Query 015231
Match_columns 411
No_of_seqs 197 out of 869
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 4E-131 1E-135 1026.8 39.0 406 3-411 148-554 (554)
2 3m00_A Aristolochene synthase; 100.0 6E-130 2E-134 1017.0 38.0 406 2-411 142-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 3E-130 9E-135 1021.7 34.9 406 2-410 144-551 (555)
4 1n1b_A (+)-bornyl diphosphate 100.0 3E-125 1E-129 988.4 35.8 406 2-410 138-549 (549)
5 2ong_A 4S-limonene synthase; m 100.0 6E-125 2E-129 986.3 38.2 406 2-410 134-543 (543)
6 2j5c_A 1,8-cineole synthase; t 100.0 2E-124 8E-129 984.3 31.6 405 2-410 162-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 6E-122 2E-126 989.8 40.7 404 2-411 335-756 (764)
8 3sdr_A Alpha-bisabolene syntha 100.0 4E-122 1E-126 997.6 36.2 405 3-411 388-817 (817)
9 3s9v_A Abietadiene synthase, c 100.0 7E-122 2E-126 991.7 37.7 403 3-410 360-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 2.5E-84 8.6E-89 691.2 27.0 349 3-410 334-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.1E-53 3.8E-58 423.6 19.2 251 99-359 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2.2E-51 7.5E-56 400.4 22.3 242 101-359 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 8.1E-50 2.8E-54 393.2 22.3 244 99-359 25-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 2.1E-48 7E-53 392.8 21.6 243 109-359 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 4.6E-35 1.6E-39 298.6 18.9 246 104-359 129-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 7E-20 2.4E-24 183.2 15.1 248 107-379 33-294 (374)
17 3acx_A Dehydrosqualene synthas 91.6 8 0.00027 36.4 16.8 194 147-371 38-245 (293)
18 4hd1_A Squalene synthase HPNC; 88.7 16 0.00054 34.4 17.9 156 148-339 40-199 (294)
19 3ipi_A Geranyltranstransferase 86.3 3.7 0.00012 39.1 10.0 141 223-379 128-278 (295)
20 3lmd_A Geranylgeranyl pyrophos 84.8 8 0.00027 37.8 11.8 85 223-315 161-247 (360)
21 3oyr_A Trans-isoprenyl diphosp 77.7 35 0.0012 33.0 13.5 87 222-315 151-239 (345)
22 2ftz_A Geranyltranstransferase 77.4 31 0.0011 32.3 12.7 120 223-357 135-264 (284)
23 3ts7_A Geranyltranstransferase 76.8 27 0.00094 33.4 12.3 111 232-356 158-281 (324)
24 3mzv_A Decaprenyl diphosphate 76.1 51 0.0017 31.7 14.2 86 222-314 139-226 (341)
25 1rtr_A Geranyltranstransferase 75.0 18 0.00062 34.2 10.5 114 232-357 148-271 (301)
26 3m0g_A Farnesyl diphosphate sy 74.2 21 0.00072 33.8 10.7 111 232-357 147-269 (297)
27 3rmg_A Octaprenyl-diphosphate 73.3 28 0.00096 33.4 11.5 87 222-315 133-221 (334)
28 3p8r_A Geranyltranstransferase 71.6 20 0.00069 34.0 9.9 113 232-357 158-282 (302)
29 3p8l_A Geranyltranstransferase 71.0 28 0.00097 32.9 10.8 109 233-357 157-279 (302)
30 2h8o_A Geranyltranstransferase 70.9 33 0.0011 33.0 11.4 112 232-357 192-315 (335)
31 3lsn_A Geranyltranstransferase 70.7 36 0.0012 32.2 11.4 111 234-357 154-276 (304)
32 1wy0_A Geranylgeranyl pyrophos 70.5 43 0.0015 32.1 12.2 87 223-314 138-224 (342)
33 4f62_A Geranyltranstransferase 68.9 37 0.0013 32.4 11.1 111 233-357 152-275 (317)
34 3pko_A Geranylgeranyl pyrophos 62.4 1E+02 0.0034 29.5 12.9 85 223-314 144-230 (334)
35 4dhd_A Polyprenyl synthetase; 60.9 54 0.0018 31.7 10.7 88 223-314 133-231 (358)
36 3apz_A Geranyl diphosphate syn 57.7 79 0.0027 30.3 11.3 86 223-315 154-241 (348)
37 3uca_A Geranyltranstransferase 56.4 62 0.0021 30.9 10.1 113 232-357 180-304 (324)
38 3lom_A Geranyltranstransferase 56.3 87 0.003 29.7 11.1 112 233-356 159-282 (313)
39 3npk_A Geranyltranstransferase 54.6 1.2E+02 0.0041 28.4 11.7 113 231-357 144-266 (291)
40 3pde_A Farnesyl-diphosphate sy 53.6 73 0.0025 30.2 10.1 110 233-357 156-278 (309)
41 1rqj_A Geranyltranstransferase 53.2 82 0.0028 29.5 10.3 114 232-357 152-276 (299)
42 3nf2_A Putative polyprenyl syn 51.4 90 0.0031 30.1 10.5 85 223-314 144-230 (352)
43 2j1p_A Geranylgeranyl pyrophos 49.6 31 0.0011 32.4 6.7 108 233-357 161-272 (293)
44 3llw_A Geranyltranstransferase 49.0 48 0.0016 31.5 8.0 113 232-357 159-281 (311)
45 3vj8_A Squalene synthase; farn 48.5 1.9E+02 0.0064 27.6 16.3 224 148-391 38-284 (343)
46 1wmw_A Geranylgeranyl diphosph 47.0 1E+02 0.0035 29.2 10.1 84 223-314 131-218 (330)
47 1uby_A FPS, farnesyl diphospha 39.0 1.5E+02 0.0052 28.6 10.0 88 223-315 170-264 (367)
48 2qis_A Farnesyl pyrophosphate 35.8 1.9E+02 0.0064 28.0 10.0 87 223-314 177-270 (374)
49 3fau_A NEDD4-binding protein 2 35.5 30 0.001 25.7 3.4 23 333-355 6-28 (82)
50 2e8v_A Geranylgeranyl pyrophos 34.5 83 0.0028 30.1 7.2 86 223-315 132-221 (340)
51 3aqb_B Component B of hexapren 31.3 1.3E+02 0.0044 28.5 7.9 89 222-315 130-218 (325)
52 2q80_A Geranylgeranyl pyrophos 31.0 2.5E+02 0.0085 26.2 9.8 84 222-314 111-195 (301)
53 1tr8_A Conserved protein (MTH1 30.7 36 0.0012 26.9 3.2 27 320-346 63-89 (102)
54 3kra_B Geranyl diphosphate syn 29.0 67 0.0023 29.8 5.3 69 234-310 151-221 (274)
55 1v4e_A Octoprenyl-diphosphate 28.9 1.6E+02 0.0056 27.4 8.1 84 222-316 127-212 (299)
56 3tc1_A Octaprenyl pyrophosphat 28.1 3.5E+02 0.012 25.4 10.3 83 222-314 122-206 (315)
57 1yhl_A Farnesyl pyrophosphate 26.9 1.5E+02 0.0053 28.4 7.7 87 223-314 152-256 (362)
58 2ee7_A Sperm flagellar protein 26.0 54 0.0018 26.9 3.5 32 101-133 12-44 (127)
59 2azj_A Geranylgeranyl pyrophos 25.8 2.4E+02 0.0083 26.1 8.6 117 223-357 136-258 (289)
60 2j6y_A Phosphoserine phosphata 24.2 55 0.0019 26.3 3.2 47 7-57 12-71 (111)
61 1w53_A Phosphoserine phosphata 23.0 64 0.0022 24.6 3.2 47 7-57 12-71 (84)
62 2zqe_A MUTS2 protein; alpha/be 23.0 69 0.0024 24.0 3.4 21 333-353 10-30 (83)
63 3lk5_A Geranylgeranyl pyrophos 21.9 1.7E+02 0.0057 28.5 6.8 80 229-314 182-263 (380)
64 2d9i_A NEDD4-binding protein 2 21.0 70 0.0024 24.4 3.2 21 333-353 14-34 (96)
65 1d0q_A DNA primase; zinc-bindi 20.2 87 0.003 24.3 3.6 28 320-347 65-92 (103)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.7e-131 Score=1026.79 Aligned_cols=406 Identities=49% Similarity=0.869 Sum_probs=388.0
Q ss_pred ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhcCCCchHHHHHHhccCccccCcchhHHHhhHHhhhcCccc
Q 015231 3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNST 82 (411)
Q Consensus 3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~ 82 (411)
.+||+||||||||||+++|||+|||||+.||++||++++++++++|+++|+|||++|||+++||||||+||++|+++ ++
T Consensus 148 ~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~ 226 (554)
T 3g4d_A 148 TSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ES 226 (554)
T ss_dssp HHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TT
T ss_pred ccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-cc
Confidence 58999999999999999999999999999999999999888888999999999999999999999999999999999 99
Q ss_pred ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHHhh
Q 015231 83 RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVI 162 (411)
Q Consensus 83 ~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~~~ 162 (411)
+|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++++
T Consensus 227 ~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tvi 306 (554)
T 3g4d_A 227 HNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIV 306 (554)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHH
Q 015231 163 DDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVE 241 (411)
Q Consensus 163 DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~E 241 (411)
||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++.+ |+. ++++|++++|++++++|++|
T Consensus 307 DD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~E 385 (554)
T 3g4d_A 307 DDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVE 385 (554)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 776 78999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCC
Q 015231 242 AKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD 321 (411)
Q Consensus 242 A~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~ 321 (411)
|+|+++||+||+||||+||++|+|++++++++++|||+. +|+++++|+.++|+|+++++.|+||+|||+||++|+++|+
T Consensus 386 AkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~ 464 (554)
T 3g4d_A 386 AKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRRED 464 (554)
T ss_dssp HHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCC
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHHHH
Q 015231 322 APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRI 401 (411)
Q Consensus 322 ~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i 401 (411)
++|+|+|||+|||+|+|||+++++++|+++||+||+++++++++|++|+++++|++|++++||++|||||.|+.+||++|
T Consensus 465 van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i 544 (554)
T 3g4d_A 465 DCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGI 544 (554)
T ss_dssp CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHH
T ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999988899999
Q ss_pred HhhhccCCCC
Q 015231 402 ASLLVDPLPM 411 (411)
Q Consensus 402 ~~l~~~pi~~ 411 (411)
++||++|||+
T Consensus 545 ~~ll~~Pi~l 554 (554)
T 3g4d_A 545 TSLLIEPIAL 554 (554)
T ss_dssp HHHHTCCCCC
T ss_pred HHHhcCCCCC
Confidence 9999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=5.8e-130 Score=1016.99 Aligned_cols=406 Identities=44% Similarity=0.831 Sum_probs=392.8
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhcCCCchHHHHHHhccCccccCcchhHHHhhHH-hhhcCc
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADN 80 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~-~Y~~~~ 80 (411)
+.+||+||||||||||+++|||+|||||+.||++||++++++++++|+++|+|||++|||+++||+|||+||+ +|+++
T Consensus 142 l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~- 220 (550)
T 3m00_A 142 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKE- 220 (550)
T ss_dssp GGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGC-
T ss_pred chhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccc-
Confidence 4689999999999999999999999999999999999998888889999999999999999999999999999 99999
Q ss_pred ccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHH
Q 015231 81 STRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIAS 160 (411)
Q Consensus 81 ~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~ 160 (411)
+++|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++
T Consensus 221 ~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~t 300 (550)
T 3m00_A 221 QSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMIS 300 (550)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHH
Q 015231 161 VIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYF 239 (411)
Q Consensus 161 ~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l 239 (411)
++||+||+|||+|||+.||+||+|||++++++||+|||+||.+++++++|++.++.+ |+. ++++|++++|+++++||+
T Consensus 301 viDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl 379 (550)
T 3m00_A 301 IVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEIVRNYN 379 (550)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888 776 789999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhcc
Q 015231 240 VEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQER 319 (411)
Q Consensus 240 ~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~ 319 (411)
+||+|+++||+||+||||+||++|+|++++++++++|+ +. +|+++++|+.++|+|++++++|+||+|||+||++|++|
T Consensus 380 ~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~r 457 (550)
T 3m00_A 380 VESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSR 457 (550)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHT
T ss_pred HHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CC-CcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhc
Confidence 99999999999999999999999999999999999888 77 99999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccC-CCCCCCChhHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTK 398 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t~~~~~~k 398 (411)
|+++|+|+|||||+|+|+|||++++++||+++||+||+++++++++|+||+++++|++|++++||++| ||||.|+++||
T Consensus 458 G~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k 537 (550)
T 3m00_A 458 GQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLK 537 (550)
T ss_dssp TCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHH
T ss_pred CCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999998 99999977899
Q ss_pred HHHHhhhccCCCC
Q 015231 399 DRIASLLVDPLPM 411 (411)
Q Consensus 399 ~~i~~l~~~pi~~ 411 (411)
++|++||++|||+
T Consensus 538 ~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 538 PHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHhhCCCCC
Confidence 9999999999996
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.6e-130 Score=1021.70 Aligned_cols=406 Identities=39% Similarity=0.688 Sum_probs=393.5
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHh-cCCCchHHHHHHhccCccccCcchhHHHhhHHhhhcCc
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS-HLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADN 80 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~ 80 (411)
+.+||+||||||||||+++|||+|||||++||++||++.+. +++++|+++|+|||++|||+++||||||+||++|+++
T Consensus 144 l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~- 222 (555)
T 3n0f_A 144 LKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK- 222 (555)
T ss_dssp GGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC-
T ss_pred hhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc-
Confidence 46899999999999999999999999999999999999775 5688899999999999999999999999999999999
Q ss_pred ccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHH
Q 015231 81 STRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIAS 160 (411)
Q Consensus 81 ~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~ 160 (411)
+++|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++|||+||.+|+++||+++|++
T Consensus 223 ~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~t 302 (555)
T 3n0f_A 223 EDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVT 302 (555)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHH
Q 015231 161 VIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYF 239 (411)
Q Consensus 161 ~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l 239 (411)
++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.++.+ ++. +++++++++|+++++||+
T Consensus 303 viDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~-~~~~~l~~~w~~l~~ayl 381 (555)
T 3n0f_A 303 IIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE-NILPYLTKAWADLCNAFL 381 (555)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888 665 799999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhcc
Q 015231 240 VEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQER 319 (411)
Q Consensus 240 ~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~ 319 (411)
+||+|+++||+||+||||+||.+|+|+++++++++++||+. +|+++++|+.++|+|++++++|+||+|||+||++|+++
T Consensus 382 ~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~r 460 (555)
T 3n0f_A 382 QEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIAR 460 (555)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSS-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCC-CCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKD 399 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~ 399 (411)
|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++++++++|++|+++++|+||++++||++|||||.|+.+||+
T Consensus 461 G~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~ 540 (555)
T 3n0f_A 461 GETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRK 540 (555)
T ss_dssp TCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHH
T ss_pred CCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999778999
Q ss_pred HHHhhhccCCC
Q 015231 400 RIASLLVDPLP 410 (411)
Q Consensus 400 ~i~~l~~~pi~ 410 (411)
+|++||++|||
T Consensus 541 ~i~~ll~~Pi~ 551 (555)
T 3n0f_A 541 RVLSVITEPIL 551 (555)
T ss_dssp HHHHHTTSCCC
T ss_pred HHHHHHhcCCC
Confidence 99999999997
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.8e-125 Score=988.45 Aligned_cols=406 Identities=38% Similarity=0.693 Sum_probs=383.4
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc---C-CCchHHHHHHhccCccccCcchhHHHhhHHhhh
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYE 77 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~ 77 (411)
+++||+||||||||||+++|||+|||||++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|+
T Consensus 138 l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~ 217 (549)
T 1n1b_A 138 LAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYA 217 (549)
T ss_dssp GGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999875 5 778999999999999999999999999999999
Q ss_pred cCcccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHH
Q 015231 78 ADNSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIA 157 (411)
Q Consensus 78 ~~~~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~ 157 (411)
++ +++|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++
T Consensus 218 ~~-~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~ 296 (549)
T 1n1b_A 218 RR-PDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIV 296 (549)
T ss_dssp HC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHH
T ss_pred cc-ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999877999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHH
Q 015231 158 IASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVK 236 (411)
Q Consensus 158 l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~ 236 (411)
|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+ +++ +++++++++|+++++
T Consensus 297 l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ 375 (549)
T 1n1b_A 297 LATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVE 375 (549)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888 666 799999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHH-HHhhcchhHHHHHHHHHHHHhcCccchhh
Q 015231 237 AYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRA-LDWAISVPKIIRSSSLIARLDDDVHTYKV 315 (411)
Q Consensus 237 a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~-~~~~~~~p~i~~~~~~i~RL~NDi~S~~~ 315 (411)
+|++||+|+.+||+||+||||++|.+|+|+++++++++++||.. +|+++ ++|+.++|++++++++++||+|||+||++
T Consensus 376 ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~ 454 (549)
T 1n1b_A 376 AYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYF 454 (549)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhh
Confidence 99999999999999999999999999999999999999999999 99999 99999999999999999999999999999
Q ss_pred hhccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCCh
Q 015231 316 EQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTG 395 (411)
Q Consensus 316 E~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~ 395 (411)
|+++|+++|+|+|||+|||+|+|||+++++++|+++||+||+++++++++|++|+++++|++|++++||++|||||.|++
T Consensus 455 E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~ 534 (549)
T 1n1b_A 455 ELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHS 534 (549)
T ss_dssp -----CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----C
T ss_pred hhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999987
Q ss_pred hHHHHHHhhhccCCC
Q 015231 396 KTKDRIASLLVDPLP 410 (411)
Q Consensus 396 ~~k~~i~~l~~~pi~ 410 (411)
+||++|++||++|||
T Consensus 535 ~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 535 KTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCCC
Confidence 899999999999997
No 5
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=6.1e-125 Score=986.32 Aligned_cols=406 Identities=38% Similarity=0.650 Sum_probs=397.0
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc-C-CCchHHHHHHhccCccccCcchhHHHhhHHhhhcC
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEAD 79 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~ 79 (411)
+++||+||||||||||+++|||+|||||++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|+++
T Consensus 134 l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~ 213 (543)
T 2ong_A 134 LSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR 213 (543)
T ss_dssp GGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTC
T ss_pred hhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccC
Confidence 468999999999999999999999999999999999999886 5 78899999999999999999999999999999999
Q ss_pred cccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHH
Q 015231 80 NSTRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIA 159 (411)
Q Consensus 80 ~~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~ 159 (411)
+++|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++|+
T Consensus 214 -~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~li 292 (543)
T 2ong_A 214 -PDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALI 292 (543)
T ss_dssp -SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred HhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHH
Q 015231 160 SVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAY 238 (411)
Q Consensus 160 ~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~ 238 (411)
|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+ +++ +++++++++|++++++|
T Consensus 293 tviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ay 371 (543)
T 2ong_A 293 TVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGV-NVIPYLRQSWVDLADKY 371 (543)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 666 89999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhc
Q 015231 239 FVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQE 318 (411)
Q Consensus 239 l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~ 318 (411)
++||+|+.+||+||+||||++|.+|+|+++++++++++||.. +|+++++|+.++|++++++++++||+|||+||++|++
T Consensus 372 l~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~-~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~ 450 (543)
T 2ong_A 372 MVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVS 450 (543)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSC-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccc
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCChhHHHHHHHHhhhhhhhcccCCCCCCCChhH
Q 015231 319 RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI-QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKT 397 (411)
Q Consensus 319 ~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~-l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~ 397 (411)
+|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++ ++++++|++|+++++|++|+++++|+++||||.|+++|
T Consensus 451 rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~ 530 (543)
T 2ong_A 451 RGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPII 530 (543)
T ss_dssp TSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTH
T ss_pred cCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHH
Confidence 99999999999999999999999999999999999999999 99889999999999999999999999999999998789
Q ss_pred HHHHHhhhccCCC
Q 015231 398 KDRIASLLVDPLP 410 (411)
Q Consensus 398 k~~i~~l~~~pi~ 410 (411)
|++|++||++|||
T Consensus 531 k~~i~~l~~~pi~ 543 (543)
T 2ong_A 531 HQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHTSCC-
T ss_pred HHHHHHHhccCCC
Confidence 9999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=2.3e-124 Score=984.29 Aligned_cols=405 Identities=38% Similarity=0.646 Sum_probs=375.7
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhcC-CCchHHHHHHhccCccccCcchhHHHhhHHhhhcCc
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHL-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADN 80 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~ 80 (411)
+++||+||||||||||+++|||+|||||++||++||++++.++ +++|+++|+|||++|||+++||||||+||++|+++
T Consensus 162 l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~- 240 (569)
T 2j5c_A 162 LVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR- 240 (569)
T ss_dssp GGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC-
T ss_pred hhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC-
Confidence 4689999999999999999999999999999999999988776 78899999999999999999999999999999999
Q ss_pred ccccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhHHHHHHHHHHH
Q 015231 81 STRNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIAS 160 (411)
Q Consensus 81 ~~~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl~~ak~~~l~~ 160 (411)
+++|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|++|||++|.+|+++||+++|+|
T Consensus 241 ~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~lit 320 (569)
T 2j5c_A 241 PDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVT 320 (569)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred hhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHH
Q 015231 161 VIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYF 239 (411)
Q Consensus 161 ~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l 239 (411)
++||+||+|||++|++.||+||+|||+++++++|+|||+||.+++++++|++.++.+ +++ +++++++++|++++++|+
T Consensus 321 viDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl 399 (569)
T 2j5c_A 321 TIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLIESYL 399 (569)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 666 899999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhcc
Q 015231 240 VEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQER 319 (411)
Q Consensus 240 ~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~ 319 (411)
+||+|+.+||+||+||||+||.+|+|+++++++++++||.. +|+++++|+.++|++++++++++||+|||+||++|+++
T Consensus 400 ~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~-lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~r 478 (569)
T 2j5c_A 400 IEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDS-IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVER 478 (569)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSS-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhccc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhhhhcccC-CCCCCCChhHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTK 398 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t~~~~~~k 398 (411)
|+++|+|+|||+|+|+|+|||+++++++|+++||+||+++++ +++|++|+++++|++|+++++|+++ ||||.|+++||
T Consensus 479 G~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k 557 (569)
T 2j5c_A 479 GDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVN 557 (569)
T ss_dssp ---CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHH
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHH
Confidence 999999999999999999999999999999999999999999 8899999999999999999999999 99999987899
Q ss_pred HHHHhhhccCCC
Q 015231 399 DRIASLLVDPLP 410 (411)
Q Consensus 399 ~~i~~l~~~pi~ 410 (411)
++|++||++|||
T Consensus 558 ~~i~~ll~~pi~ 569 (569)
T 2j5c_A 558 KMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHhccCCC
Confidence 999999999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=6e-122 Score=989.85 Aligned_cols=404 Identities=30% Similarity=0.554 Sum_probs=383.1
Q ss_pred cccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHh---cCCCchHHHHHHhccCccccCcchhHHHhhHHhhhc
Q 015231 2 LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS---HLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEA 78 (411)
Q Consensus 2 l~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~ 78 (411)
+.+||+||||||||||+++|||+|||||++||++||++++. .++++|++||+|||++|||+++||||||+||++|++
T Consensus 335 ~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~ 414 (764)
T 3p5p_A 335 THVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDD 414 (764)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCT
T ss_pred cccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999886 357889999999999999999999999999999998
Q ss_pred Cccc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcc
Q 015231 79 DNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYS 146 (411)
Q Consensus 79 ~~~~------------~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s 146 (411)
+ +. +|++||||||||||+||++||+||++++||||++|+ .++||+|||++|||||++| |||+||
T Consensus 415 ~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s 490 (764)
T 3p5p_A 415 N-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSAT--FEPEYS 490 (764)
T ss_dssp T-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGH
T ss_pred c-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHh--CCccch
Confidence 8 65 499999999999999999999999999999999999 6999999999999999999 999999
Q ss_pred hhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCcchHH
Q 015231 147 TTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMY 225 (411)
Q Consensus 147 ~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~~~~~ 225 (411)
.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.++.+ +|. ++++
T Consensus 491 ~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~-~~~~ 569 (764)
T 3p5p_A 491 ATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGR-DMLA 569 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCc-chHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887 454 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHH
Q 015231 226 YAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIAR 305 (411)
Q Consensus 226 ~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~R 305 (411)
|++++|++++++|++||+|+++||+||+||||+||++|+|+++++..+++++|+. +|+++++|+..+|+|+++++.|+|
T Consensus 570 yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~l~~~~~~I~R 648 (764)
T 3p5p_A 570 HIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPSNMFELVSLSWR 648 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSC-CCGGGHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCC-CcHHHHhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999997777999999999999
Q ss_pred HhcCccchhhhhccCCCchHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCChhHHHHHHHHhhhhhhh
Q 015231 306 LDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQD-PNHPPLQWLLPSLNLARMMVVL 383 (411)
Q Consensus 306 L~NDi~S~~~E~~~G~~~n~V~~yMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~-~~~~p~~~~~~~~n~~R~~~~~ 383 (411)
|+|||+||++|+++|+++|+|+|||||| |+|+|||+++++++|+++||+||+++++ ++.+|++|+++++|++|++++|
T Consensus 649 L~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~ 728 (764)
T 3p5p_A 649 LTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIF 728 (764)
T ss_dssp HHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHH
T ss_pred hhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 8999999999999999999999999997 7889999999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHhhhccCCCC
Q 015231 384 YQNGDGYTNSTGKTKDRIASLLVDPLPM 411 (411)
Q Consensus 384 Y~~~D~~t~~~~~~k~~i~~l~~~pi~~ 411 (411)
|+++||||.|+.+||++|++||++||++
T Consensus 729 Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 729 YKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp SCC-------CCCHHHHHHHHHTCCCCC
T ss_pred hcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999777999999999999984
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=3.5e-122 Score=997.58 Aligned_cols=405 Identities=35% Similarity=0.643 Sum_probs=384.1
Q ss_pred ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc--------CCCchHHHHHHhccCccccCcchhHHHhhHH
Q 015231 3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRGMPRLEARQYIS 74 (411)
Q Consensus 3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 74 (411)
.+||+||||||||||+++|||+|||||++||++||++++.+ ++++|++||+|||++|||+++||||||+||+
T Consensus 388 ~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~ 467 (817)
T 3sdr_A 388 NKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQ 467 (817)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHH
Confidence 47999999999999999999999999999999999998763 2477999999999999999999999999999
Q ss_pred hhhcCccc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccC
Q 015231 75 IYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFE 142 (411)
Q Consensus 75 ~Y~~~~~~------------~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~e 142 (411)
+|+++ +. +|++||||||||||+||++||+||++++||||++|+ .++||+|||++|||||++|++||
T Consensus 468 ~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~fe 545 (817)
T 3sdr_A 468 VYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYE 545 (817)
T ss_dssp TCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHHHHHHHTTSCC
T ss_pred HhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHHhccC
Confidence 99988 65 499999999999999999999999999999999999 69999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCc
Q 015231 143 PKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPL 221 (411)
Q Consensus 143 P~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~ 221 (411)
|+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.++.+ ++.
T Consensus 546 P~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~- 624 (817)
T 3sdr_A 546 PQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGR- 624 (817)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred ccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888 555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhH-HHHHHHHhcCCccccHHHHHhhc--chhHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM-LAVEALVGLEDMAITKRALDWAI--SVPKIIR 298 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~-~~~~~~~~~g~~~l~~e~~~~~~--~~p~i~~ 298 (411)
++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.++++++|+. +|+++++|+. ++|+|++
T Consensus 625 ~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~-lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 625 ELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQL-LSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCC-CCHHHHHTTCCTTSCSHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCC-CCHHHHhcccccchHHHHH
Confidence 79999999999999999999999999999999999999999999999 888889999999 9999999976 4569999
Q ss_pred HHHHHHHHhcCccchhhhhccCCCchHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHh
Q 015231 299 SSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLA 377 (411)
Q Consensus 299 ~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~ 377 (411)
+++.|+||+|||+||++|++||+++|+|+|||||| |+|+|||+++++++|+++||+||+++++++.+|++|+++++|++
T Consensus 704 ~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~a 783 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEET 783 (817)
T ss_dssp HHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 79999999999999999999999999998899999999999999
Q ss_pred hhhhhhcccCCCCCCCChhHHHHHHhhhccCCCC
Q 015231 378 RMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 411 (411)
Q Consensus 378 R~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~~ 411 (411)
|++++||++|||||.|+.+||++|++||++|||+
T Consensus 784 R~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 784 RVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999778999999999999986
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=7.1e-122 Score=991.73 Aligned_cols=403 Identities=32% Similarity=0.585 Sum_probs=385.5
Q ss_pred ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc--------CCCchHHHHHHhccCccccCcchhHHHhhHH
Q 015231 3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRGMPRLEARQYIS 74 (411)
Q Consensus 3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 74 (411)
.+||+||||||||||+++|||+|||||++||++||++++.+ ++++|++||+|||++|||+++||||||+||+
T Consensus 360 ~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~ 439 (785)
T 3s9v_A 360 QRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIE 439 (785)
T ss_dssp CCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred cccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccCchHHHHHHHHH
Confidence 58999999999999999999999999999999999998753 5678999999999999999999999999999
Q ss_pred hhhcCccc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhccccC
Q 015231 75 IYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFE 142 (411)
Q Consensus 75 ~Y~~~~~~------------~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~e 142 (411)
+|+++ +. +|++||||||||||+||++||+||++++||||++|+ .++||+|||++|||||++|++||
T Consensus 440 ~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~fe 517 (785)
T 3s9v_A 440 NYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFE 517 (785)
T ss_dssp HCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHHHHHHHHHSCS
T ss_pred Hhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHHHHHHHHhcCC
Confidence 99988 65 399999999999999999999999999999999999 69999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-cCCc
Q 015231 143 PKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPL 221 (411)
Q Consensus 143 P~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~-~~~~ 221 (411)
|+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+++++++|++.++.+ +|.
T Consensus 518 P~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~- 596 (785)
T 3s9v_A 518 PEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGR- 596 (785)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887 454
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~ 301 (411)
++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+. +|+++++|+..+|+|+++++
T Consensus 597 ~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~l~~~~~ 675 (785)
T 3s9v_A 597 DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEV-LTDEVLSKIDRESRFLQLMG 675 (785)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSC-CCHHHHTTTSTTSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCC-CCHHHHhcccccHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999 99999999766799999999
Q ss_pred HHHHHhcCccchhhhhccCCCchHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhh
Q 015231 302 LIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMM 380 (411)
Q Consensus 302 ~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~~ 380 (411)
.|+||+|||+||++|+++|+++|+|+|||||| |+|+|||+++++++|+++||+||+++++++ +|++|+++++|++|++
T Consensus 676 ~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~ 754 (785)
T 3s9v_A 676 LTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIYKRLVFETARIM 754 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999987 9999999999999999
Q ss_pred hhhcccCCCCCCCCh-hHHHHHHhhhccCCC
Q 015231 381 VVLYQNGDGYTNSTG-KTKDRIASLLVDPLP 410 (411)
Q Consensus 381 ~~~Y~~~D~~t~~~~-~~k~~i~~l~~~pi~ 410 (411)
++||+++||||.|+. +||++|++||++||.
T Consensus 755 ~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 755 QLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999875 799999999999984
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2.5e-84 Score=691.24 Aligned_cols=349 Identities=19% Similarity=0.261 Sum_probs=303.5
Q ss_pred ccchHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHhc--------CCCchHHHHHHhccCccccCcchhHHHhhHH
Q 015231 3 TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRGMPRLEARQYIS 74 (411)
Q Consensus 3 ~~d~~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 74 (411)
.+|++||||||||||+++|||+|||||+.||++||++.+.. ++++|++||+|||++|||+++||||||+||+
T Consensus 334 ~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~ 413 (727)
T 3pya_A 334 NQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYID 413 (727)
T ss_dssp CCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHH
Confidence 57999999999999999999999999999999999998752 2578999999999999999999999999999
Q ss_pred hhhcCccc-------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHhhhCCCCCChhHHHHHHHHhhhhhcccc
Q 015231 75 IYEADNST-------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYF 141 (411)
Q Consensus 75 ~Y~~~~~~-------------~n~~llelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~ 141 (411)
+|+++ ++ +|++||||||||||+||++||+||++++||||++|| .++||+|||++|||||++|++|
T Consensus 414 ~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~f 491 (727)
T 3pya_A 414 QYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIF 491 (727)
T ss_dssp HCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSC
T ss_pred HhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccC
Confidence 99986 54 699999999999999999999999999999999999 5799999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHhhhhh---------hhcc---CChh--HHHHHHHHHHH
Q 015231 142 EPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV---------AANE---LPKY--MQVCYFALLDV 207 (411)
Q Consensus 142 eP~~s~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~rWd~~---------~~~~---lp~~--mk~~~~al~~~ 207 (411)
||+||.+|+++||.+++++++||+||+|| ||++.||+||+|||.+ +.+. +|+| ||+||.+|+++
T Consensus 492 eP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t 569 (727)
T 3pya_A 492 ESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGT 569 (727)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999974 3333 3877 99999999999
Q ss_pred HHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHH
Q 015231 208 VKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRA 286 (411)
Q Consensus 208 ~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~ 286 (411)
+||++.++.+ +|. ++.++++++|.++++++++|++ + +| |. +++.++.+..|.. +++ +
T Consensus 570 ~nei~~~~~k~qg~-~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae-llv~~I~l~sG~~-l~e-~ 627 (727)
T 3pya_A 570 LNQMSFDLFMSHGR-DVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE-LMVKMIILMKNND-LTN-F 627 (727)
T ss_dssp HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH-HHHHHHHHHSSSC-GGG-G
T ss_pred HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee-eeeeeeecCCCcc-hHh-h
Confidence 9999998888 444 6999999999999999999987 2 33 22 4444444445777 887 5
Q ss_pred HHhhcchhHHHHHHHHHHHHhcCccchhhhhccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--C
Q 015231 287 LDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPN--H 364 (411)
Q Consensus 287 ~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~--~ 364 (411)
+.. +.+..+.++++.|+||+||+.+|++|+ .+++.+.|+..|+++++.+++++ .
T Consensus 628 l~~-~ey~~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ 683 (727)
T 3pya_A 628 FTH-THFVRLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESDTF 683 (727)
T ss_dssp GSS-HHHHHHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCTTT
T ss_pred ccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 554 556669999999999999999999976 55789999999999999999754 6
Q ss_pred CChhHHHHHHHHhhhhhhhcccCCCCCCCChhHHHHHHhhhccCCC
Q 015231 365 PPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 410 (411)
Q Consensus 365 ~p~~~~~~~~n~~R~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 410 (411)
+|++| |+.+|++.||.. ||+.|+ |+.+|.+++++||.
T Consensus 684 ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 684 RDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHHHSCCC
T ss_pred CCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHHcCccc
Confidence 99999 999999999985 999985 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.1e-53 Score=423.59 Aligned_cols=251 Identities=13% Similarity=0.089 Sum_probs=226.8
Q ss_pred HHhhHHHHHHH-HHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhcccc--CCHHH
Q 015231 99 QALHRIELSEI-SRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY--GTLEE 174 (411)
Q Consensus 99 Q~~hq~El~~l-~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~--gt~eE 174 (411)
+..|.+|++.. ++||+++|+.+ .+|+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 34567788766 56999999964 69999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CH
Q 015231 175 LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVP-TF 253 (411)
Q Consensus 175 l~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vP-t~ 253 (411)
++.|++++.+|+.+ .+|+++++++.++.+++++++..+.+ .+..+++++|+++++++++||+|+.+|++| |+
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 99999999999864 57999999999999999998755322 578999999999999999999999999999 99
Q ss_pred HHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCCCchHHHHHHHhc
Q 015231 254 EECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY 333 (411)
Q Consensus 254 eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~ 333 (411)
+||+++|++|+|++++++++++++|.. +|+++++. +..++++++++.++||+|||+||+||+++|+++|+|.|||+++
T Consensus 167 eEYl~~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999 99988775 4556899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 015231 334 GVSEEEACNKIKGMVEIEWMNINEEI 359 (411)
Q Consensus 334 g~s~eeA~~~i~~~i~~~wk~ln~e~ 359 (411)
|+|+|||++++.++++++||+||+..
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.2e-51 Score=400.43 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=222.3
Q ss_pred hhHHHHHHHHH-HHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhccccCCHHHHHHH
Q 015231 101 LHRIELSEISR-WWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLF 178 (411)
Q Consensus 101 ~hq~El~~l~r-W~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~gt~eEl~~f 178 (411)
-|.+|++...+ ||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 36778887755 88999996 579999999999999999898999999999 999999999999999999 789999999
Q ss_pred HHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHh
Q 015231 179 THAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVE 258 (411)
Q Consensus 179 t~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~ 258 (411)
++++.+|+.+ +.+|+|+++++.++++++++++..+ ..+.++.|+.++++|+ |++|+.+|++||++||++
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~--------~~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHD--------AELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999875 4789999999999999999998754 1345677999999997 899999999999999999
Q ss_pred hhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCC--------CchHHHHHH
Q 015231 259 NSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVECYV 330 (411)
Q Consensus 259 ~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~~yM 330 (411)
+|++|+|+++++++++++||.. +|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLR-LSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 9999999999999999999999 9999998 469999999999999999999999999999 779999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 015231 331 QQYGVSEEEACNKIKGMVEIEWMNINEEI 359 (411)
Q Consensus 331 ke~g~s~eeA~~~i~~~i~~~wk~ln~e~ 359 (411)
+++|+|+|||+++++++++++||++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=8.1e-50 Score=393.16 Aligned_cols=244 Identities=16% Similarity=0.116 Sum_probs=219.9
Q ss_pred HHhhHHHHHHHHH-HHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhccccCCHHHHH
Q 015231 99 QALHRIELSEISR-WWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEELK 176 (411)
Q Consensus 99 Q~~hq~El~~l~r-W~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~gt~eEl~ 176 (411)
...|.+|++..+. ||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~ 102 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGS 102 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHH
Confidence 3457778887755 8899999755 9999999999999999898999999999 999999999999999999 8899999
Q ss_pred HHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHH
Q 015231 177 LFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 256 (411)
Q Consensus 177 ~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEY 256 (411)
.|++++.+|+.+ +.+|+++++++.++++++++++..+ + .+.++.|+.++ ++++|++|+.+|++||++||
T Consensus 103 ~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeY 171 (320)
T 3bny_A 103 AYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGY 171 (320)
T ss_dssp HHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHH
T ss_pred HHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHH
Confidence 999999999975 4679999999999999999998654 1 23455566677 59999999999999999999
Q ss_pred HhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCC--------CchHHHH
Q 015231 257 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVEC 328 (411)
Q Consensus 257 l~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~--------~~n~V~~ 328 (411)
+++|++|+|+++++++++++||.. +|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|
T Consensus 172 l~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~ 247 (320)
T 3bny_A 172 LEYRERDVGKELLAALMRFSMGLK-LSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQI 247 (320)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHH
T ss_pred HHHhhhcccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHH
Confidence 999999999999999999999999 9999998 469999999999999999999999999998 7899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 015231 329 YVQQYGVSEEEACNKIKGMVEIEWMNINEEI 359 (411)
Q Consensus 329 yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~ 359 (411)
||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 248 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 248 LAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999855
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=2.1e-48 Score=392.84 Aligned_cols=243 Identities=11% Similarity=-0.032 Sum_probs=222.9
Q ss_pred HHHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhccc--cC-CHHHHHHHHHHHHh
Q 015231 109 ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDV--YG-TLEELKLFTHAIER 184 (411)
Q Consensus 109 l~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~--~g-t~eEl~~ft~ai~r 184 (411)
+.+||+++|+. ..+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 46799999995 348899999999999999999999999999 999999999999999997 66 99999999999988
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhcccc
Q 015231 185 WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSS 264 (411)
Q Consensus 185 Wd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~ 264 (411)
+-. ....+|+++++++.++.+++++++..+.+ .++.+++++|++++++|++||+|+.+|++||++|||++|++|+
T Consensus 145 ~l~-~~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALD-SPGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHH-SCGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred Hhc-CCCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 522 22335889999999999999998754333 4789999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccCCCchHHHHHHHhcCCCHHHHHHHH
Q 015231 265 GYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKI 344 (411)
Q Consensus 265 g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G~~~n~V~~yMke~g~s~eeA~~~i 344 (411)
|+.++++++++++|.. +|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|||++++
T Consensus 220 g~~~~~~l~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v 297 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEV 297 (382)
T ss_dssp THHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999 99999887 667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 015231 345 KGMVEIEWMNINEEI 359 (411)
Q Consensus 345 ~~~i~~~wk~ln~e~ 359 (411)
+++++++||+||+..
T Consensus 298 ~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 298 RRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999844
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=4.6e-35 Score=298.60 Aligned_cols=246 Identities=12% Similarity=0.059 Sum_probs=189.1
Q ss_pred HHHHHH-HHHHhhhCCCCCChhHHHHHHHHhhhhhccccCCCc-chhhH-HHHHHHHHHHhhhhh-ccccC-CHHHH-HH
Q 015231 104 IELSEI-SRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKY-STTRK-FMTKIIAIASVIDDI-YDVYG-TLEEL-KL 177 (411)
Q Consensus 104 ~El~~l-~rW~~~~~l~~~l~~aRdr~~e~yf~~~~~~~eP~~-s~~Rl-~~ak~~~l~~~~DD~-~D~~g-t~eEl-~~ 177 (411)
+|++.- ..|..++++... +-.|+++..+.|-.++.+..|.. +.+|+ +++||++|+|++||. +|..| +.+.+ ..
T Consensus 129 ~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~ 207 (433)
T 3v1v_A 129 EEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGR 207 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHH
Confidence 366544 569999876433 34577788777855444455999 79999 999999999999999 59755 32221 11
Q ss_pred HHH---HHHhhh----hhh--hccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015231 178 FTH---AIERWE----VVA--ANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAK 248 (411)
Q Consensus 178 ft~---ai~rWd----~~~--~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g 248 (411)
+.. ++.... ... ....+ -.++..+++++++++...+.+ .+..+++++|++++++|++||+|+.+|
T Consensus 208 l~~a~~~~d~l~~~~~g~p~~~~~~~--~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g 281 (433)
T 3v1v_A 208 LLLAHTAIDHFHSTAEYTPTWQASLA--ADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTG 281 (433)
T ss_dssp HHHHHTTTSCCCCCTTTHHHHHHHTT--SSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhcccCCCCccccccC--CchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222 111110 000 00001 124578999999999866544 578999999999999999999999999
Q ss_pred CCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhccC-CCchHHH
Q 015231 249 YVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVE 327 (411)
Q Consensus 249 ~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~~G-~~~n~V~ 327 (411)
++||++|||++|++| |+.+++.++.+++|.. +|++++++ +...+|+++++.++||+|||+||+||+++| +++|+|.
T Consensus 282 ~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~ 358 (433)
T 3v1v_A 282 HVPEVWEYLAMRQFN-NFRPCPTITDTVGGYE-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPV 358 (433)
T ss_dssp CCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHH
T ss_pred CCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCC-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHH
Confidence 999999999999999 6777777788889998 99998887 556779999999999999999999999995 7889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 015231 328 CYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 359 (411)
Q Consensus 328 ~yMke~g~s~eeA~~~i~~~i~~~wk~ln~e~ 359 (411)
|||+++|+|+|||++++.++++++++++.+..
T Consensus 359 ~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 359 VIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.82 E-value=7e-20 Score=183.15 Aligned_cols=248 Identities=10% Similarity=-0.012 Sum_probs=177.2
Q ss_pred HHHHHHHhhhC------------CCCCChhHHHHHHHHhhhhhccccCCCcchhhH-HHHHHHHHHHhhhhhccccCCHH
Q 015231 107 SEISRWWKDID------------FATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLE 173 (411)
Q Consensus 107 ~~l~rW~~~~~------------l~~~l~~aRdr~~e~yf~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~~D~~gt~e 173 (411)
.+..+|..+.| +. .-+-..++++.+-.|.++..| |..+.+.+ .++++.+|+|++||++|..+ +
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 34457888888 53 234567788888888666555 99999988 99999999999999999654 6
Q ss_pred HHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q 015231 174 ELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTF 253 (411)
Q Consensus 174 El~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~ 253 (411)
++..|.+.+.+ ... |+ .++..++.+.+.++... .++ .+..++.++|.+++.++..|+.. .+..|+.
T Consensus 109 ~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~~~---~~p-~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 109 TMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVLRH---FGP-FCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHHTT---SCH-HHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHHHh---cCH-HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 66667766543 211 11 25556666666665433 233 78999999999999999999863 7778999
Q ss_pred HHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCccchhhhhc-cCCCchHHHHHHHh
Q 015231 254 EECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQE-RGDAPSSVECYVQQ 332 (411)
Q Consensus 254 eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~-~G~~~n~V~~yMke 332 (411)
++|...++.++|..-.... +..+.. +.++... .+.+...+.....++.++|||.||.||.. .|+.+|.|..++.+
T Consensus 175 ~~Y~~~rR~~sG~~E~~~~--~~~P~~-~~~e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~ 250 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCVGA--SLWPKE-QFNERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVS 250 (374)
T ss_dssp TTHHHHHHHHHHCHHHHHH--TTCCTT-TCCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHH--hhcccc-ccchhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhc
Confidence 9999998888887533322 112222 2211111 12234566777779999999999999998 49999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhh
Q 015231 333 YGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARM 379 (411)
Q Consensus 333 ~g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~~R~ 379 (411)
+|+|.+||++++..++..+..++-.. +. ...|. +++.+-+..|.
T Consensus 251 ~g~S~~eAl~~v~~~~~~~~~r~~~~-L~-~~~~~-~l~al~~~irG 294 (374)
T 1yyq_A 251 DEISLHEALEKLTQDTLHSSKQMVAV-FS-DKDPQ-VMDTIECFMHG 294 (374)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHH-HS-SSCHH-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-hc-cCCHH-HHHHHHHHHhH
Confidence 99999999999999999999888553 32 22332 44444444443
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=91.58 E-value=8 Score=36.41 Aligned_cols=194 Identities=16% Similarity=0.115 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHhhhhhccccCCHHHHHHHHHHHHh-hhhhhh--ccCChhHHHHHHHHHHHHHHHHHHHhccCCcch
Q 015231 147 TTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIER-WEVVAA--NELPKYMQVCYFALLDVVKEMEDKLVNKEPLCC 223 (411)
Q Consensus 147 ~~Rl~~ak~~~l~~~~DD~~D~~gt~eEl~~ft~ai~r-Wd~~~~--~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~ 223 (411)
..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++ .+.... ...| -.++..++..++.+.. -+
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~--~~pv~~al~~~~~~~~------l~--- 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQS--DRRIMMALQHVAQHKN------IA--- 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSS--CHHHHHHHHHHHHHSC------CC---
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCC--CCHHHHHHHHHHHHhC------CC---
Confidence 35665556777888899999976544446555555543 111110 0002 2467777777765531 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHH
Q 015231 224 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 303 (411)
Q Consensus 224 ~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i 303 (411)
++.+.+++.++. .+......+|++|+......+.|.--..++-.+|..+ .++..+ .....+..
T Consensus 107 ----~~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~---~~~~~~-------~A~~lG~A 169 (293)
T 3acx_A 107 ----FQSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE---THQTYD-------VARRLGES 169 (293)
T ss_dssp ----HHHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC---CHHHHH-------HHHHHHHH
T ss_pred ----HHHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC---cHHHHH-------HHHHHHHH
Confidence 233456666664 2334456789999988888777766655555554322 122222 22222333
Q ss_pred HHHhcCccchhhhhccCC--CchHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHH
Q 015231 304 ARLDDDVHTYKVEQERGD--APSSVECYVQQYGVSEEE---------ACNKIKGMVEIEWMNINEEIQDPNHPPLQWLL 371 (411)
Q Consensus 304 ~RL~NDi~S~~~E~~~G~--~~n~V~~yMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~ 371 (411)
.-|.|=+........+|- .+.- .|.++|+|.++ ..+-+..++..+..-+.+..--...+|.....
T Consensus 170 lQltNilRDv~eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r~ 245 (293)
T 3acx_A 170 LQLINILRDVGEDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQP 245 (293)
T ss_dssp HHHHHHHHCHHHHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHHH
Confidence 333332222333345564 3443 36789999876 23445566666665555433222346654443
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=88.75 E-value=16 Score=34.39 Aligned_cols=156 Identities=14% Similarity=0.191 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHhhhhhccccCC--HHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCCcchHH
Q 015231 148 TRKFMTKIIAIASVIDDIYDVYGT--LEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMY 225 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~gt--~eEl~~ft~ai~rWd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~~~~~~ 225 (411)
.|-.+.-+-.|.=..||+-|.... ...|+.+-+.+.+.- ..-|. .+++.++.+++++.. ++
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~----~g~~~--~pv~~al~~~~~~~~--l~--------- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAF----AGEAT--TPAFRALQFTIATCN--LP--------- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHH----HTCCC--SHHHHHHHHHHHHHT--CC---------
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh----cCCCC--CHHHHHHHHHHHHcC--CC---------
Confidence 444444566677788999996432 334444444444311 11132 367788887776642 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHH
Q 015231 226 YAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIAR 305 (411)
Q Consensus 226 ~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~R 305 (411)
++.+.+++.++.... .....+|++|+......+.|.--.+++..+| .. +++.... ....+...-
T Consensus 103 --~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g--~~--~~~~~~~-------A~~lG~AlQ 166 (294)
T 4hd1_A 103 --MEPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFG--CL--DDERARL-------SDATCTALQ 166 (294)
T ss_dssp --SHHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTT--CC--SHHHHHH-------HHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhC--CC--CHHHHHH-------HHHHHHHHH
Confidence 123455666664332 3345689888888877776655444444443 22 2232221 122233334
Q ss_pred HhcCccchhhhhccCC--CchHHHHHHHhcCCCHHH
Q 015231 306 LDDDVHTYKVEQERGD--APSSVECYVQQYGVSEEE 339 (411)
Q Consensus 306 L~NDi~S~~~E~~~G~--~~n~V~~yMke~g~s~ee 339 (411)
|.|=+.......++|- .+.- .|.++|+|.++
T Consensus 167 ltNilRDv~eD~~~gR~YlP~~---~l~~~gv~~~d 199 (294)
T 4hd1_A 167 VANHMQDIDRDLALGRIYVPRA---DLEQFGATLDD 199 (294)
T ss_dssp HHHHHHTHHHHHHTTCBCSCHH---HHHTTTCCHHH
T ss_pred HHHHHHhchhhhccCceeCCHH---HHHHcCCCHHH
Confidence 4443333334455664 4543 47889999876
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=86.33 E-value=3.7 Score=39.08 Aligned_cols=141 Identities=6% Similarity=-0.045 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.+..+.++...++.+-..+..|... .||.++|++.-..-+|.....+ ...| ++. .+++..+. ...+-+..
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag--~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG--AEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4556666777788888888887543 4899999988665555543322 2222 122 34544433 35667777
Q ss_pred HHHHHHhcCccchhhhh-----ccCCCchHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hHHHH
Q 015231 301 SLIARLDDDVHTYKVEQ-----ERGDAPSSVECYVQQYGV--SEEEACNKIKGMVEIEWMNINEEIQDPNHPPL-QWLLP 372 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~E~-----~~G~~~n~V~~yMke~g~--s~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~ 372 (411)
.+..-+.||+..+.-.. ..|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +-++.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHH
Confidence 88888899988775432 2233 3666666544321 1455566666666666655542 553 34455
Q ss_pred HHHHhhh
Q 015231 373 SLNLARM 379 (411)
Q Consensus 373 ~~n~~R~ 379 (411)
..++++.
T Consensus 272 L~~l~~~ 278 (295)
T 3ipi_A 272 LFQITDY 278 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=84.76 E-value=8 Score=37.80 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.+..+.+++..++.+-..+..|.... ||.++|++.-..-+|.....+. .+| ++. .+++..+. .-.+-+..
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~-~lga~lag--a~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAG-YLGAMHAG--AAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 56778888899999999999987655 9999999986665555533322 222 121 34444433 35667777
Q ss_pred HHHHHHhcCccchhh
Q 015231 301 SLIARLDDDVHTYKV 315 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~ 315 (411)
.+..-+.||+..+.-
T Consensus 233 G~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccC
Confidence 888888899887743
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=77.69 E-value=35 Score=32.99 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 299 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~ 299 (411)
..+..+.++...++.+-..+..|.. +..||.++|++.-..-+|.....+ ...| ++. .+++..+. .-.+-+.
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 223 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSAG--VDVAKSEA---LRDYGLN 223 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3567778888889999888888753 345899999998766665543322 2222 122 35554433 3567778
Q ss_pred HHHHHHHhcCccchhh
Q 015231 300 SSLIARLDDDVHTYKV 315 (411)
Q Consensus 300 ~~~i~RL~NDi~S~~~ 315 (411)
.++..-+.||+..+.-
T Consensus 224 lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 224 LGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888888999887753
No 22
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=77.44 E-value=31 Score=32.35 Aligned_cols=120 Identities=10% Similarity=-0.011 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.+..+.++...++.+-..+..|......+|.++|++.-..-+|.....+. ..| ++. .+++ ..-++-...
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~-~~ga~lag--~~~~------~l~~~g~~l 205 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCF-SAPFILXG--XDHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT--CCCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhC--CChh------HHHHHHHHH
Confidence 56667777788888888888887654478999999987665554433222 221 111 2222 125667777
Q ss_pred HHHHHHhcCccchhhhh-ccCC-----C--chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 301 SLIARLDDDVHTYKVEQ-ERGD-----A--PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~E~-~~G~-----~--~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
.+..-+.||+..+.-.. ..|. . .+...+| ..|.|.+.+.+.++++.+.++.
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999998876432 2232 2 2343333 3688999999999999988866
No 23
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=76.76 E-value=27 Score=33.42 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 309 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~ND 309 (411)
..++.+-..+..|.. ..||.++|+..-..-+|.....+ ...| ++.. .+++..+. ...+-+...+..-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 158 AGMVGGQAIDLASVG--KKLDLPGLENMHIRKTGALIRAS-VRLACLARPG-LPAEQFDR---LDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTT-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346666666667754 37899999998554444433222 2233 2221 34554433 35667777788888899
Q ss_pred ccchhhhh-----------ccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 015231 310 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 356 (411)
Q Consensus 310 i~S~~~E~-----------~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln 356 (411)
+..+.-+. ..|. .+.+.+| ..|.|.+.+.+.++++...+.
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNK-PNYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHHTCC---------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 88775321 1222 2555554 478999999999998887664
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=76.08 E-value=51 Score=31.68 Aligned_cols=86 Identities=10% Similarity=0.024 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 299 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~ 299 (411)
.....+.++...++.+-..+..|.. +..||.++|++.-..-+|.....+. ..| ++. .+++..+. .-.+-+.
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~---l~~~g~~ 211 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAAT-EVGGIIGG--APEDQVQA---LFDYGDA 211 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3566777888889999888888864 3468999999886655555433222 222 122 34444333 3566777
Q ss_pred HHHHHHHhcCccchh
Q 015231 300 SSLIARLDDDVHTYK 314 (411)
Q Consensus 300 ~~~i~RL~NDi~S~~ 314 (411)
..+..-+.||+..+.
T Consensus 212 lG~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 212 LGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 778888888887764
No 25
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=75.01 E-value=18 Score=34.25 Aligned_cols=114 Identities=10% Similarity=0.082 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCcc
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 311 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~ 311 (411)
..++.+-..+..|... .+|.++|++.-..-+|.....+. ..|.-..+.+++..+. .-++-....+..-+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG~aFQI~DDil 221 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAV-MSAADIANVDDTTKEH---LESYSYHLGMMFQIKDDLL 221 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHTCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566666767777543 78999999987665555433222 2221000134554433 3567777888888999998
Q ss_pred chhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 312 TYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 312 S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
.+.-.. ..| |. .+...++- .+.|.+.+.+.++++.+.+..
T Consensus 222 D~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 222 DCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 775332 112 11 25554443 578888899999988877754
No 26
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=74.25 E-value=21 Score=33.76 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 309 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~ND 309 (411)
..++.+-..+..|...+..||.++|+..-..-+|.....+ ...| ++. .+++ ....+-....+..-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGAILAG--ADRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHH
Confidence 4566777777888755778999999998554444433222 1222 111 2222 124566777888889999
Q ss_pred ccchhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 310 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 310 i~S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
+..+.-+. .-| |. .+...++ ..+.|.+.+.+.++++...++.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp CC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 112 22 2455443 3577888899999988877764
No 27
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=73.29 E-value=28 Score=33.43 Aligned_cols=87 Identities=7% Similarity=0.002 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 299 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~ 299 (411)
.....+.++...++.+-..+..|.. ...||.++|++.-..-+|.....+. ..| ++. .+++..+. .-.+-..
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~---l~~~g~~ 205 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACA-EAAALSVQ--VGEEEVAF---ARLLGEY 205 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3577788888999999988888854 3358999999987766665533332 222 122 34444433 3567777
Q ss_pred HHHHHHHhcCccchhh
Q 015231 300 SSLIARLDDDVHTYKV 315 (411)
Q Consensus 300 ~~~i~RL~NDi~S~~~ 315 (411)
..+..-+.||+..+..
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 206 IGICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCCC
Confidence 8888888999888763
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=71.63 E-value=20 Score=33.98 Aligned_cols=113 Identities=13% Similarity=0.138 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 309 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~ND 309 (411)
..++.+-..+..|. +..||.++|+..-..-+|.....+ ...| ++.. .+++..+ ...++-+...+..-+.||
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~-~~~~~~~---~l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGE-KGRAMLP---HLDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHTTHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCC-CCHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35667777777775 457899999998654444433222 2222 2221 2333222 235566777778888899
Q ss_pred ccchhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 310 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 310 i~S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
+..+.-+. ..| |. .+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88775432 112 11 2555554 3688999999999988877754
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=71.01 E-value=28 Score=32.94 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHhhh-ccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 015231 233 GLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 309 (411)
Q Consensus 233 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~-~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~ND 309 (411)
.++.+-..+..|. +..||.++|...- ..|++. ...+ ...| ++. .+++..+. ...+-+...+..-+.||
T Consensus 157 ~~~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L-~~~~-~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DD 227 (302)
T 3p8l_A 157 GMVSGQMGDIEGE--KVSLTLEELAAVHEKKTGAL-IEFA-LIAGGVLAN--QTEEVIGL---LTQFAHHYGLAFQIRDD 227 (302)
T ss_dssp THHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHcCcHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4556666666664 3478999999985 445443 2222 2222 122 35554433 35677777888888999
Q ss_pred ccchhhh-----------hccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 310 VHTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 310 i~S~~~E-----------~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
+..+.-+ ...|. .+...++ ..+.|.+.+.+.++++.+.++.
T Consensus 228 ilD~~~d~~~~GK~~g~Dl~egK-~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 228 LLDATSTEADLGKKVGRDEALNK-STYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHHTTC------------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8877432 11222 2454443 4789999999999999988765
No 30
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=70.88 E-value=33 Score=32.97 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 309 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~ND 309 (411)
..++.+-..+..|... .+|.++|++.-..-+|....... ..| ++. .+++..+. .-.+-....+..-+.||
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~-~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFAC-EAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADD 263 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHH-HHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777777777654 68999999987765555433222 222 111 34454433 35677778888889999
Q ss_pred ccchhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 310 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 310 i~S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
+..+.-+. ..| |. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 264 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 264 LLDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98775321 112 11 2555443 3688999999999999887754
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=70.72 E-value=36 Score=32.24 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCcc
Q 015231 234 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDVH 311 (411)
Q Consensus 234 ~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi~ 311 (411)
++.+-..+..|... .||.++|...-..-+|.....+ ...| ++.. .+++..+. ...+-+...+..-+.||+.
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~-~~~~~~~~---l~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGR-AEKGELKA---LQTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56666666677543 4899999998544444333222 2222 1221 15554433 3567777788888899998
Q ss_pred chhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 312 TYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 312 S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
.+.-+. ..| |. .+.+.+| ..+.|.+.+++.++++.+.++.
T Consensus 227 D~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 276 (304)
T 3lsn_A 227 DVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALRP 276 (304)
T ss_dssp HHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 875431 112 21 2555554 4789999999999988877653
No 32
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=70.52 E-value=43 Score=32.10 Aligned_cols=87 Identities=16% Similarity=0.043 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 302 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~~ 302 (411)
.+..+.++...++.+-..+..|.... ..|.++|++.-..-+|.....+. ..|.-..+.+++..+. .-.+-....+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG~ 212 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASA-KVGGIIGTDNEEYIKA---LSSWGRNVGI 212 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 45566777788888988898986543 45999999987765555433322 2221000134554433 3567777888
Q ss_pred HHHHhcCccchh
Q 015231 303 IARLDDDVHTYK 314 (411)
Q Consensus 303 i~RL~NDi~S~~ 314 (411)
..-+.||+..+.
T Consensus 213 aFQI~DD~lD~~ 224 (342)
T 1wy0_A 213 AFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888899998774
No 33
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=68.90 E-value=37 Score=32.40 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 015231 233 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 310 (411)
Q Consensus 233 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi 310 (411)
.++.+-..+..|. +..||.++|+..-..-+|.....+ ...| ++.. .+++..+. ...+-+...+..-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQ-VKPEQLAK---LDAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566666666665 445899999998654444433222 2222 2222 34544433 356777778888889998
Q ss_pred cchhhhh-----------ccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 311 HTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 311 ~S~~~E~-----------~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
..+.-+. ..|. .+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8774321 1222 3666555 4688999999999999887764
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=62.39 E-value=1e+02 Score=29.46 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhc--CCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
....+.++...++.+-+.+..|.. +..||.++|++.-..-+|.....+ ...|+ +. .+++..+. .-.+-+..
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 216 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG--APQSVIDR---TRDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 456677778888888877777743 346899999987655555443222 22221 22 34554433 35566677
Q ss_pred HHHHHHhcCccchh
Q 015231 301 SLIARLDDDVHTYK 314 (411)
Q Consensus 301 ~~i~RL~NDi~S~~ 314 (411)
.+..-+.||+..+.
T Consensus 217 G~aFQi~DD~ld~~ 230 (334)
T 3pko_A 217 GCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 77778888887664
No 35
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=60.90 E-value=54 Score=31.75 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhc
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFH----------AKY-VPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAI 291 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~----------~g~-vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~ 291 (411)
....+.++...++.+-..+..|.. .+. .||.++|++.-..-+|.....+. .+|.-..+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~-- 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSDDRGLAEA-- 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHH--
Confidence 466778888889999988888862 223 67999999986665555433222 2221000134444333
Q ss_pred chhHHHHHHHHHHHHhcCccchh
Q 015231 292 SVPKIIRSSSLIARLDDDVHTYK 314 (411)
Q Consensus 292 ~~p~i~~~~~~i~RL~NDi~S~~ 314 (411)
.-.+-....+..-+.||+..+-
T Consensus 210 -l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 -AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777888888887764
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=57.71 E-value=79 Score=30.29 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.+..+.++...++.+-..+..|... ..+|.++|++.-..-+|.....+. ..| ++. .+++..+. .-.+-+..
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~---l~~~g~~l 226 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSC-KAVAVLTG--QTAEVAVL---AFEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHH-HHHHHTTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--cCHHHHHH---HHHHHHHH
Confidence 5667777788888888877766432 357999999986554444433222 222 222 34554433 25566777
Q ss_pred HHHHHHhcCccchhh
Q 015231 301 SLIARLDDDVHTYKV 315 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~ 315 (411)
.+..-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 888888899888754
No 37
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=56.37 E-value=62 Score=30.92 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 309 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~ND 309 (411)
..++.+-..+..|... ..||.++|...-..-+|.....+ ...| ++. .+++..+. ...+-+...+..-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLAE--ASEGDIKK---LEGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3466777777777532 36899999998544334332222 2222 122 45554433 35677777888888899
Q ss_pred ccchhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 310 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 310 i~S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
+..+.-+. .-| |. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88774321 111 22 2444443 4689999999999999987764
No 38
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=56.33 E-value=87 Score=29.70 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHhhhc-cccchhHHHHHHHHhc-CCccccHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 015231 233 GLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSLIARLDDDV 310 (411)
Q Consensus 233 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~-~S~g~~~~~~~~~~~~-g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi 310 (411)
.++.+-..+..|... ..||.++|...-. .|++...+.+.+ ..+ |.. .+++..+. ...+-....+..-+.||+
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~-a~~~~~~~---l~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHE-VSEQIKSA---LRTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSS-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456666666677432 3789999999865 454443332222 222 321 34444433 356777778888889998
Q ss_pred cchhhhh-ccC-----CC----chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 015231 311 HTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNIN 356 (411)
Q Consensus 311 ~S~~~E~-~~G-----~~----~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln 356 (411)
..+.-+. ..| |. .+.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8775321 112 11 2555443 478999999999998887665
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=54.59 E-value=1.2e+02 Score=28.35 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 015231 231 IKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 308 (411)
Q Consensus 231 ~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~N 308 (411)
...++.+-..+..|. +..||.++|...-..-+|.....+. ..| ++. .+++..+. ...+-+...+..-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEICE--LNNEESNQ---IYKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344556666666664 3468999999985544444332222 222 122 34444332 3567777888888899
Q ss_pred Cccchhhhh-ccCCC-------chHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 309 DVHTYKVEQ-ERGDA-------PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 309 Di~S~~~E~-~~G~~-------~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
|+..+.-.. ..|.. .+.+.++ ..+.|.++.+++++++.+.++.
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 998775432 22322 1333332 3678888888888888877763
No 40
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=53.64 E-value=73 Score=30.18 Aligned_cols=110 Identities=8% Similarity=-0.005 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 015231 233 GLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 310 (411)
Q Consensus 233 ~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi 310 (411)
.++.+-..+..|. +..+|.++|...-..-+|.....+ ...| ++. .+++..+. ...+-....+..-+.||+
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYA-VQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3555656666664 346899999998544444332222 2222 122 33333322 355667777778888998
Q ss_pred cchhhh-----------hccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 311 HTYKVE-----------QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 311 ~S~~~E-----------~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
..+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 877432 122222 555444 3578888899999988877753
No 41
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=53.18 E-value=82 Score=29.54 Aligned_cols=114 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCC-ccccHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLED-MAITKRALDWAISVPKIIRSSSLIARLDDDV 310 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~-~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi 310 (411)
..++.+-..+..|... .+|.++|+..-..-+|.....+ ...|.-. .+.+++..+. .-++-....+..-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3556777777777543 7899999999755444443222 2222111 1134444333 356677778888899998
Q ss_pred cchhhhh-ccCC---------CchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 311 HTYKVEQ-ERGD---------APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 311 ~S~~~E~-~~G~---------~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
..+.-.. ..|. -.+...+| ..+.|.+.+++.++++.+.++.
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 1222 12554443 2477888899999999888765
No 42
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=51.37 E-value=90 Score=30.09 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.+..+.++..+++.+-..+..|... ..||.++|++.-..-+|.....+ ..+| ++. .+++..+. .-.+-+..
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 216 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLGG--ADERTADT---LEKYGYHL 216 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4566777788889998888888653 36899999998666555554332 2222 121 45554433 35677778
Q ss_pred HHHHHHhcCccchh
Q 015231 301 SLIARLDDDVHTYK 314 (411)
Q Consensus 301 ~~i~RL~NDi~S~~ 314 (411)
.+..-+.||+..+-
T Consensus 217 G~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 217 GLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88888889988764
No 43
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=49.58 E-value=31 Score=32.43 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcC-CCCCHHHHHhhhc-cccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 015231 233 GLVKAYFVEAKWFHAK-YVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 308 (411)
Q Consensus 233 ~~~~a~l~EA~W~~~g-~vPt~eEYl~~~~-~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~N 308 (411)
.++.+-..+..|...+ ..+|.++|+..-. .|++. ...+ ...| ++. .+++..+. .-.+-....+..-+.|
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L-~~~a-~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~D 233 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEAS-AVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVD 233 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3555666566664321 2468899998854 45543 2222 1222 122 34554433 3567777888888999
Q ss_pred CccchhhhhccCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 015231 309 DVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 309 Di~S~~~E~~~G~~~n~V~~yMke~g~s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
|+..+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 234 DiLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 234 DILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998876443 23555444 4678888888888888877654
No 44
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=49.04 E-value=48 Score=31.48 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHH-HhhcchhHHHHHHHHHHHHhc
Q 015231 232 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRAL-DWAISVPKIIRSSSLIARLDD 308 (411)
Q Consensus 232 ~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~-~~~~~~p~i~~~~~~i~RL~N 308 (411)
..++.+-..+..|. +..||.++|+..-..-+|.....+. ..| ++. .+++.. +. ...+-+...+..-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44566666666664 5678999999885544444332221 222 111 233333 32 3567777788888899
Q ss_pred Cccchhhh-hccCCCchHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHHHHH
Q 015231 309 DVHTYKVE-QERGDAPSSVECYVQQYGV------SEEEACNKIKGMVEIEWMNINE 357 (411)
Q Consensus 309 Di~S~~~E-~~~G~~~n~V~~yMke~g~------s~eeA~~~i~~~i~~~wk~ln~ 357 (411)
|+..+.-+ ..-|..... ++... ..+.|.+..+++++++.+.+..
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99887543 223332111 22223 3588888899999988877653
No 45
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=48.50 E-value=1.9e+02 Score=27.63 Aligned_cols=224 Identities=13% Similarity=0.138 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHhhhhhccccC-CHHH----HHHHHHHHHh--hhhhhhccCChhHHHHHHHHHHHHHHHHHHHhccCC
Q 015231 148 TRKFMTKIIAIASVIDDIYDVYG-TLEE----LKLFTHAIER--WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEP 220 (411)
Q Consensus 148 ~Rl~~ak~~~l~~~~DD~~D~~g-t~eE----l~~ft~ai~r--Wd~~~~~~lp~~mk~~~~al~~~~~e~~~~~~~~~~ 220 (411)
.|-.+.-+-.|.=..||+-|... +.++ |+.|-+.+.. |... +..|. .+.++..+..+...+.. +. .
T Consensus 38 ~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~--~~~~~-~~~ll~~~p~v~~~f~~-l~--~- 110 (343)
T 3vj8_A 38 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFM--ESKEK-DRQVLEDFPTISLEFRN-LA--E- 110 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCC--CCCST-TTHHHHTHHHHHHHHHH-SC--H-
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhc--CCChh-hHHHHhcCcHHHHHHHH-hH--H-
Confidence 45555567788889999999764 3333 3334433332 2111 11122 12222211112222211 00 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHH
Q 015231 221 LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 221 ~~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.......+....++.++. .+. ...++|++|+...-..+.|.--..++-.++.... -++. .+ .........
T Consensus 111 -~~~~~i~~~~~~m~~gm~---~dl-~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~-~~~~-~~---~~~~~A~~l 180 (343)
T 3vj8_A 111 -KYQTVIADICRRMGIGMA---EFL-DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF-EDPL-VG---EDTERANSM 180 (343)
T ss_dssp -HHHHHHHHHHHHHHHHHH---HGG-GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS-SCHH-HH---HCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH---Hhc-cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCC-ccch-hh---hHHHHHHHH
Confidence 112223344455555553 232 2567899888888877777666655555554331 1111 10 112334444
Q ss_pred HHHHHHhcCccchhhhhccCC--CchHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChh-
Q 015231 301 SLIARLDDDVHTYKVEQERGD--APSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNHPPLQ- 368 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~E~~~G~--~~n~V~~yMke~g~s~e---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~- 368 (411)
+...-+.|=+........+|- .+.- .|.++|++.+ .+..-+..++..+..-+.+..--...+|..
T Consensus 181 G~AlQltNilRDv~eD~~~gR~YlP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~ 257 (343)
T 3vj8_A 181 GLFLQKTNIIRDYLEDQQGGREFWPQE---VWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQS 257 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCCSCHH---HHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHhHHHHhCCCeeCCHH---HHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 555555555555555556664 3443 3667898865 344556666666665444332111235553
Q ss_pred HHHHH---HHHhh-hhhhhcccCCCCC
Q 015231 369 WLLPS---LNLAR-MMVVLYQNGDGYT 391 (411)
Q Consensus 369 ~~~~~---~n~~R-~~~~~Y~~~D~~t 391 (411)
....+ +-++. ...-+|++.|-|.
T Consensus 258 ~~~~~~ip~~lA~~tL~~i~~~~~v~~ 284 (343)
T 3vj8_A 258 VFNFCAIPQVMAIATLAACYNNQQVFK 284 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGT
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcccc
Confidence 11111 22332 4455677666554
No 46
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=46.97 E-value=1e+02 Score=29.25 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHHhhhccccchh-HHHHH--HHHhcCCccccHHHHHhhcchhHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKW-FHAKYVPTFEECVENSTMSSGYP-MLAVE--ALVGLEDMAITKRALDWAISVPKIIR 298 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W-~~~g~vPt~eEYl~~~~~S~g~~-~~~~~--~~~~~g~~~l~~e~~~~~~~~p~i~~ 298 (411)
....+.++...++.+-..+..| ...+..||.++|++.-..-+|.. ...+. .-...|. +++.. .-.+-.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~---~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK---TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC---CHHHH-----HHHHHH
Confidence 5666778888999999999999 65435689999999876655544 22221 1122232 22221 356667
Q ss_pred HHHHHHHHhcCccchh
Q 015231 299 SSSLIARLDDDVHTYK 314 (411)
Q Consensus 299 ~~~~i~RL~NDi~S~~ 314 (411)
...+..-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7777888888888775
No 47
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=38.99 E-value=1.5e+02 Score=28.57 Aligned_cols=88 Identities=7% Similarity=-0.109 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHHHhhhccccchh-HHHH--HHHHhcCCccccHHHHHhhcchhH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKY----VPTFEECVENSTMSSGYP-MLAV--EALVGLEDMAITKRALDWAISVPK 295 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~----vPt~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~~l~~e~~~~~~~~p~ 295 (411)
....+.+.....+.+-..+..|...+. .+|+++|+..-..-+|+. .... +.-+..|. .+++..+. .-.
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~--~~~~~~~~---l~~ 244 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI--DSKEEHEN---AKA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC--CCHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--ccHHHHHH---HHH
Confidence 466677778888899888888876543 579999999877655544 2211 22222231 24444333 356
Q ss_pred HHHHHHHHHHHhcCccchhh
Q 015231 296 IIRSSSLIARLDDDVHTYKV 315 (411)
Q Consensus 296 i~~~~~~i~RL~NDi~S~~~ 315 (411)
+-....+..-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77778888888999887753
No 48
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=35.80 E-value=1.9e+02 Score=28.02 Aligned_cols=87 Identities=8% Similarity=-0.106 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHHHhhhccccchh-HHHH--HHHHhcCCccccHHHHHhhcchhH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKY----VPTFEECVENSTMSSGYP-MLAV--EALVGLEDMAITKRALDWAISVPK 295 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~----vPt~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~~l~~e~~~~~~~~p~ 295 (411)
.+..+.+.....+.+-..+..|...+. .+|+++|+..-..-+|+. .... +.-+..| . .+++..+. ...
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~-a~~~~~~~---l~~ 251 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-I-DGEKEHAN---AKK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-C-CCHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-C-CcHHHHHH---HHH
Confidence 466677778888899888888876544 389999999977655554 2221 2222223 1 34444433 356
Q ss_pred HHHHHHHHHHHhcCccchh
Q 015231 296 IIRSSSLIARLDDDVHTYK 314 (411)
Q Consensus 296 i~~~~~~i~RL~NDi~S~~ 314 (411)
+-....+..-+.||+..+.
T Consensus 252 ~g~~lG~aFQI~DDiLD~~ 270 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 7778888888899988764
No 49
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=35.45 E-value=30 Score=25.75 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 015231 333 YGVSEEEACNKIKGMVEIEWMNI 355 (411)
Q Consensus 333 ~g~s~eeA~~~i~~~i~~~wk~l 355 (411)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
No 50
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=34.55 E-value=83 Score=30.08 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAK--YVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIR 298 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g--~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~ 298 (411)
....+.+....++.+-..+..|.... ..||.++|++.-..-+|.....+. ..| ++. .+++ . ...-.+-+
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~-~---~~l~~~g~ 204 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTL-RLMEALSP--SSHH-G---HSLVPFIN 204 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHCC--C----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC--CcHH-H---HHHHHHHH
Confidence 45566777888888888899997655 578999999987665554433222 222 111 2222 1 23466788
Q ss_pred HHHHHHHHhcCccchhh
Q 015231 299 SSSLIARLDDDVHTYKV 315 (411)
Q Consensus 299 ~~~~i~RL~NDi~S~~~ 315 (411)
...+..-+.||+..+.-
T Consensus 205 ~lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 205 LLGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 88888899999987753
No 51
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=31.27 E-value=1.3e+02 Score=28.47 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 301 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~p~i~~~~~ 301 (411)
.....+.++...++.+-..+..|... ..||.++|++.-..-+|.....+. ..|.-..+.+++..+. .-.+-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASC-HLGALSSQLDEQSTYH---IKQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTCCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHH
Confidence 35667777888889998888888643 358999999987765555533322 2221111145554433 356777778
Q ss_pred HHHHHhcCccchhh
Q 015231 302 LIARLDDDVHTYKV 315 (411)
Q Consensus 302 ~i~RL~NDi~S~~~ 315 (411)
+..-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88888899887743
No 52
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=31.04 E-value=2.5e+02 Score=26.19 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh-cCCccccHHHHHhhcchhHHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
.....+.+.+.+++.+-..+..|......||.++|++.-..-+|.....+...-+ ++. .++ ..-.+-...
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~--~~~-------~l~~~g~~l 181 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD--YKE-------DLKPLLNTL 181 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC--ChH-------HHHHHHHHH
Confidence 3566688888999999999999977666899999999877655544332221111 121 221 234566777
Q ss_pred HHHHHHhcCccchh
Q 015231 301 SLIARLDDDVHTYK 314 (411)
Q Consensus 301 ~~i~RL~NDi~S~~ 314 (411)
.+..-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 78888888887764
No 53
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=30.71 E-value=36 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKG 346 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~ 346 (411)
|-...-|...|.|.|+|.++|++.+.+
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 433467899999999999999987764
No 54
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=29.01 E-value=67 Score=29.82 Aligned_cols=69 Identities=7% Similarity=-0.002 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCc
Q 015231 234 LVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 310 (411)
Q Consensus 234 ~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL~NDi 310 (411)
++.+-..+..|..+ .||+++|...-..-+|.....+ ...| ++. .+++..+. ..++-+...+..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a-~~lGailag--a~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACG-AACGAILGG--AAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 45555555566433 7899999986544444433322 2222 122 45554433 356777788888889997
No 55
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=28.93 E-value=1.6e+02 Score=27.43 Aligned_cols=84 Identities=14% Similarity=-0.027 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHH--HhcCCccccHHHHHhhcchhHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL--VGLEDMAITKRALDWAISVPKIIRS 299 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~--~~~g~~~l~~e~~~~~~~~p~i~~~ 299 (411)
.....+.++...++.+-..+..|.... ||.++|++.-..-+|.....+... ...|.. ++. .-.+-..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~------l~~~g~~ 195 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGEL---GED------LYNLGVT 195 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCC---CHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCC---HHH------HHHHHHH
Confidence 356777888889999999999997654 999999998776555543322211 112322 121 2455666
Q ss_pred HHHHHHHhcCccchhhh
Q 015231 300 SSLIARLDDDVHTYKVE 316 (411)
Q Consensus 300 ~~~i~RL~NDi~S~~~E 316 (411)
..+..-+.||+..+.-+
T Consensus 196 lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 196 IGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCc
Confidence 67777778887776543
No 56
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=28.11 E-value=3.5e+02 Score=25.36 Aligned_cols=83 Identities=7% Similarity=-0.111 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 015231 222 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 299 (411)
Q Consensus 222 ~~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~ 299 (411)
.....+.++...++.+-..+..|.. ...||.++|++.-..-+|.....+ ...| ++. .+.+ ....+-+.
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~------~l~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMAILLN--KDAK------IYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--SCHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcC--CCHH------HHHHHHHH
Confidence 3566677788888999888888864 346899999987665555443322 2222 122 2311 22456677
Q ss_pred HHHHHHHhcCccchh
Q 015231 300 SSLIARLDDDVHTYK 314 (411)
Q Consensus 300 ~~~i~RL~NDi~S~~ 314 (411)
.++..-+.||+..+-
T Consensus 192 lG~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 192 FGMAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccc
Confidence 777778888887764
No 57
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=26.91 E-value=1.5e+02 Score=28.35 Aligned_cols=87 Identities=9% Similarity=-0.030 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-----------hcCC----CCCHHHHHhhhccccchh-HHHH--HHHHhcCCccccH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWF-----------HAKY----VPTFEECVENSTMSSGYP-MLAV--EALVGLEDMAITK 284 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~-----------~~g~----vPt~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~~l~~ 284 (411)
....+.++...++.+-..+..|. ..|. .+|.++|+..-..-+|.. .... +.-+..| . .++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~-~~~ 229 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-A-AAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-C-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-C-CCH
Confidence 46667778888899988888887 3223 489999999877655544 2221 2222223 1 222
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhcCccchh
Q 015231 285 RALDWAISVPKIIRSSSLIARLDDDVHTYK 314 (411)
Q Consensus 285 e~~~~~~~~p~i~~~~~~i~RL~NDi~S~~ 314 (411)
+..+ ..-.+-....+..-+.||+..+.
T Consensus 230 ~~~~---~l~~~g~~lG~aFQi~DD~lD~~ 256 (362)
T 1yhl_A 230 VEMN---LVERVAHLIGEYFQVQDDVMDCF 256 (362)
T ss_dssp SCHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 23566777788888889888774
No 58
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.00 E-value=54 Score=26.95 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhhhCCCCCCh-hHHHHHHHHh
Q 015231 101 LHRIELSEISRWWKDIDFATKLP-FARDRLVECY 133 (411)
Q Consensus 101 ~hq~El~~l~rW~~~~~l~~~l~-~aRdr~~e~y 133 (411)
+-.+|++++.+|..+++|..... ..|| +...|
T Consensus 12 l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~ 44 (127)
T 2ee7_A 12 VDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGV 44 (127)
T ss_dssp CCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchh
Confidence 45689999999999999854333 4454 44333
No 59
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=25.84 E-value=2.4e+02 Score=26.14 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 015231 223 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 300 (411)
Q Consensus 223 ~~~~~~~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~ 300 (411)
....+.++...++.+-..+..| .++|++.-..-+|.....+ ...| ++ . +++..+. .-.+-...
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a-~~~ga~la-~--~~~~~~~---l~~~g~~l 200 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLS-TVLSAYAS-K--HYNTKQQ---MLDVGKYL 200 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHH-HHHHHHHT-T--CGGGHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHH-HHHHHHHc-C--CHHHHHH---HHHHHHHH
Confidence 4555666666677666655443 6889888665555443222 1222 12 2 2222222 25566777
Q ss_pred HHHHHHhcCccchhhhhc---cCCCchHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHH
Q 015231 301 SLIARLDDDVHTYKVEQE---RGDAPSSVECYVQQYGVSEEEA-CNKIKGMVEIEWMNINE 357 (411)
Q Consensus 301 ~~i~RL~NDi~S~~~E~~---~G~~~n~V~~yMke~g~s~eeA-~~~i~~~i~~~wk~ln~ 357 (411)
.+..-+.||+..+.-+.+ ++...+...+| . ..+.++| ...+.+.++++.+.+..
T Consensus 201 G~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 201 GIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhcCCCChhhhcCcccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888898887743221 11224666666 2 3346777 45677777777766643
No 60
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=24.23 E-value=55 Score=26.27 Aligned_cols=47 Identities=34% Similarity=0.427 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHh-------------cCCCchHHHHHHhcc
Q 015231 7 KGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS-------------HLSTPLVDQVEHSLE 57 (411)
Q Consensus 7 ~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~-------------~~~~~l~~~V~~aL~ 57 (411)
+.||.-|=.+ .+|..|-+|..||+.-++.-++ .+.++|+.+|.++++
T Consensus 12 ~~iL~~yl~~----~~E~~Ly~aq~fsr~liek~I~PEeiV~iHk~~i~~l~~~l~e~v~~s~d 71 (111)
T 2j6y_A 12 HQLLSRYIAE----LTKTSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLD 71 (111)
T ss_dssp HHHHHHHHHH----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHc----ccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 4566666555 4789999999999998876432 135666666666665
No 61
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=23.03 E-value=64 Score=24.58 Aligned_cols=47 Identities=36% Similarity=0.444 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHhHHh-------------cCCCchHHHHHHhcc
Q 015231 7 KGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS-------------HLSTPLVDQVEHSLE 57 (411)
Q Consensus 7 ~~ll~LyeAs~l~~~gE~iLdea~~ft~~~L~~~~~-------------~~~~~l~~~V~~aL~ 57 (411)
+.+|+-|=.+ .+|..|-+|..||+.-+++-++ .+.++++++|.++++
T Consensus 12 ~~iL~~yl~~----~~E~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~l~e~v~~Sfd 71 (84)
T 1w53_A 12 HQLLSRYIAE----LTETSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLD 71 (84)
T ss_dssp HHHHHHHHHH----CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHc----ccHHHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 4566666555 5889999999999998776432 134555666655554
No 62
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=23.01 E-value=69 Score=24.01 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=19.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 015231 333 YGVSEEEACNKIKGMVEIEWM 353 (411)
Q Consensus 333 ~g~s~eeA~~~i~~~i~~~wk 353 (411)
||++.+||...+.+.++++..
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~ 30 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARA 30 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998874
No 63
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=21.90 E-value=1.7e+02 Score=28.51 Aligned_cols=80 Identities=9% Similarity=0.020 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCHHHHHhhhccccchhHHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHH
Q 015231 229 EAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARL 306 (411)
Q Consensus 229 ~~~~~~~~a~l~EA~W~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~p~i~~~~~~i~RL 306 (411)
....+++.+-..+..|...+ .||.++|++.-..-+|...+.....+| ++. .+++..+. .-.+-+...+..-+
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~---l~~~G~~lG~AFQI 255 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDA---LLHYGHDIGIAFQL 255 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHH
Confidence 33356777777788886644 579999999866555544111111222 121 34554433 35677788888888
Q ss_pred hcCccchh
Q 015231 307 DDDVHTYK 314 (411)
Q Consensus 307 ~NDi~S~~ 314 (411)
.||+..+-
T Consensus 256 ~DDiLd~~ 263 (380)
T 3lk5_A 256 RDDLLGVF 263 (380)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99988764
No 64
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=21.02 E-value=70 Score=24.42 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=19.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 015231 333 YGVSEEEACNKIKGMVEIEWM 353 (411)
Q Consensus 333 ~g~s~eeA~~~i~~~i~~~wk 353 (411)
||++.+||+..+...++++..
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~ 34 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTE 34 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999998764
No 65
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=20.22 E-value=87 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCchHHHHHHHhcCCCHHHHHHHHHHH
Q 015231 320 GDAPSSVECYVQQYGVSEEEACNKIKGM 347 (411)
Q Consensus 320 G~~~n~V~~yMke~g~s~eeA~~~i~~~ 347 (411)
|...|+|..+|+-.|+|-.||++.+.+.
T Consensus 65 g~gGd~i~fv~~~~~~sf~eA~~~La~~ 92 (103)
T 1d0q_A 65 GAGGNAFTFLMDIEGIPFVEAAKRLAAK 92 (103)
T ss_dssp CCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4456889999998999999999988874
Done!