Query 015235
Match_columns 411
No_of_seqs 223 out of 822
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:23:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 6.2E-63 1.3E-67 513.2 26.7 345 64-409 70-459 (464)
2 PF03016 Exostosin: Exostosin 100.0 3.9E-56 8.5E-61 435.4 21.2 284 64-363 2-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 99.9 1.3E-26 2.9E-31 235.1 16.0 291 87-405 194-526 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 4.7E-22 1E-26 201.6 16.7 276 85-376 95-383 (691)
5 cd03814 GT1_like_2 This family 96.7 0.005 1.1E-07 59.8 7.6 94 289-385 258-353 (364)
6 cd03801 GT1_YqgM_like This fam 96.6 0.0058 1.3E-07 58.4 7.5 94 289-385 267-363 (374)
7 PF00534 Glycos_transf_1: Glyc 96.5 0.0039 8.4E-08 55.3 5.2 85 289-376 84-170 (172)
8 PF00852 Glyco_transf_10: Glyc 96.5 0.0056 1.2E-07 62.1 6.8 142 216-364 138-296 (349)
9 cd03822 GT1_ecORF704_like This 96.4 0.0087 1.9E-07 58.3 7.5 94 289-386 259-356 (366)
10 cd03820 GT1_amsD_like This fam 96.2 0.013 2.8E-07 55.9 7.2 95 289-385 244-340 (348)
11 cd03794 GT1_wbuB_like This fam 95.9 0.021 4.6E-07 55.3 7.4 94 289-385 286-387 (394)
12 cd03819 GT1_WavL_like This fam 95.8 0.027 5.8E-07 55.3 7.4 94 289-385 255-353 (355)
13 cd03809 GT1_mtfB_like This fam 95.7 0.022 4.8E-07 55.4 6.6 93 289-386 264-358 (365)
14 cd04962 GT1_like_5 This family 95.6 0.033 7.2E-07 55.1 7.4 94 289-385 262-358 (371)
15 TIGR03449 mycothiol_MshA UDP-N 95.6 0.042 9.1E-07 55.7 8.0 96 289-387 294-391 (405)
16 PLN02871 UDP-sulfoquinovose:DA 95.5 0.037 8E-07 57.9 7.7 99 289-390 323-426 (465)
17 cd03808 GT1_cap1E_like This fa 95.5 0.04 8.8E-07 52.7 7.3 93 289-384 255-350 (359)
18 cd03800 GT1_Sucrose_synthase T 95.3 0.037 8E-07 55.2 6.6 95 289-386 294-391 (398)
19 cd03821 GT1_Bme6_like This fam 95.3 0.041 8.9E-07 53.2 6.8 92 289-385 273-367 (375)
20 cd03818 GT1_ExpC_like This fam 95.2 0.064 1.4E-06 54.5 7.9 94 289-385 292-388 (396)
21 cd05844 GT1_like_7 Glycosyltra 95.1 0.088 1.9E-06 52.0 8.6 95 289-386 256-359 (367)
22 cd03798 GT1_wlbH_like This fam 95.1 0.038 8.2E-07 53.1 5.6 94 289-385 270-364 (377)
23 TIGR03088 stp2 sugar transfera 95.1 0.059 1.3E-06 53.9 7.1 95 289-386 264-361 (374)
24 cd03823 GT1_ExpE7_like This fa 95.0 0.063 1.4E-06 51.9 7.0 87 289-378 254-343 (359)
25 cd03807 GT1_WbnK_like This fam 94.9 0.055 1.2E-06 52.1 6.2 93 289-386 260-355 (365)
26 TIGR02149 glgA_Coryne glycogen 94.8 0.08 1.7E-06 53.0 7.1 95 289-386 272-375 (388)
27 PRK09814 beta-1,6-galactofuran 94.7 0.055 1.2E-06 54.1 5.9 88 289-382 218-316 (333)
28 cd03817 GT1_UGDG_like This fam 94.4 0.16 3.4E-06 49.1 8.1 90 289-382 270-361 (374)
29 cd04951 GT1_WbdM_like This fam 94.1 0.14 3.1E-06 50.0 7.2 91 290-385 255-348 (360)
30 cd03799 GT1_amsK_like This is 94.0 0.18 4E-06 49.1 7.6 95 289-386 247-350 (355)
31 PF13524 Glyco_trans_1_2: Glyc 93.9 0.18 3.9E-06 40.3 6.3 81 301-385 2-84 (92)
32 cd03805 GT1_ALG2_like This fam 93.8 0.21 4.6E-06 50.0 7.9 92 290-385 292-386 (392)
33 PRK15427 colanic acid biosynth 93.5 0.26 5.6E-06 50.8 8.0 94 289-385 290-393 (406)
34 cd03806 GT1_ALG11_like This fa 93.4 0.28 6.1E-06 50.8 8.2 93 289-385 316-414 (419)
35 PRK15484 lipopolysaccharide 1, 93.3 0.24 5.1E-06 50.4 7.3 95 289-386 268-366 (380)
36 cd03804 GT1_wbaZ_like This fam 93.3 0.14 3E-06 50.7 5.4 71 289-363 253-323 (351)
37 cd04949 GT1_gtfA_like This fam 93.2 0.19 4.2E-06 50.1 6.4 93 290-385 271-366 (372)
38 TIGR02095 glgA glycogen/starch 92.4 0.87 1.9E-05 47.6 10.3 93 290-387 358-462 (473)
39 TIGR02472 sucr_P_syn_N sucrose 92.2 0.34 7.5E-06 50.3 6.9 85 299-386 342-429 (439)
40 PRK10307 putative glycosyl tra 92.2 0.23 5E-06 50.6 5.5 95 289-386 295-396 (412)
41 cd03802 GT1_AviGT4_like This f 92.0 0.52 1.1E-05 45.6 7.5 70 289-363 235-305 (335)
42 cd04955 GT1_like_6 This family 91.5 1.7 3.6E-05 42.6 10.5 92 289-386 259-353 (363)
43 cd03825 GT1_wcfI_like This fam 91.2 0.92 2E-05 44.3 8.4 93 289-384 256-351 (365)
44 TIGR03087 stp1 sugar transfera 91.2 0.7 1.5E-05 47.0 7.7 91 290-386 290-385 (397)
45 cd03793 GT1_Glycogen_synthase_ 91.0 0.33 7.1E-06 52.5 5.1 109 289-398 466-588 (590)
46 cd03811 GT1_WabH_like This fam 90.7 0.88 1.9E-05 43.2 7.6 90 290-382 256-351 (353)
47 PRK00654 glgA glycogen synthas 90.7 0.87 1.9E-05 47.7 8.1 92 291-387 350-452 (466)
48 cd03792 GT1_Trehalose_phosphor 90.5 0.81 1.8E-05 45.9 7.4 93 289-386 265-360 (372)
49 KOG2619 Fucosyltransferase [Ca 90.3 2 4.4E-05 44.0 9.9 120 245-369 194-322 (372)
50 PRK14098 glycogen synthase; Pr 89.9 2.2 4.8E-05 45.3 10.3 94 290-388 374-476 (489)
51 PHA01633 putative glycosyl tra 89.7 0.75 1.6E-05 46.6 6.3 41 289-330 215-255 (335)
52 PF13692 Glyco_trans_1_4: Glyc 89.6 0.43 9.4E-06 40.3 3.9 69 289-362 62-131 (135)
53 PLN02949 transferase, transfer 89.5 1 2.2E-05 47.6 7.3 95 289-386 346-445 (463)
54 PRK09922 UDP-D-galactose:(gluc 89.1 0.56 1.2E-05 47.0 4.9 72 290-363 250-321 (359)
55 cd03813 GT1_like_3 This family 88.4 1.1 2.4E-05 47.0 6.8 95 288-385 361-464 (475)
56 PRK14099 glycogen synthase; Pr 88.3 1.7 3.6E-05 46.1 8.1 96 290-390 361-471 (485)
57 PHA01630 putative group 1 glyc 88.3 1.3 2.8E-05 44.6 6.8 40 289-329 201-240 (331)
58 cd04946 GT1_AmsK_like This fam 88.2 1.8 4E-05 44.4 8.1 93 290-385 301-399 (407)
59 cd03795 GT1_like_4 This family 87.5 1.9 4.1E-05 42.0 7.4 94 289-385 255-354 (357)
60 cd03791 GT1_Glycogen_synthase_ 85.9 2 4.4E-05 44.6 7.1 91 291-386 364-465 (476)
61 cd03816 GT1_ALG1_like This fam 85.5 2.5 5.4E-05 43.6 7.3 86 288-379 305-399 (415)
62 cd03796 GT1_PIG-A_like This fa 84.2 2 4.4E-05 43.6 5.9 97 289-390 261-360 (398)
63 TIGR02468 sucrsPsyn_pln sucros 84.1 2.7 5.9E-05 48.5 7.4 85 299-386 573-659 (1050)
64 PLN02939 transferase, transfer 82.4 4.1 8.9E-05 46.7 7.8 95 293-391 852-960 (977)
65 TIGR01133 murG undecaprenyldip 79.2 3.9 8.5E-05 40.2 5.8 83 290-377 243-334 (348)
66 KOG1387 Glycosyltransferase [C 78.3 12 0.00025 38.3 8.6 88 290-382 349-443 (465)
67 PRK15490 Vi polysaccharide bio 77.5 6 0.00013 42.9 6.8 63 290-355 465-527 (578)
68 PLN00142 sucrose synthase 76.2 11 0.00025 42.5 8.8 92 293-387 661-760 (815)
69 PF00919 UPF0004: Uncharacteri 76.1 3.5 7.6E-05 34.1 3.7 35 109-144 10-45 (98)
70 TIGR02918 accessory Sec system 74.8 9.5 0.00021 40.7 7.5 93 290-385 385-487 (500)
71 PLN02316 synthase/transferase 69.4 7 0.00015 45.3 5.2 97 293-391 915-1027(1036)
72 PRK13608 diacylglycerol glucos 69.1 21 0.00045 36.5 8.3 83 290-381 266-355 (391)
73 cd03812 GT1_CapH_like This fam 68.7 11 0.00025 36.6 6.1 71 289-363 258-328 (358)
74 TIGR02470 sucr_synth sucrose s 68.2 24 0.00051 39.9 8.9 87 298-387 644-737 (784)
75 cd03788 GT1_TPS Trehalose-6-Ph 67.5 7.5 0.00016 40.9 4.7 89 288-381 351-445 (460)
76 smart00672 CAP10 Putative lipo 67.5 38 0.00083 32.9 9.3 136 243-381 79-231 (256)
77 cd04950 GT1_like_1 Glycosyltra 65.8 6.4 0.00014 39.8 3.7 67 289-362 265-336 (373)
78 COG0438 RfaG Glycosyltransfera 62.2 16 0.00035 33.8 5.5 40 290-330 269-308 (381)
79 TIGR02400 trehalose_OtsA alpha 62.1 26 0.00056 37.0 7.5 84 288-377 346-436 (456)
80 PLN02605 monogalactosyldiacylg 61.6 22 0.00048 36.0 6.8 78 290-377 275-361 (382)
81 PRK00726 murG undecaprenyldiph 61.2 21 0.00045 35.4 6.4 83 290-377 245-337 (357)
82 PRK10125 putative glycosyl tra 60.3 26 0.00056 36.1 7.1 67 289-359 298-364 (405)
83 PRK13609 diacylglycerol glucos 57.0 76 0.0016 31.8 9.7 80 290-378 266-352 (380)
84 cd01635 Glycosyltransferase_GT 54.3 17 0.00036 32.3 4.0 41 289-330 173-213 (229)
85 cd03785 GT1_MurG MurG is an N- 52.0 42 0.0009 32.9 6.8 84 289-378 244-338 (350)
86 TIGR00236 wecB UDP-N-acetylglu 48.2 1.6E+02 0.0034 29.4 10.3 94 288-401 265-361 (365)
87 PRK05749 3-deoxy-D-manno-octul 45.7 25 0.00054 36.0 4.2 87 290-380 312-404 (425)
88 PF05686 Glyco_transf_90: Glyc 40.9 81 0.0018 32.7 7.0 133 244-378 154-297 (395)
89 PRK15179 Vi polysaccharide bio 38.9 63 0.0014 36.1 6.2 92 290-386 584-682 (694)
90 COG0297 GlgA Glycogen synthase 37.3 1.1E+02 0.0023 32.8 7.3 97 290-391 361-471 (487)
91 PF03032 Brevenin: Brevenin/es 37.2 21 0.00046 25.6 1.4 20 17-36 1-20 (46)
92 PLN03063 alpha,alpha-trehalose 35.3 93 0.002 35.4 6.9 84 289-377 367-457 (797)
93 PRK14333 (dimethylallyl)adenos 34.6 47 0.001 34.8 4.2 46 89-145 7-53 (448)
94 PF03016 Exostosin: Exostosin 34.0 22 0.00047 34.4 1.4 13 86-98 2-14 (302)
95 PF03823 Neurokinin_B: Neuroki 33.6 35 0.00075 25.5 2.0 15 19-33 1-15 (59)
96 COG0707 MurG UDP-N-acetylgluco 33.0 1.4E+02 0.003 30.6 7.1 81 290-378 245-338 (357)
97 PRK00025 lpxB lipid-A-disaccha 32.7 44 0.00096 33.4 3.5 86 290-382 254-359 (380)
98 PRK14862 rimO ribosomal protei 31.8 60 0.0013 34.0 4.4 47 85-142 4-51 (440)
99 PRK14335 (dimethylallyl)adenos 31.2 61 0.0013 34.1 4.3 37 108-145 10-47 (455)
100 KOG3185 Translation initiation 29.3 44 0.00096 31.2 2.5 32 297-328 20-51 (245)
101 PRK14334 (dimethylallyl)adenos 29.0 72 0.0016 33.4 4.4 45 90-145 2-47 (440)
102 PRK14340 (dimethylallyl)adenos 28.4 71 0.0015 33.6 4.3 45 90-145 8-53 (445)
103 PRK14331 (dimethylallyl)adenos 27.8 78 0.0017 33.1 4.4 45 90-145 2-47 (437)
104 PRK14338 (dimethylallyl)adenos 27.4 78 0.0017 33.4 4.3 46 89-145 21-67 (459)
105 PRK14332 (dimethylallyl)adenos 25.7 95 0.0021 32.7 4.6 48 87-145 9-57 (449)
106 cd02133 PA_C5a_like PA_C5a_lik 25.4 1.8E+02 0.004 25.2 5.7 73 290-362 40-114 (143)
107 PRK14328 (dimethylallyl)adenos 25.1 87 0.0019 32.7 4.2 45 90-145 3-48 (439)
108 COG0621 MiaB 2-methylthioadeni 24.6 1.1E+02 0.0024 32.3 4.8 37 108-145 12-50 (437)
109 PRK14336 (dimethylallyl)adenos 24.3 96 0.0021 32.3 4.3 45 90-145 3-48 (418)
110 PLN02275 transferase, transfer 23.9 1.4E+02 0.003 30.0 5.3 41 288-329 297-340 (371)
111 TIGR01578 MiaB-like-B MiaB-lik 23.7 95 0.0021 32.3 4.1 37 108-145 9-46 (420)
112 COG2355 Zn-dependent dipeptida 23.5 39 0.00085 34.0 1.2 71 305-375 145-215 (313)
113 PF11440 AGT: DNA alpha-glucos 23.3 1.4E+02 0.0029 30.0 4.7 75 289-363 265-350 (355)
114 PF15024 Glyco_transf_18: Glyc 22.8 1.8E+02 0.004 31.6 6.1 45 287-334 331-375 (559)
115 TIGR00089 RNA modification enz 22.4 1.1E+02 0.0023 31.9 4.2 36 108-144 9-45 (429)
116 TIGR01125 MiaB-like tRNA modif 21.4 1.1E+02 0.0024 31.8 4.1 36 108-144 9-45 (430)
117 PRK14329 (dimethylallyl)adenos 21.1 1.3E+02 0.0029 31.7 4.7 46 89-145 24-70 (467)
118 PRK14337 (dimethylallyl)adenos 20.5 1.3E+02 0.0028 31.5 4.4 46 89-145 4-49 (446)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=6.2e-63 Score=513.20 Aligned_cols=345 Identities=37% Similarity=0.676 Sum_probs=284.1
Q ss_pred CCCCceeeecChhhhhhhH--------------------HHhhCCCeeeEecCCCCCccccCCccccCCchhHHHHHHHH
Q 015235 64 YSDLGSDVFHSPSVFHLNY--------------------LEMVTNFKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNI 123 (411)
Q Consensus 64 ~~~~~~~vY~~p~~f~~~y--------------------~~~~~~~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L 123 (411)
|.+.++|+|++|+.|+.+. ..|+..+|+|+|.+|+.+.++..+++.++||++|++||++|
T Consensus 70 ~~~~~v~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~E~~~~~~~ 149 (464)
T KOG1021|consen 70 CAGASVYVYNLPSGFDVSLLLFHKQIPTSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTDQYASEGIFHNRM 149 (464)
T ss_pred ccCcceeeeccchhhhhhhhccCccccccCcchhhhhhhhhhcccCceEEecCCCCccccCCCcccccchhHHHHHHHHH
Confidence 6678999999999998743 34456689999999966655555667899999999999999
Q ss_pred h--hCCCcCCCcCCccEEEEecccccccCCC------CCchhhhHHHHHHHHHHHhcCccccccCCCCeEEEeecCCCcc
Q 015235 124 R--ESRFLTHDPDRAHLFFIPISCHKMRGKG------TSYENMTVIVKDYVDSLINKYPYWNRTLGADHFFVTCHDVGVR 195 (411)
Q Consensus 124 ~--~S~~~T~dP~eA~lFyvP~~~~~~~~~~------~~~~n~~~~~~~~v~~ll~~~PyWnR~~G~DHf~v~~~D~g~~ 195 (411)
+ .++|||.||+|||+|||||+..+..... ....+....+++++..+++++|||||++|+|||||++|||+..
T Consensus 150 ~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~ 229 (464)
T KOG1021|consen 150 LRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDERVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDF 229 (464)
T ss_pred hcccCceecCChhhCcEEEEcceeeEehhhhcccCCcccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchhe
Confidence 5 7899999999999999999987654211 1223556788999998899999999999999999999999976
Q ss_pred cCCCchhhhcceEEEeec-CCCCCccccC-CCCCCCccccCCcC-CC-----CCCCCCccceeeeeccC-CChHHHHHHH
Q 015235 196 ATEGVPFLIKNAIRVVCS-PSYDVAFIPH-KDVALPQVLQPFAL-PR-----GGRDVENRTVLGFWAGH-RNSKIRVILA 266 (411)
Q Consensus 196 ~~~~~p~~~~nai~~~~~-~~~~~~frp~-kDV~iP~~~~~~~~-p~-----~~~~~~~R~~L~fFaG~-~~~~vR~~L~ 266 (411)
..........+.|..+++ +....++.+. +||+||++..+... +. ++....+|++|+||+|+ .+|.+|+.|.
T Consensus 230 ~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~ 309 (464)
T KOG1021|consen 230 RRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPAGGQIRSILL 309 (464)
T ss_pred eeccchhhHHHHHHhhCCcceeecccccCCCcccCCCccCcCccCccccccccCCCCCCCceEEEEeccccCCcHHHHHH
Confidence 542222223344444554 3455678888 99999997533221 11 23345799999999999 8999999999
Q ss_pred HHhhcCCc----ccccccccccCCCchhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCC
Q 015235 267 RVWENDTE----LDISNNRINRAIGPLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWR 342 (411)
Q Consensus 267 ~~~~~~~~----~~i~~~~~~~~~~~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~ 342 (411)
++|+++++ +.+..+.. .|.+...|.+.|++|+|||||+|++++|+|+||||.+|||||||+|++.+||++++||+
T Consensus 310 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~ 388 (464)
T KOG1021|consen 310 DLWKKDPDTEVFVNCPRGKV-SCDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWT 388 (464)
T ss_pred HHhhcCcCccccccCCCCcc-ccCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccce
Confidence 99998332 22222211 25677899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcccCHHHH-HHHHhcCCHHHHHHHHHHHHH-hhccceecC--CCCCcCHHHHHHHHHHHHhhhcc
Q 015235 343 KFAVILNERDVYQL-KQILKNISDAEFVSLHNNLVK-VQKHFQWNS--PPVRFDAFHMVMYELWLRRHVIK 409 (411)
Q Consensus 343 ~fsV~v~e~~~~~l-~~~L~~i~~~~~~~mq~~l~~-~~~~f~y~~--~~~~~DAf~~il~~l~~Rr~~~~ 409 (411)
+|||+|++++++++ +++|.+++.+++.+||+++.+ +.+||+++. ++..+|||||+++++|.|+++.+
T Consensus 389 ~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~ 459 (464)
T KOG1021|consen 389 EFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLR 459 (464)
T ss_pred EEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccc
Confidence 99999999999998 999999999999999999994 999999998 78889999999999999999876
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=3.9e-56 Score=435.38 Aligned_cols=284 Identities=33% Similarity=0.569 Sum_probs=220.8
Q ss_pred CCCCceeeecChhhhhhhHHHhhCCCeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCCcCCCcCCccEEEEec
Q 015235 64 YSDLGSDVFHSPSVFHLNYLEMVTNFKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFLTHDPDRAHLFFIPI 143 (411)
Q Consensus 64 ~~~~~~~vY~~p~~f~~~y~~~~~~~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~~T~dP~eA~lFyvP~ 143 (411)
+.+++||||++|+.||.+... .......+...+++|+.|.+|+++|++|+++|.||+|||+||||+
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~--------------~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~ 67 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLD--------------PREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPF 67 (302)
T ss_pred CCCCEEEEEeCCcccccccee--------------ccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEc
Confidence 455677777777777666550 011122333468999999999999999999999999999999999
Q ss_pred cccccc----CCCCCchhhhHHHHHHHHHHHhcCccccccCCCCeEEEeecCCCcccCCCchhhhcceEEEee-cC-CCC
Q 015235 144 SCHKMR----GKGTSYENMTVIVKDYVDSLINKYPYWNRTLGADHFFVTCHDVGVRATEGVPFLIKNAIRVVC-SP-SYD 217 (411)
Q Consensus 144 ~~~~~~----~~~~~~~n~~~~~~~~v~~ll~~~PyWnR~~G~DHf~v~~~D~g~~~~~~~p~~~~nai~~~~-~~-~~~ 217 (411)
++.+.. +.. ..........+++.++++++|||||++|+||||+++||+|.+.....+.+..+++.++. .+ ...
T Consensus 68 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (302)
T PF03016_consen 68 YSSCYFHHWWGSP-NSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSS 146 (302)
T ss_pred ccccccccccCCc-cchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCc
Confidence 987651 111 11122345677788889999999999999999999999888766545555666666652 22 245
Q ss_pred CccccCCCCCCCccccCCcCCC----CCCCCCccceeeeeccCCC-------hHHHHHHHHHhhcCCcccccccccccCC
Q 015235 218 VAFIPHKDVALPQVLQPFALPR----GGRDVENRTVLGFWAGHRN-------SKIRVILARVWENDTELDISNNRINRAI 286 (411)
Q Consensus 218 ~~frp~kDV~iP~~~~~~~~p~----~~~~~~~R~~L~fFaG~~~-------~~vR~~L~~~~~~~~~~~i~~~~~~~~~ 286 (411)
.+|+|++||++|++........ ......+|++|++|+|... +.+|..|.+.|++.++..+.... ..+.
T Consensus 147 ~~~~~~~Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~-~~~~ 225 (302)
T PF03016_consen 147 SCFRPGFDIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDPDFRCSDGS-ETCP 225 (302)
T ss_pred CcccCCCCeeccccccccccCCccccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCCcceeeecc-cccc
Confidence 7899999999998754332111 1224578999999999853 46999999999887765543211 1234
Q ss_pred CchhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 287 GPLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 287 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
+..+|.+.|++|||||||+|+++++.||+|||.+|||||||+|+++|||+++|||++|+|+|+++++++|+++|++|
T Consensus 226 ~~~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 226 SPSEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred cchHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-26 Score=235.06 Aligned_cols=291 Identities=20% Similarity=0.278 Sum_probs=201.9
Q ss_pred CCCeeeEecCCCCCccccCCccccCCchhHHH---HHHHHhhCCCcCCCcCCccEEEEecccccccCCCCCchhhhHHHH
Q 015235 87 TNFKIYIYPDGDPNTFYQTPRKLTGKYASEGY---FFQNIRESRFLTHDPDRAHLFFIPISCHKMRGKGTSYENMTVIVK 163 (411)
Q Consensus 87 ~~~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~---f~~~L~~S~~~T~dP~eA~lFyvP~~~~~~~~~~~~~~n~~~~~~ 163 (411)
..|.||||+..... .+++-.|+. |-+.+....|.|.||+.||++++-+... ..+.. + + .
T Consensus 194 SgfPVYvyd~D~~~---------~G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge~--q~P~~---l-~---p 255 (907)
T KOG2264|consen 194 SGFPVYVYDSDIIT---------SGQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGEI--QSPVV---L-T---P 255 (907)
T ss_pred CCceeEEeccceee---------cccchHHHHHHHHHHhcccceeEeeCCCccEEEEEEeccc--cCCCc---C-C---h
Confidence 45999999866421 344444432 5556667889999999999998866532 11110 0 0 1
Q ss_pred HHHHHHHhcCccccccCCCCeEEEeecCCCc--ccCCCchhhhcceEEEeecCCCCCccccCCCCCCCccccCCcCC---
Q 015235 164 DYVDSLINKYPYWNRTLGADHFFVTCHDVGV--RATEGVPFLIKNAIRVVCSPSYDVAFIPHKDVALPQVLQPFALP--- 238 (411)
Q Consensus 164 ~~v~~ll~~~PyWnR~~G~DHf~v~~~D~g~--~~~~~~p~~~~nai~~~~~~~~~~~frp~kDV~iP~~~~~~~~p--- 238 (411)
..+++ +-++|||.. +|+||++++...-.- ..+. ...+++||.++++ -|...||||+|..+|+...+...+
T Consensus 256 ~elek-lyslp~w~~-dg~Nhvl~Nl~r~s~~~n~ly--n~~t~raivvQss-f~~~q~RpgfDl~V~pv~h~~~e~~~~ 330 (907)
T KOG2264|consen 256 AELEK-LYSLPHWRT-DGFNHVLFNLGRPSDTQNLLY--NFQTGRAIVVQSS-FYTVQIRPGFDLPVDPVNHIAVEKNFV 330 (907)
T ss_pred Hhhhh-hhcCccccC-CCcceEEEEccCcccccccee--EeccCceEEEeec-ceeeeeccCCCcccCcccccccCccce
Confidence 12334 567899964 899999998643211 1111 1235677777654 367789999999998764332111
Q ss_pred -CCCCCCCccceeeeeccCCC---h---HHHHHHHHHhhcCC--------c---ccccc----------cccccCCCchh
Q 015235 239 -RGGRDVENRTVLGFWAGHRN---S---KIRVILARVWENDT--------E---LDISN----------NRINRAIGPLV 290 (411)
Q Consensus 239 -~~~~~~~~R~~L~fFaG~~~---~---~vR~~L~~~~~~~~--------~---~~i~~----------~~~~~~~~~~~ 290 (411)
....-+-+|++|+.|.|... + ..+. .......++ . +.|+. ..+..|.....
T Consensus 331 e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~a-F~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg~~~~ 409 (907)
T KOG2264|consen 331 ELTPLVPFQRKYLITLQGKIESDNSSLNEFSA-FSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCGERER 409 (907)
T ss_pred ecCcccchhhheeEEEEeeecccccccchhhh-hHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhhccchHH
Confidence 01123568999999999652 1 1232 222222211 1 12220 12234666677
Q ss_pred HHhhccCceEEee-cCCCCCC-----chhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcCC
Q 015235 291 YQRRFYKTKFCIC-PGGSQVN-----SARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNIS 364 (411)
Q Consensus 291 y~~~~~~S~FCL~-p~G~~~~-----s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i~ 364 (411)
-.++++.|+|||+ |+|++-- -.|++||+..||||||+++...|||.|.|||.+.+.++|..++.+++-+|+++.
T Consensus 410 RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~tE~HFllrs~~ 489 (907)
T KOG2264|consen 410 RRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARLTEAHFLLRSFE 489 (907)
T ss_pred HHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCccccchHHHHHHhcc
Confidence 8899999999996 7888632 379999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccceecCCCCCcCHHHHHHHHHHHHh
Q 015235 365 DAEFVSLHNNLVKVQKHFQWNSPPVRFDAFHMVMYELWLRR 405 (411)
Q Consensus 365 ~~~~~~mq~~l~~~~~~f~y~~~~~~~DAf~~il~~l~~Rr 405 (411)
+.++.+||++++-+|+.++ ....-.+++++..|+.|-
T Consensus 490 dsDll~mRRqGRl~wEtYl----s~~~~~~~tvlA~lR~rl 526 (907)
T KOG2264|consen 490 DSDLLEMRRQGRLFWETYL----SDRHLLARTVLAALRYRL 526 (907)
T ss_pred hhhHHHHHhhhhhhHHHHh----hHHHHHHHHHHHHHHHhh
Confidence 9999999999988877754 234567888888888774
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.88 E-value=4.7e-22 Score=201.58 Aligned_cols=276 Identities=20% Similarity=0.156 Sum_probs=186.8
Q ss_pred hhCCCeeeEecCCCCCccccCCccccCCchhHHH-HHHHHhhCCCcCCCcCCccEEEEecccccccCCCCCchhhhHHHH
Q 015235 85 MVTNFKIYIYPDGDPNTFYQTPRKLTGKYASEGY-FFQNIRESRFLTHDPDRAHLFFIPISCHKMRGKGTSYENMTVIVK 163 (411)
Q Consensus 85 ~~~~~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~-f~~~L~~S~~~T~dP~eA~lFyvP~~~~~~~~~~~~~~n~~~~~~ 163 (411)
.....|||+|..++... +........++.|++ +.+++..|.++|.|+++||+|....+.. |++.+..
T Consensus 95 ~~~~~KvyIy~l~~~vd--~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~Ps~d~l----------nQn~l~~ 162 (691)
T KOG1022|consen 95 LFFETKVYIYMLGDIVD--AKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLFMPSSDEL----------NQNPLSW 162 (691)
T ss_pred cccccceeEEehhhhhh--hhcccccccccHHHHHHHHHHHhccceecCCCceEEEecchhhh----------ccCcchH
Confidence 34568999999986321 111123455677766 8888889999999999999999877753 2222223
Q ss_pred HHHHHHHhcCccccccCCCCeEEEeecCCCcccCCCc-hhhhcceEEEeecCCCCCccccCCCCCCCccccCCcCCCCCC
Q 015235 164 DYVDSLINKYPYWNRTLGADHFFVTCHDVGVRATEGV-PFLIKNAIRVVCSPSYDVAFIPHKDVALPQVLQPFALPRGGR 242 (411)
Q Consensus 164 ~~v~~ll~~~PyWnR~~G~DHf~v~~~D~g~~~~~~~-p~~~~nai~~~~~~~~~~~frp~kDV~iP~~~~~~~~p~~~~ 242 (411)
+.-..++++.-.|.| |.||.+++.-.-|.....+. .....+++.. .++--...||+|+||.+|.+.+ ...-....
T Consensus 163 kl~~~ala~l~~wdr--g~nH~~fnmLpGg~p~yntaldv~~d~a~~~-gggf~tW~yr~g~dv~ipv~Sp-~~v~~~~~ 238 (691)
T KOG1022|consen 163 KLEKVALAKLLVWDR--GVNHEGFNMLPGGDPTYNTALDVGQDEAWYS-GGGFGTWKYRKGNDVYIPVRSP-GNVGRAFL 238 (691)
T ss_pred HHHHHHHhcccchhc--ccceeeEeeccCCCCCccccccCCcceeEEe-cCCcCcccccCCCccccccccc-cccCcccc
Confidence 333445788889999 99999998765553321111 0112334332 2221223589999999998632 21000001
Q ss_pred CCCccceeeeecc-CCChHHHHHHHHHhhcCCc--ccc------cccccccCCC--chhHHhhccCceEEeecCCCCCCc
Q 015235 243 DVENRTVLGFWAG-HRNSKIRVILARVWENDTE--LDI------SNNRINRAIG--PLVYQRRFYKTKFCICPGGSQVNS 311 (411)
Q Consensus 243 ~~~~R~~L~fFaG-~~~~~vR~~L~~~~~~~~~--~~i------~~~~~~~~~~--~~~y~~~~~~S~FCL~p~G~~~~s 311 (411)
....|..+.--+| +.+.++|..|.+......+ +.+ +-+-.+.+.. ..+|.+.+...+||+.-+|.+.+.
T Consensus 239 ~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~fc~~~R~~r~gq 318 (691)
T KOG1022|consen 239 YDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGFCDGDRVTRGGQ 318 (691)
T ss_pred CCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccccceeeeEeccccccCCc
Confidence 1234544433333 2345677777766443221 211 1111122222 356999999999999999988889
Q ss_pred hhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcCCHHHHHHHHHHHH
Q 015235 312 ARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNISDAEFVSLHNNLV 376 (411)
Q Consensus 312 ~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i~~~~~~~mq~~l~ 376 (411)
.-+.+-+.+||+|||..|.+.+||++|+||...||+++|..+.++.+.|++++...+.+||.+..
T Consensus 319 ~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r~~ 383 (691)
T KOG1022|consen 319 FHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLRRI 383 (691)
T ss_pred cceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998887754
No 5
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.69 E-value=0.005 Score=59.84 Aligned_cols=94 Identities=10% Similarity=0.140 Sum_probs=69.2
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.|+.+..++.|.+....+..++|||++|| |||.++.-- ..+++.=....+.++..+..++.+.+..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4567889999999999988777889999999998 788777432 33444434566777777777666655554 467
Q ss_pred HHHHHHHHHHHhhccceec
Q 015235 367 EFVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f~y~ 385 (411)
+..+|.++..+..+.+.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 335 LRRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHHhhcCHH
Confidence 7888888887766666554
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.63 E-value=0.0058 Score=58.43 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=70.8
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.++.+.|..+.+.++|.-.+..+..++||+.+|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .++
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE 343 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH
Confidence 5678889999999999866667889999999997 6777765 3345556656778888888888777777664 456
Q ss_pred HHHHHHHHHH-Hhhccceec
Q 015235 367 EFVSLHNNLV-KVQKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~-~~~~~f~y~ 385 (411)
...+|.++.+ .+.+.+.|.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 344 LRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 6778888776 566666554
No 7
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.54 E-value=0.0039 Score=55.29 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=56.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcCCH--H
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNISD--A 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i~~--~ 366 (411)
.+..+.++.+.+.++|......+..+.|||.+|| |||+++. -.+.+.+.=..-.+.++..++.++.+.+..+-. +
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 4677889999999999998888999999999999 6667762 222333322224566777788887777776643 4
Q ss_pred HHHHHHHHHH
Q 015235 367 EFVSLHNNLV 376 (411)
Q Consensus 367 ~~~~mq~~l~ 376 (411)
....|.++.+
T Consensus 161 ~~~~l~~~~~ 170 (172)
T PF00534_consen 161 LRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4555555543
No 8
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=96.50 E-value=0.0056 Score=62.13 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=67.2
Q ss_pred CCCccccCCCCCCCccccCCcC-CCC----CCCC-CccceeeeeccCCC-hHHHHHHHHHhhcCCccccccccc--ccCC
Q 015235 216 YDVAFIPHKDVALPQVLQPFAL-PRG----GRDV-ENRTVLGFWAGHRN-SKIRVILARVWENDTELDISNNRI--NRAI 286 (411)
Q Consensus 216 ~~~~frp~kDV~iP~~~~~~~~-p~~----~~~~-~~R~~L~fFaG~~~-~~vR~~L~~~~~~~~~~~i~~~~~--~~~~ 286 (411)
+.-+||..-||.+|+....... ... .... .+++..++++.+.+ ..-|..+.+.+...-.++..+ +| +.+.
T Consensus 138 ~TMTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~~~vd~yG-~c~~~~~~ 216 (349)
T PF00852_consen 138 WTMTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKYIPVDSYG-KCGNNNPC 216 (349)
T ss_dssp -----------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTTS-EEE-S-STT--SSS
T ss_pred cccccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhhcCeEccC-CCCCCCCc
Confidence 3446788889999864211111 111 0112 33345566666653 234888888777654454432 33 1122
Q ss_pred CchhHHhhccCceEEeecC---CCCCCchhHHHHHhhCceeEEEe--Cc---eecCCCCCCCCCcEEEEEcccCHHHHHH
Q 015235 287 GPLVYQRRFYKTKFCICPG---GSQVNSARIADSIHYGCVPVILS--NY---YDLPFNDILDWRKFAVILNERDVYQLKQ 358 (411)
Q Consensus 287 ~~~~y~~~~~~S~FCL~p~---G~~~~s~rl~dai~~GCIPVii~--d~---~~lPf~~~idw~~fsV~v~e~~~~~l~~ 358 (411)
....+.+.+++-||.|+.. ..+..+--+++|+.+|||||+++ .. -.+|=...|+.++|. ...+|.+
T Consensus 217 ~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df~------s~~~La~ 290 (349)
T PF00852_consen 217 PRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDFK------SPKELAD 290 (349)
T ss_dssp --S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGSS------SHHHHHH
T ss_pred ccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcCC------CHHHHHH
Confidence 2334788999999999864 33456889999999999999999 32 226657778777763 5677888
Q ss_pred HHhcCC
Q 015235 359 ILKNIS 364 (411)
Q Consensus 359 ~L~~i~ 364 (411)
.|+.+.
T Consensus 291 yl~~l~ 296 (349)
T PF00852_consen 291 YLKYLD 296 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888874
No 9
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.44 E-value=0.0087 Score=58.32 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=68.8
Q ss_pred hhHHhhccCceEEeecCCCC--CCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--C
Q 015235 289 LVYQRRFYKTKFCICPGGSQ--VNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--S 364 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~--~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~ 364 (411)
.+..+.|+.+.+++.|...+ ..+..+.|||.+|+ |||.+|.-- .+++.+ ..-.+.++..+..++.+.|..+ .
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 45778999999999998777 77888999999999 999887432 333333 3445667777777777766654 3
Q ss_pred HHHHHHHHHHHHHhhccceecC
Q 015235 365 DAEFVSLHNNLVKVQKHFQWNS 386 (411)
Q Consensus 365 ~~~~~~mq~~l~~~~~~f~y~~ 386 (411)
+++..+|+++.++..+.|.|..
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~ 356 (366)
T cd03822 335 PELAQALRARAREYARAMSWER 356 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHHH
Confidence 4678889888887766666653
No 10
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=96.21 E-value=0.013 Score=55.91 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=69.0
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.|+++.+++.|...+.....++|||.+||.+ |.++....+ +++++-....+.++..|+.++.+.+..+ .++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pv-i~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPV-ISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCE-EEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 456778999999999987766778899999999864 555532222 2334444567778888887777776665 577
Q ss_pred HHHHHHHHHHHhhccceec
Q 015235 367 EFVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f~y~ 385 (411)
...+|.++..+..+.|.|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~ 340 (348)
T cd03820 322 LRKRMGANARESAERFSIE 340 (348)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 7888988887777777665
No 11
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.95 E-value=0.021 Score=55.33 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=65.5
Q ss_pred hhHHhhccCceEEeecCCCCCC-----chhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 289 LVYQRRFYKTKFCICPGGSQVN-----SARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~-----s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
.++.+.+..+.++++|...+.. ...++||+.+|| |||.++.-.. .+.+.=....+.++..+..++.+.+..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGES--AELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCc--hhhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 4677889999999999776543 556899999996 8887764322 2222222556677777888777777666
Q ss_pred --CHHHHHHHHHHHHHhh-ccceec
Q 015235 364 --SDAEFVSLHNNLVKVQ-KHFQWN 385 (411)
Q Consensus 364 --~~~~~~~mq~~l~~~~-~~f~y~ 385 (411)
.+++..+|.++..+.. ++|.|.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHH
Confidence 6777888888776544 466654
No 12
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.79 E-value=0.027 Score=55.26 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=68.2
Q ss_pred hhHHhhccCceEEeecC-CCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHh-cC--C
Q 015235 289 LVYQRRFYKTKFCICPG-GSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILK-NI--S 364 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~-G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~-~i--~ 364 (411)
.+..+.|+.|..+++|. -.+.....++|||++|| |||.++. -+..+.+.-....+.++..+..++.+.+. .+ +
T Consensus 255 ~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 331 (355)
T cd03819 255 SDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSLL 331 (355)
T ss_pred ccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhC
Confidence 45778899999999987 44455678999999998 7777763 34456665565677788888888777663 32 5
Q ss_pred HHHHHHHHHHHHH-hhccceec
Q 015235 365 DAEFVSLHNNLVK-VQKHFQWN 385 (411)
Q Consensus 365 ~~~~~~mq~~l~~-~~~~f~y~ 385 (411)
+++..+|.++.++ +..+|.|.
T Consensus 332 ~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 332 PEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 7788888888765 45666554
No 13
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=95.74 E-value=0.022 Score=55.40 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=67.3
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc-C-CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN-I-SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~-i-~~~ 366 (411)
.+..+.+..+.+++.|.-....+..++||+.+|| |||.++.- ...+.+ .+..+.++..+..++.+.|.. + .++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 4567789999999999755555677999999996 77777642 233444 345667777788887777766 3 466
Q ss_pred HHHHHHHHHHHhhccceecC
Q 015235 367 EFVSLHNNLVKVQKHFQWNS 386 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f~y~~ 386 (411)
...+|.++.+++.+.+.|..
T Consensus 339 ~~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 339 LREELRERGLARAKRFSWEK 358 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 77888888877777777653
No 14
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.64 E-value=0.033 Score=55.12 Aligned_cols=94 Identities=12% Similarity=0.180 Sum_probs=68.2
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.|..+..++.|.-.+.....+.|||.+| +|||.++.- ...+++.-..-...++..|..++.+.+..+ .++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 356778999999999976666677899999999 788888753 234555444455667777877766655544 467
Q ss_pred HHHHHHHHHHHh-hccceec
Q 015235 367 EFVSLHNNLVKV-QKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~~-~~~f~y~ 385 (411)
...+|+++.++. .++|.|.
T Consensus 339 ~~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 339 LWQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 788898888775 6676654
No 15
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.56 E-value=0.042 Score=55.69 Aligned_cols=96 Identities=9% Similarity=0.132 Sum_probs=68.0
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.|+.+..++.|.=.+.....++|||++|| |||.++.- ...+.|.=....+.++..|..++.+.+..+ .++
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVG--GLPVAVADGETGLLVDGHDPADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCC--CcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH
Confidence 4567789999999988655556678999999996 88887742 223445434556677877877766555443 456
Q ss_pred HHHHHHHHHHHhhccceecCC
Q 015235 367 EFVSLHNNLVKVQKHFQWNSP 387 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f~y~~~ 387 (411)
...+|.++..+..++|.|...
T Consensus 371 ~~~~~~~~~~~~~~~fsw~~~ 391 (405)
T TIGR03449 371 TRIRMGAAAVEHAAGFSWAAT 391 (405)
T ss_pred HHHHHHHHHHHHHHhCCHHHH
Confidence 678888888877677777654
No 16
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.55 E-value=0.037 Score=57.87 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=74.6
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCC---CcEEEEEcccCHHHHHHHHhcC--
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDW---RKFAVILNERDVYQLKQILKNI-- 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw---~~fsV~v~e~~~~~l~~~L~~i-- 363 (411)
.+..+.++.+..++.|...+..+.-++|||++| +|||.++.- ...++++= ....+.++..|..++.+.+..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 467788999999999988777788899999999 899988742 23344433 6777888888888777666554
Q ss_pred CHHHHHHHHHHHHHhhccceecCCCCC
Q 015235 364 SDAEFVSLHNNLVKVQKHFQWNSPPVR 390 (411)
Q Consensus 364 ~~~~~~~mq~~l~~~~~~f~y~~~~~~ 390 (411)
.++...+|.++.++..+.|.|.....+
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~~~a~~ 426 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWRAATRK 426 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467778888888877677777654333
No 17
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=95.52 E-value=0.04 Score=52.74 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=64.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.++.+.++++|......+..++||+.+|| |||.+|.-. ..+.+.=....+.++.++..++.+.+..+ .++
T Consensus 255 ~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 255 DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred ccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 3466788999999999877777889999999995 777776432 23444324456677877777776666654 456
Q ss_pred HHHHHHHHHHHh-hcccee
Q 015235 367 EFVSLHNNLVKV-QKHFQW 384 (411)
Q Consensus 367 ~~~~mq~~l~~~-~~~f~y 384 (411)
...+|.++.++. .++|.|
T Consensus 332 ~~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 332 LRARMGQAARKRAEEEFDE 350 (359)
T ss_pred HHHHHHHHHHHHHHHhcCH
Confidence 677777776554 566544
No 18
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.35 E-value=0.037 Score=55.19 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=67.5
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.+..+..+++|.-.......++|||.+| +|||.++.- ...+.|.=....+.++..+..++.+.+..+ .++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACG-LPVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPA 370 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcC-CCEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHH
Confidence 346677889999999977666677899999999 599988742 334445444566777877777766665554 467
Q ss_pred HHHHHHHHHHHhh-ccceecC
Q 015235 367 EFVSLHNNLVKVQ-KHFQWNS 386 (411)
Q Consensus 367 ~~~~mq~~l~~~~-~~f~y~~ 386 (411)
+..+|.++.++.. ++|.|..
T Consensus 371 ~~~~~~~~a~~~~~~~~s~~~ 391 (398)
T cd03800 371 LRRRLSRAGLRRARARYTWER 391 (398)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 7888888876644 7776653
No 19
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=95.34 E-value=0.041 Score=53.18 Aligned_cols=92 Identities=14% Similarity=0.346 Sum_probs=60.4
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.+..+.++++|.-.+..+..++|||.+|| |||.++.- ...+.+.- ...+.++.+ ..++.+.+..+ .++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHH
Confidence 3566788999999999876767888999999996 88877642 22333322 344444443 35444444443 236
Q ss_pred HHHHHHHHHHHh-hccceec
Q 015235 367 EFVSLHNNLVKV-QKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~~-~~~f~y~ 385 (411)
+..+|.++.++. .++|.|.
T Consensus 348 ~~~~~~~~~~~~~~~~~s~~ 367 (375)
T cd03821 348 RLKAMGENGRALVEERFSWT 367 (375)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 778888877765 7777664
No 20
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=95.18 E-value=0.064 Score=54.50 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=66.4
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.++.+.|+.|..++.|.-....+..++|||++|| |||.+|. -+..+++.-..-.+.++..|..++.+.+..+ .++
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~--~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDT--APVREVITDGENGLLVDFFDPDALAAAVIELLDDPA 368 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCC--CCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 4567788899999888755555668999999998 8887764 2455666655667778888877766655543 356
Q ss_pred HHHHHHHHHHH-hhccceec
Q 015235 367 EFVSLHNNLVK-VQKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~-~~~~f~y~ 385 (411)
+..+|.++.++ +.++|.|.
T Consensus 369 ~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 369 RRARLRRAARRTALRYDLLS 388 (396)
T ss_pred HHHHHHHHHHHHHHHhccHH
Confidence 67788777765 44556654
No 21
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.14 E-value=0.088 Score=52.01 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=65.9
Q ss_pred hhHHhhccCceEEeecCCC------CCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc
Q 015235 289 LVYQRRFYKTKFCICPGGS------QVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~------~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~ 362 (411)
.+..+.++.+...++|.-. ......++|||.+|| |||.+|.-- ..+.+.=....+.++..|..++.+.+..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 4566788899988887532 234678999999996 999888633 3344444566778888888877766655
Q ss_pred C--CHHHHHHHHHHHHH-hhccceecC
Q 015235 363 I--SDAEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 363 i--~~~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
+ .++...+|.++.++ +.++|.|..
T Consensus 333 l~~~~~~~~~~~~~a~~~~~~~~s~~~ 359 (367)
T cd05844 333 LLADPDLRARMGAAGRRRVEERFDLRR 359 (367)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 4 35567788777665 556777653
No 22
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=95.07 E-value=0.038 Score=53.08 Aligned_cols=94 Identities=12% Similarity=0.182 Sum_probs=62.2
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC-CHHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI-SDAE 367 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i-~~~~ 367 (411)
.+..+.+.++.++++|...+..+..++||+.+|| |||.++.-- ..+.+.-....+.+...+..++.+.|..+ .+.+
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPW 346 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcH
Confidence 4567889999999999877777889999999998 677766421 22344444445677887877766666554 2222
Q ss_pred HHHHHHHHHHhhccceec
Q 015235 368 FVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 368 ~~~mq~~l~~~~~~f~y~ 385 (411)
....++....+.+.|.|.
T Consensus 347 ~~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 347 LRLGRAARRRVAERFSWE 364 (377)
T ss_pred HHHhHHHHHHHHHHhhHH
Confidence 233444455566666654
No 23
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.06 E-value=0.059 Score=53.93 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.++.+..+++|.-.+....-++|||.+|+ |||.+|.- ...+++.-......++..|..++.+.|..+ .++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3567788999999988766666788999999996 99998842 234556555667788888887777666554 355
Q ss_pred HHHHHHHHHHH-hhccceecC
Q 015235 367 EFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 367 ~~~~mq~~l~~-~~~~f~y~~ 386 (411)
+..+|.++.++ +.++|.|..
T Consensus 341 ~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 341 ARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 56667666554 456666554
No 24
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.02 E-value=0.063 Score=51.88 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=62.4
Q ss_pred hhHHhhccCceEEeecCC-CCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CH
Q 015235 289 LVYQRRFYKTKFCICPGG-SQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SD 365 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G-~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~ 365 (411)
.+..+.++.+..+++|.- .+..+..++|||.+| +|||.++.- ...+.++.....+.++..|..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 567778999999999964 455677899999999 677777632 234556666667888888877766665554 46
Q ss_pred HHHHHHHHHHHHh
Q 015235 366 AEFVSLHNNLVKV 378 (411)
Q Consensus 366 ~~~~~mq~~l~~~ 378 (411)
+...+|+++.++.
T Consensus 331 ~~~~~~~~~~~~~ 343 (359)
T cd03823 331 DLLERLRAGIEPP 343 (359)
T ss_pred HHHHHHHHhHHHh
Confidence 6677777776543
No 25
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=94.89 E-value=0.055 Score=52.08 Aligned_cols=93 Identities=11% Similarity=0.121 Sum_probs=62.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.++.+..+++|...+..+..++||+.+|| |||.++.-. ..+.++= ..+.++..+..++.+.+..+ .++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPA 334 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChH
Confidence 3466789999999999887777889999999996 788776321 1222221 45667777776666655554 245
Q ss_pred HHHHHHHHHHH-hhccceecC
Q 015235 367 EFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 367 ~~~~mq~~l~~-~~~~f~y~~ 386 (411)
+..+|.++..+ +.+.|.|..
T Consensus 335 ~~~~~~~~~~~~~~~~~s~~~ 355 (365)
T cd03807 335 LRQALGEAARERIEENFSIEA 355 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 66777766654 556676653
No 26
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=94.75 E-value=0.08 Score=53.00 Aligned_cols=95 Identities=12% Similarity=0.164 Sum_probs=64.9
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCH------HHHHHHHhc
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDV------YQLKQILKN 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~------~~l~~~L~~ 362 (411)
.+..+.+..|..++.|.-......-++||+.+|| |||.+|.-- ..+++.=....+.++..+. ..+.+.|..
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 4567789999999999766666778899999998 888887422 2344433344566666655 555555544
Q ss_pred C--CHHHHHHHHHHHHH-hhccceecC
Q 015235 363 I--SDAEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 363 i--~~~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
+ .+++..+|.++.++ +.+.|.|..
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~~ 375 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWGS 375 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3 46677888877665 556677653
No 27
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=94.73 E-value=0.055 Score=54.10 Aligned_cols=88 Identities=19% Similarity=0.341 Sum_probs=63.7
Q ss_pred hhHHhhccCceEEeecCCCC-----------CCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQ-----------VNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLK 357 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~-----------~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~ 357 (411)
.+..+.++. .|+|++.+++ ..-..++++|++| +|||+++.-.++ +.|.=....+.++ ++.++.
T Consensus 218 eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G-~PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~ 291 (333)
T PRK09814 218 EELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG-LPVIVWSKAAIA--DFIVENGLGFVVD--SLEELP 291 (333)
T ss_pred HHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCC-CCEEECCCccHH--HHHHhCCceEEeC--CHHHHH
Confidence 344555555 8989887661 1223588888888 699998753332 4454456666666 677899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhccc
Q 015235 358 QILKNISDAEFVSLHNNLVKVQKHF 382 (411)
Q Consensus 358 ~~L~~i~~~~~~~mq~~l~~~~~~f 382 (411)
+.|+.++++++.+|+++.+++.+.+
T Consensus 292 ~~l~~~~~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 292 EIIDNITEEEYQEMVENVKKISKLL 316 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988775
No 28
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.38 E-value=0.16 Score=49.15 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=58.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
.+..+.+..+.+.++|......+..++|||.+|+ |||.++.- ...+.+.=..-.+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 4577889999999999877767789999999985 55666532 23344443345556666553 444333333 245
Q ss_pred HHHHHHHHHHHhhccc
Q 015235 367 EFVSLHNNLVKVQKHF 382 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f 382 (411)
...+|+++.++..+++
T Consensus 346 ~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 346 LRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5578888877765554
No 29
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=94.12 E-value=0.14 Score=49.96 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=59.7
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC---CHH
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI---SDA 366 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i---~~~ 366 (411)
+..+.|+.+...+.|.........++|||.+|| |||.+|.- ...+.+.= ....++..+..++.+.+..+ +++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~ 329 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVGD--SGLIVPISDPEALANKIDEILKMSGE 329 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHH
Confidence 456778999999999877777888999999999 88887741 12233321 34455667776665555444 455
Q ss_pred HHHHHHHHHHHhhccceec
Q 015235 367 EFVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f~y~ 385 (411)
....|.++-..+.+.|.|.
T Consensus 330 ~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 330 ERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 5566666534456666554
No 30
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=93.97 E-value=0.18 Score=49.13 Aligned_cols=95 Identities=6% Similarity=0.090 Sum_probs=63.5
Q ss_pred hhHHhhccCceEEeecCCC------CCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc
Q 015235 289 LVYQRRFYKTKFCICPGGS------QVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~------~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~ 362 (411)
.+..+.++++.++++|... ......++||+.+||-.| .++. ....+.+.=..-...+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi-~~~~--~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVI-STDV--SGIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEE-ecCC--CCcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4567788999999998755 455788999999997554 4543 223444443445667777777766666555
Q ss_pred C--CHHHHHHHHHHHHH-hhccceecC
Q 015235 363 I--SDAEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 363 i--~~~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
+ .+++..+|.++.++ +..+|.|..
T Consensus 324 ~~~~~~~~~~~~~~a~~~~~~~~s~~~ 350 (355)
T cd03799 324 LLDDPELRREMGEAGRARVEEEFDIRK 350 (355)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4 35667788887765 456666543
No 31
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.94 E-value=0.18 Score=40.29 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=47.5
Q ss_pred EeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEc-ccCHHHHHHHHhcCCHHHHHHHHHHHHH-h
Q 015235 301 CICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILN-ERDVYQLKQILKNISDAEFVSLHNNLVK-V 378 (411)
Q Consensus 301 CL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~-e~~~~~l~~~L~~i~~~~~~~mq~~l~~-~ 378 (411)
||-|.-.+..+.|++|++++|+..|. .+. ..+.+.+++.+-.+.++ .+++.+....|.+ .+++.++|.++..+ +
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~-~~~--~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVIS-DDS--PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARERV 77 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEE-CCh--HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 34443333457899999999986544 333 22233455665566664 4444443334333 67788888888754 5
Q ss_pred hccceec
Q 015235 379 QKHFQWN 385 (411)
Q Consensus 379 ~~~f~y~ 385 (411)
.+++.|.
T Consensus 78 ~~~~t~~ 84 (92)
T PF13524_consen 78 LKRHTWE 84 (92)
T ss_pred HHhCCHH
Confidence 5566554
No 32
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=93.80 E-value=0.21 Score=50.00 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=59.7
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHHH
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDAE 367 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~~ 367 (411)
...+.++.+.+++.|...+.....++|||.+| +|||.+|.-- -.+.|.-..-.+.++. +..++.+.+..+ .++.
T Consensus 292 ~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 292 QKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGG--PLETVVDGETGFLCEP-TPEEFAEAMLKLANDPDL 367 (392)
T ss_pred HHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCC--cHHHhccCCceEEeCC-CHHHHHHHHHHHHhChHH
Confidence 44577899999999887776677899999999 6777776421 1233333233444554 555555544443 3456
Q ss_pred HHHHHHHHHH-hhccceec
Q 015235 368 FVSLHNNLVK-VQKHFQWN 385 (411)
Q Consensus 368 ~~~mq~~l~~-~~~~f~y~ 385 (411)
..+|+++.++ +.+.|.|.
T Consensus 368 ~~~~~~~a~~~~~~~~s~~ 386 (392)
T cd03805 368 ADRMGAAGRKRVKEKFSTE 386 (392)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 7888887765 56677664
No 33
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=93.48 E-value=0.26 Score=50.84 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=66.4
Q ss_pred hhHHhhccCceEEeecCCC------CCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc
Q 015235 289 LVYQRRFYKTKFCICPGGS------QVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~------~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~ 362 (411)
.+..+.++.+..++.|.=. .....-++|||.+|| |||.++.-- ..++|.=..-.+.+++.|..++.+.+..
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g--~~E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSG--IPELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCC--chhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 4567889999999998521 223567999999995 999887432 2355544556777888888887777665
Q ss_pred C---CHHHHHHHHHHHHH-hhccceec
Q 015235 363 I---SDAEFVSLHNNLVK-VQKHFQWN 385 (411)
Q Consensus 363 i---~~~~~~~mq~~l~~-~~~~f~y~ 385 (411)
+ ++++..+|.++.++ +.++|.|.
T Consensus 367 l~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 367 FSQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 5 56778888888764 55666654
No 34
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=93.41 E-value=0.28 Score=50.75 Aligned_cols=93 Identities=10% Similarity=0.097 Sum_probs=59.9
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCC---CCcEEEEEcccCHHHHHHHHh---c
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILD---WRKFAVILNERDVYQLKQILK---N 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~id---w~~fsV~v~e~~~~~l~~~L~---~ 362 (411)
.+..+.++.|..++.|.=+...+.-++|||++||.||. ++. --|.++++. -..-.+.+. +..++.+.+. +
T Consensus 316 ~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-~~~-ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 316 EELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA-HAS-GGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred HHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE-EcC-CCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 56778899999999987667778889999999997665 442 135556553 222222232 4444333332 2
Q ss_pred CCHHHHHHHHHHHHHhhccceec
Q 015235 363 ISDAEFVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 363 i~~~~~~~mq~~l~~~~~~f~y~ 385 (411)
.++++...|+++-+++.++|.|+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 392 LSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred CCHHHHHHHHHHHHHHHHhhCHH
Confidence 35666667777777787877654
No 35
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=93.28 E-value=0.24 Score=50.45 Aligned_cols=95 Identities=9% Similarity=0.158 Sum_probs=61.4
Q ss_pred hhHHhhccCceEEeecCCC-CCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEE-EEEcccCHHHHHHHHhcC-CH
Q 015235 289 LVYQRRFYKTKFCICPGGS-QVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFA-VILNERDVYQLKQILKNI-SD 365 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~-~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fs-V~v~e~~~~~l~~~L~~i-~~ 365 (411)
.+..+.++.|..+++|..+ +....-++|||++| +|||.++.-- ..+++.=..-. +.++..+..++.+.+..+ .+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3556778999999999864 55567899999999 7899887522 23444222223 245566666665555443 33
Q ss_pred HHHHHHHHHHHH-hhccceecC
Q 015235 366 AEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 366 ~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
.+..+|.++.++ +.++|.|..
T Consensus 345 ~~~~~~~~~ar~~~~~~fsw~~ 366 (380)
T PRK15484 345 PELTQIAEQAKDFVFSKYSWEG 366 (380)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 445677777664 567777764
No 36
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=93.25 E-value=0.14 Score=50.75 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=49.0
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
.+..+.++.+..+++|.- ...+..++|||++|| |||.++.-- ..+.+.=....+.++..+..++.+.+..+
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 457788999999998865 445667899999997 999887422 22444333557777777776665555444
No 37
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=93.17 E-value=0.19 Score=50.06 Aligned_cols=93 Identities=11% Similarity=0.201 Sum_probs=65.0
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc-eecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY-YDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~-~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
+..+.++.+..++.|.-.+.....+.|||.+|| |||..+- ... .+.+.=..-.+.++..+..++.+.|..+ .++
T Consensus 271 ~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~--~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 271 DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP--SEIIEDGENGYLVPKGDIEALAEAIIELLNDPK 347 (372)
T ss_pred CHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc--HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH
Confidence 455678899999999766566778999999998 7777652 221 2334334556677777777766655544 456
Q ss_pred HHHHHHHHHHHhhccceec
Q 015235 367 EFVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 367 ~~~~mq~~l~~~~~~f~y~ 385 (411)
...+|+++..+..+.|.|.
T Consensus 348 ~~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 348 LLQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 7889988888777776654
No 38
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=92.40 E-value=0.87 Score=47.64 Aligned_cols=93 Identities=17% Similarity=0.301 Sum_probs=60.8
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCC-CCC-----cEEEEEcccCHHHHHHHHhcC
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDIL-DWR-----KFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~i-dw~-----~fsV~v~e~~~~~l~~~L~~i 363 (411)
...+.++.+.++++|.-+++...-..|||.+||.||. ++.- ...+.| |.+ .-.+.+++.+..++.+.+..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 3556789999999998888888889999999996664 4421 122332 221 456777877777665554443
Q ss_pred ------CHHHHHHHHHHHHHhhccceecCC
Q 015235 364 ------SDAEFVSLHNNLVKVQKHFQWNSP 387 (411)
Q Consensus 364 ------~~~~~~~mq~~l~~~~~~f~y~~~ 387 (411)
.++...+|.++.. .+.|.|...
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~~~ 462 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWDKS 462 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcHHH
Confidence 3455667766543 356766543
No 39
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.19 E-value=0.34 Score=50.25 Aligned_cols=85 Identities=13% Similarity=0.313 Sum_probs=58.6
Q ss_pred eEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHHHHHHHHHHHH
Q 015235 299 KFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDAEFVSLHNNLV 376 (411)
Q Consensus 299 ~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~~~~~mq~~l~ 376 (411)
..++.|.-......-+.|||++|| |||.++.- ...++++=..-.+.++..|..++.+.+..+ .+++..+|.++.+
T Consensus 342 Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 342 GIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred CEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 555667655556778999999999 99999852 234555545567778888887766666554 4566677777765
Q ss_pred H-hhccceecC
Q 015235 377 K-VQKHFQWNS 386 (411)
Q Consensus 377 ~-~~~~f~y~~ 386 (411)
+ +.++|.|..
T Consensus 419 ~~~~~~fsw~~ 429 (439)
T TIGR02472 419 EGVRRHYSWDA 429 (439)
T ss_pred HHHHHhCCHHH
Confidence 4 667787764
No 40
>PRK10307 putative glycosyl transferase; Provisional
Probab=92.19 E-value=0.23 Score=50.64 Aligned_cols=95 Identities=7% Similarity=0.080 Sum_probs=66.6
Q ss_pred hhHHhhccCceEEeecCCCCC----CchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC-
Q 015235 289 LVYQRRFYKTKFCICPGGSQV----NSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI- 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~----~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i- 363 (411)
.+..+.++.+..++.|.=.+. ....++|+|++| +|||.++.--....+++. .-.+.++..|..++.+.+..+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHH
Confidence 456778899999888853222 234589999999 688887642223335565 457778888888888877765
Q ss_pred -CHHHHHHHHHHHHH-hhccceecC
Q 015235 364 -SDAEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 364 -~~~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
.++...+|+++.++ +.++|.|..
T Consensus 372 ~~~~~~~~~~~~a~~~~~~~fs~~~ 396 (412)
T PRK10307 372 RQALLRPKLGTVAREYAERTLDKEN 396 (412)
T ss_pred hCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 45677889888876 566787764
No 41
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=92.00 E-value=0.52 Score=45.64 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=45.5
Q ss_pred hhHHhhccCceEEeecCC-CCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 289 LVYQRRFYKTKFCICPGG-SQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G-~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
.+..+.++.+.+++.|.- .+.....++|||++|+ |||.+|.-- ..++++=..-.+.++. ..++.+.|+.+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~--~~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGA--VPEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCC--chhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 345678899999999974 3455678999999997 999988532 2344433222333443 55555555544
No 42
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.47 E-value=1.7 Score=42.57 Aligned_cols=92 Identities=16% Similarity=0.279 Sum_probs=55.5
Q ss_pred hhHHhhccCceEEeecCCC-CCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccC-HHHHHHHHhcCCHH
Q 015235 289 LVYQRRFYKTKFCICPGGS-QVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERD-VYQLKQILKNISDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~-~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~-~~~l~~~L~~i~~~ 366 (411)
.+..+.+..+..++.|.-. +.....++|||.+|| |||.++.- +..+++.-. ...++..+ +.+....|.+- ++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~~-~~ 332 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLEELEAD-PE 332 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHHHHHhC-HH
Confidence 3456778888888888655 556678999999999 77777632 233444332 33344444 44433333332 35
Q ss_pred HHHHHHHHHHHh-hccceecC
Q 015235 367 EFVSLHNNLVKV-QKHFQWNS 386 (411)
Q Consensus 367 ~~~~mq~~l~~~-~~~f~y~~ 386 (411)
...+|.++.++. .++|.|+.
T Consensus 333 ~~~~~~~~~~~~~~~~fs~~~ 353 (363)
T cd04955 333 EVSAMAKAARERIREKYTWEK 353 (363)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 677777776654 44566653
No 43
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=91.20 E-value=0.92 Score=44.34 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=63.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~ 366 (411)
....+.++.|.+.+.|......+..++|||.+|| |||.++. -+..+.+.=..-.+.++..+..++.+.|..+ .++
T Consensus 256 ~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~-PvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 256 ESLALIYSAADVFVVPSLQENFPNTAIEALACGT-PVVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred HHHHHHHHhCCEEEeccccccccHHHHHHHhcCC-CEEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3566789999999999887777889999999997 5666653 2334444434456677777776665555443 355
Q ss_pred HHHHHHHHHHHh-hcccee
Q 015235 367 EFVSLHNNLVKV-QKHFQW 384 (411)
Q Consensus 367 ~~~~mq~~l~~~-~~~f~y 384 (411)
+..+|.++.++. .+.|.|
T Consensus 333 ~~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 333 EREELGEAARELAENEFDS 351 (365)
T ss_pred HHHHHHHHHHHHHHHhcCH
Confidence 677888777654 345544
No 44
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=91.18 E-value=0.7 Score=46.98 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=58.5
Q ss_pred hHHhhccCceEEeecC--CCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CH
Q 015235 290 VYQRRFYKTKFCICPG--GSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SD 365 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~--G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~ 365 (411)
+..+.++.+..+++|. |.+ ....++|||++|| |||.++.- .+.+..=....+.++ .+..++.+.+..+ .+
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG-~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARG-IQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCC-cccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 3456788999999885 333 3457999999997 99988742 122211123345555 6666665555443 45
Q ss_pred HHHHHHHHHHHH-hhccceecC
Q 015235 366 AEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 366 ~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
++..+|.++.++ +.++|.|..
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 667888888775 567787764
No 45
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=90.96 E-value=0.33 Score=52.46 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=71.8
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecC-C-CCCC-CCCcEEEEEc-------ccCHHHHHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLP-F-NDIL-DWRKFAVILN-------ERDVYQLKQ 358 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lP-f-~~~i-dw~~fsV~v~-------e~~~~~l~~ 358 (411)
..|.+.++.+.-++.|.-+.+++.-..||+++| +|||.++.--++ + .+++ +-.+..|.|. .+.+.+|.+
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G-~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG-IPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcC-CCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 568899999999999998888999999999999 699999864432 0 1333 3335667776 233445555
Q ss_pred HHhcC---CHHHHHHHHHHHHHhhccceecCCCCCc-CHHHHHH
Q 015235 359 ILKNI---SDAEFVSLHNNLVKVQKHFQWNSPPVRF-DAFHMVM 398 (411)
Q Consensus 359 ~L~~i---~~~~~~~mq~~l~~~~~~f~y~~~~~~~-DAf~~il 398 (411)
.|..+ +..+....|..-.+..+.|.|..-...| .|.+++|
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 55443 3333333333344788889888754333 5666655
No 46
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=90.73 E-value=0.88 Score=43.18 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=57.8
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHH----HHHHhcCC-
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQL----KQILKNIS- 364 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l----~~~L~~i~- 364 (411)
+..+.++.+.++++|.-.+..+..++||+.+||. ||.+|.- ...+++.=....+.++.++...+ ..++....
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 3456789999999998666667889999999975 5555543 23345544556777888887765 33333333
Q ss_pred HHHHHHHHH-HHHHhhccc
Q 015235 365 DAEFVSLHN-NLVKVQKHF 382 (411)
Q Consensus 365 ~~~~~~mq~-~l~~~~~~f 382 (411)
++...+|.. +...+.++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~ 351 (353)
T cd03811 333 PELRERLAAAARERVAREY 351 (353)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 445566666 344444443
No 47
>PRK00654 glgA glycogen synthase; Provisional
Probab=90.72 E-value=0.87 Score=47.74 Aligned_cols=92 Identities=13% Similarity=0.334 Sum_probs=60.3
Q ss_pred HHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCC-CCC-----cEEEEEcccCHHHHHHHHhcC-
Q 015235 291 YQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDIL-DWR-----KFAVILNERDVYQLKQILKNI- 363 (411)
Q Consensus 291 y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~i-dw~-----~fsV~v~e~~~~~l~~~L~~i- 363 (411)
....++.+.+++.|.=+++......|||.+||+||+-..+ ...|.| |.. .-.+.++..|..++.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g---G~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG---GLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC---CccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 3467899999999987888888999999999988774322 112222 321 446777888877766655443
Q ss_pred ----CHHHHHHHHHHHHHhhccceecCC
Q 015235 364 ----SDAEFVSLHNNLVKVQKHFQWNSP 387 (411)
Q Consensus 364 ----~~~~~~~mq~~l~~~~~~f~y~~~ 387 (411)
.++...+|.++.. .+.|.|...
T Consensus 427 ~~~~~~~~~~~~~~~~~--~~~fsw~~~ 452 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM--AQDFSWDKS 452 (466)
T ss_pred HHhcCHHHHHHHHHHHh--ccCCChHHH
Confidence 3445666665543 356766654
No 48
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=90.50 E-value=0.81 Score=45.91 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=60.5
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccC-HH-HHHHHHhcCCHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERD-VY-QLKQILKNISDA 366 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~-~~-~l~~~L~~i~~~ 366 (411)
....+.++.+..++.|...+....-+.|||++| +|||.++.--++ +.|.-....+.++..+ +. .|...|. .++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 455677889999999987777788999999999 699998743332 3333333333344222 22 2333332 466
Q ss_pred HHHHHHHHHHH-hhccceecC
Q 015235 367 EFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 367 ~~~~mq~~l~~-~~~~f~y~~ 386 (411)
+..+|.++.++ +.+.|.|..
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 340 LRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHHH
Confidence 77888888776 456777654
No 49
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=90.27 E-value=2 Score=43.96 Aligned_cols=120 Identities=12% Similarity=0.120 Sum_probs=72.6
Q ss_pred CccceeeeeccCCC-hHHHHHHHHHhhcCCcccccccccc----cCCCchhHHhhccCceEEeecCC---CCCCchhHHH
Q 015235 245 ENRTVLGFWAGHRN-SKIRVILARVWENDTELDISNNRIN----RAIGPLVYQRRFYKTKFCICPGG---SQVNSARIAD 316 (411)
Q Consensus 245 ~~R~~L~fFaG~~~-~~vR~~L~~~~~~~~~~~i~~~~~~----~~~~~~~y~~~~~~S~FCL~p~G---~~~~s~rl~d 316 (411)
.+++.++++..+.+ ..-|..+.+.....-++++.+ +|. .......-.+.+..-||-|.-.. ...-+-.|+-
T Consensus 194 ~k~~~~aw~vSnc~~~~~R~~~~~~L~k~l~iD~YG-~c~~~~~~~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~ 272 (372)
T KOG2619|consen 194 AKTKLAAWLVSNCIPRSARLDYYKELMKHLEIDSYG-ECLRKNANRDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWN 272 (372)
T ss_pred cccceeeeeccccCcchHHHHHHHHHHhhCceeecc-ccccccccCCCCCcceeecccceEEEEecccCCcccccHHHHh
Confidence 45566666665542 345655665555433344322 221 12223345677889999997532 2334788999
Q ss_pred HHhhCceeEEEeCceecCCCCCCCCCcEEEEEcc-cCHHHHHHHHhcCCHHHHH
Q 015235 317 SIHYGCVPVILSNYYDLPFNDILDWRKFAVILNE-RDVYQLKQILKNISDAEFV 369 (411)
Q Consensus 317 ai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e-~~~~~l~~~L~~i~~~~~~ 369 (411)
|+.+|.|||+++......| +. .+..|.|+. ..+.+|...|+.+.+++.+
T Consensus 273 al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~ylk~L~~n~~~ 322 (372)
T KOG2619|consen 273 ALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYLKKLDKNPAA 322 (372)
T ss_pred hhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHHHHhhcCHHH
Confidence 9999999999998544333 33 455555554 3567888899988544433
No 50
>PRK14098 glycogen synthase; Provisional
Probab=89.88 E-value=2.2 Score=45.27 Aligned_cols=94 Identities=13% Similarity=0.260 Sum_probs=61.9
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCC-CC---CcEEEEEcccCHHHHHHHHhcC--
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDIL-DW---RKFAVILNERDVYQLKQILKNI-- 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~i-dw---~~fsV~v~e~~~~~l~~~L~~i-- 363 (411)
...+.++.+.+++.|.-.++......|||.+||+||+...+- + .|.+ |+ ..-.+.+++.|...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l--~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-I--VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-C--ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 345678999999999888888889999999999999865421 1 1111 21 3345667887877766655431
Q ss_pred ---CHHHHHHHHHHHHHhhccceecCCC
Q 015235 364 ---SDAEFVSLHNNLVKVQKHFQWNSPP 388 (411)
Q Consensus 364 ---~~~~~~~mq~~l~~~~~~f~y~~~~ 388 (411)
.+++..+|+++. +.+.|.|....
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~~~a 476 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWKNSA 476 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChHHHH
Confidence 345566665543 34667776543
No 51
>PHA01633 putative glycosyl transferase group 1
Probab=89.73 E-value=0.75 Score=46.58 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=34.8
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY 330 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~ 330 (411)
.+..+.++.+.+.+.|.-.+....-+.|||++|| |||.++-
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 3456788999999999877778889999999999 9998864
No 52
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=89.61 E-value=0.43 Score=40.28 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=41.1
Q ss_pred hhHHhhccCceEEeecCC-CCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc
Q 015235 289 LVYQRRFYKTKFCICPGG-SQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G-~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~ 362 (411)
.++.+.++++..+++|.- +...+..++|++.+|| |||.++. ++.+.+.-....+.+ ..+..++.+.|+.
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~~ 131 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIER 131 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHHHHH
Confidence 368888999999999963 2345789999999997 5555655 444444335566666 6677766666554
No 53
>PLN02949 transferase, transferring glycosyl groups
Probab=89.48 E-value=1 Score=47.59 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=58.4
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCC-CCC-cEEEEEcccCHHHHHHHHhcC---
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDIL-DWR-KFAVILNERDVYQLKQILKNI--- 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~i-dw~-~fsV~v~e~~~~~l~~~L~~i--- 363 (411)
.+..+.++++.+++.|.-++....-+.|||++||+||.-..+ =|-++++ ++. .-.-++. .+..++.+.+..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHHHHHHHHHHhC
Confidence 456677889999998876677788899999999877765432 1222332 111 0111111 2555544444333
Q ss_pred CHHHHHHHHHHHHHhhccceecC
Q 015235 364 SDAEFVSLHNNLVKVQKHFQWNS 386 (411)
Q Consensus 364 ~~~~~~~mq~~l~~~~~~f~y~~ 386 (411)
++++..+|+++.++..++|.|..
T Consensus 423 ~~~~r~~m~~~ar~~~~~FS~e~ 445 (463)
T PLN02949 423 RETERLEIAAAARKRANRFSEQR 445 (463)
T ss_pred CHHHHHHHHHHHHHHHHHcCHHH
Confidence 56777889888877666676543
No 54
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=89.07 E-value=0.56 Score=47.03 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=50.5
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
.+.+.++.+..++.|........-++|||++| +|||.+|..-- ..++|.=..-.+.++..|..++.+.+..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 34566788899999987766788999999999 68888872211 22444334455667888888777666655
No 55
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.41 E-value=1.1 Score=47.04 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=64.5
Q ss_pred chhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCC------CcEEEEEcccCHHHHHHHHh
Q 015235 288 PLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDW------RKFAVILNERDVYQLKQILK 361 (411)
Q Consensus 288 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw------~~fsV~v~e~~~~~l~~~L~ 361 (411)
..+..+.|..+..++.|.-.......++|||++|| |||.+|.- ...+.++= ....+.++..|..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVG--SCRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 34566778899999988755555678999999998 88887632 12233322 34677888888887766665
Q ss_pred cC--CHHHHHHHHHHHHH-hhccceec
Q 015235 362 NI--SDAEFVSLHNNLVK-VQKHFQWN 385 (411)
Q Consensus 362 ~i--~~~~~~~mq~~l~~-~~~~f~y~ 385 (411)
.+ .++...+|.++.++ +.+.|.|.
T Consensus 438 ~ll~~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 438 RLLKDPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 54 46778888887765 45555543
No 56
>PRK14099 glycogen synthase; Provisional
Probab=88.34 E-value=1.7 Score=46.15 Aligned_cols=96 Identities=17% Similarity=0.273 Sum_probs=63.7
Q ss_pred hHHhhc-cCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCC-CCCCC--------cEEEEEcccCHHHHHHH
Q 015235 290 VYQRRF-YKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFND-ILDWR--------KFAVILNERDVYQLKQI 359 (411)
Q Consensus 290 ~y~~~~-~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~-~idw~--------~fsV~v~e~~~~~l~~~ 359 (411)
+....+ +.+.+.+.|.=+++...-..|||.+||+||+ ++-=-+ .| ++|.+ .-.+.++..|...|.+.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGL--ADTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCc--cceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 344455 4689989998888888899999999999988 442111 12 22332 34677788888777666
Q ss_pred Hhc----C-CHHHHHHHHHHHHHhhccceecCCCCC
Q 015235 360 LKN----I-SDAEFVSLHNNLVKVQKHFQWNSPPVR 390 (411)
Q Consensus 360 L~~----i-~~~~~~~mq~~l~~~~~~f~y~~~~~~ 390 (411)
|.. + .++...+|+++.. .+.|.|.....+
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a~~ 471 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRNPAQH 471 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHHHHHH
Confidence 653 2 4566777887764 467877765433
No 57
>PHA01630 putative group 1 glycosyl transferase
Probab=88.26 E-value=1.3 Score=44.61 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=32.1
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeC
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSN 329 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d 329 (411)
.+..+.++.+..++.|.-.+....-+.|||++|| |||.+|
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~ 240 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTE 240 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeC
Confidence 4566789999999999766666777999999997 666666
No 58
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=88.23 E-value=1.8 Score=44.44 Aligned_cols=93 Identities=15% Similarity=0.252 Sum_probs=57.0
Q ss_pred hHHhhccC--ceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcc-cCHHHHHHHHhcC--C
Q 015235 290 VYQRRFYK--TKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNE-RDVYQLKQILKNI--S 364 (411)
Q Consensus 290 ~y~~~~~~--S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e-~~~~~l~~~L~~i--~ 364 (411)
+..+.++. +...+.|.........+.|||++|+ |||.+|--- ..++|+=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg--~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGG--TPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCC--cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 34455554 3344445544445678999999995 999887322 2355544434555554 3566655555554 5
Q ss_pred HHHHHHHHHHHHHh-hccceec
Q 015235 365 DAEFVSLHNNLVKV-QKHFQWN 385 (411)
Q Consensus 365 ~~~~~~mq~~l~~~-~~~f~y~ 385 (411)
+++..+|+++.++. .++|.+.
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~~ 399 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNAS 399 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCHH
Confidence 77888998887764 4566543
No 59
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.53 E-value=1.9 Score=41.98 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=63.1
Q ss_pred hhHHhhccCceEEeecCC--CCCCchhHHHHHhhCceeEEEeCceecCCCCCC-CCCcEEEEEcccCHHHHHHHHhcC--
Q 015235 289 LVYQRRFYKTKFCICPGG--SQVNSARIADSIHYGCVPVILSNYYDLPFNDIL-DWRKFAVILNERDVYQLKQILKNI-- 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G--~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~i-dw~~fsV~v~e~~~~~l~~~L~~i-- 363 (411)
.+..+.++.+..+++|.- .+.....+.||+.+| +|||.++.-..+ +.+ +.......++..|..++.+.+..+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g-~Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFG-KPVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcC-CCEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 456678889999998852 234456799999998 577776632221 222 235667778888887777666654
Q ss_pred CHHHHHHHHHHHHH-hhccceec
Q 015235 364 SDAEFVSLHNNLVK-VQKHFQWN 385 (411)
Q Consensus 364 ~~~~~~~mq~~l~~-~~~~f~y~ 385 (411)
.+++..+|.++.++ +.++|.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 332 DPELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred CHHHHHHHHHHHHHHHHHhcchH
Confidence 46778889888776 45666553
No 60
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=85.95 E-value=2 Score=44.62 Aligned_cols=91 Identities=15% Similarity=0.336 Sum_probs=57.9
Q ss_pred HHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCC-CCCC-----cEEEEEcccCHHHHHHHHhcC-
Q 015235 291 YQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDI-LDWR-----KFAVILNERDVYQLKQILKNI- 363 (411)
Q Consensus 291 y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~-idw~-----~fsV~v~e~~~~~l~~~L~~i- 363 (411)
..+.++.+.+.+.|.-+++......|||.+||.||.-..+ ...|. .|.. .-.+.++..+..++.+.+..+
T Consensus 364 ~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l 440 (476)
T cd03791 364 AHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRAL 440 (476)
T ss_pred HHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHH
Confidence 4467889999999988888888899999999988753322 11222 2332 146667777776665555442
Q ss_pred ----CHHHHHHHHHHHHHhhccceecC
Q 015235 364 ----SDAEFVSLHNNLVKVQKHFQWNS 386 (411)
Q Consensus 364 ----~~~~~~~mq~~l~~~~~~f~y~~ 386 (411)
.+++..+|.++..+ ..|.|..
T Consensus 441 ~~~~~~~~~~~~~~~~~~--~~fsw~~ 465 (476)
T cd03791 441 ALYRDPEAWRKLQRNAMA--QDFSWDR 465 (476)
T ss_pred HHHcCHHHHHHHHHHHhc--cCCChHH
Confidence 24666666666532 3455543
No 61
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=85.46 E-value=2.5 Score=43.56 Aligned_cols=86 Identities=13% Similarity=0.243 Sum_probs=54.0
Q ss_pred chhHHhhccCceEEeecC----CCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 288 PLVYQRRFYKTKFCICPG----GSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 288 ~~~y~~~~~~S~FCL~p~----G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
..++.+.++.+..+++|. |.+ ...-++|||++|+ |||.++.-- ..++|.=..-.+.++ |..++.+.+..+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PVI~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~l 378 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PVCALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDL 378 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-CEEEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHH
Confidence 356778889999887642 332 3567999999998 999987432 224443333333342 555554444333
Q ss_pred -----CHHHHHHHHHHHHHhh
Q 015235 364 -----SDAEFVSLHNNLVKVQ 379 (411)
Q Consensus 364 -----~~~~~~~mq~~l~~~~ 379 (411)
++++..+|.++.++..
T Consensus 379 l~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 379 LSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HhcCCCHHHHHHHHHHHHHhh
Confidence 2677888888877654
No 62
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=84.16 E-value=2 Score=43.61 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=58.0
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC---CH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI---SD 365 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i---~~ 365 (411)
.+..+.++.+..++.|.-.+.....+.|||++|| |||.++.-- ..++++-.. .+.++. +..++.+.|..+ +.
T Consensus 261 ~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~~-~~~~~~-~~~~l~~~l~~~l~~~~ 335 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPDM-ILLAEP-DVESIVRKLEEAISILR 335 (398)
T ss_pred HHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCCc-eeecCC-CHHHHHHHHHHHHhChh
Confidence 5677788999999988755555678999999997 666666432 234443222 334443 555444433322 22
Q ss_pred HHHHHHHHHHHHhhccceecCCCCC
Q 015235 366 AEFVSLHNNLVKVQKHFQWNSPPVR 390 (411)
Q Consensus 366 ~~~~~mq~~l~~~~~~f~y~~~~~~ 390 (411)
++...+++...++.++|.|.....+
T Consensus 336 ~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 336 TGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred hhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 2323344445667888888765433
No 63
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=84.12 E-value=2.7 Score=48.52 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=61.2
Q ss_pred eEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--CHHHHHHHHHHHH
Q 015235 299 KFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI--SDAEFVSLHNNLV 376 (411)
Q Consensus 299 ~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~~~~~~~mq~~l~ 376 (411)
..++.|.=..+...-+.|||++| +|||.++.- ...++|.-..-.+.|+..|...|.+.|..+ .++...+|.++..
T Consensus 573 DVFV~PS~~EgFGLvlLEAMAcG-lPVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr 649 (1050)
T TIGR02468 573 GVFINPAFIEPFGLTLIEAAAHG-LPMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGL 649 (1050)
T ss_pred CeeeCCcccCCCCHHHHHHHHhC-CCEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 35666766677788899999999 599998742 334555555667788888888777666554 4566788988877
Q ss_pred HhhccceecC
Q 015235 377 KVQKHFQWNS 386 (411)
Q Consensus 377 ~~~~~f~y~~ 386 (411)
+..+.|.|..
T Consensus 650 ~~v~~FSWe~ 659 (1050)
T TIGR02468 650 KNIHLFSWPE 659 (1050)
T ss_pred HHHHHCCHHH
Confidence 6666777754
No 64
>PLN02939 transferase, transferring glycosyl groups
Probab=82.39 E-value=4.1 Score=46.66 Aligned_cols=95 Identities=16% Similarity=0.288 Sum_probs=62.6
Q ss_pred hhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCC--------cEEEEEcccCHHHHHHHHhc--
Q 015235 293 RRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWR--------KFAVILNERDVYQLKQILKN-- 362 (411)
Q Consensus 293 ~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~--------~fsV~v~e~~~~~l~~~L~~-- 362 (411)
..++.+.++++|.=+.+...-..|||.+||+||+...+= ++ +-+.|++ .-.+.++..|...+.+.|..
T Consensus 852 ~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL 929 (977)
T PLN02939 852 SIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAF 929 (977)
T ss_pred HHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHH
Confidence 568899999999888888899999999999998754321 11 1122321 23555677777665544432
Q ss_pred --C--CHHHHHHHHHHHHHhhccceecCCCCCc
Q 015235 363 --I--SDAEFVSLHNNLVKVQKHFQWNSPPVRF 391 (411)
Q Consensus 363 --i--~~~~~~~mq~~l~~~~~~f~y~~~~~~~ 391 (411)
+ .++...+|+++. +.+.|.|......+
T Consensus 930 ~~~~~dpe~~~~L~~~a--m~~dFSWe~~A~qY 960 (977)
T PLN02939 930 NYYKRKPEVWKQLVQKD--MNIDFSWDSSASQY 960 (977)
T ss_pred HHhccCHHHHHHHHHHH--HHhcCCHHHHHHHH
Confidence 2 467777887654 45678887654443
No 65
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=79.25 E-value=3.9 Score=40.22 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=51.0
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCC-----CCCCCCcEEEEEcccC--HHHHHHHHhc
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFN-----DILDWRKFAVILNERD--VYQLKQILKN 362 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~-----~~idw~~fsV~v~e~~--~~~l~~~L~~ 362 (411)
++.+.|..+..++.+.| ..-++||+.+| +|||+.+.-.-+-+ +.+......+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g-~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAG-VPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcC-CCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67788999999998866 24689999999 57777531000000 1233345556666554 5555554443
Q ss_pred C--CHHHHHHHHHHHHH
Q 015235 363 I--SDAEFVSLHNNLVK 377 (411)
Q Consensus 363 i--~~~~~~~mq~~l~~ 377 (411)
+ .++...+|.++.++
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 3 45667777777654
No 66
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=78.32 E-value=12 Score=38.31 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=56.7
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeC-----ceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC-
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSN-----YYDLPFNDILDWRKFAVILNERDVYQLKQILKNI- 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d-----~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i- 363 (411)
+..+.+.++.+.+.-.=++.....++|+|++|-|||.=.. +++.|.+. +-.=+..+++..-...+|+-+
T Consensus 349 ~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G-----~~tGFla~t~~EYaE~iLkIv~ 423 (465)
T KOG1387|consen 349 KLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDG-----ETTGFLAPTDEEYAEAILKIVK 423 (465)
T ss_pred HHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCC-----ccceeecCChHHHHHHHHHHHH
Confidence 4567889999999888788888999999999999987443 24555432 222233444433333344332
Q ss_pred -CHHHHHHHHHHHHHhhccc
Q 015235 364 -SDAEFVSLHNNLVKVQKHF 382 (411)
Q Consensus 364 -~~~~~~~mq~~l~~~~~~f 382 (411)
+.++...||++-+.---+|
T Consensus 424 ~~~~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 424 LNYDERNMMRRNARKSLARF 443 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 4556778888776554444
No 67
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=77.55 E-value=6 Score=42.92 Aligned_cols=63 Identities=13% Similarity=0.007 Sum_probs=44.5
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHH
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQ 355 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~ 355 (411)
+..+.|+.+..++.|.-++....-++|||.+|| |||.++.--. .+.|.-..-.+.++..|...
T Consensus 465 Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~a 527 (578)
T PRK15490 465 DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVN 527 (578)
T ss_pred hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhh
Confidence 455678888888888767777889999999998 9998874222 24443345556677766543
No 68
>PLN00142 sucrose synthase
Probab=76.20 E-value=11 Score=42.55 Aligned_cols=92 Identities=7% Similarity=0.071 Sum_probs=60.3
Q ss_pred hhccC-ceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHh----c--CCH
Q 015235 293 RRFYK-TKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILK----N--ISD 365 (411)
Q Consensus 293 ~~~~~-S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~----~--i~~ 365 (411)
..+++ +..+++|.=+++...-+.|||++|+ |||.++.=-+ .++|.-..-.+.|+..|..++.+.|. . -.+
T Consensus 661 r~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 661 RYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred HHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCH
Confidence 33443 4555678767777889999999996 7777764222 23444455577788877776554442 2 146
Q ss_pred HHHHHHHHHH-HHhhccceecCC
Q 015235 366 AEFVSLHNNL-VKVQKHFQWNSP 387 (411)
Q Consensus 366 ~~~~~mq~~l-~~~~~~f~y~~~ 387 (411)
+...+|.++. .++.++|.|..-
T Consensus 738 ~lr~~mg~~Ar~rv~e~FSWe~~ 760 (815)
T PLN00142 738 SYWNKISDAGLQRIYECYTWKIY 760 (815)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHH
Confidence 6778888775 456788888653
No 69
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=76.09 E-value=3.5 Score=34.14 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=25.1
Q ss_pred ccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEecc
Q 015235 109 LTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPIS 144 (411)
Q Consensus 109 ~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~ 144 (411)
..+++-+| .+...|.+.+| .|.+|++||+++|-.-
T Consensus 10 ~~N~~Dse-~i~~~l~~~G~~~~~~~e~AD~iiiNTC 45 (98)
T PF00919_consen 10 QMNQYDSE-RIASILQAAGYEIVDDPEEADVIIINTC 45 (98)
T ss_pred cccHHHHH-HHHHHHHhcCCeeecccccCCEEEEEcC
Confidence 35677676 34455666666 8899999999988654
No 70
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=74.79 E-value=9.5 Score=40.70 Aligned_cols=93 Identities=9% Similarity=0.133 Sum_probs=56.4
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc-eecCCCCCCCCCcEEEEEcc----c---C-HHHHHHHH
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY-YDLPFNDILDWRKFAVILNE----R---D-VYQLKQIL 360 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~-~~lPf~~~idw~~fsV~v~e----~---~-~~~l~~~L 360 (411)
+..+.+..+.-++.|.=.+....-+.|||++|| |||.+|- +-. .+.|.=..-.+.++. . + +.++.+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 345667777777777755566788999999996 7777662 221 233432333344441 2 2 44444333
Q ss_pred hc-CCHHHHHHHHHHHHHhhccceec
Q 015235 361 KN-ISDAEFVSLHNNLVKVQKHFQWN 385 (411)
Q Consensus 361 ~~-i~~~~~~~mq~~l~~~~~~f~y~ 385 (411)
.. +.+++..+|.++..+..+.|.|.
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 22 24667888988888877777654
No 71
>PLN02316 synthase/transferase
Probab=69.44 E-value=7 Score=45.33 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=60.4
Q ss_pred hhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCC------------cEEEEEcccCHHHHHHHH
Q 015235 293 RRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWR------------KFAVILNERDVYQLKQIL 360 (411)
Q Consensus 293 ~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~------------~fsV~v~e~~~~~l~~~L 360 (411)
..++.+.+.++|.=..+...-..|||.+||+||+-..+= +| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGG-L~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG-LF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCC-cH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 578999999999988888999999999999999954431 11 1122331 345667777766544433
Q ss_pred hc-CC--HHHHHHHHHHHHH-hhccceecCCCCCc
Q 015235 361 KN-IS--DAEFVSLHNNLVK-VQKHFQWNSPPVRF 391 (411)
Q Consensus 361 ~~-i~--~~~~~~mq~~l~~-~~~~f~y~~~~~~~ 391 (411)
.. +. .+....|++..++ +.+.|.|.....+|
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 22 21 1223334444443 45678887764443
No 72
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=69.13 E-value=21 Score=36.47 Aligned_cols=83 Identities=12% Similarity=0.241 Sum_probs=51.2
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCC-----CCcEEEEEcccCHHHHHHHHhcC-
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILD-----WRKFAVILNERDVYQLKQILKNI- 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~id-----w~~fsV~v~e~~~~~l~~~L~~i- 363 (411)
+..+.|+.|.+++..+| ..-+.||+.+| +|||+.+. .|-++..+ =..+++.+. +..++.+.+..+
T Consensus 266 ~~~~~~~~aDl~I~k~g----g~tl~EA~a~G-~PvI~~~~--~pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPG----GITISEGLARC-IPMIFLNP--APGQELENALYFEEKGFGKIAD--TPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCc----hHHHHHHHHhC-CCEEECCC--CCCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHHh
Confidence 45678999999988544 23589999999 58888763 24333221 223444432 444444444433
Q ss_pred -CHHHHHHHHHHHHHhhcc
Q 015235 364 -SDAEFVSLHNNLVKVQKH 381 (411)
Q Consensus 364 -~~~~~~~mq~~l~~~~~~ 381 (411)
.++++.+|+++..+..+.
T Consensus 337 ~~~~~~~~m~~~~~~~~~~ 355 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKIK 355 (391)
T ss_pred cCHHHHHHHHHHHHHhcCC
Confidence 467788998888776443
No 73
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=68.74 E-value=11 Score=36.58 Aligned_cols=71 Identities=8% Similarity=-0.067 Sum_probs=46.2
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
.+..+.++++.++++|.-.+..+.-++|||.+||- ||.++.-. ..+.+.- ........++..++.+.+..+
T Consensus 258 ~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~P-vI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 258 NDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLP-CILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred CCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCC-EEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 34567889999999998777778899999999975 55565322 2233322 334444555556665555554
No 74
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=68.18 E-value=24 Score=39.94 Aligned_cols=87 Identities=6% Similarity=0.151 Sum_probs=59.7
Q ss_pred ceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC------CHHHHHHH
Q 015235 298 TKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNI------SDAEFVSL 371 (411)
Q Consensus 298 S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i------~~~~~~~m 371 (411)
+..+++|.=+.+...-+.|||++|+ |||.++.=-+ .+.|.-..-.+.|+..|..++.+.|..+ .++...+|
T Consensus 644 adVfV~PS~~EpFGLvvLEAMAcGl-PVVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~m 720 (784)
T TIGR02470 644 KGIFVQPALYEAFGLTVLEAMTCGL-PTFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKI 720 (784)
T ss_pred CcEEEECCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3566788878888899999999997 5555553111 2334345567778888877666555432 56777888
Q ss_pred HHHHH-HhhccceecCC
Q 015235 372 HNNLV-KVQKHFQWNSP 387 (411)
Q Consensus 372 q~~l~-~~~~~f~y~~~ 387 (411)
.++.+ ++.++|.|..-
T Consensus 721 s~~a~~rV~~~FSW~~~ 737 (784)
T TIGR02470 721 SQGGLQRIYEKYTWKIY 737 (784)
T ss_pred HHHHHHHHHHhCCHHHH
Confidence 88854 57889998764
No 75
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=67.55 E-value=7.5 Score=40.86 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=59.6
Q ss_pred chhHHhhccCceEEeecCCCCCCchhHHHHHhhCce---eEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc--
Q 015235 288 PLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCV---PVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN-- 362 (411)
Q Consensus 288 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCI---PVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~-- 362 (411)
..+..+.++.+.-++.|.-......-..|||++||= |||+++.-=.+-. ..-.+.|+..|..++.+.+..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHH
Confidence 356777889999999887555556778999999996 6899874221111 133677888887776665543
Q ss_pred -CCHHHHHHHHHHHHHhhcc
Q 015235 363 -ISDAEFVSLHNNLVKVQKH 381 (411)
Q Consensus 363 -i~~~~~~~mq~~l~~~~~~ 381 (411)
.++++..+|.++.++....
T Consensus 426 ~~~~~e~~~~~~~~~~~v~~ 445 (460)
T cd03788 426 TMPLEERRERHRKLREYVRT 445 (460)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 3566666666666554444
No 76
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=67.51 E-value=38 Score=32.92 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=83.4
Q ss_pred CCCccceeeeeccCCChH-HHHHHHHHhhcCCc-c--cccccccc-cCC---C----chhHHhhccCceEEeecCCCCCC
Q 015235 243 DVENRTVLGFWAGHRNSK-IRVILARVWENDTE-L--DISNNRIN-RAI---G----PLVYQRRFYKTKFCICPGGSQVN 310 (411)
Q Consensus 243 ~~~~R~~L~fFaG~~~~~-vR~~L~~~~~~~~~-~--~i~~~~~~-~~~---~----~~~y~~~~~~S~FCL~p~G~~~~ 310 (411)
+-++|.-.++|.|...+. .|..|.+...+.++ + .+....+. .|. . ...=++...+-||=+...|.+ .
T Consensus 79 pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~-~ 157 (256)
T smart00672 79 KWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA-W 157 (256)
T ss_pred CccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCcc-c
Confidence 346677888999998766 89999987665543 3 22211100 010 0 011134456789999999987 5
Q ss_pred chhHHHHHhhCceeEEEeCceecCCCC-CCCCCcEEEEEcc--cC--HHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 015235 311 SARIADSIHYGCVPVILSNYYDLPFND-ILDWRKFAVILNE--RD--VYQLKQILKNISDAEFVSLHNNLVKVQKH 381 (411)
Q Consensus 311 s~rl~dai~~GCIPVii~d~~~lPf~~-~idw~~fsV~v~e--~~--~~~l~~~L~~i~~~~~~~mq~~l~~~~~~ 381 (411)
|-|+.--|.+|++++.....|..=|.+ ..+|.-|. -|.. +| +.+..+.+++- +++.+++-++..+..+.
T Consensus 158 S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~~-~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 158 SVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNEH-DKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred hhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 789999999999999887544332333 23565553 2322 23 77777766654 55566666666664444
No 77
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=65.85 E-value=6.4 Score=39.79 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=40.7
Q ss_pred hhHHhhccCceEEeecCCCC-----CCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc
Q 015235 289 LVYQRRFYKTKFCICPGGSQ-----VNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN 362 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~-----~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~ 362 (411)
.+..+.++.+..|+.|--.. .....++|+|++|+ |||.++ +.++.+...-.+.+ ..+..++.+.++.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 45667789999999995322 22357999999995 887654 23333333323333 3455555554444
No 78
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=62.17 E-value=16 Score=33.82 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=29.3
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY 330 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~ 330 (411)
...+.++.+...+.|.-.......+.||+.+| +|||.++.
T Consensus 269 ~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~ 308 (381)
T COG0438 269 ELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDV 308 (381)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCC
Confidence 45556777889999854333334499999999 99988764
No 79
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=62.08 E-value=26 Score=36.98 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=55.8
Q ss_pred chhHHhhccCceEEeecCCCCCCchhHHHHHhhCcee----EEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhc-
Q 015235 288 PLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVP----VILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKN- 362 (411)
Q Consensus 288 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIP----Vii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~- 362 (411)
..+....++.+.-|++|.=......-..|||++|+ | ||+++.-=.+ +.+. -++.|+..|..++.+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 45677889999999998755555677999999996 8 8888742211 1222 3677888888876665543
Q ss_pred --CCHHHHHHHHHHHHH
Q 015235 363 --ISDAEFVSLHNNLVK 377 (411)
Q Consensus 363 --i~~~~~~~mq~~l~~ 377 (411)
.++++..++.+++++
T Consensus 420 L~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 420 LTMPLEEREERHRAMMD 436 (456)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 355555554444443
No 80
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=61.56 E-value=22 Score=35.99 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=48.2
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCC------CCCCcEEEEEcccCHHHHHHHHhcC
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDI------LDWRKFAVILNERDVYQLKQILKNI 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~------idw~~fsV~v~e~~~~~l~~~L~~i 363 (411)
+..+.|..|...+.+.|. .-+.|||.+|+ |||+.+. .|-.++ ++ ....+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 466789999998887762 24899999995 7777763 233332 22 3444443 4544444444433
Q ss_pred ---CHHHHHHHHHHHHH
Q 015235 364 ---SDAEFVSLHNNLVK 377 (411)
Q Consensus 364 ---~~~~~~~mq~~l~~ 377 (411)
.++..++|+++.++
T Consensus 345 l~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 345 FGDKSDELEAMSENALK 361 (382)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 26677778777655
No 81
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=61.22 E-value=21 Score=35.44 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=50.2
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc-eecC-----CCCCCCCCcEEEEEcccC--HHHHHHHHh
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY-YDLP-----FNDILDWRKFAVILNERD--VYQLKQILK 361 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~-~~lP-----f~~~idw~~fsV~v~e~~--~~~l~~~L~ 361 (411)
++.+.|..+..+++..| ..-++||+.+|+ |||+.+. .... ..+.|--....+.++.++ ...|.+.++
T Consensus 245 ~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~ 319 (357)
T PRK00726 245 DMAAAYAAADLVICRAG----ASTVAELAAAGL-PAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLL 319 (357)
T ss_pred hHHHHHHhCCEEEECCC----HHHHHHHHHhCC-CEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHH
Confidence 56788999999998776 245899999996 5555432 1110 012222234566777666 555555555
Q ss_pred cC--CHHHHHHHHHHHHH
Q 015235 362 NI--SDAEFVSLHNNLVK 377 (411)
Q Consensus 362 ~i--~~~~~~~mq~~l~~ 377 (411)
.+ .++...+|+++.++
T Consensus 320 ~ll~~~~~~~~~~~~~~~ 337 (357)
T PRK00726 320 ELLSDPERLEAMAEAARA 337 (357)
T ss_pred HHHcCHHHHHHHHHHHHh
Confidence 44 35666777777544
No 82
>PRK10125 putative glycosyl transferase; Provisional
Probab=60.34 E-value=26 Score=36.13 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=49.9
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQI 359 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~ 359 (411)
.+..+.++.+...+.|.-......-+.|||++| +|||.+|-=-. .|+++=. -.+.++..|...|.+.
T Consensus 298 ~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G-~PVVat~~gG~--~Eiv~~~-~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 298 RKLMSALNQMDALVFSSRVDNYPLILCEALSIG-VPVIATHSDAA--REVLQKS-GGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHHhCCEEEECCccccCcCHHHHHHHcC-CCEEEeCCCCh--HHhEeCC-cEEEECCCCHHHHHhc
Confidence 456777888888888887777788999999999 58888874322 2445433 4778899998887763
No 83
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=57.05 E-value=76 Score=31.80 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=45.5
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCC-----CCCCCcEEEEEcccCHHHHHHHHhcC-
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFND-----ILDWRKFAVILNERDVYQLKQILKNI- 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~-----~idw~~fsV~v~e~~~~~l~~~L~~i- 363 (411)
+..+.|+.|...+...| ..-+.||+.+|+ |||+.+. .|-.+ .+.-..+.+.+ .+..++.+.+..+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~--~~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKP--VPGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCC--CCCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 35577888887665333 345889999995 6777542 12111 11122344433 4445554444443
Q ss_pred -CHHHHHHHHHHHHHh
Q 015235 364 -SDAEFVSLHNNLVKV 378 (411)
Q Consensus 364 -~~~~~~~mq~~l~~~ 378 (411)
.++...+|.++..++
T Consensus 337 ~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 337 QDDMKLLQMKEAMKSL 352 (380)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 466778888877654
No 84
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=54.32 E-value=17 Score=32.32 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY 330 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~ 330 (411)
..+...+..|..+++|...+..+..++|||.+|| |||.++.
T Consensus 173 ~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~~ 213 (229)
T cd01635 173 ELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATDV 213 (229)
T ss_pred HHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcCC
Confidence 3455556669999999988888999999999986 5555553
No 85
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=52.02 E-value=42 Score=32.88 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=51.6
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCcee-------cCCCCCCCCCcEEEEEccc--CHHHHHHH
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYD-------LPFNDILDWRKFAVILNER--DVYQLKQI 359 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~-------lPf~~~idw~~fsV~v~e~--~~~~l~~~ 359 (411)
.++.+.|..+...+++.|. .-+.|||.+|+ |||+.+.-. .+.+ .+......+.++.. +..++.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~-~l~~~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANAR-ALVKAGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHH-HHHhCCCEEEEecCCCCHHHHHHH
Confidence 3567788999999987762 34899999995 566543210 0111 22224556666655 66666655
Q ss_pred HhcC--CHHHHHHHHHHHHHh
Q 015235 360 LKNI--SDAEFVSLHNNLVKV 378 (411)
Q Consensus 360 L~~i--~~~~~~~mq~~l~~~ 378 (411)
++.+ .++...+|+++.++.
T Consensus 318 i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 318 LLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHhcCHHHHHHHHHHHHhc
Confidence 5544 456677787776543
No 86
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=48.17 E-value=1.6e+02 Score=29.36 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=51.9
Q ss_pred chhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCc-eecCCCCCCCCCcEEEEEcccCHHHHHHHHhcC--C
Q 015235 288 PLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNY-YDLPFNDILDWRKFAVILNERDVYQLKQILKNI--S 364 (411)
Q Consensus 288 ~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~-~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i--~ 364 (411)
..++...|+.+.+++.+.|. -+.||+.+| +|||.... -..| +.++ ....+.++ .+..+|.+.++.+ .
T Consensus 265 ~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g-~PvI~~~~~~~~~--e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~ 334 (365)
T TIGR00236 265 YLDFLNLAANSHLILTDSGG-----VQEEAPSLG-KPVLVLRDTTERP--ETVE-AGTNKLVG-TDKENITKAAKRLLTD 334 (365)
T ss_pred hHHHHHHHHhCCEEEECChh-----HHHHHHHcC-CCEEECCCCCCCh--HHHh-cCceEEeC-CCHHHHHHHHHHHHhC
Confidence 45677889999999887642 279999999 57887532 1122 3333 33444554 4555555544433 2
Q ss_pred HHHHHHHHHHHHHhhccceecCCCCCcCHHHHHHHHH
Q 015235 365 DAEFVSLHNNLVKVQKHFQWNSPPVRFDAFHMVMYEL 401 (411)
Q Consensus 365 ~~~~~~mq~~l~~~~~~f~y~~~~~~~DAf~~il~~l 401 (411)
++...+|.++. .+-+.++|-.-+++.|
T Consensus 335 ~~~~~~~~~~~----------~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 335 PDEYKKMSNAS----------NPYGDGEASERIVEEL 361 (365)
T ss_pred hHHHHHhhhcC----------CCCcCchHHHHHHHHH
Confidence 33333332221 1123456777666654
No 87
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=45.66 E-value=25 Score=35.99 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=49.5
Q ss_pred hHHhhccCceEEeecCCC-CCCchhHHHHHhhCceeEEEeCceecCCCCCC---CCCcEEEEEcccCHHHHHHHHhcC--
Q 015235 290 VYQRRFYKTKFCICPGGS-QVNSARIADSIHYGCVPVILSNYYDLPFNDIL---DWRKFAVILNERDVYQLKQILKNI-- 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~-~~~s~rl~dai~~GCIPVii~d~~~lPf~~~i---dw~~fsV~v~e~~~~~l~~~L~~i-- 363 (411)
+..+.++.+..++++... .....-+.||+++|| |||.+++.. -+.+.. .-..+.+ +..|..++.+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 455677888877765322 123445899999995 888765421 122221 1123333 344555555555443
Q ss_pred CHHHHHHHHHHHHHhhc
Q 015235 364 SDAEFVSLHNNLVKVQK 380 (411)
Q Consensus 364 ~~~~~~~mq~~l~~~~~ 380 (411)
.++...+|.++.++...
T Consensus 388 ~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 388 DPDARQAYGEAGVAFLK 404 (425)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 46667788877766543
No 88
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=40.87 E-value=81 Score=32.66 Aligned_cols=133 Identities=18% Similarity=0.236 Sum_probs=75.6
Q ss_pred CCccceeeeeccCCChH-HHHHHHHHhhcCCc---cccccccccc---CCCchhHHhhccCceEEeecCCCCCCchhHHH
Q 015235 244 VENRTVLGFWAGHRNSK-IRVILARVWENDTE---LDISNNRINR---AIGPLVYQRRFYKTKFCICPGGSQVNSARIAD 316 (411)
Q Consensus 244 ~~~R~~L~fFaG~~~~~-vR~~L~~~~~~~~~---~~i~~~~~~~---~~~~~~y~~~~~~S~FCL~p~G~~~~s~rl~d 316 (411)
-++|...+||.|...+. .|..|.+.-.+.++ ..+....... ...+..=.+...+-||-+...|.+. |.|+.-
T Consensus 154 W~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~~-S~Rlky 232 (395)
T PF05686_consen 154 WEDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNAW-SGRLKY 232 (395)
T ss_pred hhhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCcee-ehhHHH
Confidence 35677889999998644 59888876544332 1222111110 0001111344567889999999874 789988
Q ss_pred HHhhCceeEEEeCceecCCCC-CCCCCcEEEEEcc-cCHHHHHHHHhcC--CHHHHHHHHHHHHHh
Q 015235 317 SIHYGCVPVILSNYYDLPFND-ILDWRKFAVILNE-RDVYQLKQILKNI--SDAEFVSLHNNLVKV 378 (411)
Q Consensus 317 ai~~GCIPVii~d~~~lPf~~-~idw~~fsV~v~e-~~~~~l~~~L~~i--~~~~~~~mq~~l~~~ 378 (411)
-|.+|++.+.....|.-=|.+ ..+|.-|. -|.. ++..+|++.++=. .+++.+++-++..+.
T Consensus 233 lL~c~SvVl~~~~~~~e~f~~~L~P~vHYV-PV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f 297 (395)
T PF05686_consen 233 LLACNSVVLKVKSPYYEFFYRALKPWVHYV-PVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRF 297 (395)
T ss_pred HHcCCceEEEeCCcHHHHHHhhhcccccEE-EeccccchhhHHHHhhhcccChHHHHHHHHHHHHH
Confidence 899999988876544333332 34666653 3444 3444444443322 244555555555543
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.87 E-value=63 Score=36.10 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=54.5
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCH------HHHHHHHhcC
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDV------YQLKQILKNI 363 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~------~~l~~~L~~i 363 (411)
+....+..+...+.|.-.+....-++|||.+| +|||.++.-- ..++|.=..-.+.++..|. ..|.+++...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G-~PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSG-VPVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcC-CeEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 45566778888788865666788999999999 5888877422 2344433444556665543 2344444443
Q ss_pred CHHHHHHHHHHHHH-hhccceecC
Q 015235 364 SDAEFVSLHNNLVK-VQKHFQWNS 386 (411)
Q Consensus 364 ~~~~~~~mq~~l~~-~~~~f~y~~ 386 (411)
.. -.+|+++.++ +.++|.|..
T Consensus 661 ~~--~~~l~~~ar~~a~~~FS~~~ 682 (694)
T PRK15179 661 AA--DPGIARKAADWASARFSLNQ 682 (694)
T ss_pred hc--cHHHHHHHHHHHHHhCCHHH
Confidence 21 2244555443 455666543
No 90
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=37.28 E-value=1.1e+02 Score=32.82 Aligned_cols=97 Identities=11% Similarity=0.257 Sum_probs=60.1
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeC----ceecCCCCCCCC----CcEEEEEcccCHHHHHHHHh
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSN----YYDLPFNDILDW----RKFAVILNERDVYQLKQILK 361 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d----~~~lPf~~~idw----~~fsV~v~e~~~~~l~~~L~ 361 (411)
-+.+..+.|.+=|+|.=+.|-.-.-..||..|||||+-.. +-+.++++ | ..--+.+.+.+...+...|+
T Consensus 361 la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~---~~~~~~gtGf~f~~~~~~~l~~al~ 437 (487)
T COG0297 361 LAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNE---WLIQGVGTGFLFLQTNPDHLANALR 437 (487)
T ss_pred HHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccc---hhccCceeEEEEecCCHHHHHHHHH
Confidence 3556778999999998777777778889999999998765 35555543 4 23334444445555444332
Q ss_pred ------cCCHHHHHHHHHHHHHhhccceecCCCCCc
Q 015235 362 ------NISDAEFVSLHNNLVKVQKHFQWNSPPVRF 391 (411)
Q Consensus 362 ------~i~~~~~~~mq~~l~~~~~~f~y~~~~~~~ 391 (411)
..++.....+|++... ..|-|+.+..+|
T Consensus 438 rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y 471 (487)
T COG0297 438 RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEY 471 (487)
T ss_pred HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHH
Confidence 2233334444444433 567777765554
No 91
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=37.16 E-value=21 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.0
Q ss_pred ccchhhHHHHHHHHHHHHHh
Q 015235 17 CSLRSSLLTLALVTLLCFTC 36 (411)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (411)
+.|+-|||+|-||.++|+.+
T Consensus 1 ftlKKsllLlfflG~ISlSl 20 (46)
T PF03032_consen 1 FTLKKSLLLLFFLGTISLSL 20 (46)
T ss_pred CcchHHHHHHHHHHHcccch
Confidence 35788999999998888754
No 92
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=35.31 E-value=93 Score=35.37 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=53.7
Q ss_pred hhHHhhccCceEEeecCCCCCCchhHHHHHhhCcee----EEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHh---
Q 015235 289 LVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVP----VILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILK--- 361 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIP----Vii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~--- 361 (411)
.++...++.+.-|++|.=.....--..|||++|+ | +|+++--=-+ +.+ ..-++.|+..|..++.+.+.
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~-p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL 441 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQK-AKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEAL 441 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeec-CCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHH
Confidence 5677889999999998744444566899999998 5 7777632111 112 34588899888887655442
Q ss_pred cCCHHHHHHHHHHHHH
Q 015235 362 NISDAEFVSLHNNLVK 377 (411)
Q Consensus 362 ~i~~~~~~~mq~~l~~ 377 (411)
..++++..++.+.+.+
T Consensus 442 ~m~~~er~~r~~~~~~ 457 (797)
T PLN03063 442 NMSDEERETRHRHNFQ 457 (797)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 2355555444444433
No 93
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.64 E-value=47 Score=34.83 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=33.2
Q ss_pred CeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 89 FKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 89 ~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
-|||+...| |..++|-+| .+...|.+.+| .|+++++||+++|-..+
T Consensus 7 ~~~~i~t~G----------C~~N~~ds~-~~~~~l~~~G~~~~~~~~~ADiiiiNTC~ 53 (448)
T PRK14333 7 RSYWITTFG----------CQMNKADSE-RMAGILEDMGYQWAEDELQADLVLYNTCT 53 (448)
T ss_pred cEEEEEEcC----------CCCcHHHHH-HHHHHHHHCcCEECCCcccCCEEEEEeee
Confidence 378887666 345777777 34455667777 78899999999997653
No 94
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=33.95 E-value=22 Score=34.40 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=11.2
Q ss_pred hCCCeeeEecCCC
Q 015235 86 VTNFKIYIYPDGD 98 (411)
Q Consensus 86 ~~~~kVYVY~~g~ 98 (411)
|+++|||||+++.
T Consensus 2 ~~~lkVYVY~lp~ 14 (302)
T PF03016_consen 2 HRGLKVYVYPLPP 14 (302)
T ss_pred CCCCEEEEEeCCc
Confidence 6789999999874
No 95
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=33.57 E-value=35 Score=25.45 Aligned_cols=15 Identities=40% Similarity=0.529 Sum_probs=12.3
Q ss_pred chhhHHHHHHHHHHH
Q 015235 19 LRSSLLTLALVTLLC 33 (411)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (411)
.|++|||.|+|+|-+
T Consensus 1 MR~~lLf~aiLalsl 15 (59)
T PF03823_consen 1 MRSTLLFAAILALSL 15 (59)
T ss_pred ChhHHHHHHHHHHHH
Confidence 478999999998754
No 96
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=33.05 E-value=1.4e+02 Score=30.57 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=54.8
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCC---CC------CCCCcEEEEEcccC--HHHHHH
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFN---DI------LDWRKFAVILNERD--VYQLKQ 358 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~---~~------idw~~fsV~v~e~~--~~~l~~ 358 (411)
+..+.|+.|.-++|=.|.+ -+.|..+.| +|+|+- .+|.. +. +-=...+..+++++ ..++.+
T Consensus 245 dm~~~~~~ADLvIsRaGa~----Ti~E~~a~g-~P~Ili---P~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~ 316 (357)
T COG0707 245 DMAALLAAADLVISRAGAL----TIAELLALG-VPAILV---PYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316 (357)
T ss_pred hHHHHHHhccEEEeCCccc----HHHHHHHhC-CCEEEe---CCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHH
Confidence 4667889999999987754 378877766 899873 23332 00 11135688898888 345666
Q ss_pred HHhcC--CHHHHHHHHHHHHHh
Q 015235 359 ILKNI--SDAEFVSLHNNLVKV 378 (411)
Q Consensus 359 ~L~~i--~~~~~~~mq~~l~~~ 378 (411)
.|.++ +++++.+|.++.+.+
T Consensus 317 ~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 317 LILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHhcCHHHHHHHHHHHHhc
Confidence 66555 368999998888765
No 97
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=32.71 E-value=44 Score=33.36 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=48.3
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCC----CCCCcE------------E--EEEccc
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDI----LDWRKF------------A--VILNER 351 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~----idw~~f------------s--V~v~e~ 351 (411)
+..+.++.+..++++.|. -..||+.+|| |||+.... -||... .....+ . +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 345678899999998653 3459999995 77776432 122200 001111 1 112333
Q ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHhhccc
Q 015235 352 DVYQLKQILKNI--SDAEFVSLHNNLVKVQKHF 382 (411)
Q Consensus 352 ~~~~l~~~L~~i--~~~~~~~mq~~l~~~~~~f 382 (411)
+..+|.+.+..+ .++...+|.++..++.+.+
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 444555544443 4666778888877666554
No 98
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=31.82 E-value=60 Score=34.04 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.4
Q ss_pred hhCCCeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEe
Q 015235 85 MVTNFKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIP 142 (411)
Q Consensus 85 ~~~~~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP 142 (411)
|-...|||+...| |..+++-+| .+...|.+.+| .|++|++||+++|-
T Consensus 4 ~~~~~~~~i~t~G----------C~~N~~dse-~~~~~l~~~G~~~~~~~~~aD~ivin 51 (440)
T PRK14862 4 MTAAPKIGFVSLG----------CPKALVDSE-RILTQLRAEGYEISPSYDGADLVIVN 51 (440)
T ss_pred CCCCCEEEEEEcC----------CCCcHHHHH-HHHHHHHHCcCEECCCcccCCEEEEe
Confidence 3345588888776 335677777 34445666777 77889999999997
No 99
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.19 E-value=61 Score=34.12 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=26.5
Q ss_pred cccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 108 KLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 108 ~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|..++|-+|. +...|.+.+| .|.+|++||+.+|-..+
T Consensus 10 C~~N~~dse~-~~~~l~~~G~~~~~~~~~ADv~iiNTC~ 47 (455)
T PRK14335 10 CQMNVAESAS-MEQLLLARGWTKAVDAETCDVLIINTCS 47 (455)
T ss_pred CCCcHHHHHH-HHHHHHHCcCEECCCcccCCEEEEeccc
Confidence 3467777773 4445666666 78899999999987653
No 100
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=29.26 E-value=44 Score=31.24 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=28.4
Q ss_pred CceEEeecCCCCCCchhHHHHHhhCceeEEEe
Q 015235 297 KTKFCICPGGSQVNSARIADSIHYGCVPVILS 328 (411)
Q Consensus 297 ~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~ 328 (411)
..+|||+..|.+-+-...|||=..+.|||+-.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 67899999998888889999999999999854
No 101
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.01 E-value=72 Score=33.36 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=31.3
Q ss_pred eeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 90 KIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 90 kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|||+...| |..+++-+|. +...|.+.+| .|+++++||+.+|-..+
T Consensus 2 ~~~i~t~G----------C~~N~~ds~~-~~~~l~~~G~~~~~~~~~ADi~iiNTC~ 47 (440)
T PRK14334 2 KAHIITYG----------CQMNEYDTHL-VESELVSLGAEIVDSVDEADFVLVNTCA 47 (440)
T ss_pred eEEEEecC----------CCCcHHHHHH-HHHHHHHCcCEECCCcccCCEEEEeccc
Confidence 56666555 3467777773 4446666777 78889999999987653
No 102
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.45 E-value=71 Score=33.56 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=32.2
Q ss_pred eeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 90 KIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 90 kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|||+-..| |..+++-+|. +...|.+.+| .|+++++||+++|-..+
T Consensus 8 ~~~i~tlG----------C~~N~~dse~-~~~~l~~~G~~~~~~~~~ADviiiNTC~ 53 (445)
T PRK14340 8 KFYIHTFG----------CQMNQADSEI-ITALLQDEGYVPAASEEDADIVLLNTCA 53 (445)
T ss_pred EEEEEecC----------CCCcHHHHHH-HHHHHHHCcCEECCCcccCCEEEEEeee
Confidence 57777666 3457777773 4445666776 78889999999997653
No 103
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.80 E-value=78 Score=33.05 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=31.5
Q ss_pred eeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 90 KIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 90 kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|||+...| |..+++-+|. +...|.+.+| .|.++++||+.+|-..+
T Consensus 2 ~~~i~t~G----------C~~N~~ds~~-~~~~l~~~G~~~~~~~~~aDviiiNTC~ 47 (437)
T PRK14331 2 KYYIKTFG----------CQMNFNDSEK-IKGILQTLGYEPADDWEEADLILVNTCT 47 (437)
T ss_pred EEEEEecC----------CCCcHHHHHH-HHHHHHHCcCEECCCcccCCEEEEeCcc
Confidence 56776655 3457777773 4445666776 78889999999987654
No 104
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.41 E-value=78 Score=33.38 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=32.2
Q ss_pred CeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 89 FKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 89 ~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
.|+|+...| |..+++-+|. +...|.+.+| .|++|++||+++|-..+
T Consensus 21 ~~~~i~t~G----------C~~N~~dse~-~~~~l~~~G~~~~~~~~~AD~~iiNTC~ 67 (459)
T PRK14338 21 RRYYVWTVG----------CQMNVSDSER-LEAALQGVGYSPAERPEDADFIVLNSCS 67 (459)
T ss_pred CEEEEEecC----------CCCCHHHHHH-HHHHHHHCcCEECCCcccCCEEEEeccc
Confidence 467777665 3457777773 4445666677 78889999999987653
No 105
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.74 E-value=95 Score=32.70 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 87 TNFKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 87 ~~~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
+..|||+...| |..+++-+|. +...|.+.+| .|.++++||+.+|-..+
T Consensus 9 ~~~~~~i~t~G----------C~~N~~dse~-~~~~l~~~G~~~~~~~~~ADvviiNTC~ 57 (449)
T PRK14332 9 KLGKVYIETYG----------CQMNEYDSGI-VSSLMRDAEYSTSNDPENSDIIFLNTCA 57 (449)
T ss_pred CCCEEEEEecC----------CCCCHHHHHH-HHHHHHHCcCEECCCcccCCEEEEEccC
Confidence 45788888766 2356666763 3455666776 67899999999987654
No 106
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=25.37 E-value=1.8e+02 Score=25.17 Aligned_cols=73 Identities=23% Similarity=0.197 Sum_probs=44.1
Q ss_pred hHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCC--CcEEEEEcccCHHHHHHHHhc
Q 015235 290 VYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDW--RKFAVILNERDVYQLKQILKN 362 (411)
Q Consensus 290 ~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw--~~fsV~v~e~~~~~l~~~L~~ 362 (411)
+|...-.+.|..||.+|.-........|..+|..-|||.++-.-+.....+. .--++.|..++-.+|.+.|.+
T Consensus 40 d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 40 DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC
Confidence 3443334688899988875445567788999999999976432221111111 113556666666666666654
No 107
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.07 E-value=87 Score=32.72 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=31.1
Q ss_pred eeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 90 KIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 90 kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|||+...| |..+||-+|. +...|.+.+| .|+++++||+++|-..+
T Consensus 3 ~~~~~t~G----------C~~N~~ds~~-~~~~l~~~G~~~~~~~~~ADv~iiNTC~ 48 (439)
T PRK14328 3 KYFIETYG----------CQMNEEDSEK-LAGMLKSMGYERTENREEADIIIFNTCC 48 (439)
T ss_pred EEEEEEeC----------CCCCHHHHHH-HHHHHHHCcCEECCCcCcCCEEEEeccc
Confidence 46666555 3467777773 4445666666 78889999999997654
No 108
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.58 E-value=1.1e+02 Score=32.28 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=26.7
Q ss_pred cccCCchhHHHHHHHHhhCCC--cCCCcCCccEEEEeccc
Q 015235 108 KLTGKYASEGYFFQNIRESRF--LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 108 ~~t~~y~~E~~f~~~L~~S~~--~T~dP~eA~lFyvP~~~ 145 (411)
|..+.|-+| .+...|+..+| .|+||+|||+.++-..+
T Consensus 12 C~~N~~DSe-~m~~~L~~~G~~~~~~~~~eADvviiNTC~ 50 (437)
T COG0621 12 CQMNLYDSE-RMAGLLEAAGYEELVEDPEEADVVIINTCA 50 (437)
T ss_pred CCccHHHHH-HHHHHHHHcCCccccCCcccCCEEEEecCe
Confidence 346778787 34445555566 89999999999987653
No 109
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.26 E-value=96 Score=32.27 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=30.8
Q ss_pred eeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 90 KIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 90 kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|||+...| |..+++-+|. +...|++.+| .|.++++||+++|-...
T Consensus 3 ~~~i~t~G----------C~~N~~dse~-~~~~l~~~G~~~~~~~~~AD~viiNTC~ 48 (418)
T PRK14336 3 GYYLWTIG----------CQMNQAESER-LGRLFELWGYSLADKAEDAELVLVNSCV 48 (418)
T ss_pred eEEEEecC----------CCCcHHHHHH-HHHHHHHCcCEECCCcccCCEEEEeccc
Confidence 56666554 3467777773 4445666666 78889999999987653
No 110
>PLN02275 transferase, transferring glycosyl groups
Probab=23.93 E-value=1.4e+02 Score=30.05 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=29.7
Q ss_pred chhHHhhccCceEEeecCCC---CCCchhHHHHHhhCceeEEEeC
Q 015235 288 PLVYQRRFYKTKFCICPGGS---QVNSARIADSIHYGCVPVILSN 329 (411)
Q Consensus 288 ~~~y~~~~~~S~FCL~p~G~---~~~s~rl~dai~~GCIPVii~d 329 (411)
..++.+.++.+..++.|... ......++|||++| +|||.++
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G-~PVVa~~ 340 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCG-LPVCAVS 340 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCC-CCEEEec
Confidence 45677889999998875321 11355799999999 5888876
No 111
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=23.66 E-value=95 Score=32.26 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=26.8
Q ss_pred cccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 108 KLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 108 ~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
|..+||-+| .+...|++.+| .|.++++||+++|-..+
T Consensus 9 C~~N~~ds~-~~~~~l~~~G~~~~~~~~~ADviiinTC~ 46 (420)
T TIGR01578 9 CTLNNGDSE-IMKNSLAAYGHELVNNAEEADLAILNTCT 46 (420)
T ss_pred CCCcHHHHH-HHHHHHHHCCCEECCCcccCCEEEEEeee
Confidence 346777777 34445666777 78889999999987654
No 112
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=23.49 E-value=39 Score=33.97 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCCCchhHHHHHhhCceeEEEeCceecCCCCCCCCCcEEEEEcccCHHHHHHHHhcCCHHHHHHHHHHH
Q 015235 305 GGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNISDAEFVSLHNNL 375 (411)
Q Consensus 305 ~G~~~~s~rl~dai~~GCIPVii~d~~~lPf~~~idw~~fsV~v~e~~~~~l~~~L~~i~~~~~~~mq~~l 375 (411)
.|-+...+.+++.+.---|+|=+|---.--|.|+++++++-|....+....|.+.=|+++++++.++.++.
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC
Confidence 46667788999999888888887766667788999999999999999999999999999999999998874
No 113
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=23.30 E-value=1.4e+02 Score=29.98 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=44.7
Q ss_pred hhHHhhccCceEEeecC------CCCCCchhHHHHHhhCceeEEEeC-----ceecCCCCCCCCCcEEEEEcccCHHHHH
Q 015235 289 LVYQRRFYKTKFCICPG------GSQVNSARIADSIHYGCVPVILSN-----YYDLPFNDILDWRKFAVILNERDVYQLK 357 (411)
Q Consensus 289 ~~y~~~~~~S~FCL~p~------G~~~~s~rl~dai~~GCIPVii~d-----~~~lPf~~~idw~~fsV~v~e~~~~~l~ 357 (411)
.+-++.|+.|-|-..-. |+...-..-.|.+++|.|||+=-. .+.+-=...+|-..-+|..+|.|+..-.
T Consensus 265 ~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ 344 (355)
T PF11440_consen 265 SEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTV 344 (355)
T ss_dssp HHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHH
T ss_pred HHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHH
Confidence 45677899999987532 333223446799999999998432 1233333446666778999999998766
Q ss_pred HHHhcC
Q 015235 358 QILKNI 363 (411)
Q Consensus 358 ~~L~~i 363 (411)
+.|..+
T Consensus 345 ekl~E~ 350 (355)
T PF11440_consen 345 EKLIEV 350 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 114
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=22.80 E-value=1.8e+02 Score=31.57 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=33.9
Q ss_pred CchhHHhhccCceEEeecCCCCCCchhHHHHHhhCceeEEEeCceecC
Q 015235 287 GPLVYQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLP 334 (411)
Q Consensus 287 ~~~~y~~~~~~S~FCL~p~G~~~~s~rl~dai~~GCIPVii~d~~~lP 334 (411)
...+|.++|++||-=+ =-|+-.-++.=+|||..|| |+|...+..|
T Consensus 331 ~~~ef~~lL~~akvfi-GlGfP~EgPaPlEAia~G~--vFlNp~~~pp 375 (559)
T PF15024_consen 331 SGDEFQQLLRKAKVFI-GLGFPYEGPAPLEAIANGC--VFLNPRFNPP 375 (559)
T ss_pred CHHHHHHHHHhhhEee-ecCCCCCCCChHHHHHcCC--ccccccCCCC
Confidence 3468999999999644 3477777889999999999 5666655544
No 115
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=22.45 E-value=1.1e+02 Score=31.89 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=26.3
Q ss_pred cccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEecc
Q 015235 108 KLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPIS 144 (411)
Q Consensus 108 ~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~ 144 (411)
|..+|+-+| .+...|.+.+| .|+++++||+++|-..
T Consensus 9 C~~N~~ds~-~~~~~l~~~g~~~~~~~~~aD~v~intC 45 (429)
T TIGR00089 9 CQMNEADSE-IMAGLLKEAGYEVTDDPEEADVIIINTC 45 (429)
T ss_pred CCCcHHHHH-HHHHHHHHCcCEECCCcccCCEEEEecc
Confidence 346777777 34555666777 7788999999999754
No 116
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=21.45 E-value=1.1e+02 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.1
Q ss_pred cccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEecc
Q 015235 108 KLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPIS 144 (411)
Q Consensus 108 ~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~ 144 (411)
|..+||-+| .+.+.|.+.+| .|.|+++||+.+|-..
T Consensus 9 C~~N~~ds~-~~~~~l~~~g~~~~~~~~~aD~viinTC 45 (430)
T TIGR01125 9 CPKNLVDSE-VMLGILREAGYEVTPNYEDADYVIVNTC 45 (430)
T ss_pred CCCcHHHHH-HHHHHHHHCcCEECCCcccCCEEEEeCC
Confidence 346777776 34455666666 7888999999999754
No 117
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.09 E-value=1.3e+02 Score=31.70 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=32.5
Q ss_pred CeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCC-cCCCcCCccEEEEeccc
Q 015235 89 FKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRF-LTHDPDRAHLFFIPISC 145 (411)
Q Consensus 89 ~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~-~T~dP~eA~lFyvP~~~ 145 (411)
.|||+...| |..+++-+| .+...|++.+| .|.++++||+.+|-..+
T Consensus 24 ~~~~i~t~G----------C~~N~~dse-~~~~~l~~~G~~~~~~~~~ADiviiNTC~ 70 (467)
T PRK14329 24 KKLFIESYG----------CQMNFADSE-IVASILQMAGYNTTENLEEADLVLVNTCS 70 (467)
T ss_pred CEEEEEecC----------CCCcHHHHH-HHHHHHHHCcCEECCCcccCCEEEEeCcc
Confidence 467887666 346777776 34445666667 77889999999987654
No 118
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.51 E-value=1.3e+02 Score=31.53 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=32.3
Q ss_pred CeeeEecCCCCCccccCCccccCCchhHHHHHHHHhhCCCcCCCcCCccEEEEeccc
Q 015235 89 FKIYIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFLTHDPDRAHLFFIPISC 145 (411)
Q Consensus 89 ~kVYVY~~g~~~~~~~~~~~~t~~y~~E~~f~~~L~~S~~~T~dP~eA~lFyvP~~~ 145 (411)
.|||+...| |..+++-+| .+...|++.+|...++++||+++|-..+
T Consensus 4 ~~~~i~tlG----------C~~N~~dse-~~~~~l~~~G~~~~~~~~ADiiiiNTC~ 49 (446)
T PRK14337 4 RTFHIITFG----------CQMNVNDSD-WLARALVARGFTEAPEEEARVFIVNTCS 49 (446)
T ss_pred cEEEEEeeC----------CCCcHHHHH-HHHHHHHHCCCEECCcCCCCEEEEeccC
Confidence 478887666 346777777 3445567777866667999999987653
Done!