Query 015232
Match_columns 411
No_of_seqs 315 out of 1642
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 3.2E-17 7E-22 164.4 13.2 75 128-208 205-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 4.3E-14 9.4E-19 101.6 2.7 44 158-202 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.4 1.4E-12 3.1E-17 130.4 11.3 56 155-211 285-350 (491)
4 PHA02929 N1R/p28-like protein; 99.2 1.1E-11 2.4E-16 119.5 4.6 77 127-206 147-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 2E-11 4.3E-16 97.6 4.2 46 156-202 18-73 (73)
6 COG5540 RING-finger-containing 99.2 1.9E-11 4.2E-16 119.7 4.1 51 155-206 321-372 (374)
7 KOG0823 Predicted E3 ubiquitin 98.9 1.5E-09 3.3E-14 103.2 5.1 61 155-221 45-108 (230)
8 PLN03208 E3 ubiquitin-protein 98.9 1.3E-09 2.9E-14 101.7 4.2 49 155-207 16-80 (193)
9 PF12861 zf-Apc11: Anaphase-pr 98.8 2.1E-09 4.6E-14 88.1 3.2 52 156-207 20-83 (85)
10 cd00162 RING RING-finger (Real 98.8 3.9E-09 8.6E-14 73.7 3.6 44 159-205 1-45 (45)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 5.8E-09 1.3E-13 73.2 3.7 39 160-201 1-39 (39)
12 KOG0317 Predicted E3 ubiquitin 98.8 3.5E-09 7.6E-14 103.6 3.3 50 155-208 237-286 (293)
13 PF13920 zf-C3HC4_3: Zinc fing 98.8 4.8E-09 1E-13 77.4 3.0 46 157-206 2-48 (50)
14 KOG0802 E3 ubiquitin ligase [P 98.7 3.8E-09 8.2E-14 113.1 2.1 52 155-207 289-342 (543)
15 PHA02926 zinc finger-like prot 98.7 1E-08 2.2E-13 97.4 3.2 52 155-206 168-230 (242)
16 PF15227 zf-C3HC4_4: zinc fing 98.5 4.9E-08 1.1E-12 70.0 2.9 38 160-201 1-42 (42)
17 smart00504 Ubox Modified RING 98.5 7.6E-08 1.7E-12 73.4 4.2 46 158-207 2-47 (63)
18 KOG0320 Predicted E3 ubiquitin 98.5 4.3E-08 9.4E-13 90.2 2.7 52 155-208 129-180 (187)
19 PF00097 zf-C3HC4: Zinc finger 98.5 6.9E-08 1.5E-12 67.9 3.1 39 160-201 1-41 (41)
20 smart00184 RING Ring finger. E 98.5 9.2E-08 2E-12 64.4 2.9 38 160-201 1-39 (39)
21 PF14634 zf-RING_5: zinc-RING 98.5 9.1E-08 2E-12 68.9 3.0 44 159-203 1-44 (44)
22 TIGR00599 rad18 DNA repair pro 98.4 1.6E-07 3.6E-12 96.8 3.3 50 155-208 24-73 (397)
23 KOG0828 Predicted E3 ubiquitin 98.3 2.4E-06 5.2E-11 88.9 10.0 51 155-206 569-634 (636)
24 COG5194 APC11 Component of SCF 98.3 4.9E-07 1.1E-11 73.0 3.1 50 159-208 33-83 (88)
25 KOG1493 Anaphase-promoting com 98.2 1.9E-07 4.2E-12 74.8 -0.4 52 156-207 19-82 (84)
26 COG5574 PEX10 RING-finger-cont 98.2 6.6E-07 1.4E-11 86.9 2.4 52 155-210 213-266 (271)
27 KOG1734 Predicted RING-contain 98.1 5E-07 1.1E-11 87.9 0.4 52 155-207 222-282 (328)
28 KOG2164 Predicted E3 ubiquitin 98.1 1.7E-06 3.6E-11 90.7 2.7 54 157-214 186-244 (513)
29 PF13445 zf-RING_UBOX: RING-ty 98.1 3.5E-06 7.5E-11 60.9 3.1 34 160-195 1-35 (43)
30 smart00744 RINGv The RING-vari 98.0 5.5E-06 1.2E-10 61.4 2.9 42 159-202 1-49 (49)
31 KOG0825 PHD Zn-finger protein 97.9 2.2E-06 4.7E-11 93.1 0.1 50 156-206 122-171 (1134)
32 PF04564 U-box: U-box domain; 97.9 6.3E-06 1.4E-10 65.7 2.7 49 156-208 3-52 (73)
33 KOG2930 SCF ubiquitin ligase, 97.9 5.2E-06 1.1E-10 70.2 2.0 50 156-205 45-107 (114)
34 KOG2177 Predicted E3 ubiquitin 97.9 5.2E-06 1.1E-10 78.0 1.8 44 155-202 11-54 (386)
35 TIGR00570 cdk7 CDK-activating 97.8 1.1E-05 2.4E-10 80.6 3.6 52 157-209 3-57 (309)
36 KOG0287 Postreplication repair 97.8 5.1E-06 1.1E-10 83.2 1.0 50 155-208 21-70 (442)
37 KOG4445 Uncharacterized conser 97.8 4.8E-06 1E-10 82.2 0.7 95 115-210 57-190 (368)
38 KOG0827 Predicted E3 ubiquitin 97.8 7.6E-06 1.6E-10 83.2 1.7 45 158-202 5-52 (465)
39 KOG0804 Cytoplasmic Zn-finger 97.8 8.2E-06 1.8E-10 84.3 1.6 50 154-206 172-222 (493)
40 COG5219 Uncharacterized conser 97.8 6.6E-06 1.4E-10 90.9 0.7 52 155-206 1467-1523(1525)
41 COG5432 RAD18 RING-finger-cont 97.8 1.3E-05 2.7E-10 79.0 2.2 48 155-206 23-70 (391)
42 PF11793 FANCL_C: FANCL C-term 97.7 6.8E-06 1.5E-10 65.2 -0.1 50 157-206 2-66 (70)
43 KOG4265 Predicted E3 ubiquitin 97.7 2.6E-05 5.7E-10 78.8 2.9 49 155-207 288-337 (349)
44 KOG1039 Predicted E3 ubiquitin 97.5 4.8E-05 1E-09 77.4 2.2 52 155-206 159-221 (344)
45 PF14835 zf-RING_6: zf-RING of 97.4 4.1E-05 9E-10 59.8 0.2 50 155-209 5-54 (65)
46 KOG1645 RING-finger-containing 97.4 0.00012 2.6E-09 75.1 3.2 49 156-204 3-54 (463)
47 KOG0824 Predicted E3 ubiquitin 97.3 9.6E-05 2.1E-09 73.3 2.0 49 156-208 6-55 (324)
48 KOG0311 Predicted E3 ubiquitin 97.2 4.8E-05 1E-09 76.8 -1.4 50 155-207 41-91 (381)
49 KOG4172 Predicted E3 ubiquitin 97.2 8.9E-05 1.9E-09 56.1 -0.1 46 157-206 7-54 (62)
50 KOG1785 Tyrosine kinase negati 97.2 0.00018 4E-09 73.6 2.1 48 158-209 370-419 (563)
51 KOG0978 E3 ubiquitin ligase in 97.1 0.00016 3.4E-09 79.1 1.0 51 156-210 642-693 (698)
52 KOG3970 Predicted E3 ubiquitin 96.7 0.0016 3.5E-08 62.4 3.9 58 155-214 48-113 (299)
53 KOG4159 Predicted E3 ubiquitin 96.6 0.0011 2.4E-08 68.8 2.2 49 155-207 82-130 (398)
54 PF11789 zf-Nse: Zinc-finger o 96.5 0.0024 5.2E-08 48.9 3.0 43 155-200 9-53 (57)
55 PF05883 Baculo_RING: Baculovi 96.4 0.0011 2.4E-08 59.0 1.0 40 156-196 25-70 (134)
56 KOG1428 Inhibitor of type V ad 96.4 0.0019 4.1E-08 74.5 3.1 52 155-207 3484-3545(3738)
57 KOG0297 TNF receptor-associate 96.4 0.0017 3.6E-08 67.5 2.2 54 155-211 19-72 (391)
58 KOG0826 Predicted E3 ubiquitin 96.1 0.026 5.6E-07 57.0 8.6 48 155-205 298-345 (357)
59 KOG1941 Acetylcholine receptor 96.0 0.0023 5E-08 65.7 1.0 47 156-203 364-413 (518)
60 KOG1571 Predicted E3 ubiquitin 95.9 0.004 8.7E-08 63.3 2.3 45 155-206 303-347 (355)
61 KOG1002 Nucleotide excision re 95.9 0.0039 8.4E-08 66.1 1.7 53 152-208 531-588 (791)
62 KOG2879 Predicted E3 ubiquitin 95.8 0.0079 1.7E-07 59.3 3.5 50 154-206 236-287 (298)
63 COG5152 Uncharacterized conser 95.7 0.0039 8.5E-08 58.8 1.0 46 156-205 195-240 (259)
64 KOG3039 Uncharacterized conser 95.6 0.017 3.6E-07 56.3 4.7 55 156-210 220-274 (303)
65 KOG4692 Predicted E3 ubiquitin 95.4 0.0091 2E-07 60.7 2.5 49 155-207 420-468 (489)
66 PF10367 Vps39_2: Vacuolar sor 95.4 0.0082 1.8E-07 50.0 1.7 33 155-189 76-108 (109)
67 KOG2660 Locus-specific chromos 95.4 0.0041 9E-08 62.6 -0.1 48 155-205 13-60 (331)
68 KOG1814 Predicted E3 ubiquitin 95.2 0.0099 2.1E-07 61.5 2.0 49 155-204 182-238 (445)
69 KOG1952 Transcription factor N 95.1 0.01 2.2E-07 66.0 1.9 50 155-204 189-245 (950)
70 PHA03096 p28-like protein; Pro 95.1 0.0098 2.1E-07 59.4 1.6 46 158-203 179-231 (284)
71 PF12906 RINGv: RING-variant d 95.1 0.018 3.9E-07 42.2 2.6 40 160-201 1-47 (47)
72 COG5222 Uncharacterized conser 95.0 0.014 3E-07 58.2 2.4 47 158-207 275-323 (427)
73 KOG0801 Predicted E3 ubiquitin 95.0 0.0097 2.1E-07 54.6 1.1 30 155-185 175-204 (205)
74 PHA02862 5L protein; Provision 94.8 0.02 4.4E-07 51.6 2.5 46 157-207 2-54 (156)
75 COG5236 Uncharacterized conser 94.5 0.041 8.8E-07 56.0 4.2 46 155-204 59-106 (493)
76 KOG1813 Predicted E3 ubiquitin 94.4 0.017 3.8E-07 57.5 1.3 45 157-205 241-285 (313)
77 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.065 1.4E-06 52.6 3.9 54 155-209 111-164 (260)
78 PHA02825 LAP/PHD finger-like p 93.7 0.046 1E-06 50.1 2.5 49 155-207 6-60 (162)
79 KOG4739 Uncharacterized protei 93.2 0.029 6.3E-07 54.4 0.4 44 159-206 5-48 (233)
80 KOG1940 Zn-finger protein [Gen 92.9 0.047 1E-06 54.3 1.4 49 156-206 157-206 (276)
81 PF14447 Prok-RING_4: Prokaryo 92.7 0.069 1.5E-06 40.7 1.7 47 156-208 6-52 (55)
82 KOG0827 Predicted E3 ubiquitin 92.3 0.011 2.4E-07 60.7 -3.9 51 156-207 195-246 (465)
83 PF08746 zf-RING-like: RING-li 92.3 0.083 1.8E-06 38.1 1.7 41 160-201 1-43 (43)
84 PF14570 zf-RING_4: RING/Ubox 92.3 0.091 2E-06 39.0 1.9 44 160-204 1-46 (48)
85 KOG0298 DEAD box-containing he 92.2 0.041 8.9E-07 63.8 -0.1 48 155-205 1151-1198(1394)
86 COG5175 MOT2 Transcriptional r 92.1 0.077 1.7E-06 53.9 1.8 66 155-220 12-78 (480)
87 KOG2932 E3 ubiquitin ligase in 91.7 0.075 1.6E-06 53.4 1.2 44 158-206 91-134 (389)
88 KOG4185 Predicted E3 ubiquitin 91.5 0.14 3.1E-06 50.6 2.9 48 157-205 3-54 (296)
89 KOG1001 Helicase-like transcri 91.5 0.07 1.5E-06 59.2 0.7 46 158-208 455-502 (674)
90 KOG3268 Predicted E3 ubiquitin 91.0 0.13 2.8E-06 48.1 1.8 51 157-208 165-230 (234)
91 KOG4275 Predicted E3 ubiquitin 90.3 0.054 1.2E-06 54.0 -1.3 42 157-206 300-342 (350)
92 PF06679 DUF1180: Protein of u 90.3 2.5 5.4E-05 39.1 9.6 9 93-101 127-135 (163)
93 PF15102 TMEM154: TMEM154 prot 90.0 0.22 4.8E-06 45.1 2.4 15 9-23 17-31 (146)
94 KOG2114 Vacuolar assembly/sort 89.7 0.15 3.4E-06 57.0 1.5 42 157-204 840-881 (933)
95 PF05399 EVI2A: Ectropic viral 89.6 1.6 3.4E-05 41.9 7.9 60 47-113 128-187 (227)
96 PF10272 Tmpp129: Putative tra 89.3 0.44 9.4E-06 49.2 4.3 55 155-210 269-355 (358)
97 KOG0309 Conserved WD40 repeat- 88.7 0.24 5.2E-06 55.0 2.0 23 178-200 1047-1069(1081)
98 PF01102 Glycophorin_A: Glycop 88.7 0.54 1.2E-05 41.5 3.9 18 37-54 53-70 (122)
99 KOG3161 Predicted E3 ubiquitin 88.1 0.16 3.5E-06 55.4 0.3 45 156-203 10-54 (861)
100 COG5183 SSM4 Protein involved 86.4 0.38 8.2E-06 53.8 1.9 55 155-209 10-69 (1175)
101 PF07800 DUF1644: Protein of u 86.0 0.69 1.5E-05 42.5 3.0 33 157-192 2-46 (162)
102 KOG1609 Protein involved in mR 85.9 0.41 8.9E-06 47.1 1.7 50 157-207 78-135 (323)
103 PF14446 Prok-RING_1: Prokaryo 85.8 0.8 1.7E-05 34.9 2.8 35 156-190 4-38 (54)
104 KOG2034 Vacuolar sorting prote 84.4 0.47 1E-05 53.6 1.5 36 155-192 815-850 (911)
105 KOG3800 Predicted E3 ubiquitin 84.3 0.81 1.8E-05 45.8 2.9 48 159-206 2-51 (300)
106 KOG0802 E3 ubiquitin ligase [P 83.8 0.64 1.4E-05 50.4 2.1 49 153-209 475-523 (543)
107 KOG0269 WD40 repeat-containing 81.8 1.2 2.5E-05 49.8 3.1 42 157-200 779-820 (839)
108 PF07010 Endomucin: Endomucin; 81.4 3.4 7.4E-05 40.1 5.8 15 50-64 195-209 (259)
109 COG5220 TFB3 Cdk activating ki 80.1 0.8 1.7E-05 44.8 1.1 48 155-202 8-60 (314)
110 KOG0825 PHD Zn-finger protein 79.6 1.1 2.3E-05 50.3 2.0 52 156-207 95-155 (1134)
111 KOG3053 Uncharacterized conser 78.9 0.78 1.7E-05 45.2 0.6 51 155-206 18-82 (293)
112 KOG4362 Transcriptional regula 78.7 0.49 1.1E-05 52.3 -0.9 54 155-212 19-75 (684)
113 KOG2817 Predicted E3 ubiquitin 75.9 2.1 4.5E-05 44.6 2.7 46 156-202 333-381 (394)
114 PF03854 zf-P11: P-11 zinc fin 73.3 1.3 2.9E-05 32.9 0.4 29 179-207 18-47 (50)
115 KOG4367 Predicted Zn-finger pr 72.9 1.9 4.1E-05 45.5 1.6 35 155-193 2-36 (699)
116 KOG3899 Uncharacterized conser 71.9 1.9 4.1E-05 43.4 1.2 32 179-210 325-369 (381)
117 KOG3002 Zn finger protein [Gen 71.7 3 6.5E-05 42.2 2.7 44 155-206 46-91 (299)
118 PF05290 Baculo_IE-1: Baculovi 71.7 2.5 5.3E-05 38.0 1.8 52 156-207 79-133 (140)
119 KOG1100 Predicted E3 ubiquitin 70.2 2.5 5.4E-05 40.5 1.6 39 160-206 161-200 (207)
120 KOG1812 Predicted E3 ubiquitin 69.2 1.7 3.7E-05 45.3 0.3 37 156-193 145-182 (384)
121 KOG3113 Uncharacterized conser 69.2 4.8 0.0001 39.8 3.3 55 155-211 109-163 (293)
122 PF06024 DUF912: Nucleopolyhed 69.0 8.2 0.00018 32.7 4.4 17 49-65 62-78 (101)
123 KOG2066 Vacuolar assembly/sort 67.9 2 4.4E-05 48.1 0.6 44 156-201 783-830 (846)
124 KOG4718 Non-SMC (structural ma 65.1 3.4 7.4E-05 39.8 1.4 45 156-203 180-224 (235)
125 PF02439 Adeno_E3_CR2: Adenovi 64.3 9.2 0.0002 27.1 3.1 25 49-73 5-29 (38)
126 KOG3005 GIY-YIG type nuclease 62.0 4.4 9.6E-05 40.3 1.6 49 157-205 182-242 (276)
127 PF02891 zf-MIZ: MIZ/SP-RING z 60.4 9.2 0.0002 28.3 2.7 41 159-203 4-49 (50)
128 PLN02189 cellulose synthase 60.2 7.9 0.00017 45.1 3.4 51 156-206 33-87 (1040)
129 PF13901 DUF4206: Domain of un 59.8 6.9 0.00015 37.1 2.5 42 156-203 151-197 (202)
130 smart00249 PHD PHD zinc finger 59.4 6.2 0.00014 27.0 1.6 31 159-190 1-31 (47)
131 PF07975 C1_4: TFIIH C1-like d 58.8 8 0.00017 29.1 2.1 43 160-202 2-50 (51)
132 PF04478 Mid2: Mid2 like cell 58.2 1.9 4E-05 39.5 -1.6 9 65-73 66-74 (154)
133 KOG1829 Uncharacterized conser 55.8 4.3 9.2E-05 44.5 0.4 44 155-202 509-557 (580)
134 PRK09174 F0F1 ATP synthase sub 55.4 30 0.00065 33.0 6.0 48 33-83 37-84 (204)
135 PF01102 Glycophorin_A: Glycop 55.0 27 0.0006 30.8 5.2 16 47-62 66-81 (122)
136 KOG1812 Predicted E3 ubiquitin 53.6 9.9 0.00022 39.7 2.6 70 130-201 280-351 (384)
137 PF15298 AJAP1_PANP_C: AJAP1/P 53.5 6.8 0.00015 37.3 1.3 30 44-73 95-124 (205)
138 PF00628 PHD: PHD-finger; Int 53.0 8.7 0.00019 27.7 1.5 42 160-202 2-49 (51)
139 PLN02436 cellulose synthase A 52.8 12 0.00027 43.7 3.4 51 156-206 35-89 (1094)
140 PF07219 HemY_N: HemY protein 52.6 25 0.00055 29.7 4.5 24 49-72 20-43 (108)
141 PF00558 Vpu: Vpu protein; In 51.9 35 0.00076 28.2 5.0 9 60-68 17-25 (81)
142 PLN02638 cellulose synthase A 51.4 14 0.00031 43.3 3.6 51 156-206 16-70 (1079)
143 KOG1815 Predicted E3 ubiquitin 51.2 7.6 0.00016 41.1 1.3 36 155-193 68-103 (444)
144 KOG3579 Predicted E3 ubiquitin 50.6 8.7 0.00019 38.6 1.5 41 156-196 267-307 (352)
145 PF14569 zf-UDP: Zinc-binding 50.3 16 0.00035 29.9 2.8 52 155-206 7-62 (80)
146 PF00412 LIM: LIM domain; Int 50.1 12 0.00027 27.3 2.0 39 160-208 1-39 (58)
147 PRK13454 F0F1 ATP synthase sub 49.9 29 0.00063 32.3 4.8 48 33-83 15-62 (181)
148 PF15176 LRR19-TM: Leucine-ric 49.6 22 0.00048 30.5 3.6 25 49-73 17-41 (102)
149 PF10571 UPF0547: Uncharacteri 49.2 8.2 0.00018 25.0 0.8 23 159-183 2-24 (26)
150 PF10577 UPF0560: Uncharacteri 48.3 19 0.00041 40.9 3.8 30 44-73 266-297 (807)
151 smart00132 LIM Zinc-binding do 48.0 14 0.00031 24.3 1.9 37 159-205 1-37 (39)
152 KOG3039 Uncharacterized conser 47.5 12 0.00027 36.9 2.0 38 153-194 39-76 (303)
153 PF01363 FYVE: FYVE zinc finge 47.2 12 0.00026 28.7 1.6 38 155-192 7-44 (69)
154 PLN02915 cellulose synthase A 45.9 20 0.00043 42.0 3.7 52 155-206 13-68 (1044)
155 PF13719 zinc_ribbon_5: zinc-r 44.2 15 0.00032 25.5 1.5 26 159-184 4-36 (37)
156 PLN02400 cellulose synthase 44.1 16 0.00036 42.8 2.7 51 156-206 35-89 (1085)
157 PF06937 EURL: EURL protein; 43.4 17 0.00036 36.3 2.3 46 156-201 29-76 (285)
158 PF02009 Rifin_STEVOR: Rifin/s 43.4 11 0.00024 38.1 1.0 24 44-67 253-277 (299)
159 TIGR00622 ssl1 transcription f 43.3 28 0.0006 30.4 3.3 46 157-202 55-110 (112)
160 PF10717 ODV-E18: Occlusion-de 42.9 58 0.0013 27.0 4.9 11 39-49 16-26 (85)
161 PF07010 Endomucin: Endomucin; 39.4 1E+02 0.0022 30.3 6.8 9 131-139 232-240 (259)
162 PF13765 PRY: SPRY-associated 39.1 18 0.00039 26.3 1.4 41 251-291 5-49 (49)
163 COG5109 Uncharacterized conser 39.0 21 0.00046 36.5 2.2 45 156-201 335-382 (396)
164 KOG4577 Transcription factor L 38.4 7.2 0.00016 39.3 -1.1 46 156-211 91-136 (383)
165 PF02480 Herpes_gE: Alphaherpe 36.9 11 0.00025 40.0 0.0 24 44-67 350-373 (439)
166 PF05283 MGC-24: Multi-glycosy 34.7 1.2E+02 0.0026 28.8 6.4 6 43-48 156-161 (186)
167 KOG0824 Predicted E3 ubiquitin 34.7 16 0.00034 37.1 0.6 48 155-205 103-150 (324)
168 PF13717 zinc_ribbon_4: zinc-r 34.7 26 0.00056 24.2 1.5 26 159-184 4-36 (36)
169 KOG2807 RNA polymerase II tran 34.5 33 0.00071 35.3 2.8 46 156-202 329-374 (378)
170 KOG2068 MOT2 transcription fac 33.7 28 0.0006 35.7 2.1 49 157-206 249-298 (327)
171 PF08114 PMP1_2: ATPase proteo 33.2 63 0.0014 23.4 3.2 6 81-86 30-35 (43)
172 PF15050 SCIMP: SCIMP protein 33.0 52 0.0011 29.2 3.4 7 48-54 9-15 (133)
173 PLN02195 cellulose synthase A 32.9 43 0.00093 39.1 3.7 51 156-206 5-59 (977)
174 KOG2071 mRNA cleavage and poly 31.9 24 0.00051 38.8 1.4 36 155-191 511-556 (579)
175 TIGR03068 srtB_sig_NPQTN sorta 31.0 74 0.0016 21.9 3.1 20 49-68 10-29 (33)
176 cd00065 FYVE FYVE domain; Zinc 30.7 31 0.00068 25.3 1.5 35 158-192 3-37 (57)
177 PF15065 NCU-G1: Lysosomal tra 30.6 36 0.00077 35.3 2.4 37 37-73 307-343 (350)
178 KOG3842 Adaptor protein Pellin 30.5 38 0.00083 34.7 2.5 51 155-206 339-414 (429)
179 PF11057 Cortexin: Cortexin of 30.2 1.4E+02 0.0031 24.4 5.2 6 68-73 44-49 (81)
180 cd00350 rubredoxin_like Rubred 30.1 33 0.0007 23.1 1.4 20 179-204 7-26 (33)
181 PF09835 DUF2062: Uncharacteri 29.6 1.2E+02 0.0026 26.9 5.4 6 81-86 143-148 (154)
182 smart00064 FYVE Protein presen 29.6 36 0.00079 26.0 1.8 37 156-192 9-45 (68)
183 PF06906 DUF1272: Protein of u 28.9 62 0.0014 25.0 2.8 46 158-206 6-52 (57)
184 PF15102 TMEM154: TMEM154 prot 26.8 31 0.00066 31.5 1.0 8 186-193 128-135 (146)
185 PF08374 Protocadherin: Protoc 26.8 48 0.001 32.2 2.3 13 49-61 40-52 (221)
186 PF12191 stn_TNFRSF12A: Tumour 26.5 24 0.00051 31.5 0.2 22 45-66 75-96 (129)
187 KOG4323 Polycomb-like PHD Zn-f 26.4 39 0.00084 36.3 1.8 49 156-204 167-224 (464)
188 PF05151 PsbM: Photosystem II 26.4 1E+02 0.0022 21.0 3.2 22 45-66 6-27 (31)
189 PHA03291 envelope glycoprotein 26.4 1E+02 0.0022 32.1 4.7 20 45-64 283-302 (401)
190 PRK01844 hypothetical protein; 26.3 1.2E+02 0.0027 24.4 4.2 21 47-67 3-23 (72)
191 PF04710 Pellino: Pellino; In 26.1 22 0.00048 37.3 0.0 33 168-204 299-337 (416)
192 TIGR01477 RIFIN variant surfac 26.0 77 0.0017 32.9 3.8 20 48-67 312-331 (353)
193 PF08374 Protocadherin: Protoc 25.8 38 0.00083 32.8 1.5 22 47-68 35-56 (221)
194 smart00647 IBR In Between Ring 25.8 24 0.00051 26.2 0.1 22 171-192 38-59 (64)
195 PF04277 OAD_gamma: Oxaloaceta 25.0 1.8E+02 0.0039 22.8 5.1 25 49-73 5-29 (79)
196 PRK10927 essential cell divisi 24.4 68 0.0015 32.8 3.1 27 41-67 28-54 (319)
197 PTZ00046 rifin; Provisional 24.3 84 0.0018 32.7 3.7 19 49-67 318-336 (358)
198 PF11359 gpUL132: Glycoprotein 24.2 1.6E+02 0.0034 28.7 5.3 20 54-73 60-79 (235)
199 KOG3637 Vitronectin receptor, 24.0 44 0.00095 39.4 1.8 27 46-72 976-1002(1030)
200 KOG2979 Protein involved in DN 23.9 43 0.00094 33.3 1.5 45 156-203 175-221 (262)
201 PF06024 DUF912: Nucleopolyhed 23.8 29 0.00062 29.4 0.3 27 41-67 57-83 (101)
202 PF07423 DUF1510: Protein of u 23.7 59 0.0013 31.5 2.4 20 48-67 15-34 (217)
203 PF05283 MGC-24: Multi-glycosy 23.3 2E+02 0.0043 27.3 5.7 20 43-62 161-180 (186)
204 PF10717 ODV-E18: Occlusion-de 22.8 97 0.0021 25.8 3.1 14 37-50 19-32 (85)
205 KOG2231 Predicted E3 ubiquitin 22.7 59 0.0013 36.5 2.4 43 159-205 2-51 (669)
206 PHA02849 putative transmembran 22.5 2E+02 0.0043 23.7 4.8 22 41-62 10-31 (82)
207 TIGR03024 arch_pef_cterm PEF-C 22.5 1.1E+02 0.0025 20.0 2.7 13 44-56 3-15 (26)
208 PF09451 ATG27: Autophagy-rela 22.2 1.4E+02 0.003 29.5 4.7 10 37-46 192-201 (268)
209 PF07649 C1_3: C1-like domain; 22.0 73 0.0016 20.7 1.9 29 159-188 2-30 (30)
210 PF15050 SCIMP: SCIMP protein 21.5 1.4E+02 0.0031 26.5 4.0 12 54-65 10-21 (133)
211 PF06844 DUF1244: Protein of u 21.0 56 0.0012 26.0 1.3 12 182-193 11-22 (68)
212 TIGR01195 oadG_fam sodium pump 20.9 1.7E+02 0.0037 23.9 4.2 24 50-73 9-32 (82)
213 PF00974 Rhabdo_glycop: Rhabdo 20.6 25 0.00054 38.1 -1.0 9 65-73 467-475 (501)
214 KOG2041 WD40 repeat protein [G 20.6 55 0.0012 37.2 1.7 47 155-205 1129-1184(1189)
215 PF05568 ASFV_J13L: African sw 20.3 1.4E+02 0.003 27.5 3.9 10 42-51 24-33 (189)
216 PF04689 S1FA: DNA binding pro 20.3 71 0.0015 25.3 1.8 20 43-62 8-27 (69)
217 PRK11827 hypothetical protein; 20.0 39 0.00084 26.3 0.3 20 189-208 2-21 (60)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.2e-17 Score=164.37 Aligned_cols=75 Identities=39% Similarity=0.881 Sum_probs=64.4
Q ss_pred CCCCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCC-CCccCcCcc
Q 015232 128 YGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN-CPLCRAGIF 206 (411)
Q Consensus 128 ~gls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~t-CPlCR~~i~ 206 (411)
.++.+..++++|...|....... ..+.|+||||+|+.+|++++|| |+|.||..||++||.++.+ ||+||+++.
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~-----~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDED-----ATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccC-----CCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 46788999999999998775431 2269999999999999999999 9999999999999987755 999999875
Q ss_pred CC
Q 015232 207 LT 208 (411)
Q Consensus 207 ~~ 208 (411)
..
T Consensus 279 ~~ 280 (348)
T KOG4628|consen 279 TD 280 (348)
T ss_pred CC
Confidence 43
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.44 E-value=4.3e-14 Score=101.63 Aligned_cols=44 Identities=48% Similarity=1.228 Sum_probs=40.3
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
++|+||+++|..++.++.++ |||+||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999998 999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.4e-12 Score=130.37 Aligned_cols=56 Identities=32% Similarity=0.922 Sum_probs=47.1
Q ss_pred cCCCcccccccc-cccC---------ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCCC
Q 015232 155 REARDCAVCLLE-FEEN---------DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP 211 (411)
Q Consensus 155 ~~~~~C~ICle~-f~~~---------~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 211 (411)
.++..|.||+|+ |+.+ .+.+.|| |||++|.+|++.|++++++||+||.++..++..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd~~~ 350 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFDQSS 350 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccccCC
Confidence 578899999999 5544 2457888 999999999999999999999999997655443
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.20 E-value=1.1e-11 Score=119.50 Aligned_cols=77 Identities=27% Similarity=0.647 Sum_probs=58.4
Q ss_pred CCCCCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCce----EEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 127 PYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDY----VRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 127 ~~gls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~----~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
..+..+..++.+|.....-... .....+.+|+||++.+.+++. +.+++.|+|.||..||..|+..+.+||+||
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~---~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR 223 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKL---YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhh---hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCC
Confidence 4567888999999876543221 112456899999999876531 234555999999999999999999999999
Q ss_pred cCcc
Q 015232 203 AGIF 206 (411)
Q Consensus 203 ~~i~ 206 (411)
..+.
T Consensus 224 ~~~~ 227 (238)
T PHA02929 224 TPFI 227 (238)
T ss_pred CEee
Confidence 9874
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.17 E-value=2e-11 Score=97.55 Aligned_cols=46 Identities=39% Similarity=0.956 Sum_probs=36.5
Q ss_pred CCCcccccccccccC----------ceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 156 EARDCAVCLLEFEEN----------DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 156 ~~~~C~ICle~f~~~----------~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
.++.|+||++.+.+. -.+...+ |||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999432 2344555 999999999999999999999997
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.9e-11 Score=119.73 Aligned_cols=51 Identities=45% Similarity=1.089 Sum_probs=46.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~ 206 (411)
....+|+|||++|..++++++|| |+|.||..|+++|+. -+..||+||+.|.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCC
Confidence 45689999999999999999999 999999999999997 4557999999875
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.5e-09 Score=103.25 Aligned_cols=61 Identities=26% Similarity=0.653 Sum_probs=46.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC---CCCCccCcCccCCCCCCchhhhhhcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH---ANCPLCRAGIFLTESPFVPIMAARIR 221 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~i~~~~~~~~~~~~~~~~ 221 (411)
....+|.||||.-+++ +++. |||.||..||.+||+.+ +.||+||..|.. ..++|....+..
T Consensus 45 ~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~--~~vvPlYGrG~~ 108 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI--DTVVPLYGRGSK 108 (230)
T ss_pred CCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCcccccccc--ceEEeeeccCCC
Confidence 5678999999996665 4444 99999999999999643 349999998854 455666665554
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.88 E-value=1.3e-09 Score=101.75 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=40.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----------------CCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----------------HANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----------------~~tCPlCR~~i~~ 207 (411)
.++.+|+||++.++++ ++++ |||+||..||..|+.. +..||+||..|..
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 4578999999998775 5566 9999999999999842 2469999998854
No 9
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.83 E-value=2.1e-09 Score=88.09 Aligned_cols=52 Identities=33% Similarity=0.831 Sum_probs=39.8
Q ss_pred CCCccccccccccc--------Cc-eEEEcCCCCceechhHHHHHHhc---CCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEE--------ND-YVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~--------~~-~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~i~~ 207 (411)
.++.|.||...|+. ++ -..++..|+|.||..||.+||.. +.+||+||+....
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 47889999999973 22 12334459999999999999964 4579999998644
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.81 E-value=3.9e-09 Score=73.71 Aligned_cols=44 Identities=52% Similarity=1.195 Sum_probs=36.3
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGI 205 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i 205 (411)
+|+||++.+ .+.+.+.+ |||.||..|++.|+.. +..||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33455555 9999999999999987 67799998753
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.78 E-value=5.8e-09 Score=73.20 Aligned_cols=39 Identities=41% Similarity=1.075 Sum_probs=32.8
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlC 201 (411)
|+||++.+.+ .+++++ |||+||..||..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999877 356676 99999999999999888899998
No 12
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.5e-09 Score=103.61 Aligned_cols=50 Identities=34% Similarity=0.792 Sum_probs=42.9
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
.....|.+|||..+++ --+| |||+||..||.+|...+..||+||..+...
T Consensus 237 ~a~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3457899999998776 4666 999999999999999999999999987554
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.76 E-value=4.8e-09 Score=77.40 Aligned_cols=46 Identities=33% Similarity=0.846 Sum_probs=38.7
Q ss_pred CCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+..|.||++...+ +..+| |||. |+..|+..|+.....||+||.+|.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4679999998654 57777 9999 999999999999999999999873
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.8e-09 Score=113.11 Aligned_cols=52 Identities=31% Similarity=0.836 Sum_probs=46.1
Q ss_pred cCCCcccccccccccCce--EEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDY--VRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~--~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
..+..|+||+|++..+++ .+.++ |+|+||..|+..|++++++||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 568899999999988765 67888 99999999999999999999999995543
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.68 E-value=1e-08 Score=97.38 Aligned_cols=52 Identities=33% Similarity=0.903 Sum_probs=39.9
Q ss_pred cCCCcccccccccccC-----ceEEEcCCCCceechhHHHHHHhcC------CCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEN-----DYVRTLPGCSHSFHVDCIDIWLRSH------ANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~-----~~~~~Lp~C~H~FH~~CI~~Wl~~~------~tCPlCR~~i~ 206 (411)
..+.+|+||||..-+. ..-.+|+.|+|.||..||..|...+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4578999999986432 1234666799999999999998643 35999998764
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.55 E-value=4.9e-08 Score=70.00 Aligned_cols=38 Identities=37% Similarity=0.968 Sum_probs=29.2
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHhcC----CCCCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----ANCPLC 201 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----~tCPlC 201 (411)
|+||++.|+++ +.|+ |||.|+..||..|.+.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999887 7787 99999999999998543 359988
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.55 E-value=7.6e-08 Score=73.38 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=40.4
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
..|+||++.++++ .+++ |||+|+..||..|+..+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999886 5666 99999999999999888899999988743
No 18
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.3e-08 Score=90.15 Aligned_cols=52 Identities=31% Similarity=0.648 Sum_probs=42.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
+....|+|||+.+... +.+-.+|||+||..||+.-+.....||+|+..|...
T Consensus 129 ~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 4557899999998765 334345999999999999999999999999877554
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.52 E-value=6.9e-08 Score=67.94 Aligned_cols=39 Identities=51% Similarity=1.242 Sum_probs=33.0
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHh--cCCCCCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR--SHANCPLC 201 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlC 201 (411)
|+||++.+.+. ..+++ |||.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998775 35676 999999999999998 55569998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=9.2e-08 Score=64.39 Aligned_cols=38 Identities=42% Similarity=1.152 Sum_probs=32.0
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLC 201 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlC 201 (411)
|+||++.. ....+++ |||.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3457777 999999999999997 66679987
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.48 E-value=9.1e-08 Score=68.94 Aligned_cols=44 Identities=27% Similarity=0.779 Sum_probs=37.7
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 203 (411)
.|.||++.|.+.....+++ |||+||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996556677887 9999999999999866678999974
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.6e-07 Score=96.78 Aligned_cols=50 Identities=32% Similarity=0.601 Sum_probs=43.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
+....|+||++.|..+ ++++ |||.||..||..|+.....||+|+..+...
T Consensus 24 e~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 4677999999999776 4666 999999999999998888899999987543
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.4e-06 Score=88.92 Aligned_cols=51 Identities=29% Similarity=0.792 Sum_probs=39.1
Q ss_pred cCCCcccccccccccCc---e-----------EEEcCCCCceechhHHHHHHh-cCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEND---Y-----------VRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~---~-----------~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~ 206 (411)
....+|+|||..+.--. . -.+.| |.|+||..|++.|+. .+-.||+||+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45679999999875311 1 12346 999999999999998 5558999999874
No 24
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.29 E-value=4.9e-07 Score=73.04 Aligned_cols=50 Identities=32% Similarity=0.680 Sum_probs=35.2
Q ss_pred cccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 159 DCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 159 ~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
.|+-|+..+..++ -..+...|+|.||..||..||..+..||+|++.....
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3444444443444 2333334999999999999999999999999886543
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.9e-07 Score=74.78 Aligned_cols=52 Identities=31% Similarity=0.806 Sum_probs=38.3
Q ss_pred CCCccccccccccc--------C-ceEEEcCCCCceechhHHHHHHhc---CCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEE--------N-DYVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~--------~-~~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~i~~ 207 (411)
.++.|-||...|.. + +-..++..|.|.||..||.+|+.. +..||+||+....
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 45589999998864 1 222344459999999999999954 4459999987643
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.6e-07 Score=86.92 Aligned_cols=52 Identities=35% Similarity=0.807 Sum_probs=41.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHH-HHhcCCC-CCccCcCccCCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI-WLRSHAN-CPLCRAGIFLTES 210 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~-Wl~~~~t-CPlCR~~i~~~~~ 210 (411)
..+..|.||++..... ..++ |||+||..||.. |-..+.. ||+||+.+...+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 4578899999987665 5566 999999999998 9766655 9999998766543
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5e-07 Score=87.93 Aligned_cols=52 Identities=31% Similarity=0.657 Sum_probs=42.7
Q ss_pred cCCCcccccccccccCc-------eEEEcCCCCceechhHHHHHH--hcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEEND-------YVRTLPGCSHSFHVDCIDIWL--RSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~-------~~~~Lp~C~H~FH~~CI~~Wl--~~~~tCPlCR~~i~~ 207 (411)
.++..|+||-..+.... +.-.|. |+|+||..||.-|. ..+++||.||..+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 56789999988886654 566787 99999999999995 567789999987743
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.7e-06 Score=90.67 Aligned_cols=54 Identities=28% Similarity=0.512 Sum_probs=40.9
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhc-----CCCCCccCcCccCCCCCCch
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-----HANCPLCRAGIFLTESPFVP 214 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~~i~~~~~~~~~ 214 (411)
+..|+|||+..... ..+. |||+||..||-.++.. ...||+|+..|...+...+.
T Consensus 186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 77899999986554 3444 9999999999877643 34599999998876655443
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.05 E-value=3.5e-06 Score=60.92 Aligned_cols=34 Identities=29% Similarity=0.737 Sum_probs=21.5
Q ss_pred ccccccccccC-ceEEEcCCCCceechhHHHHHHhcC
Q 015232 160 CAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSH 195 (411)
Q Consensus 160 C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~ 195 (411)
|+||+| |.+. ...++|+ |||+|+.+||+.++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 7554 4568898 99999999999998743
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.97 E-value=5.5e-06 Score=61.41 Aligned_cols=42 Identities=24% Similarity=0.756 Sum_probs=32.0
Q ss_pred cccccccccccCceEEEcCCCC-----ceechhHHHHHHhc--CCCCCccC
Q 015232 159 DCAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLRS--HANCPLCR 202 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~~--~~tCPlCR 202 (411)
.|-||++.. +++...+.| |. |.+|..|++.|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999943 334445677 85 99999999999954 44799995
No 31
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.92 E-value=2.2e-06 Score=93.08 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=42.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|++||..+.++......+ |+|+||..||+.|-..-++||+||..+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 3467999999988876666666 9999999999999999999999998653
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.92 E-value=6.3e-06 Score=65.67 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=37.8
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~ 208 (411)
+...|+||.+.|.++ ++++ |||.|...||+.|+.. +.+||+|+..+...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 356799999999887 6777 9999999999999987 88899998887543
No 33
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.2e-06 Score=70.24 Aligned_cols=50 Identities=28% Similarity=0.702 Sum_probs=37.1
Q ss_pred CCCccccccccc-------------ccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 156 EARDCAVCLLEF-------------EENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 156 ~~~~C~ICle~f-------------~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
..+.|+||..-+ ...+-.+....|+|.||..||..||+.++.||+|..+.
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 456788876543 12233444445999999999999999999999997764
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.2e-06 Score=78.03 Aligned_cols=44 Identities=36% Similarity=0.854 Sum_probs=39.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
.+...|+||++.|..+ .+++ |+|.||..||..+......||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 5778999999999998 7887 999999999998877555699999
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.1e-05 Score=80.63 Aligned_cols=52 Identities=19% Similarity=0.517 Sum_probs=37.6
Q ss_pred CCcccccccccc-cCc-eEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCCC
Q 015232 157 ARDCAVCLLEFE-END-YVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLTE 209 (411)
Q Consensus 157 ~~~C~ICle~f~-~~~-~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~~ 209 (411)
+..|+||+.+-- .++ ++.+.+ |||.||..||+..+ .....||.|+..+...+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 468999999632 333 333444 99999999999854 55667999998775543
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.84 E-value=5.1e-06 Score=83.23 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=43.9
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
+....|.||.|-|..+ .++| |+|.||.-||..+|..+..||.|+..+.+.
T Consensus 21 D~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 4567899999999887 6677 999999999999999999999999877544
No 37
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.82 E-value=4.8e-06 Score=82.20 Aligned_cols=95 Identities=22% Similarity=0.526 Sum_probs=65.0
Q ss_pred CCCCcccccccCCCCCCHHHHhcCCceeeccccccc----------------hhhhcCCCcccccccccccCceEEEcCC
Q 015232 115 FNHPIDSFRVYSPYGLDDSVIKTIPLSLFTAKNKTT----------------SKALREARDCAVCLLEFEENDYVRTLPG 178 (411)
Q Consensus 115 ~~~~~~~~~~~~~~gls~~~i~~Lp~~~~~~~~~~~----------------~~~~~~~~~C~ICle~f~~~~~~~~Lp~ 178 (411)
|......+....++||++..+..|....-...+... .+..-....|+|||.-|.+++...+++
T Consensus 57 YP~esPtvtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~- 135 (368)
T KOG4445|consen 57 YPAESPTVTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVTA- 135 (368)
T ss_pred CCCcCCceEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCceeeeh-
Confidence 333334556677999999888776554433222110 011123568999999999999888888
Q ss_pred CCceechhHHHHHHhc-----------------------CCCCCccCcCccCCCC
Q 015232 179 CSHSFHVDCIDIWLRS-----------------------HANCPLCRAGIFLTES 210 (411)
Q Consensus 179 C~H~FH~~CI~~Wl~~-----------------------~~tCPlCR~~i~~~~~ 210 (411)
|.|.||..|+..+|.. +..||+||..|...+.
T Consensus 136 C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 136 CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 9999999999887631 2249999998865543
No 38
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.6e-06 Score=83.22 Aligned_cols=45 Identities=24% Similarity=0.873 Sum_probs=34.6
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhc---CCCCCccC
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS---HANCPLCR 202 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR 202 (411)
..|.||.+-+...+.+.-+..|||+||..|+..|+.. +.+||+|+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4799995555444455555559999999999999963 34799998
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.79 E-value=8.2e-06 Score=84.27 Aligned_cols=50 Identities=36% Similarity=0.824 Sum_probs=39.2
Q ss_pred hcCCCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 154 LREARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 154 ~~~~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
..+...|+||||.+...- .++... |.|.||..|+..| ...+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 356789999999997754 334444 9999999999999 4568999997554
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.77 E-value=6.6e-06 Score=90.89 Aligned_cols=52 Identities=31% Similarity=0.805 Sum_probs=39.0
Q ss_pred cCCCcccccccccccCc---eEEEcCCCCceechhHHHHHHh--cCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEND---YVRTLPGCSHSFHVDCIDIWLR--SHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~---~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~i~ 206 (411)
...++|+||...+..-+ .-...+.|.|-||..|+.+|+. .+.+||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45689999998876211 1223345999999999999996 4557999998764
No 41
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.75 E-value=1.3e-05 Score=79.02 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=41.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+.-..|-||-+.|..+ ..++ |||-||.-||...|..+..||+||.+..
T Consensus 23 Ds~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 4567899999998876 4555 9999999999999999999999998654
No 42
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.72 E-value=6.8e-06 Score=65.24 Aligned_cols=50 Identities=26% Similarity=0.719 Sum_probs=23.3
Q ss_pred CCcccccccccc-cCce-EEEcC--CCCceechhHHHHHHhc----C-------CCCCccCcCcc
Q 015232 157 ARDCAVCLLEFE-ENDY-VRTLP--GCSHSFHVDCIDIWLRS----H-------ANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~-~~~~-~~~Lp--~C~H~FH~~CI~~Wl~~----~-------~tCPlCR~~i~ 206 (411)
+.+|.||++.+. .++. ..+-+ .|++.||..||.+||.. + .+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999999876 3322 23332 69999999999999852 1 13999999874
No 43
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.6e-05 Score=78.76 Aligned_cols=49 Identities=31% Similarity=0.713 Sum_probs=40.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
+...+|.|||.+-++ ..+|| |.|. .|..|.+...-+++.||+||.+|..
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 457899999998766 48899 9997 6788988877788889999998843
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=4.8e-05 Score=77.42 Aligned_cols=52 Identities=31% Similarity=0.855 Sum_probs=40.2
Q ss_pred cCCCcccccccccccCc----eEEEcCCCCceechhHHHHHH--hc-----CCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEND----YVRTLPGCSHSFHVDCIDIWL--RS-----HANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~----~~~~Lp~C~H~FH~~CI~~Wl--~~-----~~tCPlCR~~i~ 206 (411)
..+.+|.||+|..-+.. ...+||+|.|.||..||..|- .+ ...||.||...-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35789999999976542 134567799999999999997 33 456999998653
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.38 E-value=4.1e-05 Score=59.78 Aligned_cols=50 Identities=28% Similarity=0.739 Sum_probs=25.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE 209 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~ 209 (411)
+....|.+|.+.++.+ +.+..|.|+||..||..-+. ..||+|+.+.-..|
T Consensus 5 e~lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 5 EELLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp HHTTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred HHhcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 4567899999998876 44556999999999988554 34999988764443
No 46
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00012 Score=75.10 Aligned_cols=49 Identities=29% Similarity=0.733 Sum_probs=37.4
Q ss_pred CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhc--CCCCCccCcC
Q 015232 156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRS--HANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~ 204 (411)
....|+|||+.+... +...+.+.|||.|...||+.||.. ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 467899999999753 444444459999999999999952 2349999764
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=9.6e-05 Score=73.27 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=38.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~ 208 (411)
...+|+||+....-+ ..|+ |+|.||..||+--. ....+|++||.+|...
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 356899999875544 6676 99999999998554 4556799999998654
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=4.8e-05 Score=76.77 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=41.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~ 207 (411)
..+..|.|||+-++.. ...+.|.|-||..||..-+ ..++.||.||..+..
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 4678999999998765 4555699999999999877 567789999987754
No 49
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=8.9e-05 Score=56.13 Aligned_cols=46 Identities=26% Similarity=0.578 Sum_probs=32.9
Q ss_pred CCcccccccccccCceEEEcCCCCce-echhHHH-HHHhcCCCCCccCcCcc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
+++|.||+|.-.+. ++.. |||+ .|.+|-. .|-..+..||+||++|.
T Consensus 7 ~dECTICye~pvds---VlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 47899999874443 3333 9997 4666754 45457888999999874
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.17 E-value=0.00018 Score=73.61 Aligned_cols=48 Identities=33% Similarity=0.779 Sum_probs=38.7
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhc--CCCCCccCcCccCCC
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--HANCPLCRAGIFLTE 209 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~i~~~~ 209 (411)
.-|-||-|. +..+++-| |||..|..|+..|-.. .++||.||..|--.+
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 579999876 33477888 9999999999999743 568999999885443
No 51
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00016 Score=79.15 Aligned_cols=51 Identities=24% Similarity=0.651 Sum_probs=40.3
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCCCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLTES 210 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~~~ 210 (411)
.-..|++|-..+++. ++++|+|+||..|+..-+ .++..||.|-+.+-..|.
T Consensus 642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 456899999877663 444599999999999988 567789999888765543
No 52
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0016 Score=62.42 Aligned_cols=58 Identities=26% Similarity=0.576 Sum_probs=46.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc--------CCCCCccCcCccCCCCCCch
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--------HANCPLCRAGIFLTESPFVP 214 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--------~~tCPlCR~~i~~~~~~~~~ 214 (411)
+....|..|--.+..+|.++.. |-|+||.+|+++|-.+ ...||.|-.+|+......-|
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsP 113 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSP 113 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccch
Confidence 4667899999999999988876 9999999999999642 23599999999876544433
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0011 Score=68.82 Aligned_cols=49 Identities=35% Similarity=0.795 Sum_probs=42.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
..+.+|.||+.-+..+ +++| |||.||..||+.-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999999888776 6777 99999999999988877889999998864
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.49 E-value=0.0024 Score=48.85 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=28.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc--CCCCCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--HANCPL 200 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPl 200 (411)
.....|+|.+..|+++ ++-.. |||+|-...|..|+.. ...||+
T Consensus 9 ~~~~~CPiT~~~~~~P--V~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP--VKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSE--EEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCC--cCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 3567899999999876 45444 9999999999999943 335998
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.44 E-value=0.0011 Score=58.98 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCCcccccccccccCceEEEcCCCC------ceechhHHHHHHhcCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCS------HSFHVDCIDIWLRSHA 196 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~------H~FH~~CI~~Wl~~~~ 196 (411)
...+|.||++.+.+.+-++.++ || |+||.+|+++|-..++
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhcc
Confidence 3678999999998855566666 66 9999999999954333
No 56
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.44 E-value=0.0019 Score=74.49 Aligned_cols=52 Identities=29% Similarity=0.620 Sum_probs=40.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC----------CCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----------ANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----------~tCPlCR~~i~~ 207 (411)
+.++.|.||..+--.....+.|. |+|+||..|...-|++. ..||+|+.+|.+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 56889999987765566778887 99999999987655432 259999998854
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.40 E-value=0.0017 Score=67.48 Aligned_cols=54 Identities=28% Similarity=0.613 Sum_probs=44.2
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP 211 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 211 (411)
+++..|+||...+.++-. ... |||.||..|+..|+..+..||.|+..+...+..
T Consensus 19 ~~~l~C~~C~~vl~~p~~--~~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQ--TTT-CGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCC--CCC-CCCcccccccchhhccCcCCcccccccchhhcc
Confidence 567889999999988722 134 999999999999999999999998877655443
No 58
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.026 Score=56.97 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=37.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
.....|+||+..-.++..+.+ -|-+||..||-+.+..+..||+=..++
T Consensus 298 ~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 456789999998766532222 699999999999999999999865443
No 59
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.04 E-value=0.0023 Score=65.66 Aligned_cols=47 Identities=32% Similarity=0.785 Sum_probs=38.4
Q ss_pred CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhcCC--CCCccCc
Q 015232 156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 203 (411)
-+.-|..|=|.+-.. +.+.-|| |.|+||..|+...|.++. +||.||.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356799999888654 4677898 999999999999996554 6999983
No 60
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.004 Score=63.32 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=34.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
...+.|.||+++.++ ...+| |||+=| |...-.... +||+||..|.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~l~-~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKHLP-QCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHHhhCC-CCchhHHHHH
Confidence 456789999999766 57788 999955 888764433 3999998773
No 61
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.85 E-value=0.0039 Score=66.12 Aligned_cols=53 Identities=23% Similarity=0.619 Sum_probs=39.6
Q ss_pred hhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-----cCCCCCccCcCccCC
Q 015232 152 KALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----SHANCPLCRAGIFLT 208 (411)
Q Consensus 152 ~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~i~~~ 208 (411)
++..+..+|.+|-+.-++. ++.. |.|.||..||.++.. .+.+||+|...+..+
T Consensus 531 ~enk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred ccccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 3346778999999885553 4554 999999999988863 345799998766443
No 62
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0079 Score=59.30 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=37.7
Q ss_pred hcCCCcccccccccccCceEEEcCCCCceechhHHHHHHh--cCCCCCccCcCcc
Q 015232 154 LREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR--SHANCPLCRAGIF 206 (411)
Q Consensus 154 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~i~ 206 (411)
...+.+|++|-+.-..+ -.+.+ |+|+||.-||..-.. ..-+||.|-.++.
T Consensus 236 ~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35788999999875444 34454 999999999997654 3467999977653
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.71 E-value=0.0039 Score=58.84 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=38.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
-...|.||.++|+.+ ++.. |||.||..|...=++....|-+|....
T Consensus 195 IPF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhh
Confidence 345899999999887 5555 999999999998888888899997654
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.017 Score=56.31 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=48.3
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTES 210 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~ 210 (411)
....|+||.+.+.+...+.+|..|||+|+.+|.++.+.....||+|-.++-+.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 4578999999999988888888899999999999999999999999887755544
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.0091 Score=60.70 Aligned_cols=49 Identities=24% Similarity=0.494 Sum_probs=40.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.+++.|+||... +-..+..| |+|.=|+.||.+-|.+.+.|=.|++.+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 467889999765 33346677 99999999999999999999999998753
No 66
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.39 E-value=0.0082 Score=49.97 Aligned_cols=33 Identities=30% Similarity=0.736 Sum_probs=27.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCID 189 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~ 189 (411)
.+...|++|-..+.. ....+.| |||+||..|++
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 456789999999977 5667777 99999999985
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.37 E-value=0.0041 Score=62.57 Aligned_cols=48 Identities=27% Similarity=0.576 Sum_probs=40.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
.....|.+|-.-|.+. .+...|-|.||..||...|.....||+|...|
T Consensus 13 n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 4567899999888775 23335999999999999999999999997765
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0099 Score=61.49 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=39.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--------CCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--------ANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--------~tCPlCR~~ 204 (411)
....+|.||+++..-.+..+.+| |+|+||..|+..++..+ -.||-|+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 46788999999987768888898 99999999999997422 248877653
No 69
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.12 E-value=0.01 Score=66.00 Aligned_cols=50 Identities=30% Similarity=0.765 Sum_probs=38.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-------CCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-------ANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-------~tCPlCR~~ 204 (411)
....+|.||.+.+.....+---..|-|+||..||..|-... -.||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 46689999999998766554444588999999999997431 139999843
No 70
>PHA03096 p28-like protein; Provisional
Probab=95.12 E-value=0.0098 Score=59.36 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=34.0
Q ss_pred CcccccccccccCc----eEEEcCCCCceechhHHHHHHhc---CCCCCccCc
Q 015232 158 RDCAVCLLEFEEND----YVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRA 203 (411)
Q Consensus 158 ~~C~ICle~f~~~~----~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~ 203 (411)
..|.||+|...... .-.+|+.|.|.||..||..|... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 78999999886532 34467789999999999999742 234555543
No 71
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.08 E-value=0.018 Score=42.24 Aligned_cols=40 Identities=33% Similarity=0.941 Sum_probs=27.0
Q ss_pred ccccccccccCceEEEcCCCC-----ceechhHHHHHHh--cCCCCCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLR--SHANCPLC 201 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~--~~~tCPlC 201 (411)
|-||++.-.+.+ ..+.| |+ ...|..|++.|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999877665 33455 54 4789999999995 45669987
No 72
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.01 E-value=0.014 Score=58.22 Aligned_cols=47 Identities=32% Similarity=0.774 Sum_probs=35.9
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCc-CccC
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRA-GIFL 207 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~-~i~~ 207 (411)
..|+.|-.-+... +++ +.|+|.||..||..-| .....||.|.+ +|..
T Consensus 275 LkCplc~~Llrnp--~kT-~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNP--MKT-PCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCc--ccC-ccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 5799998887776 333 5599999999999766 56778999954 4443
No 73
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.0097 Score=54.60 Aligned_cols=30 Identities=30% Similarity=0.802 Sum_probs=27.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceech
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHV 185 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~ 185 (411)
++..+|.||||+++.++.+..|| |-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 45578999999999999999999 9999996
No 74
>PHA02862 5L protein; Provisional
Probab=94.75 E-value=0.02 Score=51.60 Aligned_cols=46 Identities=22% Similarity=0.687 Sum_probs=34.1
Q ss_pred CCcccccccccccCceEEEcCCCC-----ceechhHHHHHHh--cCCCCCccCcCccC
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLR--SHANCPLCRAGIFL 207 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~--~~~tCPlCR~~i~~ 207 (411)
.+.|=||+++-++. .-| |. ..-|..|+.+|+. ++..|++|+.+...
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 35799999985332 234 54 6889999999995 44569999988654
No 75
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.51 E-value=0.041 Score=56.00 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=37.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHH--HhcCCCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW--LRSHANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W--l~~~~tCPlCR~~ 204 (411)
++...|.||-+.+.- ..++| |+|..|..|.-.. |..++.||+||+.
T Consensus 59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccc
Confidence 567889999887644 57888 9999999998643 6778889999975
No 76
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.017 Score=57.46 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=38.8
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
...|-||...|..+ ++.. |+|.||..|...=++....|.+|-..+
T Consensus 241 Pf~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccc
Confidence 46799999999887 5554 999999999998888888999997765
No 77
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.76 E-value=0.065 Score=52.64 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=41.9
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE 209 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~ 209 (411)
.....|+|+..+|......+.+..|||+|...||+.-- ....||+|-.++...|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 56789999999996666555555599999999999873 3557999988765443
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.67 E-value=0.046 Score=50.07 Aligned_cols=49 Identities=20% Similarity=0.626 Sum_probs=34.6
Q ss_pred cCCCcccccccccccCceEEEcC-CCCc---eechhHHHHHHhc--CCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLP-GCSH---SFHVDCIDIWLRS--HANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp-~C~H---~FH~~CI~~Wl~~--~~tCPlCR~~i~~ 207 (411)
..+..|=||.++-. +. .-| .|.. .-|..|++.|+.. ...|++|+.....
T Consensus 6 ~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 46778999998843 22 234 2433 6699999999953 4469999987644
No 79
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.18 E-value=0.029 Score=54.42 Aligned_cols=44 Identities=27% Similarity=0.556 Sum_probs=32.0
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.|..|.-.- .++...++. |+|+||..|...-.. ..||+||..|-
T Consensus 5 hCn~C~~~~-~~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFP-SQDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIR 48 (233)
T ss_pred EeccccccC-CCCceeeee-chhhhhhhhcccCCc--cccccccceee
Confidence 477776543 366777776 999999999876322 28999998863
No 80
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.89 E-value=0.047 Score=54.25 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=40.0
Q ss_pred CCCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|+||.+.+-... .+..++ |||..|..|++.....+-+||+|.. +.
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~ 206 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PG 206 (276)
T ss_pred ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hH
Confidence 3445999999987765 456676 9999999999999877799999988 53
No 81
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.68 E-value=0.069 Score=40.68 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=33.9
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
....|..|... +.+-.+++ |||+.+..|.+-+ +-+.||+|.+++...
T Consensus 6 ~~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 34567777655 33447788 9999999987764 556799999887543
No 82
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.011 Score=60.72 Aligned_cols=51 Identities=22% Similarity=0.559 Sum_probs=44.0
Q ss_pred CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|+||.+.++.. +++..+- |||.+|.+||.+||.....||.|++.+..
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 356799999999886 6677776 99999999999999888889999998754
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.28 E-value=0.083 Score=38.11 Aligned_cols=41 Identities=24% Similarity=0.703 Sum_probs=23.6
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHhcCC--CCCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLC 201 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlC 201 (411)
|.+|.+....+...... .|+=.+|..|++.++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888887777444333 3888999999999986555 69988
No 84
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.26 E-value=0.091 Score=39.01 Aligned_cols=44 Identities=27% Similarity=0.552 Sum_probs=20.8
Q ss_pred ccccccccccCc-eEEEcCCCCceechhHHHHHHh-cCCCCCccCcC
Q 015232 160 CAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAG 204 (411)
Q Consensus 160 C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~ 204 (411)
|++|.+++...+ ...-- .||+..+..|...-+. ....||-||.+
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999994443 33333 4888888888777665 46679999975
No 85
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.15 E-value=0.041 Score=63.80 Aligned_cols=48 Identities=23% Similarity=0.628 Sum_probs=39.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
.....|.||++.++... .+.. |||.+|..|+..|+..+..||+|+...
T Consensus 1151 ~~~~~c~ic~dil~~~~--~I~~-cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQG--GIAG-CGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcC--Ceee-echhHhhhHHHHHHHHhccCcchhhhh
Confidence 34568999999998532 2333 999999999999999999999998544
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.11 E-value=0.077 Score=53.90 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=42.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCCCCCCchhhhhhc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLTESPFVPIMAARI 220 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~~~~~~~~~~~~~ 220 (411)
++++.|+.|+|.+...++-..-..||...|.-|-..-- .-+..||-||+...+.....+++..+++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ee~ 78 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSPEEL 78 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEecCHHHH
Confidence 45667999999998877544443489766655533321 2344699999987666655555544443
No 87
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.075 Score=53.42 Aligned_cols=44 Identities=32% Similarity=0.744 Sum_probs=30.7
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
--|.-|=-.+ .-.-+.+| |+|+||.+|... ...+.||.|-..|.
T Consensus 91 HfCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 4566663332 22457888 999999999875 44678999976654
No 88
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.14 Score=50.59 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=38.6
Q ss_pred CCcccccccccccCc---eEEEcCCCCceechhHHHHHHhcC-CCCCccCcCc
Q 015232 157 ARDCAVCLLEFEEND---YVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGI 205 (411)
Q Consensus 157 ~~~C~ICle~f~~~~---~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i 205 (411)
...|-||-++|...+ ..++|. |||.++..|+..-+... ..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 357999999998763 456776 99999999999877544 3599999985
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.45 E-value=0.07 Score=59.23 Aligned_cols=46 Identities=30% Similarity=0.641 Sum_probs=35.1
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhc--CCCCCccCcCccCC
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--HANCPLCRAGIFLT 208 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--~~tCPlCR~~i~~~ 208 (411)
..|.||++ .+...+.. |+|.||..|+..-+.. ...||+||..+...
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 34455665 9999999999887643 23599999877543
No 90
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.13 Score=48.14 Aligned_cols=51 Identities=27% Similarity=0.692 Sum_probs=32.8
Q ss_pred CCcccccccccccCc----eEEEcCCCCceechhHHHHHHhcC-----------CCCCccCcCccCC
Q 015232 157 ARDCAVCLLEFEEND----YVRTLPGCSHSFHVDCIDIWLRSH-----------ANCPLCRAGIFLT 208 (411)
Q Consensus 157 ~~~C~ICle~f~~~~----~~~~Lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~i~~~ 208 (411)
...|.||..---++. .+--. .||.-||.-|+..||..- ..||.|-.+|..+
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCcccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 345667754333321 11222 499999999999998531 1499998887543
No 91
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.054 Score=54.03 Aligned_cols=42 Identities=31% Similarity=0.627 Sum_probs=29.9
Q ss_pred CCcccccccccccCceEEEcCCCCcee-chhHHHHHHhcCCCCCccCcCcc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSF-HVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~F-H~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
..-|.||++.-. ....|+ |||.. |..|-... +.||+||+-|.
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence 678999988744 468888 99974 44454332 37999998763
No 92
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=90.29 E-value=2.5 Score=39.15 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.2
Q ss_pred hcccCCCCC
Q 015232 93 RRYYLPSSN 101 (411)
Q Consensus 93 rr~~~~~s~ 101 (411)
|++......
T Consensus 127 RkYgvl~~~ 135 (163)
T PF06679_consen 127 RKYGVLTTR 135 (163)
T ss_pred eeecccCCC
Confidence 455544433
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=89.98 E-value=0.22 Score=45.12 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=7.0
Q ss_pred CCCCCcccccccccC
Q 015232 9 PPISPTTVYDITSSS 23 (411)
Q Consensus 9 ~~~~~~t~~~~~~~~ 23 (411)
.+.-.||.++..++.
T Consensus 17 ~~~~ttt~s~~asvT 31 (146)
T PF15102_consen 17 LPEETTTPSTFASVT 31 (146)
T ss_pred cCCcccccccccccc
Confidence 334444455555544
No 94
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=0.15 Score=57.02 Aligned_cols=42 Identities=24% Similarity=0.710 Sum_probs=32.3
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcC
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG 204 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 204 (411)
...|..|--.++-+ .+..- |||.||.+|++ .....||-|+..
T Consensus 840 ~skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchh
Confidence 35899998887665 33333 99999999999 455679999873
No 95
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=89.59 E-value=1.6 Score=41.93 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCC
Q 015232 47 PPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRRWKRWRRRRRRRYYLPSSNGDPLDSPPFYPS 113 (411)
Q Consensus 47 ~~lI~iI~Ila~~Flvv~~~~lI~r~~~~~~~~i~rr~rr~R~rrrrr~~~~~s~~d~l~s~~~~~~ 113 (411)
..+++-++|+++.|++.++++|-...+.+.+..+.|...-- ..++-+|+|.+.+..-||.
T Consensus 128 ~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ~g-------KRqpRSNGDFLASSgLWPa 187 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQVG-------KRQPRSNGDFLASSGLWPA 187 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccCCCcccceeeccccCcc
Confidence 34445555555566665555554444433333433322210 1124478887766665543
No 96
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.32 E-value=0.44 Score=49.21 Aligned_cols=55 Identities=24% Similarity=0.623 Sum_probs=36.0
Q ss_pred cCCCcccccccccccCceEEEc--------------C-----CCCceechhHHHHHHhc-------------CCCCCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTL--------------P-----GCSHSFHVDCIDIWLRS-------------HANCPLCR 202 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~L--------------p-----~C~H~FH~~CI~~Wl~~-------------~~tCPlCR 202 (411)
++.+.|.-|+..-.+- ++... + .|.-++|.+|+.+|+.. +..||+||
T Consensus 269 ~e~e~CigC~~~~~~v-kl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNV-KLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCc-EEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 5678899998864221 21111 0 14466789999999843 23599999
Q ss_pred cCccCCCC
Q 015232 203 AGIFLTES 210 (411)
Q Consensus 203 ~~i~~~~~ 210 (411)
+.+...|.
T Consensus 348 a~FCilDV 355 (358)
T PF10272_consen 348 AKFCILDV 355 (358)
T ss_pred ccceeeee
Confidence 98776554
No 97
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.73 E-value=0.24 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.882 Sum_probs=21.0
Q ss_pred CCCceechhHHHHHHhcCCCCCc
Q 015232 178 GCSHSFHVDCIDIWLRSHANCPL 200 (411)
Q Consensus 178 ~C~H~FH~~CI~~Wl~~~~tCPl 200 (411)
.|+|+.|..|..+|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999999889984
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.68 E-value=0.54 Score=41.49 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=7.7
Q ss_pred CCCCCCCCCChHHHHHHH
Q 015232 37 NNTKPPVDFSPPLIAMVV 54 (411)
Q Consensus 37 ~~~~~~~~fs~~lI~iI~ 54 (411)
...+..-+|+-+.|+.|+
T Consensus 53 ~~~ql~h~fs~~~i~~Ii 70 (122)
T PF01102_consen 53 ERSQLVHRFSEPAIIGII 70 (122)
T ss_dssp ---SSSSSSS-TCHHHHH
T ss_pred CCcccccCccccceeehh
Confidence 333444577777654443
No 99
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.16 Score=55.37 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=32.4
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 203 (411)
+...|.||+..|-....+-+...|||..|..|++.- -+.+|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 345799998888765433333359999999999875 445788 654
No 100
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.44 E-value=0.38 Score=53.82 Aligned_cols=55 Identities=22% Similarity=0.559 Sum_probs=39.8
Q ss_pred cCCCcccccccccccCceEEEcCCCC---ceechhHHHHHHhc--CCCCCccCcCccCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCS---HSFHVDCIDIWLRS--HANCPLCRAGIFLTE 209 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~---H~FH~~CI~~Wl~~--~~tCPlCR~~i~~~~ 209 (411)
++...|-||..+=..++.+..-.+|. ...|.+|+.+|+.. ...|-+|+.++..++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 35578999998866666555443354 57899999999964 445999998765443
No 101
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.97 E-value=0.69 Score=42.52 Aligned_cols=33 Identities=24% Similarity=0.597 Sum_probs=21.1
Q ss_pred CCcccccccccccCceEEEcC------C-----CCc-eechhHHHHHH
Q 015232 157 ARDCAVCLLEFEENDYVRTLP------G-----CSH-SFHVDCIDIWL 192 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp------~-----C~H-~FH~~CI~~Wl 192 (411)
+..|+||||--.+. +.|- + |+- .=|..|++++-
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHH
Confidence 56899999975443 3332 1 332 34778999885
No 102
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.89 E-value=0.41 Score=47.13 Aligned_cols=50 Identities=26% Similarity=0.648 Sum_probs=36.5
Q ss_pred CCcccccccccccCce-EEEcCCCC-----ceechhHHHHHHh--cCCCCCccCcCccC
Q 015232 157 ARDCAVCLLEFEENDY-VRTLPGCS-----HSFHVDCIDIWLR--SHANCPLCRAGIFL 207 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~-~~~Lp~C~-----H~FH~~CI~~Wl~--~~~tCPlCR~~i~~ 207 (411)
+..|-||.++...... ..+.| |. +..|..|++.|+. ....|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 5789999998755431 33444 54 7779999999996 56679999886543
No 103
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.84 E-value=0.8 Score=34.87 Aligned_cols=35 Identities=31% Similarity=0.752 Sum_probs=30.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHH
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI 190 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~ 190 (411)
....|.+|-+.|++++.+++-|.||-.+|..|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45679999999999999999999999999998644
No 104
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.42 E-value=0.47 Score=53.58 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=28.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL 192 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl 192 (411)
+.++.|.+|.-.+-.. .-.+.+ |||.||.+||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4678999998887654 445666 99999999998763
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.30 E-value=0.81 Score=45.76 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=33.8
Q ss_pred ccccccccc-ccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCcc
Q 015232 159 DCAVCLLEF-EENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIF 206 (411)
Q Consensus 159 ~C~ICle~f-~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~ 206 (411)
.|++|..+. -.++.......|+|-.|..|++.-+ .....||.|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 589997653 3444333333499999999999887 56667999976543
No 106
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=0.64 Score=50.37 Aligned_cols=49 Identities=33% Similarity=0.726 Sum_probs=40.4
Q ss_pred hhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE 209 (411)
Q Consensus 153 ~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~ 209 (411)
..+..+.|.||+++. ..++.+ |. |..|+.+|+..+..||+|+..+..++
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 345678999999998 346666 88 99999999999999999998876544
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.76 E-value=1.2 Score=49.79 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=32.6
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPL 200 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPl 200 (411)
...|.+|-..+.. .....+.|||.-|..|+.+|+..+.-||.
T Consensus 779 ~~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 4579999776543 23445569999999999999998888876
No 108
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=81.39 E-value=3.4 Score=40.14 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 015232 50 IAMVVVVATAFLVVT 64 (411)
Q Consensus 50 I~iI~Ila~~Flvv~ 64 (411)
|++|+|.+.+|+++.
T Consensus 195 IaliVitl~vf~Lvg 209 (259)
T PF07010_consen 195 IALIVITLSVFTLVG 209 (259)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 109
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.09 E-value=0.8 Score=44.80 Aligned_cols=48 Identities=33% Similarity=0.664 Sum_probs=35.5
Q ss_pred cCCCccccccccc-ccCc-eEEEcCCCCceechhHHHHHH-hcCCCCC--ccC
Q 015232 155 REARDCAVCLLEF-EEND-YVRTLPGCSHSFHVDCIDIWL-RSHANCP--LCR 202 (411)
Q Consensus 155 ~~~~~C~ICle~f-~~~~-~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCP--lCR 202 (411)
..+..|+||..+- -.++ ++-+-|.|-|-.|..|++.-+ .....|| -|-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 3566899998764 3344 444555699999999999987 5667799 774
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.62 E-value=1.1 Score=50.26 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCCcccccccccccCc---eEEEcCCCCceechhHHHHHHhc------CCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEEND---YVRTLPGCSHSFHVDCIDIWLRS------HANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~---~~~~Lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~i~~ 207 (411)
..+.|.||.-++.+++ .+..+..|+|.||..||..|+.+ +-.|+.|...|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 4567888887777632 22233359999999999999742 3358999877643
No 111
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.89 E-value=0.78 Score=45.23 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=35.6
Q ss_pred cCCCcccccccccccCceE-EEcCCCC-----ceechhHHHHHHhcC--------CCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYV-RTLPGCS-----HSFHVDCIDIWLRSH--------ANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~-~~Lp~C~-----H~FH~~CI~~Wl~~~--------~tCPlCR~~i~ 206 (411)
+.+..|=||+..=++.-.. -+-| |- |..|..|+..|+..+ .+||-|++...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4677899999875554322 2333 53 999999999998422 24999998754
No 112
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.70 E-value=0.49 Score=52.31 Aligned_cols=54 Identities=26% Similarity=0.560 Sum_probs=40.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc---CCCCCccCcCccCCCCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS---HANCPLCRAGIFLTESPF 212 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~---~~tCPlCR~~i~~~~~~~ 212 (411)
....+|.||+..+..+ ..+ +|.|.|+..|+..-+.. ...||+|+..+...+...
T Consensus 19 ~k~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E 75 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE 75 (684)
T ss_pred hhhccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence 4567899999999887 344 49999999999866543 446999998776544433
No 113
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.85 E-value=2.1 Score=44.56 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=38.5
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC---CCCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA---NCPLCR 202 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~---tCPlCR 202 (411)
....|+|=.+.-.+.+....|. |||+..++-|.+..++.. .||.|=
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4578999999888878888888 999999999999876544 599993
No 114
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=73.26 E-value=1.3 Score=32.86 Aligned_cols=29 Identities=28% Similarity=0.805 Sum_probs=21.6
Q ss_pred CC-ceechhHHHHHHhcCCCCCccCcCccC
Q 015232 179 CS-HSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 179 C~-H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
|. |..|..|+...|.....||+|..+++.
T Consensus 18 C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp -SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred ecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 65 999999999999999999999988753
No 115
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=72.93 E-value=1.9 Score=45.46 Aligned_cols=35 Identities=34% Similarity=0.598 Sum_probs=29.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR 193 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~ 193 (411)
+++..|+||..-|+++ ++|+ |+|..|..|...-+.
T Consensus 2 eeelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCc---eEee-cccHHHHHHHHhhcc
Confidence 3567899999999887 8898 999999999886553
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.93 E-value=1.9 Score=43.38 Aligned_cols=32 Identities=22% Similarity=0.632 Sum_probs=24.8
Q ss_pred CCceechhHHHHHHh-------------cCCCCCccCcCccCCCC
Q 015232 179 CSHSFHVDCIDIWLR-------------SHANCPLCRAGIFLTES 210 (411)
Q Consensus 179 C~H~FH~~CI~~Wl~-------------~~~tCPlCR~~i~~~~~ 210 (411)
|.-++|..|+.+|+. ++.+||+||+.+...|.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 667888999999874 34479999998876554
No 117
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=71.69 E-value=3 Score=42.16 Aligned_cols=44 Identities=27% Similarity=0.620 Sum_probs=34.2
Q ss_pred cCCCcccccccccccCceEEEcCCC--CceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGC--SHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C--~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.+..+|+||.+.+..+ +.. | ||+-|..|-. +..+.||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccc----cee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 4677899999999887 443 6 5888888765 35567999999875
No 118
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=71.68 E-value=2.5 Score=37.97 Aligned_cols=52 Identities=19% Similarity=0.578 Sum_probs=36.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHH-HHHH--hcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCI-DIWL--RSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI-~~Wl--~~~~tCPlCR~~i~~ 207 (411)
...+|.||.|.-.+..-++--.-||-..|..|- .-|- ..+..||+|++.+-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 456899999987665433322249988888865 5775 456679999998643
No 119
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.17 E-value=2.5 Score=40.49 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=27.9
Q ss_pred ccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
|-+|-+. ...|..+| |.|+ +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888665 45688888 9975 55567765 345999988653
No 120
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.23 E-value=1.7 Score=45.32 Aligned_cols=37 Identities=27% Similarity=0.732 Sum_probs=27.4
Q ss_pred CCCcccccc-cccccCceEEEcCCCCceechhHHHHHHh
Q 015232 156 EARDCAVCL-LEFEENDYVRTLPGCSHSFHVDCIDIWLR 193 (411)
Q Consensus 156 ~~~~C~ICl-e~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~ 193 (411)
...+|.||. +.....+...++. |+|.||.+|....+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~-C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLK-CGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhc-ccchhhhHHhHHHhh
Confidence 467899999 4444434444554 999999999998875
No 121
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.22 E-value=4.8 Score=39.79 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=40.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP 211 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 211 (411)
.....|+|---+|........+..|||+|-..-+.+- ...+|++|...+...|..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 3467899988888776655555569999998777764 356799999887655543
No 122
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=69.00 E-value=8.2 Score=32.72 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015232 49 LIAMVVVVATAFLVVTY 65 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~ 65 (411)
.++++++++.+.++|++
T Consensus 62 ~iili~lls~v~IlVil 78 (101)
T PF06024_consen 62 NIILISLLSFVCILVIL 78 (101)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 33344444433333333
No 123
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.86 E-value=2 Score=48.14 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCcc
Q 015232 156 EARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201 (411)
Q Consensus 156 ~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlC 201 (411)
.+..|.-|.+..-.. +.++++- |||+||+.|+..-+.+++ |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 456899998876532 4567776 999999999987765554 6666
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.06 E-value=3.4 Score=39.78 Aligned_cols=45 Identities=22% Similarity=0.643 Sum_probs=35.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 203 (411)
....|.+|.+-.-.+ +....|+-.+|..|+...++....||.|-.
T Consensus 180 nlk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 456899998876555 223348899999999999999889999943
No 125
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.29 E-value=9.2 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 49 LIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
+|.+|+.+++.++++++..++--||
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCc 29 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACC 29 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544443344
No 126
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=62.02 E-value=4.4 Score=40.27 Aligned_cols=49 Identities=29% Similarity=0.631 Sum_probs=35.2
Q ss_pred CCcccccccccccCceEEEc---CCCCceechhHHHHHHh-c--------CCCCCccCcCc
Q 015232 157 ARDCAVCLLEFEENDYVRTL---PGCSHSFHVDCIDIWLR-S--------HANCPLCRAGI 205 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~L---p~C~H~FH~~CI~~Wl~-~--------~~tCPlCR~~i 205 (411)
..+|-+|.+++.+.+..+.. +.|+-++|..|+..-+. . ...||.|+..+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 46899999999655544433 25889999999998442 1 23599998743
No 127
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=60.40 E-value=9.2 Score=28.33 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=19.3
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhc-----CCCCCccCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-----HANCPLCRA 203 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 203 (411)
.|+|....++.+ ++-.. |.|+-+.+ ++.||.. .-.||+|.+
T Consensus 4 ~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 588888887664 56665 99985432 3456532 224999975
No 128
>PLN02189 cellulose synthase
Probab=60.16 E-value=7.9 Score=45.08 Aligned_cols=51 Identities=20% Similarity=0.480 Sum_probs=37.3
Q ss_pred CCCcccccccccc---cCceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFE---ENDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~---~~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
....|.||-|++. +++.-+....|+--.|..|.+ +.-..++.||-||+..-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4568999999975 344444444588889999996 34467778999998764
No 129
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.81 E-value=6.9 Score=37.11 Aligned_cols=42 Identities=29% Similarity=0.714 Sum_probs=29.8
Q ss_pred CCCcccccccc-----cccCceEEEcCCCCceechhHHHHHHhcCCCCCccCc
Q 015232 156 EARDCAVCLLE-----FEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~-----f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~ 203 (411)
.+..|-||-++ |+ .+.+..-+.|+-+||..|... ..||-|-+
T Consensus 151 kGfiCe~C~~~~~IfPF~-~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQ-IDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCC-CCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 45778888653 11 135666677999999999873 66999943
No 130
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=58.80 E-value=8 Score=29.13 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=22.1
Q ss_pred ccccccccccCc------eEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 160 CAVCLLEFEEND------YVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 160 C~ICle~f~~~~------~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
|--|+..|.... ..-.-+.|++.|+.+|=.=--+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 556677766642 3455667999999998543224445699883
No 132
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=58.20 E-value=1.9 Score=39.54 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=3.5
Q ss_pred HHHHHHHhc
Q 015232 65 YSRLISRHL 73 (411)
Q Consensus 65 ~~~lI~r~~ 73 (411)
++.++..||
T Consensus 66 il~lvf~~c 74 (154)
T PF04478_consen 66 ILALVFIFC 74 (154)
T ss_pred HHHhheeEE
Confidence 333333344
No 133
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=55.80 E-value=4.3 Score=44.53 Aligned_cols=44 Identities=27% Similarity=0.650 Sum_probs=27.0
Q ss_pred cCCCcccccccc-----cccCceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 155 REARDCAVCLLE-----FEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 155 ~~~~~C~ICle~-----f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
.....|.+|... |+ .+.++..-.|+++||..|... ....||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 346678888322 11 222333334999999988765 334499993
No 134
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.38 E-value=30 Score=32.96 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 015232 33 NNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRR 83 (411)
Q Consensus 33 ~~s~~~~~~~~~fs~~lI~iI~Ila~~Flvv~~~~lI~r~~~~~~~~i~rr 83 (411)
.+++.++.|+.|++.+.. -++++++.|+++ ++++.+++++|+..++..
T Consensus 37 ~~~~~~~~p~~~~~~~~~-~l~w~~I~FliL--~~lL~k~~~~pI~~vLe~ 84 (204)
T PRK09174 37 AEHGSGVFPPFDSTHYAS-QLLWLAITFGLF--YLFMSRVILPRIGGIIET 84 (204)
T ss_pred cccccCCCCCCcchhccH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 444445578888775332 222222233322 223455555666666654
No 135
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.96 E-value=27 Score=30.83 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 015232 47 PPLIAMVVVVATAFLV 62 (411)
Q Consensus 47 ~~lI~iI~Ila~~Flv 62 (411)
+.+|++=++.+++.++
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 4555565555554444
No 136
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.61 E-value=9.9 Score=39.67 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=43.1
Q ss_pred CCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCc--eEEEcCCCCceechhHHHHHHhcCCCCCcc
Q 015232 130 LDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEEND--YVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201 (411)
Q Consensus 130 ls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~--~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlC 201 (411)
++=+..+++....+.+......-+ ..-..|++|.-.++-.+ ...+.. |||.||..|...|...+..|..|
T Consensus 280 ~sC~eykk~~~~~~~d~~~~~~la-~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 280 LSCEEYKKLNPEEYVDDITLKYLA-KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCHHHHHHhCCcccccHHHHHHHH-HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 455555555543333222111111 44677888877664433 334454 99999999999998888878665
No 137
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=53.51 E-value=6.8 Score=37.34 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 44 DFSPPLIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 44 ~fs~~lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
++.+..|+-|-|-+++.|+.++..||.|+|
T Consensus 95 Glavh~~iTITvSlImViaAliTtlvlK~C 124 (205)
T PF15298_consen 95 GLAVHQIITITVSLIMVIAALITTLVLKNC 124 (205)
T ss_pred CCCceEEEEEeeehhHHHHHhhhhhhhhhh
Confidence 444444444444444444555556667776
No 138
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.03 E-value=8.7 Score=27.68 Aligned_cols=42 Identities=24% Similarity=0.581 Sum_probs=28.3
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHh------cCCCCCccC
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR------SHANCPLCR 202 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~------~~~tCPlCR 202 (411)
|.||...- +.+.++.-..|+..||..|+..=.. ..-.||.|+
T Consensus 2 C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 88998843 3444555556999999999874321 234588875
No 139
>PLN02436 cellulose synthase A
Probab=52.78 E-value=12 Score=43.68 Aligned_cols=51 Identities=18% Similarity=0.464 Sum_probs=37.0
Q ss_pred CCCcccccccccc---cCceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFE---ENDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~---~~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
....|.||-|++. +++.-+....|+--.|..|.+ +.-..++.||-||+..-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4568999999963 455444444588889999995 33456778999998764
No 140
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.57 E-value=25 Score=29.73 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 015232 49 LIAMVVVVATAFLVVTYSRLISRH 72 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~lI~r~ 72 (411)
++++++.++++++++-++..+...
T Consensus 20 ~~~l~~~~~~l~ll~~ll~~~~~~ 43 (108)
T PF07219_consen 20 LILLLLLFVVLYLLLRLLRRLLSL 43 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444443
No 141
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=51.86 E-value=35 Score=28.16 Aligned_cols=9 Identities=0% Similarity=0.194 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 015232 60 FLVVTYSRL 68 (411)
Q Consensus 60 Flvv~~~~l 68 (411)
++.++++.+
T Consensus 17 iiaIvvW~i 25 (81)
T PF00558_consen 17 IIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 142
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=51.41 E-value=14 Score=43.27 Aligned_cols=51 Identities=14% Similarity=0.365 Sum_probs=37.2
Q ss_pred CCCccccccccccc---CceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEE---NDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~---~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
....|.||=|++.. ++.-+....|+--.|..|.+ +.-..++.||-|++..-
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45689999999743 44444444577779999996 44567888999998764
No 143
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.16 E-value=7.6 Score=41.10 Aligned_cols=36 Identities=22% Similarity=0.615 Sum_probs=29.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR 193 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~ 193 (411)
.....|-||.+.+.. .+..+. |||.|+..|....+.
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhh
Confidence 456789999999765 455565 999999999999885
No 144
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.60 E-value=8.7 Score=38.64 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=30.1
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA 196 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~ 196 (411)
....|.+|.|.+++..-|.--.-=.|.||..|-.+-++++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 45789999999998754432112369999999999886543
No 145
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=50.29 E-value=16 Score=29.88 Aligned_cols=52 Identities=13% Similarity=0.347 Sum_probs=21.2
Q ss_pred cCCCccccccccccc---CceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEE---NDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~---~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
.....|.||=|++.. ++..+....|+--.|..|.+ +.-..++.||-|++..-
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 356789999998754 33222222477778888987 44467778999997653
No 146
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=50.12 E-value=12 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=26.9
Q ss_pred ccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 160 CAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 160 C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
|..|...+...+.+... -+..||..|+ .|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEcccc--------ccCCCCCccCCC
Confidence 67788888766554333 6788998775 578888776443
No 147
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=49.85 E-value=29 Score=32.27 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Q 015232 33 NNNNNNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHLLPPLIRIFRR 83 (411)
Q Consensus 33 ~~s~~~~~~~~~fs~~lI~iI~Ila~~Flvv~~~~lI~r~~~~~~~~i~rr 83 (411)
-.+|.+|.++.+++++...++ .+++.|++ +++++.+++++|+..++..
T Consensus 15 ~~~~~~gmp~ld~~t~~~q~~-~~lI~F~i--L~~ll~k~l~~PI~~~l~~ 62 (181)
T PRK13454 15 HAASAPGMPQLDFSTFPNQIF-WLLVTLVA--IYFVLTRVALPRIGAVLAE 62 (181)
T ss_pred cccCCCCCCCCcHHhcchHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 345666777777764332222 22222222 2233456665666666654
No 148
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=49.57 E-value=22 Score=30.47 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 49 LIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
+-.+++|+++++++-+++.|.+||=
T Consensus 17 W~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345555555555555555556663
No 149
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=49.25 E-value=8.2 Score=25.00 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=13.0
Q ss_pred cccccccccccCceEEEcCCCCcee
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSF 183 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~F 183 (411)
.|+-|-.++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466676665332 34445577766
No 150
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=48.26 E-value=19 Score=40.93 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=15.6
Q ss_pred CCChH-HHHHHHHHH-HHHHHHHHHHHHHHhc
Q 015232 44 DFSPP-LIAMVVVVA-TAFLVVTYSRLISRHL 73 (411)
Q Consensus 44 ~fs~~-lI~iI~Ila-~~Flvv~~~~lI~r~~ 73 (411)
++..+ .+.+++||+ +++|+++++.++..||
T Consensus 266 Di~~YHT~fLl~ILG~~~livl~lL~vLl~yC 297 (807)
T PF10577_consen 266 DITTYHTVFLLAILGGTALIVLILLCVLLCYC 297 (807)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55553 456666666 4444444444444445
No 151
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=47.96 E-value=14 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.564 Sum_probs=24.2
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
.|..|-+.+...+..... =+..||..|. .|..|...|
T Consensus 1 ~C~~C~~~i~~~~~~~~~--~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRA--LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEe--CCccccccCC--------CCcccCCcC
Confidence 378888888776333333 4788888775 467776654
No 152
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.46 E-value=12 Score=36.91 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=30.8
Q ss_pred hhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc
Q 015232 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS 194 (411)
Q Consensus 153 ~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~ 194 (411)
....-+.|..||..+.++ ++.+ =||+|+..||.+++..
T Consensus 39 siK~FdcCsLtLqPc~dP---vit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDP---VITP-DGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCC---ccCC-CCeeeeHHHHHHHHHH
Confidence 335678899999999887 5555 8999999999998643
No 153
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=47.20 E-value=12 Score=28.75 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=19.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL 192 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl 192 (411)
.+...|.+|...|.--..-..-..||++|+..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 45678999999996644334444599999998886543
No 154
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=45.93 E-value=20 Score=41.95 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=37.4
Q ss_pred cCCCccccccccccc---CceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEE---NDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~---~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
-....|.||=|+... ++.-+....|+--.|..|.+ +.-..++.||-|++..-
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 356789999998754 44444444577779999995 33466778999998764
No 155
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=44.17 E-value=15 Score=25.50 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=15.7
Q ss_pred cccccccccccCce-------EEEcCCCCceec
Q 015232 159 DCAVCLLEFEENDY-------VRTLPGCSHSFH 184 (411)
Q Consensus 159 ~C~ICle~f~~~~~-------~~~Lp~C~H~FH 184 (411)
.|+-|...|+.++. ...-+.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777765542 233445777764
No 156
>PLN02400 cellulose synthase
Probab=44.09 E-value=16 Score=42.78 Aligned_cols=51 Identities=16% Similarity=0.377 Sum_probs=36.3
Q ss_pred CCCccccccccccc---CceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEE---NDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~---~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
....|.||=|++.. ++.-+....|+--.|..|.+ +.-..++.||-||+..-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 45689999999754 44333333477778999985 44567788999998754
No 157
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=43.38 E-value=17 Score=36.30 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCCcccccccccccCceEE-EcCCCCceechhHHHHH-HhcCCCCCcc
Q 015232 156 EARDCAVCLLEFEENDYVR-TLPGCSHSFHVDCIDIW-LRSHANCPLC 201 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~-~Lp~C~H~FH~~CI~~W-l~~~~tCPlC 201 (411)
...-|.||+|---.+-.-- .|-.=.=.-|.+|.++| |..+..||--
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCcc
Confidence 3456777776544332111 11101124589999999 5778889943
No 158
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=43.38 E-value=11 Score=38.14 Aligned_cols=24 Identities=4% Similarity=0.296 Sum_probs=10.0
Q ss_pred CCChHH-HHHHHHHHHHHHHHHHHH
Q 015232 44 DFSPPL-IAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 44 ~fs~~l-I~iI~Ila~~Flvv~~~~ 67 (411)
++...+ +.+|+||++++|+|++++
T Consensus 253 ~~~t~I~aSiiaIliIVLIMvIIYL 277 (299)
T PF02009_consen 253 SLTTAIIASIIAILIIVLIMVIIYL 277 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 334444444444444333
No 159
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.29 E-value=28 Score=30.43 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=34.5
Q ss_pred CCcccccccccccCc----------eEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 157 ARDCAVCLLEFEEND----------YVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 157 ~~~C~ICle~f~~~~----------~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
...|--|+..|.... ..-.-+.|++.|+.+|-.-+-+.-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 356999999886531 1223556999999999888777777899995
No 160
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=42.93 E-value=58 Score=27.04 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=5.4
Q ss_pred CCCCCCCChHH
Q 015232 39 TKPPVDFSPPL 49 (411)
Q Consensus 39 ~~~~~~fs~~l 49 (411)
......+++-+
T Consensus 16 ~~~~~~l~pn~ 26 (85)
T PF10717_consen 16 NNNLNGLNPNT 26 (85)
T ss_pred cccccccChhH
Confidence 33445566543
No 161
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=39.41 E-value=1e+02 Score=30.26 Aligned_cols=9 Identities=22% Similarity=0.457 Sum_probs=3.7
Q ss_pred CHHHHhcCC
Q 015232 131 DDSVIKTIP 139 (411)
Q Consensus 131 s~~~i~~Lp 139 (411)
+++.++.|.
T Consensus 232 dke~vkllt 240 (259)
T PF07010_consen 232 DKESVKLLT 240 (259)
T ss_pred cccceeEEE
Confidence 334444443
No 162
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=39.06 E-value=18 Score=26.32 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=23.2
Q ss_pred CCCCCCCCccCcccccccccCCCC---CCccccccccccc-cccc
Q 015232 251 ASTNGSEITPCVDDVAVAINNNNF---NSEERFNGRDFLL-KRSY 291 (411)
Q Consensus 251 ast~~~E~~p~~d~~s~~~~~n~~---Ns~~~F~~rd~vl-krs~ 291 (411)
+.++...+...++..+........ ++++||+...+|| +++|
T Consensus 5 p~TAh~~L~lS~d~k~v~~~~~~~~~p~~peRF~~~~~VLg~~~F 49 (49)
T PF13765_consen 5 PNTAHPSLVLSEDGKSVRYSEQPQNYPDNPERFDHWPQVLGSEGF 49 (49)
T ss_dssp TTTS-TTEEEETTSSEEEE-SST-S--S-TTS-SSSSEEEBS--B
T ss_pred cccCCCCeEECCCCeEEEEccCCccCCCCCCccCCcCeEEECCCC
Confidence 345555555666666666554443 8899999889999 8876
No 163
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=38.96 E-value=21 Score=36.47 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=34.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC---CCCcc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA---NCPLC 201 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~---tCPlC 201 (411)
....|++-.+.-.+.+....|. |||+.-..-++..-+... .||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 3468999888877777778887 999999988887654322 49999
No 164
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=38.36 E-value=7.2 Score=39.27 Aligned_cols=46 Identities=17% Similarity=0.479 Sum_probs=35.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTESP 211 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~~ 211 (411)
-...|.-|.+.+-..+.|+.. =.|+||..|.. |-+|++.+...|..
T Consensus 91 fGTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~--------C~iC~R~L~TGdEF 136 (383)
T KOG4577|consen 91 FGTKCSACQEGIPPTQVVRKA--QDFVYHLHCFA--------CFICKRQLATGDEF 136 (383)
T ss_pred hCCcchhhcCCCChHHHHHHh--hcceeehhhhh--------hHhhhcccccCCee
Confidence 457899999998777777765 58999999974 77888777655544
No 165
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.87 E-value=11 Score=39.97 Aligned_cols=24 Identities=13% Similarity=-0.087 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH
Q 015232 44 DFSPPLIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 44 ~fs~~lI~iI~Ila~~Flvv~~~~ 67 (411)
.....++++++++++++|++++++
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~ 373 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVW 373 (439)
T ss_dssp ------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhh
Confidence 344455556555555554444433
No 166
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=34.72 E-value=1.2e+02 Score=28.80 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.7
Q ss_pred CCCChH
Q 015232 43 VDFSPP 48 (411)
Q Consensus 43 ~~fs~~ 48 (411)
+.|...
T Consensus 156 s~FD~~ 161 (186)
T PF05283_consen 156 STFDAA 161 (186)
T ss_pred CCCchh
Confidence 345543
No 167
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=16 Score=37.09 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=38.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
.....|-||...+.... ...+|.|.|+..|...|......||.|+..+
T Consensus 103 ~~~~~~~~~~g~l~vpt---~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT---RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEEecc---cccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 35678999988876652 2224999999999999999999999998754
No 168
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=34.66 E-value=26 Score=24.21 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=15.4
Q ss_pred cccccccccccCce-------EEEcCCCCceec
Q 015232 159 DCAVCLLEFEENDY-------VRTLPGCSHSFH 184 (411)
Q Consensus 159 ~C~ICle~f~~~~~-------~~~Lp~C~H~FH 184 (411)
+|+=|.-.|..++. ...-+.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778777765442 123335777764
No 169
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=34.50 E-value=33 Score=35.28 Aligned_cols=46 Identities=30% Similarity=0.541 Sum_probs=33.0
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCR 202 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR 202 (411)
....|-.|.++.......+-- .|.|+||.+|-.---..-..||-|-
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcC
Confidence 445599998887665544433 4999999999655445555799995
No 170
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.69 E-value=28 Score=35.72 Aligned_cols=49 Identities=20% Similarity=0.521 Sum_probs=36.4
Q ss_pred CCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 157 ARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
...|+||-+.....+ ...-.+ |+|..|..|+..-...+..||.||.+..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCccc
Confidence 378999999874443 333344 8888888888887788889999996543
No 171
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=33.20 E-value=63 Score=23.42 Aligned_cols=6 Identities=33% Similarity=1.531 Sum_probs=2.7
Q ss_pred HHHHHH
Q 015232 81 FRRWKR 86 (411)
Q Consensus 81 ~rr~rr 86 (411)
+|+|.-
T Consensus 30 YRKw~a 35 (43)
T PF08114_consen 30 YRKWQA 35 (43)
T ss_pred HHHHHH
Confidence 445443
No 172
>PF15050 SCIMP: SCIMP protein
Probab=33.04 E-value=52 Score=29.19 Aligned_cols=7 Identities=29% Similarity=0.164 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 015232 48 PLIAMVV 54 (411)
Q Consensus 48 ~lI~iI~ 54 (411)
++|+-++
T Consensus 9 WiiLAVa 15 (133)
T PF15050_consen 9 WIILAVA 15 (133)
T ss_pred HHHHHHH
Confidence 4443333
No 173
>PLN02195 cellulose synthase A
Probab=32.91 E-value=43 Score=39.08 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=36.3
Q ss_pred CCCccccccccccc---CceEEEcCCCCceechhHHHH-HHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEE---NDYVRTLPGCSHSFHVDCIDI-WLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~---~~~~~~Lp~C~H~FH~~CI~~-Wl~~~~tCPlCR~~i~ 206 (411)
....|.||=|++.. ++.-+....|+--.|..|.+- =-..++.||-|++..-
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 45689999997754 444444445888899999952 2256778999998765
No 174
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=31.93 E-value=24 Score=38.78 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=24.9
Q ss_pred cCCCcccccccccccC------c----eEEEcCCCCceechhHHHHH
Q 015232 155 REARDCAVCLLEFEEN------D----YVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~------~----~~~~Lp~C~H~FH~~CI~~W 191 (411)
+....|+||.|.|+.- + ..+.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 4567899999999751 0 122332 5889999998764
No 175
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=31.02 E-value=74 Score=21.89 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015232 49 LIAMVVVVATAFLVVTYSRL 68 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~l 68 (411)
+.+.+++++++|+++...++
T Consensus 10 ~y~y~Ip~v~lflL~~~~i~ 29 (33)
T TIGR03068 10 AYIYAIPVASLALLIAITLF 29 (33)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 33344444446666555554
No 176
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.74 E-value=31 Score=25.26 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=24.2
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHH
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL 192 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl 192 (411)
..|.+|-..|.....-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46889988876643223333599999998887654
No 177
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=30.61 E-value=36 Score=35.30 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 37 NNTKPPVDFSPPLIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 37 ~~~~~~~~fs~~lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
-+.-+.-.||+++|+|++|.+++=++++++.-+.-|+
T Consensus 307 ~G~PP~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~ 343 (350)
T PF15065_consen 307 YGSPPVDSFSPLVIMIMAVGLGVPLLLLILGGLYVCL 343 (350)
T ss_pred cCCCCccchhHHHHHHHHHHhhHHHHHHHHhhheEEE
Confidence 3344445599988888777777666655555444444
No 178
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=30.45 E-value=38 Score=34.72 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=32.8
Q ss_pred cCCCccccccccccc---------------Cc-eEEEcCCCCceechhHHHHHHhc---------CCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEE---------------ND-YVRTLPGCSHSFHVDCIDIWLRS---------HANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~---------------~~-~~~~Lp~C~H~FH~~CI~~Wl~~---------~~tCPlCR~~i~ 206 (411)
..+.+|++|+..=.- +- .-...| |||+--..-..-|-+. +..||.|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 346789999875211 00 011234 9999888888889653 345999977653
No 179
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=30.18 E-value=1.4e+02 Score=24.36 Aligned_cols=6 Identities=50% Similarity=0.689 Sum_probs=2.7
Q ss_pred HHHHhc
Q 015232 68 LISRHL 73 (411)
Q Consensus 68 lI~r~~ 73 (411)
+|+||+
T Consensus 44 liVRCf 49 (81)
T PF11057_consen 44 LIVRCF 49 (81)
T ss_pred HHHHHH
Confidence 344554
No 180
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.08 E-value=33 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=12.7
Q ss_pred CCceechhHHHHHHhcCCCCCccCcC
Q 015232 179 CSHSFHVDCIDIWLRSHANCPLCRAG 204 (411)
Q Consensus 179 C~H~FH~~CI~~Wl~~~~tCPlCR~~ 204 (411)
|||++-..- ....||+|...
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 777765432 44479999653
No 181
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=29.63 E-value=1.2e+02 Score=26.93 Aligned_cols=6 Identities=17% Similarity=0.944 Sum_probs=2.3
Q ss_pred HHHHHH
Q 015232 81 FRRWKR 86 (411)
Q Consensus 81 ~rr~rr 86 (411)
.+++++
T Consensus 143 ~~~~r~ 148 (154)
T PF09835_consen 143 VRKYRK 148 (154)
T ss_pred HHHHHH
Confidence 333333
No 182
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.93 E-value=62 Score=24.95 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=32.4
Q ss_pred CcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 158 RDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 158 ~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
..|-.|-.++.... ...+-. =...||.+|.+.-| +..||.|-..+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICS-fECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICS-FECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEe-EeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 35777877776655 344422 33689999999976 568999987664
No 184
>PF15102 TMEM154: TMEM154 protein family
Probab=26.83 E-value=31 Score=31.51 Aligned_cols=8 Identities=25% Similarity=0.933 Sum_probs=4.5
Q ss_pred hHHHHHHh
Q 015232 186 DCIDIWLR 193 (411)
Q Consensus 186 ~CI~~Wl~ 193 (411)
.=|++|+.
T Consensus 128 eeldkwm~ 135 (146)
T PF15102_consen 128 EELDKWMN 135 (146)
T ss_pred HHHHhHHH
Confidence 34666764
No 185
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=26.76 E-value=48 Score=32.17 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 015232 49 LIAMVVVVATAFL 61 (411)
Q Consensus 49 lI~iI~Ila~~Fl 61 (411)
+|++|+-+++++|
T Consensus 40 ~iaiVAG~~tVIL 52 (221)
T PF08374_consen 40 MIAIVAGIMTVIL 52 (221)
T ss_pred eeeeecchhhhHH
Confidence 3434433333333
No 186
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=26.46 E-value=24 Score=31.49 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=2.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 015232 45 FSPPLIAMVVVVATAFLVVTYS 66 (411)
Q Consensus 45 fs~~lI~iI~Ila~~Flvv~~~ 66 (411)
|.-++++..+++++++++.++.
T Consensus 75 ~~l~~pi~~sal~v~lVl~lls 96 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLS 96 (129)
T ss_dssp SSSS------------------
T ss_pred cceehhhhhhHHHHHHHHHHHH
Confidence 5555666666666665554443
No 187
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=26.43 E-value=39 Score=36.31 Aligned_cols=49 Identities=18% Similarity=0.463 Sum_probs=32.6
Q ss_pred CCCccccccccc-ccCceEEEcCCCCceechhHHHHHHh----cC----CCCCccCcC
Q 015232 156 EARDCAVCLLEF-EENDYVRTLPGCSHSFHVDCIDIWLR----SH----ANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f-~~~~~~~~Lp~C~H~FH~~CI~~Wl~----~~----~tCPlCR~~ 204 (411)
.+..|++|..-. -..+.+.....|+-.||..|.+.... .. --|-+|...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 345599999543 33445666667999999999887632 11 139999653
No 188
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=26.42 E-value=1e+02 Score=21.01 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=12.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHH
Q 015232 45 FSPPLIAMVVVVATAFLVVTYS 66 (411)
Q Consensus 45 fs~~lI~iI~Ila~~Flvv~~~ 66 (411)
+.+..+++.+.+-++|++++|.
T Consensus 6 l~fiAtaLfi~iPt~FLiilyv 27 (31)
T PF05151_consen 6 LAFIATALFILIPTAFLIILYV 27 (31)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhheEe
Confidence 3344455666666666665543
No 189
>PHA03291 envelope glycoprotein I; Provisional
Probab=26.41 E-value=1e+02 Score=32.12 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 015232 45 FSPPLIAMVVVVATAFLVVT 64 (411)
Q Consensus 45 fs~~lI~iI~Ila~~Flvv~ 64 (411)
++..-|+-|+|-+.+++.|.
T Consensus 283 Lt~~qiiQiAIPasii~cV~ 302 (401)
T PHA03291 283 LTVTQIIQIAIPASIIACVF 302 (401)
T ss_pred hhhhhhheeccchHHHHHhh
Confidence 34444666666555544443
No 190
>PRK01844 hypothetical protein; Provisional
Probab=26.30 E-value=1.2e+02 Score=24.44 Aligned_cols=21 Identities=29% Similarity=-0.195 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 015232 47 PPLIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 47 ~~lI~iI~Ila~~Flvv~~~~ 67 (411)
.+++++|+|++.+..+++-+.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444444443333
No 191
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=26.09 E-value=22 Score=37.30 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=0.0
Q ss_pred ccCceEEEcCCCCceechhHHHHHHh------cCCCCCccCcC
Q 015232 168 EENDYVRTLPGCSHSFHVDCIDIWLR------SHANCPLCRAG 204 (411)
Q Consensus 168 ~~~~~~~~Lp~C~H~FH~~CI~~Wl~------~~~tCPlCR~~ 204 (411)
.+.+.-+.|. |||++.. ..|-. ...+||+||..
T Consensus 299 ~~~qP~VYl~-CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 299 DERQPWVYLN-CGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------------
T ss_pred cccCceeecc-ccceeee---cccccccccccccccCCCcccc
No 192
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.96 E-value=77 Score=32.94 Aligned_cols=20 Identities=5% Similarity=0.238 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015232 48 PLIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 48 ~lI~iI~Ila~~Flvv~~~~ 67 (411)
+++-+|+||++++++|++++
T Consensus 312 IiaSiIAIvvIVLIMvIIYL 331 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYL 331 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445556665555555444
No 193
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=25.80 E-value=38 Score=32.81 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 015232 47 PPLIAMVVVVATAFLVVTYSRL 68 (411)
Q Consensus 47 ~~lI~iI~Ila~~Flvv~~~~l 68 (411)
-.+.+||+||+++..||+++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred cceeeeeeeecchhhhHHHHHH
Confidence 3688888888888888766554
No 194
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.78 E-value=24 Score=26.18 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=16.4
Q ss_pred ceEEEcCCCCceechhHHHHHH
Q 015232 171 DYVRTLPGCSHSFHVDCIDIWL 192 (411)
Q Consensus 171 ~~~~~Lp~C~H~FH~~CI~~Wl 192 (411)
...+.-+.|+|.||..|...|-
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCeeECCCCCCeECCCCCCcCC
Confidence 3445554599999999998883
No 195
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=24.97 E-value=1.8e+02 Score=22.84 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 49 LIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
+.+++.-++++|++++++.++...+
T Consensus 5 l~i~i~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 5 LQIMIIGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544443
No 196
>PRK10927 essential cell division protein FtsN; Provisional
Probab=24.45 E-value=68 Score=32.81 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=16.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHH
Q 015232 41 PPVDFSPPLIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 41 ~~~~fs~~lI~iI~Ila~~Flvv~~~~ 67 (411)
....+++.|++|.++|+++|+-.+|++
T Consensus 28 ~~~~~~~~m~alAvavlv~fiGGLyFi 54 (319)
T PRK10927 28 NLPAVSPAMVAIAAAVLVTFIGGLYFI 54 (319)
T ss_pred CCCCcchHHHHHHHHHHHHHhhheEEE
Confidence 456777777766666666665544433
No 197
>PTZ00046 rifin; Provisional
Probab=24.34 E-value=84 Score=32.73 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015232 49 LIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~ 67 (411)
++-+|+||++++++|++++
T Consensus 318 iaSiiAIvVIVLIMvIIYL 336 (358)
T PTZ00046 318 IASIVAIVVIVLIMVIIYL 336 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 198
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=24.18 E-value=1.6e+02 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 015232 54 VVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 54 ~Ila~~Flvv~~~~lI~r~~ 73 (411)
+..+..|++|++..++.-||
T Consensus 60 g~sllsli~VtvaalYsSC~ 79 (235)
T PF11359_consen 60 GFSLLSLIVVTVAALYSSCC 79 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655555554
No 199
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=24.02 E-value=44 Score=39.42 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015232 46 SPPLIAMVVVVATAFLVVTYSRLISRH 72 (411)
Q Consensus 46 s~~lI~iI~Ila~~Flvv~~~~lI~r~ 72 (411)
-|++|+|++||++++|+.+++.++.||
T Consensus 976 vp~wiIi~svl~GLLlL~llv~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALLVLLLWKC 1002 (1030)
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHhc
Confidence 455677888888888888777776665
No 200
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=23.91 E-value=43 Score=33.25 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCC--CCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHAN--CPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~t--CPlCR~ 203 (411)
-...|+|=...+..+ ++-.+|||+|-.+-|...+....+ ||+=-.
T Consensus 175 fs~rdPis~~~I~nP---viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNP---VISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred hcccCchhhhhhhch---hhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 346788887776665 333359999999999999866444 776433
No 201
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=23.82 E-value=29 Score=29.40 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=18.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHH
Q 015232 41 PPVDFSPPLIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 41 ~~~~fs~~lI~iI~Ila~~Flvv~~~~ 67 (411)
........+|++|++++++.++.+++-
T Consensus 57 ~~~~~~iili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 57 KQNNGNIILISLLSFVCILVILYAIYY 83 (101)
T ss_pred ccccccchHHHHHHHHHHHHHHhhheE
Confidence 556677777777777777666666554
No 202
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.66 E-value=59 Score=31.51 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015232 48 PLIAMVVVVATAFLVVTYSR 67 (411)
Q Consensus 48 ~lI~iI~Ila~~Flvv~~~~ 67 (411)
+|-++|+|++++++++++.+
T Consensus 15 iLNiaI~IV~lLIiiva~~l 34 (217)
T PF07423_consen 15 ILNIAIGIVSLLIIIVAYQL 34 (217)
T ss_pred hHHHHHHHHHHHHHHHhhhh
Confidence 34444444443333333333
No 203
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=23.28 E-value=2e+02 Score=27.31 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=11.6
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 015232 43 VDFSPPLIAMVVVVATAFLV 62 (411)
Q Consensus 43 ~~fs~~lI~iI~Ila~~Flv 62 (411)
..|--.||+.+++++++|++
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~ 180 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFL 180 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 34444566666666666555
No 204
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=22.82 E-value=97 Score=25.76 Aligned_cols=14 Identities=29% Similarity=0.197 Sum_probs=5.9
Q ss_pred CCCCCCCCCChHHH
Q 015232 37 NNTKPPVDFSPPLI 50 (411)
Q Consensus 37 ~~~~~~~~fs~~lI 50 (411)
-....+.-+-.++|
T Consensus 19 ~~~l~pn~lMtILi 32 (85)
T PF10717_consen 19 LNGLNPNTLMTILI 32 (85)
T ss_pred ccccChhHHHHHHH
Confidence 33444444444333
No 205
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=59 Score=36.52 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=30.5
Q ss_pred cccccccccccCceEEEcCCCCc-eechhHHHHHH--hc----CCCCCccCcCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSH-SFHVDCIDIWL--RS----HANCPLCRAGI 205 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H-~FH~~CI~~Wl--~~----~~tCPlCR~~i 205 (411)
.|+||-....- . ....||| ..+..|..... .. ...||+|+..+
T Consensus 2 ~c~ic~~s~~~---~-~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDF---V-GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccc---c-ccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 59999776533 3 3445999 89999988764 33 44589999854
No 206
>PHA02849 putative transmembrane protein; Provisional
Probab=22.55 E-value=2e+02 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=9.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHH
Q 015232 41 PPVDFSPPLIAMVVVVATAFLV 62 (411)
Q Consensus 41 ~~~~fs~~lI~iI~Ila~~Flv 62 (411)
...+....+++++-++.++|++
T Consensus 10 ~~f~~g~v~vi~v~v~vI~i~~ 31 (82)
T PHA02849 10 IEFDAGAVTVILVFVLVISFLA 31 (82)
T ss_pred cccccchHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 207
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=22.49 E-value=1.1e+02 Score=19.95 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=5.3
Q ss_pred CCChHHHHHHHHH
Q 015232 44 DFSPPLIAMVVVV 56 (411)
Q Consensus 44 ~fs~~lI~iI~Il 56 (411)
.|+...+.+++++
T Consensus 3 EF~~i~l~I~all 15 (26)
T TIGR03024 3 EFSTIALPIIALL 15 (26)
T ss_pred CCcchHHHHHHHH
Confidence 4554333333333
No 208
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=22.20 E-value=1.4e+02 Score=29.46 Aligned_cols=10 Identities=0% Similarity=0.089 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 015232 37 NNTKPPVDFS 46 (411)
Q Consensus 37 ~~~~~~~~fs 46 (411)
..++......
T Consensus 192 ~~~~~~~~~g 201 (268)
T PF09451_consen 192 KKGDSSGGWG 201 (268)
T ss_pred CCCCcccccc
Confidence 3334444444
No 209
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.96 E-value=73 Score=20.71 Aligned_cols=29 Identities=17% Similarity=0.583 Sum_probs=10.3
Q ss_pred cccccccccccCceEEEcCCCCceechhHH
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCI 188 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI 188 (411)
.|.+|.+.... +..-.-..|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 48888887655 333444459999999885
No 210
>PF15050 SCIMP: SCIMP protein
Probab=21.49 E-value=1.4e+02 Score=26.53 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 015232 54 VVVATAFLVVTY 65 (411)
Q Consensus 54 ~Ila~~Flvv~~ 65 (411)
+||++++++|..
T Consensus 10 iiLAVaII~vS~ 21 (133)
T PF15050_consen 10 IILAVAIILVSV 21 (133)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 211
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=21.03 E-value=56 Score=26.03 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=8.6
Q ss_pred eechhHHHHHHh
Q 015232 182 SFHVDCIDIWLR 193 (411)
Q Consensus 182 ~FH~~CI~~Wl~ 193 (411)
-||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 389999999985
No 212
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=20.88 E-value=1.7e+02 Score=23.88 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 50 IAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 50 I~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
.+++.-.+++|+++++++++.+..
T Consensus 9 ~l~v~GM~~VF~fL~lLi~~i~~~ 32 (82)
T TIGR01195 9 TLTVLGMGIVFLFLSLLIYAVRGM 32 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544
No 213
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=20.63 E-value=25 Score=38.07 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHhc
Q 015232 65 YSRLISRHL 73 (411)
Q Consensus 65 ~~~lI~r~~ 73 (411)
+++++.+||
T Consensus 467 lli~l~~cc 475 (501)
T PF00974_consen 467 LLILLIRCC 475 (501)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 333445555
No 214
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.57 E-value=55 Score=37.15 Aligned_cols=47 Identities=28% Similarity=0.526 Sum_probs=29.0
Q ss_pred cCCCccccccccccc----C----c-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEE----N----D-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~----~----~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
..+..|+-|...|-. + + ..-+.+.|.|--|..-|. ....||+|+..+
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 345677777777632 1 1 222344588888865553 346799998765
No 215
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.28 E-value=1.4e+02 Score=27.46 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=4.9
Q ss_pred CCCCChHHHH
Q 015232 42 PVDFSPPLIA 51 (411)
Q Consensus 42 ~~~fs~~lI~ 51 (411)
++-|+..+++
T Consensus 24 psffsthm~t 33 (189)
T PF05568_consen 24 PSFFSTHMYT 33 (189)
T ss_pred ccHHHHHHHH
Confidence 3445555543
No 216
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.27 E-value=71 Score=25.31 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 015232 43 VDFSPPLIAMVVVVATAFLV 62 (411)
Q Consensus 43 ~~fs~~lI~iI~Ila~~Flv 62 (411)
-+|+|-+|++|+|...++++
T Consensus 8 KGlnPGlIVLlvV~g~ll~f 27 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVF 27 (69)
T ss_pred cCCCCCeEEeehHHHHHHHH
Confidence 56888877776665554444
No 217
>PRK11827 hypothetical protein; Provisional
Probab=20.02 E-value=39 Score=26.30 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=14.0
Q ss_pred HHHHhcCCCCCccCcCccCC
Q 015232 189 DIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 189 ~~Wl~~~~tCPlCR~~i~~~ 208 (411)
+.||..--.||+|+.++...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 45666666799998887543
Done!