RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015230
(411 letters)
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 395 bits (1015), Expect = e-136
Identities = 301/411 (73%), Positives = 349/411 (84%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
MPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+WGPAI GHA +V+ A
Sbjct: 17 MPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEA 76
Query: 61 LGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRER 120
L M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEACM VLRL RA+TGR++
Sbjct: 77 LKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDK 136
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 180
IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT P+ND+ A++ LF N
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAEN 196
Query: 181 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYF 240
GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDEVMTGFR+AYGG QE F
Sbjct: 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKF 256
Query: 241 GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR 300
GVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+
Sbjct: 257 GVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316
Query: 301 LKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE 360
L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKS+
Sbjct: 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376
Query: 361 TTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA V+ +
Sbjct: 377 LQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 238 bits (607), Expect = 5e-75
Identities = 109/427 (25%), Positives = 167/427 (39%), Gaps = 33/427 (7%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
+P GV PI D + +WD++G EY+D+ G GH +V+AA
Sbjct: 14 IPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAA 64
Query: 61 LGETMKKGT---SFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTEACMGVLRLARAF 115
+ +KK + L E++ VP V +G+EA +++ARA
Sbjct: 65 VEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA 124
Query: 116 TGRERIIKFEGCYHGHADPFLVKAG------SGVATLGLPDSPGVPKGATYETLTAPFND 169
T R I F G YHG L G +G+ + + +
Sbjct: 125 TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIA 184
Query: 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG- 228
+ +IAAI++EPV G GF A P F+ +R + E+G +LI DEV +G
Sbjct: 185 SIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 244
Query: 229 FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 288
R A E GV PDLTT K I GG P+ GR ++M+ VAP G GT +GNP
Sbjct: 245 GRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG---LGGTYAGNP 301
Query: 289 LAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 348
+A A + LK ++ + N + +L G++ +K + M E
Sbjct: 302 IACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFED 361
Query: 349 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG----FTSLAHSSDDIQHTITAA 404
+N DAK A ++G+ L I+ +
Sbjct: 362 GDHNKPDAK-----LTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEII 416
Query: 405 EKVLRQI 411
+ +
Sbjct: 417 SQCFDEA 423
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 212 bits (541), Expect = 1e-65
Identities = 82/404 (20%), Positives = 148/404 (36%), Gaps = 33/404 (8%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLL 77
P+V KG ++D++ Y D++ ++ GH +L A+ K T A +
Sbjct: 22 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 81
Query: 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 137
+ E ++ + + V +N+G EA +L R + + +
Sbjct: 82 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYE----VKKIPENMAKIVVCK 137
Query: 138 KAGSGVATLGLPDSPGVPKGATYE-----TLTAPFNDVSALENLFENNKGEIAAIILEPV 192
SG + S + + P++D+ ALE ++ + A I+EP+
Sbjct: 138 NNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPI 195
Query: 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 251
G +G I P ++L + I K+ L + DEV TG R ++ V PD+ LGK
Sbjct: 196 QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGK 255
Query: 252 IIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310
+ GG P+ A DIM ++ P T GNPLA + + L L E
Sbjct: 256 ALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEKLCENA 312
Query: 311 NKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFARF 367
K+ G + + K + + G + F V + K +
Sbjct: 313 EKLGGPFLENLKRELKDSKIV---RDVRGKGLLCAIEFKNELVNVLDICLKLKENGL--I 367
Query: 368 YRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
R + ++ + P L + + + K ++
Sbjct: 368 TRDVHDKTIRLTP--------PLCITKEQLDECTEIIVKTVKFF 403
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 211 bits (539), Expect = 3e-65
Identities = 88/396 (22%), Positives = 160/396 (40%), Gaps = 22/396 (5%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 78
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T
Sbjct: 24 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 83
Query: 79 NV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFL 136
+ E I+ + + V +N+G EA +LAR + + I+ + A F
Sbjct: 84 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 143
Query: 137 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 196
+ S +++ P S P+ND+ ALE ++ +AA ++EP+ G +
Sbjct: 144 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 201
Query: 197 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 255
G + P P +L +R + + L I DE+ TG R A +Y V PD+ LGK + G
Sbjct: 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 261
Query: 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315
GL + D + + P T GNPL I L+ L+E E +K+
Sbjct: 262 GLYPVSAVLCDDDIMLTIK--PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGI 319
Query: 316 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 375
L ++ A+ G + K+++ + + + G
Sbjct: 320 ILRNELMKLPSDVVTAVRG--KGLLNAIVI-----------KETKDWDAWKVCLRLRDNG 366
Query: 376 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 409
+ P+ + + L D+++ +I K +
Sbjct: 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTIL 402
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 207 bits (527), Expect = 1e-63
Identities = 108/398 (27%), Positives = 171/398 (42%), Gaps = 39/398 (9%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFGAPCL 76
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ + P
Sbjct: 20 DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTP 79
Query: 77 LENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
+ + + +P F SGTEA L+ ARA TGR++ + + G
Sbjct: 80 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGS 139
Query: 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195
L + + P P V P+NDV AL+ + E AA+ILEPV G
Sbjct: 140 L--SVTWEPKYREPFLPLVE-----PVEFIPYNDVEALKRAVDE---ETAAVILEPVQGE 189
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG 254
G P+FL A R IT+E GALLI DE+ TG R A E+FG+ PD+ TL K +G
Sbjct: 190 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALG 249
Query: 255 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKIT 314
GG+P+G R ++ + G T GNPLAM AG+ ++ L+ +E ++
Sbjct: 250 GGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELG 306
Query: 315 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 374
+ + + G G+ ++ + + +R + +
Sbjct: 307 PWFMEKLRAIPSPKIREVRG---MGLMVGLE-------LKEKAAPYIARLEKEHRVLALQ 356
Query: 375 G----VYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 408
+ F P L +D++ + A VL
Sbjct: 357 AGPTVIRFLP--------PLVIEKEDLERVVEAVRAVL 386
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 161 bits (406), Expect = 1e-45
Identities = 88/412 (21%), Positives = 158/412 (38%), Gaps = 26/412 (6%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 76
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 77 -LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
+ ++ + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----------ALENLFENNKGEIA 185
S P + G T F A + + + G +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 186 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FRLAYGGAQEYFGVTP 244
A I EP++ + G I ++ A++R + G LLI DE TG R A + GVTP
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 263
Query: 245 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 304
D+ TL K +G GLP+ A I E A T +PL G+ L ++
Sbjct: 264 DILTLSKTLGAGLPLAAIVTSAAIEER-AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322
Query: 305 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKF 364
G N + L +G++D ++ + G + K+
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR-----RTKEPADGLG 377
Query: 365 ARFYRGMLEEGVYFAPSQFEAGFT------SLAHSSDDIQHTITAAEKVLRQ 410
A+ R + G+ Q L S D+I ++ + + +
Sbjct: 378 AKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 147 bits (371), Expect = 1e-40
Identities = 96/415 (23%), Positives = 160/415 (38%), Gaps = 42/415 (10%)
Query: 19 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPC- 75
S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 76 -LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYH 129
+ ++V +E V +SG+ A +++A + R+R + F YH
Sbjct: 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYH 145
Query: 130 GHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 184
G + + L P++ P + D+ L ++ EI
Sbjct: 146 GDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI 205
Query: 185 AAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 242
AA+I+EP+V +G P++L IR+I G LLI DE+ TGF R A E+ +
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI 265
Query: 243 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 299
PD+ LGK + GG + + A R++ E ++ AG T GNPLA A +L
Sbjct: 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325
Query: 300 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 359
L+ + + I +L + + A + + G G T PV
Sbjct: 326 ILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVETTHPV--------- 374
Query: 360 ETTKFARFYRGMLEEGVYFAPSQFEAGFT-----SLAHSSDDIQHTITAAEKVLR 409
A + +E+GV+ P G +Q A + ++
Sbjct: 375 ---NMAALQKFFVEQGVWIRP----FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 100 bits (248), Expect = 1e-23
Identities = 68/473 (14%), Positives = 122/473 (25%), Gaps = 105/473 (22%)
Query: 1 MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 60
++ +G+++ D+DGN +D IG++ ++
Sbjct: 28 QNAEAVHF----------FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKL 77
Query: 61 LGETMKKGTSFGAPCL-------LENVLAEMVIS-AVPSIEMVRFVNSGTEACMGVLRLA 112
+ + T P L L E ++S A + + + G+ + +
Sbjct: 78 VQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTI 137
Query: 113 RAF--------------------------TGRERIIKFEGCYHGHADPFLVKAGSGVATL 146
+ I+ F G +HG L S
Sbjct: 138 FMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHK 197
Query: 147 GLPDSPGVPK--------------GATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 192
S P + +V L + K +A II+EP+
Sbjct: 198 IDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPI 257
Query: 193 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVTPDLTTL 249
G DF +R I++++G + DEV TG + D+ T
Sbjct: 258 QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTF 317
Query: 250 GKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 309
K + G E P P T G+P + +K
Sbjct: 318 SKKM--------MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSN 369
Query: 310 LNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFAR 366
L G++D + I + G F + + N +
Sbjct: 370 AAHAGKVLLTGLLDLQARYPQFI--SRVRGRGTFCSFDTPDESIRN-------------K 414
Query: 367 FYRGMLEEGV----------YFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLR 409
+GV F P +L + +L
Sbjct: 415 LISIARNKGVMLGGCGDKSIRFRP--------TLVFRDHHAHLFLNIFSDILA 459
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 70.3 bits (171), Expect = 8e-14
Identities = 53/445 (11%), Positives = 109/445 (24%), Gaps = 58/445 (13%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD-------DQVLAALGETMKKGTS 70
+P ++ E P ++ D D A+ ++M+
Sbjct: 5 EPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM 64
Query: 71 FGAPCLLE----NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRER 120
G LAE V + + + G A + + R +
Sbjct: 65 RGDEAFSGSRSYYALAESV-KNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123
Query: 121 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-EN 179
++ F + G V + + ++ ++ D+ LE E
Sbjct: 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEV 179
Query: 180 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-------MTGFRLA 232
+ I+ ++G L A+ I K+ ++ D R A
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 233 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP----------AGPMYQAG 282
+T + ++ A ++ M + Q G
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 283 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 342
+ L A L + ++L Q ++D ++ G F
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI-AQVQYLVDGLEEIGVVCQQAGGHAAFV 358
Query: 343 ---FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG------------- 386
P F + R + E G + + G
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAV-EIGSFLLGRDPKTGKQLPCPAELLRLT 417
Query: 387 FTSLAHSSDDIQHTITAAEKVLRQI 411
++ + I A + V
Sbjct: 418 IPRATYTQTHMDFIIEAFKHVKENA 442
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 66.0 bits (159), Expect = 1e-12
Identities = 56/366 (15%), Positives = 92/366 (25%), Gaps = 42/366 (11%)
Query: 53 ADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109
+++ A+ + +G LE + AE E FV SGT +
Sbjct: 12 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETF-----GKEAALFVPSGTMGNQVSI 66
Query: 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169
+ + +A L VP
Sbjct: 67 MAHTQRGDEVILEADSHIFWYEVG--------AMAVLSGVMPHPVPGKNGAMDPDDVRKA 118
Query: 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + + I +E SG + + I I KE+G + D
Sbjct: 119 I----RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174
Query: 230 RLA--YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 287
+EY G + G RD +E A M G
Sbjct: 175 ASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 234
Query: 288 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 347
LA I K K E + + K+ G+++ + T+
Sbjct: 235 VLAAAGIIALTK-------MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD 287
Query: 348 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAE 405
N F + GV T S +DI+ + E
Sbjct: 288 NLKVNAHG-----------FIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336
Query: 406 KVLRQI 411
K+ R+
Sbjct: 337 KLFRKF 342
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 66.1 bits (160), Expect = 2e-12
Identities = 48/412 (11%), Positives = 101/412 (24%), Gaps = 45/412 (10%)
Query: 34 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 93
YID + G + + E ++ L++ E+ + +
Sbjct: 40 SSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYD---LKDKAKELF-----NYD 91
Query: 94 MVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 150
+ + G A + + + G+ + F +H V+ A + +
Sbjct: 92 YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE 151
Query: 151 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 210
+ + + ++ I AI+ ++G L +
Sbjct: 152 KAFDSETYDDWKGDFDIKKLKEN--IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209
Query: 211 RITKENGALLIFDEVMTGFRLAYGG--------------AQEYFGVTPDLTTLGKIIGGG 256
I K++G ++ D + + + LT K
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269
Query: 257 LPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNP--LAMTAGIHTLKRLKEPGTYEYLNK 312
G R + I + + G M A + L+ E Y
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 329
Query: 313 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 372
L + +AG + G + + P F R +
Sbjct: 330 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV- 388
Query: 373 EEGVYFAPSQFEAGFTSLAHSS-------------DDIQHTITAAEKVLRQI 411
E G + G A D + + A + +
Sbjct: 389 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 61.0 bits (147), Expect = 8e-11
Identities = 59/410 (14%), Positives = 116/410 (28%), Gaps = 61/410 (14%)
Query: 21 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD-QVLAALGETMKK-GTSFGAPCLLE 78
+ S + + + DG+ I++ + +G A+ ++AA M G + +
Sbjct: 30 IITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 79 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 138
++ F+ A G D +
Sbjct: 87 GTQDSHKEL---EQKLAAFLGMEDAILYSSCFDANGGLFE--------TLLGAEDAIISD 135
Query: 139 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 198
A + + + D + K Y ++ A I + V G
Sbjct: 136 ALNHASII---DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV 192
Query: 199 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPD---LTTLGKII 253
I L + + + AL++ D+ + G EY V +T
Sbjct: 193 I----ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKA 248
Query: 254 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 313
GG G R++++E + Y + + + L
Sbjct: 249 LGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWAN 308
Query: 314 TGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370
+ + + AG A HAI I M G + +F R
Sbjct: 309 ARQFREQMSAAGFTLAGADHAI----IPVMLG-----------------DAVVAQKFARE 347
Query: 371 MLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKVLRQI 411
+ +EG+Y + S AH+ + I + A ++ +Q+
Sbjct: 348 LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 48.4 bits (114), Expect = 8e-07
Identities = 46/411 (11%), Positives = 101/411 (24%), Gaps = 70/411 (17%)
Query: 18 QPIVFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSF 71
+ G + D +Y+ DY+G + H Q++ A + ++ G
Sbjct: 21 RRYPVAQGAGRWL-VADDRQYLNFSSNDYLG------LSH-HPQIIRAWQQGAEQFGIGS 72
Query: 72 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 131
G V+ + + + G R + F + +
Sbjct: 73 GGS---------------------GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAAN 111
Query: 132 ADPFLVKAGSGVATLGLPDSPGVPKGATYET----LTAPFNDVSALENLFENNKGEIAAI 187
S A + NDV+ L L + +
Sbjct: 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMV 171
Query: 188 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL--AYGGAQEYFGVTPD 245
+ E V G AP + +++T+++ L+ D+ + G+ V P+
Sbjct: 172 VTEGVFSMDGDSAPLAEI----QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 227
Query: 246 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 305
L + G G+ A + + + T + +
Sbjct: 228 LLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPA--QAQALRASLAVIRSD 285
Query: 306 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFA 365
+ + L + + + S + A
Sbjct: 286 EGDARREKLAALITRFRAGVQDLPFTLADS-----------CSAIQPLIVGDNSRALQLA 334
Query: 366 RFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 407
+ ++G + + + AH DI +
Sbjct: 335 EK---LRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 47.2 bits (111), Expect = 2e-06
Identities = 35/340 (10%), Positives = 87/340 (25%), Gaps = 24/340 (7%)
Query: 75 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 134
L N + E + T + + A ++ + H
Sbjct: 112 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK 171
Query: 135 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 194
+ G + + V G V +EN + + +
Sbjct: 172 AVSFVGMNMRLV-----ETVLDGDRVYV------PVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 195 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY---FGVTPDLTTLGK 251
+ I +I + I + Y + + V +++ K
Sbjct: 221 FFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278
Query: 252 IIGGGLPVGA-YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 310
+ + G Y + ++ ++ + P + + + + ++ +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRAS---ATPVVNTLVSLLSMGSKNYLELVKNQ 335
Query: 311 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 370
L + + D KK G PV T R +
Sbjct: 336 KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP-RGIKK 394
Query: 371 MLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTITAAEKV 407
G + + ++ ++DI ++++ EK+
Sbjct: 395 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 46.7 bits (109), Expect = 2e-06
Identities = 44/364 (12%), Positives = 73/364 (20%), Gaps = 39/364 (10%)
Query: 50 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 109
I A +V AL + L + V V +GT A L
Sbjct: 12 IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 71
Query: 110 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 169
G + +
Sbjct: 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN-----------GAKLMTVDGPAAKLDIVR 120
Query: 170 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 229
+ + + D + AI + K + L D
Sbjct: 121 LRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180
Query: 230 RLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 286
L G A+ + D + G G L A + S
Sbjct: 181 ALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK 240
Query: 287 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 346
L N L QG+ G + GG + +
Sbjct: 241 MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE---GLGGVEVLGGTEANILFCRLD 297
Query: 347 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF----TSLAHSSDDIQHTIT 402
+L+ G F ++ TS A +++D+ H +
Sbjct: 298 S------------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLN 339
Query: 403 AAEK 406
Sbjct: 340 QVRL 343
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 43.7 bits (101), Expect = 3e-05
Identities = 42/339 (12%), Positives = 95/339 (28%), Gaps = 31/339 (9%)
Query: 76 LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 135
+ N L + + ++ R N EA V+ + ++ + + H +
Sbjct: 51 FIHNQLPKFL-----GCDVARVTNGAREAKFAVM---HSLAKKDAWVVMDENCHYSSYVA 102
Query: 136 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 195
+AG + T A + A +GE+ ++ GN
Sbjct: 103 AERAGLNI----------ALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGN 152
Query: 196 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGG 255
G + ++ E L+ + R+ + K +
Sbjct: 153 YGNLPDVKKI----AKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGH--KSMAA 206
Query: 256 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 315
P+G G + + E+V Y+ + P E + +
Sbjct: 207 SGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDE 266
Query: 316 E--LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 373
E + +K G G FF + K YR +
Sbjct: 267 EVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFH---AEVLYEISKKAKGGRFFLYRELKS 323
Query: 374 EGVYFAPSQFEAGF--TSLAHSSDDIQHTITAAEKVLRQ 410
++ F ++ S +++ + + A ++++ +
Sbjct: 324 RKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 362
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 33.7 bits (75), Expect = 0.030
Identities = 41/372 (11%), Positives = 84/372 (22%), Gaps = 42/372 (11%)
Query: 40 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFV 98
DY P +L + + A ++ + V F+
Sbjct: 7 DYSVGMHPK--------ILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFI 58
Query: 99 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 158
+ GT+ + LA + G ++ G
Sbjct: 59 SGGTQTNLIACSLALRPWEAVIATQLGHISTHET--------------GAIEATGHKVVT 104
Query: 159 TYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 218
++ + ++ L I KE+G
Sbjct: 105 APCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGL 164
Query: 219 LLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 275
L D L+ D+ +G GG+ A D ++ A
Sbjct: 165 YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARH 224
Query: 276 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 335
+ ++ L +K + NK+ L G+ G +
Sbjct: 225 LIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASN 284
Query: 336 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSD 395
+ F E + + + E + TS A
Sbjct: 285 QL-----FPILENTMIA----------ELNNDFDMYTVEPLKDGTCIMRLC-TSWATEEK 328
Query: 396 DIQHTITAAEKV 407
+ + +++
Sbjct: 329 ECHRFVEVLKRL 340
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 28.8 bits (63), Expect = 1.2
Identities = 33/205 (16%), Positives = 51/205 (24%), Gaps = 32/205 (15%)
Query: 54 DDQVLAALGETMKKGTSFGAPCL--LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL 111
+ LAA+ + G P LE + + V+S T L
Sbjct: 11 GAEELAAVKTVLDSGWITTGPKNQELEAAFCRLT-----GNQYAVAVSSATAGMHIALMA 65
Query: 112 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 171
G E +I + + ++ + V D+ V
Sbjct: 66 LGIGEGDE-VITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMV--------------TPE 110
Query: 172 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 231
+E AII G P L+AI + + G +I D
Sbjct: 111 HIEAAITPQ---TKAIIPVHYAGA-------PADLDAIYALGERYGIPVIEDAAHATGTS 160
Query: 232 AYGGAQEYFGVTPDLTTLGKIIGGG 256
G G K I
Sbjct: 161 YKGRHIGARGTAIFSFHAIKNITCA 185
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 28.7 bits (63), Expect = 1.3
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 4/81 (4%)
Query: 202 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 261
L + K+ G ++ F+ +Y E L L K+
Sbjct: 110 PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDT--QR 167
Query: 262 YGGRRDIMEMVAPAGPMYQAG 282
G +I + + + G
Sbjct: 168 NGKDGNIGMKIPIY--LSELG 186
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 27.9 bits (61), Expect = 2.2
Identities = 23/211 (10%), Positives = 41/211 (19%), Gaps = 29/211 (13%)
Query: 97 FVNSGTEACMGVLRLARAFTGRERIIKFEGCY---------HGHADPFLVKAGSGVATLG 147
+EACM + + + F + +
Sbjct: 120 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIP 179
Query: 148 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 207
+ F D + + N + GN F P D
Sbjct: 180 MRPGQL-------------FMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD-AL 225
Query: 208 AIRRITKENGALLIFDEVMTGFRLA-----YGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 262
+ + D GF V + K L G
Sbjct: 226 DKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWV 285
Query: 263 GGR-RDIMEMVAPAGPMYQAGTLSGNPLAMT 292
R + + Y G + + +
Sbjct: 286 IWRDEEALPQELVFNVDYLGGQIGTFAINFS 316
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 27.2 bits (59), Expect = 3.6
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 110 RLARAFTGRERIIKFEGCY---HGHAD 133
R+ +A R++++K+ Y +G AD
Sbjct: 9 RIKKANEYRKKVLKYTNVYRMVYGEAD 35
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 26.3 bits (58), Expect = 5.8
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 355 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 411
+ + +L G + +Q+ G + ++D++ I L ++
Sbjct: 55 ERSAIAREHMGQLLHQLLCAGH-LSTAQYYQGLYEILELAEDMEIDIPHVWLYLAEL 110
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 26.3 bits (56), Expect = 7.9
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 78 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 137
+ V+ A P+ + + +A ++ ER+ + L
Sbjct: 263 AELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAALQRLPGLHL- 321
Query: 138 KAGSGVATLGLPD 150
G+ +GL D
Sbjct: 322 -IGNAYKGVGLND 333
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.414
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,607,821
Number of extensions: 79514
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 26
Length of query: 411
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 324
Effective length of database: 1,213,086
Effective search space: 393039864
Effective search space used: 393039864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)