Query 015232
Match_columns 411
No_of_seqs 315 out of 1642
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 4.9E-16 1.7E-20 126.8 8.1 77 125-206 12-88 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.5E-15 5.2E-20 118.9 4.3 68 134-207 5-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.9E-14 6.6E-19 105.6 4.2 52 155-206 3-54 (55)
4 2ect_A Ring finger protein 126 99.5 3.9E-14 1.3E-18 111.3 5.5 55 155-210 13-67 (78)
5 2ep4_A Ring finger protein 24; 99.5 6.1E-14 2.1E-18 109.1 5.7 52 155-207 13-64 (74)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.3E-13 4.4E-18 105.9 5.9 52 155-207 12-63 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 2E-13 7E-18 109.1 4.0 52 156-207 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.3 9.5E-13 3.3E-17 96.4 4.2 50 155-205 3-53 (55)
9 1v87_A Deltex protein 2; ring- 99.3 1.4E-12 4.9E-17 109.5 5.4 51 156-207 24-94 (114)
10 2ea6_A Ring finger protein 4; 99.3 1.1E-12 3.7E-17 99.9 4.2 51 155-206 13-67 (69)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.8E-17 100.7 4.2 53 155-208 8-64 (71)
12 2xeu_A Ring finger protein 4; 99.3 1.8E-12 6.3E-17 97.2 3.7 52 156-208 2-57 (64)
13 3dpl_R Ring-box protein 1; ubi 99.3 1.7E-12 5.7E-17 109.6 3.6 51 155-206 35-100 (106)
14 2ct2_A Tripartite motif protei 99.2 1E-11 3.6E-16 99.0 6.4 53 155-208 13-69 (88)
15 2ecn_A Ring finger protein 141 99.2 3E-12 1E-16 98.5 2.5 50 155-209 13-62 (70)
16 2djb_A Polycomb group ring fin 99.2 1.1E-11 3.6E-16 96.3 5.3 50 155-208 13-63 (72)
17 1chc_A Equine herpes virus-1 r 99.2 8.1E-12 2.8E-16 95.3 4.4 49 155-206 3-51 (68)
18 2d8s_A Cellular modulator of i 99.2 8.1E-12 2.8E-16 100.3 4.5 52 155-208 13-71 (80)
19 2d8t_A Dactylidin, ring finger 99.2 5.7E-12 2E-16 97.5 3.2 49 155-207 13-61 (71)
20 2yur_A Retinoblastoma-binding 99.1 3E-11 1E-15 94.4 5.2 51 155-208 13-65 (74)
21 2csy_A Zinc finger protein 183 99.1 2.3E-11 7.9E-16 96.3 4.3 48 155-206 13-60 (81)
22 2ysl_A Tripartite motif-contai 99.1 3.1E-11 1E-15 93.2 4.8 50 155-208 18-70 (73)
23 2ecy_A TNF receptor-associated 99.1 2.8E-11 9.4E-16 92.2 4.1 50 155-208 13-63 (66)
24 4ayc_A E3 ubiquitin-protein li 99.1 1.7E-11 5.7E-16 107.0 2.8 49 155-207 51-99 (138)
25 4a0k_B E3 ubiquitin-protein li 99.1 9E-12 3.1E-16 107.0 0.2 51 155-206 46-111 (117)
26 1t1h_A Gspef-atpub14, armadill 99.1 1E-10 3.4E-15 91.7 4.5 50 155-208 6-56 (78)
27 3lrq_A E3 ubiquitin-protein li 99.0 5.5E-11 1.9E-15 98.3 2.8 51 154-208 19-71 (100)
28 2ecw_A Tripartite motif-contai 99.0 1.2E-10 4.2E-15 91.7 4.6 49 155-207 17-71 (85)
29 2ysj_A Tripartite motif-contai 99.0 1.5E-10 5.2E-15 87.1 4.8 43 155-201 18-63 (63)
30 4ap4_A E3 ubiquitin ligase RNF 99.0 9.6E-11 3.3E-15 99.5 4.0 52 155-207 5-60 (133)
31 2ecv_A Tripartite motif-contai 99.0 1.3E-10 4.4E-15 91.5 4.3 50 155-208 17-72 (85)
32 2ct0_A Non-SMC element 1 homol 99.0 1.7E-10 5.8E-15 91.4 4.8 51 155-208 13-65 (74)
33 2y43_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 95.8 3.6 49 155-207 20-69 (99)
34 2egp_A Tripartite motif-contai 99.0 4.5E-11 1.5E-15 93.5 1.0 49 155-207 10-65 (79)
35 2ckl_A Polycomb group ring fin 99.0 1.6E-10 5.5E-15 96.3 4.2 52 153-207 11-62 (108)
36 2ecj_A Tripartite motif-contai 99.0 1.5E-10 5.3E-15 85.2 3.4 43 155-201 13-58 (58)
37 1g25_A CDK-activating kinase a 99.0 2.4E-10 8.3E-15 86.7 4.6 52 156-208 2-56 (65)
38 3fl2_A E3 ubiquitin-protein li 99.0 2.5E-10 8.6E-15 97.4 4.3 49 155-207 50-99 (124)
39 2ckl_B Ubiquitin ligase protei 99.0 3.3E-10 1.1E-14 101.3 5.1 77 128-207 23-102 (165)
40 3ztg_A E3 ubiquitin-protein li 99.0 3.9E-10 1.3E-14 91.0 4.8 49 155-206 11-61 (92)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 3.1E-10 1.1E-14 96.3 3.8 53 155-208 70-126 (133)
42 1jm7_A BRCA1, breast cancer ty 98.9 3.9E-10 1.3E-14 93.8 3.2 50 155-208 19-71 (112)
43 1z6u_A NP95-like ring finger p 98.9 8.6E-10 2.9E-14 98.0 4.3 50 155-208 76-126 (150)
44 1rmd_A RAG1; V(D)J recombinati 98.8 1.2E-09 4.2E-14 92.0 2.7 50 155-208 21-71 (116)
45 3hct_A TNF receptor-associated 98.8 1.1E-09 3.7E-14 92.9 2.2 50 155-208 16-66 (118)
46 2kr4_A Ubiquitin conjugation f 98.8 2.4E-09 8.2E-14 86.3 4.2 49 155-207 12-60 (85)
47 3l11_A E3 ubiquitin-protein li 98.8 9.9E-10 3.4E-14 92.4 1.3 49 155-207 13-62 (115)
48 2vje_A E3 ubiquitin-protein li 98.8 2.9E-09 9.8E-14 81.4 3.4 48 155-206 6-56 (64)
49 1wgm_A Ubiquitin conjugation f 98.8 4.3E-09 1.5E-13 87.2 4.5 50 155-208 20-70 (98)
50 2kre_A Ubiquitin conjugation f 98.8 3.7E-09 1.3E-13 87.9 3.8 50 155-208 27-76 (100)
51 3knv_A TNF receptor-associated 98.7 3.1E-09 1.1E-13 93.5 2.9 49 155-207 29-78 (141)
52 1e4u_A Transcriptional repress 98.7 5E-09 1.7E-13 83.4 3.6 53 155-208 9-63 (78)
53 2y1n_A E3 ubiquitin-protein li 98.7 5.3E-09 1.8E-13 106.2 4.5 48 156-207 331-379 (389)
54 2vje_B MDM4 protein; proto-onc 98.7 6.5E-09 2.2E-13 79.1 3.2 50 155-206 5-55 (63)
55 1jm7_B BARD1, BRCA1-associated 98.7 3.7E-09 1.3E-13 89.5 1.6 48 155-208 20-68 (117)
56 1bor_A Transcription factor PM 98.7 4.9E-09 1.7E-13 77.7 1.5 47 155-208 4-50 (56)
57 4ic3_A E3 ubiquitin-protein li 98.6 6.1E-09 2.1E-13 81.5 0.8 44 155-206 22-66 (74)
58 2c2l_A CHIP, carboxy terminus 98.6 2.9E-08 9.9E-13 94.1 3.9 49 155-207 206-255 (281)
59 2yu4_A E3 SUMO-protein ligase 98.5 2.7E-08 9.2E-13 81.4 2.8 47 155-204 5-59 (94)
60 3k1l_B Fancl; UBC, ring, RWD, 98.5 1.9E-08 6.5E-13 100.4 0.9 52 155-206 306-372 (381)
61 3hcs_A TNF receptor-associated 98.5 4.5E-08 1.5E-12 87.7 2.2 50 155-208 16-66 (170)
62 2ea5_A Cell growth regulator w 98.4 1.4E-07 4.7E-12 73.0 3.8 45 155-207 13-58 (68)
63 2ecg_A Baculoviral IAP repeat- 98.4 4.4E-08 1.5E-12 76.6 0.9 45 155-207 23-68 (75)
64 1wim_A KIAA0161 protein; ring 98.4 1.8E-07 6.3E-12 75.9 4.0 48 156-204 4-61 (94)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.7E-07 5.7E-12 71.1 3.4 48 155-206 4-58 (60)
66 2f42_A STIP1 homology and U-bo 98.4 6.6E-08 2.3E-12 88.6 1.4 49 155-207 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.3 8.9E-08 3E-12 76.1 0.1 45 155-207 16-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.2 4.9E-07 1.7E-11 68.6 2.4 48 157-208 3-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 4E-07 1.4E-11 91.2 1.2 45 154-206 292-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 1E-06 3.5E-11 85.1 2.9 51 155-208 179-233 (267)
71 3vk6_A E3 ubiquitin-protein li 97.7 2E-05 6.9E-10 65.5 3.9 46 159-207 3-49 (101)
72 3nw0_A Non-structural maintena 97.6 4.2E-05 1.4E-09 72.8 5.4 50 156-208 179-230 (238)
73 2lri_C Autoimmune regulator; Z 92.0 0.078 2.7E-06 40.5 2.4 46 155-204 10-59 (66)
74 2jun_A Midline-1; B-BOX, TRIM, 91.1 0.16 5.4E-06 40.9 3.6 34 157-191 3-36 (101)
75 2ko5_A Ring finger protein Z; 90.1 0.11 3.8E-06 42.6 1.8 49 155-208 26-74 (99)
76 1we9_A PHD finger family prote 86.8 0.15 5.2E-06 38.1 0.5 49 155-203 4-57 (64)
77 3lqh_A Histone-lysine N-methyl 85.0 0.37 1.3E-05 43.9 2.2 49 157-205 2-64 (183)
78 2l5u_A Chromodomain-helicase-D 84.0 0.52 1.8E-05 35.1 2.2 45 155-203 9-57 (61)
79 3u5n_A E3 ubiquitin-protein li 83.8 0.29 1E-05 44.9 1.0 46 155-204 5-54 (207)
80 3o36_A Transcription intermedi 81.2 0.37 1.3E-05 43.3 0.6 45 156-204 3-51 (184)
81 1mm2_A MI2-beta; PHD, zinc fin 77.9 0.43 1.5E-05 35.6 -0.1 47 155-205 7-57 (61)
82 2k16_A Transcription initiatio 77.2 0.72 2.5E-05 35.4 1.0 50 155-205 16-69 (75)
83 1wep_A PHF8; structural genomi 76.8 1.5 5.2E-05 34.1 2.8 48 156-204 11-63 (79)
84 1wil_A KIAA1045 protein; ring 75.8 1.6 5.6E-05 35.1 2.7 35 155-191 13-47 (89)
85 2vpb_A Hpygo1, pygopus homolog 74.6 2.3 7.9E-05 32.1 3.2 35 155-189 6-41 (65)
86 2kgg_A Histone demethylase jar 73.8 1.3 4.4E-05 31.8 1.6 44 159-202 4-52 (52)
87 1f62_A Transcription factor WS 73.4 1.5 5.3E-05 31.0 1.9 44 159-203 2-49 (51)
88 2yql_A PHD finger protein 21A; 72.7 0.4 1.4E-05 35.0 -1.5 44 155-202 7-54 (56)
89 2ri7_A Nucleosome-remodeling f 72.5 0.88 3E-05 40.2 0.5 49 155-204 6-59 (174)
90 3m62_A Ubiquitin conjugation f 70.7 2.5 8.5E-05 47.4 3.6 49 156-208 890-939 (968)
91 2puy_A PHD finger protein 21A; 70.3 0.47 1.6E-05 35.1 -1.6 47 155-205 3-53 (60)
92 3v43_A Histone acetyltransfera 69.1 1.3 4.5E-05 36.7 0.8 46 158-203 62-111 (112)
93 1weo_A Cellulose synthase, cat 68.7 5.3 0.00018 32.4 4.2 51 156-206 15-69 (93)
94 2knc_B Integrin beta-3; transm 68.7 12 0.0004 29.4 6.2 25 49-73 11-35 (79)
95 1xwh_A Autoimmune regulator; P 67.9 0.82 2.8E-05 34.5 -0.7 45 155-203 6-54 (66)
96 1fp0_A KAP-1 corepressor; PHD 67.8 2.2 7.6E-05 34.4 1.8 46 155-204 23-72 (88)
97 2xb1_A Pygopus homolog 2, B-ce 67.3 2.7 9.3E-05 34.6 2.3 48 157-204 3-61 (105)
98 2ysm_A Myeloid/lymphoid or mix 66.4 1.6 5.6E-05 35.8 0.8 47 155-202 5-55 (111)
99 2yt5_A Metal-response element- 65.4 3.2 0.00011 30.8 2.2 50 155-204 4-61 (66)
100 1wem_A Death associated transc 64.9 2.2 7.6E-05 32.7 1.3 45 157-203 16-69 (76)
101 3v43_A Histone acetyltransfera 64.9 8.2 0.00028 31.8 4.9 47 156-202 4-62 (112)
102 2lbm_A Transcriptional regulat 64.4 6.9 0.00023 34.2 4.4 45 155-203 61-116 (142)
103 4gne_A Histone-lysine N-methyl 63.9 4.3 0.00015 33.7 2.9 46 155-206 13-64 (107)
104 2knc_A Integrin alpha-IIB; tra 62.6 8.5 0.00029 28.3 3.9 26 47-72 11-36 (54)
105 2l43_A N-teminal domain from h 62.6 2.5 8.5E-05 33.8 1.2 50 155-204 23-75 (88)
106 2klu_A T-cell surface glycopro 62.4 5.3 0.00018 30.6 2.9 19 55-73 13-31 (70)
107 2l8s_A Integrin alpha-1; trans 62.0 8.1 0.00028 28.4 3.7 25 48-72 9-33 (54)
108 2e6r_A Jumonji/ARID domain-con 61.8 1.1 3.7E-05 36.2 -1.1 49 155-204 14-66 (92)
109 2ro1_A Transcription intermedi 61.4 1.6 5.6E-05 39.5 -0.1 44 157-204 2-49 (189)
110 1wev_A Riken cDNA 1110020M19; 60.8 1.4 4.7E-05 35.3 -0.7 51 155-205 14-73 (88)
111 2kwj_A Zinc finger protein DPF 59.8 6.1 0.00021 32.7 3.2 45 158-202 2-59 (114)
112 2k1a_A Integrin alpha-IIB; sin 59.6 18 0.0006 25.2 4.9 26 47-72 9-34 (42)
113 3ql9_A Transcriptional regulat 58.8 11 0.00038 32.3 4.7 45 155-203 55-110 (129)
114 1wen_A Inhibitor of growth fam 58.4 4.8 0.00016 30.8 2.1 44 156-204 15-65 (71)
115 2lv9_A Histone-lysine N-methyl 57.5 3.5 0.00012 33.4 1.3 45 157-203 28-75 (98)
116 2e6s_A E3 ubiquitin-protein li 56.1 3.3 0.00011 32.3 0.9 45 158-203 27-76 (77)
117 2cs3_A Protein C14ORF4, MY039 56.0 8.9 0.0003 30.6 3.3 40 155-194 13-52 (93)
118 1weu_A Inhibitor of growth fam 54.9 4 0.00014 33.0 1.2 44 156-204 35-85 (91)
119 2ku3_A Bromodomain-containing 54.5 11 0.00036 28.9 3.5 49 155-203 14-65 (71)
120 3t7l_A Zinc finger FYVE domain 54.1 8.4 0.00029 30.6 3.0 38 155-192 18-55 (90)
121 3asl_A E3 ubiquitin-protein li 53.6 3.5 0.00012 31.4 0.6 44 159-203 20-68 (70)
122 2yw8_A RUN and FYVE domain-con 52.3 8.7 0.0003 29.9 2.7 37 155-191 17-53 (82)
123 3shb_A E3 ubiquitin-protein li 51.9 2.9 0.0001 32.7 -0.1 44 159-203 28-76 (77)
124 3o70_A PHD finger protein 13; 50.4 3.6 0.00012 31.2 0.2 47 155-203 17-66 (68)
125 1z2q_A LM5-1; membrane protein 50.2 11 0.00037 29.6 3.0 37 155-191 19-55 (84)
126 3i2d_A E3 SUMO-protein ligase 49.9 11 0.00037 37.9 3.7 55 158-215 250-308 (371)
127 1joc_A EEA1, early endosomal a 49.6 10 0.00035 32.0 3.0 37 155-191 67-103 (125)
128 2vok_A 52 kDa RO protein; poly 48.7 10 0.00035 34.2 3.0 47 248-294 12-62 (188)
129 1wfk_A Zinc finger, FYVE domai 48.0 11 0.00038 29.9 2.8 37 155-191 7-43 (88)
130 2vnf_A ING 4, P29ING4, inhibit 47.4 5.4 0.00019 29.4 0.8 43 156-203 9-58 (60)
131 2l4z_A DNA endonuclease RBBP8, 47.4 29 0.001 28.7 5.5 39 157-206 61-99 (123)
132 3c6w_A P28ING5, inhibitor of g 47.2 5.7 0.0002 29.3 0.9 43 156-203 8-57 (59)
133 4fo9_A E3 SUMO-protein ligase 46.2 15 0.00051 36.7 4.0 54 158-214 216-273 (360)
134 3ask_A E3 ubiquitin-protein li 45.8 5.7 0.0002 37.3 0.8 45 158-203 175-224 (226)
135 1vfy_A Phosphatidylinositol-3- 45.3 14 0.00048 28.0 2.9 33 158-190 12-44 (73)
136 1y02_A CARP2, FYVE-ring finger 44.9 3 0.0001 35.4 -1.1 49 156-204 18-66 (120)
137 3kb5_A Tripartite motif-contai 44.7 15 0.00051 33.1 3.4 50 246-295 13-67 (193)
138 2fbe_A Predicted: similar to R 44.6 13 0.00045 33.8 3.1 49 246-294 11-63 (201)
139 1x4k_A Skeletal muscle LIM-pro 44.4 17 0.00058 26.6 3.2 41 157-207 5-45 (72)
140 1dvp_A HRS, hepatocyte growth 44.4 10 0.00035 34.7 2.3 36 156-191 160-195 (220)
141 3zyq_A Hepatocyte growth facto 44.2 11 0.00037 34.9 2.5 35 157-191 164-198 (226)
142 1x4u_A Zinc finger, FYVE domai 43.9 13 0.00044 29.1 2.5 35 155-189 12-46 (84)
143 2wl1_A Pyrin, marenostrin; amy 43.9 13 0.00044 33.5 2.9 48 247-294 15-66 (191)
144 2k9j_B Integrin beta-3; transm 42.4 56 0.0019 22.6 5.3 25 49-73 10-34 (43)
145 2dj7_A Actin-binding LIM prote 41.8 15 0.00051 28.0 2.6 40 156-206 14-53 (80)
146 3f6q_B LIM and senescent cell 41.2 17 0.00057 26.3 2.7 42 156-207 10-51 (72)
147 1z60_A TFIIH basal transcripti 40.5 15 0.00051 27.3 2.2 43 158-201 16-58 (59)
148 2rsd_A E3 SUMO-protein ligase 40.0 3.3 0.00011 31.2 -1.5 44 158-203 11-64 (68)
149 1wee_A PHD finger family prote 39.8 11 0.00038 28.5 1.5 47 156-203 15-65 (72)
150 1wyh_A SLIM 2, skeletal muscle 39.4 17 0.00057 26.6 2.4 42 156-207 4-45 (72)
151 3mpx_A FYVE, rhogef and PH dom 38.1 6.7 0.00023 39.0 0.0 50 156-205 374-430 (434)
152 1zbd_B Rabphilin-3A; G protein 38.0 18 0.0006 31.1 2.7 49 155-203 53-106 (134)
153 2cu8_A Cysteine-rich protein 2 37.9 21 0.00072 26.5 2.8 40 156-206 8-47 (76)
154 1x63_A Skeletal muscle LIM-pro 37.8 25 0.00084 26.4 3.2 41 157-207 15-55 (82)
155 2g6q_A Inhibitor of growth pro 35.6 11 0.00039 27.9 0.9 45 156-203 10-59 (62)
156 2ysm_A Myeloid/lymphoid or mix 35.1 6.3 0.00022 32.2 -0.6 45 159-204 56-104 (111)
157 1g47_A Pinch protein; LIM doma 34.7 19 0.00067 26.6 2.2 42 156-207 10-51 (77)
158 1iml_A CRIP, cysteine rich int 33.8 21 0.00072 26.5 2.2 37 159-206 2-38 (76)
159 1x4l_A Skeletal muscle LIM-pro 33.5 21 0.00073 26.1 2.2 41 156-206 4-46 (72)
160 3kv4_A PHD finger protein 8; e 33.0 10 0.00036 38.9 0.4 48 157-204 4-56 (447)
161 1x61_A Thyroid receptor intera 32.7 22 0.00075 26.0 2.1 40 156-205 4-43 (72)
162 1x68_A FHL5 protein; four-and- 31.6 28 0.00095 25.9 2.6 41 156-206 4-46 (76)
163 2kwj_A Zinc finger protein DPF 30.2 4.9 0.00017 33.3 -2.1 46 159-205 60-109 (114)
164 1wew_A DNA-binding family prot 28.9 39 0.0013 25.9 3.0 47 156-204 15-72 (78)
165 3a1b_A DNA (cytosine-5)-methyl 28.7 44 0.0015 29.6 3.7 45 155-203 77-133 (159)
166 1pi7_A VPU protein, U ORF prot 28.3 96 0.0033 20.8 4.4 17 51-67 7-23 (36)
167 1a7i_A QCRP2 (LIM1); LIM domai 27.7 24 0.00081 26.5 1.6 41 156-207 6-46 (81)
168 3o7a_A PHD finger protein 13 v 27.7 12 0.00042 26.4 -0.1 41 162-203 8-51 (52)
169 3kqi_A GRC5, PHD finger protei 27.5 43 0.0015 25.4 3.0 49 156-204 8-61 (75)
170 2co8_A NEDD9 interacting prote 27.3 27 0.00094 26.5 1.9 41 156-207 14-54 (82)
171 3kv5_D JMJC domain-containing 26.9 14 0.00048 38.3 0.2 45 159-203 38-87 (488)
172 2zet_C Melanophilin; complex, 26.4 36 0.0012 29.8 2.7 47 156-203 67-116 (153)
173 2d8y_A Eplin protein; LIM doma 26.1 39 0.0013 26.0 2.6 41 156-207 14-54 (91)
174 2l3k_A Rhombotin-2, linker, LI 25.6 21 0.00071 29.4 0.9 28 159-188 10-37 (123)
175 1zfo_A LAsp-1; LIM domain, zin 25.0 24 0.00083 22.4 1.0 28 158-188 4-31 (31)
176 2pv0_B DNA (cytosine-5)-methyl 24.4 40 0.0014 33.9 2.9 45 155-203 91-147 (386)
177 2rgt_A Fusion of LIM/homeobox 24.3 50 0.0017 28.4 3.3 40 157-206 65-104 (169)
178 2jmi_A Protein YNG1, ING1 homo 23.9 19 0.00065 28.9 0.4 46 155-203 24-75 (90)
179 2gmg_A Hypothetical protein PF 23.9 14 0.00048 30.7 -0.4 24 178-206 72-95 (105)
180 1x62_A C-terminal LIM domain p 22.5 44 0.0015 25.0 2.2 39 156-206 14-52 (79)
181 3arc_M Photosystem II reaction 21.8 91 0.0031 21.0 3.3 21 46-66 7-27 (36)
182 1x64_A Alpha-actinin-2 associa 21.6 57 0.002 24.9 2.8 40 156-207 24-63 (89)
183 2dar_A PDZ and LIM domain prot 21.1 53 0.0018 25.1 2.5 39 156-206 24-62 (90)
184 1rh5_C Secbeta; protein transl 20.9 1.3E+02 0.0044 21.8 4.3 26 39-64 22-47 (53)
185 1rut_X Flinc4, fusion protein 20.3 73 0.0025 27.9 3.5 38 159-206 71-108 (188)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=126.77 Aligned_cols=77 Identities=29% Similarity=0.662 Sum_probs=66.9
Q ss_pred cCCCCCCHHHHhcCCceeeccccccchhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcC
Q 015232 125 YSPYGLDDSVIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG 204 (411)
Q Consensus 125 ~~~~gls~~~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 204 (411)
....|++++.|+.||...+...... ...+..|+||+++|..++.+++++ |||.||..||+.|+..+.+||+||..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~----~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGA----VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSS----SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred cCCCCCCHHHHHhCCCeeecccccc----cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 4478999999999999888755432 246778999999999999999999 99999999999999999999999998
Q ss_pred cc
Q 015232 205 IF 206 (411)
Q Consensus 205 i~ 206 (411)
+.
T Consensus 87 ~~ 88 (91)
T 2l0b_A 87 FP 88 (91)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=118.90 Aligned_cols=68 Identities=37% Similarity=0.858 Sum_probs=56.9
Q ss_pred HHhcCCceeeccccccchhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 134 VIKTIPLSLFTAKNKTTSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 134 ~i~~Lp~~~~~~~~~~~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.++.||...+..... ..++..|+||+++|..++.++.++ |+|+||..||+.|+..+.+||+||..+..
T Consensus 5 ~i~~lp~~~~~~~~~-----~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH-----QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCSSCCCEEBCSSSC-----SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred hHhhCCcEEecCccc-----cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 356677777765432 146778999999999999999998 99999999999999999999999998754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.9e-14 Score=105.64 Aligned_cols=52 Identities=48% Similarity=1.177 Sum_probs=47.2
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+++.+|+||++++.+++.+..++.|||+||..||..|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4677899999999998888888779999999999999999999999998864
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=3.9e-14 Score=111.33 Aligned_cols=55 Identities=36% Similarity=0.884 Sum_probs=49.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTES 210 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~~ 210 (411)
....+|+||++.|..++.+++++ |+|+||..||..|+..+.+||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 56789999999999988888998 99999999999999999999999999865433
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.1e-14 Score=109.14 Aligned_cols=52 Identities=37% Similarity=0.848 Sum_probs=47.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
..+..|+||++.|..++.+++++ |+|+||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 56778999999999998899998 99999999999999988899999998854
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=105.89 Aligned_cols=52 Identities=42% Similarity=0.970 Sum_probs=47.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.....|+||++.|..++.++.++ |||+||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 56778999999999888889998 99999999999999998999999998754
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=109.06 Aligned_cols=52 Identities=33% Similarity=0.894 Sum_probs=41.8
Q ss_pred CCCccccccccccc-----------CceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEE-----------NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~-----------~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
+++.|+||++.|.+ ++.+++++.|+|+||..||++||..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45667777777754 45566665699999999999999999999999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.31 E-value=9.5e-13 Score=96.36 Aligned_cols=50 Identities=28% Similarity=0.734 Sum_probs=43.4
Q ss_pred cCCCcccccccccccCc-eEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEEND-YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~-~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
..+.+|+||++.+.+++ .+++++ |+|+||..||+.|+..+.+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 35678999999997644 567777 999999999999999889999999876
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1.4e-12 Score=109.47 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=41.4
Q ss_pred CCCcccccccccccCc---------------eEEEcCCCCceechhHHHHHH-----hcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEEND---------------YVRTLPGCSHSFHVDCIDIWL-----RSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~i~~ 207 (411)
.+++|+|||+.|..+. .+++++ |+|+||..||+.|+ ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999997643 344676 99999999999999 346689999998754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=99.95 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=44.1
Q ss_pred cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.+...|+||++.+.+. ..+.+++ |||+||..||+.|+..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 5678899999999864 3456777 9999999999999999999999999874
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.30 E-value=1.1e-12 Score=100.73 Aligned_cols=53 Identities=25% Similarity=0.611 Sum_probs=45.7
Q ss_pred cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
+++..|+||++.+.+. +.+++++ |||.||..||+.|+..+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4677899999999774 4567777 999999999999999999999999988654
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=97.24 Aligned_cols=52 Identities=25% Similarity=0.621 Sum_probs=44.3
Q ss_pred CCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 156 EARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
++.+|+||++.+.++ +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999999764 4556777 999999999999999999999999987543
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.27 E-value=1.7e-12 Score=109.58 Aligned_cols=51 Identities=29% Similarity=0.578 Sum_probs=43.3
Q ss_pred cCCCcccccccccccCc---------------eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEND---------------YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~---------------~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.+++.|+||++.|.... .++.++ |+|.||..||+.||..+.+||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 35788999999998641 356677 9999999999999999999999999853
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=98.97 Aligned_cols=53 Identities=30% Similarity=0.738 Sum_probs=45.2
Q ss_pred cCCCcccccccccccCce-EEEcCCCCceechhHHHHHHhcC---CCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDY-VRTLPGCSHSFHVDCIDIWLRSH---ANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~-~~~Lp~C~H~FH~~CI~~Wl~~~---~tCPlCR~~i~~~ 208 (411)
.+...|+||++.|.+.+. .++++ |||.||..||..|+..+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 567889999999988664 67787 99999999999999765 6899999987654
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3e-12 Score=98.47 Aligned_cols=50 Identities=36% Similarity=0.907 Sum_probs=43.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLTE 209 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~~ 209 (411)
.+...|+||++.+.+ ++++ |||.||..||..|+..+.+||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 467789999999876 6777 9999999999999999999999999886543
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=96.26 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=42.9
Q ss_pred cCCCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
++...|+||++.+.+. +++ + |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCc---CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4567899999999874 444 6 999999999999999889999999988654
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.21 E-value=8.1e-12 Score=95.34 Aligned_cols=49 Identities=35% Similarity=0.859 Sum_probs=42.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+.+..|+||++.+.++ ++.++ |||.||..||..|+..+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3567899999998653 46787 9999999999999998899999999874
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.1e-12 Score=100.26 Aligned_cols=52 Identities=25% Similarity=0.703 Sum_probs=43.7
Q ss_pred cCCCcccccccccccCceEEEcCCCC-----ceechhHHHHHHhcC--CCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCS-----HSFHVDCIDIWLRSH--ANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~-----H~FH~~CI~~Wl~~~--~tCPlCR~~i~~~ 208 (411)
.++..|.||++++.+++.+ ++| |+ |.||..||+.||..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4567899999999877766 588 96 999999999999765 4899999988654
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=97.50 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=42.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.++..|+||++.+.+. ++++ |||+||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999998664 6677 99999999999999988999999998753
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=94.38 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=42.2
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~i~~~ 208 (411)
.++..|+||++.|.++ ++++.|||.||..||..|+..+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4567899999999876 4565599999999999999765 6899999976543
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.3e-11 Score=96.29 Aligned_cols=48 Identities=21% Similarity=0.453 Sum_probs=42.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.....|+||++.+.++ ++++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999764 5677 9999999999999998889999999875
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.1e-11 Score=93.23 Aligned_cols=50 Identities=28% Similarity=0.664 Sum_probs=41.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh---cCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR---SHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~~i~~~ 208 (411)
.++..|+||++.+.+. ++++ |||.||..||..|+. .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4677899999998764 5667 999999999999996 455799999988544
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=92.22 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=41.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~~ 208 (411)
.+...|+||++.+.++ .+++ |||.||..||..|+ ..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4567899999999876 3466 99999999999999 4567899999987554
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.12 E-value=1.7e-11 Score=107.00 Aligned_cols=49 Identities=37% Similarity=0.838 Sum_probs=42.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
+++..|+||++.|.++ ++++ |||.||..||..|+..+.+||+||..+..
T Consensus 51 ~~~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4556899999999764 6777 99999999999999999999999998753
No 25
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.10 E-value=9e-12 Score=107.00 Aligned_cols=51 Identities=29% Similarity=0.617 Sum_probs=1.6
Q ss_pred cCCCcccccccccccC-------------c--eEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEEN-------------D--YVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~-------------~--~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
..++.|+||++.|.+. + .+..++ |+|.||..||+.||..+.+||+||.++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3567899999999762 2 223345 9999999999999999999999999854
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=1e-10 Score=91.71 Aligned_cols=50 Identities=18% Similarity=0.469 Sum_probs=42.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~ 208 (411)
.+...|+||++.|.++ ++++ |||.||..||..|+.. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4678899999999875 5567 9999999999999976 77899999987543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.04 E-value=5.5e-11 Score=98.29 Aligned_cols=51 Identities=33% Similarity=0.761 Sum_probs=42.9
Q ss_pred hcCCCcccccccccccCceEEE-cCCCCceechhHHHHHHhcC-CCCCccCcCccCC
Q 015232 154 LREARDCAVCLLEFEENDYVRT-LPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLT 208 (411)
Q Consensus 154 ~~~~~~C~ICle~f~~~~~~~~-Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~~ 208 (411)
..+...|+||++.|.++ +. ++ |||.||..||..|+..+ ..||+||..+...
T Consensus 19 l~~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 35678899999999764 45 76 99999999999999877 6899999988543
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.2e-10 Score=91.67 Aligned_cols=49 Identities=35% Similarity=0.761 Sum_probs=42.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc------CCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS------HANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~i~~ 207 (411)
.++..|+||++.+.++ .+++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4567899999999876 4677 9999999999999976 6689999998754
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=87.14 Aligned_cols=43 Identities=33% Similarity=0.756 Sum_probs=37.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh---cCCCCCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR---SHANCPLC 201 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~---~~~tCPlC 201 (411)
.++..|+||++.+.++ ++++ |||.||..||..|+. .+..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4678899999999875 5677 999999999999997 45679998
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=9.6e-11 Score=99.50 Aligned_cols=52 Identities=25% Similarity=0.622 Sum_probs=44.9
Q ss_pred cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.++..|+||++.|.++ +.+++++ |||.||..||+.|+..+.+||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3567899999999775 4557777 99999999999999999999999998754
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=91.53 Aligned_cols=50 Identities=28% Similarity=0.684 Sum_probs=42.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc------CCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS------HANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~------~~tCPlCR~~i~~~ 208 (411)
.+...|+||++.+.+. ++++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4567899999999775 4567 9999999999999976 77899999988643
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=1.7e-10 Score=91.43 Aligned_cols=51 Identities=18% Similarity=0.501 Sum_probs=42.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~i~~~ 208 (411)
+...+|+||.+.+..++... .|+|.||..||.+||+.+ .+||+||..+...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 45688999999998775443 499999999999999877 7899999887544
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=95.78 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=42.3
Q ss_pred cCCCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.+...|+||++.|.++ +++ + |||.||..||..|+..+..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCc---CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4567899999999774 444 6 99999999999999988899999998754
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.01 E-value=4.5e-11 Score=93.51 Aligned_cols=49 Identities=29% Similarity=0.686 Sum_probs=41.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-------CCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-------HANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-------~~tCPlCR~~i~~ 207 (411)
.++..|+||++.|.++ ++++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 5678899999999875 4577 9999999999999976 5679999998754
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.01 E-value=1.6e-10 Score=96.34 Aligned_cols=52 Identities=27% Similarity=0.592 Sum_probs=43.7
Q ss_pred hhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 153 ALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 153 ~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
...++..|+||++.+.++ +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 345678999999999764 33346 99999999999999988999999998754
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=85.21 Aligned_cols=43 Identities=33% Similarity=0.852 Sum_probs=36.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH---hcCCCCCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL---RSHANCPLC 201 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl---~~~~tCPlC 201 (411)
.+...|+||++.+.++ ++++ |||+||..||..|+ ..+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4677899999999876 5577 99999999999995 456789998
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=2.4e-10 Score=86.67 Aligned_cols=52 Identities=19% Similarity=0.572 Sum_probs=41.1
Q ss_pred CCCccccccc-ccccCceE-EEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232 156 EARDCAVCLL-EFEENDYV-RTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle-~f~~~~~~-~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~ 208 (411)
++..|+||++ .+.++... .+++ |||.||..||+.|+.. +..||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3567999999 78776543 4566 9999999999999754 46799999988543
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.98 E-value=2.5e-10 Score=97.42 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=41.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~ 207 (411)
.+...|+||++.|.++ ++++ |||.||..||..|+..+. .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567899999999865 5677 999999999999997544 89999998865
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=3.3e-10 Score=101.25 Aligned_cols=77 Identities=27% Similarity=0.533 Sum_probs=52.0
Q ss_pred CCCCHHHHhcCCceeecccccc--chhhhcCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcC
Q 015232 128 YGLDDSVIKTIPLSLFTAKNKT--TSKALREARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAG 204 (411)
Q Consensus 128 ~gls~~~i~~Lp~~~~~~~~~~--~~~~~~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~ 204 (411)
.+++...+...+.......... ..+...+...|+||++.|.++ +.+++ |||.||..||..|+.. +..||+||..
T Consensus 23 ~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 99 (165)
T 2ckl_B 23 WELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKK 99 (165)
T ss_dssp CCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCB
T ss_pred ccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCc
Confidence 4556666666554433322211 112224566899999999864 44446 9999999999999986 7789999998
Q ss_pred ccC
Q 015232 205 IFL 207 (411)
Q Consensus 205 i~~ 207 (411)
+..
T Consensus 100 ~~~ 102 (165)
T 2ckl_B 100 LVS 102 (165)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.97 E-value=3.9e-10 Score=91.02 Aligned_cols=49 Identities=22% Similarity=0.544 Sum_probs=41.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPlCR~~i~ 206 (411)
.++..|+||++.|.++ ++++.|||.||..||..|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5678899999999876 5665599999999999999643 58999999874
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=3.1e-10 Score=96.28 Aligned_cols=53 Identities=25% Similarity=0.611 Sum_probs=44.6
Q ss_pred cCCCcccccccccccC----ceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEEN----DYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~----~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
++...|+||++.+.+. ...+.++ |||+||..||+.|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999999763 3446676 999999999999999999999999988543
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=3.9e-10 Score=93.84 Aligned_cols=50 Identities=28% Similarity=0.631 Sum_probs=41.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC---CCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA---NCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~---tCPlCR~~i~~~ 208 (411)
.+...|+||++.+.++ ++++ |||.||..||..|+..+. .||+||..+...
T Consensus 19 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 19 QKILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHHTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred cCCCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4567899999999775 4567 999999999999997654 799999987643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=8.6e-10 Score=97.97 Aligned_cols=50 Identities=22% Similarity=0.498 Sum_probs=42.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~~ 208 (411)
.+...|+||++.|.++ ++++ |||.||..||..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4567899999999775 5577 999999999999998654 799999998654
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.2e-09 Score=91.96 Aligned_cols=50 Identities=28% Similarity=0.539 Sum_probs=42.2
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~~ 208 (411)
.++..|+||++.+.++ ++++ |||.||..||..|+.. ..+||+||..+...
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4567899999999765 5577 9999999999999976 67899999987653
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.81 E-value=1.1e-09 Score=92.89 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=42.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~~ 208 (411)
.+...|+||++.+.++ ++++ |||.||..||..|+.... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 4567899999999775 5677 999999999999997655 899999988653
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=2.4e-09 Score=86.26 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=43.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.+...|+||++.|+++ ++++ |||.|+..||..|+..+.+||+|+..+..
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4678999999999887 7787 99999999999999988899999998754
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.79 E-value=9.9e-10 Score=92.40 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=41.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~ 207 (411)
.++..|+||++.+.++ ++++ |||.||..||..|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3457899999999875 6677 9999999999999965 6689999998753
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.78 E-value=2.9e-09 Score=81.37 Aligned_cols=48 Identities=19% Similarity=0.436 Sum_probs=40.0
Q ss_pred cCCCcccccccccccCceEEEc--CCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTL--PGCSHS-FHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~L--p~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+++.+|.||++...+. ..+ | |||. |+..|+..|...+..||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3566899999987653 333 8 9999 899999999998889999999874
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.77 E-value=4.3e-09 Score=87.21 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=44.0
Q ss_pred cCCCcccccccccccCceEEEcCCCC-ceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCS-HSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
.++..|+||++.|+++ ++++ || |.|+..||..|+..+.+||+|+..+...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3578899999999887 6777 99 9999999999998888999999987643
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.76 E-value=3.7e-09 Score=87.94 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=44.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
.+...|+||++.|.++ ++++ |||.|+..||..|+..+.+||+|+..+...
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4678999999999887 6777 999999999999999888999999987543
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.74 E-value=3.1e-09 Score=93.49 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=41.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC-CCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA-NCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~-tCPlCR~~i~~ 207 (411)
++...|+||++.+.++ +.++ |||.||..||..|+.... .||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4677899999999876 5566 999999999999997654 79999998744
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=5e-09 Score=83.44 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=40.5
Q ss_pred cCCCcccccccccccCce-EEEcCCCCceechhHHHHHHh-cCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDY-VRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~-~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~~~ 208 (411)
+++..|+||++.+...+. +..++ |||.||..|+..|+. .+..||+||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 567789999999865432 22244 999999999998874 456799999988654
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.73 E-value=5.3e-09 Score=106.21 Aligned_cols=48 Identities=27% Similarity=0.707 Sum_probs=41.1
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHh-cCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-SHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-~~~tCPlCR~~i~~ 207 (411)
....|+||++.+.+ .+.++ |||.||..||..|+. .+.+||+||..+..
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34689999999865 46777 999999999999998 67889999998754
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.70 E-value=6.5e-09 Score=79.11 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=40.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+....|.||++...+. .+..+| |||+ |+..|+..|...+..||+||..|.
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4567899999986553 122237 9998 999999999988889999999873
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=3.7e-09 Score=89.49 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=41.1
Q ss_pred cCCCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
.+...|+||++.|.++ +++ + |||.||..||..|+. ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 5678899999999876 555 6 999999999999987 7899999987543
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=4.9e-09 Score=77.73 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=39.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
.+...|+||++.|.++ ++++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4567899999999876 6787 9999999999884 56799999987543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=6.1e-09 Score=81.52 Aligned_cols=44 Identities=25% Similarity=0.636 Sum_probs=37.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+++..|.||++.+.+ ...+| |||. ||..|+..| ..||+||..+.
T Consensus 22 ~~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 456789999998766 36777 9999 999999999 78999999874
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=2.9e-08 Score=94.12 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=41.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc-CCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-HANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~tCPlCR~~i~~ 207 (411)
.....|+||++.|.++ ++++ |||.||..||..|+.. +.+||+|+.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3567899999999887 6787 9999999999999975 4459999998854
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2.7e-08 Score=81.38 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=38.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC------CCCCc--cCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH------ANCPL--CRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~------~tCPl--CR~~ 204 (411)
.....|+||++.|.++ ++++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999886 5553499999999999999653 48999 9865
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.49 E-value=1.9e-08 Score=100.40 Aligned_cols=52 Identities=21% Similarity=0.606 Sum_probs=39.9
Q ss_pred cCCCcccccccccccCce----EEEcCCCCceechhHHHHHHhcC-----------CCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDY----VRTLPGCSHSFHVDCIDIWLRSH-----------ANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~----~~~Lp~C~H~FH~~CI~~Wl~~~-----------~tCPlCR~~i~ 206 (411)
+...+|+||++.+.++.. ....+.|+|.||..||.+||... .+||.||.+|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 567899999999987322 12223599999999999999642 35999999875
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.46 E-value=4.5e-08 Score=87.67 Aligned_cols=50 Identities=26% Similarity=0.635 Sum_probs=41.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-CCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~~ 208 (411)
.+...|+||++.+.++ ++++ |||.||..||..|+... .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 4567899999999876 5577 99999999999999654 4899999987553
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.4e-07 Score=72.97 Aligned_cols=45 Identities=29% Similarity=0.706 Sum_probs=37.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.+...|.||++...+ ++.+| |||+ ||..|+.. ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 457789999998765 47788 9999 99999984 4689999998754
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=4.4e-08 Score=76.63 Aligned_cols=45 Identities=24% Similarity=0.597 Sum_probs=36.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.++..|+||++.+.+. +.++ |||. ||..|+.. ...||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3456899999998664 5677 9999 99999964 3679999998743
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=1.8e-07 Score=75.95 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=39.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc--------CCCCCc--cCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS--------HANCPL--CRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~--------~~tCPl--CR~~ 204 (411)
+..+|+||++++..++.+...+ |||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999998876666666 9999999999998752 236999 9987
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.38 E-value=1.7e-07 Score=71.07 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=37.2
Q ss_pred cCCCcccccccccccCceEEEcCCCC--c---eechhHHHHHHhc--CCCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCS--H---SFHVDCIDIWLRS--HANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~--H---~FH~~CI~~Wl~~--~~tCPlCR~~i~ 206 (411)
++...|.||+++. ++.+ ++| |. | .||..||+.|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4677899999983 3334 577 65 4 9999999999953 678999998764
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.38 E-value=6.6e-08 Score=88.62 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=41.9
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC-CCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH-ANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~-~tCPlCR~~i~~ 207 (411)
.....|+||++.|.++ ++++ |||.|+..||..|+..+ .+||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4678999999999886 6777 99999999999999753 469999998754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=8.9e-08 Score=76.11 Aligned_cols=45 Identities=31% Similarity=0.622 Sum_probs=37.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
.++..|.||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 456789999998765 47788 9999 999999987 389999998754
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.20 E-value=4.9e-07 Score=68.59 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCcccccccccccCceEEEc-CCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 157 ARDCAVCLLEFEENDYVRTL-PGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~L-p~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
...|+||++.++++ +++ + |||+|...||++|+..+.+||+++.++...
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 35799999999876 555 5 999999999999998888899999887543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.15 E-value=4e-07 Score=91.19 Aligned_cols=45 Identities=33% Similarity=0.715 Sum_probs=38.4
Q ss_pred hcCCCcccccccccccCceEEEcCCCCce-echhHHHHHHhcCCCCCccCcCcc
Q 015232 154 LREARDCAVCLLEFEENDYVRTLPGCSHS-FHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 154 ~~~~~~C~ICle~f~~~~~~~~Lp~C~H~-FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.+++..|+||++.+.+. +.+| |||. ||..|+..| ..||+||..+.
T Consensus 292 l~~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HHTTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CcCCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 35678999999998663 6778 9999 999999988 67999999874
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1e-06 Score=85.09 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=41.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC--CCCCc--cCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH--ANCPL--CRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~--~tCPl--CR~~i~~~ 208 (411)
.....|+||++.|.++ |+... |||.|+..||..|+..+ ..||+ |+..+...
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 4567899999999876 44445 99999999999999754 46999 99977544
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.72 E-value=2e-05 Score=65.50 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=37.1
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHH-hcCCCCCccCcCccC
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-RSHANCPLCRAGIFL 207 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-~~~~tCPlCR~~i~~ 207 (411)
-|.+|--.+. ...+++| |+|+||.+|+..|. +..++||+|+..|..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 3777766543 3578998 99999999999997 456789999998854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.64 E-value=4.2e-05 Score=72.79 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=40.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCC--CCCccCcCccCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~~i~~~ 208 (411)
....|.||.+....+ ...+.|+|.||..|+..|++.+. .||.|+......
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999998876 44445999999999999997654 799999876443
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.96 E-value=0.078 Score=40.53 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=33.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcC----CCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSH----ANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~----~tCPlCR~~ 204 (411)
.....|.||.+. + .+..-..|...||..|++..|... -.||.|...
T Consensus 10 ~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999753 3 345555699999999999887543 259999754
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.10 E-value=0.16 Score=40.88 Aligned_cols=34 Identities=15% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
+..|.||++.+.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998743322222266 9999999999984
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.15 E-value=0.11 Score=42.64 Aligned_cols=49 Identities=18% Similarity=0.510 Sum_probs=38.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
..-..|-.|.-+.+. ++.. .+|.+|..|+...|.....||+|+.++...
T Consensus 26 ~G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cCcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 355679999877543 3322 569999999999999999999999988643
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.83 E-value=0.15 Score=38.10 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=35.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-----cCCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----SHANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~ 203 (411)
++...|+||...+.++...+.-..|...||..|+.--.. ..-.||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 466789999998865555555556999999999874321 3456999965
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.05 E-value=0.37 Score=43.90 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=35.7
Q ss_pred CCcccccccccccCce---EEEcCCCCceechhHHHHH------Hh-----cCCCCCccCcCc
Q 015232 157 ARDCAVCLLEFEENDY---VRTLPGCSHSFHVDCIDIW------LR-----SHANCPLCRAGI 205 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~---~~~Lp~C~H~FH~~CI~~W------l~-----~~~tCPlCR~~i 205 (411)
+..|+||...+.+++. .+....|.+.||..|+.-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3469999999988763 6666679999999998421 11 156899998753
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=83.96 E-value=0.52 Score=35.11 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=32.2
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 203 (411)
..+..|.||.+. + .+..-..|...||..|+..=+.. .-.||.|..
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 466789999873 3 44555569999999999975432 235999964
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.82 E-value=0.29 Score=44.90 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=33.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
..++.|.+|.+. ..+.....|...||..|+..-+.. .-.||.|+..
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 466789999753 345556679999999999876643 2359999764
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.25 E-value=0.37 Score=43.26 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
.++.|.||.+. ++ +.....|...||..|+..-+.. .-.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 56779999854 33 4455569999999999776543 2359999864
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.93 E-value=0.43 Score=35.60 Aligned_cols=47 Identities=23% Similarity=0.493 Sum_probs=32.2
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~i 205 (411)
..+..|.||.+. + .+..-..|...||..|+..=|.. .-.||.|....
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 457789999863 3 34444459999999999864432 23599997643
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.23 E-value=0.72 Score=35.40 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=34.9
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh----cCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR----SHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~----~~~tCPlCR~~i 205 (411)
.+...|.||.... +++.++.-..|...||..|+..-+. ..-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3455699998764 3444555556999999999976543 234599997654
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.83 E-value=1.5 Score=34.08 Aligned_cols=48 Identities=25% Similarity=0.492 Sum_probs=32.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHH-----hcCCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-----RSHANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~ 204 (411)
+...| ||...+.+....+.-..|...||..|+.--. ...-.||.|+..
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 44456 9988875444455555699999999996321 134469999764
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=75.79 E-value=1.6 Score=35.05 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=23.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
..++.|.||-- +...+. .-.-.|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l-~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESL-FPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCC-SSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccce-eccccccccccHhhcccc
Confidence 46789999953 333321 111139999999999986
No 85
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.56 E-value=2.3 Score=32.13 Aligned_cols=35 Identities=20% Similarity=0.465 Sum_probs=27.1
Q ss_pred cCCCcccccccccccCceEEEcC-CCCceechhHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLP-GCSHSFHVDCID 189 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp-~C~H~FH~~CI~ 189 (411)
+....|.+|...+.+.+..+.-. .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45678999999987777666666 699999999985
No 86
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=73.82 E-value=1.3 Score=31.80 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=30.8
Q ss_pred cccccccccccCceEEEcC-CCCceechhHHHHH----HhcCCCCCccC
Q 015232 159 DCAVCLLEFEENDYVRTLP-GCSHSFHVDCIDIW----LRSHANCPLCR 202 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp-~C~H~FH~~CI~~W----l~~~~tCPlCR 202 (411)
.|.||...+.+++..+.-. .|...||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788988876665555555 59999999997632 13556799885
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.40 E-value=1.5 Score=30.97 Aligned_cols=44 Identities=30% Similarity=0.638 Sum_probs=29.4
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRA 203 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 203 (411)
.|.||...-. .+.+..-..|...||..|++.=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4889987533 2344555569999999999753322 224999964
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.73 E-value=0.4 Score=35.02 Aligned_cols=44 Identities=30% Similarity=0.645 Sum_probs=30.6
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCR 202 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR 202 (411)
..+..|.||.+. + .+..-..|...||..|+..=|.. .-.||.|.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 467789999874 3 34445569999999999864432 22488884
No 89
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.50 E-value=0.88 Score=40.24 Aligned_cols=49 Identities=20% Similarity=0.515 Sum_probs=33.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH-----hcCCCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL-----RSHANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl-----~~~~tCPlCR~~ 204 (411)
++...| ||.....++...+....|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 355678 9998765555555555699999999996321 234469999753
No 90
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=70.71 E-value=2.5 Score=47.39 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=42.0
Q ss_pred CCCcccccccccccCceEEEcCCCC-ceechhHHHHHHhcCCCCCccCcCccCC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCS-HSFHVDCIDIWLRSHANCPLCRAGIFLT 208 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~-H~FH~~CI~~Wl~~~~tCPlCR~~i~~~ 208 (411)
+...|+|-++-++++ ++++ .| |.|-..+|+.||..+.+||+=|.++...
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 457799999999887 7787 76 6899999999999899999999887543
No 91
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=70.30 E-value=0.47 Score=35.07 Aligned_cols=47 Identities=28% Similarity=0.602 Sum_probs=32.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~i 205 (411)
..+..|.||... + .+..-..|...||..|+..=|.. .-.||.|....
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 356789999874 3 34445569999999999864432 22499996544
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.12 E-value=1.3 Score=36.71 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=31.2
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCc
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRA 203 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 203 (411)
..|.||.+.-.+.+.+..-..|...||..|++.=|.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888653333455555569999999999765532 235999964
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.68 E-value=5.3 Score=32.39 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=36.4
Q ss_pred CCCccccccccccc---CceEEEcCCCCceechhHHH-HHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEE---NDYVRTLPGCSHSFHVDCID-IWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~---~~~~~~Lp~C~H~FH~~CI~-~Wl~~~~tCPlCR~~i~ 206 (411)
....|.||=+++-. ++..+-...|+--.|..|.+ +.-..++.||-|++..-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45789999998643 33222223477888999997 45577888999998864
No 94
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.67 E-value=12 Score=29.42 Aligned_cols=25 Identities=24% Similarity=0.358 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 49 LIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
+.++++++++++++.+++++++|++
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777777777766
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.91 E-value=0.82 Score=34.46 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=31.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~ 203 (411)
..+..|.||.+. + .+..-..|...||..|+..=|.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 467789999864 3 34455569999999999864432 224999964
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.78 E-value=2.2 Score=34.38 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=32.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
..+..|.||.+. + .+..-..|.-.||..|++.=|.. .-.||.|...
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 467789999864 3 34455569999999999765532 2259999754
No 97
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=67.30 E-value=2.7 Score=34.61 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=34.3
Q ss_pred CCcccccccccccCceEEEcC-CCCceechhHHHHH---H--h-----cCCCCCccCcC
Q 015232 157 ARDCAVCLLEFEENDYVRTLP-GCSHSFHVDCIDIW---L--R-----SHANCPLCRAG 204 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp-~C~H~FH~~CI~~W---l--~-----~~~tCPlCR~~ 204 (411)
...|.||...+.+....+... .|...||..|+.-= + . .+-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 356999999986665556654 69999999998521 1 1 34469999764
No 98
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.45 E-value=1.6 Score=35.84 Aligned_cols=47 Identities=26% Similarity=0.484 Sum_probs=31.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCR 202 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR 202 (411)
.+++.|.||.+.=+. +.+..-..|+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 467889999876322 223444469999999999877532 23477765
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=65.41 E-value=3.2 Score=30.82 Aligned_cols=50 Identities=16% Similarity=0.403 Sum_probs=34.8
Q ss_pred cCCCcccccccccc-cCceEEEcCCCCceechhHHHHHHh-------cCCCCCccCcC
Q 015232 155 REARDCAVCLLEFE-ENDYVRTLPGCSHSFHVDCIDIWLR-------SHANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~-~~~~~~~Lp~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~ 204 (411)
.++..|.||..... +...+..-..|...||..|+..=+. ..-.|+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 46778999998643 2345566667999999999885331 23359999653
No 100
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.91 E-value=2.2 Score=32.74 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=30.0
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHH---------hcCCCCCccCc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL---------RSHANCPLCRA 203 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl---------~~~~tCPlCR~ 203 (411)
..-| ||....... ..+.-..|...||..|+.--. ...-.||.|+.
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3456 898876533 344444699999999985211 24567999965
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.86 E-value=8.2 Score=31.78 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=31.5
Q ss_pred CCCccccccccc-----ccCceEEEcCCCCceechhHHHHH------H-hcCCCCCccC
Q 015232 156 EARDCAVCLLEF-----EENDYVRTLPGCSHSFHVDCIDIW------L-RSHANCPLCR 202 (411)
Q Consensus 156 ~~~~C~ICle~f-----~~~~~~~~Lp~C~H~FH~~CI~~W------l-~~~~tCPlCR 202 (411)
....|.+|+..- ..+++++.-..|+..||..|+..+ + ...-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456799998753 123456666679999999999532 2 2334588885
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.42 E-value=6.9 Score=34.16 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=32.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHh-----------cCCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----------SHANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----------~~~tCPlCR~ 203 (411)
..++.|.||.+. ++ +.....|-.+||..||+.=+. ..-.||+|..
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 567889999764 33 444456999999999996542 2335999964
No 103
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.90 E-value=4.3 Score=33.71 Aligned_cols=46 Identities=17% Similarity=0.402 Sum_probs=30.7
Q ss_pred cCCCcccccccccccCceEEEcC--CCCceechhHHHHHHhcC----CCCCccCcCcc
Q 015232 155 REARDCAVCLLEFEENDYVRTLP--GCSHSFHVDCIDIWLRSH----ANCPLCRAGIF 206 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp--~C~H~FH~~CI~~Wl~~~----~tCPlCR~~i~ 206 (411)
..++.|.+|.+. + .++.-. .|...||..|+. |... -.||.|...+.
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 567789999842 3 344443 488999999998 4332 24888765544
No 104
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=62.64 E-value=8.5 Score=28.28 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015232 47 PPLIAMVVVVATAFLVVTYSRLISRH 72 (411)
Q Consensus 47 ~~lI~iI~Ila~~Flvv~~~~lI~r~ 72 (411)
+++|++++++++++++.++..++.||
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777776666555544443
No 105
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=62.59 E-value=2.5 Score=33.78 Aligned_cols=50 Identities=16% Similarity=0.382 Sum_probs=34.7
Q ss_pred cCCCccccccccc-ccCceEEEcCCCCceechhHHHHHHh--cCCCCCccCcC
Q 015232 155 REARDCAVCLLEF-EENDYVRTLPGCSHSFHVDCIDIWLR--SHANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f-~~~~~~~~Lp~C~H~FH~~CI~~Wl~--~~~tCPlCR~~ 204 (411)
+++..|.||.+.- .+.+.+.....|.-.||..|+..-+. ..-.||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4677899998753 23345666667999999999985331 23359999654
No 106
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=62.35 E-value=5.3 Score=30.64 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 015232 55 VVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 55 Ila~~Flvv~~~~lI~r~~ 73 (411)
|+++++.++++..+.+.||
T Consensus 13 vlGg~~~lll~~glcI~cc 31 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 4444444445544444443
No 107
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=62.03 E-value=8.1 Score=28.40 Aligned_cols=25 Identities=8% Similarity=0.083 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 015232 48 PLIAMVVVVATAFLVVTYSRLISRH 72 (411)
Q Consensus 48 ~lI~iI~Ila~~Flvv~~~~lI~r~ 72 (411)
++|++++++++++++.++..++.||
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777766555544443
No 108
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.76 E-value=1.1 Score=36.20 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=33.3
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
.+...|.||...-. .+.++.-..|...||..|+..=|.. .-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45668999987643 2345555569999999999843322 2249999653
No 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=61.41 E-value=1.6 Score=39.49 Aligned_cols=44 Identities=32% Similarity=0.594 Sum_probs=30.3
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHh----cCCCCCccCcC
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR----SHANCPLCRAG 204 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~----~~~tCPlCR~~ 204 (411)
++.|.+|.+. ++ +.....|...||..|+..=+. ..-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 33 333445889999999975443 22359999765
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.80 E-value=1.4 Score=35.26 Aligned_cols=51 Identities=18% Similarity=0.358 Sum_probs=36.0
Q ss_pred cCCCccccccccccc-CceEEEcCCCCceechhHHHHHHh--------cCCCCCccCcCc
Q 015232 155 REARDCAVCLLEFEE-NDYVRTLPGCSHSFHVDCIDIWLR--------SHANCPLCRAGI 205 (411)
Q Consensus 155 ~~~~~C~ICle~f~~-~~~~~~Lp~C~H~FH~~CI~~Wl~--------~~~tCPlCR~~i 205 (411)
+.+..|.||...-.. .+.+..-..|...||..|+..=|. ..-.|+.|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 457789999976432 245666667999999999986543 233599996644
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=59.83 E-value=6.1 Score=32.74 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=29.9
Q ss_pred Ccccccccccc------cCceEEEcCCCCceechhHHHHHH-------hcCCCCCccC
Q 015232 158 RDCAVCLLEFE------ENDYVRTLPGCSHSFHVDCIDIWL-------RSHANCPLCR 202 (411)
Q Consensus 158 ~~C~ICle~f~------~~~~~~~Lp~C~H~FH~~CI~~Wl-------~~~~tCPlCR 202 (411)
+.|.||+..-. +++.++.-..|+..||..|++... ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 46999987642 123555555699999999997542 2234577774
No 112
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=59.61 E-value=18 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015232 47 PPLIAMVVVVATAFLVVTYSRLISRH 72 (411)
Q Consensus 47 ~~lI~iI~Ila~~Flvv~~~~lI~r~ 72 (411)
+++|+++++++..+++.++..++.||
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777777777766655554443
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.76 E-value=11 Score=32.29 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=31.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH------h-----cCCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL------R-----SHANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl------~-----~~~tCPlCR~ 203 (411)
..++.|.||-+. .++..-..|-..||..||..-+ . ..-.|++|..
T Consensus 55 g~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 466789999764 3344445689999999999742 1 2236999954
No 114
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=58.44 E-value=4.8 Score=30.85 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=27.7
Q ss_pred CCCcccccccccccCceEEEcCC--CC-ceechhHHHHHHhc----CCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPG--CS-HSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
+..-| ||.... .++ ++.-.. |. ..||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~-~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCS-CSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCC-CCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 45567 898753 233 333334 55 699999998 432 2359999654
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.51 E-value=3.5 Score=33.42 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=29.9
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHh---cCCCCCccCc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR---SHANCPLCRA 203 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~---~~~tCPlCR~ 203 (411)
...| ||-.....+ .++.-..|.-.||..|+..=+. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 887665444 4455556999999999975322 2236999964
No 116
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.12 E-value=3.3 Score=32.28 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=30.2
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhc-----CCCCCccCc
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS-----HANCPLCRA 203 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~-----~~tCPlCR~ 203 (411)
..|.||...- ++..+..-..|...||..|++.=|.. .-.||.|..
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788998643 23445555569999999999854321 235998864
No 117
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=55.96 E-value=8.9 Score=30.58 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=30.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHHhc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS 194 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~ 194 (411)
.....|.+|.|.+++..-|.--..=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3566899999999887655432234699999999988853
No 118
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.89 E-value=4 Score=32.97 Aligned_cols=44 Identities=27% Similarity=0.598 Sum_probs=27.4
Q ss_pred CCCcccccccccccCceEEEcCC--CC-ceechhHHHHHHhc----CCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPG--CS-HSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
+..-| ||..... ++ ++.... |. ..||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44556 9988642 32 333334 54 689999997 322 3359999754
No 119
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=54.46 E-value=11 Score=28.90 Aligned_cols=49 Identities=16% Similarity=0.406 Sum_probs=33.9
Q ss_pred cCCCccccccccc-ccCceEEEcCCCCceechhHHHHHH--hcCCCCCccCc
Q 015232 155 REARDCAVCLLEF-EENDYVRTLPGCSHSFHVDCIDIWL--RSHANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f-~~~~~~~~Lp~C~H~FH~~CI~~Wl--~~~~tCPlCR~ 203 (411)
..+..|.||.+.- .+.+.+..-..|.-.||..|+..-. ...-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4677899998763 3444666666799999999997532 12234888854
No 120
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.11 E-value=8.4 Score=30.64 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=27.5
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL 192 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl 192 (411)
.+...|.+|...|..-..-.....||++||..|...+.
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 35568999999987543333344599999999987653
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=53.64 E-value=3.5 Score=31.44 Aligned_cols=44 Identities=30% Similarity=0.591 Sum_probs=28.5
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHh----c-CCCCCccCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR----S-HANCPLCRA 203 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~----~-~~tCPlCR~ 203 (411)
.|.||...- ++..+..-..|...||..|++.=|. . .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776542 2334555556999999999985432 1 335999864
No 122
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.29 E-value=8.7 Score=29.94 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=26.4
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
.+...|.+|...|..-..-..--.||++||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4566899999999754322233359999999997653
No 123
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=51.89 E-value=2.9 Score=32.66 Aligned_cols=44 Identities=32% Similarity=0.606 Sum_probs=28.4
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhc----C-CCCCccCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----H-ANCPLCRA 203 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~-~tCPlCR~ 203 (411)
.|.||...- +.+.+..-..|...||..|++.-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543 23345555569999999999865532 2 35999875
No 124
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.37 E-value=3.6 Score=31.23 Aligned_cols=47 Identities=21% Similarity=0.477 Sum_probs=31.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHHH---hcCCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL---RSHANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl---~~~~tCPlCR~ 203 (411)
.+...| ||..... ++..+.-..|...||..|+.--. ...-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 355667 9987654 44445555699999999996422 13345888854
No 125
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=50.18 E-value=11 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.7
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
.+...|.+|...|..-..-..--.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4567899999999764322233359999999997654
No 126
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=49.91 E-value=11 Score=37.86 Aligned_cols=55 Identities=16% Similarity=0.338 Sum_probs=32.6
Q ss_pred CcccccccccccCceEEEcCCCCceechh--HHHHHHhc--CCCCCccCcCccCCCCCCchh
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVD--CIDIWLRS--HANCPLCRAGIFLTESPFVPI 215 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~--CI~~Wl~~--~~tCPlCR~~i~~~~~~~~~~ 215 (411)
..|+|-+..+..+ ++-.. |.|+-|.+ -+...... .-.||+|...+...+......
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~ 308 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEF 308 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHH
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHH
Confidence 4688777776554 66665 99984433 22222222 335999988876555444333
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.63 E-value=10 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=26.0
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
.+...|.+|...|..-..-.....||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3566899999998754322233359999999987543
No 128
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=48.65 E-value=10 Score=34.18 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCccCcccccccccCCCC---CCccccccccccc-ccccccc
Q 015232 248 TTAASTNGSEITPCVDDVAVAINNNNF---NSEERFNGRDFLL-KRSYSFG 294 (411)
Q Consensus 248 ~~~ast~~~E~~p~~d~~s~~~~~n~~---Ns~~~F~~rd~vl-krs~s~G 294 (411)
+.++.++...+...+|..+.......+ ++++||+...+|| +++|++|
T Consensus 12 tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSG 62 (188)
T 2vok_A 12 TLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSG 62 (188)
T ss_dssp CBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSS
T ss_pred EECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCC
Confidence 344455666666666666666544322 6788998877898 9999999
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=48.04 E-value=11 Score=29.90 Aligned_cols=37 Identities=16% Similarity=0.347 Sum_probs=26.8
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
.+...|.+|...|..-..-...-.||++||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4566899999999765333333359999999997654
No 130
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=47.39 E-value=5.4 Score=29.41 Aligned_cols=43 Identities=28% Similarity=0.576 Sum_probs=26.6
Q ss_pred CCCcccccccccccCceEEEcCC--CC-ceechhHHHHHHhc----CCCCCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPG--CS-HSFHVDCIDIWLRS----HANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 203 (411)
+..-| ||.... .+ .++.-.. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 898763 23 3444444 44 689999998 432 235998854
No 131
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=47.39 E-value=29 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
...|.-|-+.+.....+.. -+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEccccc--------CcCcCCCccc
Confidence 4689999999876543433 6889998885 5888988774
No 132
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.24 E-value=5.7 Score=29.25 Aligned_cols=43 Identities=28% Similarity=0.584 Sum_probs=27.2
Q ss_pred CCCcccccccccccCceEEEcCC--CC-ceechhHHHHHHhc----CCCCCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPG--CS-HSFHVDCIDIWLRS----HANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~FH~~CI~~Wl~~----~~tCPlCR~ 203 (411)
+..-| ||.... .+ .++.-.. |. ..||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 998764 23 3444445 55 699999998 332 235999854
No 133
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=46.17 E-value=15 Score=36.73 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=33.1
Q ss_pred CcccccccccccCceEEEcCCCCce--echhHHHHHHhc--CCCCCccCcCccCCCCCCch
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHS--FHVDCIDIWLRS--HANCPLCRAGIFLTESPFVP 214 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~--FH~~CI~~Wl~~--~~tCPlCR~~i~~~~~~~~~ 214 (411)
..|+|-...++.+ ++-.. |.|+ |-..-+...... .-.||+|...+...+.....
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~ 273 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDG 273 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBH
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcH
Confidence 4688888777655 66665 9998 443322222222 23599999887655544333
No 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=45.76 E-value=5.7 Score=37.26 Aligned_cols=45 Identities=29% Similarity=0.561 Sum_probs=26.7
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHh----c-CCCCCccCc
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR----S-HANCPLCRA 203 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~----~-~~tCPlCR~ 203 (411)
..|.+|...- ++..+.....|...||..|++.=|. . .-.||.|..
T Consensus 175 c~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3588887642 2334455556999999999995442 1 235999964
No 135
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.27 E-value=14 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=23.5
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHH
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDI 190 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~ 190 (411)
..|.+|...|..-..-..--.||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 579999999875432223335999999998753
No 136
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.94 E-value=3 Score=35.39 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=31.4
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~ 204 (411)
....|..|...|..-..-.....||++||..|..........|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 4468999999986543223333599999999987665556668888543
No 137
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=44.69 E-value=15 Score=33.07 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCccCcccccccccCCC-C---CCccccccccccc-cccccccc
Q 015232 246 PTTTAASTNGSEITPCVDDVAVAINNNN-F---NSEERFNGRDFLL-KRSYSFGF 295 (411)
Q Consensus 246 ~~~~~ast~~~E~~p~~d~~s~~~~~n~-~---Ns~~~F~~rd~vl-krs~s~G~ 295 (411)
+.+.++.++...+...+|..+....... + +++++|+..-+|| +++|++|-
T Consensus 13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGr 67 (193)
T 3kb5_A 13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGE 67 (193)
T ss_dssp CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSE
T ss_pred cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCC
Confidence 3445556667777777777776665443 2 6788998888899 99999983
No 138
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=44.61 E-value=13 Score=33.76 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCccCcccccccccCCCC---CCccccccccccc-ccccccc
Q 015232 246 PTTTAASTNGSEITPCVDDVAVAINNNNF---NSEERFNGRDFLL-KRSYSFG 294 (411)
Q Consensus 246 ~~~~~ast~~~E~~p~~d~~s~~~~~n~~---Ns~~~F~~rd~vl-krs~s~G 294 (411)
+.+.++.++...+...+|..+.......+ ++++||+....|| +++|++|
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSG 63 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSG 63 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSS
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCC
Confidence 34445566666676777776666544322 6788998888899 9999999
No 139
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.42 E-value=17 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=29.8
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
...|..|-+.+...+.++.. -+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 45799999998876544433 5789998775 58888877643
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.35 E-value=10 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=25.2
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
++..|.+|...|.--..-.....||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 347899999998654322233359999999886643
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.22 E-value=11 Score=34.91 Aligned_cols=35 Identities=20% Similarity=0.481 Sum_probs=25.6
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHH
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW 191 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W 191 (411)
+..|.+|...|..-..-.....||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999998764322333459999999997654
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.95 E-value=13 Score=29.07 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=24.1
Q ss_pred cCCCcccccccccccCceEEEcCCCCceechhHHH
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCSHSFHVDCID 189 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~ 189 (411)
.+...|.+|...|..-..--.--.||++||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45678999999986543222223599999988854
No 143
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=43.86 E-value=13 Score=33.45 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCccCcccccccccCCCC---CCccccccccccc-ccccccc
Q 015232 247 TTTAASTNGSEITPCVDDVAVAINNNNF---NSEERFNGRDFLL-KRSYSFG 294 (411)
Q Consensus 247 ~~~~ast~~~E~~p~~d~~s~~~~~n~~---Ns~~~F~~rd~vl-krs~s~G 294 (411)
.+.++.++...+...+|..+.......+ +++++|+...+|| +++|++|
T Consensus 15 ~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssG 66 (191)
T 2wl1_A 15 VILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSG 66 (191)
T ss_dssp CEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSS
T ss_pred eEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCC
Confidence 3444556666666666666665544322 7788998888899 9999999
No 144
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=42.35 E-value=56 Score=22.57 Aligned_cols=25 Identities=24% Similarity=0.358 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015232 49 LIAMVVVVATAFLVVTYSRLISRHL 73 (411)
Q Consensus 49 lI~iI~Ila~~Flvv~~~~lI~r~~ 73 (411)
+.+++++++++.++-++++++.|++
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666677777776
No 145
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.81 E-value=15 Score=28.00 Aligned_cols=40 Identities=23% Similarity=0.557 Sum_probs=30.5
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|..|-+.+.+++.+.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45689999999887766554 4789998775 5888887764
No 146
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.23 E-value=17 Score=26.32 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-..+...+.+... -+..||..|. .|-.|...|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 456799999998877655443 5788998887 58888877654
No 147
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.50 E-value=15 Score=27.33 Aligned_cols=43 Identities=33% Similarity=0.564 Sum_probs=30.2
Q ss_pred CcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCcc
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLC 201 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlC 201 (411)
..|-.|+..|.+.. .-.-+.|++.|+.+|=.=--..-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986432 23466799999999954333444569988
No 148
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=40.00 E-value=3.3 Score=31.21 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=26.6
Q ss_pred CcccccccccccCceEEEcC--CCCceechhHHHHHH---h-----cCCCCCccCc
Q 015232 158 RDCAVCLLEFEENDYVRTLP--GCSHSFHVDCIDIWL---R-----SHANCPLCRA 203 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp--~C~H~FH~~CI~~Wl---~-----~~~tCPlCR~ 203 (411)
..| ||-.....+.. +..- .|...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~m-I~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSM-IQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCE-EECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCE-EEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 79665545543 3332 389999999984210 1 1346999974
No 149
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.82 E-value=11 Score=28.49 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=32.0
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHH----hcCCCCCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWL----RSHANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl----~~~~tCPlCR~ 203 (411)
....| ||.....+++..+.-..|...||..|+.--. ..+-.||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 44568 7988765665455555699999999986431 23345999964
No 150
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.38 E-value=17 Score=26.61 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=29.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-+.+...+.+... -+..||..|. .|-.|...|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTT
T ss_pred cCCCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCC
Confidence 346799999998865443332 6789998775 58888877643
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.11 E-value=6.7 Score=38.96 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHh-------cCCCCCccCcCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-------SHANCPLCRAGI 205 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-------~~~tCPlCR~~i 205 (411)
....|.+|...|..-..-.....||++||..|...++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45689999998865322222235999999999976641 123477775443
No 152
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.02 E-value=18 Score=31.09 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=31.9
Q ss_pred cCCCcccccccccc-cCceEEEcCCCCceechhHHHHHHhc-CC---CCCccCc
Q 015232 155 REARDCAVCLLEFE-ENDYVRTLPGCSHSFHVDCIDIWLRS-HA---NCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~-~~~~~~~Lp~C~H~FH~~CI~~Wl~~-~~---tCPlCR~ 203 (411)
..+..|.+|...|. ....-++...|.|.+|..|-..-... +. .|=+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 45778999999994 33344566679999999886532111 11 2777754
No 153
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.87 E-value=21 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=30.8
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|..|-+.+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccC
Confidence 35679999999987766543 5789998775 5888988775
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.81 E-value=25 Score=26.39 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=30.3
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
...|..|-+.+..++.++.. -+..||..|. .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 46899999998876654433 5789998775 58888877643
No 155
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.57 E-value=11 Score=27.94 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=26.9
Q ss_pred CCCcccccccccccCceEEEcCC--CC-ceechhHHHHHH--hcCCCCCccCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPG--CS-HSFHVDCIDIWL--RSHANCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~--C~-H~FH~~CI~~Wl--~~~~tCPlCR~ 203 (411)
+..-| ||.... .+ .++.-.. |. ..||..|+.-=- ..+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34456 998853 34 3444445 44 899999997210 12335999964
No 156
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.13 E-value=6.3 Score=32.21 Aligned_cols=45 Identities=22% Similarity=0.476 Sum_probs=29.4
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcC
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAG 204 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~ 204 (411)
.|.||...-.+ +.+..-..|...||..|++.=|.. .-.||.|..-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765333 345555569999999999864432 2348888553
No 157
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.73 E-value=19 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-+.+...+.+... -+..||..|. .|-.|+..|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 456899999998765544333 5789998775 58888877654
No 158
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.80 E-value=21 Score=26.49 Aligned_cols=37 Identities=22% Similarity=0.531 Sum_probs=20.8
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.|..|-+.+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE---CCccccCCCC--------CccccCccCC
Confidence 36666666655544332 3566776554 3666665553
No 159
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.49 E-value=21 Score=26.09 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=29.3
Q ss_pred CCCccccccccccc--CceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEE--NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~--~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|..|-+.+.. .+.++.. -+..||..|+ .|-.|+..|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCC
Confidence 35679999999875 3333333 6889998876 5888888764
No 160
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=32.97 E-value=10 Score=38.87 Aligned_cols=48 Identities=19% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHH---H--hcCCCCCccCcC
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIW---L--RSHANCPLCRAG 204 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~W---l--~~~~tCPlCR~~ 204 (411)
...++||...+..+...+....|...||..|+.-- . ..+-.||.|+..
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred CCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 34566998876544555555569999999999521 1 134579999753
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.66 E-value=22 Score=25.97 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=27.7
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGI 205 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i 205 (411)
....|..|-+.+...+.++.. -+..||..|+ .|-.|+..|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQL 43 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBC
T ss_pred CCCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcC
Confidence 345799999887764433333 5788898775 488888776
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.58 E-value=28 Score=25.85 Aligned_cols=41 Identities=17% Similarity=0.525 Sum_probs=29.0
Q ss_pred CCCccccccccccc--CceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEE--NDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~--~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
-...|..|-+.+.. ...++.. -+..||..|. .|-.|+..|.
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCS
T ss_pred cCCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCC
Confidence 34679999999875 3333333 6789999886 5888887764
No 163
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=30.18 E-value=4.9 Score=33.31 Aligned_cols=46 Identities=20% Similarity=0.508 Sum_probs=30.0
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhc----CCCCCccCcCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRS----HANCPLCRAGI 205 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~----~~tCPlCR~~i 205 (411)
.|.||...-.. ..+..-..|...||..|+..=|.. .-.||.|...+
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 58888775333 344555569999999999853322 22488886543
No 164
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.92 E-value=39 Score=25.88 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCCcccccccccccCceEEEcC--CCCceechhHHHHHH---------hcCCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLP--GCSHSFHVDCIDIWL---------RSHANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp--~C~H~FH~~CI~~Wl---------~~~~tCPlCR~~ 204 (411)
....| ||-.....+ ..+.-- .|...||..|+.--- ..+-.||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44567 898874444 334443 599999999996321 124469999653
No 165
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.73 E-value=44 Score=29.60 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=32.1
Q ss_pred cCCCcccccccccccCceEEEcC--CCCceechhHHHHHHhc----------CCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLP--GCSHSFHVDCIDIWLRS----------HANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp--~C~H~FH~~CI~~Wl~~----------~~tCPlCR~ 203 (411)
..+.-|.||-+. ..+.... .|...||..||+.++.. +-.|=+|.-
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 467789999764 3555554 58899999999998632 224888853
No 166
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=28.35 E-value=96 Score=20.78 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015232 51 AMVVVVATAFLVVTYSR 67 (411)
Q Consensus 51 ~iI~Ila~~Flvv~~~~ 67 (411)
+++++++++++.+..+.
T Consensus 7 ~ivalivalIiaIVVWt 23 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWS 23 (36)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333344
No 167
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.73 E-value=24 Score=26.53 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=29.2
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-+.+.+++.+.. -+..||..|. .|-.|+..|..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCC
Confidence 34679999999877765443 5789998775 47888877643
No 168
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=27.71 E-value=12 Score=26.44 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=26.1
Q ss_pred ccccccccCceEEEcCCCCceechhHHHHHH---hcCCCCCccCc
Q 015232 162 VCLLEFEENDYVRTLPGCSHSFHVDCIDIWL---RSHANCPLCRA 203 (411)
Q Consensus 162 ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl---~~~~tCPlCR~ 203 (411)
||..... +...+.-..|...||..|+.--. ..+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 33444444599999999986322 23345888864
No 169
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=27.46 E-value=43 Score=25.36 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=32.3
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHh-----cCCCCCccCcC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----SHANCPLCRAG 204 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~~ 204 (411)
......||...+..+...+.-..|.-.||..|+.--.. ..-.||.|+..
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34445589877654445555556999999999963321 34469999653
No 170
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.27 E-value=27 Score=26.50 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=30.1
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-+.+...+.+.. -+..||..|+ .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCC
Confidence 45679999999876665542 5789998885 47788777643
No 171
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.86 E-value=14 Score=38.26 Aligned_cols=45 Identities=22% Similarity=0.516 Sum_probs=30.7
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHh-----cCCCCCccCc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLR-----SHANCPLCRA 203 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~-----~~~tCPlCR~ 203 (411)
..+||...+..+...+....|...||..|+.---. .+-.||.|+.
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 34499887654455555666999999999963211 2346999974
No 172
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.40 E-value=36 Score=29.83 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=31.3
Q ss_pred CCCcccccccccccC-ceEEEcCCCCceechhHHHHHHhcCC--CCCccCc
Q 015232 156 EARDCAVCLLEFEEN-DYVRTLPGCSHSFHVDCIDIWLRSHA--NCPLCRA 203 (411)
Q Consensus 156 ~~~~C~ICle~f~~~-~~~~~Lp~C~H~FH~~CI~~Wl~~~~--tCPlCR~ 203 (411)
.+..|.+|+..|.-- ..-.+...|.|.+|..|-. |+.... .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 578899999987432 2234555699999999983 443222 2777754
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=39 Score=26.00 Aligned_cols=41 Identities=20% Similarity=0.545 Sum_probs=30.2
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-+.+...+.+. . -+..||..|+ .|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCC
Confidence 3567999999998766543 2 6889998885 47788777643
No 174
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.61 E-value=21 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.507 Sum_probs=15.8
Q ss_pred cccccccccccCceEEEcCCCCceechhHH
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCI 188 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI 188 (411)
.|..|-..+...+.+... -++.||..|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTC
T ss_pred cccCCCCeecCCceEEEE--CCcccccccC
Confidence 577777766554333222 4666776664
No 175
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.96 E-value=24 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=20.4
Q ss_pred CcccccccccccCceEEEcCCCCceechhHH
Q 015232 158 RDCAVCLLEFEENDYVRTLPGCSHSFHVDCI 188 (411)
Q Consensus 158 ~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI 188 (411)
+.|+.|-...-..+++.. -|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 469999888776654442 5789999883
No 176
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.41 E-value=40 Score=33.94 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=31.9
Q ss_pred cCCCcccccccccccCceEEEcC--CCCceechhHHHHHHh----------cCCCCCccCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLP--GCSHSFHVDCIDIWLR----------SHANCPLCRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp--~C~H~FH~~CI~~Wl~----------~~~tCPlCR~ 203 (411)
..+..|.||-+. ..+.... .|...||..||+.++. .+-.|=+|.-
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 456788888754 3445544 6999999999999972 2336888864
No 177
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.27 E-value=50 Score=28.45 Aligned_cols=40 Identities=25% Similarity=0.683 Sum_probs=28.0
Q ss_pred CCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 157 ARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 157 ~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
...|..|-+.+...+.+... -++.||..|. .|-.|...|.
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 45788888877665544333 5788888886 6888877764
No 178
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.91 E-value=19 Score=28.89 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=27.2
Q ss_pred cCCCcccccccccccCceEEEcCCCC---ceechhHHHHHH--hcCCCCCc-cCc
Q 015232 155 REARDCAVCLLEFEENDYVRTLPGCS---HSFHVDCIDIWL--RSHANCPL-CRA 203 (411)
Q Consensus 155 ~~~~~C~ICle~f~~~~~~~~Lp~C~---H~FH~~CI~~Wl--~~~~tCPl-CR~ 203 (411)
++..-| ||.... .++ ++.-..|. ..||..|+.-=- ..+-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 345566 998753 233 34344455 799999996210 12345999 863
No 179
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.91 E-value=14 Score=30.66 Aligned_cols=24 Identities=21% Similarity=0.619 Sum_probs=15.2
Q ss_pred CCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 178 GCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 178 ~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
+||+.|. .=+.....||.|+..-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 4899981 11233456999998644
No 180
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.50 E-value=44 Score=24.97 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=28.4
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|..|-+.+.. +.+ .- -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCC
Confidence 45679999998875 322 22 6789998886 5888887764
No 181
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=21.79 E-value=91 Score=20.96 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 015232 46 SPPLIAMVVVVATAFLVVTYS 66 (411)
Q Consensus 46 s~~lI~iI~Ila~~Flvv~~~ 66 (411)
.+...++.+.+-++|++++|+
T Consensus 7 ~fiAt~Lfi~iPt~FLlilYv 27 (36)
T 3arc_M 7 GLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344455555666666665443
No 182
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.60 E-value=57 Score=24.88 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=28.8
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCccC
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIFL 207 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~~ 207 (411)
....|..|-+.+.. +.+ .. -+..||..|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccCC--------EecCCCCCCCC
Confidence 45679999998875 322 22 6789998875 58888887743
No 183
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.14 E-value=53 Score=25.15 Aligned_cols=39 Identities=21% Similarity=0.490 Sum_probs=28.5
Q ss_pred CCCcccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 156 EARDCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 156 ~~~~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
....|..|-+.+. ++.+. . -+..||..|+ .|-.|+..|.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccCC--------ccCCCCCCCC
Confidence 4567999999885 33333 2 6899998776 5888888775
No 184
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=20.87 E-value=1.3e+02 Score=21.76 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHH
Q 015232 39 TKPPVDFSPPLIAMVVVVATAFLVVT 64 (411)
Q Consensus 39 ~~~~~~fs~~lI~iI~Ila~~Flvv~ 64 (411)
.+++..++|..+++++++.+++++++
T Consensus 22 e~~giKi~P~~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 22 TFSKIRVKPEHVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCeehhhhHHHHHHHHHHH
Confidence 35578899987777777766666543
No 185
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.29 E-value=73 Score=27.93 Aligned_cols=38 Identities=21% Similarity=0.663 Sum_probs=24.1
Q ss_pred cccccccccccCceEEEcCCCCceechhHHHHHHhcCCCCCccCcCcc
Q 015232 159 DCAVCLLEFEENDYVRTLPGCSHSFHVDCIDIWLRSHANCPLCRAGIF 206 (411)
Q Consensus 159 ~C~ICle~f~~~~~~~~Lp~C~H~FH~~CI~~Wl~~~~tCPlCR~~i~ 206 (411)
.|..|-..+...+.+... -++.||..|. .|-.|...|.
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~CF--------~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKCF--------TCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGGC--------BCTTTCCBCC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCCC--------eECCCCCCCC
Confidence 588887777654443332 5778887773 5777766653
Done!