BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015231
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/410 (48%), Positives = 273/410 (66%), Gaps = 2/410 (0%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
+T+D +GLL LY+ASYLRV GE+IL+EA F PL ++V H+L+ +
Sbjct: 147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIR 206
Query: 62 RGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATK 121
RG+PR+EAR Y+S+Y+ D + N+ +LE AK+DFN+LQ LHR ELSEI RWWKD+DF K
Sbjct: 207 RGLPRVEARHYLSVYQ-DIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRK 265
Query: 122 LPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHA 181
LP+ARDR+VE YFWI GVYFEP+YS RK +TK+IA+AS++DD YD Y T EEL +T+A
Sbjct: 266 LPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNA 325
Query: 182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVE 241
IERW++ +E+P+YM+ Y ALLDV +EM + + YAK A+ L ++Y VE
Sbjct: 326 IERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVE 385
Query: 242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301
AKW Y P+FEE N+ + GY MLA+ + VG+ D+ +T WA S PKII++S+
Sbjct: 386 AKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQAST 444
Query: 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361
+I R DDV +K + R D S++ECY+++YGV+ +EA + VE W ++N+E
Sbjct: 445 IICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLK 504
Query: 362 PNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411
P P + L SLNLAR+M VLY+ GDGYT K I SLL++P+ +
Sbjct: 505 PTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 265/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 142 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 201
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 202 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 261 TLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 320
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 321 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNV 380
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y +LA + +G++ + T++ +W PKI+ +S
Sbjct: 381 ESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMK--SATEQDFEWLSKNPKILEAS 438
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 439 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 498
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 499 RPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 142 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 201
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 202 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 261 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 320
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 321 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 380
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 381 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 438
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 439 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 498
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 499 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 140 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 199
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 200 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 319 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 378
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 436
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 437 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 496
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 140 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 199
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 200 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 319 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 378
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 436
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 437 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 496
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 127 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 186
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 187 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 245
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 246 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 305
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 306 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 365
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 366 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 423
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 424 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 483
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 484 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 338 bits (868), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 140 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 199
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 200 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 319 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 378
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 436
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 437 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 496
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 337 bits (865), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/412 (42%), Positives = 264/412 (64%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 140 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 199
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 200 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYFW LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 319 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 378
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 436
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 437 VIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 496
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 334 bits (857), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 263/412 (63%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 140 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 199
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 200 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYF LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 259 TLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 319 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 378
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 436
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 437 VIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 496
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 333 bits (853), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 263/412 (63%), Gaps = 5/412 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQVEHSLEIPLH 61
L +D GLL LYEAS++R ++ILE+A F +PL +QV H+LE LH
Sbjct: 140 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 199
Query: 62 RGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
+G+PR+E R +IS IY+ + S +N ++L AKLDFNLLQ LH+ EL+++SRWWKD+DF T
Sbjct: 200 KGVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
LP+ARDR+VECYF LGVYFEP+YS R + K I++ S++DD +D YGT++EL+ +T
Sbjct: 259 TLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + LP YM++ Y A+LD+ K+ E +L + + +A E +K +V+ Y V
Sbjct: 319 AIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNV 378
Query: 241 EAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300
E+ WF Y P E + N+ ++ Y LA + +G++ + T++ +W PKI+ +S
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMK--SATEQDFEWLSKNPKILEAS 436
Query: 301 SLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQ 360
+I R+ DD TY+VE+ RG + +EC ++ YG+S +EA K + M E W +INE +
Sbjct: 437 VIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL 496
Query: 361 DPNHPPLQWLLPSLNLARMMVVLY-QNGDGYTNSTGKTKDRIASLLVDPLPM 411
P ++L P LNLAR++ V Y N DGYT+ K I +LLVD + +
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/410 (38%), Positives = 239/410 (58%), Gaps = 5/410 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTP-LVDQVEHSLEIPL 60
L D K +L LYEAS+L ++GENIL+EA F L +QV H+LE+PL
Sbjct: 144 LKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPL 203
Query: 61 HRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
HR RLEA I Y N+++LELA LD+N++Q++++ +L E SRWW+ + AT
Sbjct: 204 HRRTQRLEAVWSIEAYRKKEDA-NQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLAT 262
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
KL FARDRL+E ++W +GV FEP+YS R + K+ + ++IDDIYDVYGTL+EL+LFT
Sbjct: 263 KLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTD 322
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEME-DKLVNKEPLCCMYYAKEAIKGLVKAYF 239
A+ERW+V A N+LP YM++C+ AL + + E+ D L +K Y K A L A+
Sbjct: 323 AVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTK-AWADLCNAFL 381
Query: 240 VEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRS 299
EAKW + K PTF++ N+ SS P+ + A + I K ++ II
Sbjct: 382 QEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVV-QNIKKEEIENLQKYHDIISR 440
Query: 300 SSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 359
S I RL +D+ + E RG+ +SV CY++ G+SEE A + +++ W +N+E
Sbjct: 441 PSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEK 500
Query: 360 QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 409
+ ++ ++NLAR Y NGD +T+ T+ R+ S++ +P+
Sbjct: 501 LGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/411 (36%), Positives = 231/411 (56%), Gaps = 5/411 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTPLVDQ----VEHSLE 57
L D KG+L LYEAS+L +GE+ LE A EF + + + HSL+
Sbjct: 138 LAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLD 197
Query: 58 IPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDID 117
+PLH + +EAR +I Y A N LI ELAKL+FN++QA H+ EL ++SRWW +
Sbjct: 198 LPLHWRIQSVEARWFIDAY-ARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLC 256
Query: 118 FATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKL 177
F KLPF RDRLVE +FW +G++ ++ RK II +A+VIDDIYDVYGTL+EL+L
Sbjct: 257 FPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELEL 316
Query: 178 FTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKA 237
FT +RW+ + LP YMQ+CY+ + + + + ++ + C+ Y ++++ LV+A
Sbjct: 317 FTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEA 376
Query: 238 YFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKII 297
YF EAKW+H+ Y P+ +E + + +S P + + + +D I+
Sbjct: 377 YFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDIL 436
Query: 298 RSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357
+ +I RL DD+ T E RGD P +++CY+++ SEEEA +K ++ W ++N
Sbjct: 437 CLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNT 496
Query: 358 EIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP 408
I P + + N+ R+ +Y +GDG+ KT + IA LL +P
Sbjct: 497 AIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 229/411 (55%), Gaps = 5/411 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTP--LVDQVEHSLEIP 59
L++D +GLL LYEAS+L +GE LE A EF L+ ++ +SL+IP
Sbjct: 134 LSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIP 193
Query: 60 LHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFA 119
LH + R A +I Y N ++LELA LD N++QA + EL E RWW++ F
Sbjct: 194 LHWRIKRPNAPVWIEWYRK-RPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFV 252
Query: 120 TKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFT 179
KLPFARDRLVECYFW G+ ++++ R M K+ A+ +VIDDIYDVYGTLEEL+ FT
Sbjct: 253 EKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFT 312
Query: 180 HAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYF 239
I RW++ + ++LP YMQ+C+ AL + V + ++ ++ + + Y +++ L Y
Sbjct: 313 DLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYM 372
Query: 240 VEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRS 299
VEA+WF+ + P+ EE +ENS S P + + D + TK +D ++R
Sbjct: 373 VEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTD-SFTKETVDSLYKYHDLVRW 431
Query: 300 SSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 359
SS + RL DD+ T E RGD P S++CY+ Y SE EA +K ++ W +N E
Sbjct: 432 SSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAER 491
Query: 360 QDPNHP-PLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPL 409
+ P ++ +++L RM ++Y NGDG+ ++ L +P
Sbjct: 492 VSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPF 542
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 271 bits (692), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 226/392 (57%), Gaps = 7/392 (1%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXX-TPLVDQVEHSLEIPL 60
L +D +GLL LYEAS+L QGE L A +F L+ +E +LE+P
Sbjct: 162 LVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPT 221
Query: 61 HRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFAT 120
H + AR +I Y+ N +LELAKLDFN++QA + EL E SRWW
Sbjct: 222 HWRVQMPNARSFIDAYKR-RPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVH 280
Query: 121 KLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180
+LPF RDR+VECY+W GV ++ R +TKI A+ + IDD++D+YGTLEEL+LFT
Sbjct: 281 ELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTT 340
Query: 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFV 240
AI+RW++ + +LP YMQ+CY AL + V EM + + Y ++ GL+++Y +
Sbjct: 341 AIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLI 400
Query: 241 EAKWFHAKYVPTFEECVENSTMS-SGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRS 299
EAKW++ + P+ EE ++NS +S G P+L+ L D +I + A + I+R+
Sbjct: 401 EAKWYYKGHKPSLEEYMKNSWISIGGIPILS-HLFFRLTD-SIEEEAAESMHKYHDIVRA 458
Query: 300 SSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 359
S I RL DD+ T E ERGD P SV+CY+ + SEEEA ++ +++ W +N+E+
Sbjct: 459 SCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEM 518
Query: 360 QDPNHPPLQWLLPSLNLARMMVVLYQN-GDGY 390
+ ++ S NLARM +YQ+ DG+
Sbjct: 519 MTSSFSKY-FVEVSANLARMAQWIYQHESDGF 549
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 236/436 (54%), Gaps = 31/436 (7%)
Query: 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXXXTP--------LVDQVE 53
D +L LY AS L GENIL+EA F T L +++
Sbjct: 387 FNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIK 446
Query: 54 HSLEIPLHRGMPRLEARQYISIYEADNS-----------TRNELILELAKLDFNLLQALH 102
++L+ H +PR+EA++Y +Y D + NE LEL KLDFN++Q++H
Sbjct: 447 YALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIH 506
Query: 103 RIELSEISRWWKDIDFATKLP---FARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIA 159
+ E+ ++ W++D + LP FAR+R +E YF + +EP+Y+ R TK+ +
Sbjct: 507 QEEMKNVTSWFRD----SGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQ 562
Query: 160 SVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKE 219
+V+DD+YD YGTL+ELKLFT A+ RW++ LP YM++CY D+V E+ + ++
Sbjct: 563 TVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQ 622
Query: 220 PLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLED 279
+ + ++ + + Y+ EA+W A+YVPT +E ++N S G +L + ++ ++
Sbjct: 623 GRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDG 682
Query: 280 MAITKRALDWAISVPK---IIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG-V 335
+++ AL+ + P + +SLI+RL DD TYK E+ RG+ SS+ECY++ +
Sbjct: 683 QLLSQEALE-KVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPEC 741
Query: 336 SEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTG 395
+EEEA + I ++E + E P+ P R+ +V++++GDG+ S
Sbjct: 742 TEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKL 801
Query: 396 KTKDRIASLLVDPLPM 411
+ KD I L++PLP+
Sbjct: 802 EVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 206/373 (55%), Gaps = 18/373 (4%)
Query: 51 QVEHSLEIPLHRGMPRLEARQYISIYEADNS-----------TRNELILELAKLDFNLLQ 99
+VE++L+ P H+ MPRLEAR YI Y D+ NE LELAKLDFN +Q
Sbjct: 416 EVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQ 475
Query: 100 ALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIA 159
++H+ EL ++ RWWK F T L F R+R+ E YF FEP++S R+ TK
Sbjct: 476 SIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFT 534
Query: 160 SVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKE 219
++DD+YD +G+L++LKLFT +++RW++ +++P+ M++C+ + ++ + ++
Sbjct: 535 VILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQ 594
Query: 220 PLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGY-PMLAVEALVGLE 278
+ Y + K ++AY EA+W AKYVP+F E +EN+++S ++ + AL E
Sbjct: 595 GRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGE 654
Query: 279 DMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSE 337
+T L + ++ L RL +D TY+ E+ +G+ S+++CY++ + +SE
Sbjct: 655 --VLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISE 712
Query: 338 EEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTG-K 396
EEA + ++E +N E + P + L AR+M + Y GDG T S +
Sbjct: 713 EEALQHVYSVMENALEELNREFVNNKIPDIYKRL-VFETARIMQLFYMQGDGLTLSHDME 771
Query: 397 TKDRIASLLVDPL 409
K+ + + L P+
Sbjct: 772 IKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 36/427 (8%)
Query: 7 KGLLCLYEASYLRVQGENILEEACEFXX---XXXXXXXXXXXTPLVDQVEHSLEIPLHRG 63
+ ++ L+ AS L E +++A +F T L ++E+ +E P H
Sbjct: 340 RSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMS 399
Query: 64 MPRLEARQYISIYEADN------------STRNELILELAKLDFNLLQALHRIELSEISR 111
+PRLEAR YI Y+ DN S N LELAKLDFN++Q+LH+ EL ++R
Sbjct: 400 IPRLEARSYIDSYD-DNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTR 458
Query: 112 WWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGT 171
WWK+ A + F R R+ E YF FEP+YS TR TKI + + DD+ D++ T
Sbjct: 459 WWKESGMA-DINFTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFAT 515
Query: 172 LEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAI 231
L+ELK FT ++RW+ +E+P+ MQ C+ +++E+ + +V + + + ++
Sbjct: 516 LDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPW 575
Query: 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGY------PMLAVEALVGLEDMAITKR 285
+ Y E +W A Y+PTFEE ++ +S G P+L + LV +D + K
Sbjct: 576 ELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELV--KDDVVEK- 632
Query: 286 ALDWAISVP-KIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNK 343
+ P + SL RL +D TY+ E+ RG S + CY++ G +EE+A
Sbjct: 633 -----VHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKH 687
Query: 344 IKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIA 402
I +V+ + E P N P+ NL + + Y+ DGY + + KD I
Sbjct: 688 ICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIR 747
Query: 403 SLLVDPL 409
+ +DP+
Sbjct: 748 KVYIDPI 754
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 8 GLLCLYEASYLRVQGENILEEACEFXXXXXXXXXXXX--------XTPLVDQVEHSLEIP 59
G+ LY AS L E IL+ A EF L ++ +LEIP
Sbjct: 339 GMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIP 398
Query: 60 LHRGMPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELS 107
+ +PR+E R YI Y +N N LELAK D+N QA H++E
Sbjct: 399 WYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458
Query: 108 EISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI 162
+W+++ + ++ R L+ECY+ FE + S R K + I
Sbjct: 459 IFQKWYEE-NRLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAI 512
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,847,063
Number of Sequences: 62578
Number of extensions: 463560
Number of successful extensions: 1122
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 19
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)