BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015235
         (411 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WVP|A Chain A, Synthetically Modified Ompg
          Length = 286

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 42  FRSYPLQNNFNSTLSFAINKQDYSDLGSDVFHSPSV 77
           F  Y  QN  + +L +A   QD+ +  SD FH   V
Sbjct: 239 FYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGV 274


>pdb|2JQY|A Chain A, Outer Membrane Protein G
          Length = 280

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 42  FRSYPLQNNFNSTLSFAINKQDYSDLGSDVFHSPSV 77
           F  Y  QN  + +L +A   QD+ +  SD FH   V
Sbjct: 239 FYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGV 274


>pdb|2F1C|X Chain X, Crystal Structure Of The Monomeric Porin Ompg
          Length = 286

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 42  FRSYPLQNNFNSTLSFAINKQDYSDLGSDVFHSPSV 77
           F  Y  QN  + +L +A   QD+ +  SD FH   V
Sbjct: 239 FYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGV 274


>pdb|2IWV|A Chain A, Structure Of The Monomeric Outer Membrane Porin Ompg In
           The Open And Closed Conformation
 pdb|2IWV|B Chain B, Structure Of The Monomeric Outer Membrane Porin Ompg In
           The Open And Closed Conformation
 pdb|2IWV|C Chain C, Structure Of The Monomeric Outer Membrane Porin Ompg In
           The Open And Closed Conformation
 pdb|2IWV|D Chain D, Structure Of The Monomeric Outer Membrane Porin Ompg In
           The Open And Closed Conformation
 pdb|2IWW|A Chain A, Structure Of The Monomeric Outer Membrane Porin Ompg In
           The Open And Closed Conformation
 pdb|2IWW|B Chain B, Structure Of The Monomeric Outer Membrane Porin Ompg In
           The Open And Closed Conformation
          Length = 281

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 42  FRSYPLQNNFNSTLSFAINKQDYSDLGSDVFHSPSV 77
           F  Y  QN  + +L +A   QD+ +  SD FH   V
Sbjct: 240 FYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGV 275


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,247,658
Number of Sequences: 62578
Number of extensions: 520597
Number of successful extensions: 1237
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 4
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)