Query 015238
Match_columns 411
No_of_seqs 244 out of 1767
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:06:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bei_A Prothrombin; serine pro 41.1 8.5 0.00029 25.7 0.8 9 7-15 15-23 (44)
2 1etr_L Epsilon-thrombin; serin 35.3 12 0.0004 25.6 0.8 8 8-15 21-28 (49)
3 3b9f_L Prothrombin; michaelis 35.3 12 0.0004 25.6 0.8 8 8-15 21-28 (49)
4 3rm2_L Thrombin light chain; s 26.0 21 0.00073 22.9 0.8 8 8-15 8-15 (36)
5 2dae_A KIAA0733 protein; mitog 18.0 37 0.0013 25.2 0.8 34 375-408 8-55 (75)
6 3plv_C 66 kDa U4/U6.U5 small n 13.4 66 0.0023 18.1 0.9 9 8-16 13-21 (21)
7 3cqb_A Probable protease HTPX 6.6 80 0.0027 24.8 -0.7 10 173-182 86-95 (107)
8 2q14_A Phosphohydrolase; BT420 6.2 1.7E+02 0.0059 28.8 1.3 16 170-185 90-105 (410)
9 3bg2_A DGTP triphosphohydrolas 5.3 2.1E+02 0.0073 28.5 1.3 17 170-186 110-126 (444)
10 3irh_A HD domain protein; phos 5.2 2.2E+02 0.0074 28.8 1.3 17 168-184 126-142 (480)
No 1
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=41.06 E-value=8.5 Score=25.66 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=7.1
Q ss_pred cccCCCCCC
Q 015238 7 SECGLKPLP 15 (411)
Q Consensus 7 ~~~~~~~~~ 15 (411)
.+||+|||=
T Consensus 15 ~dCG~RPlF 23 (44)
T 3bei_A 15 ADCGLRPLF 23 (44)
T ss_dssp TTTTCCTTT
T ss_pred cccccchhH
Confidence 369999985
No 2
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=35.26 E-value=12 Score=25.62 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.7
Q ss_pred ccCCCCCC
Q 015238 8 ECGLKPLP 15 (411)
Q Consensus 8 ~~~~~~~~ 15 (411)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 1etr_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999985
No 3
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=35.25 E-value=12 Score=25.62 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.7
Q ss_pred ccCCCCCC
Q 015238 8 ECGLKPLP 15 (411)
Q Consensus 8 ~~~~~~~~ 15 (411)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 3b9f_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 59999985
No 4
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=26.03 E-value=21 Score=22.89 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 015238 8 ECGLKPLP 15 (411)
Q Consensus 8 ~~~~~~~~ 15 (411)
.||+||+=
T Consensus 8 ~CG~rPlf 15 (36)
T 3rm2_L 8 DCGLRPLF 15 (36)
T ss_dssp TTTCCTTT
T ss_pred ccccCchh
Confidence 59999985
No 5
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.00 E-value=37 Score=25.17 Aligned_cols=34 Identities=29% Similarity=0.607 Sum_probs=26.5
Q ss_pred ccCccccccc---CCCCC-----------ccCHHHHHHHhhhhChhhh
Q 015238 375 DIGTHVIHHL---FPQIP-----------HYHLIEAVSIFSVDQPTVL 408 (411)
Q Consensus 375 ninyHveHHL---fP~IP-----------~y~Lp~a~~~lk~~~p~~l 408 (411)
.+++|+-|.| ||.|| -+|+.++-..+++.-+++|
T Consensus 8 q~d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kYL 55 (75)
T 2dae_A 8 QIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYL 55 (75)
T ss_dssp CCCHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcccce
Confidence 3557888876 89998 4788888888888877776
No 6
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=13.44 E-value=66 Score=18.06 Aligned_cols=9 Identities=44% Similarity=0.722 Sum_probs=7.0
Q ss_pred ccCCCCCCC.....
Q 015238 8 ECGLKPLPH..... 16 (411)
Q Consensus 8 ~~~~~~~~~..... 16 (411)
+-||+|+|+
T Consensus 13 ~lGLkplp~..... 21 (21)
T 3plv_C 13 SLGLKLIPPxxxxx 26 (26)
T ss_dssp HTTCCCCCC.....
T ss_pred HcCCCCCCC.....
Confidence 359999983
No 7
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=6.64 E-value=80 Score=24.75 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=8.3
Q ss_pred hhhccccCCC
Q 015238 173 VLGHDCGHGS 182 (411)
Q Consensus 173 ~l~HDa~H~s 182 (411)
+++||.||..
T Consensus 86 VlaHElgH~~ 95 (107)
T 3cqb_A 86 VLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7889999865
No 8
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=6.24 E-value=1.7e+02 Score=28.84 Aligned_cols=16 Identities=50% Similarity=0.804 Sum_probs=12.4
Q ss_pred HHhhhhccccCCCCcC
Q 015238 170 ALFVLGHDCGHGSFSN 185 (411)
Q Consensus 170 ~l~~l~HDa~H~s~~~ 185 (411)
.+..|.||.||+.|+.
T Consensus 90 ~~AaLlHDiGh~PfsH 105 (410)
T 2q14_A 90 QAAILLHDIGHGPFSH 105 (410)
T ss_dssp HHHHHHTTTTCCTTHH
T ss_pred HHHHHHhccCCCcccc
Confidence 3446889999998864
No 9
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=5.27 E-value=2.1e+02 Score=28.52 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=13.5
Q ss_pred HHhhhhccccCCCCcCC
Q 015238 170 ALFVLGHDCGHGSFSND 186 (411)
Q Consensus 170 ~l~~l~HDa~H~s~~~~ 186 (411)
.+..|+||.||..|+..
T Consensus 110 ~~a~L~HDiGH~PFgH~ 126 (444)
T 3bg2_A 110 AAAALAHDIGNPPFGHS 126 (444)
T ss_dssp HHHHHHTTTTCCTTHHH
T ss_pred HHHHHhcccCCCCcccc
Confidence 34478999999999754
No 10
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=5.23 E-value=2.2e+02 Score=28.84 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=0.0
Q ss_pred HHHHhhhhccccCCCCc
Q 015238 168 FWALFVLGHDCGHGSFS 184 (411)
Q Consensus 168 ~~~l~~l~HDa~H~s~~ 184 (411)
...+..|.||.||+.|+
T Consensus 126 ~v~~AaLlHDIGH~PFs 142 (480)
T 3irh_A 126 ITLCAALLHDVGHGPYS 142 (480)
T ss_dssp HHHHHHHHTTTTCCTTH
T ss_pred HHHHHHHHhccCCCCcc
Done!