BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015232
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 72.8 bits (177), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
A+ + +CAVCL E E+ + R LP C H FH +C+D+WL SH+ CPLCR
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 138 IPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN 197
+P F N + + L C VC+ +FE +R LP C+H FH C+D WL+++
Sbjct: 9 LPSYRFNPNNHQSEQTL-----CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRT 62
Query: 198 CPLCRA 203
CP+CRA
Sbjct: 63 CPICRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
C +CL EE + VR LP C H FH C+D WL ++ CP+CR I
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
+C VC ++ + VR LP C+H FH CI WL H +CP+CR +
Sbjct: 17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
C +C E+ + D LP C H FH C+ IWL+ CP+CR
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201
CAVCL +F+ D + P C H+FH C+ WL CPLC
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
C C E ++ D V C+HSFH C+ +W++ + CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202
K L + +C +C+ + LP C+HSF CID W H NCP+CR
Sbjct: 10 KQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 178 GCSHSFHVDCIDIWLRSHANCPLCRAGI 205
C+HSF CI+ W++ CP+CR I
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 178 GCSHSFHVDCIDIWLRSHANCPLCRAGI 205
C+HSF CI+ W++ CP+CR I
Sbjct: 70 NCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN---CPLC 201
ALRE +C +C+ F E L C H+ C++ L S N CP C
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 178 GCSHSFHVDCIDIWLRSHANCPLCRAGI 205
C+HSF CI+ W++ CP+CR I
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 179 CSHSFHVDCIDIWLRSHANCPL 200
C+H+FH CI WL++ CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205
A C +CL + ++Y LP C H+F CI W+R + CPLC+ +
Sbjct: 5 AERCPICL--EDPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201
++C +CL + + V + C H H C + L+ CPLC
Sbjct: 6 QNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLTES----PFVP 214
C +CL + T C H F DCI LRS + CP CR + S P
Sbjct: 57 CPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 113
Query: 215 IMAARIRPSLDD 226
+ ++I PS D+
Sbjct: 114 ALISKIYPSRDE 125
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIFLTE 209
C +C END + C H C+ W S CP CR I TE
Sbjct: 341 CKIC----AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTE 387
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIFLTESPFV 213
C +C END + C H C+ W S CP CR I TE V
Sbjct: 29 CKIC----AENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPIIV 79
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLTES----PFVP 214
C +CL + T C H F DCI LRS + CP CR + S P
Sbjct: 56 CPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 112
Query: 215 IMAARIRPS 223
+ ++I PS
Sbjct: 113 ALISKIYPS 121
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 175 TLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDD 226
T+ C HSF CI +L + CP+C + T P++ R +L D
Sbjct: 26 TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR----PLLNIRSDKTLQD 73
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 145 AKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201
A KT LR C +C FE + +P CSH++ CI +L CP C
Sbjct: 14 AVMKTIDDLLR----CGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 28.5 bits (62), Expect = 6.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 175 TLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDD 226
T+ C HSF CI +L + CP+C + T P++ R +L D
Sbjct: 30 TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR----PLLNIRSDKTLQD 77
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 175 TLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESPFVPIMAARIRPSLDD 226
T+ C HSF CI +L + CP+C + T P++ R +L D
Sbjct: 30 TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR----PLLNIRSDKTLQD 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,258,353
Number of Sequences: 62578
Number of extensions: 298236
Number of successful extensions: 521
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 31
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)