Query 015231
Match_columns 411
No_of_seqs 197 out of 869
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 4E-119 8E-124 945.8 41.5 404 2-408 134-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 6E-117 1E-121 947.3 38.8 401 3-411 353-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 3.3E-87 7.1E-92 714.8 35.3 362 3-410 399-800 (800)
4 PF03936 Terpene_synth_C: Terp 100.0 3.1E-51 6.7E-56 394.2 22.7 269 87-356 1-270 (270)
5 cd00868 Terpene_cyclase_C1 Ter 100.0 3.1E-48 6.6E-53 376.0 30.2 282 101-384 1-284 (284)
6 cd00687 Terpene_cyclase_nonpla 100.0 3.1E-36 6.8E-41 295.7 22.1 249 105-360 14-266 (303)
7 PLN02150 terpene synthase/cycl 100.0 1E-33 2.3E-38 230.9 10.4 95 317-411 1-96 (96)
8 cd00385 Isoprenoid_Biosyn_C1 I 99.9 6.8E-22 1.5E-26 183.7 13.5 229 135-378 2-243 (243)
9 PF06330 TRI5: Trichodiene syn 97.9 0.0004 8.7E-09 69.4 15.6 195 142-359 78-277 (376)
10 cd00686 Terpene_cyclase_cis_tr 97.7 0.00092 2E-08 65.9 14.2 201 135-358 69-276 (357)
11 PF00494 SQS_PSY: Squalene/phy 95.6 0.84 1.8E-05 43.8 16.7 203 147-377 18-238 (267)
12 cd00867 Trans_IPPS Trans-Isopr 93.6 1.7 3.6E-05 40.7 13.1 118 223-357 86-214 (236)
13 cd00683 Trans_IPPS_HH Trans-Is 90.7 16 0.00035 35.0 16.8 198 148-379 25-238 (265)
14 TIGR03465 HpnD squalene syntha 90.3 18 0.00039 34.8 17.6 195 148-377 19-227 (266)
15 TIGR03464 HpnC squalene syntha 88.5 24 0.00052 34.0 17.8 108 148-277 19-131 (266)
16 cd00685 Trans_IPPS_HT Trans-Is 86.9 22 0.00048 34.0 14.3 120 223-357 109-239 (259)
17 PLN02632 phytoene synthase 85.7 41 0.00089 33.7 16.6 196 148-373 74-284 (334)
18 TIGR02749 prenyl_cyano solanes 78.6 71 0.0015 31.8 14.5 86 223-314 134-220 (322)
19 PLN02890 geranyl diphosphate s 75.5 80 0.0017 32.8 14.2 89 222-316 227-316 (422)
20 PLN02857 octaprenyl-diphosphat 75.2 69 0.0015 33.2 13.6 86 223-315 228-315 (416)
21 COG3707 AmiR Response regulato 68.5 4.7 0.0001 37.1 3.0 45 305-349 129-174 (194)
22 PF03861 ANTAR: ANTAR domain; 67.3 7 0.00015 28.3 3.2 29 322-350 15-43 (56)
23 COG0142 IspA Geranylgeranyl py 67.3 1.4E+02 0.003 29.7 14.0 108 223-336 135-252 (322)
24 TIGR02748 GerC3_HepT heptapren 64.4 1.5E+02 0.0034 29.3 14.4 88 223-315 130-217 (319)
25 KOG1719 Dual specificity phosp 63.5 6.6 0.00014 34.9 2.8 29 318-346 119-148 (183)
26 PF12368 DUF3650: Protein of u 59.5 8 0.00017 24.2 1.8 18 328-345 9-26 (28)
27 KOG1464 COP9 signalosome, subu 48.8 1E+02 0.0022 30.3 8.4 145 204-376 229-376 (440)
28 CHL00151 preA prenyl transfera 47.4 3E+02 0.0064 27.3 12.7 87 223-315 135-222 (323)
29 PRK10888 octaprenyl diphosphat 42.2 3.6E+02 0.0078 26.8 15.0 88 223-315 131-218 (323)
30 smart00400 ZnF_CHCC zinc finge 41.3 36 0.00077 24.4 3.2 25 320-344 30-54 (55)
31 smart00463 SMR Small MutS-rela 41.0 32 0.00069 26.4 3.2 24 333-356 7-30 (80)
32 COG1308 EGD2 Transcription fac 40.2 32 0.00069 29.3 3.1 23 324-346 86-108 (122)
33 PF01713 Smr: Smr domain; Int 38.7 35 0.00075 26.4 3.1 25 333-357 4-28 (83)
34 PF13798 PCYCGC: Protein of un 38.7 42 0.00091 29.9 3.8 33 329-368 126-158 (158)
35 PRK10581 geranyltranstransfera 34.3 3.7E+02 0.0079 26.4 10.2 112 233-357 153-276 (299)
36 COG1093 SUI2 Translation initi 30.4 88 0.0019 30.2 4.8 64 312-378 96-169 (269)
37 KOG1720 Protein tyrosine phosp 29.1 60 0.0013 30.5 3.3 27 320-346 159-186 (225)
38 PRK06369 nac nascent polypepti 29.1 59 0.0013 27.5 3.0 27 320-346 74-100 (115)
39 TIGR00264 alpha-NAC-related pr 27.9 65 0.0014 27.2 3.1 24 323-346 79-102 (116)
40 KOG2077 JNK/SAPK-associated pr 27.8 1.2E+02 0.0026 32.6 5.6 101 274-381 296-406 (832)
41 PF13189 Cytidylate_kin2: Cyti 27.7 35 0.00076 30.6 1.6 37 324-361 126-162 (179)
42 PF03701 UPF0181: Uncharacteri 27.6 92 0.002 22.3 3.3 44 308-353 3-46 (51)
43 COG5123 TOA2 Transcription ini 27.0 23 0.00049 29.0 0.2 41 6-55 1-41 (113)
44 PF01807 zf-CHC2: CHC2 zinc fi 26.0 74 0.0016 25.7 3.1 30 320-349 61-90 (97)
45 PF10397 ADSL_C: Adenylosuccin 24.6 1.1E+02 0.0023 23.7 3.7 30 325-354 8-37 (81)
46 TIGR03486 cas_csx13_C CRISPR-a 24.5 2.8E+02 0.006 24.6 6.4 67 148-217 8-74 (152)
47 PF05402 PqqD: Coenzyme PQQ sy 23.5 1.3E+02 0.0027 22.1 3.7 32 321-352 31-62 (68)
48 PF00348 polyprenyl_synt: Poly 22.0 6.8E+02 0.015 23.7 11.3 64 247-315 129-193 (260)
49 KOG1914 mRNA cleavage and poly 21.2 3.1E+02 0.0067 29.6 7.1 81 97-183 225-313 (656)
50 KOG3887 Predicted small GTPase 21.1 58 0.0013 31.4 1.7 185 138-339 86-315 (347)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=3.7e-119 Score=945.79 Aligned_cols=404 Identities=54% Similarity=0.921 Sum_probs=395.6
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc---CCCchHHHHHHhccCccccCcchhHHHhhHHhhhc
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEA 78 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~ 78 (411)
+.+||+||||||||||+++|||+|||||++||++||++++++ ++++|+++|++||++|||+++||||||+||++|++
T Consensus 134 ~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~ 213 (542)
T cd00684 134 LTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQ 213 (542)
T ss_pred hhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCC
Confidence 357999999999999999999999999999999999999986 78999999999999999999999999999999999
Q ss_pred CcccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHH
Q 015231 79 DNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAI 158 (411)
Q Consensus 79 ~~~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l 158 (411)
+ +++|++||||||+|||+||++||+||+++++||+++||.+++||+|+|+++||||++|++|||++|.+|+++||+++|
T Consensus 214 ~-~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l 292 (542)
T cd00684 214 E-DDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIAL 292 (542)
T ss_pred C-ccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Q 015231 159 ASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKA 237 (411)
Q Consensus 159 ~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a 237 (411)
+|++||+||.|||.+|++.||+|++|||+++++++|+|||+||.++++++++++.++.+ +++ +++.+++++|++++++
T Consensus 293 ~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a 371 (542)
T cd00684 293 ITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKA 371 (542)
T ss_pred HhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 666 8999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhh
Q 015231 238 YFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ 317 (411)
Q Consensus 238 ~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~ 317 (411)
|++||+|+++||+||++|||++|++|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+|+++|+
T Consensus 372 ~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~ 450 (542)
T cd00684 372 YLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEM 450 (542)
T ss_pred HHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHH
Confidence 9999999999999999999999999999999999999999999 999999998878999999999999999999999999
Q ss_pred ccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhhhhcccCCCCCCCChh
Q 015231 318 ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGK 396 (411)
Q Consensus 318 ~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~ 396 (411)
++|+++|+|.|||+|+|+|+|||+++++++|+++||++|++++++ +.+|++|+++++|++|+++++|+++||||.|++.
T Consensus 451 ~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~ 530 (542)
T cd00684 451 KRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGE 530 (542)
T ss_pred hcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHH
Confidence 999999999999999999999999999999999999999999997 7899999999999999999999999999999888
Q ss_pred HHHHHHhhhccC
Q 015231 397 TKDRIASLLVDP 408 (411)
Q Consensus 397 ~k~~i~~l~~~p 408 (411)
||++|++||++|
T Consensus 531 ~~~~i~~ll~~p 542 (542)
T cd00684 531 IKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHhcCC
Confidence 999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=6.1e-117 Score=947.33 Aligned_cols=401 Identities=26% Similarity=0.426 Sum_probs=385.0
Q ss_pred ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc-------CCCchHHHHHHhccCccccCcchhHHHhhHHh
Q 015231 3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRGMPRLEARQYISI 75 (411)
Q Consensus 3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~ 75 (411)
.+||+||||||||||+++|||+|||||+.||++||++.+++ ++++|++||+|||++|||+++||||||+||++
T Consensus 353 ~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~ 432 (784)
T PLN02279 353 LKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIEN 432 (784)
T ss_pred chhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHHHHHHHH
Confidence 48999999999999999999999999999999999998874 57889999999999999999999999999999
Q ss_pred hhcCccc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCC
Q 015231 76 YEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEP 143 (411)
Q Consensus 76 Y~~~~~~------------~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP 143 (411)
|+++ +. +|++||||||+|||+||++||+||++++|||+++|| .++||+|||++|||||++|++|||
T Consensus 433 Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~~fEP 510 (784)
T PLN02279 433 YAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAATLFSP 510 (784)
T ss_pred hccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHhhcCc
Confidence 9988 75 899999999999999999999999999999999999 699999999999999999999999
Q ss_pred CcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhh-hhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCc
Q 015231 144 KYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV-AANELPKYMQVCYFALLDVVKEMEDKLVN-KEPL 221 (411)
Q Consensus 144 ~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~-~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~ 221 (411)
++|.+|+++||.+++++++||+||+|||.||++.||+||+|||++ .++.+|+|||+||.+++++++|++.++.+ +|.
T Consensus 511 e~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr- 589 (784)
T PLN02279 511 ELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGR- 589 (784)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCc-
Confidence 999999999999999999999999999999999999999999998 56899999999999999999999998765 444
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~ 301 (411)
++.++++++|++++++|++||+|+.+||+||++|||+|+.+|+|+++++..+++++|.. +|+++++| .++|+|+++++
T Consensus 590 ~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~-l~eev~e~-~~~~~L~~l~s 667 (784)
T PLN02279 590 NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPK-LSEEVVDS-PELHKLYKLMS 667 (784)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCC-CCHHHHhC-cchhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988889999998 99999999 69999999999
Q ss_pred HHHHHhcCccchhhhhccCCCchHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCChhHHHHHHHHh
Q 015231 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQY--GVSEEEACNKIKGMVEIEWMNINEEIQDP--NHPPLQWLLPSLNLA 377 (411)
Q Consensus 302 ~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~--g~s~eeA~~~i~~~i~~~wk~ln~e~l~~--~~~p~~~~~~~~n~~ 377 (411)
.++||+|||+||++|+++||+ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +.+|++|++.++|++
T Consensus 668 ~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~~ln~a 746 (784)
T PLN02279 668 TCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDLFWKMS 746 (784)
T ss_pred HHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 999999999999999999998 9999999996 89999999999999999999999999964 579999999999999
Q ss_pred hhhhhhcccCCCCCCCChhHHHHHHhhhccCCCC
Q 015231 378 RMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411 (411)
Q Consensus 378 R~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~~ 411 (411)
|++++||++|||||.+ +||++|+++|++|||+
T Consensus 747 R~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 747 KVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 9999999999999964 6999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=3.3e-87 Score=714.77 Aligned_cols=362 Identities=23% Similarity=0.334 Sum_probs=330.2
Q ss_pred ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHh--c------CCCchHHHHHHhccCccccCcchhHHHhhHH
Q 015231 3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIPLHRGMPRLEARQYIS 74 (411)
Q Consensus 3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 74 (411)
.+|++||||||||||+++|||+|||||+.||++||++.++ + ++++|++||+|||++|||+++||||||+||+
T Consensus 399 ~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~ 478 (800)
T PLN02592 399 TQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIE 478 (800)
T ss_pred ccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHHH
Confidence 5799999999999999999999999999999999999864 2 3678999999999999999999999999999
Q ss_pred hhhcCcccc-------------cHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhcccc
Q 015231 75 IYEADNSTR-------------NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYF 141 (411)
Q Consensus 75 ~Y~~~~~~~-------------n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~ 141 (411)
+|+++ +++ |+.||||||+|||+||++||+||++++|||+++|| .++||||||++|||||++|++|
T Consensus 479 ~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve~Yfwa~~~~f 556 (800)
T PLN02592 479 QYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLLAYFLAAASIF 556 (800)
T ss_pred HhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHHHHHHHHHhhc
Confidence 99987 654 99999999999999999999999999999999999 5999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHH--------hhhhhhhccCCh------hHHHHHHHHHHH
Q 015231 142 EPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE--------RWEVVAANELPK------YMQVCYFALLDV 207 (411)
Q Consensus 142 eP~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~--------rWd~~~~~~lp~------~mk~~~~al~~~ 207 (411)
||++|.+|+++||.+++++++||+||+|||+||++.||++|+ |||.+.+++||+ |||+||.||+++
T Consensus 557 eP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mki~f~aLy~t 636 (800)
T PLN02592 557 EPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELVGLLLGT 636 (800)
T ss_pred CccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 899999999988 999999999999
Q ss_pred HHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHH-hcCCccccHH
Q 015231 208 VKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV-GLEDMAITKR 285 (411)
Q Consensus 208 ~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~-~~g~~~l~~e 285 (411)
+||++.++.+ +|. .+.++++++|.++++ +|..+|+ +|+|+..++.++++ .+|.. +|++
T Consensus 637 ineia~~a~~~qGr-~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~l~~g~~-lsee 696 (800)
T PLN02592 637 LNQLSLDALEAHGR-DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTINLTAGRS-LSEE 696 (800)
T ss_pred HHHHHHHHHHHhCc-cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHHHhcCCC-CCHH
Confidence 9999999888 444 699999999999998 6767676 45566667777776 56998 9999
Q ss_pred HHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCCCchHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcC-C-
Q 015231 286 ALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG-VSEEEACNKIKGMVEIEWMNINEEIQD-P- 362 (411)
Q Consensus 286 ~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~g-~s~eeA~~~i~~~i~~~wk~ln~e~l~-~- 362 (411)
+++ +|++.++++.+.||+||++|+++|+.. .| +++ +|.+++.+.|+.+++++.+.+++ .
T Consensus 697 ~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~eL~~lvl~~~~ 758 (800)
T PLN02592 697 LLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQELVQLVLQNSS 758 (800)
T ss_pred Hcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 764 799999999999999999999998841 23 455 89999999999999999999996 3
Q ss_pred CCCChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHHHHHhhhccCCC
Q 015231 363 NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 410 (411)
Q Consensus 363 ~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 410 (411)
+.+|++|++.+||++| +||.. ||+.| .+|+++|..++++||+
T Consensus 759 ~~vp~~cK~~f~~~~k---~fy~~--~~~~~-~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 759 DDIDPVIKQTFLMVAK---SFYYA--AYCDP-GTINYHIAKVLFERVA 800 (800)
T ss_pred CCCCHHHHHHHHHHHH---HHHHh--hcCCH-HHHHHHHHHHhCCCCC
Confidence 5699999999999999 45655 99998 5699999999999985
No 4
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=3.1e-51 Score=394.16 Aligned_cols=269 Identities=29% Similarity=0.391 Sum_probs=247.0
Q ss_pred HHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhc
Q 015231 87 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIY 166 (411)
Q Consensus 87 llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~~ 166 (411)
||+|||+|||.||++||+|++++++||+++|+..+.+.+|+|++.++|+.++++++|+.+..|+++||+++|+|++||.|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 79999999999999999999999999999999667777899999999999999999996666779999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 015231 167 DVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWF 245 (411)
Q Consensus 167 D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EA~W~ 245 (411)
|.+|+.++++.|++++.||++.....+|+++++++.++.++++++...+.+ .+...+..+++++|.+|++++.+|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998777889999999999999999999988877 2210255679999999999999999999
Q ss_pred hcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCCCchH
Q 015231 246 HAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSS 325 (411)
Q Consensus 246 ~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~ 325 (411)
..|++||++||+++|+.|+|+.+++.++++++|.. +++...+++..+|.+.++++.+++|+|||.|++||+++|+.+|+
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~ 239 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFA-LGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNL 239 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSC-HTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCc-cccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccH
Confidence 99999999999999999999999999999999776 77666666667788999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 015231 326 VECYVQQYGVSEEEACNKIKGMVEIEWMNIN 356 (411)
Q Consensus 326 V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln 356 (411)
|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 240 v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 240 VVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998
No 5
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=3.1e-48 Score=375.99 Aligned_cols=282 Identities=50% Similarity=0.901 Sum_probs=264.8
Q ss_pred hhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHH
Q 015231 101 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 180 (411)
Q Consensus 101 ~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ 180 (411)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976555999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhh
Q 015231 181 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 259 (411)
Q Consensus 181 ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~ 259 (411)
+++||+....+.+|+++++++.++.++++++...+.+ ++. .+..++++.|.++++++.+|++|+..|++||++||+.+
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~ 159 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGS-ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLEN 159 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Confidence 9999999888899999999999999999999988887 554 68999999999999999999999999999999999999
Q ss_pred hccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCCCchHHHHHHHhcCCCHHH
Q 015231 260 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 339 (411)
Q Consensus 260 ~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~g~s~ee 339 (411)
|+.|+|+++++.++++++|.. +|++.+.+.+...++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.+|
T Consensus 160 R~~~~g~~~~~~l~~~~~g~~-l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~e 238 (284)
T cd00868 160 RRVSIGYPPLLALSFLGMGDI-LPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEE 238 (284)
T ss_pred ceehhhHHHHHHHHHHHcCCC-CCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHH
Confidence 999999999999999999999 9985555568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhhhhc
Q 015231 340 ACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLY 384 (411)
Q Consensus 340 A~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~~R~~~~~Y 384 (411)
|++++.++++++|+++++.+.+. ++.|+.+++.+.|..|..+..|
T Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 239 ALEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999864 3678999999999999987665
No 6
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=3.1e-36 Score=295.72 Aligned_cols=249 Identities=17% Similarity=0.104 Sum_probs=216.2
Q ss_pred HHHH-HHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhcccc-CCHHHHHHHHHH
Q 015231 105 ELSE-ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY-GTLEELKLFTHA 181 (411)
Q Consensus 105 El~~-l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~-gt~eEl~~ft~a 181 (411)
+++. ...|.++.|+. .-+.+|+|+..++|+.++.++.|+++.+|+ ++|+++.|+|++||.||.. +++++.+.+++.
T Consensus 14 ~~~~~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~ 92 (303)
T cd00687 14 EAQDEYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTR 92 (303)
T ss_pred HHHHHHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHH
Confidence 4344 56699999775 345799999999998888888899999999 7789999999999999987 489999999998
Q ss_pred HHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhc
Q 015231 182 IERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENST 261 (411)
Q Consensus 182 i~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~ 261 (411)
+.++.......-|....++..++.++++++...+. + .+..++++.|.+++.++++|++|+.+|++||++||+++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~---~-~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~ 168 (303)
T cd00687 93 LLDILRGDGLDSPDDATPLEFGLADLWRRTLARMS---A-EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRR 168 (303)
T ss_pred HHhccCCCCCCCCCCCCHHHHHHHHHHHHhccCCC---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhh
Confidence 88754432111146778888999999988764432 2 5789999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhh-ccCCCchHHHHHHHhcCCCHHHH
Q 015231 262 MSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ-ERGDAPSSVECYVQQYGVSEEEA 340 (411)
Q Consensus 262 ~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~-~~G~~~n~V~~yMke~g~s~eeA 340 (411)
.|+|+.+++.++++++|.. +|+++.+. +...++++.++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|+|
T Consensus 169 ~~~g~~~~~~l~~~~~g~~-lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA 246 (303)
T cd00687 169 FNIGADPCLGLSEFIGGPE-VPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEA 246 (303)
T ss_pred hcccccccHHHHHHhcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHH
Confidence 9999999999999999998 99997765 455669999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 015231 341 CNKIKGMVEIEWMNINEEIQ 360 (411)
Q Consensus 341 ~~~i~~~i~~~wk~ln~e~l 360 (411)
++++.++++++++++.+..-
T Consensus 247 ~~~~~~~~~~~~~~f~~~~~ 266 (303)
T cd00687 247 ISVVRDMHNERITQFEELEA 266 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876553
No 7
>PLN02150 terpene synthase/cyclase family protein
Probab=100.00 E-value=1e-33 Score=230.90 Aligned_cols=95 Identities=40% Similarity=0.688 Sum_probs=92.5
Q ss_pred hccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhh-cccCCCCCCCCh
Q 015231 317 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL-YQNGDGYTNSTG 395 (411)
Q Consensus 317 ~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~-Y~~~D~~t~~~~ 395 (411)
++|||++|+|+|||||||+|+|||+++++++|+++||+||+|+++++++|.+++++++|+||+++|+ |++|||||.+++
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999 999999999888
Q ss_pred hHHHHHHhhhccCCCC
Q 015231 396 KTKDRIASLLVDPLPM 411 (411)
Q Consensus 396 ~~k~~i~~l~~~pi~~ 411 (411)
.+|++|++||++|||+
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.87 E-value=6.8e-22 Score=183.67 Aligned_cols=229 Identities=28% Similarity=0.346 Sum_probs=183.0
Q ss_pred hhhccccCCCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHH
Q 015231 135 WILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDK 214 (411)
Q Consensus 135 ~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~ 214 (411)
+++++++.|+.+..|..++++..|++++||++|..++..........+ .....|..+...+..+.+.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 455667788888999999999999999999999887655554443322 12345677777888888888887643
Q ss_pred HhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchh
Q 015231 215 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVP 294 (411)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p 294 (411)
.. + .+..++.+.|.+++.++..|+.|... ..||++||+.++..++ +.++......+++.. .++ ..+.+...
T Consensus 76 ~~---~-~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 146 (243)
T cd00385 76 GS---P-EALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLS-GGE--AELLEALR 146 (243)
T ss_pred CC---H-HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHh-CCC--HHHHHHHH
Confidence 22 2 47899999999999999999999877 8899999999999998 555666666766665 555 33345567
Q ss_pred HHHHHHHHHHHHhcCccchhhhhccC-CCchHHHHHHHhcCC------------CHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015231 295 KIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVECYVQQYGV------------SEEEACNKIKGMVEIEWMNINEEIQD 361 (411)
Q Consensus 295 ~i~~~~~~i~RL~NDi~S~~~E~~~G-~~~n~V~~yMke~g~------------s~eeA~~~i~~~i~~~wk~ln~e~l~ 361 (411)
.+....+.+.+|.||+.|+.+|.++| +..|++.++|+++|+ +.++|.+++..+++++++++++....
T Consensus 147 ~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (243)
T cd00385 147 KLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILS 226 (243)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88899999999999999999999986 678999999999999 88999999999999999999987765
Q ss_pred CCCCChhHHHHHHHHhh
Q 015231 362 PNHPPLQWLLPSLNLAR 378 (411)
Q Consensus 362 ~~~~p~~~~~~~~n~~R 378 (411)
....++++++.+.++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 227 LPDVPRALLALALNLYR 243 (243)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 33456677777776653
No 9
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.90 E-value=0.0004 Score=69.42 Aligned_cols=195 Identities=12% Similarity=0.112 Sum_probs=113.4
Q ss_pred CCCcchh-hHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCC
Q 015231 142 EPKYSTT-RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEP 220 (411)
Q Consensus 142 eP~~s~~-Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~ 220 (411)
.|..+.. +..++=+.++++++||.++.. .+++..|-+-+-. .. .... ++...+.+.+.++.... |.
T Consensus 78 y~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq-~Q~~-----p~L~~~~~~L~~~~~~f--gp- 144 (376)
T PF06330_consen 78 YPHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQ-PQKH-----PLLDGFASLLREMWRHF--GP- 144 (376)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T----SS-----HHHHHHHHHHHHHHTTS---H-
T ss_pred cCCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CC-CCCC-----HHHHHHHHHHHHHHHHc--ch-
Confidence 4766665 568888999999999998765 3666666654432 11 1111 33344444444433211 22
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhH---HH
Q 015231 221 LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK---II 297 (411)
Q Consensus 221 ~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~---i~ 297 (411)
++..-+.++--+++.+..-|.+.. +-.|.-..|-..-+.=+|...+.+...+- ... -|+. ..... .+
T Consensus 145 -f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiFP-k~~-fpe~-----~~~~~y~~AI 214 (376)
T PF06330_consen 145 -FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIFP-KAL-FPEV-----EYFIQYTPAI 214 (376)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT---TTT-S-TT-----TTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeecc-ccc-CChH-----HHHHHHHHHH
Confidence 567778888899999999887642 22354444555545555555555443331 121 2322 22333 33
Q ss_pred HHHHHHHHHhcCccchhhhhc-cCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 015231 298 RSSSLIARLDDDVHTYKVEQE-RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 359 (411)
Q Consensus 298 ~~~~~i~RL~NDi~S~~~E~~-~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~ 359 (411)
--....+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|.+.+.+..-++-+++.+-.
T Consensus 215 pdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~vL 277 (376)
T PF06330_consen 215 PDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRVL 277 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445568999999999977 78889999877777899999999998777777766665544
No 10
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.70 E-value=0.00092 Score=65.92 Aligned_cols=201 Identities=13% Similarity=0.053 Sum_probs=119.6
Q ss_pred hhhccccCCC--cchhhH-HHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHH
Q 015231 135 WILGVYFEPK--YSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEM 211 (411)
Q Consensus 135 ~~~~~~~eP~--~s~~Rl-~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~ 211 (411)
-++++.-+|- .|..=+ .++-..+.++++||.-|..+ +.++.|.+-+.. . .....| +-..+.+.+..+
T Consensus 69 T~v~~~~Y~w~~~skev~~~isi~~tY~~~lDD~~~e~~--~~m~~f~~dL~~--G-~~qkhP-----~l~~v~~~l~~~ 138 (357)
T cd00686 69 TIVGMVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDPY--PTMVNYFDDLQA--G-REQAHP-----WWALVNEHFPNV 138 (357)
T ss_pred HhhceEEeeccCCCHHHHHHHHHHHheeeEecccccccc--hHHHHHHHHHhc--C-CCCCCc-----HHHHHHHHHHHH
Confidence 4444422344 455433 55666788889999977543 355556554443 1 111223 222222222222
Q ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhc
Q 015231 212 EDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAI 291 (411)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~ 291 (411)
.... |. ++-.-+.++--+++.+..-|.. +.+..|.-.+|-...+.=+|.+-+.+... -|++.|.-..
T Consensus 139 lr~f--Gp--F~s~~IikSTLdFv~g~~iEq~--nf~~~p~A~~fP~ylR~ksGl~E~yA~Fi-------FPk~~FpE~~ 205 (357)
T cd00686 139 LRHF--GP--FCSLNLIRSTLDFFEGCWIEQY--NFGGFPGSHDYPQFLRRMNGLGHCVGASL-------WPKEQFNERS 205 (357)
T ss_pred HHHh--hh--hhHHHHHHHHHHHHHHHHHhhh--ccCCCCCCcccchHHHhccCCcceeEEEe-------cchhhCchHh
Confidence 2111 22 4556677888899999988865 34557777777777676666655544322 2333322112
Q ss_pred chhHHHHHHH---HHHHHhcCccchhhhhcc-CCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 015231 292 SVPKIIRSSS---LIARLDDDVHTYKVEQER-GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 358 (411)
Q Consensus 292 ~~p~i~~~~~---~i~RL~NDi~S~~~E~~~-G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e 358 (411)
.+..+..+.. ...-++|||.||=||--. ++..|.|.-|-+.+|+|..+|.+.+.+-.-.+-+++.+-
T Consensus 206 ~~~qi~~AIp~~~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~V 276 (357)
T cd00686 206 LFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (357)
T ss_pred hHHHhhHHHHHHHHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233322333 344588999999999854 456788988999999999999998877777777776554
No 11
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=95.56 E-value=0.84 Score=43.81 Aligned_cols=203 Identities=19% Similarity=0.201 Sum_probs=108.1
Q ss_pred hhhHHHHHHHHHHHhhhhhccccCCHHH----HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcc
Q 015231 147 TTRKFMTKIIAIASVIDDIYDVYGTLEE----LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLC 222 (411)
Q Consensus 147 ~~Rl~~ak~~~l~~~~DD~~D~~gt~eE----l~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~ 222 (411)
..|..+.-+-.+.-.+||+-|......+ ++-+-+++...-.+..+..|....++..++..+.++..
T Consensus 18 ~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~~---------- 87 (267)
T PF00494_consen 18 EKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRYG---------- 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCSH----------
T ss_pred HHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHHh----------
Confidence 4566566677888899999997764322 44444555442211111223335566666665553321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
.-++.+.+++.++.+ +.....++|++|+......++|....+.+..++.... . ++..+ .....+.
T Consensus 88 ---l~~~~l~~li~~~~~---dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~-~-~~~~~-------~a~~lG~ 152 (267)
T PF00494_consen 88 ---LPREPLLELIDGMEM---DLEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDP-D-EAARD-------AARALGR 152 (267)
T ss_dssp ---HHHHHHHHHHHHHHH---CTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTS-H-HHHHH-------HHHHHHH
T ss_pred ---hhHHHHHHHHHHhcc---cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc-h-hhHHH-------HHHHHHH
Confidence 344556777777753 3333558899999999998888877777666654322 1 12222 2334444
Q ss_pred HHHHhcCccchhhh-hccCC--CchHHHHHHHhcCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCC-Chh
Q 015231 303 IARLDDDVHTYKVE-QERGD--APSSVECYVQQYGVSEEEACNK----------IKGMVEIEWMNINEEIQDPNHP-PLQ 368 (411)
Q Consensus 303 i~RL~NDi~S~~~E-~~~G~--~~n~V~~yMke~g~s~eeA~~~----------i~~~i~~~wk~ln~e~l~~~~~-p~~ 368 (411)
.+-+.|=+...... ..+|- .+.- .|++||+|.++-.+. +..++..+...+.+..--...+ |..
T Consensus 153 alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~~ 229 (267)
T PF00494_consen 153 ALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPPR 229 (267)
T ss_dssp HHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--TT
T ss_pred HHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHh
Confidence 44444444444455 45564 3443 478899998865432 3455555554444433223446 444
Q ss_pred HHHHHHHHh
Q 015231 369 WLLPSLNLA 377 (411)
Q Consensus 369 ~~~~~~n~~ 377 (411)
+...+.-.+
T Consensus 230 ~~~~~~~~~ 238 (267)
T PF00494_consen 230 ARPAVAAAA 238 (267)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 444433333
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=93.57 E-value=1.7 Score=40.75 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhcc-ccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTM-SSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~-S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~ 301 (411)
....+.+...+++.+...+..|... ..||.++|++.... |++.....+..-...+. -+++.. ....++.+..+
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~lG 159 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG--ADDEQA---EALKDYGRALG 159 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--cCHHHH---HHHHHHHHHHH
Confidence 4566778889999999999888644 57899999999888 66665443333222222 223222 22356777888
Q ss_pred HHHHHhcCccchhhhh----------ccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 302 LIARLDDDVHTYKVEQ----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 302 ~i~RL~NDi~S~~~E~----------~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
+..-+.||+..+.... ++|.. +....++ .+.+.+..+++.+.+..
T Consensus 160 ~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 160 LAFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 8889999998876654 45544 5555555 55566666666655543
No 13
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=90.72 E-value=16 Score=35.01 Aligned_cols=198 Identities=17% Similarity=0.209 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHhhhhhccccCCH-H----HHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcc
Q 015231 148 TRKFMTKIIAIASVIDDIYDVYGTL-E----ELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLC 222 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~gt~-e----El~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~ 222 (411)
.|..+.-+-.+.-.+||+-|..... . .|+-+-+++..-.. +.-| -.++..++..+..+.. -
T Consensus 25 ~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~---~~~~--~~pv~~al~~~~~~~~------l--- 90 (265)
T cd00683 25 LRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYW---GGAP--THPVLRALADLARRYG------I--- 90 (265)
T ss_pred HHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHc---CCCC--CChHHHHHHHHHHHcC------C---
Confidence 4555555667777899999975532 2 23333333332111 1112 1256667766664221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
-++.+.+++.++..... ....||++|.......+.|....+++..++.+ . +++.. +.....+.
T Consensus 91 ----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~-~--~~~~~-------~~A~~lG~ 153 (265)
T cd00683 91 ----PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS-S--DEAAL-------ERARALGL 153 (265)
T ss_pred ----CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC-C--ChHHH-------HHHHHHHH
Confidence 12446667777753333 45678998888888777776655555455431 1 22211 22223333
Q ss_pred HHHHhcCccchhhhhccCC--CchHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q 015231 303 IARLDDDVHTYKVEQERGD--APSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWLL 371 (411)
Q Consensus 303 i~RL~NDi~S~~~E~~~G~--~~n~V~~yMke~g~s~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~ 371 (411)
..-|.|=+.......++|- .+.- -|.++|+|.++- ..-+..+++.+.+-+....-....+|....-
T Consensus 154 AlqltnilRdv~eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~ 230 (265)
T cd00683 154 ALQLTNILRDVGEDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSRF 230 (265)
T ss_pred HHHHHHHHHHHHHHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhHH
Confidence 3333333333333345554 3433 267889988663 2344555555555444433223457755544
Q ss_pred HHHHHhhh
Q 015231 372 PSLNLARM 379 (411)
Q Consensus 372 ~~~n~~R~ 379 (411)
.++-++.+
T Consensus 231 ~~~~~~~~ 238 (265)
T cd00683 231 CVRAAAML 238 (265)
T ss_pred HHHHHHHH
Confidence 44444433
No 14
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=90.26 E-value=18 Score=34.80 Aligned_cols=195 Identities=16% Similarity=0.162 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhh--h-hccCChhHHHHHHHHHHHHHHHHHHHhccCCcchH
Q 015231 148 TRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV--A-ANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCM 224 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~--~-~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~ 224 (411)
.|..+.-+-.+.-.+||+-|..++.++-+. .++.|... . ...-| -.++..++..++.... -
T Consensus 19 ~R~~~~alYaf~r~~d~i~D~~~~~~~~~~---~L~~w~~~l~~~~~g~~--~~pv~~al~~~~~~~~------l----- 82 (266)
T TIGR03465 19 RRRAMTALYAFCREVDDIVDEDSDPEVAQA---KLAWWRAEIDRLYAGAP--SHPVARALADPARRFD------L----- 82 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCchHHHH---HHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHcC------C-----
Confidence 455555677777889999997554433221 13334321 1 11112 2355566655544321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHH
Q 015231 225 YYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIA 304 (411)
Q Consensus 225 ~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~ 304 (411)
-++.+.+++.++.+. ......+|++|+......+.|....+++..++ .. ++.... .....+...
T Consensus 83 --~~~~~~~li~g~~~D---l~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg--~~--~~~~~~-------~a~~lG~Al 146 (266)
T TIGR03465 83 --PQEDFLEVIDGMEMD---LEQTRYPDFAELDLYCDRVAGAVGRLSARIFG--AT--DARTLE-------YAHHLGRAL 146 (266)
T ss_pred --CHHHHHHHHHHHHHH---cCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhC--CC--ChhHHH-------HHHHHHHHH
Confidence 123466677776533 23446789999888888777766665554443 22 222221 222233333
Q ss_pred HHhcCccchhhhhccCCC--chHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q 015231 305 RLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPS 373 (411)
Q Consensus 305 RL~NDi~S~~~E~~~G~~--~n~V~~yMke~g~s~e---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ 373 (411)
-|.|=+.......++|-+ +-- .|.++|+|.+ ...+-+..+++.+..-+.+..--...+|......+
T Consensus 147 qltnilRdv~eD~~~gR~ylP~~---~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~ 223 (266)
T TIGR03465 147 QLTNILRDVGEDARRGRIYLPAE---ELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAA 223 (266)
T ss_pred HHHHHHHHhHHHHhCCCeecCHH---HHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHH
Confidence 333322222333456653 332 3678899877 33455556666666555444322245776444444
Q ss_pred HHHh
Q 015231 374 LNLA 377 (411)
Q Consensus 374 ~n~~ 377 (411)
+-.+
T Consensus 224 ~~~~ 227 (266)
T TIGR03465 224 RAMA 227 (266)
T ss_pred HHHH
Confidence 3333
No 15
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=88.55 E-value=24 Score=33.95 Aligned_cols=108 Identities=23% Similarity=0.194 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHhhhhhcccc-CCHHH----HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcc
Q 015231 148 TRKFMTKIIAIASVIDDIYDVY-GTLEE----LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLC 222 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~-gt~eE----l~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~ 222 (411)
.|..+.-+-.|.=..||+-|.. ++.++ ++.+-+.+.. ....-| -.++..++.+++.+.. -
T Consensus 19 ~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~----~~~g~~--~~pv~~aL~~~~~~~~------l--- 83 (266)
T TIGR03464 19 LRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDA----IYSGEP--AAPVFVALARTVQRHG------L--- 83 (266)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHH----HhCCCC--CChHHHHHHHHHHHcC------C---
Confidence 4554455667778899999975 44443 2222222222 111112 2356667776665431 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhc
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL 277 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~ 277 (411)
- ++.+.+++.++.. .......+|++|.......++|....+++..++.
T Consensus 84 ~----~~~~~~li~~~~~---Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~ 131 (266)
T TIGR03464 84 P----IEPFLDLLDAFRQ---DVVVTRYATWAELLDYCRYSANPVGRLVLDLYGA 131 (266)
T ss_pred C----hHHHHHHHHHHHH---hccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 1 2344555555532 2234457799999998888888776666655543
No 16
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=86.91 E-value=22 Score=34.00 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
....+.+.....+.+-..+..|... ..||.++|++....-+|.....+....++--. .+++..+ ...++-+...+
T Consensus 109 ~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~~---~l~~~g~~lG~ 183 (259)
T cd00685 109 ALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEAE---ALKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHH---HHHHHHHHHHH
Confidence 4566777788888888888888654 57999999999877666664433322221111 2333322 23566677777
Q ss_pred HHHHhcCccchhhhh-----------ccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 303 IARLDDDVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 303 i~RL~NDi~S~~~E~-----------~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
..-+.||+..+.... ..|. .|...+|.- .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk-~T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGK-CTLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCC-chHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 778889887764432 1222 245444443 55666777777766554
No 17
>PLN02632 phytoene synthase
Probab=85.72 E-value=41 Score=33.67 Aligned_cols=196 Identities=14% Similarity=0.142 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHhhhhhccccCCH----HHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcch
Q 015231 148 TRKFMTKIIAIASVIDDIYDVYGTL----EELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCC 223 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~gt~----eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~ 223 (411)
.|..+.-+-.|.-.+||+=|..... ..|+..-+.+.. ..+.-|. .++..++.++..+.. - .
T Consensus 74 ~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~----~~~g~~~--~pv~~aL~~~~~~~~------L---~ 138 (334)
T PLN02632 74 RRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLED----LFDGRPY--DMLDAALADTVSKFP------L---D 138 (334)
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHH----HhCCCCC--ChHHHHHHHHHHHCC------C---C
Confidence 4444445667777889999965432 122222222222 1111121 245667766665432 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHH
Q 015231 224 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 303 (411)
Q Consensus 224 ~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i 303 (411)
++.+.+++.++.... .....+|++|+......+.|.--.+++..++.... .+.. .+.+ .+.....+..
T Consensus 139 ----~~~~~~li~g~~~Dl---~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~-~~~~-~~~~---~~~A~~lG~A 206 (334)
T PLN02632 139 ----IQPFRDMIEGMRMDL---VKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPE-SKAS-TESV---YNAALALGIA 206 (334)
T ss_pred ----hHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCc-cccc-hHHH---HHHHHHHHHH
Confidence 233566666765332 23457799999888877777666666555543221 1110 0000 1122223333
Q ss_pred HHHhcCccchhhhhccCCC--chHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHH
Q 015231 304 ARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWLLP 372 (411)
Q Consensus 304 ~RL~NDi~S~~~E~~~G~~--~n~V~~yMke~g~s~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~ 372 (411)
.-|.|=+........+|-+ +.- .|.++|+|+++- ..-+..++..+..-+.+..---..+|..+.-.
T Consensus 207 lQltNILRDv~eD~~~GRvYLP~e---~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r~~ 283 (334)
T PLN02632 207 NQLTNILRDVGEDARRGRVYLPQD---ELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASRWP 283 (334)
T ss_pred HHHHHHHHHHHHHHhCCceeCCHH---HHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhHHH
Confidence 3343333333344566653 322 368899998872 23344455555444433321123477655433
Q ss_pred H
Q 015231 373 S 373 (411)
Q Consensus 373 ~ 373 (411)
+
T Consensus 284 v 284 (334)
T PLN02632 284 V 284 (334)
T ss_pred H
Confidence 3
No 18
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=78.55 E-value=71 Score=31.79 Aligned_cols=86 Identities=9% Similarity=0.059 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh-cCCccccHHHHHhhcchhHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 301 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~p~i~~~~~ 301 (411)
....+.++..+++.+-+.+..+... ..+|.++|++.-..=+|.....+. ..| +--. .+++..+. .-++-+...
T Consensus 134 ~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~-~~ga~~ag-~~~~~~~~---l~~~G~~lG 207 (322)
T TIGR02749 134 VVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASS-KAAAVLSD-VPSQVAND---LYEYGKHLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHH-HHHHHHcC-cCHHHHHH---HHHHHHHHH
Confidence 4666777778888888777766433 347999999976655554433322 122 1112 45554433 356777788
Q ss_pred HHHHHhcCccchh
Q 015231 302 LIARLDDDVHTYK 314 (411)
Q Consensus 302 ~i~RL~NDi~S~~ 314 (411)
+..-+.||+..+.
T Consensus 208 ~aFQi~DDild~~ 220 (322)
T TIGR02749 208 LAFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHHhccCC
Confidence 8889999998875
No 19
>PLN02890 geranyl diphosphate synthase
Probab=75.48 E-value=80 Score=32.83 Aligned_cols=89 Identities=15% Similarity=0.052 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh-cCCccccHHHHHhhcchhHHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.....+.++...++.+-..+..|.. ...+|.++|++.-..-+|.....+...-+ .+. .+++..+.+ -.+-+..
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag--a~~~~~~~l---~~fG~~l 300 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG--QTAEVAVLA---FEYGRNL 300 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 3567788888999999998988864 34589999998766555544332221111 121 455554432 4667777
Q ss_pred HHHHHHhcCccchhhh
Q 015231 301 SLIARLDDDVHTYKVE 316 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~E 316 (411)
.+..-+.||+..+.-.
T Consensus 301 GlAFQI~DDiLD~~g~ 316 (422)
T PLN02890 301 GLAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8888889999887543
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=75.21 E-value=69 Score=33.21 Aligned_cols=86 Identities=12% Similarity=0.117 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
....+.++..+++.+-+.+..+.. +..+|.++|++....=+|.....+. ..| .+. .+++..+. ..++-+..
T Consensus 228 ~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~-~~gallag--a~~~~~~~---l~~fG~~L 300 (416)
T PLN02857 228 VIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAAST-KSAAIFSG--VDSSVKEQ---MYEYGKNL 300 (416)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 466677777788888777777754 3457999999987665554433322 222 121 45554433 35667777
Q ss_pred HHHHHHhcCccchhh
Q 015231 301 SLIARLDDDVHTYKV 315 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~ 315 (411)
.+..-+.||+..+..
T Consensus 301 GiAFQI~DDiLD~~~ 315 (416)
T PLN02857 301 GLAFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888888899988753
No 21
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=68.50 E-value=4.7 Score=37.08 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHhcCccchhhhhccCC-CchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 015231 305 RLDDDVHTYKVEQERGD-APSSVECYVQQYGVSEEEACNKIKGMVE 349 (411)
Q Consensus 305 RL~NDi~S~~~E~~~G~-~~n~V~~yMke~g~s~eeA~~~i~~~i~ 349 (411)
.|--++..+++..+.-. +.-+=-+.|+++|+|++||+++++++.-
T Consensus 129 ~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 129 ALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45556666666544322 2333346899999999999999998654
No 22
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=67.30 E-value=7 Score=28.30 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=21.9
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 015231 322 APSSVECYVQQYGVSEEEACNKIKGMVEI 350 (411)
Q Consensus 322 ~~n~V~~yMke~g~s~eeA~~~i~~~i~~ 350 (411)
+.-++.+.|..+|+|+++|.+.+++.-.+
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am~ 43 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAMR 43 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 45677789999999999999999886543
No 23
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=67.30 E-value=1.4e+02 Score=29.73 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
....+.+....++.+-..+..+.... +|.++|+++-..=+|.....+...-++--. .+++..+. .-.+-+...+
T Consensus 135 ~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~-~~~~~~~~---l~~~g~~lGl 208 (322)
T COG0142 135 AIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG-ADEELLEA---LEDYGRNLGL 208 (322)
T ss_pred HHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHhhH
Confidence 56677888888888888888876555 999999999766555544433222111111 33444443 3567778888
Q ss_pred HHHHhcCccchhhhh-ccCCC---------chHHHHHHHhcCCC
Q 015231 303 IARLDDDVHTYKVEQ-ERGDA---------PSSVECYVQQYGVS 336 (411)
Q Consensus 303 i~RL~NDi~S~~~E~-~~G~~---------~n~V~~yMke~g~s 336 (411)
+.-+.||+..+.-+. .-|.. .+...++.-+.+-.
T Consensus 209 aFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 209 AFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 889999998887642 22321 46666666655443
No 24
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=64.37 E-value=1.5e+02 Score=29.28 Aligned_cols=88 Identities=7% Similarity=0.008 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
....+.++..+++.+-..+..|.. +.-+|.++|++.-..-+|..+..+ ...|.-..+.+++..+. .-++-+...+
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~ag~~~~~~~~---l~~~g~~lG~ 204 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIASGANEAIVKK---LYWFGYYVGM 204 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 566777888888888888877743 345799999998766666543332 22221000134443332 3556677788
Q ss_pred HHHHhcCccchhh
Q 015231 303 IARLDDDVHTYKV 315 (411)
Q Consensus 303 i~RL~NDi~S~~~ 315 (411)
..-+.||+..+.-
T Consensus 205 aFQI~DDilD~~~ 217 (319)
T TIGR02748 205 SYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHccC
Confidence 8888999977643
No 25
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=63.53 E-value=6.6 Score=34.93 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=25.5
Q ss_pred ccCCCchHHHHHHHhc-CCCHHHHHHHHHH
Q 015231 318 ERGDAPSSVECYVQQY-GVSEEEACNKIKG 346 (411)
Q Consensus 318 ~~G~~~n~V~~yMke~-g~s~eeA~~~i~~ 346 (411)
.||-.+..|.||+-++ |.|.++|.+++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~ 148 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRK 148 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHh
Confidence 4667789999998886 9999999999987
No 26
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=59.51 E-value=8 Score=24.17 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.7
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 015231 328 CYVQQYGVSEEEACNKIK 345 (411)
Q Consensus 328 ~yMke~g~s~eeA~~~i~ 345 (411)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 489999999999766554
No 27
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.82 E-value=1e+02 Score=30.29 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCcc-c
Q 015231 204 LLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMA-I 282 (411)
Q Consensus 204 l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~-l 282 (411)
+.++++|-+..+.- .-..|-++-.+++.|+ +.+.+..-| |+.|+--+++++....-.|..+ -
T Consensus 229 ImGvIRECGGKMHl-----reg~fe~AhTDFFEAF----KNYDEsGsp--------RRttCLKYLVLANMLmkS~iNPFD 291 (440)
T KOG1464|consen 229 IMGVIRECGGKMHL-----REGEFEKAHTDFFEAF----KNYDESGSP--------RRTTCLKYLVLANMLMKSGINPFD 291 (440)
T ss_pred HHhHHHHcCCcccc-----ccchHHHHHhHHHHHH----hcccccCCc--------chhHHHHHHHHHHHHHHcCCCCCc
Confidence 34566666544433 1224667777788777 444444445 3333333334443333333321 2
Q ss_pred cHHHHHhhcchhHHHHHHHHHHHHh-cCccchhhhhccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015231 283 TKRALDWAISVPKIIRSSSLIARLD-DDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361 (411)
Q Consensus 283 ~~e~~~~~~~~p~i~~~~~~i~RL~-NDi~S~~~E~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~ 361 (411)
++|+-- .++.|+|+-.++++.... |||..|++=.+.... |. +.-.=-++|+..++++-..+..-...+
T Consensus 292 sQEAKP-yKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~-~I---------M~DpFIReh~EdLl~niRTQVLlkLIk 360 (440)
T KOG1464|consen 292 SQEAKP-YKNDPEILAMTNLVAAYQNNDIIEFERILKSNRS-NI---------MDDPFIREHIEDLLRNIRTQVLLKLIK 360 (440)
T ss_pred ccccCC-CCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhc-cc---------cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333221 367799999999888775 788776653322111 11 112223666777777766666666666
Q ss_pred C-CCCChhHHHHHHHH
Q 015231 362 P-NHPPLQWLLPSLNL 376 (411)
Q Consensus 362 ~-~~~p~~~~~~~~n~ 376 (411)
| +.+..|++.--+|+
T Consensus 361 PYt~i~Ipfis~~Lnv 376 (440)
T KOG1464|consen 361 PYTNIGIPFISKELNV 376 (440)
T ss_pred cccccCchhhHhhcCC
Confidence 6 56666777666654
No 28
>CHL00151 preA prenyl transferase; Reviewed
Probab=47.45 E-value=3e+02 Score=27.33 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh-cCCccccHHHHHhhcchhHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 301 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~p~i~~~~~ 301 (411)
....+.++...++.+-..+..+.. ..-+|.++|+..-..=+|.....+...-+ ++. .+++..+. .-.+-+...
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHH
Confidence 456677778888888776666532 33479999999755444443332221111 122 34443332 356777888
Q ss_pred HHHHHhcCccchhh
Q 015231 302 LIARLDDDVHTYKV 315 (411)
Q Consensus 302 ~i~RL~NDi~S~~~ 315 (411)
+..-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 88889999988754
No 29
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=42.16 E-value=3.6e+02 Score=26.79 Aligned_cols=88 Identities=14% Similarity=-0.014 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
....+.++...++.+-..+..|.. +.-+|.++|++....-+|.....+ ..+|.-..+.+++..+ ....+-+...+
T Consensus 131 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~-~~~ga~lag~~~~~~~---~l~~~g~~lG~ 205 (323)
T PRK10888 131 VLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAA-AQCSGILAGCTPEQEK---GLQDYGRYLGT 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHH---HHHHHHHHHHH
Confidence 466677778888888888877753 335899999998776555553332 2222101013444332 23567777888
Q ss_pred HHHHhcCccchhh
Q 015231 303 IARLDDDVHTYKV 315 (411)
Q Consensus 303 i~RL~NDi~S~~~ 315 (411)
..-+.||+..+..
T Consensus 206 aFQi~DD~ld~~~ 218 (323)
T PRK10888 206 AFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHhhcccC
Confidence 8888999988753
No 30
>smart00400 ZnF_CHCC zinc finger.
Probab=41.31 E-value=36 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.8
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKI 344 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i 344 (411)
|...++|..+|+-.|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 3445889999998999999999875
No 31
>smart00463 SMR Small MutS-related domain.
Probab=41.02 E-value=32 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Q 015231 333 YGVSEEEACNKIKGMVEIEWMNIN 356 (411)
Q Consensus 333 ~g~s~eeA~~~i~~~i~~~wk~ln 356 (411)
||++.+||+..+...++++++.-.
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~~ 30 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKGL 30 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999987643
No 32
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=40.18 E-value=32 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHH
Q 015231 324 SSVECYVQQYGVSEEEACNKIKG 346 (411)
Q Consensus 324 n~V~~yMke~g~s~eeA~~~i~~ 346 (411)
-=|.+.|.|.|+|.++|++.+..
T Consensus 86 eDIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 86 EDIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34789999999999999887654
No 33
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=38.74 E-value=35 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 333 YGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 333 ~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
||++.+||+..+...+.++++.-..
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~ 28 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIR 28 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHS
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999976543
No 34
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=38.66 E-value=42 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=25.4
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 015231 329 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQ 368 (411)
Q Consensus 329 yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 368 (411)
-|++.|.|..| |+..|++.||. .+.+||+-|+|
T Consensus 126 ~~~~~Gks~~e----IR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSPKE----IRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCHHH----HHHHHHHHHHh---CCCCCCCCCCC
Confidence 46778888655 88999999974 47788877765
No 35
>PRK10581 geranyltranstransferase; Provisional
Probab=34.29 E-value=3.7e+02 Score=26.43 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 015231 233 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 310 (411)
Q Consensus 233 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi 310 (411)
.++.+-..+..|.. ..+|.++|++.-..=+|.....+. ..| ++.. -+++..+. ..++-+...+..-+.||+
T Consensus 153 ~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~-~~gailag~-~~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 153 GMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAV-RLGALSAGD-KGRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred hhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHH-HHHHHHcCC-CcHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45666666666643 468999999886544443333221 222 1211 12233332 356777788888889999
Q ss_pred cchhhh-hccCC-----C----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 311 HTYKVE-QERGD-----A----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 311 ~S~~~E-~~~G~-----~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
..+.-. ..-|. . .|.+.++- .|.|.+.+++.++++.+.+..
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~------~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKSTYPALLG------LEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 987432 11121 1 25544432 478888888888888877654
No 36
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=30.41 E-value=88 Score=30.24 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=48.1
Q ss_pred chhhhhccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCChhHHHHHHHHhh
Q 015231 312 TYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNI----------NEEIQDPNHPPLQWLLPSLNLAR 378 (411)
Q Consensus 312 S~~~E~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~l----------n~e~l~~~~~p~~~~~~~~n~~R 378 (411)
.+++||+ .++.++..+...|.+.+||.++++--+.+.+=+. +.+.|....+|...+..+.++||
T Consensus 96 ~wk~~qk---a~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~ 169 (269)
T COG1093 96 EWKKEQK---ADKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIAR 169 (269)
T ss_pred HHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHH
Confidence 3455555 3688888898899999999999888777665433 33444455789899999999998
No 37
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=29.13 E-value=60 Score=30.45 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=21.8
Q ss_pred CCCchHHHHHH-HhcCCCHHHHHHHHHH
Q 015231 320 GDAPSSVECYV-QQYGVSEEEACNKIKG 346 (411)
Q Consensus 320 G~~~n~V~~yM-ke~g~s~eeA~~~i~~ 346 (411)
|-...+|.||| +++|+|..||++.++.
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44568899986 5679999999998875
No 38
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=29.07 E-value=59 Score=27.46 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=21.9
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKG 346 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~ 346 (411)
|-...-|...|.+.|+|.++|++.+.+
T Consensus 74 ~i~~edI~lv~~q~gvs~~~A~~AL~~ 100 (115)
T PRK06369 74 EIPEEDIELVAEQTGVSEEEARKALEE 100 (115)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 334577899999999999999887654
No 39
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=27.87 E-value=65 Score=27.22 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.3
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHH
Q 015231 323 PSSVECYVQQYGVSEEEACNKIKG 346 (411)
Q Consensus 323 ~n~V~~yMke~g~s~eeA~~~i~~ 346 (411)
..-|...|.+.|+|.++|++.+.+
T Consensus 79 ~eDI~lV~eq~gvs~e~A~~AL~~ 102 (116)
T TIGR00264 79 EDDIELVMKQCNVSKEEARRALEE 102 (116)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHH
Confidence 466899999999999999887654
No 40
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.80 E-value=1.2e+02 Score=32.59 Aligned_cols=101 Identities=14% Similarity=0.210 Sum_probs=60.8
Q ss_pred HHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCcc------chhhhhccCCCch--HHHHHHHhcCCCHHHHHHHHH
Q 015231 274 LVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH------TYKVEQERGDAPS--SVECYVQQYGVSEEEACNKIK 345 (411)
Q Consensus 274 ~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~------S~~~E~~~G~~~n--~V~~yMke~g~s~eeA~~~i~ 345 (411)
++|||.. + -..+..+..++..-+.+...-||+. +.+++.-||..-. -+..=|.+.---.||-++.++
T Consensus 296 llGMGrE-V----eNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 296 LLGMGRE-V----ENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred hhcchHH-H----HHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466654 3 3345667888877777777778775 4566666776522 222333333333455566666
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHH--HHHhhhhh
Q 015231 346 GMVEIEWMNINEEIQDPNHPPLQWLLPS--LNLARMMV 381 (411)
Q Consensus 346 ~~i~~~wk~ln~e~l~~~~~p~~~~~~~--~n~~R~~~ 381 (411)
....++.++-| +-..+.+|++-.++| ..|+|++.
T Consensus 371 ~ea~~ar~~~~--~~e~ddiPmAqRkRFTRvEMaRVLM 406 (832)
T KOG2077|consen 371 AEAEDARQKAK--DDEDDDIPMAQRKRFTRVEMARVLM 406 (832)
T ss_pred HHHHHHHHhhc--ccccccccHHHHhhhHHHHHHHHHH
Confidence 66665554421 123467999999988 78888863
No 41
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=27.72 E-value=35 Score=30.65 Aligned_cols=37 Identities=27% Similarity=0.195 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015231 324 SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQD 361 (411)
Q Consensus 324 n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~ 361 (411)
.=|.-.|+++|+|+++|.+.+.+ .+...+.+-+.+..
T Consensus 126 ~Rv~ri~~~~~~s~~~A~~~i~~-~D~~R~~~~~~~~~ 162 (179)
T PF13189_consen 126 FRVERIMEREGISEEEAEKLIKK-EDKRRRAYYKYYTG 162 (179)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHH-HHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 44666788899999999998887 66666666665553
No 42
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=27.64 E-value=92 Score=22.28 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=29.7
Q ss_pred cCccchhhhhccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 015231 308 DDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWM 353 (411)
Q Consensus 308 NDi~S~~~E~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk 353 (411)
||+-++..|+..--+ -=|+-+|. .|+|.-||+..|...|++.-+
T Consensus 3 ~~lp~LtHeeQQ~Av-E~Iq~LMa-qGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAV-ERIQELMA-QGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCHHHHHHHH-HHHHHHHH-hcccHHHHHHHHHHHHHHHHH
Confidence 666666666554222 22445563 799999999999988886554
No 43
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=27.05 E-value=23 Score=28.99 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=26.9
Q ss_pred hHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhcCCCchHHHHHHh
Q 015231 6 AKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHS 55 (411)
Q Consensus 6 ~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~a 55 (411)
+.|+.+|||-|-++--=|++||+-++ ...++|+|+..|-..
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~lis---------~g~isp~lam~vLet 41 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDELIS---------AGVISPNLAMHVLET 41 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHh---------cCCcCHHHHHHHHHH
Confidence 45899999999887555666666442 114677777665443
No 44
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=25.99 E-value=74 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=20.9
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKGMVE 349 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~~i~ 349 (411)
|...|+|..+|+-.|+|-.||++.+.++..
T Consensus 61 g~~Gd~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 61 GKGGDVIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp --EE-HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred CCCCcHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 344588999999889999999999887653
No 45
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=24.62 E-value=1.1e+02 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 015231 325 SVECYVQQYGVSEEEACNKIKGMVEIEWMN 354 (411)
Q Consensus 325 ~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ 354 (411)
.|...+-+.|++.|+|.+.|++...++|+.
T Consensus 8 ~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~ 37 (81)
T PF10397_consen 8 RVMLALAEKGLGRQEAHELVQEAAMEAWEN 37 (81)
T ss_dssp HHHHHHHHTTH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 455666788999999999999999999973
No 46
>TIGR03486 cas_csx13_C CRISPR-associated protein, Cas_csx13 family, C-terminal region. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or upstream gene; the N-terminal region is modelled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Probab=24.51 E-value=2.8e+02 Score=24.64 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc
Q 015231 148 TRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN 217 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~ 217 (411)
.|-+++.+...++-=||.-.-.-..+.|..+++..+.||..+ ++ --++.|..|+-.++..|..+...
T Consensus 8 grpW~a~F~~~~~~~~~f~~~~~er~gL~~M~~~~~~~~~e~-eq--~fiqa~HeAlr~~~~qI~~~tk~ 74 (152)
T TIGR03486 8 GRPWYANFAKPLKWKIDFKERKRERDELNKMIENSEIWDSEA-EQ--WFVQSFHEALRRIYAKIASHTKR 74 (152)
T ss_pred CCcHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHhcccHH-HH--HHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444454444433333221112344566666666565432 11 12445555666666666555443
No 47
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=23.55 E-value=1.3e+02 Score=22.07 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=22.9
Q ss_pred CCchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 015231 321 DAPSSVECYVQQYGVSEEEACNKIKGMVEIEW 352 (411)
Q Consensus 321 ~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~w 352 (411)
.+..++..+..+++++.+++.+.+...+.+-.
T Consensus 31 t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~ 62 (68)
T PF05402_consen 31 TVEEIVDALAEEYDVDPEEAEEDVEEFLEQLR 62 (68)
T ss_dssp -HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34577887888899999999888888877544
No 48
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=22.03 E-value=6.8e+02 Score=23.67 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=40.8
Q ss_pred cCCCCCHHHHHhhhccccchhHHHHHHHHh-cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhh
Q 015231 247 AKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKV 315 (411)
Q Consensus 247 ~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~ 315 (411)
.+..+|.++|++.-..-+|.........-+ ++. .+++..+. ..++-+...+..-+.||+..+..
T Consensus 129 ~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~afQi~DD~~d~~~ 193 (260)
T PF00348_consen 129 EDKDPTEEEYLEIIRLKTGSLFALACQLGAILAG--ADEEQIEA---LREFGRHLGIAFQIRDDLLDLFG 193 (260)
T ss_dssp TTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SGHHHHHH---HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccHHHHHHHHhhcchHHHHHHHHHHHHhcc--chhHHHHH---HHHHHHHHHHHHhhhhhhhhccC
Confidence 344889999999988766665433322211 122 34444333 36677788888888899887765
No 49
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=21.17 E-value=3.1e+02 Score=29.59 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=52.9
Q ss_pred HHHHhhHHHHHHHHHH--Hhh----hCCC-CCChhHHHHHHHHhh-hhhccccCCCcchhhHHHHHHHHHHHhhhhhccc
Q 015231 97 LLQALHRIELSEISRW--WKD----IDFA-TKLPFARDRLVECYF-WILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDV 168 (411)
Q Consensus 97 ~~Q~~hq~El~~l~rW--~~~----~~l~-~~l~~aRdr~~e~yf-~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~ 168 (411)
+=|.--.+|.+++++| |.+ .+|. ..-.---.|+...|= +...+.|.|+ +|=+....+.-+-|+++.
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe------iWy~~s~yl~~~s~l~~~ 298 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE------IWYDYSMYLIEISDLLTE 298 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHhhHHHHH
Confidence 3344455788888888 433 3442 112234567877776 5566667675 455677777777889999
Q ss_pred cCCHHHHHHHHHHHH
Q 015231 169 YGTLEELKLFTHAIE 183 (411)
Q Consensus 169 ~gt~eEl~~ft~ai~ 183 (411)
+|...+...||+-..
T Consensus 299 ~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAA 313 (656)
T ss_pred hcccccchhhHHHHH
Confidence 998888888887543
No 50
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.10 E-value=58 Score=31.44 Aligned_cols=185 Identities=17% Similarity=0.206 Sum_probs=93.5
Q ss_pred ccccCCCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHh-hh----------hhhhccCChhHHHHHHHHHH
Q 015231 138 GVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER-WE----------VVAANELPKYMQVCYFALLD 206 (411)
Q Consensus 138 ~~~~eP~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~r-Wd----------~~~~~~lp~~mk~~~~al~~ 206 (411)
..+|+|.|..+++ +.++.+|+|++|-+=|- .+.+..+..-+.| .. +..++.|++.-|+= +=.+
T Consensus 86 ~~~Fd~s~D~e~i-F~~~gALifvIDaQddy---~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie--tqrd 159 (347)
T KOG3887|consen 86 MDFFDPSFDYEMI-FRGVGALIFVIDAQDDY---MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE--TQRD 159 (347)
T ss_pred cccCCCccCHHHH-HhccCeEEEEEechHHH---HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh--hHHH
Confidence 3578999999865 57899999999876542 2333333333444 21 24567788776632 2223
Q ss_pred HHHHHHHHHhc-cC-----C----cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHH----
Q 015231 207 VVKEMEDKLVN-KE-----P----LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVE---- 272 (411)
Q Consensus 207 ~~~e~~~~~~~-~~-----~----~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~---- 272 (411)
+..+..+++.. |- + +..-+-.-+++.+.++-. -...||+|--|.+=.-+++..-.+..
T Consensus 160 I~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkL--------ipqLptLEnlLnif~s~S~ieKafLFDv~S 231 (347)
T KOG3887|consen 160 IHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKL--------IPQLPTLENLLNIFISNSKIEKAFLFDVLS 231 (347)
T ss_pred HHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHH--------hhhchhHHHHHHHHhhccchhhhhhhhhhh
Confidence 33333333322 10 0 001122334443333222 24578888777766555554322110
Q ss_pred -HHHhcCCccccHHHHHh-------------------hcchhHHHHHHHHHHHHhcCccchhhhhccCCCchHHHHHHHh
Q 015231 273 -ALVGLEDMAITKRALDW-------------------AISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQ 332 (411)
Q Consensus 273 -~~~~~g~~~l~~e~~~~-------------------~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke 332 (411)
++++....++.-..++- -..-+..-+.++.+.||.|+..-|-+|..++- ++-|.|++
T Consensus 232 KIYiaTDS~PVdmq~YElC~d~IDV~iDl~~iYg~~~~~~~s~~d~~s~svirL~n~~vlyLrev~k~L---ALV~i~re 308 (347)
T KOG3887|consen 232 KIYIATDSSPVDMQSYELCCDMIDVTIDLSSIYGLKEDGKGSDYDKESSSVIRLNNTTVLYLREVNKFL---ALVCIVRE 308 (347)
T ss_pred eeEEecCCCcchhHHHHHHHhhhheeeehHHhhCCCCCCCCCchhhhhhhhhhhcCceEEeHHHhhhhe---EEEEEEcc
Confidence 00100000000000100 01224455667778888888888888877653 23377887
Q ss_pred cCCCHHH
Q 015231 333 YGVSEEE 339 (411)
Q Consensus 333 ~g~s~ee 339 (411)
.|...+.
T Consensus 309 ~~~e~~g 315 (347)
T KOG3887|consen 309 DGFEKKG 315 (347)
T ss_pred CCccccc
Confidence 7765543
Done!