Query 015238
Match_columns 411
No_of_seqs 244 out of 1767
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 04:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02498 omega-3 fatty acid de 100.0 6.1E-90 1.3E-94 694.9 34.5 399 1-410 1-403 (450)
2 PLN02505 omega-6 fatty acid de 100.0 3.4E-61 7.4E-66 483.0 31.5 307 100-409 22-345 (381)
3 PLN02598 omega-6 fatty acid de 100.0 1E-56 2.3E-61 455.8 28.6 296 105-410 74-372 (421)
4 cd03507 Delta12-FADS-like The 100.0 1.6E-40 3.5E-45 313.2 18.6 220 125-393 1-222 (222)
5 cd03511 Rhizopine-oxygenase-li 100.0 1.5E-38 3.2E-43 310.7 24.0 268 121-408 8-277 (285)
6 COG3239 DesA Fatty acid desatu 100.0 6E-39 1.3E-43 320.3 21.7 277 108-407 15-299 (343)
7 PF11960 DUF3474: Domain of un 100.0 1.1E-37 2.5E-42 262.9 9.9 130 1-145 1-135 (136)
8 PLN03198 delta6-acyl-lipid des 100.0 7.8E-35 1.7E-39 304.0 20.8 282 110-407 188-491 (526)
9 PLN03199 delta6-acyl-lipid des 100.0 8.7E-34 1.9E-38 295.1 21.7 293 111-407 114-447 (485)
10 cd03506 Delta6-FADS-like The D 100.0 8.8E-35 1.9E-39 270.8 11.5 197 160-407 3-202 (204)
11 cd03514 CrtR_beta-carotene-hyd 100.0 1.4E-33 2.9E-38 263.4 17.5 187 151-407 18-205 (207)
12 cd03508 Delta4-sphingolipid-FA 100.0 2.5E-31 5.4E-36 259.1 19.6 250 120-406 9-260 (289)
13 cd03509 DesA_FADS-like Fatty a 100.0 6.6E-31 1.4E-35 256.5 21.2 223 160-408 30-261 (288)
14 cd03510 Rhizobitoxine-FADS-lik 100.0 6E-32 1.3E-36 245.9 13.0 170 137-400 1-175 (175)
15 PF00487 FA_desaturase: Fatty 100.0 1.8E-31 3.9E-36 251.0 13.1 244 154-408 3-250 (257)
16 PLN02579 sphingolipid delta-4 100.0 1.6E-29 3.5E-34 249.5 21.2 261 100-400 15-282 (323)
17 cd03513 CrtW_beta-carotene-ket 100.0 1.9E-29 4.1E-34 237.3 19.2 188 158-396 33-224 (225)
18 KOG4232 Delta 6-fatty acid des 99.9 1.5E-25 3.2E-30 221.8 16.9 277 110-407 100-396 (430)
19 KOG2987 Fatty acid desaturase 99.9 2.8E-21 6E-26 179.1 15.5 265 98-402 9-282 (324)
20 cd03512 Alkane-hydroxylase Alk 99.8 8.2E-20 1.8E-24 180.6 9.4 220 153-405 68-290 (314)
21 cd01060 Membrane-FADS-like The 99.7 1.4E-17 3.1E-22 141.4 7.7 59 170-228 14-72 (122)
22 COG1398 OLE1 Fatty-acid desatu 98.5 8.2E-06 1.8E-10 77.8 17.5 52 175-227 66-118 (289)
23 PLN02220 delta-9 acyl-lipid de 98.3 1.3E-05 2.8E-10 78.9 14.2 48 178-226 80-127 (299)
24 KOG1600 Fatty acid desaturase 97.7 0.00069 1.5E-08 66.2 13.8 48 178-227 91-139 (321)
25 cd03505 Delta9-FADS-like The D 97.2 0.0042 9.1E-08 56.7 11.0 47 179-226 28-74 (178)
26 PF13829 DUF4191: Domain of un 66.4 17 0.00037 34.4 6.3 57 110-167 9-65 (224)
27 PLN02601 beta-carotene hydroxy 60.9 23 0.0005 34.4 6.1 81 121-217 176-259 (303)
28 cd03513 CrtW_beta-carotene-ket 51.2 1.8E+02 0.0039 27.5 10.5 42 173-222 171-217 (225)
29 PF09396 Thrombin_light: Throm 49.3 7.3 0.00016 27.6 0.6 9 7-15 20-28 (49)
30 PLN02434 fatty acid hydroxylas 31.8 2.4E+02 0.0051 27.1 8.0 11 211-221 122-132 (237)
31 cd03509 DesA_FADS-like Fatty a 27.4 5E+02 0.011 25.4 9.8 13 210-222 230-242 (288)
32 PF00487 FA_desaturase: Fatty 23.4 1.5E+02 0.0033 26.8 5.1 11 211-221 220-230 (257)
No 1
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=6.1e-90 Score=694.88 Aligned_cols=399 Identities=81% Similarity=1.431 Sum_probs=352.9
Q ss_pred CccccccccCCCCCCCCCCCCCCCCC---C-CcccccCCccccccCCCCCcccCCCCCcCCcceeeeccccccccCCCch
Q 015238 1 MASWVLSECGLKPLPHIFPRPRTGIN---P-SKARFLHSKKSITDLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGED 76 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (411)
||+|||||||+||||++|++||+++. + ++.++.+.+...+...+. ..++++.|+|+|+++||+|++...+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T PLN02498 1 MASWVLSECGLRPLPRIYPRPRTGFISKNNLSKFRFLPSSKSYKRLPFD--LFSRGCSRERNWALNVSAPLTVPSGEEEE 78 (450)
T ss_pred CchhhhhhccCcccccccCCCccccccCCCccccccccccccccccccc--cccccccccccceeeecccCcccCCCcch
Confidence 99999999999999999999998863 2 245555444332112221 23466779999999999999976665542
Q ss_pred hhhhhccccccCCCCCCccccCCCCCCCCCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 015238 77 EEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVV 156 (411)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ir~~lpk~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~ 156 (411)
+++ +.++++ .+++.++|+.++|+||++|||++|||+||++|++|+++|+++|+++++++++++.+.++|++
T Consensus 79 ~~~---~~~~~~------~~~~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~ 149 (450)
T PLN02498 79 DEE---GVNGVG------EDEEGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVV 149 (450)
T ss_pred hhh---hhhhcc------cccccccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 222 222221 11234599999999999999999999999999999999999999999888888777888999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCccccccHHHH
Q 015238 157 WPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 236 (411)
Q Consensus 157 ~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~ 236 (411)
|+++|+++|++++++++++|||||+++|+++++|+++|.+++.++++|+..||.+|+.||++||+.++||++.|.++++|
T Consensus 150 wpl~w~~~G~~~~gL~vl~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y 229 (450)
T PLN02498 150 WPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 229 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 015238 237 RTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLK 316 (411)
Q Consensus 237 ~~l~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~ 316 (411)
+.++...+.+++..+++++|+|+|++.+..++.++||+|.+++|.++||.++++|.+++++++++++.++..+|++.+++
T Consensus 230 ~~l~~~~~~~~~~~~~~~~g~p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~ 309 (450)
T PLN02498 230 KSLDKVTRTLRFTLPFPMLAYPFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLK 309 (450)
T ss_pred HhccccchHHHHHHHHHHHHHHHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 98877777777777778899999999999988899999999999999999999999999988888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccCcccccccCCCCCccCHHHH
Q 015238 317 LYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEA 396 (411)
Q Consensus 317 l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~ninyHveHHLfP~IP~y~Lp~a 396 (411)
+|++|++++++|++++||+||+++++++|+|+++||++.|++++|+||+|||+|+++|||++|+.||+||+||+|||+||
T Consensus 310 ~Y~vP~lv~~~WL~~iTyLhHt~~~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I~tHV~HHlf~~IPhYhl~eA 389 (450)
T PLN02498 310 LYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEA 389 (450)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcchhhccceeecCcccchhhhhcCcccchhhhccCCCCCcCHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhChhhhcC
Q 015238 397 VSIFSVDQPTVLNH 410 (411)
Q Consensus 397 ~~~lk~~~p~~l~~ 410 (411)
++++|+.++++|.+
T Consensus 390 t~aiK~~lg~yy~e 403 (450)
T PLN02498 390 TEAAKPVLGKYYRE 403 (450)
T ss_pred HHHHHHHhHHheec
Confidence 99999999998864
No 2
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=3.4e-61 Score=482.97 Aligned_cols=307 Identities=39% Similarity=0.728 Sum_probs=267.0
Q ss_pred CCCCCCCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHH-Hh---h---HHHHHHHHHHHHHHHHHHHh
Q 015238 100 EFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAA-YL---N---NWVVWPLYWAAQGTMFWALF 172 (411)
Q Consensus 100 ~~~~~~~~~~~l~~ir~~lpk~~f~~~~~r~~~~l~~~~~li~~~~~~a~-~~---~---~w~~~~l~~~~~G~~~~~l~ 172 (411)
+..+.++|++|++|||++|||+||++|++|++.++++|+++++++++++. +. + .|++|+++|+++|+++.+++
T Consensus 22 ~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~ 101 (381)
T PLN02505 22 KRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVW 101 (381)
T ss_pred ccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999988766554 22 2 24567888999999999999
Q ss_pred hhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCccccccHHHHhhchh-----hhhhHH
Q 015238 173 VLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDS-----ATRFLR 247 (411)
Q Consensus 173 ~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l~~-----~~r~lr 247 (411)
+++|||+|+++|+++++|+++|.+++.++++|+..||.+|+.||++||+.++|+++.|.+.+++..... ..++.+
T Consensus 102 vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~~~~~~~~~p~~~~~~ 181 (381)
T PLN02505 102 VIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSALPWYSKYLNNPPGRLLH 181 (381)
T ss_pred HHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCcCHHHHhHHHHHhcChHHHHHH
Confidence 999999999999999999999999998999999999999999999999999999999877665442211 112211
Q ss_pred hhhhhhHHHHHHHHHHhCCC----CCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 015238 248 FKIPFPLLAYPFYLWSRSPG----KTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYW 323 (411)
Q Consensus 248 ~~~~~~ll~~p~yl~~r~~g----~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~l 323 (411)
......+|+|+|++.+..+ +.++||+|.+++|.++||.+++++.++.++++++++.+...+|++.++++|++|++
T Consensus 182 -~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G~~~~l~~y~vP~l 260 (381)
T PLN02505 182 -IVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKGLAWVLCVYGVPLL 260 (381)
T ss_pred -HHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1123457889988765444 34689999999999999999999999888887777766777899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccC-cccccccCCCCCccCHHHHHHHhhh
Q 015238 324 IFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEAVSIFSV 402 (411)
Q Consensus 324 v~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~nin-yHveHHLfP~IP~y~Lp~a~~~lk~ 402 (411)
++++|++++||+||+ ++++|+|+++||++.++++.|+|++|+|++++++||+ +|++||+||+||+|||+||++.+|+
T Consensus 261 v~~~wlv~itylqHt--~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv~HHl~srIP~Y~l~eA~~aik~ 338 (381)
T PLN02505 261 IVNAFLVLITYLQHT--HPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKP 338 (381)
T ss_pred HHHHHHHHHHHHhcc--CCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccchhhccCCCCCCCHHHHHHHHHH
Confidence 999999999999999 5779999999999999999999999999999999997 9999999999999999999999999
Q ss_pred hChhhhc
Q 015238 403 DQPTVLN 409 (411)
Q Consensus 403 ~~p~~l~ 409 (411)
.++++++
T Consensus 339 ~lg~~y~ 345 (381)
T PLN02505 339 ILGEYYQ 345 (381)
T ss_pred HhHHHhc
Confidence 9999876
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=1e-56 Score=455.81 Aligned_cols=296 Identities=29% Similarity=0.560 Sum_probs=249.9
Q ss_pred CCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCc
Q 015238 105 APPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFS 184 (411)
Q Consensus 105 ~~~~~~l~~ir~~lpk~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~ 184 (411)
.||++|++|||++||++||++|++|++.+++.+++++++++++ ....+|+.++++++++|+.+.++++++|||+|+++|
T Consensus 74 ~~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~-~~~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~ 152 (421)
T PLN02598 74 LPDNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAA-IAVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFS 152 (421)
T ss_pred CCCCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 4589999999999999999999999999999999887554433 333457888999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHh
Q 015238 185 NDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSR 264 (411)
Q Consensus 185 ~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l~~~~r~lr~~~~~~ll~~p~yl~~r 264 (411)
+++++|+++|.++++++++|+..||.+|+.||++||+.++|||+.|.++++|+..+.+.+.. . ...+| |+|++..
T Consensus 153 ~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l---~-~~~~G-P~yl~~~ 227 (421)
T PLN02598 153 KNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAM---M-RAGMG-PLWWWAS 227 (421)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHhhcCHHHHHH---H-HHhHh-HHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888765544422 1 12355 7777654
Q ss_pred CCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 015238 265 SPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMA-ALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDK 343 (411)
Q Consensus 265 ~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~-a~l~~l~~~~g~~~~l~l~~lP~lv~~~~l~~v~~l~H~g~~~~ 343 (411)
.......||++. .|+++|+.+++++.++.+++. +++..+....|.+.++.+|++|++++++|+++++++||. +++
T Consensus 228 ~~~~~~~hf~~~--~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~it~lhHt--~p~ 303 (421)
T PLN02598 228 IGHWLFWHFDLN--KFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHT--APH 303 (421)
T ss_pred hhcceeeccCcc--cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCC
Confidence 322234677663 488889989988887665543 333333455788888999999999999999999999998 567
Q ss_pred CCCCCCCccccccccee-eeccccc-cccccccccCcccccccCCCCCccCHHHHHHHhhhhChhhhcC
Q 015238 344 LPWYRGKEWSYLRGGLT-TLDRDYG-WFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSVDQPTVLNH 410 (411)
Q Consensus 344 ~p~~~~~ew~~~r~~~~-Tid~~~g-wln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~~~p~~l~~ 410 (411)
+|+++++||++.+++++ |++++++ |++++++|||||++||+||+||+||||++++.+|+.+++++++
T Consensus 304 ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~~~g~~y~~ 372 (421)
T PLN02598 304 IPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKHLNK 372 (421)
T ss_pred CCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHHHhcccccc
Confidence 99998999999999986 9999887 7799999999999999999999999999999999999998775
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=1.6e-40 Score=313.22 Aligned_cols=220 Identities=48% Similarity=0.992 Sum_probs=175.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhhccCC
Q 015238 125 KDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVP 204 (411)
Q Consensus 125 ~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p 204 (411)
++.++++.++++|++++++++.++....+|++++++++++|+.+.++++++|||+|+++++++++|+++|.+++.+++.|
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p 80 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCC
Confidence 46789999999999998887776655567888889999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHhhhccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchh
Q 015238 205 YHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSE 284 (411)
Q Consensus 205 ~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~e 284 (411)
+..||..|+.||+++|+.++|+|+.|.+++++.......+ |. .
T Consensus 81 ~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~~~~~~~~---y~-----------~----------------------- 123 (222)
T cd03507 81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRLP---YR-----------L----------------------- 123 (222)
T ss_pred hHHHHHHHHHHHhccCCCCCCCcccCcCHHHhhcccccch---HH-----------H-----------------------
Confidence 9999999999999999999999999877666553321110 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccccce-eeec
Q 015238 285 RKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGL-TTLD 363 (411)
Q Consensus 285 r~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~-~Tid 363 (411)
..+. +.+.. .+..+.+ ..+ ++++|++|+++.++|++++++++|. ++++|++++++|++.+.|+ +|+|
T Consensus 124 ~~~~----~~~~~-~g~~~~~--~~~---~~~~~~ip~l~~~~~l~~~t~l~H~--~~~~~~~~~~~w~~~~~q~~~t~~ 191 (222)
T cd03507 124 YRNP----FLMLS-LGWPYYL--LLN---VLLYYLIPYLVVNAWLVLITYLQHT--FPDIPWYRADEWNFAQAGLLGTVD 191 (222)
T ss_pred HHHH----HHHHH-HHHHHHH--HHH---HHHHHHhHHHHHHHHHHeeeEecCC--CCCCCCcCccccchhhhcceeeee
Confidence 0000 00000 0000000 111 6779999999999999999999999 4568999888999866665 5888
Q ss_pred cccc-cccccccccCcccccccCCCCCccCH
Q 015238 364 RDYG-WFNNIHHDIGTHVIHHLFPQIPHYHL 393 (411)
Q Consensus 364 ~~~g-wln~l~~ninyHveHHLfP~IP~y~L 393 (411)
++++ |++++++|+|||+|||+||+||+|+|
T Consensus 192 ~~~~~~~~~l~~~i~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 192 RDYGGWLNWLTHIIGTHVAHHLFPRIPHYNL 222 (222)
T ss_pred ccccHHHHHHhcCCCcccchhcCCCCCcCcC
Confidence 7775 77999999999999999999999986
No 5
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=1.5e-38 Score=310.71 Aligned_cols=268 Identities=19% Similarity=0.198 Sum_probs=186.0
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhh
Q 015238 121 HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSS 200 (411)
Q Consensus 121 ~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~ 200 (411)
++.++|+++++..++.++++++++++++.+..+++..+++.+++|+.+.+++.++|||+|++++++|++|+++|.+++.+
T Consensus 8 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~ 87 (285)
T cd03511 8 QLMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGLM 87 (285)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHH
Confidence 35678999999999999998877665554333333334445678999999999999999999999999999999998899
Q ss_pred ccCChHHhHHHHhhhccCCCCCCCCCcccc-ccHHHHhhchhhhhhHH-hhhhhhHHHHHHHHHHhCCCCCccccCCCCC
Q 015238 201 ILVPYHGWRISHRTHHQNHGHVENDESWHP-LSEKIYRTLDSATRFLR-FKIPFPLLAYPFYLWSRSPGKTGSHFDPNSD 278 (411)
Q Consensus 201 ~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p-~~~~~~~~l~~~~r~lr-~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~ 278 (411)
++.|+..||..|+.||+++|+.++|||... .++. +.+.+. +............++....+.. ...+ +.
T Consensus 88 ~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~-------~~~~~~~~~g~~~~~~~l~~~~~~~~~~~--~~~~-~~ 157 (285)
T cd03511 88 ILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPT-------LREYLLALSGLPYWWGKLRTVFRHAFGAV--SEAE-KP 157 (285)
T ss_pred hcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchH-------HHHHHHHHhChHHHHHHHHHHHHHHhccc--cccc-CC
Confidence 999999999999999999999899999742 2211 111111 0000000000000110000000 0000 11
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccccc
Q 015238 279 LFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGG 358 (411)
Q Consensus 279 lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~ 358 (411)
.+.++++++++.+..+++++++++++++...|++.++++|++|++++..++.+++++||.+++++ +++ .+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~~~~~eH~~~~~~-----~~~---~~~- 228 (285)
T cd03511 158 FIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRLFLLAEHGGCPED-----AND---LRN- 228 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-----cch---hhh-
Confidence 12234456666666666666666666666678878888999999998888889999999975421 111 111
Q ss_pred eeeeccccccccccccccCcccccccCCCCCccCHHHHHHHhhhhChhhh
Q 015238 359 LTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSVDQPTVL 408 (411)
Q Consensus 359 ~~Tid~~~gwln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~~~p~~l 408 (411)
++|+..+ +|++++++|+|||+|||+||+||+|+||++|+.+|+.+|.+.
T Consensus 229 trs~~~~-~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~~ 277 (285)
T cd03511 229 TRTTLTN-PPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDLPVPY 277 (285)
T ss_pred hhhhhhh-HHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhCCCCC
Confidence 2343222 577999999999999999999999999999999999998664
No 6
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=6e-39 Score=320.27 Aligned_cols=277 Identities=29% Similarity=0.465 Sum_probs=193.5
Q ss_pred CCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCC
Q 015238 108 PFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDH 187 (411)
Q Consensus 108 ~~~l~~ir~~lpk~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~ 187 (411)
..+++.+++.+||+|++++..+....++...+++++++....++++|+.++++++++|+++.++++++|||+||+++|++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r 94 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNR 94 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Confidence 45788999999999999988888777777777666665555666668888898889999999999999999999999999
Q ss_pred hhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCccccccHHHHhhchhhhh--hHHh---hhhhhHHHHHHHHH
Q 015238 188 KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATR--FLRF---KIPFPLLAYPFYLW 262 (411)
Q Consensus 188 ~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l~~~~r--~lr~---~~~~~ll~~p~yl~ 262 (411)
|+|+++|++++++.+.|+..||.+|+.||++||+.++|||.. ...+...+ .+++ ..+..+++..
T Consensus 95 ~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~-------~~~~~~~~~~~l~~~~i~~~~~~~~~~---- 163 (343)
T COG3239 95 WINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPETY-------VSYPEQLRRGPLRFQLIRLPWLAFGFG---- 163 (343)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHHH-------HhCchhhhhhhHHHHHHHHHHHHHhhh----
Confidence 999999999999888999999999999999999988886642 11111111 1111 1122222211
Q ss_pred HhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHHHHHHhhccCCCC
Q 015238 263 SRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLY-GLPYWIFVMWLDLVTYLHHHGHE 341 (411)
Q Consensus 263 ~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~-~lP~lv~~~~l~~v~~l~H~g~~ 341 (411)
+.....++...++.+.+.++...+.......+.+++ .....+..+| ++|+++.+.|...+++.+|. +
T Consensus 164 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~l~~~~~~~p~l~~~~~~~~~~~~~h~-~- 231 (343)
T COG3239 164 ---PRWALLHFELLEKLFKRSGKAPKAAALATLLAAIGL-------AALLALAFFWGLIPLLLVGLWLVLVLFVHHT-F- 231 (343)
T ss_pred ---hhhhhhhhhhhhhccCCcccchHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHHHHHHHHHhhcc-c-
Confidence 111111121111223333233332222221111111 1112233445 68999999999999999998 4
Q ss_pred CCCCCCCCCccccccccee-eeccccc-cccccccccCcccccccCCCCCccCHHHHHHHhhhhChhh
Q 015238 342 DKLPWYRGKEWSYLRGGLT-TLDRDYG-WFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSVDQPTV 407 (411)
Q Consensus 342 ~~~p~~~~~ew~~~r~~~~-Tid~~~g-wln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~~~p~~ 407 (411)
+.+++..+++|++...++. |++.+++ +++++++|+|||+|||+||+||+|+||++++.+|+.+++.
T Consensus 232 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~ 299 (343)
T COG3239 232 DLLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEALGER 299 (343)
T ss_pred ccccccccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHHcCcC
Confidence 3467766677766555553 4455555 6799999999999999999999999999999999999943
No 7
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.1e-37 Score=262.88 Aligned_cols=130 Identities=72% Similarity=1.205 Sum_probs=105.0
Q ss_pred CccccccccCCCCCCCCCCCCCCCC----CCCcccccCCccccc-cCCCCCcccCCCCCcCCcceeeeccccccccCCCc
Q 015238 1 MASWVLSECGLKPLPHIFPRPRTGI----NPSKARFLHSKKSIT-DLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGE 75 (411)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (411)
||+||||||||||||++|++||+++ +++++++.+.+.... +.. ..++.+.++|+|++|||+|+++++++||
T Consensus 1 MAswVLSECGlrPLp~iy~~pr~~~~s~~~~~~~r~~~~~~~~~~~~~----~~~~~~~~~r~w~l~VsaP~~~~~~~~e 76 (136)
T PF11960_consen 1 MASWVLSECGLRPLPRIYPRPRTGFISSTNPSKLRFLPSSKSVNLDSS----SPSSSGFRRRNWALNVSAPLRVPSVEEE 76 (136)
T ss_pred CcceeecccCCCcCccccCCCCCcccccCCCCccccCCcccccccccc----ccccccccccCcceeeeccCcccccccc
Confidence 9999999999999999999999997 355677766654422 222 1335568889999999999999999877
Q ss_pred hhhhhhccccccCCCCCCccccCCCCCCCCCCCCCHHHHHHHccccccccCcchhHHHHHHHHHHHHHHH
Q 015238 76 DEEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLA 145 (411)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ir~~lpk~~f~~~~~r~~~~l~~~~~li~~~~ 145 (411)
+++ +.+. .+.++.+|||++|||||++|||++||||||++|+||+++|+++|++++++++
T Consensus 77 -~~~----~~~~------~~~~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 77 -EEE----VSSN------KEEEEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred -hhh----cccc------ccccccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 322 1111 1334567999999999999999999999999999999999999999988875
No 8
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=7.8e-35 Score=303.97 Aligned_cols=282 Identities=18% Similarity=0.227 Sum_probs=182.9
Q ss_pred CHHHHHHHcc-ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCCh
Q 015238 110 KLADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (411)
Q Consensus 110 ~l~~ir~~lp-k~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~ 188 (411)
..+++|+.+. ...|++++.+....++..++++++++++.+...+++...+.++++|+.+.++++++|||+|++++++++
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s~~~~~~ 267 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQVFETRW 267 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcH
Confidence 3668888864 588999998877777666555555444433333333344555678999999999999999999999999
Q ss_pred hHHHHHHHHH-hhccCChHHhHHHHhhhccCCCCCC-----CCCcccccc-----HHHHhhc--hhhhhhHHhhhhh--h
Q 015238 189 LNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVE-----NDESWHPLS-----EKIYRTL--DSATRFLRFKIPF--P 253 (411)
Q Consensus 189 lN~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~~~-----~Dpd~~p~~-----~~~~~~l--~~~~r~lr~~~~~--~ 253 (411)
+|+++|.+++ .++|.|+.+||.+|+.||.+||..+ +|||+...+ ++..+.. ..+.++.+++.++ +
T Consensus 268 ~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~~~~~~~~yQh~~f~~ 347 (526)
T PLN03198 268 LNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENKTFLRILQYQHLFFMA 347 (526)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhhhHHHHHhhhhHHHHH
Confidence 9999999976 4689999999999999999999987 799986442 1111111 1111222232211 1
Q ss_pred HH---HHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHH
Q 015238 254 LL---AYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGL-SFVMGPMQLLKLYGLPYWIFVMWL 329 (411)
Q Consensus 254 ll---~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l-~~~~g~~~~l~l~~lP~lv~~~~l 329 (411)
++ ...+++.. . .+.. .+...++++...+ +..++.++..+.+ +.+.+.+..+.++++..++.++++
T Consensus 348 ll~l~~~~~~~~s--~-----~~~~-~~~~~~~~~~~e~---~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~~g~~l 416 (526)
T PLN03198 348 LLFFARGSWLFWS--W-----RYTS-TAKLAPADRLLEK---GTILFHYFWFIGTACYLLPGWKPLVWMAVTELMCGMLL 416 (526)
T ss_pred HHHHHHHHHHHHH--H-----HHHh-ccccchHHHHHHH---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 11 11111110 0 0000 0000111222222 2222222222222 333455556667778888999999
Q ss_pred HHHHhhccCCCCCCCCCCCCCccccccccee-eecccc-ccccccccccCcccccccCCCCCccCHHHHHHHhhhhChhh
Q 015238 330 DLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSVDQPTV 407 (411)
Q Consensus 330 ~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~-Tid~~~-gwln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~~~p~~ 407 (411)
.++++++|.+++ +... ++ ++.+.|+. |.|... .|++|++||+|||+||||||+||++|||++++++|+.|++.
T Consensus 417 ~~vF~lnH~~~~--v~~~-~~--dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~i~piVk~~C~k~ 491 (526)
T PLN03198 417 GFVFVLSHNGME--VYNK-SK--EFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNKIAPQVEAFCIKH 491 (526)
T ss_pred HhhhhccccCCC--CCCC-Cc--CHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHHHhHHHHHHHHHc
Confidence 999999999754 3321 22 56666764 544432 46799999999999999999999999999999999999974
No 9
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=295.07 Aligned_cols=293 Identities=15% Similarity=0.122 Sum_probs=184.9
Q ss_pred HHHHHHHcc-ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCChh
Q 015238 111 LADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKL 189 (411)
Q Consensus 111 l~~ir~~lp-k~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~l 189 (411)
.+++|+.+. ...|+++++.....++..+++++++.+++.+.++++...++++++|+.+.+++.++|||+|+++++++++
T Consensus 114 y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l~HDa~H~~~~~~~~~ 193 (485)
T PLN03199 114 YRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRKH 193 (485)
T ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCchH
Confidence 568888886 3889999877665555555555555444444556655666777889999999999999999999999999
Q ss_pred HHHHHHHHH-hhccCChHHhHHHHhhhccCCCC-------CCCCCccccc-----cHHH---Hhhc------hhhhhh-H
Q 015238 190 NSVVGHLLH-SSILVPYHGWRISHRTHHQNHGH-------VENDESWHPL-----SEKI---YRTL------DSATRF-L 246 (411)
Q Consensus 190 N~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~-------~~~Dpd~~p~-----~~~~---~~~l------~~~~r~-l 246 (411)
|+++|.+++ +++|.|..+|+.+|+.||++||. .++|||+... +++. ++.. ....++ .
T Consensus 194 N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
T PLN03199 194 GDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKDSGFVKFAI 273 (485)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccccchhhHHH
Confidence 999998876 56899999999999999999997 3689997422 1111 1111 001111 1
Q ss_pred Hhhh--hhhHHH-HHHHHHHhC----CCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHH-HHH--hchhHHHH
Q 015238 247 RFKI--PFPLLA-YPFYLWSRS----PGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGL-SFV--MGPMQLLK 316 (411)
Q Consensus 247 r~~~--~~~ll~-~p~yl~~r~----~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l-~~~--~g~~~~l~ 316 (411)
+++. .++++. ..+.+...+ ............+ ..+++........++.++.++..+.+ +.+ .+++..+.
T Consensus 274 ~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~~~~~~l~ 352 (485)
T PLN03199 274 KFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALE-LEAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFAYSAF 352 (485)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 2221 112221 111111110 0000000000000 11122222223223333333322222 112 44555667
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccccee-eecccc------ccccccccccCcccccccCCCCC
Q 015238 317 LYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY------GWFNNIHHDIGTHVIHHLFPQIP 389 (411)
Q Consensus 317 l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~-Tid~~~------gwln~l~~ninyHveHHLfP~IP 389 (411)
++++..++.++++.+++.++|.+++ ++. +++.-++.+.|++ |.|.+. .|++||+|++|||+||||||+||
T Consensus 353 ~~~~~~~~~g~~l~~~f~l~H~~~~--~~~-~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGLN~QIEHHLFP~mp 429 (485)
T PLN03199 353 YFFTATASCGFFLAIVFGLGHNGMA--TYD-ADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFPMLP 429 (485)
T ss_pred HHHHHHHHHhhHheEEEecCCcccc--ccC-CCCCccHHHHHHHhccCccCCCCCcchHHHHHhccchhhhhhhcCCCCc
Confidence 8888888899999999999999753 221 2222245566764 555431 37899999999999999999999
Q ss_pred ccCHHHHHHHhhhhChhh
Q 015238 390 HYHLIEAVSIFSVDQPTV 407 (411)
Q Consensus 390 ~y~Lp~a~~~lk~~~p~~ 407 (411)
++|||++.+++|+.|++.
T Consensus 430 ~~~y~~i~piVk~~C~k~ 447 (485)
T PLN03199 430 RHNIAKCHALVESFCKEW 447 (485)
T ss_pred hhhHHhhhHHHHHHHHHh
Confidence 999999999999999974
No 10
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=8.8e-35 Score=270.83 Aligned_cols=197 Identities=17% Similarity=0.181 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCccccccHHHHhhc
Q 015238 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTL 239 (411)
Q Consensus 160 ~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l 239 (411)
+++++|+...+++.++|||+|+++++++++|+++|.+++.++|.|+..||.+|+.||++||+.++|||+.+.+...+..
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~- 81 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARSE- 81 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEecc-
Confidence 3456788888999999999999999999999999999999999999999999999999999999999986532100000
Q ss_pred hhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 015238 240 DSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYG 319 (411)
Q Consensus 240 ~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~ 319 (411)
.. . ...+..+.......+. + . .+.... +.+|+
T Consensus 82 ----~~---------------~-----------------~~~~~~~~~~~~q~~~----~-~--~~~~~~-----~~~~~ 113 (204)
T cd03506 82 ----PA---------------F-----------------GKDQKKRFLHRYQHFY----F-F--PLLALL-----LLAFL 113 (204)
T ss_pred ----cc---------------c-----------------ccchHHHHHHHHHHHH----H-H--HHHHHH-----HHHHH
Confidence 00 0 0000011111111110 0 0 010000 66899
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCC-CCCccccccccee-eecccc-ccccccccccCcccccccCCCCCccCHHHH
Q 015238 320 LPYWIFVMWLDLVTYLHHHGHEDKLPWY-RGKEWSYLRGGLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIEA 396 (411)
Q Consensus 320 lP~lv~~~~l~~v~~l~H~g~~~~~p~~-~~~ew~~~r~~~~-Tid~~~-gwln~l~~ninyHveHHLfP~IP~y~Lp~a 396 (411)
+|+++++.+++++++++|.+.+ ++++ +++++++.+.|++ |+|... .|++++++|+|||+||||||+||+++||++
T Consensus 114 ~~~~~~~~~l~~~~~~~H~~~~--~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~~ 191 (204)
T cd03506 114 VVQLAGGLWLAVVFQLNHFGMP--VEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPKV 191 (204)
T ss_pred HHHHHHhhhhheEeeccccccc--ccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHHHH
Confidence 9999999999999999999643 5553 4567788777774 666544 478999999999999999999999999999
Q ss_pred HHHhhhhChhh
Q 015238 397 VSIFSVDQPTV 407 (411)
Q Consensus 397 ~~~lk~~~p~~ 407 (411)
++++|+.|+|.
T Consensus 192 ~~~v~~~~~~~ 202 (204)
T cd03506 192 APLVRELCKKH 202 (204)
T ss_pred HHHHHHHHHHh
Confidence 99999999985
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=1.4e-33 Score=263.35 Aligned_cols=187 Identities=24% Similarity=0.327 Sum_probs=139.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCcccc
Q 015238 151 LNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 230 (411)
Q Consensus 151 ~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p 230 (411)
...|+.++++.++.|+.+.++++++|||+|++++++|++|+++|.+++.+++.|+..||.+|+.||+++|+.++|||+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~- 96 (207)
T cd03514 18 VISYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF- 96 (207)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH-
Confidence 3445555666677788899999999999999999999999999999998999999999999999999999989999964
Q ss_pred ccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015238 231 LSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMG 310 (411)
Q Consensus 231 ~~~~~~~~l~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g 310 (411)
+.+. . + ....+++ +++...+..+
T Consensus 97 --------------~~~~-----------~---------------------------~--~~~~~~~---~~~~~~~~~~ 119 (207)
T cd03514 97 --------------LLEW-----------L---------------------------V--ARSLFIT---LLVIAILFGF 119 (207)
T ss_pred --------------HHHH-----------H---------------------------H--HHHHHHH---HHHHHHHHHH
Confidence 0000 0 0 0001111 1111112344
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccCcccccccCCCCC
Q 015238 311 PMQLLKLYGLPYWIFVMWLDL-VTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIP 389 (411)
Q Consensus 311 ~~~~l~l~~lP~lv~~~~l~~-v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~ninyHveHHLfP~IP 389 (411)
.+.++++|++|.++.+.++.+ .++++|.+.++ +++|+..+ + ....+++++++|+|||.|||+||+||
T Consensus 120 ~~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~~~------~~~~~~~~----~--~~~~l~~~l~~~~nyH~~HHL~P~IP 187 (207)
T cd03514 120 LWELLNLWFLPALIVGTYLALFFDWLPHHPFEE------TQRWDNSR----V--YPSKLLNPLIMGQNYHLVHHLWPSIP 187 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeCccCCCC------ccchhhhh----c--ccchhHheeecCCchhHHHhCCCCCc
Confidence 456778999999999888885 56888886432 23343322 1 11135699999999999999999999
Q ss_pred ccCHHHHHHHhhhhChhh
Q 015238 390 HYHLIEAVSIFSVDQPTV 407 (411)
Q Consensus 390 ~y~Lp~a~~~lk~~~p~~ 407 (411)
+||||++++.+|+...++
T Consensus 188 ~y~Lp~a~~~~~~~~~~~ 205 (207)
T cd03514 188 WYRYPEAYYANKPLLDAR 205 (207)
T ss_pred hhhhHHHHHHhHHHHhhc
Confidence 999999999999877654
No 12
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=99.98 E-value=2.5e-31 Score=259.14 Aligned_cols=250 Identities=19% Similarity=0.195 Sum_probs=152.6
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHH
Q 015238 120 KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVW-PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLH 198 (411)
Q Consensus 120 k~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~-~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~ 198 (411)
|++|++|++.....++...+.++++.++ ...+|+.. ++++++.|+++.++++++|||+|+++|+++++|+++|.+++
T Consensus 9 ~~L~~~~~~~~~~~~~~v~~~~~~~~~l--~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~~ 86 (289)
T cd03508 9 KKLFGPDPLTKWVVLGVVLLQIITAYLL--RDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFAN 86 (289)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHHH
Confidence 4788999988777766665555443222 23356544 44555678888999999999999999999999999999988
Q ss_pred hhccCChH-HhHHHHhhhccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCC
Q 015238 199 SSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNS 277 (411)
Q Consensus 199 ~~~g~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~ 277 (411)
.+++.|+. .||..|+.||+++|+.+.|||+.+..+ ++-.+.... + .+....+++++..|...+ .
T Consensus 87 ~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~--~~l~~~~~g--~---~~~~~~~~~~~~~rp~~~---~----- 151 (289)
T cd03508 87 LPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFE--GKLFSTVLG--K---AIWVTLQPFFYALRPLFV---R----- 151 (289)
T ss_pred HHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHH--HHHHhCchH--H---HHHHHHHHHHHHhccccc---C-----
Confidence 89999998 699999999999999889999875221 111111100 0 010111233333332111 0
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccc
Q 015238 278 DLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRG 357 (411)
Q Consensus 278 ~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~ 357 (411)
.++.++.. +.+.+..+++. +.+...+|++.++ |+++..+.+.. -| +...+...|+|+....
T Consensus 152 --~~~~~~~~-~~n~~~~~~~~---~~l~~~~G~~~~l--yll~~~~~~~~-------~~----p~~g~~i~Eh~~~~~~ 212 (289)
T cd03508 152 --PKPPTRLE-VINIVVQITFD---YLIYYFFGWKSLA--YLLLGSFLGGG-------LH----PLAGHFISEHYVFTGK 212 (289)
T ss_pred --CCcchhHH-HHHHHHHHHHH---HHHHHHhCcHHHH--HHHHHHHHHHh-------hc----cccccccccccccccc
Confidence 01112222 23333222222 2234556775443 44444332221 01 1122222344443321
Q ss_pred ceeeeccccccccccccccCcccccccCCCCCccCHHHHHHHhhhhChh
Q 015238 358 GLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSVDQPT 406 (411)
Q Consensus 358 ~~~Tid~~~gwln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~~~p~ 406 (411)
...|.+ .|+|+|++++|+|||.|||+||+||+|+||++++..++..++
T Consensus 213 ~~~t~S-~y~~~~~~~~n~~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~~ 260 (289)
T cd03508 213 GQETYS-YYGPLNLLTFNVGYHNEHHDFPYIPGTRLPKLRKIAPEFYDN 260 (289)
T ss_pred CcCCcc-chHHHHHHhhccChHHHhcCCCCCCcccHHHHHHHCHHHHhC
Confidence 112322 138899999999999999999999999999999997766554
No 13
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=6.6e-31 Score=256.48 Aligned_cols=223 Identities=21% Similarity=0.225 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCC--CCCCCCccccccHHHHh
Q 015238 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHG--HVENDESWHPLSEKIYR 237 (411)
Q Consensus 160 ~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn--~~~~Dpd~~p~~~~~~~ 237 (411)
+.++.|......++++|||+|+++||++++|+++|.++ ..++.|+..||.+|+.||+++| +.++|||....+.++++
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~ 108 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWA 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHHh
Confidence 34456777777789999999999999999999999885 4566999999999999999998 44689998777777888
Q ss_pred hchhhhhhH-Hh-hhhhhHHHH-HHHH---HHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhch
Q 015238 238 TLDSATRFL-RF-KIPFPLLAY-PFYL---WSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGP 311 (411)
Q Consensus 238 ~l~~~~r~l-r~-~~~~~ll~~-p~yl---~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~ 311 (411)
++..+++.. +. ..+...+.+ |.+. ..+... ..+.++++..+.......+..+++++.+....|+
T Consensus 109 ~~~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (288)
T cd03509 109 RLPRWQRALLRANNTLLGRLILGPPLGLIAFARDEF----------RALRAGDRAALRAWLLHAALLAPLLAWLQLSAGI 178 (288)
T ss_pred hCcHHHHHHHHHhhcchhHHhhhhHHHHHHHHHHHH----------HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 776664433 21 122211111 2221 122110 1122333322211111001111111122222232
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccCcccccccCCCCCc
Q 015238 312 MQLLKLYGLPYWI-FVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPH 390 (411)
Q Consensus 312 ~~~l~l~~lP~lv-~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~ninyHveHHLfP~IP~ 390 (411)
. .++|++|... ......+.++.||.+.++ + .+.+.+++.+ ++++++++|+|||+|||++|+||+
T Consensus 179 -~-~~~~~l~~~~la~~~~~~~~~~Eh~~~~~--~----------~~rs~~~~~~-~~~~~l~~ninyH~~HH~~P~vP~ 243 (288)
T cd03509 179 -P-WWAYLLAVYYPALSLAKIRTFLEHRAHER--P----------RGRTVINEAG-GPLRLLFLNNNLHVVHHDLPTLPW 243 (288)
T ss_pred -H-HHHHHHHHHHHHHHHHhhchHhhccCCCC--c----------cCCceeeeCc-HHHHHHHhcCCchHhhcCCCCCCc
Confidence 2 2334454433 444455677888885321 1 0111122332 467999999999999999999999
Q ss_pred cCHHHHHHHhhhhChhhh
Q 015238 391 YHLIEAVSIFSVDQPTVL 408 (411)
Q Consensus 391 y~Lp~a~~~lk~~~p~~l 408 (411)
|+||++++.+++.++++.
T Consensus 244 y~Lp~~h~~~~~~~~~~~ 261 (288)
T cd03509 244 YDLPRLYRARRDAYLRRN 261 (288)
T ss_pred ccHHHHHHHhHHHHhhcC
Confidence 999999999999988754
No 14
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=6e-32 Score=245.91 Aligned_cols=170 Identities=29% Similarity=0.443 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHH-HhhccCChHHhHHHHhhh
Q 015238 137 DVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLL-HSSILVPYHGWRISHRTH 215 (411)
Q Consensus 137 ~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~-~~~~g~p~~~wr~~H~~H 215 (411)
||++++++++++.+.++|++++++++++|.++.++++++|||+|++++|++++|+++|.++ +.|+++|+..||..|+.|
T Consensus 1 ~w~~i~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~H 80 (175)
T cd03510 1 DWLVIAAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKH 80 (175)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 4567777777777788898888888899999999999999999999999999999999865 568999999999999999
Q ss_pred ccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHH
Q 015238 216 HQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCW 295 (411)
Q Consensus 216 H~~tn~~~~Dpd~~p~~~~~~~~l~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~ 295 (411)
|+++|+ ++|||..
T Consensus 81 H~~~~~-~~Dpd~~------------------------------------------------------------------ 93 (175)
T cd03510 81 HRHLGT-EDDPDLA------------------------------------------------------------------ 93 (175)
T ss_pred hCccCC-CCCCcHH------------------------------------------------------------------
Confidence 999998 8999842
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-HHHHhhccCCCCCCCCCCCCCcccccccceeeecccccccc-ccc
Q 015238 296 TAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWL-DLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFN-NIH 373 (411)
Q Consensus 296 ~~~~a~l~~l~~~~g~~~~l~l~~lP~lv~~~~l-~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln-~l~ 373 (411)
.++++|++|+++....+ .+.+..+|.++++. ++.. ..+++|+. .+|++ ++.
T Consensus 94 -----------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~~~-----~~~~---~~~tr~~~--~~~~~r~l~ 146 (175)
T cd03510 94 -----------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVPAD-----EDPD---ARNTRTTF--GGWIERLLF 146 (175)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----Ccch---hhcCcccc--ccHHHHHHH
Confidence 23556788887766533 45567899975431 1110 12223442 25664 554
Q ss_pred --cccCcccccccCCCCCccCHHHHHHHh
Q 015238 374 --HDIGTHVIHHLFPQIPHYHLIEAVSIF 400 (411)
Q Consensus 374 --~ninyHveHHLfP~IP~y~Lp~a~~~l 400 (411)
.|+|||.|||+||+||+|+|||+|+.+
T Consensus 147 ~p~~~~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 147 APHNINYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred cccCCcHHHHHhCCcCCchhhHHHHHHhC
Confidence 599999999999999999999999864
No 15
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=1.8e-31 Score=250.96 Aligned_cols=244 Identities=28% Similarity=0.429 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCccccccH
Q 015238 154 WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSE 233 (411)
Q Consensus 154 w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~ 233 (411)
|+.+++++++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||+++|+.++|||..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 44555666778888999999999999999999999999999999999999999999999999999999888999764311
Q ss_pred HHHhhchhhhhhHHhhhhh--hHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhch
Q 015238 234 KIYRTLDSATRFLRFKIPF--PLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGP 311 (411)
Q Consensus 234 ~~~~~l~~~~r~lr~~~~~--~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~ 311 (411)
...+.........++...+ ..+....+......... ........+...+...+ .++...++++.+...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (257)
T PF00487_consen 83 PPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKRR-------MRRRRKRPRRYLILAAL-LLALLLALLAALFFFSP 154 (257)
T ss_pred hhhhhhhhhhhhhhccccccccccccchhhhhhccccc-------cccccccchhHHHHHHH-hhhhhhhhhhhhccccc
Confidence 1111111111111111110 00000000000000000 00000010111122222 22222222222334455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccccee-eecc-ccccccccccccCcccccccCCCCC
Q 015238 312 MQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDR-DYGWFNNIHHDIGTHVIHHLFPQIP 389 (411)
Q Consensus 312 ~~~l~l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~-Tid~-~~gwln~l~~ninyHveHHLfP~IP 389 (411)
+.++++|++|.++...++.++++++|.+.+. .+ .++..+....++. +.+. ...|++++++|+|||+|||+||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~vp 231 (257)
T PF00487_consen 155 WWALLLFLLPFLIGSFFLAFVTYLEHYGLDP-DD--NEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPGVP 231 (257)
T ss_pred ccchhHHHHHHhHHHHHHHHhhHHhhhcccc-cc--cccccceecccccccccccCchhhhccccCCCChHHhCCCCCcC
Confidence 6678889999999888888889999997542 11 1222233333332 2222 2257799999999999999999999
Q ss_pred ccCHHHHHHHhhhhChhhh
Q 015238 390 HYHLIEAVSIFSVDQPTVL 408 (411)
Q Consensus 390 ~y~Lp~a~~~lk~~~p~~l 408 (411)
+++||++++.+++.|+++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~ 250 (257)
T PF00487_consen 232 WYNLPEAHPILKEVCPEYG 250 (257)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999763
No 16
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.97 E-value=1.6e-29 Score=249.48 Aligned_cols=261 Identities=20% Similarity=0.209 Sum_probs=150.7
Q ss_pred CCCCCCCCCCC-HHHHHHHcc--ccccccCcchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHH-HHHHHHHHHHHHhh
Q 015238 100 EFDPGAPPPFK-LADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAY--LNNWVVWPL-YWAAQGTMFWALFV 173 (411)
Q Consensus 100 ~~~~~~~~~~~-l~~ir~~lp--k~~f~~~~~r~~~~l~~~~~li~~~~~~a~~--~~~w~~~~l-~~~~~G~~~~~l~~ 173 (411)
.+...++|.-+ .++|.++.| ++++..|+..-...++ . +++..+++.+ ..+|+.+++ ++++.|+...++++
T Consensus 15 ~w~~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~-~---v~~~~~~~~l~~~~~w~~~l~~a~~~~g~~~~~lf~ 90 (323)
T PLN02579 15 FWSYTDEPHASRRREILSKYPQIKELFGPDPWAFPKIAA-V---VLLQLCTATLLHDAGWPKILLVAYFFGGFLNHNLFL 90 (323)
T ss_pred eECCchhhHHHHHHHHHHhchHhhcccCCCchHHHHHHH-H---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666654 457767777 3677777654332221 1 1111122222 256766555 44566777789999
Q ss_pred hhccccCCCCcCCChhHHHHHHHHHhhccCChH-HhHHHHhhhccCCCCCCCCCccccccHHHHhhchhhhhhHHhhhhh
Q 015238 174 LGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPF 252 (411)
Q Consensus 174 l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~l~~~~r~lr~~~~~ 252 (411)
++|||+|+++|+++++|+++|.++++++|.|+. +||..|+.||+++|+.+.|||.... .+++-.+ ..+. ..+
T Consensus 91 ~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~--~E~~l~~---~~~~--~~~ 163 (323)
T PLN02579 91 AIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQ--GEARLVR---NTLS--KIV 163 (323)
T ss_pred HHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCch--hhHHHHH---HHHH--HHH
Confidence 999999999999999999999999889999998 7999999999999998999997532 2332111 1110 001
Q ss_pred hHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015238 253 PLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLV 332 (411)
Q Consensus 253 ~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~lv~~~~l~~v 332 (411)
..+..++++..| +.. +.+ .+.+++.+ ++.++. +++.+.+.+..|+..++ +.++|. .++..+
T Consensus 164 ~~~~~~~f~~~r-p~~----~~~-----~~~~~~~~-in~~~~---~~~~~~l~~~~G~~~ll-yl~~~~-~~~~~l--- 224 (323)
T PLN02579 164 WVFLQLFFYALR-PLF----VNP-----KPPGLWEF-INLLTQ---IAFDAALVYFAGWKSLA-YLILST-FLGGGL--- 224 (323)
T ss_pred HHHHHHHHHHhh-HHh----hcc-----CCchHHHH-HHHHHH---HHHHHHHHHHHCHHHHH-HHHHHH-HHhccc---
Confidence 112224433333 110 111 11223332 333322 22233445566765543 222222 221111
Q ss_pred HhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccCcccccccCCCCCccCHHHHHHHh
Q 015238 333 TYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIF 400 (411)
Q Consensus 333 ~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~ninyHveHHLfP~IP~y~Lp~a~~~l 400 (411)
.+..++...++|.....+- |.. -||++|++++|+|||.|||+||+||+|+||+++++.
T Consensus 225 --------hp~~g~~~~ehy~~~~~~e-tys-yyg~ln~l~~NigYH~eHH~fP~IP~~~Lp~l~~~~ 282 (323)
T PLN02579 225 --------HPMAGHFISEHYVFNPGQE-TYS-YYGPLNLLTWNVGYHNEHHDFPRIPGSKLHKVKEIA 282 (323)
T ss_pred --------ccccceeeccceeccCCCC-cee-ehhHHHHHhhcccccHhhcCCCCCchhhHHHHHHhC
Confidence 1111211122222222221 322 248999999999999999999999999999977744
No 17
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.97 E-value=1.9e-29 Score=237.31 Aligned_cols=188 Identities=22% Similarity=0.313 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCc-CCChhHHHHHHHHH-hhccCChHHhHHHHhhhccCCCCCCCCCccccccHHH
Q 015238 158 PLYWAAQGTMFWALFVLGHDCGHGSFS-NDHKLNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKI 235 (411)
Q Consensus 158 ~l~~~~~G~~~~~l~~l~HDa~H~s~~-~~~~lN~~vG~l~~-~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~ 235 (411)
+++++++|+.+.++++++|||+|++++ +++++|+++|.+++ ++.+.|+..||..|..||+++|+. +|||+.+.++.
T Consensus 33 ~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~~~- 110 (225)
T cd03513 33 AAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGNPS- 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCCCC-
Confidence 344567899999999999999999999 79999999999985 678999999999999999999996 99999764320
Q ss_pred HhhchhhhhhHHhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 015238 236 YRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLL 315 (411)
Q Consensus 236 ~~~l~~~~r~lr~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l 315 (411)
+..+++.. +.+. | + ...+++.-.++| .+ +....-.+...++
T Consensus 111 --------~~~~wy~~----------f~~~-------y------~---~~~qli~l~ivw----~~-~l~~~~~~~~~~~ 151 (225)
T cd03513 111 --------GFLPWYLH----------FMSN-------Y------F---GWRQLAILAAVW----LL-LLGLGSAPLANLL 151 (225)
T ss_pred --------ChHHHHHH----------HHHh-------H------h---HHHHHHHHHHHH----HH-HHHHHcccHHHHH
Confidence 01111100 0000 0 0 011121111111 11 1111113556789
Q ss_pred HHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCCCcccccccceeeeccccccccccc-cccCcccccccCCCCCccCH
Q 015238 316 KLYGLPYWIFVMWLDLV-TYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIH-HDIGTHVIHHLFPQIPHYHL 393 (411)
Q Consensus 316 ~l~~lP~lv~~~~l~~v-~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~-~ninyHveHHLfP~IP~y~L 393 (411)
++|++|.++.++++.++ |++.|.. ++.|..+ + + +.+|++. .+|+++++ .++|||.|||+||+||||+|
T Consensus 152 ~~~~~P~l~~~~~l~~f~T~lpH~~--~~~~~~~---~---~-~a~~~~~-~~~~~~l~c~~fgyH~eHH~fP~~Pw~~L 221 (225)
T cd03513 152 LFWALPLILSSLQLFYFGTWLPHRP--GRGGFAD---R---H-RARSSRL-SPVLSFLTCYHFGYHHEHHLSPSTPWWRL 221 (225)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC--CCCCCCC---c---c-cceecCc-cHHHHHHHHHhcCcchhhccCCCCCcccC
Confidence 99999999999999877 8999973 3334321 1 1 2234322 26889865 78999999999999999999
Q ss_pred HHH
Q 015238 394 IEA 396 (411)
Q Consensus 394 p~a 396 (411)
|++
T Consensus 222 p~~ 224 (225)
T cd03513 222 PEL 224 (225)
T ss_pred ccc
Confidence 986
No 18
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=221.84 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=155.9
Q ss_pred CHHHHHHHccc-cccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcCCCh
Q 015238 110 KLADIRAAIPK-HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (411)
Q Consensus 110 ~l~~ir~~lpk-~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~~l~HDa~H~s~~~~~~ 188 (411)
+.+++|..+++ +.++.++.-.+...+.+++..++++.. -+...++++++.|..+++.+.++||.||.+.+|+++
T Consensus 100 ~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~-----i~~~~l~~a~Ll~~a~~Qs~~l~Hd~gH~~i~~~~~ 174 (430)
T KOG4232|consen 100 SFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLL-----IYLLSLISAVLLGLAWAQSGWLQHDYGHLSIFKNSK 174 (430)
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 36678888875 666666654444444333332222221 122246677788999999999999999999999999
Q ss_pred hHHHHHHHHHh-hccCChHHhHHHHhhhccCCCCCCCCCccccccH---HHHhhch--hhhhhH---Hhh-hhhhHHHHH
Q 015238 189 LNSVVGHLLHS-SILVPYHGWRISHRTHHQNHGHVENDESWHPLSE---KIYRTLD--SATRFL---RFK-IPFPLLAYP 258 (411)
Q Consensus 189 lN~~vG~l~~~-~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~---~~~~~l~--~~~r~l---r~~-~~~~ll~~p 258 (411)
+|+++..+.+- ..|.|..+|+..|+.||.++|..++|||....+. ....... ..++.. ..+ ..+...+.|
T Consensus 175 wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh~yf~~~~~p 254 (430)
T KOG4232|consen 175 WNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQHLYFFLIGPP 254 (430)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccceEEEEeccch
Confidence 99999998875 6799999999999999999999999999753221 1111100 001110 000 001111112
Q ss_pred HHHH--HhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH----HHHHHHHHHH
Q 015238 259 FYLW--SRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPY----WIFVMWLDLV 332 (411)
Q Consensus 259 ~yl~--~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~----lv~~~~l~~v 332 (411)
++.. .+... +-+.-....+.+.++.. ..+ .-++++...+ +.++.+.++|. +.++.|..++
T Consensus 255 ~l~~~~~~~~~---~~~~~~~~~w~Dl~~~~-----~~~-----~~~~i~~~~~-~~~~~~~~L~~w~~r~~~~~~s~~v 320 (430)
T KOG4232|consen 255 FLRLMWFQQSI---IFVQTNLLLWYDLYWPD-----RFY-----LRAFIYLHWG-WGLLLLSCLPNWPIRFLFSSWSFWV 320 (430)
T ss_pred HHHHHHHHHHH---HHHHhHHHHHHHhhhhh-----hHH-----HhhHHHhcch-hhhHHHHhccCchHHHHHHHHHHHH
Confidence 2111 00000 00000000000000000 000 0001111111 11122222222 2344555555
Q ss_pred H-hhccCCCCCCCCCCCCCcccccccce-eeecccc-ccccccccccCcccccccCCCCCccCHHHHHHHhhhhChhh
Q 015238 333 T-YLHHHGHEDKLPWYRGKEWSYLRGGL-TTLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSVDQPTV 407 (411)
Q Consensus 333 ~-~l~H~g~~~~~p~~~~~ew~~~r~~~-~Tid~~~-gwln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~~~p~~ 407 (411)
+ .++|+. +++....+..-+|.-.|+ +|+|+.. .|++|+.+++|||+||||||+||++||+++.+.+|+.|++.
T Consensus 321 ~l~~nH~~--~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL~~v~P~Vke~c~k~ 396 (430)
T KOG4232|consen 321 TLTMNHID--PEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNLNKVAPLVKELCKKH 396 (430)
T ss_pred HHhhhccc--hhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccchHHHHHHHHHHHHHc
Confidence 5 678884 323322221133334444 4666544 58899999999999999999999999999999999999874
No 19
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.87 E-value=2.8e-21 Score=179.14 Aligned_cols=265 Identities=20% Similarity=0.250 Sum_probs=154.2
Q ss_pred CCCCCCCCCCCCC-HHHHHHHcc--ccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-H-HHHHHHHHHHh
Q 015238 98 GSEFDPGAPPPFK-LADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLY-W-AAQGTMFWALF 172 (411)
Q Consensus 98 ~~~~~~~~~~~~~-l~~ir~~lp--k~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~-~-~~~G~~~~~l~ 172 (411)
+=+|...++|+-+ .+||.++.| |.+|++||+.-+.-++..++- +.++++.- -..| .|.+. + ++-|++-..++
T Consensus 9 dF~W~yTeePHasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q-~~~~~ll~-dl~W-~~il~~AYf~gg~iNhsl~ 85 (324)
T KOG2987|consen 9 DFEWVYTEEPHASRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQ-ILAAYLLR-DLDW-KWILFIAYFFGGFINHSLT 85 (324)
T ss_pred ceeEEecCCcchhHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHH-HHHHHHHh-cccH-HHHHHHHHHhhhhhchhHH
Confidence 3458889999985 779999999 599999997755333222221 22222211 1235 33333 2 34566678899
Q ss_pred hhhccccCCCCcCC--ChhHHHHHHHHHhhccCChH-HhHHHHhhhccCCCCCCCCCccccccHHH-HhhchhhhhhHHh
Q 015238 173 VLGHDCGHGSFSND--HKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSEKI-YRTLDSATRFLRF 248 (411)
Q Consensus 173 ~l~HDa~H~s~~~~--~~lN~~vG~l~~~~~g~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~-~~~l~~~~r~lr~ 248 (411)
.-.||.+|+.-|++ +-.|+++|.++.+|+|+|+. +.|..|.+||++.+..+-|.|..+..+.. +.+ ...+.+
T Consensus 86 LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea~~f~t--~~~K~i-- 161 (324)
T KOG2987|consen 86 LAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEAWLFDT--AFGKLI-- 161 (324)
T ss_pred HHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhheehhhh--hhHHHH--
Confidence 99999999999987 77999999999999999997 89999999999999988999986433211 111 111111
Q ss_pred hhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015238 249 KIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMW 328 (411)
Q Consensus 249 ~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~g~~~~l~l~~lP~lv~~~~ 328 (411)
...++.+. | -.|-. -..| ++-.+.+++ +.+.. ...-+.++.++|+..+. +++.+.+
T Consensus 162 w~~lQpfF---Y-~fRPl-----~i~p-----kp~t~me~i-N~iiQ---~~fd~li~~f~G~ksl~------Yll~~s~ 217 (324)
T KOG2987|consen 162 WVTLQPFF---Y-AFRPL-----FIYP-----KPPTDMEFI-NTIIQ---LSFDLLIVYFFGWKSLA------YLLASSF 217 (324)
T ss_pred HHHHHHHH---H-hhhhh-----eecC-----CCchHHHHH-HHHHH---HHHHHHHHHHHhHHHHH------HHHHHHH
Confidence 11122221 1 11210 0111 111233332 22222 22222334456765432 2222222
Q ss_pred HHHHHhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccCcccccccCCCCCccCHHHHHHHhhh
Q 015238 329 LDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEAVSIFSV 402 (411)
Q Consensus 329 l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~ninyHveHHLfP~IP~y~Lp~a~~~lk~ 402 (411)
++.- +.|..-+.-.|.....+++ +|... ||.+|+++.|.|||+|||-||.||.++||++.++..|
T Consensus 218 lg~g-------LHP~aGHFisEHY~f~k~~-ETySY-YGplN~~tfNvGYH~EHHDFP~Ipg~~Lp~Vr~iApE 282 (324)
T KOG2987|consen 218 LGMG-------LHPIAGHFISEHYMFKKGQ-ETYSY-YGPLNLLTFNVGYHVEHHDFPYIPGSRLPKVREIAPE 282 (324)
T ss_pred HcCC-------CCcccchhhHhhhhhcCCc-cceee-ecceeeEEEecccccccccCCCCCccccHHHHHhhHH
Confidence 2211 1010011111222222333 34432 5999999999999999999999999999998776544
No 20
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.80 E-value=8.2e-20 Score=180.58 Aligned_cols=220 Identities=21% Similarity=0.259 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHh-hhccCCCCCCCCCcccc
Q 015238 153 NWVVWPLYWAAQGTMFWAL-FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHR-THHQNHGHVENDESWHP 230 (411)
Q Consensus 153 ~w~~~~l~~~~~G~~~~~l-~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~-~HH~~tn~~~~Dpd~~p 230 (411)
+|+....+.+..|+....+ ...+||++| |++++|+++|.++..+.+ +..|+..|+ .||+++++ ++|||...
T Consensus 68 ~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~~--~~~~~~~H~~~HH~~v~t-p~DP~tar 140 (314)
T cd03512 68 SALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASLL--YGHFAIEHVRGHHRYVAT-PEDPATAR 140 (314)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHhc--ccceeeeecccCCCCCCC-CCCccccc
Confidence 4555555556667776644 478888888 679999999999876554 445999998 89999998 89999754
Q ss_pred ccHHHHhhchhhhhhH-HhhhhhhHHHHHHHHHHhCCCCCccccCCCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015238 231 LSEKIYRTLDSATRFL-RFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM 309 (411)
Q Consensus 231 ~~~~~~~~l~~~~r~l-r~~~~~~ll~~p~yl~~r~~g~~~~~~~p~~~lf~~~er~~~i~s~l~~~~~~a~l~~l~~~~ 309 (411)
..++.|+.+.. .+. .+.. +|-.- -.|.. +.+.. .+. -+.+++...++ .++++++++..
T Consensus 141 ~ge~~y~f~~r--~~~g~~~~-----aw~~e-~~rl~-~~g~~------~~~--~~n~~l~~~~~----~~a~~~~~~~~ 199 (314)
T cd03512 141 RGESFYRFLPR--ALVGSFRS-----AWKLE-KKRLR-RKGRS------PWS--PRNEVLRYLAL----AVALLALAAAL 199 (314)
T ss_pred cCccHHHHHHH--HHHHHHHH-----HHHHH-HHHHH-hcCCC------CCc--cchHHHHHHHH----HHHHHHHHHHH
Confidence 44434432110 000 0000 00000 00100 11100 011 12222222222 22333344444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccccceeeeccccccccccccccCcccccccCCCCC
Q 015238 310 GPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIP 389 (411)
Q Consensus 310 g~~~~l~l~~lP~lv~~~~l~~v~~l~H~g~~~~~p~~~~~ew~~~r~~~~Tid~~~gwln~l~~ninyHveHHLfP~IP 389 (411)
+.+..+.++++|.++....+..+.|+||.|+..+ ...+| .++..+.+ -+-+.+....|++..|++||.+||.+|++|
T Consensus 200 ~g~~~l~~~l~~~~~g~~~l~~~nY~EHyGL~r~-~~~~g-r~e~~~~~-hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~ 276 (314)
T cd03512 200 GGLAGLLFLLIQAFYAKSLLELVNYIEHYGLLRK-KLANG-RYEPVGPR-HSWNSNHIVSNLLLFNLQRHSDHHAHPTRP 276 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCCC-ccccCCCc-cCcCcCcHHHHHHHHhcchhhhhccCCCCc
Confidence 5556678889999888888889999999997542 11111 11111111 022222234588999999999999999999
Q ss_pred ccCHHHHHHHhhhhCh
Q 015238 390 HYHLIEAVSIFSVDQP 405 (411)
Q Consensus 390 ~y~Lp~a~~~lk~~~p 405 (411)
++.|+...+. +.+|
T Consensus 277 y~~L~~~~~~--p~lP 290 (314)
T cd03512 277 YQALRPFPEA--PQLP 290 (314)
T ss_pred hhhccCCccC--CCCC
Confidence 9999987764 4444
No 21
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.71 E-value=1.4e-17 Score=141.40 Aligned_cols=59 Identities=37% Similarity=0.535 Sum_probs=55.8
Q ss_pred HHhhhhccccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCcc
Q 015238 170 ALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESW 228 (411)
Q Consensus 170 ~l~~l~HDa~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd~ 228 (411)
++..++|||+|+++++++++|++++.+++.+++.|+..|+..|+.||+++++.++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 77799999999999999999999999999999999999999999999999997799874
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.51 E-value=8.2e-06 Score=77.78 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.4
Q ss_pred hccc-cCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCCc
Q 015238 175 GHDC-GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 227 (411)
Q Consensus 175 ~HDa-~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dpd 227 (411)
-|-| +|.++.-.+++..++.....+....|.-.|-..|+.||+++. ++.||-
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tD-Td~DPh 118 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKTD-TDQDPH 118 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcccC-CCCCCC
Confidence 4555 789998888988888777666777888899999999999994 478883
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.31 E-value=1.3e-05 Score=78.86 Aligned_cols=48 Identities=23% Similarity=0.212 Sum_probs=36.6
Q ss_pred ccCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCC
Q 015238 178 CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (411)
Q Consensus 178 a~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dp 226 (411)
-+|.++.-++++..++..+..+...-+.-.|...|+.||+++.+ ++||
T Consensus 80 ~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt-~~DP 127 (299)
T PLN02220 80 LAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDS-DRDP 127 (299)
T ss_pred HHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCc
Confidence 36888887888876666655555556677999999999999966 6777
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.74 E-value=0.00069 Score=66.15 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=36.3
Q ss_pred ccCCCCcCCChhHHHHHHHHHh-hccCChHHhHHHHhhhccCCCCCCCCCc
Q 015238 178 CGHGSFSNDHKLNSVVGHLLHS-SILVPYHGWRISHRTHHQNHGHVENDES 227 (411)
Q Consensus 178 a~H~s~~~~~~lN~~vG~l~~~-~~g~p~~~wr~~H~~HH~~tn~~~~Dpd 227 (411)
=+|.++.-++++.-++.....+ ..+-+ -.|-..|+.||++|.+ ++||-
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~-~~WvrdHR~HHk~tdT-D~DPh 139 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDI-IDWVRDHRVHHKFTDT-DADPH 139 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCCh-hHHHhhhhhhcccccc-CCCCC
Confidence 4788888888887777666554 34444 4788899999999977 88884
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.19 E-value=0.0042 Score=56.70 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=38.8
Q ss_pred cCCCCcCCChhHHHHHHHHHhhccCChHHhHHHHhhhccCCCCCCCCC
Q 015238 179 GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (411)
Q Consensus 179 ~H~s~~~~~~lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~~~Dp 226 (411)
+|+++.-++.+..++..+..+....+...|...|+.||+++.+ ++||
T Consensus 28 aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt-~~DP 74 (178)
T cd03505 28 AHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDT-DGDP 74 (178)
T ss_pred hhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCC-CCCC
Confidence 5899988888887777776666667888999999999999976 6776
No 26
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=66.39 E-value=17 Score=34.40 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=34.6
Q ss_pred CHHHHHHHccccccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 015238 110 KLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTM 167 (411)
Q Consensus 110 ~l~~ir~~lpk~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~ 167 (411)
++++|+++.- -.=+.|++-.++.++..++.+++..++.+.+++|+.|.+..+..|+.
T Consensus 9 ~~~Qi~q~y~-~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l 65 (224)
T PF13829_consen 9 RRKQIWQAYK-MTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLL 65 (224)
T ss_pred HHHHHHHHHH-HHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5677777763 22345677777666665555555555556677787776655554433
No 27
>PLN02601 beta-carotene hydroxylase
Probab=60.90 E-value=23 Score=34.43 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=41.4
Q ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-hhhccc-cCCCCcCCChhHHHHHHHHH
Q 015238 121 HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALF-VLGHDC-GHGSFSNDHKLNSVVGHLLH 198 (411)
Q Consensus 121 ~~f~~~~~r~~~~l~~~~~li~~~~~~a~~~~~w~~~~l~~~~~G~~~~~l~-~l~HDa-~H~s~~~~~~lN~~vG~l~~ 198 (411)
.-|++|+.-.+.+.+..++++ +.......++.+...++.+|+..+++. .+.||. .|..+--.+..|
T Consensus 176 g~FE~NDlFaVifAvpAIaL~----~~G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~-------- 243 (303)
T PLN02601 176 GAFELNDVFAIVNAVPAIGLL----YYGFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIAN-------- 243 (303)
T ss_pred CCcccccchhhhhHHHHHHHH----HHhhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCC--------
Confidence 447777765554433222221 111111222222334456677777766 889995 677653222211
Q ss_pred hhccCCh-HHhHHHHhhhcc
Q 015238 199 SSILVPY-HGWRISHRTHHQ 217 (411)
Q Consensus 199 ~~~g~p~-~~wr~~H~~HH~ 217 (411)
.+| ..-+.-|..||+
T Consensus 244 ----~~Y~rrl~~AHklHHa 259 (303)
T PLN02601 244 ----VPYLRKVAAAHQLHHT 259 (303)
T ss_pred ----CHHHHHHHHHHHhhcc
Confidence 122 244568999999
No 28
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=51.23 E-value=1.8e+02 Score=27.54 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=23.4
Q ss_pred hhhccccCCCCcC--CCh---hHHHHHHHHHhhccCChHHhHHHHhhhccCCCCC
Q 015238 173 VLGHDCGHGSFSN--DHK---LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHV 222 (411)
Q Consensus 173 ~l~HDa~H~s~~~--~~~---lN~~vG~l~~~~~g~p~~~wr~~H~~HH~~tn~~ 222 (411)
.+-|-.....+.+ +.+ .+.++..+.+.-+| .|++||.++..+
T Consensus 171 ~lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fg--------yH~eHH~fP~~P 217 (225)
T cd03513 171 WLPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFG--------YHHEHHLSPSTP 217 (225)
T ss_pred hcCCCCCCCCCCCcccceecCccHHHHHHHHHhcC--------cchhhccCCCCC
Confidence 4567665555442 122 24555554322222 599999999763
No 29
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=49.30 E-value=7.3 Score=27.58 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=5.3
Q ss_pred cccCCCCCC
Q 015238 7 SECGLKPLP 15 (411)
Q Consensus 7 ~~~~~~~~~ 15 (411)
++||+|||=
T Consensus 20 adCG~RPlF 28 (49)
T PF09396_consen 20 ADCGLRPLF 28 (49)
T ss_dssp TTTT--TTT
T ss_pred cccCcchhh
Confidence 469999984
No 30
>PLN02434 fatty acid hydroxylase
Probab=31.83 E-value=2.4e+02 Score=27.08 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=8.5
Q ss_pred HHhhhccCCCC
Q 015238 211 SHRTHHQNHGH 221 (411)
Q Consensus 211 ~H~~HH~~tn~ 221 (411)
.|..||..+++
T Consensus 122 lHg~HH~~P~D 132 (237)
T PLN02434 122 LHGCHHKHPMD 132 (237)
T ss_pred HHHHhhcCCCC
Confidence 58899987754
No 31
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=27.38 E-value=5e+02 Score=25.38 Aligned_cols=13 Identities=23% Similarity=0.082 Sum_probs=10.5
Q ss_pred HHHhhhccCCCCC
Q 015238 210 ISHRTHHQNHGHV 222 (411)
Q Consensus 210 ~~H~~HH~~tn~~ 222 (411)
..|..||.++..+
T Consensus 230 nyH~~HH~~P~vP 242 (288)
T cd03509 230 NLHVVHHDLPTLP 242 (288)
T ss_pred CchHhhcCCCCCC
Confidence 3599999999874
No 32
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=23.41 E-value=1.5e+02 Score=26.82 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=9.3
Q ss_pred HHhhhccCCCC
Q 015238 211 SHRTHHQNHGH 221 (411)
Q Consensus 211 ~H~~HH~~tn~ 221 (411)
.|..||.+++.
T Consensus 220 ~H~~HHl~P~v 230 (257)
T PF00487_consen 220 YHIEHHLFPGV 230 (257)
T ss_pred ChHHhCCCCCc
Confidence 58999999865
Done!