCcccCCCCC--CCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEE
Q 015230 118 RERIIKFEGCYHGHADP-------FLVKAGSGVATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 188 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi 188 (411)
++.|++.+..|.++... .....|......+++.. .+ .-|++++++.++.. ++++|+
T Consensus 144 GD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~-------------~iD~d~le~~l~~~--~~klIi 208 (490)
T 2a7v_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTG-------------LIDYNQLALTARLF--RPRLII 208 (490)
T ss_dssp CEECCC-------------------------------CCBCTTTC-------------SBCHHHHHHHHHHH--CCSEEE
T ss_pred CCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccC-------------CcCHHHHHHHHhhc--CCcEEE
Confidence 67788877776543211 11223332222111111 11 11899999998743 345666
Q ss_pred EcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchhhhhhhccCCccccccccc
Q 015230 189 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLTTLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 189 ~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~ 265 (411)
+...+ .|...+ +++|+++|++||++|++|++|. |+ ..|.. ..++ +.+.-+.|++|+++ |.+.|+++++
T Consensus 209 ~~~s~--~~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~-Gp~GG~i~~~ 279 (490)
T 2a7v_A 209 AGTSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLR-GARSGLIFYR 279 (490)
T ss_dssp ECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGC-SCSCEEEEEE
T ss_pred EcCCC--CCCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCc-cccchheeec
Confidence 54322 233445 9999999999999999999985 65 33321 1121 22222447899996 4467888776
Q ss_pred HH---------------HHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh
Q 015230 266 RD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 327 (411)
Q Consensus 266 ~~---------------~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 327 (411)
++ +.+.++.. .+.+.+.+++....++..+++..... ++..+++.++.+++.+.|++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~i~~~--~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~--- 354 (490)
T 2a7v_A 280 KGVKAVDPKTGREIPYTFEDRINFA--VFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER--- 354 (490)
T ss_dssp CSEEEEETTTEEEEECCCHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cchhcccccccchhhHHHHHHHHHH--hcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 53 33333311 11111122344444444445554432 567788889999999999875
Q ss_pred cCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C-----Ccceeee------cC
Q 015230 328 AGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFTS------LA 391 (411)
Q Consensus 328 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~~------~~ 391 (411)
++.....+ ...++++++.... .+..++.+.|.+.||.+..+ . ...+|+. ..
T Consensus 355 -G~~v~~~~t~t~lv~vdl~~~g------------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g 421 (490)
T 2a7v_A 355 -GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQ 421 (490)
T ss_dssp -TCEEGGGSCSSSEEEEECTTTT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTT
T ss_pred -CcEEecCCCCCeEEEEEeCCCC------------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCC
Confidence 32211111 2357777774321 12367888899999999742 1 1236762 35
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 015230 392 HSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~ 409 (411)
.+++|++++++.|.++++
T Consensus 422 ~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 422 FREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 689999999999988875
No 212
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.82 E-value=1.3e-19 Score=171.11 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCC
Q 015230 73 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 152 (411)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 152 (411)
+++....++.+.+++.++.. +.+++++|++|+..+++ . ..+++.|++.++.|++.........
T Consensus 64 ~~~p~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~------------- 126 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGAK-YCLAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVA------------- 126 (403)
T ss_dssp --CHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTG-------------
T ss_pred CCCchHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHH-------------
Confidence 34566677888888877544 55556678899999887 2 4567889999999987443221110
Q ss_pred CCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhC-CEEEEecccccccc
Q 015230 153 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRL 231 (411)
Q Consensus 153 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~-~~li~De~~~g~~~ 231 (411)
...+..+..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++|| +++|+||+|+++..
T Consensus 127 ---~~~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~ 196 (403)
T 3cog_A 127 ---SEFGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYF 196 (403)
T ss_dssp ---GGGTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTT
T ss_pred ---HHcCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccccc
Confidence 01123455666668999988886 46889999999999999998 999999999999 99999999985411
Q ss_pred ccCccccccCCCcchh--hhhhhccC-C-cccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCCh
Q 015230 232 AYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 306 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~--~~sK~~~~-G-~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~ 306 (411)
... .+..+|++ |++|++++ | .++|++++ ++++++.+.. .........+++.++++.+.++.+ +..
T Consensus 197 ~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r 266 (403)
T 3cog_A 197 QRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVR 266 (403)
T ss_dssp CCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHH
T ss_pred CCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHH
Confidence 111 12344554 89999985 4 57999988 4777777652 112224456788887777666533 222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015230 307 YEYLNKITGELTQGIID 323 (411)
Q Consensus 307 ~~~~~~~~~~~~~~l~~ 323 (411)
.++..++...+.+.+++
T Consensus 267 ~~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 267 MEKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34444455555555543
No 213
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.82 E-value=5.9e-18 Score=163.48 Aligned_cols=302 Identities=11% Similarity=-0.007 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHhhCCCC-----------CEEEEeCChHHHHHHHHHHHHhcc----------------CCcEEEEEeCC
Q 015230 75 CLLENVLAEMVISAVPSI-----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGC 127 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~-----------~~v~~~~~g~~a~~~al~~~~~~~----------------~~~~vi~~~~~ 127 (411)
.++++++.+|+.+.++-+ ...++|+|||+|+..++.+++... .++.+++.+..
T Consensus 117 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 196 (481)
T 4e1o_A 117 TELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc
Confidence 577889999999988622 367999999999999998775421 02334444555
Q ss_pred cCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHH
Q 015230 128 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.|.....+....|..++.++......+ |+++|++++++. ...+.+++++..++++|.+.+
T Consensus 197 ~H~s~~~~~~~~g~~~~~v~~~~~~~~--------------d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~--- 259 (481)
T 4e1o_A 197 AHSSVEKAGLISLVKMKFLPVDDNFSL--------------RGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC--- 259 (481)
T ss_dssp SCHHHHHHHHHHTCEEEEECCCTTSCC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---
T ss_pred chHHHHHHHHhCCCceEEEEcCCCCcC--------------CHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---
Confidence 554555555566666665554322122 899999999753 123667777777788898888
Q ss_pred HHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcccccccc-cHHHHHHhcCCCCcc
Q 015230 205 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMY 279 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~ 279 (411)
+++|.++|++||+++++|++|.+. .....+.....++ ..|.+ +.+|++++..-.|+++. ++..+.........+
T Consensus 260 -l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 -LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGG
T ss_pred -HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchh
Confidence 999999999999999999999754 3222111111232 13544 57899986444666644 444433221111111
Q ss_pred ccc----------------CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEE
Q 015230 280 QAG----------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFG 342 (411)
Q Consensus 280 ~~~----------------t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~ 342 (411)
... +.....+.+.+++..+..-.-++++++..++.+++.+.|+++ +.... ......+++
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~ 414 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----PSFEIPAKRHLGLVV 414 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTEECCSCCCSSEEE
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEE
Confidence 110 111234444444444321111566777888888888888764 22111 122345667
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcCeE-eccC---CCcceeee---cCCCHHHHHHHHHHHHHHHHh
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~-v~~~---~~~~~~~~---~~~t~~~i~~~i~~l~~~~~~ 410 (411)
|.+.. ......++.+.|.++|++ +.+. +...+|++ ..+|+++|++++++|++++++
T Consensus 415 f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 415 FRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76632 233457889999998844 4432 22346764 455899999999999988765
No 214
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.81 E-value=1.2e-18 Score=163.03 Aligned_cols=314 Identities=11% Similarity=0.055 Sum_probs=192.6
Q ss_pred CcHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH-HhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCC
Q 015230 53 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~ 131 (411)
.++++++++.+.++.+. +........++.+.+ ++.++..+++++++||++|+..+++.+ ...+++.||+..++|++.
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 56788999999998854 222245567888888 777753788999999999999999753 245678899999988864
Q ss_pred chhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHH
Q 015230 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 211 (411)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~ 211 (411)
. .+....|..+..++.....+.. |++++++++.....++++|+. + +.+|...+ +++|.+
T Consensus 92 ~-~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~~~~~~tk~v~~--~-~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 P-LAAIWCGLEPYFIDISIDDWYM-------------DKTVLWDKIEELKEEVAIVVP--Y-ATFGSWMN----LEEYEE 150 (377)
T ss_dssp H-HHHHHTTCEEEEECBCTTTCSB-------------CHHHHHHHHHHHGGGEEEECC--B-CGGGBCCC----CHHHHH
T ss_pred H-HHHHHcCCEEEEEecCCccCCc-------------CHHHHHHHHhcCCCCceEEEE--E-CCCCCccC----HHHHHH
Confidence 3 3344445544443332111111 899999988321112777763 3 34677777 899999
Q ss_pred HHHHhCCEEEEeccccccccccCcccccc-CCCcc--hhhh--hhhccCCcccccccc-cHHHHHHhcCCCC--------
Q 015230 212 ITKENGALLIFDEVMTGFRLAYGGAQEYF-GVTPD--LTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGP-------- 277 (411)
Q Consensus 212 l~~~~~~~li~De~~~g~~~g~~~~~~~~-~~~~d--~~~~--sK~~~~G~~~g~~~~-~~~~~~~~~~~~~-------- 277 (411)
+|+ ||++||+|++|+ .|........ +...| +.|| +|.+++| ..|+++. ++++.+.++....
T Consensus 151 la~-~~~~vi~D~a~a---~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~ 225 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPG---FGLMNGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRE 225 (377)
T ss_dssp HHH-TTCCBEEECTTC---TTCEETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTSC
T ss_pred HHh-cCCEEEEECCCc---cCCeECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCCc
Confidence 999 999999999997 1111111112 11123 3444 4998864 5666654 5666655542111
Q ss_pred -cccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh-cCCceEEeeec--ceEEEEEecCCCCCc
Q 015230 278 -MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICGGYIS--GMFGFFFTEGPVYNF 353 (411)
Q Consensus 278 -~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~g--~~~~~~~~~~~~~~~ 353 (411)
...+..+..+.+.++.+...++.+ ++..++.+++.+++.+.|+++..- .+......... .++.+.+.
T Consensus 226 ~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 296 (377)
T 3ju7_A 226 CTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP------- 296 (377)
T ss_dssp BCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-------
T ss_pred eeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-------
Confidence 011234566778777777766544 445677778888888888775210 11111000001 12233321
Q ss_pred chhcccchHHHHHHHHHHHHcCeEeccCCCc-------------------------ceeee--cCCCHHHHHHHHHHHHH
Q 015230 354 EDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTITAAEK 406 (411)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~-------------------------~~~~~--~~~t~~~i~~~i~~l~~ 406 (411)
.....+.+.+.|.++||.+...... .+++| ...|++|++++++.|++
T Consensus 297 ------~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 297 ------EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp ------TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred ------ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 1112478999999999988765311 04554 46699999999999987
Q ss_pred HHH
Q 015230 407 VLR 409 (411)
Q Consensus 407 ~~~ 409 (411)
++.
T Consensus 371 ~~~ 373 (377)
T 3ju7_A 371 KVV 373 (377)
T ss_dssp ---
T ss_pred HHh
Confidence 754
No 215
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.81 E-value=1.7e-17 Score=161.32 Aligned_cols=314 Identities=13% Similarity=0.021 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHhhCC-C--CCEEEEeCChHHHHHHHHHHHHhcc-------C----CcEEEEEeCCcCCCchhhhhhcC
Q 015230 75 CLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G----RERIIKFEGCYHGHADPFLVKAG 140 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~--~~~v~~~~~g~~a~~~al~~~~~~~-------~----~~~vi~~~~~~~~~~~~~~~~~g 140 (411)
.++++++.+|+++.++ . .+.++||+||++|+..++..++... + ++.+|+.+...|.....+....|
T Consensus 134 ~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g 213 (511)
T 3vp6_A 134 VLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG 213 (511)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcC
Confidence 5667889999999887 3 4699999999999999998765421 1 24445555555555555555555
Q ss_pred C---CCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHH
Q 015230 141 S---GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 214 (411)
Q Consensus 141 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~ 214 (411)
. .+..++......+ |+++|++++++. ...+++|+++.+++++|.+.+ +++|.++|+
T Consensus 214 ~g~~~~~~v~~d~~~~~--------------d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~ 275 (511)
T 3vp6_A 214 FGTDNVILIKCNERGKI--------------IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICE 275 (511)
T ss_dssp SCGGGEEEECBCTTSCB--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHH
T ss_pred CCCCcEEEeecCCCCcc--------------CHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHH
Confidence 5 3333332211111 899999999752 223788888888888999987 999999999
Q ss_pred HhCCEEEEecccccc-ccccCccccccCC-Ccch--hhhhhhccCCcccccccc-cHHHHHHhcCCCCccccc-------
Q 015230 215 ENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDL--TTLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAG------- 282 (411)
Q Consensus 215 ~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~--~~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~------- 282 (411)
+||+++++|++|++. .....+.....++ ..|. .+.+|++++..-.|+++. ++.++.......+.+...
T Consensus 276 ~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 355 (511)
T 3vp6_A 276 KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDV 355 (511)
T ss_dssp HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCG
T ss_pred HcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccccc
Confidence 999999999999854 3222111111122 2354 367899986445777755 444544432111111110
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE---eeecceEEEEEecC
Q 015230 283 -----------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG---GYISGMFGFFFTEG 348 (411)
Q Consensus 283 -----------t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~g~~~~~~~~~~ 348 (411)
+-....+.+.+++..+..-.-++++++..++.+++++.|+++ +..... .+...++.|.+...
T Consensus 356 ~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----pg~~l~~~~~p~~~~v~f~~~p~ 431 (511)
T 3vp6_A 356 SYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQ 431 (511)
T ss_dssp GGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----TTEEESSSSCCSSSCEEEEECCG
T ss_pred ccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCc
Confidence 001233444444444321111567788888888888888764 222111 13345566655322
Q ss_pred CCCCcchh---cccchHHHHHHHHHHHHcCeEeccC-----CCcceee---ecCCCHHHHHHHHHHHHHHHHh
Q 015230 349 PVYNFEDA---KKSETTKFARFYRGMLEEGVYFAPS-----QFEAGFT---SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 349 ~~~~~~~~---~~~~~~~~~~~~~~l~~~Gi~v~~~-----~~~~~~~---~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
........ .........++.+.|.++|+++... +...+|+ +..+++++|+.+++.|+++-+.
T Consensus 432 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 432 SLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp GGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 11110000 0000112347889999998654331 1124676 3567999999999999987554
No 216
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.81 E-value=4.2e-20 Score=176.70 Aligned_cols=287 Identities=11% Similarity=-0.014 Sum_probs=174.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+.....++.+++++ ++..+.+++++|+++|+..+++.+ ..+++.|++..++|++... ++...|..+..++......
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~~~-~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSVLH-ALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHHHH-HHHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHHHH-HHHHcCCeEEEEeCeeccc
Confidence 45667888888888 864478899999999999999853 3456788888888776544 4444565544433210111
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 232 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g 232 (411)
. + ..... |++++ +. .+++++++++ .+++|.+.+ +++|.++|++||+++|+||+|++. ..+
T Consensus 131 ~----~-~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T----N-HYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T----S-SEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c----C-cCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 0 00111 34444 22 2456666666 444888888 999999999999999999999853 222
Q ss_pred c-CccccccCCCcchh--hhhhhccCCcccccccccHHHHH--HhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcC--C
Q 015230 233 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--G 305 (411)
Q Consensus 233 ~-~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~--~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~--~ 305 (411)
. ......+ .+|++ |++|+++++.++|++++++++++ .+... .....+.+.+...+++..++++.++.. +
T Consensus 192 ~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~--~~~~~~~s~~~~~~aal~~a~~~l~~~g~~ 267 (446)
T 2x3l_A 192 GFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEY--LSYFQTSSPSYLIMASLESAAQFYKTYDST 267 (446)
T ss_dssp TSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHH--HHHHSCSSCCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHH--HHHHcCCCchHHHHHHHHHHHHHHHHhCHH
Confidence 2 1222222 34554 67898887667899988766543 22210 011224445666666655666666542 2
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCc
Q 015230 306 -TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 384 (411)
Q Consensus 306 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~ 384 (411)
+.++.+++.+++++. ++.......+..+++.+.. ....++.+.|.++||.+...+.+
T Consensus 268 ~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~~--------------~~~~~l~~~L~~~GI~v~~~g~~ 325 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYEG--------------FTGHDIQNWFMNAHIYLELADDY 325 (446)
T ss_dssp HHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECTT--------------SCHHHHHHHHHHTTEEESEECSS
T ss_pred HHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeCC--------------cCHHHHHHHHHHCCCEEEecCCC
Confidence 555555555555554 2221111223456666531 11367889999999999834445
Q ss_pred ceeeec--CCCHHHHHHHHHHHHHHHHh
Q 015230 385 AGFTSL--AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 385 ~~~~~~--~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+|+.+ ..|++++ +++++|++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 677754 4589999 999999988754
No 217
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.81 E-value=1.7e-18 Score=168.06 Aligned_cols=321 Identities=12% Similarity=0.002 Sum_probs=195.6
Q ss_pred CcHHHHHHHHHHHHcCCC-C-CC--CCHHHHHHHHHHHhhCC-C--CC---EEEEeCChHHHHHHHHHHHHhc-c-----
Q 015230 53 ADDQVLAALGETMKKGTS-F-GA--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF-T----- 116 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-~-~~--~~~~~~~l~~~l~~~~~-~--~~---~v~~~~~g~~a~~~al~~~~~~-~----- 116 (411)
.+|.+.+++.+.+..... + .+ ..++++++.+++++.++ . .+ ..++|+||++|+..++..++.. .
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 688999999888776321 1 11 25566788899999987 3 33 3356999999999998765322 0
Q ss_pred -C----CcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc
Q 015230 117 -G----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 191 (411)
Q Consensus 117 -~----~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~ 191 (411)
+ +..|++..++|. .+..+....|.++..++.....+.. |+++++++++. ++++|+++.
T Consensus 148 ~G~~~~~~~vi~~~~~h~-s~~~~~~~~G~~~~~v~~~~~~~~~-------------d~~~l~~~i~~---~t~~v~~~~ 210 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANVQV-CWEKFARYFEVELKEVKLSEGYYVM-------------DPQQAVDMVDE---NTICVAAIL 210 (502)
T ss_dssp TTCCCSCCEEEEETTCCH-HHHHHHHHTTCEEEEECCBTTBCSC-------------CHHHHHHHCCT---TEEEEEEEB
T ss_pred cCCCCCCcEEEEcCCchH-HHHHHHHHcCceeEEEecCCCcCcC-------------CHHHHHHHHhh---CCEEEEEec
Confidence 1 126666655544 4455555566655554432211111 89999998873 567777777
Q ss_pred cCCCCCccCCCHHHHHHHHHHHHHh------CCEEEEecccccc-c--cccCccccccCCCcchh--hhhhhccCCcccc
Q 015230 192 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGVTPDLT--TLGKIIGGGLPVG 260 (411)
Q Consensus 192 ~~~~~G~~~~~~~~l~~i~~l~~~~------~~~li~De~~~g~-~--~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g 260 (411)
+++++|.+.+ +++|.++|++| |+++++|++|+++ . .......+..-...|.+ +..|++.++..+|
T Consensus 211 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G 286 (502)
T 3hbx_A 211 GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG 286 (502)
T ss_dssp SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeE
Confidence 7777898888 99999999999 9999999999865 2 11111111111134544 5678887767788
Q ss_pred ccccc-HHHH-HHhcCCCCccccc-------CCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhc
Q 015230 261 AYGGR-RDIM-EMVAPAGPMYQAG-------TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA 328 (411)
Q Consensus 261 ~~~~~-~~~~-~~~~~~~~~~~~~-------t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (411)
+++.+ ++.+ +.+. ....+.+. .++.+.....+..+++..+.. ++..++..++.+++.+.|+++
T Consensus 287 ~~~~~~~~~l~~~~~-~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---- 361 (502)
T 3hbx_A 287 WVIWRNKEDLPEELI-FHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT---- 361 (502)
T ss_dssp EEEESSGGGSCGGGC-EEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred EEEEeCHHHhhHHhc-cCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 87554 4443 2221 00111110 122222223333334443322 455677777777887777765
Q ss_pred CCceEEe--eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC-------cceee--ecCCCHHHH
Q 015230 329 GHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFT--SLAHSSDDI 397 (411)
Q Consensus 329 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------~~~~~--~~~~t~~~i 397 (411)
+...... ....++.|.+.+.. ......+.+.|.++|+++..... ..+|+ ...+|++++
T Consensus 362 ~~~~~~~~~~~~~~v~f~~~~~~-----------~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 362 ERFNIVSKDEGVPLVAFSLKDSS-----------CHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp TCEEECSCSSSSSEEEEEESSCS-----------SCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHH
T ss_pred CCEEEEeCCCCceEEEEEecCCC-----------cCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHH
Confidence 3222121 24557777774321 11225789999999998754321 23566 456799999
Q ss_pred HHHHHHHHHHHHh
Q 015230 398 QHTITAAEKVLRQ 410 (411)
Q Consensus 398 ~~~i~~l~~~~~~ 410 (411)
+.+++.|++++++
T Consensus 431 d~li~~L~~~l~~ 443 (502)
T 3hbx_A 431 ERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 218
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.80 E-value=9.3e-18 Score=161.66 Aligned_cols=301 Identities=10% Similarity=-0.000 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHhhCCCC----------CEEEEeCChHHHHHHHHHHHHhcc-------C---------CcEEEEEeCCc
Q 015230 75 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 128 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~----------~~v~~~~~g~~a~~~al~~~~~~~-------~---------~~~vi~~~~~~ 128 (411)
.++++++.+|+++.++-+ ...+||+|||+|+..++..++... + ++.+|+.+...
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 567888999999998733 268999999999999998775321 1 12344445555
Q ss_pred CCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcC---CCcEEEEEEcccCCCCCccCCCHHH
Q 015230 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 205 (411)
Q Consensus 129 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~vi~~~~~~~~G~~~~~~~~ 205 (411)
|.....+....|..+..++.... ++ |+++|++++++. ...+.++++...++++|.+.+
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~-~~--------------d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---- 252 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENH-RM--------------RGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---- 252 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTT-BC--------------CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHHcCCceEEEECCCC-Cc--------------CHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----
Confidence 54555555566766666554322 22 999999999753 123666777777777899888
Q ss_pred HHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCccccccccc-HHHH-HHhcCCCCcc
Q 015230 206 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGGR-RDIM-EMVAPAGPMY 279 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~~-~~~~-~~~~~~~~~~ 279 (411)
+++|.++|++||+++++|++|.+. ...........++ ..|.+ +.+|++++...+|+++.+ +..+ +.+.....++
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl 332 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL 332 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCcccc
Confidence 999999999999999999999754 2221111111122 23544 578999864446776554 3332 2221100110
Q ss_pred ccc-----------CC-C---CCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEE
Q 015230 280 QAG-----------TL-S---GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGF 343 (411)
Q Consensus 280 ~~~-----------t~-~---~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~ 343 (411)
... +. . ...+.+.+++..+..-.-++++++..++.+++.+.|+++ +.... ......+++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~iv~f 408 (475)
T 3k40_A 333 KHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMGLVCF 408 (475)
T ss_dssp ----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTTEEEE
T ss_pred CCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEE
Confidence 000 00 0 123333333333321111566777888888888888775 22211 1233556677
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe-ccC---CCcceeeec---CCCHHHHHHHHHHHHHHHHh
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTSL---AHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-~~~---~~~~~~~~~---~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.. ......++.+.|.++|.++ .+. +...+|+++ .+|+++|++++++|++++++
T Consensus 409 ~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 409 RLKG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6632 2334578889999887654 322 233467753 46899999999999998765
No 219
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.80 E-value=2.3e-18 Score=163.17 Aligned_cols=289 Identities=13% Similarity=0.052 Sum_probs=174.6
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEE--EeCChHHHHHHHHHHHHhccCCcEEEEE
Q 015230 53 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERIIKF 124 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~--~~~~g~~a~~~al~~~~~~~~~~~vi~~ 124 (411)
+++++++++.+.... ...+.|....++++.+++++.++...... +++||++|+..+++. ...+++.|++.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~a--l~~~Gd~Vl~~ 113 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFG--ILRPGDELLYI 113 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHT--TCCTTCEEEEC
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHH--hCCCCCEEEEe
Confidence 466777777664221 12355667888999999999996322222 144899999999873 23456778887
Q ss_pred eCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-----CCHHHHHHHHHcCCCcEEEEEEcc-cCCCCCc
Q 015230 125 EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP-VVGNSGF 198 (411)
Q Consensus 125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~~~~~vi~~~-~~~~~G~ 198 (411)
++..|+.+.....++|. ........+..+..++. .|+++++++++ +++++|++++ .++.+|.
T Consensus 114 ~~~~y~~~~~~~~l~g~---------~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~ 181 (431)
T 3ht4_A 114 TGKPYDTLEEIVGVRGK---------GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRP 181 (431)
T ss_dssp SSSCCTTHHHHTTSSSC---------SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSC
T ss_pred CCCCchhHHHHHhhccc---------ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCC
Confidence 73444444433332221 00011111223333333 28999999886 4688888885 4433443
Q ss_pred cCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC--cccccccccHHHHHHhc
Q 015230 199 IAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMVA 273 (411)
Q Consensus 199 ~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G--~~~g~~~~~~~~~~~~~ 273 (411)
..+.+.+++|.++|++ ||+++|+||+|+.+ ...... .++.+..+.|++|+++|| .+.|++++++++++.+.
T Consensus 182 -~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 182 -SFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 3344449999999999 99999999999865 332221 224445566899999874 56788899999888775
Q ss_pred CCC-CcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhc-CCceEEeeecceEEEEEecCCCC
Q 015230 274 PAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPVY 351 (411)
Q Consensus 274 ~~~-~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~ 351 (411)
... ....+.+.+.+...+.++.+.++.+ +..+++..++..++.+.|+++..+. |. ...++.+.++.+.+
T Consensus 258 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l------ 328 (431)
T 3ht4_A 258 YRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQF------ 328 (431)
T ss_dssp HHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEEC------
T ss_pred HHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEe------
Confidence 310 1111112222222233344444433 4456778889999999998874321 11 11123345677766
Q ss_pred CcchhcccchHHHHHHHHHHHHcC
Q 015230 352 NFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
++.+.+.++++.|.+..
T Consensus 329 -------~~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 329 -------DDKDRMIAFCQAIQYAS 345 (431)
T ss_dssp -------CCHHHHHHHHHHHHHTS
T ss_pred -------CCHHHHHHHHHHHHhcC
Confidence 33456678999998873
No 220
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.80 E-value=2.3e-19 Score=170.70 Aligned_cols=318 Identities=10% Similarity=-0.044 Sum_probs=191.1
Q ss_pred CCEEEeccCCccccccCCCcHHHHHHHHHHHHc-CC-C--CC----C---CCHHHHHHHHHHHhhCC---CCCEEEEeCC
Q 015230 35 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-GT-S--FG----A---PCLLENVLAEMVISAVP---SIEMVRFVNS 100 (411)
Q Consensus 35 g~~~~d~~~~~~~~~~g~~~~~v~~a~~~~l~~-~~-~--~~----~---~~~~~~~l~~~l~~~~~---~~~~v~~~~~ 100 (411)
.+.++||..+. ..+. .++.+++++.+++.. +. . |. + ..++++.+++++.+..+ .+++|++|+|
T Consensus 55 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G 131 (427)
T 2hox_A 55 QGCSADVASGD--GLFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG 131 (427)
T ss_dssp TTCCEECCSCC--CGGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred CCceEEecCcC--CCCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence 34567877763 2222 456677777777632 21 1 32 2 45677888888876543 4789999999
Q ss_pred hHHHHHHHHHHHHh------ccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHH
Q 015230 101 GTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 174 (411)
Q Consensus 101 g~~a~~~al~~~~~------~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 174 (411)
+++++..++..... ..+++.|++.++.|.+.. ......|..+.. ... |+++++
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~-~~~~~~g~~~~~-----------------~~~---d~~~l~ 190 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR-EQTKYFDKKGYV-----------------WAG---NAANYV 190 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH-HHHHHSCBTTEE-----------------EEE---EGGGGT
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHH-HHHHHcCCeeee-----------------ecC---CHHHHH
Confidence 99999999975310 345678888888886533 333333332110 111 566666
Q ss_pred HHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc
Q 015230 175 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG 254 (411)
Q Consensus 175 ~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~ 254 (411)
+.++. ++++++++..+|++|.+.+ +.+ + ++..+.|+++.+ ......... .+...-+.||||.++
T Consensus 191 ~~~~~---~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~~~-~~~s~~~~~-~~~~i~~~S~SK~~g 254 (427)
T 2hox_A 191 NVSNP---EQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVYYW-PHYTPIKYK-ADEDILLFTMSKFTG 254 (427)
T ss_dssp TCSCG---GGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTTCS-TTTSCCCSC-BCCSEEEEEHHHHTS
T ss_pred HhhcC---CceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecccC-CCCCccccC-CCceEEEEeChhcCC
Confidence 65542 4455555444555666555 212 2 556777877642 000111111 223333569999998
Q ss_pred -CCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHh---------cCC----hHHHHHHHHHHHHH
Q 015230 255 -GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPG----TYEYLNKITGELTQ 319 (411)
Q Consensus 255 -~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~---------~~~----~~~~~~~~~~~~~~ 319 (411)
.|+|+||+++ ++++++.+.. .....+++.+.+++.++.++++... .++ .+++++++.+++.+
T Consensus 255 ~~G~RiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (427)
T 2hox_A 255 HSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITA 331 (427)
T ss_dssp CGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7999999988 5888888763 2222345678888888877776431 133 33455555555555
Q ss_pred HHHHH-HHhc-----C-----CceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHH-HHcCeEeccCC-----
Q 015230 320 GIIDA-GKKA-----G-----HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ----- 382 (411)
Q Consensus 320 ~l~~~-~~~~-----~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~----- 382 (411)
.|+++ .... + ........|+++|+++... ..++.+.+ .++||.+.++.
T Consensus 332 ~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gI~v~pg~~f~~~ 396 (427)
T 2hox_A 332 LLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---------------EDKDCYQTFQNGRINTQNGVGFEAS 396 (427)
T ss_dssp HHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---------------GGCSHHHHHHHTTEECEEGGGGTSC
T ss_pred HHHhCcCccccccccccccccccccCCCCceEEEEECCCc---------------HHHHHHHHHHHCCEEEcCCCccCCC
Confidence 55443 0000 0 0112233488899988431 13455555 57899999873
Q ss_pred CcceeeecCCCHHHHHHHHHHHHHHHHh
Q 015230 383 FEAGFTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 383 ~~~~~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
.+.+|+++..+++++++++++|.+++++
T Consensus 397 ~~~~Ris~~~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 397 SRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp TTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 3458999888999999999999998753
No 221
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.79 E-value=4.9e-17 Score=157.56 Aligned_cols=319 Identities=11% Similarity=-0.044 Sum_probs=188.0
Q ss_pred HHHHHHHHHHcCC-CCC-C--CCHHHHHHHHHHHhhCC-CC---------CEEEEeCChHHHHHHHHHHHHhc--c----
Q 015230 57 VLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVP-SI---------EMVRFVNSGTEACMGVLRLARAF--T---- 116 (411)
Q Consensus 57 v~~a~~~~l~~~~-~~~-~--~~~~~~~l~~~l~~~~~-~~---------~~v~~~~~g~~a~~~al~~~~~~--~---- 116 (411)
+.+++..++.... .+. + ..++++++++++++.++ .. ..+++|+|||+|+..++..++.. .
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5555666654421 111 1 25667788999999987 32 46899999999999999766432 1
Q ss_pred --C--------CcE-EEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCC---C
Q 015230 117 --G--------RER-IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---G 182 (411)
Q Consensus 117 --~--------~~~-vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~---~ 182 (411)
+ ++. |++.+.+|+ ....+....|.++..++... .+.. |+++|++++++.. .
T Consensus 170 ~~gd~~~~~~~~~~~v~~s~~~h~-s~~~~~~~~G~~v~~v~~d~-~~~~-------------d~~~L~~~i~~~~~~g~ 234 (486)
T 1js3_A 170 ASPGLTQGAVLEKLVAYASDQAHS-SVERAGLIGGVKLKAIPSDG-KFAM-------------RASALQEALERDKAAGL 234 (486)
T ss_dssp HSTTCCHHHHHHHEEEEEETTCCH-HHHHHHHHHTCEEEEECCCT-TSCC-------------CHHHHHHHHHHHHHTTC
T ss_pred cCccchhcccCCCEEEEECCCCcH-HHHHHHHhCCCceEEeecCC-CCCC-------------CHHHHHHHHHHHHhCCC
Confidence 1 122 445555554 44555555666665554421 1111 8999999997521 1
Q ss_pred cEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCC-Ccchh--hhhhhccCCcc
Q 015230 183 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLP 258 (411)
Q Consensus 183 ~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~ 258 (411)
.+.+|++...++++|.+.+ +++|.++|++||+++++|++|+++ .....+.....++ ..|.+ +.+|++++.++
T Consensus 235 ~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~ 310 (486)
T 1js3_A 235 IPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (486)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc
Confidence 2346666666677888877 999999999999999999999864 2221111001121 23443 57899986677
Q ss_pred cccccccH-HH-HHHhcCCCCcccc-----------------cCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 015230 259 VGAYGGRR-DI-MEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319 (411)
Q Consensus 259 ~g~~~~~~-~~-~~~~~~~~~~~~~-----------------~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (411)
+|+++.++ .. .+.+......... .+.....+++.+++..+..-.-+++.++..++.+++.+
T Consensus 311 ~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 390 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (486)
T ss_dssp CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99987754 33 4444211111100 01112344444444433211115566777778888888
Q ss_pred HHHHHHHhcCCceEE-eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----CCcceeeec---C
Q 015230 320 GIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTSL---A 391 (411)
Q Consensus 320 ~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~~~~~~~~~---~ 391 (411)
.|+++ +..... ...+.++.|.+.. ......++.+.|.++|+++... +...+|+++ .
T Consensus 391 ~L~~~----~~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 391 FVLQD----PRFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHC----TTEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHhcC----CCeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 88764 222111 1234555665521 1122367888898888654332 223567753 3
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 015230 392 HSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~~~ 410 (411)
+|++++++++++|++++++
T Consensus 455 ~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5899999999999988764
No 222
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.79 E-value=2.2e-18 Score=162.80 Aligned_cols=217 Identities=10% Similarity=-0.002 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
.....+++.+.+++..+ .+++++++||++|+..+++.. ..+++.||+..+.|++.........
T Consensus 80 ~~p~~~~le~~lA~l~g-~~~~i~~ssGt~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~l-------------- 142 (415)
T 2fq6_A 80 GTLTHFSLQQAMCELEG-GAGCVLFPCGAAAVANSILAF--IEQGDHVLMTNTAYEPSQDFCSKIL-------------- 142 (415)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CCchHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHH--------------
Confidence 46677888888888875 456777899999999998732 3456789999888886433221100
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccccc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFRL 231 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~~~ 231 (411)
...+.++..++.+|+++++++++ +++++|+++.++|++|.+.+ +++|.++|++ ||+++|+|++|+....
T Consensus 143 --~~~G~~v~~v~~~d~~~le~ai~---~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~~ 213 (415)
T 2fq6_A 143 --SKLGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGVL 213 (415)
T ss_dssp --GGGTCEEEEECTTCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTTS
T ss_pred --HHcCcEEEEECCCCHHHHHHhhc---cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCccccc
Confidence 00122445556668888888876 36889999999999999998 9999999999 9999999999972211
Q ss_pred ccCccccccCCCcchhhhhhhccC-Ccc-cccccccHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015230 232 AYGGAQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309 (411)
Q Consensus 232 g~~~~~~~~~~~~d~~~~sK~~~~-G~~-~g~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~ 309 (411)
... . .++.+.-+.|++|.+++ |.+ .|++++++++++.+.... .......++..++.+...++.+ +...++
T Consensus 214 ~~p--~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~---~~~G~~~~~~~a~~~~~~l~~l--~~r~~~ 285 (415)
T 2fq6_A 214 FKA--L-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA---YLMGQMVDADTAYITSRGLRTL--GVRLRQ 285 (415)
T ss_dssp SCG--G-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH---HHTTCCCCHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCc--c-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH---HhcCCCCCHHHHHHHHhhhhHH--HHHHHH
Confidence 111 1 12332223489999995 544 688888877777665211 1112234566555555555544 233455
Q ss_pred HHHHHHHHHHHHHHH
Q 015230 310 LNKITGELTQGIIDA 324 (411)
Q Consensus 310 ~~~~~~~~~~~l~~~ 324 (411)
..++...+.+.|++.
T Consensus 286 ~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 286 HHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 566667777776654
No 223
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.78 E-value=2.3e-17 Score=155.01 Aligned_cols=276 Identities=15% Similarity=0.112 Sum_probs=171.9
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEE---eCChHHHHHHHHHHHHhccCCcEEEE
Q 015230 53 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 123 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~---~~~g~~a~~~al~~~~~~~~~~~vi~ 123 (411)
++.++++++.++... ...+.|...-++++.+.+++.++ .+..++ ++||++|+..++... ..+++.|++
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g-~e~alv~p~~~sGt~Ai~~al~al--l~~GD~Vl~ 106 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFK-TEAALVRPQIISGTHAISTVLFGI--LRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHT-CSEEEEETTSCSHHHHHHHHHHHH--CCTTCEEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhC-CCcEEEECCCccHHHHHHHHHHHh--cCCCCEEEE
Confidence 456778888775421 12355666667888888888885 445555 889999999988743 455677888
Q ss_pred Ee-CCcCCCchh---------hhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcc--
Q 015230 124 FE-GCYHGHADP---------FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-- 191 (411)
Q Consensus 124 ~~-~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~-- 191 (411)
.+ +.|.+.... .+...|..+..++... .+. .|+++++++++ +++++|++++
T Consensus 107 ~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~-~g~-------------~d~e~l~~ai~---~~tklV~i~~s~ 169 (409)
T 3jzl_A 107 ITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE-NGD-------------VDFPRIAKKMT---PKTKMIGIQRSR 169 (409)
T ss_dssp CSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT-TSC-------------CCHHHHHHHCC---TTEEEEEEECSC
T ss_pred eCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC-CCC-------------cCHHHHHHhcc---CCCeEEEEECCC
Confidence 77 666543221 1111222222221111 110 28999998886 4688999998
Q ss_pred --cCCCCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC-cc-cccccc
Q 015230 192 --VVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LP-VGAYGG 264 (411)
Q Consensus 192 --~~~~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G-~~-~g~~~~ 264 (411)
++|++|.+.+ +++|.++|++ ||+++++||+|+.+ ...... .++.+.-+.|++|.++++ .+ .|++++
T Consensus 170 g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~---~~g~Div~~S~sK~lgg~~~~~GG~v~~ 242 (409)
T 3jzl_A 170 GYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPP---EVGADIIAGSLIKNPGGGLAKTGGYIAG 242 (409)
T ss_dssp TTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSG---GGTCSEEEEETTSGGGTTTCSSCEEEEE
T ss_pred CCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCcc---ccCCeEEEECccccCCccCCceEEEEEe
Confidence 8888888877 9999999999 99999999999743 111111 123333345899999964 34 688899
Q ss_pred cHHHHHHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEE----eeec
Q 015230 265 RRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG----GYIS 338 (411)
Q Consensus 265 ~~~~~~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~g 338 (411)
++++++.+.. ..+.. +...+.....+.++...++.+ +..+++..++..++.+.|+++ +....+ .+..
T Consensus 243 ~~~li~~l~~~~~~~~~-g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~v~p~~~~~~~~ 315 (409)
T 3jzl_A 243 KEALVDLCGYRLTTPGI-GREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEF----GVEADPVWDAPRTD 315 (409)
T ss_dssp CHHHHHHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSS
T ss_pred CHHHHHHHHHHhccccc-cccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCCcc
Confidence 9999888763 11111 112222221123334444332 456677888888898888876 322111 1112
Q ss_pred ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 339 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
.++.+.+ ++.+.+.++++.|++..
T Consensus 316 ~i~~i~l-------------~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 316 LIQSVSF-------------HNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp SCCEEEC-------------SCHHHHHHHHHHHHHTS
T ss_pred EEEEEEe-------------CCHHHHHHHHHHHHhcC
Confidence 2566655 34566788999999874
No 224
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.77 E-value=4.7e-18 Score=160.51 Aligned_cols=302 Identities=8% Similarity=-0.078 Sum_probs=183.2
Q ss_pred CcHHHHHHHHHHHHcCCC--CCCC--CHHHHHHHHHHHhhCC-C-CCEEEE-eCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGTS--FGAP--CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~--~~~~--~~~~~~l~~~l~~~~~-~-~~~v~~-~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.+|++++++.+....... ..++ .+..+++.+++++.++ . .+++++ |+||++|+..+++.+ .+++ +++..
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l---~~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL---IDKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT---CSSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh---cCCC-eEEEe
Confidence 678888888763111111 1122 2346789999999997 3 368998 999999999999853 2334 23335
Q ss_pred CCcCCCchh-hhhhc--CCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCC
Q 015230 126 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 202 (411)
Q Consensus 126 ~~~~~~~~~-~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~ 202 (411)
.++|+.... ..... |..+..++.+ .+... +.+ + .+++++|++..++|++|.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~------------~~~-----i---~~~~~~v~~~~~~nptG~~~~- 183 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSAP------------EPQ-----T---DPSVDVIAWAHNETSTGVAVA- 183 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCC------------CCC-----C---CTTCSEEEEESEETTTTEECC-
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCCC------------Ccc-----c---cCCCCEEEEeCcCCCcceecc-
Confidence 555532111 11222 3333333222 11110 110 1 235677777777788888888
Q ss_pred HHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcCC----
Q 015230 203 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA---- 275 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~~---- 275 (411)
+++|.++ ||+++|+||+|+.+ .. .... + +|++ +++|+++++.++|++++++++++.+...
T Consensus 184 ---~~~i~~~---~~~~vivD~a~~~~~~~---~~~~--~--~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 184 ---VRRPEGS---DDALVVIDATSGAGGLP---VDIA--E--TDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp ---CCCCTTC---C-CEEEEECTTTTTTSC---CCGG--G--CSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTT
T ss_pred ---hHHhhhh---cCCeEEEEeccccCCcc---cCcc--c--CcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccC
Confidence 5555555 89999999999743 21 1111 2 4544 7889998543589999999888766310
Q ss_pred ---CCcc-----------cccCCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceEE---
Q 015230 276 ---GPMY-----------QAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICG--- 334 (411)
Q Consensus 276 ---~~~~-----------~~~t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--- 334 (411)
...+ .....+.+..+++++.++++.+.+ ++++++.+++.+++.+.|+++ +.....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~ 326 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPFVTD 326 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEESCCS
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceeccCC
Confidence 0000 011235566777777777775543 345666777777777777664 211111
Q ss_pred e--eecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC----CcceeeecC--CCHHHHHHHHHHHHH
Q 015230 335 G--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEK 406 (411)
Q Consensus 335 ~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~~~~~~~--~t~~~i~~~i~~l~~ 406 (411)
. ..+.++++.+.. ..+..++.+.|.++||.+.++. ...+|+++. +|++++++++++|++
T Consensus 327 ~~~~~~~~~~~~~~~-------------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 327 PGLRSQVVGTIDFVD-------------DVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp GGGBCSSEEEEEECT-------------TSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hhhcCCcEEEEECCC-------------CCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 1 123488887732 1123678999999999998752 245888654 699999999999999
Q ss_pred HHHhC
Q 015230 407 VLRQI 411 (411)
Q Consensus 407 ~~~~~ 411 (411)
+++++
T Consensus 394 ~l~~~ 398 (398)
T 2fyf_A 394 VVERL 398 (398)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 98764
No 225
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.75 E-value=5.5e-17 Score=152.96 Aligned_cols=282 Identities=16% Similarity=0.113 Sum_probs=171.1
Q ss_pred CcHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEE---eCChHHHHHHHHHHHHhccCCcEEEE
Q 015230 53 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 123 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~---~~~g~~a~~~al~~~~~~~~~~~vi~ 123 (411)
+++++++++.+.... ...+.|...-.+++.+.+++.++ .+..++ ++||++|+..++.. ...+++.|++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g-~e~alv~p~~~sGt~A~~~al~a--ll~pGD~Vl~ 121 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFN-TESAFVRPHFVNGTHAIGAALFG--NLRPNDTMMS 121 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT-CSEEEEETTCCSHHHHHHHHHHH--TCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhC-CCceEEeCCCCcHHHHHHHHHHH--hcCCCCEEEE
Confidence 456777777665332 12355666667888888888885 444555 88999999988874 2456778888
Q ss_pred Ee-CCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC----CCHHHHHHHHHcCCCcEEEEEEcc----cCC
Q 015230 124 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVG 194 (411)
Q Consensus 124 ~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~l~~~~~~~~~~~~~vi~~~----~~~ 194 (411)
.+ +.|++..... .+.... ........+..+..++. .|+++++++++++ +++++|++++ +++
T Consensus 122 ~~~~~y~~~~~~~---g~~~~~------~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 122 ICGMPYDTLHDII---GMDDSK------KVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CSSSCCGGGHHHH---TCCTTC------CSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred eCCCCchhHHHHh---ccccch------hhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 87 6776532111 000000 00000111222333333 3899999999852 3688999998 677
Q ss_pred CCCccCCCHHHHHHHHHHHHH--hCCEEEEecccccc-ccccCccccccCCCcchhhhhhhccCC--cccccccccHHHH
Q 015230 195 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIM 269 (411)
Q Consensus 195 ~~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~-~~g~~~~~~~~~~~~d~~~~sK~~~~G--~~~g~~~~~~~~~ 269 (411)
++|.+.+ +++|.++|++ ||+++++|++|+.+ ...... .++.+.-+.|+||.++|+ .+.|+++++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li 264 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVGADIIAGSLIKNIGGGIATTGGYIAGKEEYV 264 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccCCeEEEECCcccccccccceEEEEEECHHHH
Confidence 7787766 9999999999 89999999999743 111111 123333345899999964 3467888999998
Q ss_pred HHhcC--CCCcccccCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEe----eecceEEE
Q 015230 270 EMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGF 343 (411)
Q Consensus 270 ~~~~~--~~~~~~~~t~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~~ 343 (411)
+.++. ..+.. +.+.+.+...+..+...++.+ +..+++..++..++.+.|+++ +....+. +..+++.+
T Consensus 265 ~~l~~~~~~~~~-g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V~p~~~~~~~~li~~~ 337 (427)
T 3hvy_A 265 TQATFRVTVPGI-GGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELA----GFDVLPKYNDKRTDIIQAI 337 (427)
T ss_dssp HHHHHHHSCTTT-GGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEESCTTSCCSSSEEEE
T ss_pred HHHHHHhhcCCc-ccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhC----CCeecCCCCCCCceEEEEE
Confidence 88763 11111 112222122133333444332 456677888888888888876 3321111 11226666
Q ss_pred EEecCCCCCcchhcccchHHHHHHHHHHHHc
Q 015230 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374 (411)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 374 (411)
.+ .+.+.+.++++.|...
T Consensus 338 ~l-------------~~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 338 KF-------------NDEKKLIDFIKGIQTA 355 (427)
T ss_dssp EC-------------SSHHHHHHHHHHHHHT
T ss_pred eC-------------CCHHHHHHHHHHhccc
Confidence 65 3345667888888876
No 226
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.75 E-value=9.2e-17 Score=151.44 Aligned_cols=281 Identities=15% Similarity=0.118 Sum_probs=170.0
Q ss_pred cHHHHHHHHHHHHc------CCCCCCCCHHHHHHHHHHHhhCCCCCEEEE--eCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 54 DDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF--VNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 54 ~~~v~~a~~~~l~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~--~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.+++++++.++.-. ...+.|...-..++.+.+++.++....+++ ++||++|+..++... ..+++.|++.+
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al--l~pGD~Vl~~~ 122 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN--LRPGNTMLSVC 122 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHH--CCTTCEEEESS
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHH--hCCCCEEEEeC
Confidence 45677777654211 123556666678888888888854333443 889999999888742 45667888877
Q ss_pred -CCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCC-----CCHHHHHHHHHcCCCcEEEEEEcc----cCCC
Q 015230 126 -GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVGN 195 (411)
Q Consensus 126 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~~~~~vi~~~----~~~~ 195 (411)
+.|++..... ...+.. ........+..+..++. .|+++++++++++ +++++|++++ ++|+
T Consensus 123 ~~~y~~~~~~~-g~~~~~--------~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~np 192 (427)
T 3i16_A 123 GEPYDTLHDVI-GITENS--------NMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRR 192 (427)
T ss_dssp SSCCGGGHHHH-TCSCCC--------SSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSC
T ss_pred CCccHHHHHHH-hccccc--------hHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCC
Confidence 6666533111 000000 00000001112222222 2899999999842 3688999988 7777
Q ss_pred CCccCCCHHHHHHHHHHHHH--hCCEEEEeccccccc-cccCccccccCCCcchhhhhhhccC-C-cccccccccHHHHH
Q 015230 196 SGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR-LAYGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME 270 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~--~~~~li~De~~~g~~-~g~~~~~~~~~~~~d~~~~sK~~~~-G-~~~g~~~~~~~~~~ 270 (411)
+|.+.+ +++|.++|++ ||+++++|++|+.+. ..... .++.+.-+.|++|.+++ | .+.|++++++++++
T Consensus 193 tg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~ 265 (427)
T 3i16_A 193 ALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIE 265 (427)
T ss_dssp CCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHH
T ss_pred cccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccCCeEEEecCcccCCCCCCceEEEEEECHHHHH
Confidence 888776 9999999999 999999999997431 11111 12333334589999996 4 45788899999998
Q ss_pred HhcC--CCCcccccCCCCCHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCceEEeeecc-----eEE
Q 015230 271 MVAP--AGPMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG-----MFG 342 (411)
Q Consensus 271 ~~~~--~~~~~~~~t~~~~~~~-~a~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~-----~~~ 342 (411)
.+.. ..... +.... +.+. +..+...++.+ +..+++..+++.++.+.|+++ +.... ++... ++.
T Consensus 266 ~l~~~~~~~~~-g~~~~-~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~----g~~V~-p~~~~~~~~~i~~ 336 (427)
T 3i16_A 266 KTSYRLTVPGI-GGECG-STFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELA----GFEVM-PKYDEKRSDIIQS 336 (427)
T ss_dssp HHHHHHSCTTT-GGGCC-CCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHT----TCEEE-SCTTSCCSSSCEE
T ss_pred HHHHhcccCcc-CccCC-ccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC----CCeec-CCCCCCCccEEEE
Confidence 8763 11111 11111 1122 23333333322 456678888888888888876 33211 11222 666
Q ss_pred EEEecCCCCCcchhcccchHHHHHHHHHHHHcC
Q 015230 343 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375 (411)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 375 (411)
+.+ .+.+.+.++++.|+...
T Consensus 337 i~l-------------~~~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 337 IKF-------------NDKDKLIEFCKGIQTGS 356 (427)
T ss_dssp EEC-------------SSHHHHHHHHHHHHHTC
T ss_pred EEE-------------CCHHHHHHHHHHHhhcC
Confidence 666 34456788999998873
No 227
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.70 E-value=1.6e-16 Score=151.90 Aligned_cols=310 Identities=16% Similarity=0.148 Sum_probs=172.7
Q ss_pred cccCCCcHHHHHHHH---HHHHcCCCCC-----CCCHHHHHHHHHHHhhCC-CCCEEEEeCChHHHHHHHHHHHHhccCC
Q 015230 48 AIIGHADDQVLAALG---ETMKKGTSFG-----APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 48 ~~~g~~~~~v~~a~~---~~l~~~~~~~-----~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~~a~~~al~~~~~~~~~ 118 (411)
...++..|++++++. +.......+. +..+...++.+++++.++ ..+++++++|++.++++++... ...++
T Consensus 72 g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~-~~~~g 150 (438)
T 1wyu_A 72 GVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL-RETGR 150 (438)
T ss_dssp SCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH-HHHTC
T ss_pred CccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH-hcCCC
Confidence 455564555555554 2223322211 123556788888888887 5556789999995555554332 33567
Q ss_pred cEEEEEeCCcCCCchhhhh---hcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCC
Q 015230 119 ERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~ 195 (411)
++|++..+.|+........ ..|..+..++.. .+.. |+++ ++ +++++|+++.+ ++
T Consensus 151 d~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~--~~~~-------------d~~~----i~---~~t~~v~i~~p-n~ 207 (438)
T 1wyu_A 151 MGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE--GGRT-------------PLPE----VG---EEVGAVVVQNP-NF 207 (438)
T ss_dssp CEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB--TTBC-------------CCCC----CC---TTEEEEEEESS-CT
T ss_pred CEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc--CCcc-------------CHHH----hC---CCeEEEEEECC-CC
Confidence 8888877777654333221 235444443321 1110 2222 22 35777777776 77
Q ss_pred CCccCCCHHHHHHHHHHHHHhCCEEEEecc-cc-ccccccCccccccCCCcchhhh-hhhcc-----CCcccccccccHH
Q 015230 196 SGFIAPKPDFLNAIRRITKENGALLIFDEV-MT-GFRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRD 267 (411)
Q Consensus 196 ~G~~~~~~~~l~~i~~l~~~~~~~li~De~-~~-g~~~g~~~~~~~~~~~~d~~~~-sK~~~-----~G~~~g~~~~~~~ 267 (411)
+|.+.+ +++|.++|++||+++|+|-. ++ |. .. ....+ ..|++++ +|.|+ +|.++|+++++++
T Consensus 208 tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g~-~~---~~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~ 277 (438)
T 1wyu_A 208 LGALED----LGPFAEAAHGAGALFVAVADPLSLGV-LK---PPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKA 277 (438)
T ss_dssp TSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGT-BC---CHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGG
T ss_pred CeEEec----HHHHHHHHHHcCCEEEEEechhhccC-cC---CCccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHH
Confidence 888887 99999999999999996522 32 22 00 00122 2455544 46542 3457899999888
Q ss_pred HHHHhcCCC----------C-------------cccccCCCC---CHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 015230 268 IMEMVAPAG----------P-------------MYQAGTLSG---NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELT 318 (411)
Q Consensus 268 ~~~~~~~~~----------~-------------~~~~~t~~~---~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~ 318 (411)
+++.+.... . .....+.+. +.++...+...+..+.. +++.++.+++.+++.
T Consensus 278 ~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~ 357 (438)
T 1wyu_A 278 FVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLH 357 (438)
T ss_dssp GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 776653210 0 000122222 22322222222433322 455666777777777
Q ss_pred HHHHHHHHhcCCceEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEe--ccCC---CcceeeecC--
Q 015230 319 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTSLA-- 391 (411)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v--~~~~---~~~~~~~~~-- 391 (411)
+.|+++ +..........+..+.+... .+..++.+.|.++||.+ .++. ...+|+++.
T Consensus 358 ~~L~~~----~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~ 420 (438)
T 1wyu_A 358 ALLLEV----PGVRPFTPKPFFNEFALALP-------------KDPEAVRRALAERGFHGATPVPREYGENLALFAATEL 420 (438)
T ss_dssp HHHTTS----TTCEECSCSSBCSEEEEECS-------------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTT
T ss_pred HHHhcC----CCeEECCCCCeEEEEEEeCC-------------CCHHHHHHHHHHCCceeccccccccCCCeEEEEeccc
Confidence 777654 21111111123333333211 12367899999999999 4443 346788654
Q ss_pred CCHHHHHHHHHHHHHHH
Q 015230 392 HSSDDIQHTITAAEKVL 408 (411)
Q Consensus 392 ~t~~~i~~~i~~l~~~~ 408 (411)
+|++++++++++|++++
T Consensus 421 ~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 421 HEEEDLLALREALKEVL 437 (438)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 79999999999998764
No 228
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=148.19 Aligned_cols=317 Identities=13% Similarity=0.014 Sum_probs=186.8
Q ss_pred ccCCCcHHHHHHHHHHHHcCCCC-------CCC----CHHHHHHHHHHHhhCC-C-CCEEEE-eCChHHHHHHHHHHHHh
Q 015230 49 IIGHADDQVLAALGETMKKGTSF-------GAP----CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARA 114 (411)
Q Consensus 49 ~~g~~~~~v~~a~~~~l~~~~~~-------~~~----~~~~~~l~~~l~~~~~-~-~~~v~~-~~~g~~a~~~al~~~~~ 114 (411)
..+..+++|.+++.+.+.+.... ... .+..++..+.+++.++ . .++|+| |.|||++++.++.....
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 34447899999999988752111 111 3345667777777776 3 357888 47999999999985432
Q ss_pred ccCCcEEEEEeCCcCCCchhhhhhcCCC--CcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEccc
Q 015230 115 FTGRERIIKFEGCYHGHADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192 (411)
Q Consensus 115 ~~~~~~vi~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~ 192 (411)
..+++++++...+.++.. ....+...+ +..++.+...+. ++++++..++ +++++|.+..+
T Consensus 100 ~~~Gd~v~~~~~g~~~~~-~~~~a~~~G~~~~~~~~~~~~~~--------------~~~~~~~~i~---~~t~lV~~~h~ 161 (377)
T 3e77_A 100 LKAGRCADYVVTGAWSAK-AAEEAKKFGTINIVHPKLGSYTK--------------IPDPSTWNLN---PDASYVYYCAN 161 (377)
T ss_dssp GSTTCEEEECCCSHHHHH-HHHHHTTTSEEEECSCCCSSSCS--------------CCCGGGCCCC---TTCSCEEEESE
T ss_pred CCCCCeEEEEECCHHHHH-HHHHHHHhCCceEEeccCCCcCC--------------CCChHHhccC---CCccEEEEeCc
Confidence 222567777666666531 111222222 222222111111 2233333332 45677777777
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHH
Q 015230 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEM 271 (411)
Q Consensus 193 ~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~ 271 (411)
.+.+|.+.| + +|+++|+++++|.+|+ .| ....++.++ ..+.+..|++++ --+|+++.++++++.
T Consensus 162 et~tG~~~p----i-----i~~~~~~~~~vD~~q~---~g~~~id~~~~~--~~~~s~~K~~gp-~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 162 ETVHGVEFD----F-----IPDVKGAVLVCDMSSN---FLSKPVDVSKFG--VIFAGAQKNVGS-AGVTVVIVRDDLLGF 226 (377)
T ss_dssp ETTTTEECS----S-----CCCCTTCCEEEECTTT---TTSSCCCGGGCS--EEEEEGGGTTSC-TTCEEEEEETTSCSC
T ss_pred cCchheEch----h-----hhccCCCEEEEEcccc---cCCCCCchhhcC--EEEEecccccCC-CccEEEEEcHHHHhh
Confidence 777899998 5 5889999999999997 22 222333333 244567799952 117778888777654
Q ss_pred hcCCCCccc--------cc-CCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceE---E-
Q 015230 272 VAPAGPMYQ--------AG-TLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAIC---G- 334 (411)
Q Consensus 272 ~~~~~~~~~--------~~-t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~- 334 (411)
+.+..+.+. .. ..+++.....+..++++.+.+ +++.++.+++.+++++.|+++. ++... .
T Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~~ 303 (377)
T 3e77_A 227 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEPQ 303 (377)
T ss_dssp CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCGG
T ss_pred ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCHH
Confidence 442211111 11 235566666666777876654 3455666666666666666541 12111 1
Q ss_pred eeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCC--Ccceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 335 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 335 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...+..+.|.+.+.+ ++.+....+.+.+.++||.+.++. ...+|++ ..+|++++|++++.|++++++
T Consensus 304 ~rs~~ivsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 304 NRSKMNIPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp GBCSSEEEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 112345777774321 111111457777889999998773 2347775 566999999999999998764
No 229
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.66 E-value=1.4e-15 Score=152.14 Aligned_cols=314 Identities=10% Similarity=-0.050 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+.....++.+.+++.++....+++++|+++|+.+++... ..+++.|++..+.|++.....+...|..+..++.... .
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al--~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~-~ 247 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN-P 247 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC-T
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc-c
Confidence 345678888888888864445667776679999988742 3456778887777765444324445554433221100 0
Q ss_pred CCCCCCCceeecCCCCHHHH-----HHHHHcC-CC---c----EEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEE
Q 015230 154 VPKGATYETLTAPFNDVSAL-----ENLFENN-KG---E----IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 220 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l-----~~~~~~~-~~---~----~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~l 220 (411)
+ + ....+ |++++ ++++++. ++ . ..+++++| + .+|.+.+ +++|.++|++||++|
T Consensus 248 ~----~-i~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n-~~G~v~d----l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 248 Y----G-FIGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-T-YDGTIYN----AHEVVKRIGHLCDYI 313 (730)
T ss_dssp T----C-CEEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-C-TTSEEEC----HHHHHHHHGGGBSEE
T ss_pred c----C-ccCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-C-CCCeecC----HHHHHHHHHHcCCeE
Confidence 0 0 00011 45555 8887753 11 1 23445555 3 4788888 999999999999999
Q ss_pred EEecccccc-cccc----Cccc--cccCCC----cchhhhhhhccCCcccc-cccccHHHH---------HHhcCCCCcc
Q 015230 221 IFDEVMTGF-RLAY----GGAQ--EYFGVT----PDLTTLGKIIGGGLPVG-AYGGRRDIM---------EMVAPAGPMY 279 (411)
Q Consensus 221 i~De~~~g~-~~g~----~~~~--~~~~~~----~d~~~~sK~~~~G~~~g-~~~~~~~~~---------~~~~~~~~~~ 279 (411)
++||+|++. ..+. ...+ +.++.+ .-+.|++|+++| ++.| ++..+++.+ ..+... ..
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~--~~ 390 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNNS--FN 390 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHHH--HH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHHH--HH
Confidence 999999632 2221 1112 122332 123489999763 3433 443322211 111100 00
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHH-HH-HhcCCceEE--------------------
Q 015230 280 QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-AG-KKAGHAICG-------------------- 334 (411)
Q Consensus 280 ~~~t~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~-------------------- 334 (411)
...+.+++...+++..++++.+.. ++..++..++.+++++.|++ +. .+.......
T Consensus 391 ~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 391 LFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 112344566666665566665443 45677888888888888877 21 000000000
Q ss_pred -----------e--eecc-e-----EEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee--ecCCC
Q 015230 335 -----------G--YISG-M-----FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHS 393 (411)
Q Consensus 335 -----------~--~~g~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~--~~~~t 393 (411)
. ..+. + +.+...+.+... ......+..+..+.+.|.++||.+...+...+++ +..+|
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~--g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t 548 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPET--GDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAET 548 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTT--TEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCC
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCccccc--ccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCC
Confidence 0 0010 0 222221000000 0000112235789999999999998876556655 57779
Q ss_pred HHHHHHHHHHHHHHHH
Q 015230 394 SDDIQHTITAAEKVLR 409 (411)
Q Consensus 394 ~~~i~~~i~~l~~~~~ 409 (411)
++++++++++|.++.+
T Consensus 549 ~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 549 PAKMNNLITQLLQLQR 564 (730)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 230
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.62 E-value=2.7e-15 Score=151.34 Aligned_cols=313 Identities=9% Similarity=-0.020 Sum_probs=180.5
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC-CC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 153 (411)
.....+..+.+++.++..+.+++++|+++|+..++... ..+++.|++..++|++.... +...|..+.+++.... .+
T Consensus 204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al--~~~GD~Vlv~~~~h~s~~~~-~~~~G~~~v~v~~~~~~~g 280 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKSIEQG-LMLTGAKPVYMVPSRNRYG 280 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HHHHCCEEEEECCCBCTTS
T ss_pred ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh--cCCCCEEEECCCchHHHHHH-HHHcCCEEEEEeCCCCccc
Confidence 44556677777777754455667777789999988753 34567888888877654444 4555665544332211 01
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHcCCCc-------E-EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecc
Q 015230 154 VPKGATYETLTAPFNDVSALENLFENNKGE-------I-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~-------~-~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
.. + ......-|+++++++++++++. + .+++++| +.+|.+.+ +++|.++|++|+++|++||+
T Consensus 281 ~~---g--~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDeA 349 (755)
T 2vyc_A 281 II---G--PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_dssp CB---C--CCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEECT
T ss_pred cc---c--ccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEECc
Confidence 00 0 0000001789999999764222 1 3555555 35788888 99999999999999999999
Q ss_pred cccc-ccccC----ccccccC--CCc------chhhhhhhccCCcc-cccccccHH---H-HHHhcCCCCcccccCCCCC
Q 015230 226 MTGF-RLAYG----GAQEYFG--VTP------DLTTLGKIIGGGLP-VGAYGGRRD---I-MEMVAPAGPMYQAGTLSGN 287 (411)
Q Consensus 226 ~~g~-~~g~~----~~~~~~~--~~~------d~~~~sK~~~~G~~-~g~~~~~~~---~-~~~~~~~~~~~~~~t~~~~ 287 (411)
|++. ..+.. ..+ .+ .+. -+.|++|+++| ++ .|++..+++ + ...+... .....+.+++
T Consensus 350 ~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~--~~~~~s~sp~ 424 (755)
T 2vyc_A 350 WYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQA--YMMHATTSPL 424 (755)
T ss_dssp TCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHH--HHHTSCSSCC
T ss_pred CchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHH--HHHhCCCCHH
Confidence 9743 22221 111 22 121 23478998763 44 455555432 1 1111110 0112234566
Q ss_pred HHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHh--------cC-C-ceEEee------------------
Q 015230 288 PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK--------AG-H-AICGGY------------------ 336 (411)
Q Consensus 288 ~~~~a~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--------~~-~-~~~~~~------------------ 336 (411)
.+..++..++++.+.. +++.++..++.+++++.|+++... +. + .....+
T Consensus 425 ~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (755)
T 2vyc_A 425 YAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504 (755)
T ss_dssp HHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhcc
Confidence 7777777777776654 467888999999999999887431 10 0 001100
Q ss_pred ---------------------ec------ceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCCcceee-
Q 015230 337 ---------------------IS------GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT- 388 (411)
Q Consensus 337 ---------------------~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~- 388 (411)
.| ..+.+........- .....+..+..+.+.|.++||.+...+...+++
T Consensus 505 ~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G---~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~ 581 (755)
T 2vyc_A 505 TVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDG---ELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFL 581 (755)
T ss_dssp HCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTS---SBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEE
T ss_pred chhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCC---CccccCCcHHHHHHHHHHCCCEEeecCCCeEEEE
Confidence 11 12222221100000 000012334688899989999987665556654
Q ss_pred -ecCCCHHHHHHHHHHHHHHHH
Q 015230 389 -SLAHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 389 -~~~~t~~~i~~~i~~l~~~~~ 409 (411)
+...|++++++++++|.++.+
T Consensus 582 ~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 582 FSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHH
Confidence 566799999999999987753
No 231
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.60 E-value=2.9e-14 Score=131.68 Aligned_cols=294 Identities=13% Similarity=0.046 Sum_probs=173.2
Q ss_pred HhhCC--CCCEEEEeCChHHHHHHHHHHHHhc--cCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCCCCCCCCCc
Q 015230 86 ISAVP--SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYE 161 (411)
Q Consensus 86 ~~~~~--~~~~v~~~~~g~~a~~~al~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (411)
.+..| .....++++|+|.++.+++.++... .+++.||+ +...|.....++.+.|..+.+++......
T Consensus 126 L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~~d~~-------- 196 (501)
T 3hl2_A 126 IKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENVLEGD-------- 196 (501)
T ss_dssp HHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEEEETT--------
T ss_pred HHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeeeeccc--------
Confidence 33445 4557888888887777666544222 13366666 66677777888888887665543211110
Q ss_pred eeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-ccccCccccc
Q 015230 162 TLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239 (411)
Q Consensus 162 ~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~-~~g~~~~~~~ 239 (411)
...+ |++++++++++++ +.+.+|+.++.+.-++...+ +++|+++|++||+++++||+|... .....+....
T Consensus 197 ~~~i---d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA 269 (501)
T 3hl2_A 197 ELRT---DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQG 269 (501)
T ss_dssp EEEE---CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHH
T ss_pred ccCC---CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHH
Confidence 1122 8999999999864 56677777665554555566 999999999999999999999643 2221111111
Q ss_pred cCCC-cchh--hhhhhccCCccccc-cc-c-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--CChHHHHH
Q 015230 240 FGVT-PDLT--TLGKIIGGGLPVGA-YG-G-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLN 311 (411)
Q Consensus 240 ~~~~-~d~~--~~sK~~~~G~~~g~-~~-~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~--~~~~~~~~ 311 (411)
+... .|++ |.-|.+-. |+|. ++ . ++++++.+... +.+ +.+..| +...-...++.-.+ +++.++..
T Consensus 270 ~~~GrAD~vVqS~HK~llv--pIGG~ii~~~d~e~l~~~~~~---yPG-r~S~Sp-sldl~~tLL~lGr~Gy~~ll~e~~ 342 (501)
T 3hl2_A 270 ARVGRIDAFVQSLDKNFMV--PVGGAIIAGFNDSFIQEISKM---YPG-RASASP-SLDVLITLLSLGSNGYKKLLKERK 342 (501)
T ss_dssp HHHSCCCEEEEEHHHHHCC--CSSCEEEEESCHHHHHHHHHT---SCS-CBCSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcEEEeccccccee--ecCceEEEeCCHHHHHHHHHh---CCC-CCCCcH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 5655 45576643 4443 33 2 56677766532 212 222222 22222222332222 78889999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-eEEeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCe---EeccCCC----
Q 015230 312 KITGELTQGIIDAGKKAGHA-ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFAPSQF---- 383 (411)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~v~~~~~---- 383 (411)
++.+++++.|+++...++.. ......-.-+.+.+..... ........+...|..++| -|.+.+.
T Consensus 343 ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i 414 (501)
T 3hl2_A 343 EMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTV 414 (501)
T ss_dssp HHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcCCCcceeecCCCceEE
Confidence 99999999999997755522 2222122233444422110 122345788899988855 3323211
Q ss_pred ---------------cc--eee--ecCCCHHHHHHHHHHHHHHHHh
Q 015230 384 ---------------EA--GFT--SLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 384 ---------------~~--~~~--~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
+. +.. ...++++|+|.++++|++++.+
T Consensus 415 ~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 415 SGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 01 222 3677999999999999999865
No 232
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.59 E-value=1.6e-15 Score=141.11 Aligned_cols=308 Identities=12% Similarity=-0.003 Sum_probs=175.0
Q ss_pred CcHHHHHHHHHHHHcCCCCC-----------CCCHHHHHHHHHHHhhCCC--CCEEEE-eCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGTSFG-----------APCLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~-----------~~~~~~~~l~~~l~~~~~~--~~~v~~-~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+++|++++.+.+.+....+ -..+..++..+.+++.++- .++|+| |.|||++++.++... ..++
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l--~~~g 115 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL--LGDK 115 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc--cCCC
Confidence 78999999987765421110 0133445667777777763 357888 689999999999754 2345
Q ss_pred cEEEEEeCCcCCCchhhhhhcCC-CCcccCCC-CCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCC
Q 015230 119 ERIIKFEGCYHGHADPFLVKAGS-GVATLGLP-DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~ 196 (411)
+++++...+.++.. ....+... .+.+++.+ ...+.. + ++++++..++ +++++|++..+.+.+
T Consensus 116 d~v~~~~~~~~~~~-~~~~a~~~G~v~~v~~~~~~~G~~---------~---~~~~~~~~l~---~~t~lV~~~h~et~t 179 (386)
T 3qm2_A 116 TTADYVDAGYWAAS-AIKEAKKYCAPQIIDAKITVDGKR---------A---VKPMREWQLS---DNAAYLHYCPNETID 179 (386)
T ss_dssp CEEEEEESSHHHHH-HHHHHTTTSEEEEEECEEEETTEE---------E---ECCGGGCCCC---TTCSCEEECSEETTT
T ss_pred CeEEEEeCCHHHHH-HHHHHHHhCCeEEEecCcccCCCC---------C---CchHHHhhcC---CCCcEEEEECCcCCc
Confidence 67766666655431 11112111 22222211 001110 0 3344444443 456778887777778
Q ss_pred Ccc-CCCHHHHHHHHHHHHHhCCEEEEeccccccccc-cCccccccCCCcchhhhhhhccCCcccccccccHHHHHHhcC
Q 015230 197 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLA-YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP 274 (411)
Q Consensus 197 G~~-~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g-~~~~~~~~~~~~d~~~~sK~~~~G~~~g~~~~~~~~~~~~~~ 274 (411)
|.+ .| +++|. +|+++++|.+|+ .| ....++.++ .++.+.-|+++. --+|+++.++++++.+.+
T Consensus 180 G~~i~p----i~~i~-----~g~~~~vDa~qs---~g~~pidv~~~~--~~~~s~hK~lGP-~G~g~l~v~~~~~~~~~~ 244 (386)
T 3qm2_A 180 GIAIDE----TPDFG-----PEVVVTADFSST---ILSAPLDVSRYG--VIYAGAQKNIGP-AGLTLVIVREDLLGKAHE 244 (386)
T ss_dssp TEECCC----CCCCC-----TTCCEEEECTTT---TTSSCCCGGGCS--EEEEETTTTTCC-TTEEEEEEEGGGCSCCCT
T ss_pred CEecCc----hhhhc-----CCCEEEEEcccc---cCCCCCCccccC--EEEEecccccCC-CccEEEEECHHHHhhhcc
Confidence 985 77 66664 899999999997 22 222333333 355677799952 117888888877654443
Q ss_pred CCCccc--------cc-CCCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHHHHhcCCceE---Ee-ee
Q 015230 275 AGPMYQ--------AG-TLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAIC---GG-YI 337 (411)
Q Consensus 275 ~~~~~~--------~~-t~~~~~~~~a~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~-~~ 337 (411)
..+.+. .. ..+++..+..+..++++.+.+ ++..++.+++.+++++.|+++ ++... .. ..
T Consensus 245 ~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~----~~~~~~~~~~~rs 320 (386)
T 3qm2_A 245 SCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS----DFYRNDVAQANRS 320 (386)
T ss_dssp TSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC----SSEECCBCGGGBC
T ss_pred cCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC----CCcccCCCHHHcC
Confidence 212110 00 123454555555666665543 445566666667777766654 32111 11 12
Q ss_pred cceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 338 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
..++.|.+.+ ...+ ..+...|.++||.+..+.. ..+|++ ..+|++|+|++++.|+++.++
T Consensus 321 ~~iv~f~~~~------------~~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 321 RMNVPFQLAD------------NTLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp SSEEEEEESS------------GGGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCC------------cccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3466666632 1122 4566778899999987632 347775 456899999999999998764
No 233
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.57 E-value=6.3e-14 Score=129.21 Aligned_cols=304 Identities=11% Similarity=-0.068 Sum_probs=176.0
Q ss_pred CcHHHHHHHHHHHHcCCCC-------CCC----CHHHHHHHHHHHhhCCC--CCEEEE-eCChHHHHHHHHHHHHhccCC
Q 015230 53 ADDQVLAALGETMKKGTSF-------GAP----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 118 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-------~~~----~~~~~~l~~~l~~~~~~--~~~v~~-~~~g~~a~~~al~~~~~~~~~ 118 (411)
.+|+|++++.+.+.+.... ... .+..++..+.+++.++. ..+|+| |.|||++++.++.... ++
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~---~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA---LN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC---CS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC---CC
Confidence 7899999999887642111 111 24456677777777762 458888 9999999999998542 44
Q ss_pred cEEEEEeCCcCCCchhh-hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCC
Q 015230 119 ERIIKFEGCYHGHADPF-LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 197 (411)
Q Consensus 119 ~~vi~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G 197 (411)
+++.+...+.+++.... ....|..+.+++.+....+.. +++. + ++ +++++|.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~------------~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDH------------IPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCS------------CCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCc------------CChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 44433333333331111 112244444433332211100 1222 2 33 3566677766666678
Q ss_pred ccCCCHHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchh--hhhhhccCCcccccccccHHHHHHhcC-
Q 015230 198 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAP- 274 (411)
Q Consensus 198 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~~~~~~~~~~- 274 (411)
.+.++ +++ +|+++++|.+|+ .|.. .++.- ..|++ +..|+++. --+|+++.++++++.+.+
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~---~g~~-~id~~--~~d~~~~s~~K~~gp-~G~g~l~~~~~~~~~~~~~ 217 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD---FFSR-KVDFS--NIALFYGGVQKNAGI-SGLSCIFIRKDMLERSKNK 217 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG---TTSS-CCCCT--TEEEEEEETTTTSSC-TTCEEEEEEHHHHHHHHTC
T ss_pred eeCCc---------ccc-cCCEEEEEcccc---cCCC-CCCcc--cCCEEEEechhccCC-CccEEEEEcHHHHhhhcCC
Confidence 87662 333 499999999997 2211 11111 23555 45599952 117888999998877654
Q ss_pred CCCccc--------ccC-CCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHhcC-CceE---E-ee
Q 015230 275 AGPMYQ--------AGT-LSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAG-HAIC---G-GY 336 (411)
Q Consensus 275 ~~~~~~--------~~t-~~~~~~~~a~~~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~---~-~~ 336 (411)
..+.+. ..+ .+++..+..+..++++.+.+. +..++.+++.+++++.|+++ + +... . ..
T Consensus 218 ~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~~~~~~r 293 (361)
T 3m5u_A 218 QIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS----NGFYKGHADKKDR 293 (361)
T ss_dssp CCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS----TTSEEESSCGGGB
T ss_pred CCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC----CCeeeccCCHHHc
Confidence 112111 112 355666777777888877643 34455666666666666554 3 2111 0 11
Q ss_pred ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccCCC--cceeee--cCCCHHHHHHHHHHHHHHHHh
Q 015230 337 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTS--LAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 337 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~~~~~--~~~t~~~i~~~i~~l~~~~~~ 410 (411)
...++.|.+.+. ...+ ..+.+.|.++||.+..+.. ..+|++ ...|++|++++++.|+++.++
T Consensus 294 s~~ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 294 SLMNVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CSSEEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 234566666320 1122 3677888999999987732 347775 456999999999999998764
No 234
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.55 E-value=2.4e-14 Score=142.05 Aligned_cols=308 Identities=8% Similarity=-0.002 Sum_probs=178.2
Q ss_pred CHHHHHHHHHHHhhCCCCCEEEEeCCh-HHHHHHHHHHHHhccCCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCCCC
Q 015230 75 CLLENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 153 (411)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~v~~~~~g-~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (411)
+....++.+.+++.+ +.++.+++++| +.|+.+++.. ...+++.|++..++|.+ ...++...|..+.+++... ..
T Consensus 194 ~g~i~eaE~~lA~~f-Ga~~a~~v~nGts~An~~ai~a--l~~pGD~VLv~r~~H~S-~~~~l~lsGa~pv~v~~~~-~~ 268 (715)
T 3n75_A 194 SGPHKEAEQYIARVF-NADRSYMVTNGTSTANKIVGMY--SAPAGSTILIDRNCHKS-LTHLMMMSDVTPIYFRPTR-NA 268 (715)
T ss_dssp BTHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--HCCTTCEEEEESSCCHH-HHHHHHHSCCEEEEECCCB-CT
T ss_pred cHHHHHHHHHHHHHh-CCCCceEECcHHHHHHHHHHHH--hCCCCCEEEECCCccHH-HHHHHHHcCCEEEEEeccc-cc
Confidence 444567777777777 44555555445 6898888874 24456677776666654 4445566666554433221 11
Q ss_pred CCCCCCCceeecCCC------CHHHHHHHHHcCCCcE---EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 154 VPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 154 ~~~~~~~~~~~~~~~------d~~~l~~~~~~~~~~~---~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
+ .++++ |+++++++++++++.. .+++++| +..|.+.+ +++|.++|++++ +++||
T Consensus 269 ~---------gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE 331 (715)
T 3n75_A 269 Y---------GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp T---------CCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred c---------ccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence 1 11111 7999999998754322 4566666 66888888 999999998763 79999
Q ss_pred ccccc-ccccCc----cccccCCCcc-----hhhhhhhccCCcc-cccccccHHH-HHHhcCCCCcccccCCCCCHHHHH
Q 015230 225 VMTGF-RLAYGG----AQEYFGVTPD-----LTTLGKIIGGGLP-VGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMT 292 (411)
Q Consensus 225 ~~~g~-~~g~~~----~~~~~~~~~d-----~~~~sK~~~~G~~-~g~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~a 292 (411)
+|+.. ..++.+ ++. .+..+| +.|++|+++| +. .|++.++.++ .+.+.. ......+.+++++.++
T Consensus 332 AH~~~~~f~~~~~~~~al~-~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVA 407 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTS-SSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHH
T ss_pred ccccccccCCccccccccc-cCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHH
Confidence 99733 222211 111 121245 3489999874 22 4566554331 111211 0112235567888888
Q ss_pred HHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhcCC-ceEE------eee------------------cceEEEE
Q 015230 293 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH-AICG------GYI------------------SGMFGFF 344 (411)
Q Consensus 293 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~------~~~------------------g~~~~~~ 344 (411)
+..++++.+.. ++++++..++.+++++.|+++....+. ...+ ... .....++
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~D 487 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEEC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCC
Confidence 88888877752 578899999999999999988532110 0000 000 0011122
Q ss_pred EecCCCC--Ccch--hcccchHHHHHHHHHHHHcCeEeccCCCccee-e-ecCCCHHHHHHHHHHHHHHH
Q 015230 345 FTEGPVY--NFED--AKKSETTKFARFYRGMLEEGVYFAPSQFEAGF-T-SLAHSSDDIQHTITAAEKVL 408 (411)
Q Consensus 345 ~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~-~-~~~~t~~~i~~~i~~l~~~~ 408 (411)
..+..+. .+.. .....+..+..+.+.|.++||.+.-...+.+- + +...|++++++++++|.+.-
T Consensus 488 p~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~ 557 (715)
T 3n75_A 488 PIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (715)
T ss_dssp TTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1110000 0000 00001233467888999999999876655543 2 67779999999999987653
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.53 E-value=6.5e-13 Score=124.31 Aligned_cols=306 Identities=12% Similarity=0.001 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHhhCC--CCCEEEEeCChH-HHHHHHHHHHHhcc-CCcEEEEEeCCcCCCchhhhhhcCCCCcccCCCCC
Q 015230 76 LLENVLAEMVISAVP--SIEMVRFVNSGT-EACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 151 (411)
Q Consensus 76 ~~~~~l~~~l~~~~~--~~~~v~~~~~g~-~a~~~al~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 151 (411)
...+.+..|+.+.++ .....++++|+| .++.++|..++... +.+.||+. ..-|.....++.+.|.++.++.....
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 456678888888776 345668898887 55555555555422 24555555 55888888888888876555432111
Q ss_pred CCCCCCCCCceeecCCCCHHHHHHHHHcCC-CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccccc-
Q 015230 152 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 229 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~g~- 229 (411)
.. ...+ |++.+++++++++ +.+.+|+.+|.+..+|.+.+ +++|.++|++||+++++|++|.+.
T Consensus 177 ~~--------~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 177 GD--------ELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp TT--------EEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred Cc--------cCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 11 1111 8999999998765 46788888887776677777 999999999999999999999743
Q ss_pred ccccCccccccCC-Ccchh--hhhhhccCCcccccccc-cHHHHHHhcCCCCcccccCCCCCHHHHHHHHHHHHHHhc--
Q 015230 230 RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 303 (411)
Q Consensus 230 ~~g~~~~~~~~~~-~~d~~--~~sK~~~~G~~~g~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~a~~~~~l~~~~~-- 303 (411)
+....+....+.. ..|++ +.-|++..-...+.+.. +++.++.+.. .+.+ ..+.+| ++......+..-.+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g-~~s~Sp-sL~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPG-RASASP-SLDVLITLLSLGCSGY 316 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCS-CBCSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhhc-CCcccH-HHHHHHHHHHHHHHHH
Confidence 3211111111111 23554 55688875333445543 5556665542 1211 111122 22222222222111
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhcCCceE-EeeecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcC---eEec
Q 015230 304 PGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG---VYFA 379 (411)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G---i~v~ 379 (411)
+++.++..++.+++++.|+++...++.... ....+.-..+.+.... ...+.+..++.-.+...| .-+.
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~--------~~~~~D~tkl~i~~~~~g~sG~~v~ 388 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTID--------GHHDKAVTQLGSMLFTRQVSGARAV 388 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTS--------SSSSCHHHHHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccc--------ccccCCCceeEEEecCCCCccceee
Confidence 345556688889999999988755553211 0101111112221100 011123356666666654 2222
Q ss_pred ---------------------cCCCcce--eeecCCCHHHHHHHHHHHHHHHHh
Q 015230 380 ---------------------PSQFEAG--FTSLAHSSDDIQHTITAAEKVLRQ 410 (411)
Q Consensus 380 ---------------------~~~~~~~--~~~~~~t~~~i~~~i~~l~~~~~~ 410 (411)
-.....+ .++...+++++++++++|+++.++
T Consensus 389 ~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 389 PLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp CSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1111112 225778999999999999987653
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.21 E-value=6.9e-10 Score=102.26 Aligned_cols=312 Identities=16% Similarity=0.080 Sum_probs=167.1
Q ss_pred CcHHHHHHHHHHHHcCCCCCCC-----------CHHHHHHHHHHHhhCC-CCC-E--EEEeCChHHHHHHHHHHHHhccC
Q 015230 53 ADDQVLAALGETMKKGTSFGAP-----------CLLENVLAEMVISAVP-SIE-M--VRFVNSGTEACMGVLRLARAFTG 117 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~~~~-----------~~~~~~l~~~l~~~~~-~~~-~--v~~~~~g~~a~~~al~~~~~~~~ 117 (411)
..|.|++++-..+.+--.-+|+ ++.+....++..+.++ ... . =+-..||+.|+.+++.. .+.+
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~A--ll~P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA--LLQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HCC-
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHH--HcCC
Confidence 5666666666666552111111 3444445556667775 332 1 24556899999998874 3456
Q ss_pred CcEEEEEeCCcCCCchhh-------hhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEc
Q 015230 118 RERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 190 (411)
Q Consensus 118 ~~~vi~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~ 190 (411)
++.|+.++...-|+..-. ...+|......++.... ....+ |.+.+++..+++ ++++|++-
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~--------~t~~I---Dyd~~~~~A~~~--kPklIi~G 210 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP--------KTGLI---DYNQLALTARLF--RPRLIIAG 210 (490)
T ss_dssp CCCEECBC----------------------------CBCEET--------TTTEE---CHHHHHHHHHHH--CCSEEEEC
T ss_pred CCEEEecccCCCCcccccccCCCcccccccccccccccccCC--------CCCcc---cHHHHHHHHhhc--CCCeEEEC
Confidence 788888777655543211 11112111111110000 00011 899999988865 67788875
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEecccc-cc-ccccC-ccccccCCCcchh--hhhhhccCCccccccccc
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 265 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~~-g~-~~g~~-~~~~~~~~~~d~~--~~sK~~~~G~~~g~~~~~ 265 (411)
... ..-..+ +++++++|++.|.+|++|-+|. |+ -.|.+ ..+++ .|++ |.-|+|.| -|-|.+.++
T Consensus 211 ~Sa--Y~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~----ADvVTtTTHKTLrG-PrGG~Il~~ 279 (490)
T 3ou5_A 211 TSA--YARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH----ADIVTTTTHKTLRG-ARSGLIFYR 279 (490)
T ss_dssp CSS--CCSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT----CSEEEEESSSTTCS-CSCEEEEEE
T ss_pred Ccc--CccccC----HHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc----ceEEeccccccccC-CCceEEEec
Confidence 422 122234 9999999999999999999994 77 44422 12221 3666 45699975 245555555
Q ss_pred H---------------HHHHHhcCC-CCcccccCCCCCHHHHHHHHHHH-HHHhc--CChHHHHHHHHHHHHHHHHHHHH
Q 015230 266 R---------------DIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTL-KRLKE--PGTYEYLNKITGELTQGIIDAGK 326 (411)
Q Consensus 266 ~---------------~~~~~~~~~-~~~~~~~t~~~~~~~~a~~~~~l-~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 326 (411)
+ ++.+.+... -+...+ ++.....++-..++ +.+.. ++..+++.++++.+.+.|.+.
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qg---gp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-- 354 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINFAVFPSLQG---GPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-- 354 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHHHHTTTTCS---SCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cccccccccccchhHHHHHHHHHhhcCccccc---cchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC--
Confidence 4 223333210 012222 22222223322223 33332 567788888999998888876
Q ss_pred hcCCceEEee-ecceEEEEEecCCCCCcchhcccchHHHHHHHHHHHHcCeEeccC----C-----Ccceee------ec
Q 015230 327 KAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----Q-----FEAGFT------SL 390 (411)
Q Consensus 327 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~-----~~~~~~------~~ 390 (411)
++.....+ ...++++++.+.. .+.++..+.|.+.||.+... . ...+|+ ..
T Consensus 355 --G~~vvsGgTdnHlvLvDl~~~g------------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtR 420 (490)
T 3ou5_A 355 --GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSR 420 (490)
T ss_dssp --TCEEGGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHT
T ss_pred --CCeeecCCCCceEEEEeccccC------------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhC
Confidence 32211111 2457778775432 12356677788889988532 1 123677 25
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 015230 391 AHSSDDIQHTITAAEKVLR 409 (411)
Q Consensus 391 ~~t~~~i~~~i~~l~~~~~ 409 (411)
...++|++++.+.|.+++.
T Consensus 421 G~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 421 QFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6788999888888887664
No 237
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=74.08 E-value=6.2 Score=30.56 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=37.0
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHH-HHHHHhCCEEE-Eecccc
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR-RITKENGALLI-FDEVMT 227 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~-~l~~~~~~~li-~De~~~ 227 (411)
+.+.+.+.++++ ++..+++.-+.++.|.........+... .++.+.+++++ +||-++
T Consensus 43 ~~~~l~~li~~~--~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDY--TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTS--EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 688999999865 6777777754555455444333233444 44556788655 899997
No 238
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=62.14 E-value=17 Score=32.94 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc-CCcccccccccHHHH
Q 015230 204 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 269 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~~ 269 (411)
+.+++|.++|+++|.-+++|=.-. .++.+|+.++-+++=|-+| .|+|+=+-...++..
T Consensus 74 ~~~~~l~~~a~~~g~~vi~DVsp~--------~~~~Lg~s~~dl~~f~~lGi~gLRLD~Gf~~~eia 132 (385)
T 1x7f_A 74 AEFKEIINHAKDNNMEVILDVAPA--------VFDQLGISYSDLSFFAELGADGIRLDVGFDGLTEA 132 (385)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTT--------CC------CCCTHHHHHHTCSEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCHH--------HHHHcCCCHHHHHHHHHcCCCEEEEcCCCCHHHHH
Confidence 449999999999999999995553 3445666666666667777 478866554444443
No 239
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=58.89 E-value=9.1 Score=31.13 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=30.4
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
-.+++++||-..+..|.... +.++.+++++||+.+|.
T Consensus 158 l~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 158 LQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp SCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 46889999988455577777 99999999999998873
No 240
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=53.11 E-value=8.2 Score=26.36 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 015230 206 LNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~ 227 (411)
-.+|++++++||++++.|..-+
T Consensus 29 A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 7899999999999999998664
No 241
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=49.93 E-value=20 Score=29.15 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=29.0
Q ss_pred CcEEEEEEccc-CCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 182 GEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 182 ~~~~~vi~~~~-~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
-.+++++||-+ .+..|.... +.++.+++++||+.+|.
T Consensus 157 l~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 157 LQPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp SCSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 36789999983 234566666 89999999999999883
No 242
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=47.50 E-value=21 Score=29.52 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.2
Q ss_pred CCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 181 ~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
+-++++++||=.+.. |.... +.++.++|++||+.+|.
T Consensus 176 Gl~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEEE
Confidence 346899999988655 66666 89999999999998883
No 243
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=46.87 E-value=12 Score=26.49 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCEEEEecccc
Q 015230 204 DFLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~~ 227 (411)
+.-++|+++|++||++++.|..-+
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHHcCCeEEECHHHH
Confidence 337899999999999999998664
No 244
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=46.33 E-value=12 Score=26.16 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 015230 205 FLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~ 227 (411)
.-.+|+++|+++|++++.|..-+
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEECHHHH
Confidence 37899999999999999998664
No 245
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=45.04 E-value=13 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 015230 205 FLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~ 227 (411)
.-.+|+++|+++|++++.|..-+
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCeecCHHHH
Confidence 37899999999999999997664
No 246
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=43.25 E-value=27 Score=24.63 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=27.9
Q ss_pred CHHHHHHHHHcCCCcEEE-EEEcccCCCCCccCCCHHHHHHHHH-HHHHhCCEEE-Eecccc
Q 015230 169 DVSALENLFENNKGEIAA-IILEPVVGNSGFIAPKPDFLNAIRR-ITKENGALLI-FDEVMT 227 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~-vi~~~~~~~~G~~~~~~~~l~~i~~-l~~~~~~~li-~De~~~ 227 (411)
+.+.+++.++++ ++.. |+=.|.+. .|...+..+..++..+ +.++ +++++ +||-++
T Consensus 39 ~~~~l~~li~e~--~v~~iVvGlP~~m-dGt~~~~~~~~~~f~~~L~~~-~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRRE--GLGKLVVGLPLRT-DLKESAQAGKVLPLVEALRAR-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHH--TCCEEEEECCCCC-CSSSCCCSSTTHHHHHHHHHT-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeccCC-CCCcCHHHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence 467788888764 3444 44445443 2333332211223222 3333 77665 898765
No 247
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=41.46 E-value=30 Score=31.11 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccccccccCccccccCCCcchhhhhhhcc-CCcccccccccHHH
Q 015230 203 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 268 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~~g~~~g~~~~~~~~~~~~d~~~~sK~~~-~G~~~g~~~~~~~~ 268 (411)
.+.+++|.++|+++|.-+++|=.-. .++.+|+.++-+++=|-+| .|+|+=+-...++.
T Consensus 49 ~~~~~~l~~~a~~~g~~vi~DIsp~--------~l~~Lg~s~~dl~~~~~lGi~glRLD~Gf~~~ei 107 (372)
T 2p0o_A 49 RQRLTDLGAIAKAEKMKIMVDISGE--------ALKRAGFSFDELEPLIELGVTGLRMDYGITIEQM 107 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECHH--------HHHTTTCBTTBCHHHHHHTCCEEEECSSCCHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHH--------HHHHcCCCHHHHHHHHHcCCCEEEEcCCCCHHHH
Confidence 3449999999999999999996554 3455666666666677777 57887655444444
No 248
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=39.83 E-value=33 Score=28.21 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.3
Q ss_pred CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEE
Q 015230 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 221 (411)
Q Consensus 182 ~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li 221 (411)
-.+++++||-.+ ..|.... +.++.+++++||+.+|
T Consensus 166 l~Pa~vicEi~~-~dG~mar----~~~l~~fA~~h~l~~i 200 (217)
T 1g57_A 166 FKPAGVLCELTN-DDGTMAR----APECIEFANKHNMALV 200 (217)
T ss_dssp SCSCEEEEEBBC-TTSSBCC----HHHHHHHHHHTTCEEE
T ss_pred CCceEEEEEEeC-CCCCccC----HHHHHHHHHHcCCCEE
Confidence 367889998764 4466666 8999999999999888
No 249
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=37.51 E-value=1.7e+02 Score=25.62 Aligned_cols=118 Identities=17% Similarity=0.125 Sum_probs=61.4
Q ss_pred HHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCCcCCCchh---hhhhcCCCCcccCCCCCCCCC
Q 015230 79 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVP 155 (411)
Q Consensus 79 ~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~ 155 (411)
+.+++.-.+.. ....+++|.+.+..+...|+.+....++-+|++.+. -+. ..+ +..+... |+
T Consensus 109 ~~I~~~~~~~I-~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~Es-rP~-~qG~~la~~L~~~-----------gI- 173 (315)
T 3ecs_A 109 NKIADLCHTFI-KDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTES-QPD-LSGKKMAKALCHL-----------NV- 173 (315)
T ss_dssp HHHHHHHGGGC-CTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECC-TTT-THHHHHHHHHHTT-----------TC-
T ss_pred HHHHHHHHHHc-CCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecC-CCc-chHHHHHHHHHHc-----------CC-
Confidence 34444444444 345678888777788887876544444456666543 221 111 1222211 11
Q ss_pred CCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 156 KGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 156 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
++..++ | ..+...+++. +...+=.+.+..+||.+..-- --.++-+|+.|++++++=
T Consensus 174 -----~vtli~--D-sa~~~~m~~v--d~VivGAd~i~~nG~v~nkiG--T~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 174 -----PVTVVL--D-AAVGYIMEKA--DLVIVGAEGVVENGGIINKIG--TNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp -----CEEEEC--G-GGHHHHGGGC--SEEEEECSEECTTSCEEEETT--HHHHHHHHHHTTCCEEEE
T ss_pred -----CEEEEe--h-hHHHHHHHhC--CEEEECceEEecCCCeeehhh--hHHHHHHHHHhCCCEEEE
Confidence 222232 2 2233344421 233333445667777766533 356788999999998863
No 250
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=35.70 E-value=1.2e+02 Score=27.32 Aligned_cols=147 Identities=9% Similarity=0.052 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHHcCCC-----CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccC--CcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG--RERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~--~~~vi~~~ 125 (411)
.+.++.+.+.+.++.+.. .+...+...+..+.+.+.+|..-.+.+=..+.=....|+++++.+.. -+ +..++
T Consensus 142 ~~e~~~~~a~~~~~~Gf~~~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~-l~~iE 220 (379)
T 3r0u_A 142 NVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLN-VEIIE 220 (379)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCC-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCC-cEEEE
Confidence 445566667666665421 12222334555666777776333455544444445667776666655 33 44444
Q ss_pred CCcCC-CchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 126 GCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 126 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.+.+. .......+... ..+++..... ..+..++++.++.. ..-++.+.+.. .|.+..
T Consensus 221 eP~~~~d~~~~~~l~~~--~~iPIa~dE~-------------~~~~~~~~~~i~~~--a~d~v~~k~~~--~GGi~~--- 278 (379)
T 3r0u_A 221 QPVKYYDIKAMAEITKF--SNIPVVADES-------------VFDAKDAERVIDEQ--ACNMINIKLAK--TGGILE--- 278 (379)
T ss_dssp CCSCTTCHHHHHHHHHH--CSSCEEESTT-------------CSSHHHHHHHHHTT--CCSEEEECHHH--HTSHHH---
T ss_pred CCCCcccHHHHHHHHhc--CCCCEEeCCc-------------cCCHHHHHHHHHcC--CCCEEEECccc--cCCHHH---
Confidence 44432 22222222111 0001000111 11678888888742 34455555533 455555
Q ss_pred HHHHHHHHHHHhCCEEEEe
Q 015230 205 FLNAIRRITKENGALLIFD 223 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~D 223 (411)
..+|+++|+++|+.+..-
T Consensus 279 -~~~ia~~A~~~gi~~~~~ 296 (379)
T 3r0u_A 279 -AQKIKKLADSAGISCMVG 296 (379)
T ss_dssp -HHHHHHHHHHTTCEEEEC
T ss_pred -HHHHHHHHHHcCCEEEEe
Confidence 899999999999998864
No 251
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=34.25 E-value=30 Score=29.16 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCcEEEEEE-cccCC---CCCccCCCHH---HHHHHHHHHHHhCCEEEEec
Q 015230 170 VSALENLFENNKGEIAAIIL-EPVVG---NSGFIAPKPD---FLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~-~~~~~---~~G~~~~~~~---~l~~i~~l~~~~~~~li~De 224 (411)
.+.++++++. .+.+|.+ +...+ -.|.. .+.+ +.+++.++|++|++++|+++
T Consensus 46 ~~~~~~al~~---Gv~~vqlR~K~~~~~~~~~~l-~~~~~~~~a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 46 AQFAEAALAG---GVDIIQLRDKGSPGELRFGPL-QARDELAACEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHHT---TCSEEEECCTTCHHHHHHCSC-CHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHC---CCCEEEEccCCCCccccccCC-CHHHHHHHHHHHHHHHHhhCCEEEEeC
Confidence 5667777773 3455555 33211 00111 1222 24788999999999999855
No 252
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=33.69 E-value=36 Score=28.21 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=29.6
Q ss_pred CcEEEEEEcccCCC----------CCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 182 GEIAAIILEPVVGN----------SGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 182 ~~~~~vi~~~~~~~----------~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
-.+++++||-.+.. .|.... +.++.+++++||+.++.
T Consensus 166 l~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 166 KRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 46788999877651 466666 99999999999998883
No 253
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=39.38 E-value=9 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 015230 206 LNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~ 227 (411)
-.+|++++++||++++.|..-+
T Consensus 29 A~~I~e~A~e~~VPi~e~~~LA 50 (87)
T 3b1s_B 29 AQKIVEIAENYSIPVVRKPELA 50 (87)
Confidence 6789999999999999997664
No 254
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=33.10 E-value=2.6e+02 Score=24.76 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=73.1
Q ss_pred CcHHHHHHHHHHHHcCCC-----CCCCCHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEeCC
Q 015230 53 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 127 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~~~ 127 (411)
.+.++.+.+.+.++.+.. .+...+...+..+.+.+..+..-.+.+=.++.=..+.+++.++.+..-+ +..++.+
T Consensus 139 ~~~~~~~~a~~~~~~G~~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~-i~~iEqP 217 (354)
T 3jva_A 139 EPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQ-IELVEQP 217 (354)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSC-EEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcC-CCEEECC
Confidence 455566666666665321 1222233345555566666432244443333334455666665654433 4444444
Q ss_pred cCC-CchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecC-CCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHH
Q 015230 128 YHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP-FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 205 (411)
Q Consensus 128 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~ 205 (411)
++. .......+... ... ++...+ ..+.+++++.++.. ..-.+.+.+.. .|.++.
T Consensus 218 ~~~~d~~~~~~l~~~----~~i------------PIa~dE~~~~~~~~~~~l~~~--~~d~v~~k~~~--~GGit~---- 273 (354)
T 3jva_A 218 VKRRDLEGLKYVTSQ----VNT------------TIMADESCFDAQDALELVKKG--TVDVINIKLMK--CGGIHE---- 273 (354)
T ss_dssp SCTTCHHHHHHHHHH----CSS------------EEEESTTCCSHHHHHHHHHHT--CCSEEEECHHH--HTSHHH----
T ss_pred CChhhHHHHHHHHHh----CCC------------CEEEcCCcCCHHHHHHHHHcC--CCCEEEECchh--cCCHHH----
Confidence 432 22222111111 000 111100 12678888888743 34455555433 355555
Q ss_pred HHHHHHHHHHhCCEEEEec
Q 015230 206 LNAIRRITKENGALLIFDE 224 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De 224 (411)
..+++++|+++|+.+++-.
T Consensus 274 ~~~i~~~A~~~gi~~~~~~ 292 (354)
T 3jva_A 274 ALKINQICETAGIECMIGC 292 (354)
T ss_dssp HHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHcCCeEEecC
Confidence 8899999999999987643
No 255
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=32.78 E-value=1.1e+02 Score=25.03 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCC---CCcc-CCCHHHHHHHHHHHHHhCCEEE
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGN---SGFI-APKPDFLNAIRRITKENGALLI 221 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~---~G~~-~~~~~~l~~i~~l~~~~~~~li 221 (411)
++.+-+.+++. ....|++.|.... .|.+ ....+|-+.+.++|+++++++|
T Consensus 114 l~~~i~~~~~~--g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 114 LENAAKLFTAK--GAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp HHHHHHHHHHT--TCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHC--CCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 34444444333 3456777775322 2332 3445778899999999998765
No 256
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=31.09 E-value=28 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 015230 205 FLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~ 227 (411)
.-.+|+++|++||++++.|..-+
T Consensus 72 ~A~~I~~~A~e~~VPi~e~~~LA 94 (123)
T 2jli_A 72 QVQTVRKIAEEEGVPILQRIPLA 94 (123)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEeCHHHH
Confidence 37889999999999999998664
No 257
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=30.27 E-value=1.8e+02 Score=24.79 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=25.4
Q ss_pred EEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 185 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 185 ~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
..+=.+.+..+||.....- -..++.+|++|++++++
T Consensus 181 vivGAd~i~~nG~v~nkiG--t~~iA~~A~~~~vp~~V 216 (276)
T 1vb5_A 181 AIVGADMITKDGYVVNKAG--TYLLALACHENAIPFYV 216 (276)
T ss_dssp EEECCSEECTTSCEEEETT--HHHHHHHHHHTTCCEEE
T ss_pred EEEcccEEecCCCEeechh--HHHHHHHHHHcCCCEEE
Confidence 3344555677777766533 56788899999998876
No 258
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=29.61 E-value=30 Score=26.13 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 015230 205 FLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De~~~ 227 (411)
.-.+|+++|++||++++.|..-+
T Consensus 82 ~A~~I~e~A~e~gVPi~e~~~LA 104 (137)
T 3bzs_A 82 KALQIIKLAELYDIPVIEDIPLA 104 (137)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEeCHHHH
Confidence 37789999999999999998664
No 259
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=29.19 E-value=2.3e+02 Score=24.46 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCC----C-------CccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGN----S-------GFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~----~-------G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
+.-|.+........+++++++|.... + -... ++..+.++++.+..+++++|.|
T Consensus 75 L~~L~~~fp~~f~~ikWvLiDPap~~~~l~~~~NV~li~~fv-de~dl~~l~~~~~~~~iLLISD 138 (307)
T 3mag_A 75 IRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFV-DEEYLRSIKKQLHPSKIILISD 138 (307)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESSCCCGGGTTCTTEEEEECCC-CHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHHhchhhCCCeEEEEEcCCcchhhhcCCCcEEEEeccC-CHHHHHHHHHhccCCCEEEEEE
Confidence 44445555443346777777774432 0 0112 4555777777777889999998
No 260
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=28.95 E-value=38 Score=29.89 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=32.4
Q ss_pred CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCC--HHHHHHHHHHHHHhCCEEEEec
Q 015230 169 DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPK--PDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 169 d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~--~~~l~~i~~l~~~~~~~li~De 224 (411)
+.++++.+.++ .-+.+++-+.. . .+|....+ .+.++++.+.|+++|+.+|+|-
T Consensus 70 ~~~~~~~l~~~~G~N~VRi~~~~-~--~~~~~~~~~~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 70 NKDSLKWLRDDWGITVFRAAMYT-A--DGGYIDNPSVKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp SHHHHHHHHHHTCCSEEEEEEES-S--TTSTTTCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEeEE-C--CCCcccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45666665443 23456665532 1 23333222 3558899999999999999884
No 261
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=28.25 E-value=1.7e+02 Score=21.25 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=31.4
Q ss_pred ceeecCCCCHHHHHHHHHc----CC----CcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEE
Q 015230 161 ETLTAPFNDVSALENLFEN----NK----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLI 221 (411)
Q Consensus 161 ~~~~~~~~d~~~l~~~~~~----~~----~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li 221 (411)
.+...+..|++.+.+.+++ .+ +.+.++=+.... .-.+ +.+|.++|++||+.+|
T Consensus 18 ~vl~l~~~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~----~~~d----l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 18 SVVHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLE----SPVN----WPELHKIVTSTGLRII 78 (120)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECC----SSCC----HHHHHHHHHTTTCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhChHhhCCCcEEEEccccC----ChHH----HHHHHHHHHHcCCEEE
Confidence 3555556677776666653 22 223333233222 1123 9999999999999876
No 262
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=27.80 E-value=1.5e+02 Score=26.44 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=34.2
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
+.+++++.++.. ..-++.+.+ ...|.+.. ..++.++|+++|+.++.-
T Consensus 246 ~~~~~~~~~~~~--~~d~v~~k~--~~~GGit~----~~~i~~~A~~~gi~~~~~ 292 (368)
T 3q45_A 246 NSFDAERLIQIQ--ACDSFNLKL--SKSAGITN----ALNIIRLAEQAHMPVQVG 292 (368)
T ss_dssp SHHHHHHHHHTT--CCSEEEECT--TTTTSHHH----HHHHHHHHHHTTCCEEEC
T ss_pred CHHHHHHHHHcC--CCCeEEech--hhcCCHHH----HHHHHHHHHHcCCcEEec
Confidence 688888888843 344555554 34455666 899999999999988764
No 263
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=27.69 E-value=42 Score=29.17 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=32.2
Q ss_pred CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCC--HHHHHHHHHHHHHhCCEEEEeccc
Q 015230 169 DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPK--PDFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 169 d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~--~~~l~~i~~l~~~~~~~li~De~~ 226 (411)
+.++++.+.++ .-..+++-+.- ..+|....+ .+.++++.+.|+++|+.+|+|--.
T Consensus 45 ~~~~~~~l~~~~G~N~VRip~~~---~~~~~~~~~~~~~~ld~~v~~a~~~Gi~Vild~H~ 102 (303)
T 7a3h_A 45 NYESMKWLRDDWGINVFRAAMYT---SSGGYIDDPSVKEKVKEAVEAAIDLDIYVIIDWHI 102 (303)
T ss_dssp SHHHHHHHHHHTCCCEEEEEEES---STTSTTTCTTHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHhcCCCEEEEEEEe---CCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34555544433 23456665542 123332222 355788999999999999998543
No 264
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=27.68 E-value=34 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 015230 206 LNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~ 227 (411)
-.+|+++|++||++++.|..-+
T Consensus 82 A~~I~e~A~e~gVPi~e~~~LA 103 (144)
T 2jlj_A 82 VQTVRKIAEEEGVPILQRIPLA 103 (144)
T ss_dssp HHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 7789999999999999997664
No 265
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=26.13 E-value=3.6e+02 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
+..++.+.++.. ..-.+.+.+.. |.+.. ..+|+++|+++|+.++.-.
T Consensus 281 ~~~~~~~~i~~~--a~d~i~~k~~~---GGit~----~~~ia~~A~~~gi~~~~~~ 327 (393)
T 3u9i_A 281 SATDAARLARNA--AVDVLNIKLMK---CGIVE----ALDIAAIARTAGLHLMIGG 327 (393)
T ss_dssp SHHHHHHHHHTT--CCSEEEECHHH---HCHHH----HHHHHHHHHHHTCEEEECC
T ss_pred CHHHHHHHHHcC--CCCEEEecccc---cCHHH----HHHHHHHHHHcCCeEEecC
Confidence 678888888743 45566666655 44555 8899999999999988653
No 266
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=26.01 E-value=1.2e+02 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
.....+.+++. +..++++-..- ++.++...|..+|++++++++.-
T Consensus 25 ~~~v~kai~~g--kakLViiA~D~-------~~~~~~~~l~~lc~~~~VP~~~v 69 (121)
T 2lbw_A 25 VKEVVKALRKG--EKGLVVIAGDI-------WPADVISHIPVLCEDHSVPYIFI 69 (121)
T ss_dssp HHHHHHHHHHS--CCCEEEECTTC-------SCTTHHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHcC--CceEEEEeCCC-------CHHHHHHHHHHHHHhcCCcEEEE
Confidence 45566777753 55566664322 22234888999999999988644
No 267
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=25.78 E-value=1.6e+02 Score=21.98 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCcEEEEEEcccCCCCCc-cCCCHHHHHHHHHHHHHhCCEEEEec
Q 015230 172 ALENLFENNKGEIAAIILEPVVGNSGF-IAPKPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 172 ~l~~~~~~~~~~~~~vi~~~~~~~~G~-~~~~~~~l~~i~~l~~~~~~~li~De 224 (411)
.+-+.+++ +++.+||..+..-.... ..+ ...|++.|..|+++++..-
T Consensus 65 ~I~d~I~~--geIdlVInt~~pl~~~~h~~D----~~~IrR~A~~~~IP~~T~l 112 (134)
T 2xw6_A 65 QMGARVAE--GRILAVIFFRDPLTAQPHEPD----VQALLRVCDVHGVPLATNP 112 (134)
T ss_dssp HHHHHHHT--TCEEEEEEECCTTTCCTTSCC----SHHHHHHHHHHTCCEECSH
T ss_pred hHHHHHHC--CCccEEEEccCcccCCCccch----HHHHHHHHHHcCCCeEcCH
Confidence 46667774 47888887774211111 233 8899999999999998553
No 268
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=25.38 E-value=49 Score=28.46 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 015230 204 DFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~ 225 (411)
+.++++.+.|.++|+.+|+|--
T Consensus 79 ~~ld~~v~~a~~~Gi~vild~h 100 (293)
T 1tvn_A 79 SRLDTVVNAAIAEDMYVIIDFH 100 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcC
Confidence 4578889999999999999843
No 269
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=25.18 E-value=2e+02 Score=25.56 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHHcCCCcEEEEEEc--ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe-ccc
Q 015230 173 LENLFENNKGEIAAIILE--PVVGNSGFIAPKPDFLNAIRRITKENGALLIFD-EVM 226 (411)
Q Consensus 173 l~~~~~~~~~~~~~vi~~--~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D-e~~ 226 (411)
.-..+++. ++-+|++- .+..+|+.+..-= --.++-+|+.|++++++= +.+
T Consensus 219 ~~~~M~~~--~Vd~VivGAd~V~aNG~v~NKiG--T~~lAl~Ak~~~vPfyV~ap~~ 271 (347)
T 1t9k_A 219 AGWLMKRG--LIDAVVVGADRIALNGDTANKIG--TYSLAVLAKRNNIPFYVAAPVS 271 (347)
T ss_dssp HHHHHHTT--CCSEEEECCSEEETTSCEEEETT--HHHHHHHHHHTTCCEEEECCGG
T ss_pred HHHHhhcC--CCCEEEECccEEecCCCEEeccc--HHHHHHHHHHcCCCEEEecccc
Confidence 34455532 34444443 3556666554322 457788999999998864 344
No 270
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=24.75 E-value=72 Score=24.06 Aligned_cols=56 Identities=23% Similarity=0.276 Sum_probs=31.5
Q ss_pred CHHHHHHHHHcCCCcEEEEEE-cccCCCCCccCCCHHHHHHHH-HHHHHhCCEEE-Eecccc
Q 015230 169 DVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIR-RITKENGALLI-FDEVMT 227 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~-~~~~~~~G~~~~~~~~l~~i~-~l~~~~~~~li-~De~~~ 227 (411)
+.+.+++.++++ ++..+++ .|.+ +.|...+..+..++.. ++.++.+++++ +||-++
T Consensus 41 ~~~~l~~li~e~--~v~~iVvGlP~~-mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERlT 99 (138)
T 1nu0_A 41 DWNIIERLLKEW--QPDEIIVGLPLN-MDGTEQPLTARARKFANRIHGRFGVEVKLHDERLS 99 (138)
T ss_dssp CHHHHHHHHHHH--CCSEEEEEEEEC-TTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_pred HHHHHHHHHHHc--CCCEEEEecccC-CCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 689999999875 3444444 4543 3344433222222222 23445687655 999887
No 271
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=24.53 E-value=3.9e+02 Score=24.01 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=79.2
Q ss_pred CcHHHHHHHHHHHHcCCC-----CCCC-CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhcc-CCcEEEEEe
Q 015230 53 ADDQVLAALGETMKKGTS-----FGAP-CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-GRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~-----~~~~-~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~-~~~~vi~~~ 125 (411)
.+.++.+.+.+.++.+.. .+.. .+...+..+.+.+.+++ ..+.+=.++.=....|++.++.+. .+-.+..++
T Consensus 144 ~~e~~~~~a~~~~~~G~~~iKlKvg~~~~~~d~~~v~avR~~~~~-~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i~~iE 222 (389)
T 3s5s_A 144 SPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAAAPG-ASLILDGNGGLTAGEALALVAHARRLGADVALLE 222 (389)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEECCGGGTTTHHHHHHHHHHHCTT-CEEEEECTTCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCChHHHHHHHHHHHHhCCC-CeEEEECCCCCCHHHHHHHHHHHhhCCCCeEEEE
Confidence 566677777777666421 1111 22234445556666654 366665555545666776665652 233455555
Q ss_pred CCcCC-CchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 126 GCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 126 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.+.+. .......+...- .+++...... .+..++.+.++.. ..-++.+.+.. |.+..
T Consensus 223 eP~~~~d~~~~~~l~~~~--~iPIa~dEs~-------------~~~~~~~~~i~~~--a~d~v~~k~~~---GGit~--- 279 (389)
T 3s5s_A 223 QPVPRDDWDGMKEVTRRA--GVDVAADESA-------------ASAEDVLRVAAER--AATVVNIKLMK---GGIAE--- 279 (389)
T ss_dssp CCSCTTCHHHHHHHHHHS--SSCEEESTTC-------------SSHHHHHHHHHTT--CCSEEEECHHH---HHHHH---
T ss_pred CCCCcccHHHHHHHHhhC--CCCEEECCCC-------------CCHHHHHHHHHcC--CCCEEEecCCC---CCHHH---
Confidence 55443 222222222110 0011001111 1678888888743 45566666655 44555
Q ss_pred HHHHHHHHHHHhCCEEEEec
Q 015230 205 FLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li~De 224 (411)
..+|+++|+++|+.++.-.
T Consensus 280 -~~~i~~~A~~~gi~~~~~~ 298 (389)
T 3s5s_A 280 -ALDIAAVARAAGLGLMIGG 298 (389)
T ss_dssp -HHHHHHHHHHTTCEEEECC
T ss_pred -HHHHHHHHHHcCCeEEecC
Confidence 8899999999999988754
No 272
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=24.46 E-value=3.3e+02 Score=24.22 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHHHc-CCC-----CCCC-CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhccCCcEEEEEe
Q 015230 53 ADDQVLAALGETMKK-GTS-----FGAP-CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 125 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~-~~~-----~~~~-~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~~~~~~vi~~~ 125 (411)
.++++.+.+.+.++. +.. .+.. .+...+..+.+.+.++..-.+.+=..+.=..+.+++.++.+..-+ +..++
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~-i~~iE 229 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLD-IYWFE 229 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSC-EEEEE
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcC-CCEEE
Confidence 566777777777766 421 1211 233345556666777532234433333333555666665654433 44444
Q ss_pred CCcCC-CchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHH
Q 015230 126 GCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204 (411)
Q Consensus 126 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~ 204 (411)
.+++. .......+... ..+++..... ..+.+++++.++.. ..-+ +++-.+..|.++.
T Consensus 230 qP~~~~d~~~~~~l~~~--~~iPIa~dE~-------------~~~~~~~~~~i~~~--~~d~--v~~k~~~~GGit~--- 287 (372)
T 3tj4_A 230 EPLWYDDVTSHARLARN--TSIPIALGEQ-------------LYTVDAFRSFIDAG--AVAY--VQPDVTRLGGITE--- 287 (372)
T ss_dssp SCSCTTCHHHHHHHHHH--CSSCEEECTT-------------CCSHHHHHHHHHTT--CCSE--ECCCTTTTTHHHH---
T ss_pred CCCCchhHHHHHHHHhh--cCCCEEeCCC-------------ccCHHHHHHHHHcC--CCCE--EEeCccccCCHHH---
Confidence 44442 22222111111 0001100111 12688888888743 2223 4444444556666
Q ss_pred HHHHHHHHHHHhCCEEE
Q 015230 205 FLNAIRRITKENGALLI 221 (411)
Q Consensus 205 ~l~~i~~l~~~~~~~li 221 (411)
..++.++|+++|+.+.
T Consensus 288 -~~~ia~~A~~~gi~~~ 303 (372)
T 3tj4_A 288 -YIQVADLALAHRLPVV 303 (372)
T ss_dssp -HHHHHHHHHHTTCCBC
T ss_pred -HHHHHHHHHHcCCEEE
Confidence 8999999999999765
No 273
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=24.32 E-value=3.7e+02 Score=23.80 Aligned_cols=146 Identities=9% Similarity=0.045 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHHHcCCCC-----CCC-CHHHHHHHHHHHhhCCCCCEEEEeCChHHHHHHHHHHHHhc--cCCcEEEEE
Q 015230 53 ADDQVLAALGETMKKGTSF-----GAP-CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKF 124 (411)
Q Consensus 53 ~~~~v~~a~~~~l~~~~~~-----~~~-~~~~~~l~~~l~~~~~~~~~v~~~~~g~~a~~~al~~~~~~--~~~~~vi~~ 124 (411)
.+.++.+.+.+.++.+... +.. .+...+..+.+.+.+++. .+.+=.++.=....|++.++.+ .+- .+..+
T Consensus 143 ~~e~~~~~a~~~~~~G~~~iK~Kvg~~~~~~d~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~L~~~~~-~i~~i 220 (365)
T 3ik4_A 143 DEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQAAPTA-PLIVDGNCGYDVERALAFCAACKAESI-PMVLF 220 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCSSCHHHHHHHHHHHHHHSSSC-CEEEECTTCCCHHHHHHHHHHHHHTTC-CEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHHHHHhCCCC-eEEEECCCCCCHHHHHHHHHHHhhCCC-CceEE
Confidence 4556666676766664211 111 223344555666666543 4554444443455666666555 333 34444
Q ss_pred eCCcCC-CchhhhhhcCCCCcccCCCCCCCCCCCCCCceeecCCCCHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCH
Q 015230 125 EGCYHG-HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 203 (411)
Q Consensus 125 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~ 203 (411)
+.+.+. .......+...- .+++..... ..+.+++++.++.. ..-++.+.+.. |.+..
T Consensus 221 EeP~~~~d~~~~~~l~~~~--~ipIa~dE~-------------~~~~~~~~~~i~~~--a~d~v~ik~~~---GGit~-- 278 (365)
T 3ik4_A 221 EQPLPREDWAGMAQVTAQS--GFAVAADES-------------ARSAHDVLRIAREG--TASVINIKLMK---AGVAE-- 278 (365)
T ss_dssp ECCSCTTCHHHHHHHHHHS--SSCEEESTT-------------CSSHHHHHHHHHHT--CCSEEEECHHH---HCHHH--
T ss_pred ECCCCcccHHHHHHHHhhC--CCCEEECCC-------------CCCHHHHHHHHHhC--CCCEEEEcCCc---cCHHH--
Confidence 444432 222222221110 001100111 12678888888743 34566666655 44555
Q ss_pred HHHHHHHHHHHHhCCEEEEec
Q 015230 204 DFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De 224 (411)
..++.++|+++|+.++.=.
T Consensus 279 --~~~i~~~A~~~gi~~~~~~ 297 (365)
T 3ik4_A 279 --GLKMIAIAQAAGLGLMIGG 297 (365)
T ss_dssp --HHHHHHHHHHHTCEEEECC
T ss_pred --HHHHHHHHHHcCCeEEecC
Confidence 8899999999999987653
No 274
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=24.31 E-value=64 Score=21.67 Aligned_cols=47 Identities=11% Similarity=0.279 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEeccc
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~De~~ 226 (411)
..+..+.+++ ++..++++-..- +++....+..+|++++++++.-...
T Consensus 16 ~~~v~kai~~--gkaklViiA~D~--------~~~~~~~i~~lc~~~~Ip~~~v~sk 62 (82)
T 3v7e_A 16 TKQTVKALKR--GSVKEVVVAKDA--------DPILTSSVVSLAEDQGISVSMVESM 62 (82)
T ss_dssp HHHHHHHHTT--TCEEEEEEETTS--------CHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred HHHHHHHHHc--CCeeEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEECCH
Confidence 4556667764 356666664322 1255899999999999998865443
No 275
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=24.08 E-value=1e+02 Score=26.27 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCC---------CHHHHHHHHHHHHHhCCEEEE
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAP---------KPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~---------~~~~l~~i~~l~~~~~~~li~ 222 (411)
++.+++.+++...+.+=+++-|-...+|.... +.++++.|.++|+++++.+++
T Consensus 39 l~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~ 100 (281)
T 3p8k_A 39 ETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVA 100 (281)
T ss_dssp HHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEE
Confidence 45555556542222233555565555554321 256789999999999998764
No 276
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=23.94 E-value=95 Score=27.59 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHhCCEEEEecc
Q 015230 202 KPDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 202 ~~~~l~~i~~l~~~~~~~li~De~ 225 (411)
..+.++++.+.|.++|+.+|+|--
T Consensus 85 ~l~~ld~~v~~a~~~GiyVIlDlH 108 (345)
T 3jug_A 85 DIDTVREVIELAEQNKMVAVVEVH 108 (345)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEec
Confidence 355589999999999999999743
No 277
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=29.51 E-value=17 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 015230 206 LNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~~ 227 (411)
-.+|+++|++||++++.|..-+
T Consensus 29 A~~I~e~A~e~gVPi~e~~~LA 50 (114)
T 3b0z_B 29 ALRIREIGAEHRVPTLEAPPLA 50 (114)
Confidence 6789999999999999997664
No 278
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=23.67 E-value=2.6e+02 Score=25.16 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=32.5
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
+.+++++.++.. ..-+| ++-....|.+.. ..+|.++|+++|+.+..=
T Consensus 258 ~~~~~~~~i~~~--~~d~v--~ik~~~~GGit~----~~~ia~~A~~~gi~~~~h 304 (389)
T 3ozy_A 258 TRNAFNDYIRND--AIDVL--QADASRAGGITE----ALAISASAASAHLAWNPH 304 (389)
T ss_dssp HHHHHHHHHHTT--CCSEE--CCCTTTSSCHHH----HHHHHHHHHHTTCEECCC
T ss_pred CHHHHHHHHHcC--CCCEE--EeCccccCCHHH----HHHHHHHHHHcCCEEEec
Confidence 578888888743 23333 333344555666 889999999999988754
No 279
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=23.52 E-value=54 Score=28.37 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCEEEEeccc
Q 015230 206 LNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 206 l~~i~~l~~~~~~~li~De~~ 226 (411)
++++.++|+++|+.||.|--.
T Consensus 92 ~d~~~~~a~~~Gi~vil~~~~ 112 (351)
T 3vup_A 92 MKDLLDTAKKYNILVFPCLWN 112 (351)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEecc
Confidence 788999999999999988643
No 280
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=23.31 E-value=2.3e+02 Score=21.03 Aligned_cols=44 Identities=9% Similarity=0.218 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
.....+.+++ ++..++++-..- ++.+..+.|..+|++++++++.
T Consensus 46 ~~~v~kal~~--gkaklViiA~D~-------~~~~~~~~l~~lc~~~~IP~~~ 89 (135)
T 2aif_A 46 ANEATKALNR--GIAEIVLLAADA-------EPLEILLHLPLVCEDKNTPYVF 89 (135)
T ss_dssp HHHHHHHHHT--TCEEEEEEETTC-------SCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHc--CCCeEEEEecCC-------ChHHHHhHHHHHHHhcCCcEEE
Confidence 4666777774 356666654322 2233358999999999998763
No 281
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=23.27 E-value=56 Score=28.21 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhCCEEEEec
Q 015230 203 PDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De 224 (411)
.+.++++.+.|+++|+.+|+|=
T Consensus 64 ~~~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 64 PSDVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 4569999999999999999983
No 282
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Probab=23.07 E-value=1.7e+02 Score=25.54 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccc
Q 015230 203 PDFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~ 226 (411)
-+.++++.+.|+++|+.+|+|=-+
T Consensus 76 ~~~ld~~v~~a~~~Gi~vildlh~ 99 (341)
T 1vjz_A 76 FEKIDRVIFWGEKYGIHICISLHR 99 (341)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEecC
Confidence 455889999999999999999654
No 283
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=23.04 E-value=57 Score=27.93 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=30.9
Q ss_pred CHHHHHHHHHc-CCCcEEEEEEcccCCCCCccCCC---HHHHHHHHHHHHHhCCEEEEec
Q 015230 169 DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPK---PDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 169 d~~~l~~~~~~-~~~~~~~vi~~~~~~~~G~~~~~---~~~l~~i~~l~~~~~~~li~De 224 (411)
..++++..-++ .-..++.-+. +. ..++....+ -+.++++.+.|+++|+.+|+|-
T Consensus 40 ~~~d~~~l~~~~G~N~vR~~~~-~~-~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~vild~ 97 (291)
T 1egz_A 40 TADTVASLKKDWKSSIVRAAMG-VQ-ESGGYLQDPAGNKAKVERVVDAAIANDMYAIIGW 97 (291)
T ss_dssp SHHHHHHHHHTTCCCEEEEEEE-CS-STTSTTTCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEecc-cc-ccCCCcCCHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34555544313 2345555443 21 223333222 2457889999999999999984
No 284
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A
Probab=22.93 E-value=56 Score=29.79 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCEEEEecc
Q 015230 203 PDFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~ 225 (411)
.++++++.+.|+++|+.||+|=-
T Consensus 112 ~~~ld~vV~~a~~~Gl~VILDlH 134 (399)
T 3n9k_A 112 VQYLEKALGWARKNNIRVWIDLH 134 (399)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 46699999999999999999953
No 285
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A*
Probab=22.90 E-value=56 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 015230 204 DFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~ 225 (411)
+.++++.+.|+++|+.||+|=-
T Consensus 121 ~~ld~~v~~a~~~Gi~Vild~H 142 (359)
T 4hty_A 121 ELLDQVVAWNNELGIYTILDWH 142 (359)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEcC
Confidence 3478999999999999999843
No 286
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=22.61 E-value=61 Score=30.16 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhCCEEEEecccc
Q 015230 203 PDFLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~~ 227 (411)
++.++++.+-|+++|+-||+|=|.-
T Consensus 76 ~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 76 EDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccC
Confidence 4559999999999999999999884
No 287
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Probab=22.42 E-value=58 Score=29.12 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCEEEEeccc
Q 015230 204 DFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~~ 226 (411)
+.++++.+.|+++|+.||+|--.
T Consensus 90 ~~ld~~v~~a~~~Gi~VIld~H~ 112 (364)
T 1g01_A 90 DLVYEGIELAFEHDMYVIVDWHV 112 (364)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEecc
Confidence 34788899999999999998554
No 288
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=21.94 E-value=2.1e+02 Score=25.87 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=33.2
Q ss_pred CHHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEE
Q 015230 169 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 222 (411)
Q Consensus 169 d~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~ 222 (411)
+.+++++.++.. ++=++++-....|.+.. ..+|+++|+++|+.++.
T Consensus 262 ~~~~~~~~i~~~----a~d~v~~k~~~~GGit~----~~~ia~~A~~~gi~~~~ 307 (392)
T 3ddm_A 262 GVAAFETALAAR----SLRVMQPDLAKWGGFSG----CLPVARAVVAAGLRYCP 307 (392)
T ss_dssp SHHHHHHHHHHT----CEEEECCCTTTTTHHHH----HHHHHHHHHHTTCEECC
T ss_pred CHHHHHHHHHcC----CCCEEEeCcchhCCHHH----HHHHHHHHHHcCCEEEe
Confidence 688888888742 33345554455566666 89999999999998863
No 289
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=21.19 E-value=55 Score=28.16 Aligned_cols=23 Identities=9% Similarity=0.255 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHhCCEEEEec
Q 015230 202 KPDFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 202 ~~~~l~~i~~l~~~~~~~li~De 224 (411)
..+.++++.+.|+++|+.+|+|=
T Consensus 62 ~~~~ld~~v~~a~~~Gi~Vild~ 84 (294)
T 2whl_A 62 DIDTIREVIELAEQNKMVAVVEV 84 (294)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEe
Confidence 34569999999999999999984
No 290
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=20.91 E-value=1.5e+02 Score=22.10 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCcEEEEEEcccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 170 ~~~l~~~~~~~~~~~~~vi~~~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
.....+.+++ ++..+|++-..-+ +.+....|..+|++++++++.-
T Consensus 37 ~~~v~kai~~--gkakLViiA~D~~-------p~~~~~~l~~lc~~~~VP~~~v 81 (134)
T 2ale_A 37 ANEATKTLNR--GISEFIIMAADCE-------PIEILLHLPLLCEDKNVPYVFV 81 (134)
T ss_dssp HHHHHHHHHH--TCEEEEEEETTCS-------SGGGGTHHHHHHHHHTCCEEEE
T ss_pred chHHHHHHHh--CCCeEEEEeCCCC-------HHHHHHHHHHHHHhcCCCEEEE
Confidence 4555666664 3556666543221 2233778889999999986643
No 291
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=20.88 E-value=2.7e+02 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.122 Sum_probs=21.3
Q ss_pred ccCCCCCccCCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 191 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 191 ~~~~~~G~~~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
.+..+|+.+..-= --.++-+|+.|++++++=
T Consensus 219 ~V~anG~v~NKiG--T~~lAl~Ak~~~vPfyV~ 249 (338)
T 3a11_A 219 SITVNGAVINKIG--TALIALTAKEHRVWTMIA 249 (338)
T ss_dssp EECTTSCEEEETT--HHHHHHHHHHTTCEEEEE
T ss_pred EEecCCCEeeccc--HHHHHHHHHHcCCCEEEe
Confidence 3556666554322 457788999999998874
No 292
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A*
Probab=20.57 E-value=57 Score=28.25 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCEEEEec
Q 015230 204 DFLNAIRRITKENGALLIFDE 224 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De 224 (411)
+.++++.+.|+++|+.+|+|-
T Consensus 80 ~~ld~~v~~a~~~Gl~vild~ 100 (306)
T 2cks_A 80 DRMHQLIDMATARGLYVIVDW 100 (306)
T ss_dssp HHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 457889999999999999984
No 293
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.54 E-value=63 Score=24.82 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHhCCEEEEe
Q 015230 200 APKPDFLNAIRRITKENGALLIFD 223 (411)
Q Consensus 200 ~~~~~~l~~i~~l~~~~~~~li~D 223 (411)
.||+|....|.++|++.|+-+|+=
T Consensus 97 rPP~El~~~i~~lA~~v~adliI~ 120 (153)
T 2k4m_A 97 RPPAEIHSSLMRVADAVGARLIIK 120 (153)
T ss_dssp SCCTTTHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 455666899999999999988763
No 294
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=20.33 E-value=68 Score=29.32 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccc
Q 015230 203 PDFLNAIRRITKENGALLIFDEVM 226 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~ 226 (411)
.++++++.+.|+++|+.||+|--+
T Consensus 113 l~~ld~vv~~a~~~Gi~VilDlH~ 136 (408)
T 1h4p_A 113 ESYLDQAIGWARNNSLKVWVDLHG 136 (408)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
Confidence 455999999999999999999554
No 295
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Probab=20.29 E-value=69 Score=28.11 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 015230 204 DFLNAIRRITKENGALLIFDEV 225 (411)
Q Consensus 204 ~~l~~i~~l~~~~~~~li~De~ 225 (411)
+.++++.+.|+++|+.||+|-.
T Consensus 90 ~~ld~~i~~a~~~Gi~vild~~ 111 (344)
T 1qnr_A 90 QTLDYVVQSAEQHNLKLIIPFV 111 (344)
T ss_dssp HHHHHHHHHHHHHTCEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 4489999999999999999853
No 296
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=20.22 E-value=1.3e+02 Score=24.37 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhCCEEE
Q 015230 203 PDFLNAIRRITKENGALLI 221 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li 221 (411)
.++-+.+.++|+++++.++
T Consensus 160 ~~~~~~i~~~a~~~~v~~i 178 (232)
T 3dc7_A 160 SDYEAAIAQMTADYGVPHL 178 (232)
T ss_dssp HHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHcCCcEE
Confidence 6678889999999998764
No 297
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=20.05 E-value=51 Score=30.51 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEecccc
Q 015230 203 PDFLNAIRRITKENGALLIFDEVMT 227 (411)
Q Consensus 203 ~~~l~~i~~l~~~~~~~li~De~~~ 227 (411)
.+.++++.+-|+++|+-||.|-|+-
T Consensus 64 ~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 64 RAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeec
Confidence 3459999999999999999998874
Done!