RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015230
(411 letters)
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 790 bits (2044), Expect = 0.0
Identities = 299/411 (72%), Positives = 349/411 (84%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLR+ RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEV+TGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKF 256
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 786 bits (2032), Expect = 0.0
Identities = 221/412 (53%), Positives = 287/412 (69%), Gaps = 1/412 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVGSWGP I+GH + A
Sbjct: 18 IPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E +++G SFGAP +E +A++V VP+++MVR VNSGTEA M +RLAR +TGR++
Sbjct: 78 VIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TLT +ND++++ FE
Sbjct: 138 IIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQY 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
E+A II+EPV GN I P P+FL +R + E GALLI DEVMTGFR+A GAQ+Y+
Sbjct: 198 PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYY 257
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
V PDLT LGKIIGGG+PVGA+GGRR++M +AP GP+YQAGTLSGNP+AM AG L
Sbjct: 258 HVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTE 317
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKS 359
+ + G YE L ++T L G+ A K+ + ++ GMFG FFT V ++D
Sbjct: 318 ISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNC 377
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ +F RF+ MLEEGVY APS FEAGF SLAHS++DIQ T+ AA + ++
Sbjct: 378 DVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVNAARRCFAKL 429
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 785 bits (2031), Expect = 0.0
Identities = 196/412 (47%), Positives = 280/412 (67%), Gaps = 1/412 (0%)
Query: 1 MPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLA 59
+ GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++GP I GHA +
Sbjct: 19 IVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITK 78
Query: 60 ALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 119
A+ + G +G P LE A+M+ A+P+++ VRFVNSGTEA M +R+ARA+TGR
Sbjct: 79 AITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRT 138
Query: 120 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 179
+I+KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T PFN+V L+ +
Sbjct: 139 KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDK 198
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY 239
E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV+T FR YGGAQ+
Sbjct: 199 WGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDL 258
Query: 240 FGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK 299
GVTPDLT LGK+IGGGLP+GAYGG+++IME VAP GP YQAGT++GNP +M +GI L+
Sbjct: 259 LGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLE 318
Query: 300 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L++ G YE L+++ L +GI++ K I + G +FT + +++ A+ +
Sbjct: 319 VLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDT 378
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ F +F++ ML+EGV APS++EA F + H+ +DI++TI A + +
Sbjct: 379 DGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVGRAFAAL 430
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 783 bits (2025), Expect = 0.0
Identities = 238/411 (57%), Positives = 294/411 (71%), Gaps = 1/411 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ A
Sbjct: 18 MPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEA 77
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA M LRLAR +TGR +
Sbjct: 78 LKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNK 137
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T +ND+ +++ FE
Sbjct: 138 ILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQF 197
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEVMTGFR+AY Q Y+
Sbjct: 198 GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYY 257
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLT LGK+IGGGLPVGAYGG+ +IM VAP+GP+YQAGTLSGNPLAM AG TL +
Sbjct: 258 GVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ 317
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L P +Y + L G+ A +K G M G FFT+ PV N++ AK S
Sbjct: 318 LT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSN 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE + ++
Sbjct: 377 LQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAEIAMSKL 427
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 769 bits (1989), Expect = 0.0
Identities = 170/411 (41%), Positives = 243/411 (59%), Gaps = 2/411 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
PGGVNSPVRA +V P +G++++ +DG +D V ++GP I+GH +VL A
Sbjct: 23 FPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEA 80
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA M +RLAR +TGR+
Sbjct: 81 VEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDL 140
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF+GCYHG D LV AGS A G+P S GVP+ TL P+NDV ALE +F
Sbjct: 141 ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEY 200
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV+TGFRL GAQ YF
Sbjct: 201 GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYF 260
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
+ D+ LGKIIGGG PVGA G R++M ++ P G ++ AGT + +P+ M AG+ TLK
Sbjct: 261 NIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA 320
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L+E Y + L + + + G + M F V N A+K++
Sbjct: 321 LEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKAD 380
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ + + ML GV+ APS EA FT L H + ++ + L+ +
Sbjct: 381 KKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLRSSLKTV 431
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 767 bits (1984), Expect = 0.0
Identities = 223/409 (54%), Positives = 281/409 (68%), Gaps = 2/409 (0%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP I+GHA +VLA
Sbjct: 17 IPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLAR 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M LRLAR +TGR
Sbjct: 77 VRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPY 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +ND L + +
Sbjct: 137 IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRR 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMTGFRLA+GGA E
Sbjct: 197 GEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGATELL 255
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
G+ PDL TLGKI+GGGLP AY GRR+IME VAP GP+YQAGTLSGNPLAM AG+ TL+
Sbjct: 256 GLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLEL 315
Query: 301 LKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L+E PG Y YL + L G+ + K+ G + M FFTEGPV F+DA+++
Sbjct: 316 LEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRT 375
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 408
+T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K L
Sbjct: 376 DTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRKAL 424
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 716 bits (1850), Expect = 0.0
Identities = 130/419 (31%), Positives = 194/419 (46%), Gaps = 16/419 (3%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MP GV + RAF + +G H D+DGN Y+D+ G G ++GH +V AA
Sbjct: 25 MPDGVTADTRAFDPH---GLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAA 81
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ E + G + A LE AE +++A PSI +RF SGTE + LR+ARAFTGR
Sbjct: 82 IAEALSHGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRM 141
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
I++FEG YHG D +G G P +PGV T TL +D+ + +F N+
Sbjct: 142 ILRFEGHYHGWHD--FSASGYNSHFDGQP-APGVLPETTANTLLIRPDDIEGMREVFANH 198
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+IAA I EPV + G FL + ++ GAL I DEV++GFR+ G Q
Sbjct: 199 GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALL 258
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG--PMYQAGTLSGNPLAMTAGIHTL 298
V PDLT L K GGLP G GGR D+M +++ + GT +GNP+ A I +
Sbjct: 259 DVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF------FTEGPVYN 352
+ E +N + + + + G F T+
Sbjct: 319 DTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSIT 378
Query: 353 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ + + A ++ EGV + F S H + ++H +T ++VL ++
Sbjct: 379 RAEVARPDVKMIAAMRMALILEGVDIGGRG--SVFLSAQHEREHVEHLVTTFDRVLDRL 435
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 697 bits (1802), Expect = 0.0
Identities = 130/413 (31%), Positives = 198/413 (47%), Gaps = 22/413 (5%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGG + + P+V GS D+DG+ Y++++G + + GH+ + AA
Sbjct: 68 MPGGNTRSILFHRPF---PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAA 124
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
+ + G + E + AE V PSI++VRF NSGTEA + L A A TGR+
Sbjct: 125 VERALAVGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKT 184
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
++ F+G YHG L+ SG P A Y + +NDV +L + +
Sbjct: 185 VLAFDGGYHGG----LLNFASG----------HAPTNAPYHVVLGVYNDVEGTADLLKRH 230
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
+ AAI++EP++G G + + FL+ +R GALLIFDEVMT RL+ GGAQE
Sbjct: 231 GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQEML 289
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTL 298
G++ DLTTLGK IGGG+ GA+GGRRD+ME PA G AGT + N L M+AG L
Sbjct: 290 GISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAAL 349
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKK 358
++ L+ + + + + + F+ P+ + D +
Sbjct: 350 TQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRA 409
Query: 359 SETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
++ F+ ML +G+Y AP A +A + A + +
Sbjct: 410 ADQQLKELFFFHMLRKGIYLAPRGMYALSLEIADA--GRDAFAEALADFIGEQ 460
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 217 bits (556), Expect = 7e-67
Identities = 98/315 (31%), Positives = 146/315 (46%), Gaps = 47/315 (14%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
PI D + +WD++G EY+D+ G GH +V+AA+ +KK
Sbjct: 24 PIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY 83
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG- 130
LE L E++ VP + V +G+EA +++ARA T R I F G YHG
Sbjct: 84 EPYLE--LCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGR 141
Query: 131 ---------HADPFLVKAGSGVATLGLPDSPGV---PKGATYETLTAPFNDVSALENLFE 178
+P+ AG G V ++ + ++++ +F+
Sbjct: 142 THYTLALTGKVNPY--SAGMG------LMPGHVYRALYPCPLHGIS-EDDAIASIHRIFK 192
Query: 179 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 235
N+ +IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G G
Sbjct: 193 NDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA-----GR 247
Query: 236 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A E GV PDLTT K I GG P+ GR ++M+ VAP G GT +GNP+A
Sbjct: 248 TGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNPIA 304
Query: 291 MTAGIHTLKRLKEPG 305
A + LK ++
Sbjct: 305 CVAALEVLKVFEQEN 319
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 215 bits (551), Expect = 5e-66
Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 43/315 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 79 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----- 130
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 145
Query: 131 ----------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
P G + P + + ++ L+ F+
Sbjct: 146 ASATYSAGRKGVGPAA----VGSFAIPAPFTYRPRFERNGAY-----DYLAELDYAFDLI 196
Query: 181 K----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 235
G +AA I EP++ + G I ++ A++R + G LLI DE TG G
Sbjct: 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-----GR 251
Query: 236 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A + GVTPD+ TL K +G GLP+ A I E T +PL
Sbjct: 252 TGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLP 310
Query: 291 MTAGIHTLKRLKEPG 305
G+ L ++ G
Sbjct: 311 AAVGLRVLDVVQRDG 325
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 216 bits (552), Expect = 6e-66
Identities = 77/316 (24%), Positives = 125/316 (39%), Gaps = 41/316 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
P+ G + D+DGN ID +G++ +V+ A+ +
Sbjct: 44 PVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPY 103
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG- 130
+ + E + P + NSG+EA +++AR+ T + ++ F+ YHG
Sbjct: 104 EGYVA--VCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGR 161
Query: 131 ---------HADPFLVKAG---SGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLF 177
P+ G + L G T +
Sbjct: 162 TNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE--LAAKRAITVI 219
Query: 178 ENNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG 235
+ G +AA+++EP+ G GFI P FL + ++N + I DEV TGF
Sbjct: 220 DKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF-----A 274
Query: 236 ------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 289
A E+ G+ PDL K I GGLP+ A GR +IM+ +G GT GNP+
Sbjct: 275 RTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPI 331
Query: 290 AMTAGIHTLKRLKEPG 305
A A + T++ ++ G
Sbjct: 332 ACAAALATIETIESEG 347
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 215 bits (551), Expect = 7e-66
Identities = 86/315 (27%), Positives = 127/315 (40%), Gaps = 44/315 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 73
P+ G + D DGN +ID +G + V AA+ +
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
++ +AE++ + P + NSG EA +++AR TGR ++ F+ YHG
Sbjct: 107 EQYVQ--VAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGR 164
Query: 132 --------ADPFLVKAG-----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 178
A K+ V + G T E + E
Sbjct: 165 TNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA------ARRAISRIE 218
Query: 179 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 235
G +AAII+EP+ G GFI P P FL + ENG + I DEV TGF
Sbjct: 219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-----AR 273
Query: 236 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 290
A E+ G+ PD+ T+ K I GG+P+ A GR ++M+ V G GT GNP+
Sbjct: 274 TGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGG---LGGTYGGNPVT 330
Query: 291 MTAGIHTLKRLKEPG 305
A + L ++E
Sbjct: 331 CAAAVAALGVMRELD 345
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 209 bits (535), Expect = 1e-63
Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 52/317 (16%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----SFGA 73
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 74 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
+ LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAVT--LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG- 142
Query: 132 ADPFLVKAGSGVATLGL---------PDSPGV---PKGATYETLTAPFNDVSALENLFEN 179
V ++ + G+ P Y A+ L
Sbjct: 143 ---------CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND-PTGDAILTLLTE 192
Query: 180 NK-----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 234
G I A +EP+ + G I P FL I + +G L++ DEV G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL----- 247
Query: 235 G------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288
E+ G PD+ LGK +GGGLP+ A +I++ + TL GNP
Sbjct: 248 ARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF----AMQTLHGNP 303
Query: 289 LAMTAGIHTLKRLKEPG 305
++ AG+ L+ +
Sbjct: 304 ISAAAGLAVLETIDRDD 320
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 195 bits (498), Expect = 1e-58
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 35/323 (10%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ +
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86
Query: 74 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 132
P E + + +P + V VNSGTEA L+ ARA TGR++ + + G
Sbjct: 87 PMRGE--FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRT 144
Query: 133 DPFLVKAGSGVATLGLPDSPGV-------PKGATYETLTAPFNDVSALENLFENNKGEIA 185
+ +L + P + + P+NDV AL+ + A
Sbjct: 145 ----------MGSLSVTWEPKYREPFLPLVEPVEF----IPYNDVEALKRAVDEE---TA 187
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 244
A+ILEPV G G P+FL A R IT+E GALLI DE+ TG R A E+FG+ P
Sbjct: 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304
D+ TL K +GGG+P+G R ++ + G T GNPLAM AG+ ++ L+
Sbjct: 248 DILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERT 304
Query: 305 GTYEYLNKITGELTQGIIDAGKK 327
+E ++ + +
Sbjct: 305 RLWERAAELGPWFMEKLRAIPSP 327
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 190 bits (485), Expect = 1e-56
Identities = 86/327 (26%), Positives = 141/327 (43%), Gaps = 46/327 (14%)
Query: 10 RAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK- 67
+ + P+V D +G ++D+DGN+Y+D+ G +G + +V+ E M+K
Sbjct: 16 TSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL 75
Query: 68 ----GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRERI 121
F LE LA+ +++ P + F NSGTEA +++ + TGR+ I
Sbjct: 76 AHAAANDFYNIPQLE--LAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN-TGRKYI 132
Query: 122 IKFEGCYHGH--------ADPFLVKAG-----SGVATLGLPDSPGVPKGATY-----ETL 163
I F G +HG A + ++ GV + P+ P E +
Sbjct: 133 IAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV 192
Query: 164 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 223
+ + E+A I EP+ G G++ P +F ++++ K+ G LL+ D
Sbjct: 193 NRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD 252
Query: 224 EVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG 276
EV G G A E F PD+ TL K +GGG +P+GA R+D+
Sbjct: 253 EVQMGL-----GRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLDF-----K 302
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKE 303
P + T GN LA G + +K+
Sbjct: 303 PGMHSNTFGGNALACAIGSKVIDIVKD 329
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 182 bits (464), Expect = 1e-53
Identities = 84/336 (25%), Positives = 139/336 (41%), Gaps = 56/336 (16%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +F +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 126
L E ++ + + EMV +N+G EA ++ AR + R II E
Sbjct: 79 QLGP--WYEK-VAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCED 135
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 181
+HG + + + + +G + + P+ D+ AL+ N
Sbjct: 136 NFHGRT----------MGAVSMSSNEEYKRG--FGPMLPGIIVIPYGDLEALKAAITPN- 182
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 236
AA ILEP+ G +G P FL + K+ L + DE+ TG A
Sbjct: 183 --TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC--- 237
Query: 237 QEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 291
++ VTPD+ LGK +GGG+ P+ RDI+ + P G T GNPLA
Sbjct: 238 -DWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-------GSHGSTFGGNPLAC 289
Query: 292 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 327
I L+ L+E E ++ +L + +
Sbjct: 290 AVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 182 bits (464), Expect = 3e-53
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 55/315 (17%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA 73
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +F
Sbjct: 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFE 125
L E E I+ + + V +N+G EA +LAR + + +I+
Sbjct: 118 NVLGE--YEEY-ITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAA 174
Query: 126 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENN 180
G + G ++ + P G + P+ND+ ALE ++
Sbjct: 175 GNFWGRT----------LSAISSSTDPTSYDG--FGPFMPGFDIIPYNDLPALERALQDP 222
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGG 235
+AA ++EP+ G +G + P P +L +R + + L I DE+ TG LA
Sbjct: 223 N--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV-- 278
Query: 236 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 290
+Y V PD+ LGK + GGL PV A DIM + P G T GNPL
Sbjct: 279 --DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-------GEHGSTYGGNPLG 329
Query: 291 MTAGIHTLKRLKEPG 305
I L+ L+E
Sbjct: 330 CRVAIAALEVLEEEN 344
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 181 bits (461), Expect = 7e-53
Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 55/314 (17%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 74
P+V KG ++D++ Y D++ ++ GH +L A+ K T +F +
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 126
L ++ + + V +N+G EA +L R + +I+ +
Sbjct: 108 PLGI--CERY-LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 164
Query: 127 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 181
+ G + + + + P++D+ ALE ++
Sbjct: 165 NFSGRT----------LGCISASTTKKCTSN--FGPFAPQFSKVPYDDLEALEEELKDP- 211
Query: 182 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 236
+ A I+EP+ G +G I P ++L + I K+ L + DEV TG L
Sbjct: 212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--- 267
Query: 237 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 291
++ V PD+ LGK + GG P+ A DIM ++ P G T GNPLA
Sbjct: 268 -HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAA 319
Query: 292 TAGIHTLKRLKEPG 305
+ + L L
Sbjct: 320 SICVEALNVLINEK 333
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 177 bits (451), Expect = 6e-52
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 51/309 (16%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K S +
Sbjct: 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYEN 69
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 128
P E LA ++ + V F NSGTE+ ++LAR + + + I FE +
Sbjct: 70 PWQEE--LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSF 127
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG +L P KG +E L A ND+ ++ L +
Sbjct: 128 HGRT----------YGSLSATGQPKFHKG--FEPLVPGFSYAKLNDIDSVYKLLDEE--- 172
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 238
A II+E + G G DFL+ ++ I KE LLI DEV TG R AY +
Sbjct: 173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY----Q 228
Query: 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 294
+F + PD+ L K +GGG+P+GA + + G T GNPLA AG
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGA-------ILAREEVAQSFTPGSHGSTFGGNPLACRAG 281
Query: 295 IHTLKRLKE 303
+ +++
Sbjct: 282 TVVVDEVEK 290
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 176 bits (449), Expect = 2e-51
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 45/332 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K S F
Sbjct: 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWN 81
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 128
+E LAE++ V F N+GTEA +++AR + + RI+ +
Sbjct: 82 RPQME--LAELLSKNTFG-GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG + +L P K +E L FN+V L +
Sbjct: 139 HGRT----------LGSLTATGQPKYQKP--FEPLVPGFEYFEFNNVEDLRRKMSED--- 183
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
+ A+ LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV
Sbjct: 184 VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV 243
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 298
PD+ T K +GGG+P+GA +V + + G T GNPLA AG+ +
Sbjct: 244 VPDVLTTAKGLGGGVPIGAV--------IVNERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 330
K L + G E + + L + + + ++
Sbjct: 296 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDV 327
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 176 bits (448), Expect = 2e-51
Identities = 87/329 (26%), Positives = 137/329 (41%), Gaps = 43/329 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 73
IV + +G +++D +Y+D+ G +G+ + A + + K TS +
Sbjct: 18 FDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYN 77
Query: 74 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 128
+ A+ + A E V F NSGTE+ G ++ AR + + I F+ +
Sbjct: 78 ENIAA--AAKNLAKASAL-ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSF 134
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG + L L + K ++ L A +ND+S++E L
Sbjct: 135 HGRT----------LGALSLTANEKYQKP--FKPLISGVKFAKYNDISSVEKLVNEK--- 179
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
AIILE V G G DF A+R++ E LLI DE+ G R A E+ +
Sbjct: 180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI 239
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 298
PD+ T K +G GL VGA+ + + A +AG T GNPL
Sbjct: 240 LPDIMTSAKALGCGLSVGAFVINQKV------ASNSLEAGDHGSTYGGNPLVCAGVNAVF 293
Query: 299 KRLKEPGTYEYLNKITGELTQGIIDAGKK 327
+ KE E +NK+T L Q + + +
Sbjct: 294 EIFKEEKILENVNKLTPYLEQSLDELINE 322
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 176 bits (449), Expect = 3e-51
Identities = 91/322 (28%), Positives = 137/322 (42%), Gaps = 45/322 (13%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 74
+ KGS +WD G EYID+ G +GH ++ AL + TS F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 128
L L +I A + E V F+NSGTEA +LAR + + +II F +
Sbjct: 100 PALR--LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAF 156
Query: 129 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 183
HG + + T+ + P G + PFND+ A++ + +++
Sbjct: 157 HGRS----------LFTVSVGGQPKYSDG--FGPKPADIIHVPFNDLHAVKAVMDDH--- 201
Query: 184 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
A+++EP+ G G A P+FL +R + E+ ALL+FDEV G R A ++GV
Sbjct: 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV 261
Query: 243 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 298
TPD+ T K +GGG PV A M + G T GNPLA
Sbjct: 262 TPDILTSAKALGGGFPVSA-------MLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAF 314
Query: 299 KRLKEPGTYEYLNKITGELTQG 320
+ P + ++ + Q
Sbjct: 315 DIINTPEVLQGIHTKRQQFVQH 336
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 166 bits (423), Expect = 3e-47
Identities = 65/325 (20%), Positives = 103/325 (31%), Gaps = 46/325 (14%)
Query: 19 PIVFDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLL 77
+ GS++ D I G Y+D + +G ++ + +
Sbjct: 36 VLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95
Query: 78 ENV-------LAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAFTGRE--------- 119
+V E + + FV G A L+ A + R
Sbjct: 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPA 155
Query: 120 ---RIIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-AP 166
+++ G +HG + P + A D+P + G +
Sbjct: 156 LGTQVLHLRGAFHGRSGYTLSLTNTKPTI-TARFPKFDWPRIDAPYMRPGLDEPAMAALE 214
Query: 167 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 226
+ FE +IA + EP+ G G +P+F A+R + E ALLIFDEV
Sbjct: 215 AEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQ 274
Query: 227 TGF----RL-AYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 280
TG AY + V PD+ GK G+ G A P
Sbjct: 275 TGCGLTGTAWAY----QQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADN---VFAVPSRL 327
Query: 281 AGTLSGNPLAMTAGIHTLKRLKEPG 305
T GN M L+ ++ G
Sbjct: 328 NSTWGGNLTDMVRARRILEVIEAEG 352
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 166 bits (422), Expect = 7e-47
Identities = 58/344 (16%), Positives = 107/344 (31%), Gaps = 71/344 (20%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 76
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 46 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105
Query: 77 -----LENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER---------- 120
L E ++S P + + + G+ + + + +
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 121 ----------------IIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVP 155
I+ F G +HG H+ K + P +
Sbjct: 166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPIAPFPRLK 224
Query: 156 KGATYETLTAPFNDVSALENL------FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 209
+ LE + + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 210 RRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVT--PDLTTLGKIIGGGLPVGA 261
R I++++G + DEV TG G A E++G+ D+ T K + G
Sbjct: 285 RDISRKHGCAFLVDEVQTGG-----GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339
Query: 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
E P P T G+P + +K
Sbjct: 340 --------EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRED 375
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 157 bits (400), Expect = 8e-44
Identities = 77/348 (22%), Positives = 134/348 (38%), Gaps = 42/348 (12%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGAP 74
V +G + DI G Y+D + G+ ++ A + ++ S
Sbjct: 32 TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHE 91
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 128
++ LAE + + ++ F NSG+EA ++AR + R + + Y
Sbjct: 92 PAIK--LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGY 149
Query: 129 HG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 172
HG +PF SG + PD +P V
Sbjct: 150 HGNTMATMAATGQAQRRYQYEPFA----SGFLHVTPPDCYRMPGIERENIYDVEC--VKE 203
Query: 173 LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R 230
++ + E IAA I+EP++ G + D++ A+ +++GALLI DEV+ GF R
Sbjct: 204 VDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263
Query: 231 LAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP--MYQAG-TLSG 286
+ V PD+ T+ K I LP+ A +R+I E G ++ T G
Sbjct: 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGG 323
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334
NP A + L+ ++ E ++ L + + + H + G
Sbjct: 324 NPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE--IGEHPLVG 369
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 151 bits (383), Expect = 2e-41
Identities = 93/450 (20%), Positives = 156/450 (34%), Gaps = 90/450 (20%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P++ +S G + DI+G EY D S + GH ++ A+ + + K +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK---------IA 77
Query: 79 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRE 119
+ LAE +I P + V + +SG EA L++A + ++
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 120 RIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETL 163
+ I + YHG H P + +P G E
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM----FESYKAPIPYVYRSESGDPDECR 193
Query: 164 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIF 222
+ L L E + EIAA+ +E +V G SG I +L +R + L+I
Sbjct: 194 DQ---CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250
Query: 223 DEVMTGF-RLAYGG---AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP 277
DEV TGF R G A E+ V PDL GK I GG LP+ DI + A
Sbjct: 251 DEVATGFGRT---GKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK--AFYDD 305
Query: 278 MYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 331
T +GN L + L + E + + + +L + D
Sbjct: 306 YENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDL---HALP 362
Query: 332 ICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---------YFAPS 381
G G ++ ++ + M E G+ F P
Sbjct: 363 HVGDIRQLGFMCGAELVRSK-ETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLP- 420
Query: 382 QFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
LA +++++ + ++ + ++
Sbjct: 421 -------PLASTAEELSEMVAIMKQAIHEV 443
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 148 bits (377), Expect = 8e-41
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 51/324 (15%)
Query: 17 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK-----GT 69
V +G ++D G Y+D GS G + IGH +V + + G+
Sbjct: 10 KPYPVAVRGEGVFLYDDAGRRYLD--GSSGALVANIGHGRAEVGERMAAQAARLPFVHGS 67
Query: 70 SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERII 122
F + L E A + V V+ G+EA ++LAR + GR ++I
Sbjct: 68 QFSSDVLEE--YAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125
Query: 123 KFEGCYHGHADPFLVKAGSGVATLGL---------------PDSPGVPKGATYETLTAPF 167
YHG + + +L P++ A
Sbjct: 126 TRVPSYHG----------ASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA-- 173
Query: 168 NDVSALENLFENNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEV 225
D L L E E +AA + EPVVG S +AP P + +R I E G + I DEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 226 MTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG 282
M+G R + + GVTPD+ LGK + G P+ + E V + G
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 283 -TLSGNPLAMTAGIHTLKRLKEPG 305
T +G+P+++ AG+ L ++
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVERED 317
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 143 bits (364), Expect = 9e-39
Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 55/369 (14%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
+ + + +G +WD +G + ID +G+ ++ A+ K
Sbjct: 22 THMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAK 81
Query: 67 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 115
G + LA+M+I P + V F SG++A ++L +
Sbjct: 82 NLAYYHAYVGHGTEASIT--LAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVL 139
Query: 116 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGVPK-GATYE 161
+++II YHG SGV T L V A Y
Sbjct: 140 GRPEKKKIISRWRGYHG----------SGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYY 189
Query: 162 TLTAPFND---------VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRR 211
+ LE + E IAA I EP++G G + P + I+
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249
Query: 212 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 269
+ K+ LL+ DEV+TGF RL +++G+ PDL T+ K + P+ +
Sbjct: 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVW 309
Query: 270 EMVA----PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 325
+++ G + T S +P+ + AG+ L+ + E + + A
Sbjct: 310 QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKA- 368
Query: 326 KKAGHAICG 334
GH G
Sbjct: 369 -VGGHKNVG 376
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 143 bits (362), Expect = 2e-38
Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 42/334 (12%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
+ + G V +G ++WD +GN+ ID + +G+ A M+
Sbjct: 23 TDTASLNQAG--ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQME 80
Query: 67 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 115
+ P ++E L+ ++ P + V + NSG+E+ ++R+ R +
Sbjct: 81 ELPFYNTFFKTTHPAVVE--LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQ 138
Query: 116 --TGRERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKG 157
++ +I YHG H D + G+A + P K
Sbjct: 139 GKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI----PGMAHIEQPWWYKHGKD 194
Query: 158 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 216
T + LE + +AA + EP+ G G I P + I RI ++
Sbjct: 195 MTPDEFGVVA--ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY 252
Query: 217 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 274
LL+ DEV+ GF R ++FG PDL T K + G LP+GA + + E +
Sbjct: 253 DVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIA 312
Query: 275 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 308
G T SG+P+ + L++ G +
Sbjct: 313 GGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 142 bits (361), Expect = 2e-38
Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 54/356 (15%)
Query: 8 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 67
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 68 ---GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 115
F P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 116 TGRERIIKFEGCYHGHADPFLVKAGSGVATL---GLP----------------DSPGVPK 156
+ ++I YHG +A G+ +
Sbjct: 140 ATKTKMIGRARGYHG----------VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189
Query: 157 GATYETLTAPFNDVSA--LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRIT 213
A + A L L E + IAA+ +EP+ G++G + P +L R I
Sbjct: 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC 249
Query: 214 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEM 271
++ LL+FDEV+TGF R + FGVTPDL + K + G +P+GA +I +
Sbjct: 250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQT 309
Query: 272 VAPAGPMYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
A S +P+A AG+ L L++ + + ++ + +
Sbjct: 310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL 365
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 141 bits (357), Expect = 1e-37
Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 36/335 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 72
+V +G ++ D++G Y+D + G ++ A ++
Sbjct: 44 TVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRM 103
Query: 73 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 125
+ + L+E ++ P V + NSG+EA ++++ + +I+
Sbjct: 104 SDQTVM--LSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRW 161
Query: 126 GCYHGHADPFLVKAGSGVA---TLGLP-------DSPGVPKGATYETLTAPFND--VSAL 173
YHG + + +G GLP P + F L
Sbjct: 162 NAYHG--VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 219
Query: 174 ENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 231
E + + IA EPV+G G I P + AI I ++ +I DEV+ GF R
Sbjct: 220 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 279
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLSG 286
+ TPD K + G P+GA ++ + + T SG
Sbjct: 280 GNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG 339
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
+P+ + + + G E + ++ + +
Sbjct: 340 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL 374
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 139 bits (354), Expect = 2e-37
Identities = 87/339 (25%), Positives = 138/339 (40%), Gaps = 53/339 (15%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
S +G + DG +D + SW AI G+ Q+ AA+ + +
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA---------MS 76
Query: 79 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF-----TG 117
+V L +++ P +E V +SG+ A V +++A +
Sbjct: 77 HVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVA---VEVAMKMALQYWQAKGEA 133
Query: 118 RERIIKFEGCYHGHADPFLVKAGSGVATL-------GLPDSPGVPKGATYETLTAPFNDV 170
R+R + F YHG D F + LP++ P + D+
Sbjct: 134 RQRFLTFRNGYHG--DTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191
Query: 171 SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF
Sbjct: 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251
Query: 230 -RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPMYQAG 282
R G A E+ + PD+ LGK + GG + + A R++ E AG
Sbjct: 252 GRT---GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 283 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
T GNPLA A +L L+ + + I +L + +
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 138 bits (351), Expect = 6e-37
Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 65/345 (18%)
Query: 19 PIVFDSVKGSH---MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 75
P+V + G+ + D E +D + SW AI GH + AL ++
Sbjct: 55 PVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------- 106
Query: 76 LLENV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF---- 115
+ +V LA++++ P ++ V F +SG+ + V ++A +
Sbjct: 107 -MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVS---VEVAAKMALQYWRGR 162
Query: 116 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF---- 167
G+ R++ + G YHG D F ++ P + + AP
Sbjct: 163 GLPGKRRLMTWRGGYHG--DTF------LAMSICDPHGGMHSLWTDVLAAQVFAPQVPRD 214
Query: 168 ---NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFD 223
+A E + GE+AA+++EPVV G G P +L+ +R I + LLIFD
Sbjct: 215 YDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD 274
Query: 224 EVMTGF-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAG 276
E+ TGF R G A ++ GV+PD+ +GK + GG L + A D+ AG
Sbjct: 275 EIATGFGRT---GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAG 331
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
+ T NPLA + +++ L + ++ LT G+
Sbjct: 332 ALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL 376
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 136 bits (346), Expect = 4e-36
Identities = 74/359 (20%), Positives = 124/359 (34%), Gaps = 44/359 (12%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
S A G V +G + D +G E +D + IG+ D++ M+
Sbjct: 28 SANNALGEEG--TRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMR 85
Query: 67 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 115
+ + LA+ + P + V F G+EA +R+ R +
Sbjct: 86 ELPYYNTFFKTTHVPAIA--LAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNK 143
Query: 116 --TGRERIIKFEGCYHG--------------HAD-PFLVKAGSGVATLGLPDSPGVPKGA 158
+ II + YHG HA + V + P+
Sbjct: 144 GQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI----PDVHHINQPNWWAEGGDM 199
Query: 159 TYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 217
E LE +AA I EPV G G I + I+RI +
Sbjct: 200 DPEEFGLAR--ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYD 257
Query: 218 ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA 275
LLI DEV+ GF R + G+ P + T+ K + G P+G ++ ++
Sbjct: 258 ILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-K 316
Query: 276 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 334
T SG+P+A + L+ L+E +++ + + +A H + G
Sbjct: 317 DEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEA--LTDHPLVG 373
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 133 bits (337), Expect = 4e-34
Identities = 78/488 (15%), Positives = 139/488 (28%), Gaps = 111/488 (22%)
Query: 19 PIVFDSVKGSHMWDID------GNEYIDYVGSWGPAIIGHADDQVLAA--------LGET 64
V DS G + ++ D SW LA G
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416
Query: 65 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAF------- 115
M L+ AE+++ V R F ++G+ A L++A
Sbjct: 417 MFPE--NVYEPALK--CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNF 472
Query: 116 --------TGRERIIKFEGCYHG----------------------------HADPFLVKA 139
++I G YHG DP V
Sbjct: 473 CEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFL 532
Query: 140 GSGVATLGLPD--SPGVPKGATYETLTAPFND-----------VSALENLFE-----NNK 181
+G + LP+ S P+ T+ + F+ + L +
Sbjct: 533 SNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS 592
Query: 182 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 239
+ A+I+EPV+ G G P F + + +IFDEV TGF RL E
Sbjct: 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTEL 652
Query: 240 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQAGTLSGNPLAMTAGI 295
G PD+ K++ GG +P+ + + + + + S + +
Sbjct: 653 LGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 712
Query: 296 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGGY-ISGMFGFFFTEGPVYN 352
++ K+P T + L + + + + H+ + G +
Sbjct: 713 KAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA-- 770
Query: 353 FEDAKKSETTKFARFYRGMLEEGV---------YFAPSQFEAGFTSLAHSSDDIQHTITA 403
+ + E+G+ Y S + + +T
Sbjct: 771 --SNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMC--------GPCTSPEICRRLLTK 820
Query: 404 AEKVLRQI 411
K L +
Sbjct: 821 LYKRLGEF 828
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 130 bits (329), Expect = 8e-34
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 57/343 (16%)
Query: 7 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 66
+ V +G ++ DG ID A +G+ +++ A+
Sbjct: 27 QEMAKLGKSA--QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAM 84
Query: 67 K-----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----- 115
LAE + + P + + F G+ A LR + +
Sbjct: 85 VLPYASPWYMATSPAAR--LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG 142
Query: 116 -TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGV--------- 154
++RII YHG S T +
Sbjct: 143 RPQKKRIIVRYDGYHG----------STALTAACTGRTGNWPNFDIAQDRISFLSSPNPR 192
Query: 155 -PKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 212
+ E V E+ E+ + IAA + EP++ + G I P + + I
Sbjct: 193 HAGNRSQEAFLDDL--VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250
Query: 213 TKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 269
+++ L I DEV+TGF R + +++ FGV PD+ T K + G +P+G ++
Sbjct: 251 CEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVL 310
Query: 270 EMVA---PAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 308
++ G + G T S P+A A + ++ ++ G +
Sbjct: 311 ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVD 353
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 49.5 bits (119), Expect = 1e-06
Identities = 53/270 (19%), Positives = 87/270 (32%), Gaps = 60/270 (22%)
Query: 168 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 225
N++ L L + I + + G I L + I E A ++ D+
Sbjct: 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212
Query: 226 MTGFRLAYG-GAQEYFGVTPD----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGP-- 277
G G G +FG+ D + T K + +G + G D+++ +
Sbjct: 213 SLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSV 269
Query: 278 MYQAGTLSGNPLAMTAGIHTLKRLK----EPGTYEYLNKITGELTQGIIDAG---KKAGH 330
M+ A A A TLK L+ EP E L K T ++D G
Sbjct: 270 MFSASM----TPASVAS--TLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GF 387
I P++ +K T + + ++GV+ P A
Sbjct: 324 PIL---------------PIF-IRSNEK--TFWVTK---MLQDDGVFVNPVVSPAVPAEE 362
Query: 388 T------SLAHSSDDIQHTITAAEKVLRQI 411
+ H+ D I I KV +Q
Sbjct: 363 SLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 49.6 bits (119), Expect = 1e-06
Identities = 58/269 (21%), Positives = 81/269 (30%), Gaps = 57/269 (21%)
Query: 168 NDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 225
NDV+ L L + +I E V G P + I I +E GAL DEV
Sbjct: 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH 217
Query: 226 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 276
G YG G E G+ + TL K G G Y +++ V
Sbjct: 218 AVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYA 271
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI---TGELTQGIIDAG---KKAGH 330
P + T S P ++ LK + + L + G G
Sbjct: 272 PGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS 330
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG- 386
I PV D T + + + GVY P F G
Sbjct: 331 HIV---------------PVV-IGDPVH--TKAVSD--MLLSDYGVYVQPINFPTVPRGT 370
Query: 387 ----FT-SLAHSSDDIQHTITAAEKVLRQ 410
FT S H I + A + + +
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 49.4 bits (119), Expect = 1e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 226
NDV+ L L + ++ E V G AP L I+++T+++ L+ D+
Sbjct: 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG 208
Query: 227 TGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 271
TG G G+ V P+L T GK G GA + +
Sbjct: 209 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADY 254
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 49.5 bits (119), Expect = 1e-06
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 58/270 (21%)
Query: 168 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 225
N V L+ L K ++LE V G IAP L + + K++GA+++ DE
Sbjct: 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233
Query: 226 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 276
GF +G G E G+ + T K +G VG + E V A
Sbjct: 234 SMGF---FGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT---VGGFVVSNHPKFEAVRLAC 287
Query: 277 PMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG-----KKAGH 330
Y S P + ++++L E L L G+ G +
Sbjct: 288 RPYIFTA-SLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---G- 386
AI V ED +++ A ++ +L+ G+Y ++ A G
Sbjct: 347 AIV---------------AVM-LEDQEQA-----AMMWQALLDGGLYVNMARPPATPAGT 385
Query: 387 ----FT-SLAHSSDDIQHTITAAEKVLRQI 411
+ H+ IQ + + R +
Sbjct: 386 FLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 49.2 bits (118), Expect = 1e-06
Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 50/263 (19%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 226
N+ L L + + I I+++ + G IAP L + I+KE G L+ DE
Sbjct: 173 NNCDHLRMLIQRHGPGI--IVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHS 226
Query: 227 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 280
G G G G+T ++ +L K ++ V
Sbjct: 227 LGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY---RAGAIWCNNEVNRCVPFISYPAI 283
Query: 281 AGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI 337
+ + P TL+ ++ ++L+++ +L G+ G I
Sbjct: 284 FSS-TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQII---- 338
Query: 338 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG-----FT- 388
+ D + T K + + GV+ + +
Sbjct: 339 -----------GLE-TGDERN--TEKVRDY---LESNGVFGSVFCRPATSKNKNIIRLSL 381
Query: 389 SLAHSSDDIQHTITAAEKVLRQI 411
+ + + I I +
Sbjct: 382 NSDVNDEQIAKIIEVCSDAVNYG 404
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 46.4 bits (111), Expect = 1e-05
Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 56/270 (20%)
Query: 168 NDVSALENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIF 222
N + LE + + A L + + G IA L +I + + AL++
Sbjct: 157 NAMGDLEAKLKEADEKGARFKL--IATDGVFSMDGIIAD----LKSICDLADKYNALVMV 210
Query: 223 DEV-MTGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPA 275
D+ GF G G EY GV + TLGK +GG G Y G ++I+E +
Sbjct: 211 DDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA--SGGYTSGHKEIIEWLRNR 268
Query: 276 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY--EYLNKITGELTQGIIDAG---KKAGH 330
Y + P+ + + L+ LK G + L + + G+ G H
Sbjct: 269 SRPYLFSN-TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH 327
Query: 331 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAG- 386
I PV DA+ T A +L+EG+Y F+ G
Sbjct: 328 PII---------------PVM-LGDAQL--ATNMADH---LLQEGIYVVGFSYPVVPMGK 366
Query: 387 ----FT-SLAHSSDDIQHTITAAEKVLRQI 411
S H+ + I A +V +++
Sbjct: 367 ARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 89/247 (36%)
Query: 160 YETLTAPFNDV--SALENLFENNKGEIAAIILE-PVVGNSGFIAPKPDFLNAIRRITKEN 216
Y+T A DV A + + I I++ PV F K +RI +EN
Sbjct: 1636 YKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG------KRI-REN 1687
Query: 217 GALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 275
+ +IF+ ++ G ++ F + T+
Sbjct: 1688 YSAMIFETIVDGKLKT----EKIFKEINEHSTSY--TFRS------------------EK 1723
Query: 276 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGH---- 330
G + T P + LK +G+I A AGH
Sbjct: 1724 GLLSA--TQFTQPALTLMEKAAFEDLKS---------------KGLIPADATFAGHSLGE 1766
Query: 331 --AIC--GGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR--FYRGMLEEGVYFAPSQFE 384
A+ +S E FYRGM + A + E
Sbjct: 1767 YAALASLADVMS--------------IESL--------VEVVFYRGMT---MQVAVPRDE 1801
Query: 385 AGFTSLA 391
G ++
Sbjct: 1802 LGRSNYG 1808
Score = 37.7 bits (87), Expect = 0.008
Identities = 61/324 (18%), Positives = 89/324 (27%), Gaps = 143/324 (44%)
Query: 10 RAFKSVGGQP-IVFDSVKG-----SHMWDIDG------NEYIDYVGSWGPAIIGHADDQV 57
A+ + P I+ DS++ S M I +Y++ S PA QV
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-----GKQV 366
Query: 58 LAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTG 117
+L +N +V+S P + + LR A+A +G
Sbjct: 367 EISL---------VNGA---KN----LVVSG-PPQSLYGLNLT--------LRKAKAPSG 401
Query: 118 --------RERIIKFEGC-------YHGHADPFLVKAGSGVAT-------------LGLP 149
ER +KF +H LV A + + +P
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 150 DSPGVPKGATYETLTAPFNDV-----SALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 204
V Y+T +D+ S E + + II PV
Sbjct: 459 ----V-----YDTFDG--SDLRVLSGSISERIVD-------CIIRLPV-----------K 489
Query: 205 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 264
+ + A I D F G G L L G G
Sbjct: 490 WETTTQ-----FKATHILD-----F-----GP----GGASGLGVLTHRNKDGT------G 524
Query: 265 RRDIMEMVAPAGPMYQAGTLSGNP 288
R I AGTL NP
Sbjct: 525 VRVI-----------VAGTLDINP 537
Score = 35.4 bits (81), Expect = 0.044
Identities = 45/253 (17%), Positives = 64/253 (25%), Gaps = 95/253 (37%)
Query: 132 ADPFLVKAGSGVATLGLP------DSP-------GVPKG----ATYETLT-APFNDVSA- 172
AD T G ++P G KG Y + D
Sbjct: 1649 ADNHFKD------TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 173 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN--------------AIRRITKENGA 218
E +F+ + F + K L+ A K G
Sbjct: 1703 TEKIFKEINEHSTSYT---------FRSEK-GLLSATQFTQPALTLMEKAAFEDLKSKG- 1751
Query: 219 LLIFDEVMTGFRLAYGGAQEYF------GVTP--DLTTL----GKIIGGGLPVGAYGGRR 266
L+ D G L G EY V L + G + +P G R
Sbjct: 1752 LIPADATFAGHSL---G--EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG--R 1804
Query: 267 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL--------- 317
M+A NP + A + + L+ E + K TG L
Sbjct: 1805 SNYGMIA------------INPGRVAASF-SQEALQY--VVERVGKRTGWLVEIVNYNVE 1849
Query: 318 -TQGIIDAGKKAG 329
Q + AG
Sbjct: 1850 NQQYVA-AGDLRA 1861
Score = 33.1 bits (75), Expect = 0.19
Identities = 47/278 (16%), Positives = 74/278 (26%), Gaps = 95/278 (34%)
Query: 37 EYIDYVGSWG-PAIIGHADDQVLAALGETMKKGTSFGAPCLLEN----VLAEMVISAVPS 91
+++ YV S P+ +G D + L E F L N + A+++ +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTE-------FENCYLEGNDIHALAAKLLQENDTT 115
Query: 92 IEMVRFVNSGTEACMGVLR---LARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL-- 146
+ + + ++ AR R G G A L
Sbjct: 116 LVKTKEL----------IKNYITARIMAKRPF-------DKKSNSALFRAVGEGNAQLVA 158
Query: 147 --GLPDSPGVPKG-------------ATYETLTAPFNDVSA--LENLFENN--------K 181
G G +G TY L SA L L +
Sbjct: 159 IFG-----G--QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 182 G-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGAL---LIFDEVMTGFRLAYGGAQ 237
G I + P P D+L +I + LI + Y
Sbjct: 212 GLNILEWLENPSN------TPDKDYLLSI--------PISCPLIG---VIQL-AHYVVTA 253
Query: 238 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 275
+ G TP L + G ++ VA A
Sbjct: 254 KLLGFTPG--ELRSYLKGATGHSQ-----GLVTAVAIA 284
Score = 32.3 bits (73), Expect = 0.35
Identities = 67/371 (18%), Positives = 115/371 (30%), Gaps = 125/371 (33%)
Query: 35 GNEYIDYVG-SWGPAI----IGHADDQVLA-ALGET---MKKGTSFGAPCLLENVLAEMV 85
+Y+ + S P I + H V A LG T ++ GA + ++ +
Sbjct: 227 DKDYLLSIPISC-PLIGVIQLAHY--VVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVA 282
Query: 86 ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVA 144
I+ S E F S +A + + F F G + A P S +
Sbjct: 283 IAETDSWE--SFFVSVRKA----ITV--LF--------FIGV-RCYEAYPNTSLPPSILE 325
Query: 145 -----TLGLPDSP--GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP---VVG 194
G+P SP + T E + N ++ +L + EI+ + VV
Sbjct: 326 DSLENNEGVP-SPMLSI-SNLTQEQVQDYVNKTNS--HLPAGKQVEISLVN-GAKNLVV- 379
Query: 195 NSGFIAPKPDFL----NAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG 250
SG P L +R+ +G D+ F +
Sbjct: 380 -SGP----PQSLYGLNLTLRKAKAPSGL----DQSRIPFS------ER------------ 412
Query: 251 KIIGGG--LPVGA-----YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 303
K+ LPV + + PA + L N ++ A K ++
Sbjct: 413 KLKFSNRFLPVASPFHSHL------LV---PASDLINKD-LVKNNVSFNA-----KDIQI 457
Query: 304 P--GTY--EYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
P T+ L ++G +++ I+D I PV +E +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVD-------CII-------------RLPV-KWETTTQF 496
Query: 360 ETTKFARFYRG 370
+ T F G
Sbjct: 497 KATHILDFGPG 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 6e-05
Identities = 52/363 (14%), Positives = 91/363 (25%), Gaps = 98/363 (26%)
Query: 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENV 80
V D K I E ID++ + A L + K +E V
Sbjct: 38 VQDMPKS-----ILSKEEIDHI-----IMSKDAVSGTLRLFWTLLSKQEE-MVQKFVEEV 86
Query: 81 LA---EMVISAV------PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF--EGCYH 129
L + ++S + PS+ ++ A+ R + +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 130 GHADPFLV---KAGSG---VATLGLPDSP---GVPKGATYETL---TAPFNDVSALENLF 177
++ GSG VA + + L +P + L+ L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 178 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG---ALLIFDEV-----MTGF 229
+ S +RR+ K LL+ V F
Sbjct: 207 YQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 230 RL---------------AYGGAQEY--------FGVTPD--LTTLGKIIG---GGLPVGA 261
L A +TPD + L K + LP
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-- 320
Query: 262 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 321
+ L+ NP + + I R T++ + + I
Sbjct: 321 ------------------EV--LTTNPRRL-SIIAESIR-DGLATWDNWKHVNCDKLTTI 358
Query: 322 IDA 324
I++
Sbjct: 359 IES 361
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 44.0 bits (103), Expect = 7e-05
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 34/242 (14%)
Query: 77 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 136
L++ E+ + + + + G A + + +++ K + F
Sbjct: 81 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLK--YKQKEGKAKNPVFISNFHFD 133
Query: 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVV 193
A + K ET + D+ L+ + + I+ V
Sbjct: 134 TTAAHVELNGCKAINIVTEKAFDSET-YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 192
Query: 194 GNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG--------VTP 244
NS P L + I K++G ++ D AY V
Sbjct: 193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF-CENAYFIKARDPKYKNATIKEVIF 251
Query: 245 DLTTLGKII------GGGLPVGAYGGRRDIMEM-------VAPAGPMYQAGTLSGNPLAM 291
D+ + L +G RD E+ P G L+G +A
Sbjct: 252 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
Query: 292 TA 293
Sbjct: 312 MV 313
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 39.9 bits (94), Expect = 0.001
Identities = 93/449 (20%), Positives = 150/449 (33%), Gaps = 139/449 (30%)
Query: 21 VFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAP 74
+ S + + + DG+ I +Y+G + H ++AA M G +
Sbjct: 30 IITSAQQADITVADGSHVINFCANNYLG-----LANH--PDLIAAAKAGMDSHGFGMAS- 81
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL--RLARAFTGRERIIKFEGCYHGHA 132
VRF+ GT+ L +LA AF G E I + C+
Sbjct: 82 --------------------VRFIC-GTQDSHKELEQKLA-AFLGMEDAILYSSCFD--- 116
Query: 133 DPFLVKAGSGV--ATLGLPD------------------SPGVPKGATYETLTAPFNDVSA 172
A G+ LG D A + ND+
Sbjct: 117 ------ANGGLFETLLGAEDAIISDALNHASIIDGVRLC-----KA--KRYRYANNDMQE 163
Query: 173 LENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIFDEV-M 226
LE + + A +L + + G IA L + + + AL++ D+
Sbjct: 164 LEARLKEAREAGARHVL--IATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA 217
Query: 227 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 280
GF G G+ EY V + TLGK +GG G Y R++++E + Q
Sbjct: 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEW------LRQ 269
Query: 281 AG-----TLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG---KKAGHA 331
+ S P + A I L+ ++ + L + + + AG A HA
Sbjct: 270 RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHA 329
Query: 332 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAGFT 388
I PV DA KFAR + +EG+Y F G
Sbjct: 330 II---------------PVM-LGDAVV--AQKFARE---LQKEGIYVTGFFYPVVPKGQA 368
Query: 389 ------SLAHSSDDIQHTITAAEKVLRQI 411
S AH+ + I + A ++ +Q+
Sbjct: 369 RIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 39.7 bits (92), Expect = 0.001
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 83 EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 142
E + + + + + G A + + + + G + + +
Sbjct: 81 ERTVQELFGFKHIVPTHQGRGAENLLSQ---LAIKPGQYV--AGNMYFTTTRYHQEKNGA 135
Query: 143 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-ENNKGEIAAIILEPVVGNSGFIAP 201
V D+ L+ L E IA I L V +G
Sbjct: 136 VFVDI--VRDEAHDAGLNIAFKGDI-DLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPV 192
Query: 202 KPDFLNAIRRITKENGALLIFD 223
+ A+R +T+ +G + +D
Sbjct: 193 SMANMRAVRELTEAHGIKVFYD 214
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 31.1 bits (70), Expect = 0.59
Identities = 20/120 (16%), Positives = 29/120 (24%), Gaps = 20/120 (16%)
Query: 201 PKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVG 260
P F+ + GA + FD GG LG I +
Sbjct: 224 ASPTFMQDLTEALVSTGATIAFDAT--------GGG-----------KLGGQILTCMEAA 264
Query: 261 AYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 319
R +Y G L +P + + +L KI E
Sbjct: 265 LNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERAN 324
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 30.8 bits (69), Expect = 0.84
Identities = 38/290 (13%), Positives = 67/290 (23%), Gaps = 46/290 (15%)
Query: 77 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--GRERIIKFEGCYHGHADP 134
L + + + + G + ++
Sbjct: 79 LAESVKNIF-----GYQYTIPTHQGR---GAEQIYIPVLIKKREQEKGLDRSKMVAFSNY 130
Query: 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGE-IAAIILE 190
F G K A + F D+ LE E + I+
Sbjct: 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190
Query: 191 PVVGNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAY---GGAQEYFGVTP-- 244
+ NS P L A+ I K+ ++ D AY EY T
Sbjct: 191 -ITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF-AENAYFIKQREAEYKDWTIEQ 248
Query: 245 ---------DLTTLGKIIGGGLPVGAY--GGRRDIME-------MVAPAGPMYQAGTLSG 286
D+ + +P+G + + G L G
Sbjct: 249 ITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG 308
Query: 287 -NPLAMTAGI---HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 332
+ G+ L L + + L + + + GHA
Sbjct: 309 GAMERLAVGLYDGMNLDWLAY--RIAQVQYLVDGLEEIGVVCQQAGGHAA 356
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor,
translation, antitumor protein; 1.15A {Mus musculus}
SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Length = 129
Score = 28.2 bits (63), Expect = 2.2
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDI 397
E V E +S + + + Q + G+ + + DI
Sbjct: 42 LVYEAIVMVLESTGESAFKMILDLLKSLWKSST-ITIDQMKRGYERIYNEIPDI 94
>3f79_A Probable two-component response regulator; adaptor, signaling
protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Length = 255
Score = 29.2 bits (66), Expect = 2.3
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 16/63 (25%)
Query: 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTA 165
L + GH ++ L P G+ ATY+
Sbjct: 140 NSLTYSIG---------------GHLPLPVLFVEGQAGYLEGRGLPVGLFDDATYDDRVM 184
Query: 166 PFN 168
Sbjct: 185 ELP 187
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese
binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus
subtilis} PDB: 3t9q_A*
Length = 242
Score = 28.8 bits (65), Expect = 3.0
Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 17/64 (26%)
Query: 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTA 165
+ + G F+ + V + + P G+ E ++
Sbjct: 105 ASCKFLKV---------------GSTPSFIKRGD-QVMKVQASNLPIGIINEFDVEVVSE 148
Query: 166 PFND 169
Sbjct: 149 QLKA 152
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor
antagonist, phosphatase serine kinase, ATPase, unknown
function; 2.60A {Mycobacterium tuberculosis}
Length = 399
Score = 28.5 bits (64), Expect = 4.0
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 15/61 (24%)
Query: 107 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 166
G + A GH P LV A + + + + G + +
Sbjct: 132 GEFQYCTA---------------GHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEV 176
Query: 167 F 167
Sbjct: 177 L 177
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor
protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB:
2ios_A 2iol_A
Length = 152
Score = 27.5 bits (61), Expect = 4.9
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDI 397
E V E +S + + + Q + G+ + + DI
Sbjct: 44 LVYEAIVMVLESTGESAFKMILDLLKSLWKSST-ITIDQMKRGYERIYNEIPDI 96
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein
interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Length = 193
Score = 27.7 bits (62), Expect = 5.1
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 130 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 167
G+ ++ A + L P G +
Sbjct: 102 GNIHVKILSAKGIITPLATPGILGYNYPHQLLIAKGSY 139
>3erv_A Putative C39-like peptidase; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.10A {Bacillus
anthracis}
Length = 236
Score = 27.4 bits (60), Expect = 7.1
Identities = 15/120 (12%), Positives = 34/120 (28%), Gaps = 7/120 (5%)
Query: 180 NKGEIAAIILE-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE 238
+K ++A I + + + P F+ I T ++ + Y +
Sbjct: 67 DKMKLANEIKKVDFMNDGVRGNPNEGFVGNIY--TFSESGYGVYHGPLFQLAKKYLPNKA 124
Query: 239 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 298
+ L K + G PV + + +++T H +
Sbjct: 125 VDLTGKSIEELYKSVKAGQPVVIITN----ATFAPLDEDEFTTWETNNGDVSITYNEHCV 180
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 27.9 bits (63), Expect = 7.6
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 320 GIIDAGKKAGHA--ICGGYISGMFGFFF 345
++ K GH I GG G+++
Sbjct: 354 KAVEEAKATGHIKVITGGEKRKGNGYYY 381
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 27.6 bits (62), Expect = 7.9
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 157 GATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVGN---SGFIAPKPDFLNAIR 210
+ P+N D A+ ++ + + EI + V + SG I P ++AI
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHP-EITVVS---VCHHDTPSGTINP----IDAIG 157
Query: 211 RITKENGALLIFDEVMT-----------GFRLAYGGAQEYFGVTPDLT 247
+ +GA LI D V + + G + G P LT
Sbjct: 158 ALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLT 205
>2zu6_B Programmed cell death protein 4; protein-protein complex,
ATP-binding, helicase, hydrolase, initiation factor,
nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Length = 307
Score = 27.3 bits (60), Expect = 8.5
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 344 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITA 403
E + E +S + + + Q + G+ + + DI +
Sbjct: 201 LVYEAIIMVLESTGESTFKMILDLLKSLWKSST-ITVDQMKRGYERIYNEIPDINLDVPH 259
Query: 404 AEKVLRQI 411
+ VL +
Sbjct: 260 SYSVLERF 267
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron
transport, metal-binding, transport; 1.40A {Phormidium
laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A
1baw_A 3bqv_A
Length = 105
Score = 26.1 bits (57), Expect = 9.0
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 274 PAGPMYQAGTLSGNPLAMTAGI---HTLKRLKEPGTYEY 309
P A LS + L + G T GTY Y
Sbjct: 49 PGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTY 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.414
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,758,615
Number of extensions: 450554
Number of successful extensions: 1274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 85
Length of query: 411
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 315
Effective length of database: 4,021,377
Effective search space: 1266733755
Effective search space used: 1266733755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)