Query 015240
Match_columns 411
No_of_seqs 60 out of 62
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 04:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.9E-21 147.0 11.4 80 194-282 269-348 (352)
2 KOG0122 Translation initiation 99.6 5.9E-16 1.3E-20 148.0 7.7 84 189-281 184-267 (270)
3 TIGR01659 sex-lethal sex-letha 99.6 7.6E-16 1.6E-20 149.6 8.4 136 128-286 142-278 (346)
4 TIGR01622 SF-CC1 splicing fact 99.6 6.5E-15 1.4E-19 141.4 12.3 137 132-282 128-265 (457)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.1E-15 4.5E-20 139.2 8.2 132 130-284 40-172 (352)
6 TIGR01645 half-pint poly-U bin 99.6 3.7E-15 8E-20 155.3 10.0 134 132-275 146-282 (612)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.3E-14 9.4E-19 137.2 12.9 141 132-282 220-374 (509)
8 PLN03134 glycine-rich RNA-bind 99.5 9.6E-14 2.1E-18 119.8 10.8 90 187-285 27-116 (144)
9 TIGR01628 PABP-1234 polyadenyl 99.5 5.4E-14 1.2E-18 139.9 8.2 141 132-282 216-363 (562)
10 KOG0127 Nucleolar protein fibr 99.5 3.1E-13 6.6E-18 140.2 11.7 131 133-269 45-186 (678)
11 TIGR01628 PABP-1234 polyadenyl 99.4 3.8E-13 8.3E-18 133.9 8.7 117 132-268 39-156 (562)
12 PF00076 RRM_1: RNA recognitio 99.4 1.4E-12 3.1E-17 93.2 7.9 67 197-269 1-67 (70)
13 TIGR01659 sex-lethal sex-letha 99.3 7.6E-12 1.7E-16 121.9 9.6 84 189-281 102-185 (346)
14 COG0724 RNA-binding proteins ( 99.3 8.6E-12 1.9E-16 102.5 8.4 70 194-268 115-184 (306)
15 KOG0148 Apoptosis-promoting RN 99.3 7.3E-12 1.6E-16 122.0 8.7 150 117-281 80-236 (321)
16 PF14259 RRM_6: RNA recognitio 99.3 1.6E-11 3.5E-16 90.0 8.2 70 197-272 1-70 (70)
17 TIGR01648 hnRNP-R-Q heterogene 99.3 1.6E-11 3.6E-16 127.5 10.9 126 132-285 179-309 (578)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.2E-11 2.7E-16 122.9 9.1 147 119-281 22-172 (481)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.2 3.1E-11 6.8E-16 117.4 10.0 142 133-280 335-499 (509)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 5.9E-11 1.3E-15 118.1 11.4 139 134-279 312-476 (481)
21 PLN03213 repressor of silencin 99.2 2E-11 4.4E-16 126.4 8.1 74 192-274 8-85 (759)
22 smart00362 RRM_2 RNA recogniti 99.1 2.6E-10 5.7E-15 78.8 8.3 68 196-270 1-68 (72)
23 TIGR01645 half-pint poly-U bin 99.1 2.1E-10 4.5E-15 120.3 8.6 72 192-268 105-176 (612)
24 smart00360 RRM RNA recognition 99.1 4.5E-10 9.7E-15 77.1 7.3 65 199-268 1-65 (71)
25 KOG0123 Polyadenylate-binding 99.1 3E-10 6.6E-15 112.1 7.3 109 134-271 36-145 (369)
26 TIGR01622 SF-CC1 splicing fact 99.1 5.3E-10 1.1E-14 107.8 8.7 70 193-268 88-157 (457)
27 PLN03120 nucleic acid binding 99.0 1.6E-09 3.5E-14 104.1 9.4 76 194-282 4-79 (260)
28 TIGR01648 hnRNP-R-Q heterogene 99.0 2.5E-09 5.4E-14 111.5 10.8 73 192-270 56-128 (578)
29 cd00590 RRM RRM (RNA recogniti 99.0 4.2E-09 9.1E-14 73.1 8.3 70 196-271 1-70 (74)
30 KOG0125 Ataxin 2-binding prote 98.9 2.9E-09 6.2E-14 106.0 6.2 74 193-273 95-168 (376)
31 PLN03121 nucleic acid binding 98.9 7.7E-09 1.7E-13 98.8 8.6 77 192-281 3-79 (243)
32 KOG0147 Transcriptional coacti 98.8 4.5E-09 9.8E-14 109.0 4.8 140 132-284 218-359 (549)
33 KOG0107 Alternative splicing f 98.8 8.9E-09 1.9E-13 95.7 6.2 67 192-268 8-74 (195)
34 KOG0108 mRNA cleavage and poly 98.8 1.1E-08 2.4E-13 103.9 7.2 70 195-269 19-88 (435)
35 smart00361 RRM_1 RNA recogniti 98.8 2.3E-08 5E-13 75.8 6.9 58 209-268 2-64 (70)
36 KOG0110 RNA-binding protein (R 98.8 9E-09 2E-13 109.3 6.3 121 136-268 561-682 (725)
37 KOG0117 Heterogeneous nuclear 98.7 2.6E-08 5.5E-13 102.3 7.9 83 192-282 81-163 (506)
38 KOG0145 RNA-binding protein EL 98.7 3E-08 6.4E-13 97.4 8.0 79 193-276 277-355 (360)
39 KOG0131 Splicing factor 3b, su 98.6 2E-07 4.3E-12 87.3 8.1 130 130-282 46-176 (203)
40 KOG0148 Apoptosis-promoting RN 98.5 1.5E-07 3.2E-12 92.4 6.3 104 194-319 62-165 (321)
41 KOG0149 Predicted RNA-binding 98.5 1.9E-07 4.1E-12 89.7 6.1 78 195-282 13-90 (247)
42 KOG0127 Nucleolar protein fibr 98.5 6.7E-07 1.5E-11 94.0 10.0 69 188-261 286-354 (678)
43 KOG0126 Predicted RNA-binding 98.5 2.4E-08 5.2E-13 93.8 -0.7 72 192-268 33-104 (219)
44 KOG0131 Splicing factor 3b, su 98.5 3.6E-07 7.8E-12 85.6 7.0 82 190-281 5-87 (203)
45 PF13893 RRM_5: RNA recognitio 98.4 8.2E-07 1.8E-11 63.9 7.1 55 212-279 1-55 (56)
46 KOG0114 Predicted RNA-binding 98.4 5.9E-07 1.3E-11 78.7 7.2 65 196-268 20-84 (124)
47 KOG0123 Polyadenylate-binding 98.4 3.8E-07 8.2E-12 90.5 6.1 127 133-269 206-339 (369)
48 KOG0145 RNA-binding protein EL 98.4 6.3E-07 1.4E-11 88.3 6.3 129 132-283 80-209 (360)
49 KOG0109 RNA-binding protein LA 98.3 8.3E-07 1.8E-11 87.9 5.6 83 195-294 3-85 (346)
50 KOG0117 Heterogeneous nuclear 98.3 1.5E-06 3.3E-11 89.5 7.5 124 131-283 204-331 (506)
51 KOG4206 Spliceosomal protein s 98.3 2.4E-06 5.1E-11 81.2 7.8 89 189-289 5-96 (221)
52 KOG0146 RNA-binding protein ET 98.3 1E-06 2.2E-11 87.0 5.6 75 189-268 280-354 (371)
53 KOG0105 Alternative splicing f 98.3 1E-06 2.3E-11 83.4 4.9 72 194-274 6-80 (241)
54 KOG0144 RNA-binding protein CU 98.2 1.4E-06 3E-11 89.7 5.9 122 131-269 72-193 (510)
55 KOG4207 Predicted splicing fac 98.2 2.3E-06 5.1E-11 82.0 5.7 73 191-268 10-82 (256)
56 KOG0130 RNA-binding protein RB 98.2 3.1E-06 6.8E-11 77.1 5.8 91 187-284 65-155 (170)
57 KOG4208 Nucleolar RNA-binding 98.1 5.2E-06 1.1E-10 78.6 7.0 108 193-308 48-155 (214)
58 KOG0144 RNA-binding protein CU 98.1 3E-06 6.5E-11 87.3 5.6 78 186-268 416-493 (510)
59 KOG0121 Nuclear cap-binding pr 98.1 8.9E-06 1.9E-10 73.5 6.4 78 193-279 35-112 (153)
60 KOG0110 RNA-binding protein (R 98.0 1.4E-05 3.1E-10 85.6 8.3 159 113-274 399-593 (725)
61 KOG0124 Polypyrimidine tract-b 98.0 5.9E-06 1.3E-10 84.4 4.9 71 193-268 112-182 (544)
62 KOG4210 Nuclear localization s 97.9 1.8E-05 3.9E-10 76.5 6.2 122 133-267 128-252 (285)
63 KOG4205 RNA-binding protein mu 97.9 1.4E-05 3E-10 78.7 4.9 126 126-267 39-164 (311)
64 KOG0533 RRM motif-containing p 97.9 4.1E-05 8.9E-10 73.4 7.7 83 195-287 84-166 (243)
65 KOG0111 Cyclophilin-type pepti 97.8 1.3E-05 2.9E-10 77.7 3.9 68 195-267 11-78 (298)
66 KOG0132 RNA polymerase II C-te 97.6 0.00011 2.4E-09 80.0 6.7 74 194-282 421-494 (894)
67 KOG0109 RNA-binding protein LA 97.5 9.6E-05 2.1E-09 73.7 3.8 106 136-272 37-145 (346)
68 KOG0113 U1 small nuclear ribon 97.4 0.00034 7.3E-09 69.9 7.2 72 192-268 99-170 (335)
69 KOG0116 RasGAP SH3 binding pro 97.4 0.00036 7.7E-09 71.4 6.5 68 189-261 283-350 (419)
70 KOG1457 RNA binding protein (c 97.3 0.0012 2.6E-08 64.4 9.6 91 192-287 32-122 (284)
71 KOG0106 Alternative splicing f 97.3 0.00018 3.9E-09 68.2 3.6 71 195-282 2-72 (216)
72 KOG4454 RNA binding protein (R 97.2 0.00015 3.3E-09 70.2 2.3 79 193-278 8-86 (267)
73 PF04059 RRM_2: RNA recognitio 97.0 0.0041 8.8E-08 52.5 8.0 70 195-269 2-73 (97)
74 COG0724 RNA-binding proteins ( 96.8 0.0026 5.6E-08 52.7 5.7 131 131-266 153-292 (306)
75 KOG0124 Polypyrimidine tract-b 96.8 0.0021 4.6E-08 66.3 6.0 135 133-281 153-294 (544)
76 KOG0226 RNA-binding proteins [ 96.7 0.0021 4.5E-08 63.4 4.9 72 192-268 188-259 (290)
77 KOG4212 RNA-binding protein hn 96.7 0.0035 7.5E-08 65.8 6.6 66 197-268 47-113 (608)
78 KOG4661 Hsp27-ERE-TATA-binding 96.6 0.0035 7.7E-08 67.5 6.4 72 191-267 402-473 (940)
79 KOG0415 Predicted peptidyl pro 96.6 0.0082 1.8E-07 61.8 8.2 78 189-271 234-311 (479)
80 KOG1548 Transcription elongati 96.1 0.031 6.7E-07 57.2 9.2 188 114-313 54-256 (382)
81 KOG4209 Splicing factor RNPS1, 95.8 0.023 4.9E-07 54.0 6.6 89 190-284 97-185 (231)
82 KOG0151 Predicted splicing reg 95.8 0.014 3E-07 63.9 5.7 73 192-268 172-246 (877)
83 KOG1995 Conserved Zn-finger pr 95.6 0.016 3.4E-07 58.9 4.8 75 191-268 63-143 (351)
84 PF11608 Limkain-b1: Limkain b 95.6 0.045 9.8E-07 46.6 6.7 65 196-274 4-72 (90)
85 KOG0153 Predicted RNA-binding 95.5 0.028 6.1E-07 57.4 6.0 62 194-266 228-289 (377)
86 KOG0146 RNA-binding protein ET 94.9 0.052 1.1E-06 54.6 5.9 70 193-268 18-87 (371)
87 KOG4212 RNA-binding protein hn 94.6 0.059 1.3E-06 56.9 5.8 68 191-268 533-600 (608)
88 KOG4205 RNA-binding protein mu 94.5 0.036 7.8E-07 55.1 3.8 65 193-262 5-69 (311)
89 KOG3152 TBP-binding protein, a 94.5 0.023 5E-07 56.1 2.3 71 196-269 76-156 (278)
90 PF08777 RRM_3: RNA binding mo 94.4 0.1 2.2E-06 43.9 5.8 60 194-264 1-60 (105)
91 KOG1457 RNA binding protein (c 94.4 0.044 9.6E-07 53.9 4.0 67 193-268 209-275 (284)
92 KOG2314 Translation initiation 94.3 0.044 9.6E-07 59.0 4.2 66 197-267 61-131 (698)
93 KOG4206 Spliceosomal protein s 94.2 0.13 2.8E-06 49.6 6.7 69 189-267 141-209 (221)
94 KOG0120 Splicing factor U2AF, 93.8 0.079 1.7E-06 55.9 4.7 81 189-274 284-364 (500)
95 KOG0106 Alternative splicing f 93.6 0.048 1E-06 52.1 2.6 65 191-268 96-160 (216)
96 PF03467 Smg4_UPF3: Smg-4/UPF3 93.3 0.17 3.6E-06 46.1 5.4 89 192-282 5-97 (176)
97 KOG4660 Protein Mei2, essentia 93.2 0.078 1.7E-06 56.6 3.6 66 193-268 74-139 (549)
98 KOG0128 RNA-binding protein SA 92.0 0.18 3.9E-06 56.2 4.5 99 131-267 705-803 (881)
99 KOG4849 mRNA cleavage factor I 89.7 0.3 6.6E-06 50.7 3.5 70 194-268 80-151 (498)
100 PF03880 DbpA: DbpA RNA bindin 89.5 0.7 1.5E-05 36.2 4.6 67 201-279 6-73 (74)
101 PLN03134 glycine-rich RNA-bind 89.2 0.15 3.2E-06 44.7 0.7 45 132-176 73-118 (144)
102 smart00361 RRM_1 RNA recogniti 89.0 0.12 2.7E-06 39.2 0.1 32 132-163 34-66 (70)
103 PF14605 Nup35_RRM_2: Nup53/35 87.9 1.5 3.2E-05 33.0 5.2 51 196-258 3-53 (53)
104 KOG4211 Splicing factor hnRNP- 87.7 4 8.6E-05 43.7 10.0 114 133-260 47-164 (510)
105 KOG2193 IGF-II mRNA-binding pr 85.8 0.89 1.9E-05 48.3 4.1 64 196-270 3-66 (584)
106 PF14812 PBP1_TM: Transmembran 84.3 0.31 6.7E-06 40.8 0.0 22 116-138 48-69 (81)
107 COG5175 MOT2 Transcriptional r 83.5 2.3 5E-05 44.3 5.8 74 195-274 115-197 (480)
108 KOG4211 Splicing factor hnRNP- 83.5 3 6.4E-05 44.7 6.7 64 189-260 5-68 (510)
109 PF09026 CENP-B_dimeris: Centr 82.4 0.63 1.4E-05 40.6 1.1 33 110-146 30-62 (101)
110 KOG0111 Cyclophilin-type pepti 82.2 0.57 1.2E-05 46.4 0.9 62 118-179 29-97 (298)
111 KOG0147 Transcriptional coacti 79.1 3.4 7.4E-05 44.6 5.4 55 208-272 466-520 (549)
112 PF07576 BRAP2: BRCA1-associat 79.0 15 0.00033 31.8 8.4 82 193-282 11-92 (110)
113 PTZ00415 transmission-blocking 78.5 1 2.2E-05 54.2 1.5 36 91-126 151-186 (2849)
114 PF09026 CENP-B_dimeris: Centr 78.3 0.92 2E-05 39.6 0.8 34 98-131 21-54 (101)
115 PF08675 RNA_bind: RNA binding 76.3 11 0.00024 32.3 6.6 63 187-262 1-63 (87)
116 KOG1548 Transcription elongati 75.9 6.3 0.00014 41.0 6.0 79 192-282 263-351 (382)
117 KOG0149 Predicted RNA-binding 73.9 1.4 3E-05 43.5 0.8 39 133-171 52-90 (247)
118 KOG0129 Predicted RNA-binding 73.3 10 0.00022 40.9 7.0 77 189-273 365-444 (520)
119 KOG1190 Polypyrimidine tract-b 72.8 21 0.00045 38.2 8.9 102 194-308 297-400 (492)
120 KOG4207 Predicted splicing fac 71.5 2 4.4E-05 42.2 1.3 46 131-176 51-97 (256)
121 PF08952 DUF1866: Domain of un 70.0 13 0.00029 34.1 6.1 69 190-271 25-99 (146)
122 KOG1295 Nonsense-mediated deca 69.8 5.6 0.00012 41.3 4.1 69 195-268 8-79 (376)
123 KOG0128 RNA-binding protein SA 69.6 0.63 1.4E-05 52.1 -2.8 68 193-265 666-733 (881)
124 KOG1365 RNA-binding protein Fu 66.4 17 0.00037 38.7 6.7 59 193-260 160-225 (508)
125 KOG2202 U2 snRNP splicing fact 65.8 3.5 7.7E-05 40.9 1.7 57 217-282 91-147 (260)
126 PF00076 RRM_1: RNA recognitio 65.7 2.6 5.7E-05 29.9 0.6 28 132-159 36-63 (70)
127 PF06524 NOA36: NOA36 protein; 64.4 4.5 9.8E-05 40.9 2.2 14 50-63 226-239 (314)
128 KOG1190 Polypyrimidine tract-b 63.7 19 0.00041 38.5 6.5 67 192-267 412-478 (492)
129 KOG1855 Predicted RNA-binding 62.7 8.3 0.00018 41.1 3.8 69 193-262 230-307 (484)
130 PF10446 DUF2457: Protein of u 62.3 4.1 8.9E-05 43.2 1.5 19 200-218 187-212 (458)
131 KOG4660 Protein Mei2, essentia 61.7 7.7 0.00017 42.1 3.4 70 193-265 360-455 (549)
132 KOG0120 Splicing factor U2AF, 61.5 20 0.00044 38.5 6.4 138 127-268 319-481 (500)
133 PLN03213 repressor of silencin 57.5 4.1 9E-05 44.3 0.6 41 131-171 44-87 (759)
134 PF10446 DUF2457: Protein of u 57.1 5.8 0.00013 42.1 1.5 11 133-143 105-115 (458)
135 KOG2416 Acinus (induces apopto 55.5 15 0.00033 40.7 4.3 68 189-267 439-507 (718)
136 PF04931 DNA_pol_phi: DNA poly 55.1 7 0.00015 42.7 1.8 25 42-71 594-618 (784)
137 KOG4307 RNA binding protein RB 53.0 22 0.00047 40.3 5.1 138 117-260 333-495 (944)
138 smart00360 RRM RNA recognition 48.3 10 0.00023 25.6 1.2 25 133-157 36-60 (71)
139 KOG2068 MOT2 transcription fac 48.2 19 0.00041 37.0 3.4 71 196-271 79-154 (327)
140 PF05172 Nup35_RRM: Nup53/35/4 48.2 33 0.00071 29.4 4.4 64 201-268 13-80 (100)
141 KOG4307 RNA binding protein RB 47.2 41 0.00089 38.3 6.0 66 196-269 869-937 (944)
142 PF08595 RXT2_N: RXT2-like, N- 46.0 11 0.00025 34.3 1.5 43 90-132 52-96 (149)
143 PF13893 RRM_5: RNA recognitio 45.5 2.1 4.5E-05 30.7 -2.7 33 135-167 21-54 (56)
144 PF03066 Nucleoplasmin: Nucleo 45.5 7 0.00015 35.3 0.0 7 33-39 63-69 (149)
145 KOG1456 Heterogeneous nuclear 45.4 76 0.0016 34.0 7.3 98 166-272 84-194 (494)
146 KOG2830 Protein phosphatase 2A 43.5 17 0.00037 37.3 2.4 53 2-65 198-250 (324)
147 KOG0129 Predicted RNA-binding 42.3 63 0.0014 35.2 6.4 165 192-393 257-436 (520)
148 PF04847 Calcipressin: Calcipr 42.3 48 0.001 31.0 4.9 58 209-280 9-68 (184)
149 KOG1832 HIV-1 Vpr-binding prot 41.2 12 0.00026 43.5 1.0 14 35-48 1346-1359(1516)
150 KOG0125 Ataxin 2-binding prote 40.7 12 0.00025 39.0 0.7 42 131-172 132-174 (376)
151 PF05573 NosL: NosL; InterPro 37.9 29 0.00063 30.7 2.7 31 241-271 114-144 (149)
152 PHA03346 US22 family homolog; 37.2 27 0.00059 37.6 2.8 38 96-133 428-465 (520)
153 KOG4210 Nuclear localization s 36.0 32 0.0007 33.9 2.9 79 192-276 86-165 (285)
154 KOG3130 Uncharacterized conser 34.8 20 0.00044 38.3 1.4 14 86-99 265-278 (514)
155 KOG4410 5-formyltetrahydrofola 34.4 34 0.00073 35.5 2.8 47 195-252 331-378 (396)
156 KOG3871 Cell adhesion complex 34.0 40 0.00087 35.7 3.3 18 209-226 180-197 (449)
157 PF14283 DUF4366: Domain of un 33.8 31 0.00068 33.1 2.4 6 67-72 169-174 (218)
158 PF04931 DNA_pol_phi: DNA poly 33.7 23 0.00049 38.9 1.6 7 211-217 740-746 (784)
159 KOG2591 c-Mpl binding protein, 32.6 98 0.0021 34.5 6.0 70 187-268 166-246 (684)
160 PF04889 Cwf_Cwc_15: Cwf15/Cwc 29.1 20 0.00044 34.8 0.3 13 19-31 25-37 (244)
161 KOG0943 Predicted ubiquitin-pr 29.1 33 0.00072 41.5 2.0 19 288-306 1962-1980(3015)
162 PF02714 DUF221: Domain of unk 27.4 58 0.0013 30.9 3.0 20 244-263 1-20 (325)
163 PTZ00415 transmission-blocking 25.8 35 0.00076 42.3 1.5 18 36-53 89-106 (2849)
164 TIGR01873 cas_CT1978 CRISPR-as 24.9 1E+02 0.0023 26.2 3.7 44 196-250 27-74 (87)
165 KOG0122 Translation initiation 24.4 41 0.00089 33.9 1.5 41 117-157 207-253 (270)
166 KOG2140 Uncharacterized conser 24.0 38 0.00082 37.6 1.2 40 79-118 400-439 (739)
167 PRK01178 rps24e 30S ribosomal 23.6 1.8E+02 0.0038 25.2 4.9 50 207-260 35-84 (99)
168 PLN03120 nucleic acid binding 23.5 38 0.00083 33.7 1.1 37 134-171 42-79 (260)
169 KOG2253 U1 snRNP complex, subu 22.9 73 0.0016 35.7 3.1 93 187-294 33-127 (668)
170 PF08206 OB_RNB: Ribonuclease 22.7 51 0.0011 24.9 1.4 10 241-250 8-17 (58)
171 PF05086 Dicty_REP: Dictyostel 22.3 43 0.00092 38.3 1.2 11 25-35 824-834 (911)
172 KOG0112 Large RNA-binding prot 21.0 28 0.00062 40.0 -0.4 71 193-269 371-441 (975)
173 KOG3540 Beta amyloid precursor 20.6 68 0.0015 35.2 2.2 21 39-59 111-131 (615)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.3e-16 Score=147.05 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=69.8
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
|-.|||+|||.+++ +.+|+.+|..+|.|.+++ +..++.|| .|||||||+|.+.++|.++|+.+||+.|.+ +
T Consensus 269 ~~~lfV~NL~~~~~-e~~L~~~F~~fG~v~~v~--i~~d~~t~--~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g----r 339 (352)
T TIGR01661 269 GYCIFVYNLSPDTD-ETVLWQLFGPFGAVQNVK--IIRDLTTN--QCKGYGFVSMTNYDEAAMAILSLNGYTLGN----R 339 (352)
T ss_pred CcEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EeEcCCCC--CccceEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 34799999999975 889999999999999998 77788897 999999999999999999999999999874 5
Q ss_pred eeeeeeecC
Q 015240 274 QIRCEMVNS 282 (411)
Q Consensus 274 ~ikce~~~~ 282 (411)
.|++..+..
T Consensus 340 ~i~V~~~~~ 348 (352)
T TIGR01661 340 VLQVSFKTN 348 (352)
T ss_pred EEEEEEccC
Confidence 666665543
No 2
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.9e-16 Score=147.97 Aligned_cols=84 Identities=29% Similarity=0.374 Sum_probs=72.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+.+..+|||+|||++++ +.||++||..||.|.||+ +..|++|| +|||||||+|.++++|.++|+.|||+-..-
T Consensus 184 R~R~D~~tvRvtNLsed~~-E~dL~eLf~~fg~i~rvy--lardK~TG--~~kGFAFVtF~sRddA~rAI~~LnG~gyd~ 258 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMR-EDDLEELFRPFGPITRVY--LARDKETG--LSKGFAFVTFESRDDAARAIADLNGYGYDN 258 (270)
T ss_pred ccCCccceeEEecCccccC-hhHHHHHhhccCccceeE--EEEccccC--cccceEEEEEecHHHHHHHHHHccCcccce
Confidence 3557999999999999976 889999999999999999 55667798 999999999999999999999999998775
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+ -++||.+.
T Consensus 259 L----ILrvEwsk 267 (270)
T KOG0122|consen 259 L----ILRVEWSK 267 (270)
T ss_pred E----EEEEEecC
Confidence 2 34555543
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=7.6e-16 Score=149.65 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=106.3
Q ss_pred HHhhcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC
Q 015240 128 RWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKK 206 (411)
Q Consensus 128 ~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ 206 (411)
.+-..++||||++.|.+.+.+++++++|.+.. .++.+.+.+++. .. ......+|||+|||..+
T Consensus 142 d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p--~~--------------~~~~~~~lfV~nLp~~v 205 (346)
T TIGR01659 142 DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP--GG--------------ESIKDTNLYVTNLPRTI 205 (346)
T ss_pred cCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc--cc--------------cccccceeEEeCCCCcc
Confidence 33445899999999999999999999998766 555555554321 10 01123579999999986
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCCC
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S~~ 286 (411)
+ +++|+++|..+|.|++++ ...++.|+ .+||||||+|.+.++|.++|+.|||+.+.++ .++++|.+++.+...
T Consensus 206 t-ee~L~~~F~~fG~V~~v~--i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~--~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 206 T-DDQLDTIFGKYGQIVQKN--ILRDKLTG--TPRGVAFVRFNKREEAQEAISALNNVIPEGG--SQPLTVRLAEEHGKA 278 (346)
T ss_pred c-HHHHHHHHHhcCCEEEEE--EeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCccccc
Confidence 5 889999999999999998 44566686 8999999999999999999999999988765 466777777765443
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=6.5e-15 Score=141.41 Aligned_cols=137 Identities=17% Similarity=0.284 Sum_probs=101.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.+++|||++.|++...++++|. |.+.. .++++.+........... ..++......+..-+|||+|||...+ +.
T Consensus 128 ~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~----~~~~~~~~~~p~~~~l~v~nl~~~~t-e~ 201 (457)
T TIGR01622 128 RRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAA----KAATHQPGDIPNFLKLYVGNLHFNIT-EQ 201 (457)
T ss_pred CCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhh----hcccccCCCCCCCCEEEEcCCCCCCC-HH
Confidence 4789999999999999999995 44433 666666553322111100 00111112234478999999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~ 282 (411)
+|+++|..+|.|..|+ ...++.|| .|||||||+|.+.++|.++++.|||..|.+ +.|+|..+..
T Consensus 202 ~l~~~f~~~G~i~~v~--~~~d~~~g--~~~g~afV~f~~~e~A~~A~~~l~g~~i~g----~~i~v~~a~~ 265 (457)
T TIGR01622 202 ELRQIFEPFGDIEDVQ--LHRDPETG--RSKGFGFIQFHDAEEAKEALEVMNGFELAG----RPIKVGYAQD 265 (457)
T ss_pred HHHHHHHhcCCeEEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHhcCCcEECC----EEEEEEEccC
Confidence 9999999999999998 45566676 899999999999999999999999988863 5677777663
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=2.1e-15 Score=139.17 Aligned_cols=132 Identities=19% Similarity=0.278 Sum_probs=104.9
Q ss_pred hhcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 015240 130 LENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI 208 (411)
Q Consensus 130 l~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni 208 (411)
..+++||||++.|++.+.++++|++|.+.. .++.+.+.++++.. ....+.+|||+|||...+
T Consensus 40 ~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~----------------~~~~~~~l~v~~l~~~~~- 102 (352)
T TIGR01661 40 VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS----------------DSIKGANLYVSGLPKTMT- 102 (352)
T ss_pred CCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc----------------cccccceEEECCccccCC-
Confidence 346899999999999999999999999877 67777666432110 012345899999999865
Q ss_pred HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 015240 209 HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 209 ~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S 284 (411)
.++|+.+|..+|.|+.++. ..++.|+ .+||||||+|.+.++|.++|+.|||..+.+. ..++++..++..+
T Consensus 103 ~~~l~~~f~~~G~i~~~~~--~~~~~~~--~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~~~~ 172 (352)
T TIGR01661 103 QHELESIFSPFGQIITSRI--LSDNVTG--LSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFANNPS 172 (352)
T ss_pred HHHHHHHHhccCCEEEEEE--EecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCCCC
Confidence 8899999999999999883 4444465 8899999999999999999999999987652 2467777777655
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=3.7e-15 Score=155.25 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=103.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.++||||++.|.+.+.+++++++|.+.. .+|.+-++...+.|. ..+.. +. .........+|||+|||...+ ..
T Consensus 146 gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~-a~~~~-~~---~~~~~~~~~rLfVgnLp~~vt-ee 219 (612)
T TIGR01645 146 GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQ-AQPII-DM---VQEEAKKFNRIYVASVHPDLS-ET 219 (612)
T ss_pred CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccc-ccccc-cc---ccccccccceEEeecCCCCCC-HH
Confidence 4899999999999999999999998866 777777663222111 11111 00 111223457999999999854 77
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ceeecee
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GKVQKQI 275 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f--gKVEK~i 275 (411)
+|+.+|+.+|.|.+++ ...++.|| .+||||||.|.+.++|.++|+.+||+.|.+ +||.+++
T Consensus 220 dLk~lFs~FG~I~svr--l~~D~~tg--ksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 220 DIKSVFEAFGEIVKCQ--LARAPTGR--GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHhhcCCeeEEE--EEecCCCC--CcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 9999999999999998 45566676 899999999999999999999999999987 6666655
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=4.3e-14 Score=137.19 Aligned_cols=141 Identities=12% Similarity=0.155 Sum_probs=97.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc-CCCCC----CCCC--CCCC------CCCCCCCCCccEE
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN-ELLKP----SPKK--DEPK------KKEPEDMPSGIRV 197 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~-~P~~~----n~~k--~~~a------kk~~~~~~dgvRV 197 (411)
++.+|||++.|.+.+.+.++| +|.+.. .++.+.+...+. .|.+. .... .... ...........+|
T Consensus 220 ~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (509)
T TIGR01642 220 NKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRI 298 (509)
T ss_pred CCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEE
Confidence 478999999999999999999 466533 444444321111 11100 0000 0000 0011123456799
Q ss_pred EEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeee
Q 015240 198 RLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRC 277 (411)
Q Consensus 198 rVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikc 277 (411)
||+|||...+ ..+|+++|+.+|.|..+. ...++.|| .+||||||+|.+.+.|.++|+.|||+.|.+. .|+|
T Consensus 299 ~v~nlp~~~~-~~~l~~~f~~~G~i~~~~--~~~~~~~g--~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----~l~v 369 (509)
T TIGR01642 299 YIGNLPLYLG-EDQIKELLESFGDLKAFN--LIKDIATG--LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----KLHV 369 (509)
T ss_pred EEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEecCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEECCe----EEEE
Confidence 9999999865 889999999999999998 55666686 8999999999999999999999999998753 3455
Q ss_pred eeecC
Q 015240 278 EMVNS 282 (411)
Q Consensus 278 e~~~~ 282 (411)
+.+..
T Consensus 370 ~~a~~ 374 (509)
T TIGR01642 370 QRACV 374 (509)
T ss_pred EECcc
Confidence 55543
No 8
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.51 E-value=9.6e-14 Score=119.84 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=75.7
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
....+..+.+|||+|||.... +.+|+++|..+|.|.+++ ...+++|+ .|||||||+|++.++|.++|+.+||+.|
T Consensus 27 ~~~~~~~~~~lfVgnL~~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 27 LGSLRLMSTKLFIGGLSWGTD-DASLRDAFAHFGDVVDAK--VIVDRETG--RSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred cccccCCCCEEEEeCCCCCCC-HHHHHHHHhcCCCeEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 334556788999999999864 889999999999999998 56677786 9999999999999999999999999998
Q ss_pred ccceeeceeeeeeecCCCC
Q 015240 267 AFGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S~ 285 (411)
.+ +.++|+.+.....
T Consensus 102 ~G----r~l~V~~a~~~~~ 116 (144)
T PLN03134 102 NG----RHIRVNPANDRPS 116 (144)
T ss_pred CC----EEEEEEeCCcCCC
Confidence 73 4677777665443
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=5.4e-14 Score=139.93 Aligned_cols=141 Identities=16% Similarity=0.264 Sum_probs=99.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-H----hhhhhhcccccCCCCCCCCCC--CCCCCCCCCCCCccEEEEcCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-E----AQMANINKLENELLKPSPKKD--EPKKKEPEDMPSGIRVRLLNLPK 204 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~----araaNld~~~~~P~~~n~~k~--~~akk~~~~~~dgvRVrVGNLPk 204 (411)
++++|||++.|.+.+.+.+++++|.+.. . ++.+-+..+..........+. ...+........+.+|||+|||.
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 295 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDD 295 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCC
Confidence 4789999999999999999999998765 3 333322222111110000000 00001112245788999999999
Q ss_pred CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 015240 205 KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 205 k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~ 282 (411)
..+ +.+|+++|..+|.|.+++ +..+ .|| .+||||||+|.+.++|.++|+.+||..|.+ |++.|.++..
T Consensus 296 ~~~-~~~L~~~F~~~G~i~~~~--i~~d-~~g--~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g----k~l~V~~a~~ 363 (562)
T TIGR01628 296 TVT-DEKLRELFSECGEITSAK--VMLD-EKG--VSRGFGFVCFSNPEEANRAVTEMHGRMLGG----KPLYVALAQR 363 (562)
T ss_pred ccC-HHHHHHHHHhcCCeEEEE--EEEC-CCC--CcCCeEEEEeCCHHHHHHHHHHhcCCeeCC----ceeEEEeccC
Confidence 864 889999999999999998 4444 465 889999999999999999999999988764 5666665553
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.1e-13 Score=140.24 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=103.3
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCC-CCC--CC-------CCCCCCCccEEEEcC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKD-EPK--KK-------EPEDMPSGIRVRLLN 201 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~-~~a--kk-------~~~~~~dgvRVrVGN 201 (411)
..||||++.|.=..-..++|+|..++. .||-+|++.++.++-.-.-.+. ..+ +. .+-+-.+--||-|.|
T Consensus 45 ~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRN 124 (678)
T KOG0127|consen 45 EKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRN 124 (678)
T ss_pred cccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeec
Confidence 579999999999999999999999988 8999999988887653211111 000 00 111222477999999
Q ss_pred CCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 202 LPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 202 LPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
||.++. .-||+-+|..||-|+-|.++.-.+ ++ +| |||||+|....+|..+++.|||..|.+-
T Consensus 125 LPf~~k-~~dLk~vFs~~G~V~Ei~IP~k~d--gk--lc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR 186 (678)
T KOG0127|consen 125 LPFKCK-KPDLKNVFSNFGKVVEIVIPRKKD--GK--LC-GFAFVQFKEKKDAEKALEFFNGNKIDGR 186 (678)
T ss_pred CCcccC-cHHHHHHHhhcceEEEEEcccCCC--CC--cc-ceEEEEEeeHHHHHHHHHhccCceecCc
Confidence 999975 559999999999999999884333 54 78 9999999999999999999999998853
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=3.8e-13 Score=133.91 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=93.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.|++|||++.|.+..-++++|+++.+.. .++.+-+..+..+|... .....+|||+|||.+.+ .+
T Consensus 39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~--------------~~~~~~vfV~nLp~~~~-~~ 103 (562)
T TIGR01628 39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLR--------------RSGVGNIFVKNLDKSVD-NK 103 (562)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccccccc--------------ccCCCceEEcCCCccCC-HH
Confidence 4789999999999999999999998865 66666665543333211 11223799999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+|.++|..+|.|++++... +. +| ..||||||.|.+.++|.++|+++||..+.+
T Consensus 104 ~L~~~F~~~G~i~~~~i~~--~~-~g--~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 104 ALFDTFSKFGNILSCKVAT--DE-NG--KSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred HHHHHHHhcCCcceeEeee--cC-CC--CcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 9999999999999998443 32 33 679999999999999999999999998875
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=1.4e-12 Score=93.23 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=58.3
Q ss_pred EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
|||+|||..++ +.+|+.+|..+|.+..+...... + +.-+|||||+|.+.++|.++++.+||+.|.+-
T Consensus 1 l~v~nlp~~~t-~~~l~~~f~~~g~i~~~~~~~~~---~--~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVT-EEELRDFFSQFGKIESIKVMRNS---S--GKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSS-HHHHHHHHHTTSTEEEEEEEEET---T--SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCC-HHHHHHHHHHhhhcccccccccc---c--ccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999976 88999999999999998855442 2 25699999999999999999999999998753
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.30 E-value=7.6e-12 Score=121.94 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=72.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.....+.+|||+|||.+.+ +++|+++|..+|.|++++ ...+++|+ .+||||||+|.++++|.++|+.|||+.|..
T Consensus 102 ~~~~~~~~LfVgnLp~~~t-e~~L~~lF~~~G~V~~v~--i~~d~~tg--~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMT-DRELYALFRTIGPINTCR--IMRDYKTG--YSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--ccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 4456789999999999865 889999999999999998 56777787 899999999999999999999999999873
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+.|++..+.
T Consensus 177 ----r~i~V~~a~ 185 (346)
T TIGR01659 177 ----KRLKVSYAR 185 (346)
T ss_pred ----ceeeeeccc
Confidence 556666554
No 14
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=8.6e-12 Score=102.46 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=63.5
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+|||||||.+.+ ..+|..+|+.+|.+.+|+ ...++.|| .|||||||.|.+.++|..+|+.++|..|.+
T Consensus 115 ~~~l~v~nL~~~~~-~~~l~~~F~~~g~~~~~~--~~~d~~~~--~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~ 184 (306)
T COG0724 115 NNTLFVGNLPYDVT-EEDLRELFKKFGPVKRVR--LVRDRETG--KSRGFAFVEFESEESAEKAIEELNGKELEG 184 (306)
T ss_pred CceEEEeCCCCCCC-HHHHHHHHHhcCceeEEE--eeeccccC--ccCceEEEEecCHHHHHHHHHHcCCCeECC
Confidence 79999999999854 889999999999999998 45555686 999999999999999999999999999985
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=7.3e-12 Score=122.00 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=114.5
Q ss_pred cccccchHHHHHH------hhcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCC
Q 015240 117 EGMMISFGKMRRW------LENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPE 189 (411)
Q Consensus 117 E~~~~~~~~M~~w------l~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~ 189 (411)
-+.|.||+++-+= --.|++|||.+-|+...-+|.++++|.+.+ -+|.|--|-++-.|...|-+...=-.---.
T Consensus 80 r~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQ 159 (321)
T KOG0148|consen 80 REAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQ 159 (321)
T ss_pred HHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhcc
Confidence 3566676654221 123999999999999999999999999988 557777777776674433322000000234
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
-+++..+|||||.+.-.+ +++|+..|..+|.|.-|| +-++ +|||||-|.+.|.|+++|..+||.+|.+
T Consensus 160 ssp~NtsVY~G~I~~~lt-e~~mr~~Fs~fG~I~EVR--vFk~--------qGYaFVrF~tkEaAahAIv~mNntei~G- 227 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLT-EDLMRQTFSPFGPIQEVR--VFKD--------QGYAFVRFETKEAAAHAIVQMNNTEIGG- 227 (321)
T ss_pred CCCCCceEEeCCcCcccc-HHHHHHhcccCCcceEEE--Eecc--------cceEEEEecchhhHHHHHHHhcCceeCc-
Confidence 568999999999999643 889999999999998887 5555 8999999999999999999999999984
Q ss_pred eeeceeeeeeec
Q 015240 270 KVQKQIRCEMVN 281 (411)
Q Consensus 270 KVEK~ikce~~~ 281 (411)
...||--=+
T Consensus 228 ---~~VkCsWGK 236 (321)
T KOG0148|consen 228 ---QLVRCSWGK 236 (321)
T ss_pred ---eEEEEeccc
Confidence 567886543
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.6e-11 Score=89.99 Aligned_cols=70 Identities=31% Similarity=0.475 Sum_probs=59.0
Q ss_pred EEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 197 VRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 197 VrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
|||+|||...+ ..||..+|..+|.|..++.. .++. | .++|||||+|.+.++|.++++.++|..|.+-+|+
T Consensus 1 v~i~nlp~~~~-~~~l~~~f~~~g~v~~v~~~--~~~~-~--~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTT-EEDLRNFFSRFGPVEKVRLI--KNKD-G--QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT---HHHHHHHCTTSSBEEEEEEE--ESTT-S--SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCC-HHHHHHHHHhcCCcceEEEE--eeec-c--ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999865 78999999999999888844 3432 3 8899999999999999999999999998876553
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=1.6e-11 Score=127.51 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=96.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH---HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI 208 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr---~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni 208 (411)
.|+|||+.+.|.+...+.++++.+...+ .++.+.++.+.+... . ..+.....-+|||+|||...+
T Consensus 179 gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~--~---------d~~~~~~~k~LfVgNL~~~~t- 246 (578)
T TIGR01648 179 KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEE--V---------DEDVMAKVKILYVRNLMTTTT- 246 (578)
T ss_pred CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccc--c---------cccccccccEEEEeCCCCCCC-
Confidence 4789999999999999999998876433 466677665432211 0 111223345899999999865
Q ss_pred HHHHHHHhccC--CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCC
Q 015240 209 HRDLKSAFKGV--PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 209 ~kDL~~aFk~v--GgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S~ 285 (411)
+.+|+++|..+ |.|.+|+ +.||||||+|++.++|.++|+.+||+.|. .+.|+|+.+...+.
T Consensus 247 ee~L~~~F~~f~~G~I~rV~------------~~rgfAFVeF~s~e~A~kAi~~lnG~~i~----Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVERVK------------KIRDYAFVHFEDREDAVKAMDELNGKELE----GSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHHHhcCCCceEEEE------------eecCeEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEccCCCc
Confidence 88999999999 9999885 34789999999999999999999999987 46677777765443
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.27 E-value=1.2e-11 Score=122.88 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=101.7
Q ss_pred cccchHHHHHHhhcCCCCccccceecchHHHHHHHHHHh--hH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCC-Cc
Q 015240 119 MMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQ--SR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMP-SG 194 (411)
Q Consensus 119 ~~~~~~~M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~--sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~-dg 194 (411)
.|-+|+.+..-.--+.+|||++.|++.+.+++|++.|+. .. .++++-+.++........... ..+...+ .-
T Consensus 22 ~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~-----~~~~~~~~~~ 96 (481)
T TIGR01649 22 ALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNS-----DFDSAGPNKV 96 (481)
T ss_pred HHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCC-----cccCCCCCce
Confidence 344555554332336889999999999999999998753 23 777777777654322111000 0011112 33
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ 274 (411)
.+|+|+|||...+ ..+|+++|..+|.|.+|++ ..+ .+ +|||||.|.+.++|.++|+.|||+.|..| ...
T Consensus 97 ~~v~v~nl~~~vt-~~~L~~~F~~~G~V~~v~i--~~~--~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~ 165 (481)
T TIGR01649 97 LRVIVENPMYPIT-LDVLYQIFNPYGKVLRIVT--FTK--NN----VFQALVEFESVNSAQHAKAALNGADIYNG--CCT 165 (481)
T ss_pred EEEEEcCCCCCCC-HHHHHHHHhccCCEEEEEE--Eec--CC----ceEEEEEECCHHHHHHHHHHhcCCcccCC--ceE
Confidence 5899999998754 7789999999999999974 222 32 58999999999999999999999999754 234
Q ss_pred eeeeeec
Q 015240 275 IRCEMVN 281 (411)
Q Consensus 275 ikce~~~ 281 (411)
++|+.+.
T Consensus 166 l~v~~sk 172 (481)
T TIGR01649 166 LKIEYAK 172 (481)
T ss_pred EEEEEec
Confidence 4444443
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.24 E-value=3.1e-11 Score=117.43 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=99.3
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCC-------CCCC-CC----CCCCCccEEEE
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDE-------PKKK-EP----EDMPSGIRVRL 199 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~-------~akk-~~----~~~~dgvRVrV 199 (411)
+++|||++.|.+...+++++++|.+.. .++.+.+.++..+.......... .... .. ....+.-.|+|
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l 414 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQL 414 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEe
Confidence 589999999999999999999998866 66666666655433222111100 0000 00 00124567899
Q ss_pred cCCCCCCc---------hHHHHHHHhccCCCeeEEeeccc-cCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 200 LNLPKKKN---------IHRDLKSAFKGVPGIINIIPVVS-GNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 200 GNLPkk~n---------i~kDL~~aFk~vGgvisIkpav~-~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.||+.... |.+||+++|..+|.|++|+++.. .+..++ .++|||||+|++.++|.+||+.|||..|.+
T Consensus 415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g- 491 (509)
T TIGR01642 415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNST--PGVGKVFLEYADVRSAEKAMEGMNGRKFND- 491 (509)
T ss_pred ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcC--CCcceEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 99975211 24689999999999999987643 343343 779999999999999999999999999874
Q ss_pred eeeceeeeeee
Q 015240 270 KVQKQIRCEMV 280 (411)
Q Consensus 270 KVEK~ikce~~ 280 (411)
+.|.|...
T Consensus 492 ---r~v~~~~~ 499 (509)
T TIGR01642 492 ---RVVVAAFY 499 (509)
T ss_pred ---eEEEEEEe
Confidence 45555543
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=5.9e-11 Score=118.10 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=100.1
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCC-C---------CC------CCCCC-----CCCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSP-K---------KD------EPKKK-----EPEDM 191 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~-~---------k~------~~akk-----~~~~~ 191 (411)
.+|||.+.+.+...++++|+.|.+.. .++.+.+.+++........ . ++ ++.+. .....
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 47999999999999999999999987 8888888776543211000 0 00 11111 01123
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCC--eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc-
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPG--IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF- 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg--visIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f- 268 (411)
+++.+|+|+|||...+ .++|+++|+.+|. +.+|++. ..+++ -||||||.|.+.++|.++|..+||+.|..
T Consensus 392 ~ps~~L~v~NLp~~~t-ee~L~~lF~~~G~~~i~~ik~~---~~~~~---~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~ 464 (481)
T TIGR01649 392 PPSATLHLSNIPLSVS-EEDLKELFAENGVHKVKKFKFF---PKDNE---RSKMGLLEWESVEDAVEALIALNHHQLNEP 464 (481)
T ss_pred CCCcEEEEecCCCCCC-HHHHHHHHHhcCCccceEEEEe---cCCCC---cceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence 5788999999999865 8899999999998 7777632 22222 38999999999999999999999999875
Q ss_pred -ceeeceeeeee
Q 015240 269 -GKVQKQIRCEM 279 (411)
Q Consensus 269 -gKVEK~ikce~ 279 (411)
|++--.+|+.-
T Consensus 465 ~~~~~~~lkv~f 476 (481)
T TIGR01649 465 NGSAPYHLKVSF 476 (481)
T ss_pred CCCccceEEEEe
Confidence 44333455443
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=2e-11 Score=126.43 Aligned_cols=74 Identities=18% Similarity=0.311 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCH--HHHHHHHHHhCCceecc-
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESE--DYATRFVQLFSRQIIAF- 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~se--edA~rfIEk~NGq~~~f- 268 (411)
-.+.|||||||+...+ +.||+++|..+|.|.++.+. |+|| ||||||+|.+. ..+.++|+.|||..+++
T Consensus 8 ~~gMRIYVGNLSydVT-EDDLravFSeFGsVkdVEIp----RETG----RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 8 GGGVRLHVGGLGESVG-RDDLLKIFSPMGTVDAVEFV----RTKG----RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred CcceEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEEEe----cccC----CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 4679999999999854 88999999999999999865 7787 99999999987 78999999999999999
Q ss_pred -ceeece
Q 015240 269 -GKVQKQ 274 (411)
Q Consensus 269 -gKVEK~ 274 (411)
+||+++
T Consensus 79 ~LKVNKA 85 (759)
T PLN03213 79 RLRLEKA 85 (759)
T ss_pred eeEEeec
Confidence 666664
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.6e-10 Score=78.78 Aligned_cols=68 Identities=28% Similarity=0.355 Sum_probs=58.1
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
+|+|+|||...+ ..+|+.+|..+|.+..++.. .++ +.++|+|||+|.+.+.|.++++.++|..|.+.+
T Consensus 1 ~v~i~~l~~~~~-~~~l~~~~~~~g~v~~~~~~--~~~----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVT-EEDLKELFSKFGPIESVKIP--KDT----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCC-HHHHHHHHHhcCCEEEEEEe--cCC----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 689999999864 78999999999999998743 222 367999999999999999999999999987543
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.09 E-value=2.1e-10 Score=120.25 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=65.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...-||||||||.+.+ +.+|+.+|..+|.|.+|+ ...++.|| ..||||||+|.+.++|.++|+.+||+.|.+
T Consensus 105 ~~~~rLfVGnLp~~~t-Ee~Lr~lF~~fG~I~sV~--I~~D~~Tg--kskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 105 AIMCRVYVGSISFELR-EDTIRRAFDPFGPIKSIN--MSWDPATG--KHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred cCCCEEEEcCCCCCCC-HHHHHHHHHccCCEEEEE--EeecCCCC--CcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 3567999999999865 889999999999999998 56688887 899999999999999999999999999875
No 24
>smart00360 RRM RNA recognition motif.
Probab=99.09 E-value=4.5e-10 Score=77.15 Aligned_cols=65 Identities=31% Similarity=0.432 Sum_probs=55.9
Q ss_pred EcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 199 LLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 199 VGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
|+|||...+ ..+|+.+|..+|.|..+++. .++.|+ .++|||||+|.+.+.|.++++.++|..|.+
T Consensus 1 i~~l~~~~~-~~~l~~~f~~~g~v~~~~i~--~~~~~~--~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVT-EEELRELFSKFGKIESVRLV--RDKDTG--KSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccC-HHHHHHHHHhhCCEeEEEEE--eCCCCC--CCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 689999864 78999999999999998743 444454 889999999999999999999999999864
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3e-10 Score=112.09 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=86.0
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHH
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDL 212 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kDL 212 (411)
+-||||+-|-+..-++++|++|...- .++++-+-.+.-+|. . |||.||++..+ .++|
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~---------------~------~~i~nl~~~~~-~~~~ 93 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS---------------L------VFIKNLDESID-NKSL 93 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc---------------e------eeecCCCcccC-cHHH
Confidence 88999999999999999997776544 333333221111111 1 99999999854 8899
Q ss_pred HHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 213 KSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 213 ~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..+|..||.|++.+.+...+ ..||| ||.|++++.|+++|+++||..+.+-+|
T Consensus 94 ~d~f~~~g~ilS~kv~~~~~------g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 94 YDTFSEFGNILSCKVATDEN------GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred HHHHHhhcCeeEEEEEEcCC------Cceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 99999999999999665544 37999 999999999999999999999886433
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.05 E-value=5.3e-10 Score=107.81 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=62.9
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+.-+|||+|||...+ .++|+++|..+|.|..|+ ...++.|| .+||||||.|.+.++|.++|+ +||+.|.+
T Consensus 88 ~~~~l~V~nlp~~~~-~~~l~~~F~~~G~v~~v~--i~~d~~~~--~skg~afVeF~~~e~A~~Al~-l~g~~~~g 157 (457)
T TIGR01622 88 DDRTVFVLQLALKAR-ERDLYEFFSKVGKVRDVQ--CIKDRNSR--RSKGVAYVEFYDVESVIKALA-LTGQMLLG 157 (457)
T ss_pred CCcEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EeecCCCC--CcceEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 467899999999865 889999999999999998 56777786 899999999999999999997 89999875
No 27
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.99 E-value=1.6e-09 Score=104.10 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=62.9
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
+-+|||||||.+.+ ++||+++|..+|.|.+|++. .++. .+|||||+|++.+.|..+|. +||..|.+ +
T Consensus 4 ~rtVfVgNLs~~tT-E~dLrefFS~~G~I~~V~I~--~d~~-----~~GfAFVtF~d~eaAe~All-LnG~~l~g----r 70 (260)
T PLN03120 4 VRTVKVSNVSLKAT-ERDIKEFFSFSGDIEYVEMQ--SENE-----RSQIAYVTFKDPQGAETALL-LSGATIVD----Q 70 (260)
T ss_pred CCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--ecCC-----CCCEEEEEeCcHHHHHHHHH-hcCCeeCC----c
Confidence 56899999999865 89999999999999999954 4432 37999999999999999995 99999874 4
Q ss_pred eeeeeeecC
Q 015240 274 QIRCEMVNS 282 (411)
Q Consensus 274 ~ikce~~~~ 282 (411)
.++|+.+..
T Consensus 71 ~V~Vt~a~~ 79 (260)
T PLN03120 71 SVTITPAED 79 (260)
T ss_pred eEEEEeccC
Confidence 556666543
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.97 E-value=2.5e-09 Score=111.51 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..+.+|||+|||...+ +.+|..+|..+|.|+.++ +..+ +|| ..||||||+|.+.++|+++|+.+||..|..||
T Consensus 56 ~~~~~lFVgnLp~~~t-Ed~L~~~F~~~G~I~~vr--l~~D-~sG--~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr 128 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLY-EDELVPLFEKAGPIYELR--LMMD-FSG--QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR 128 (578)
T ss_pred CCCCEEEeCCCCCCCC-HHHHHHHHHhhCCEEEEE--EEEC-CCC--CccceEEEEeCCHHHHHHHHHHcCCCeecCCc
Confidence 3578999999999864 889999999999999998 4444 565 78999999999999999999999999987554
No 29
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=4.2e-09 Score=73.11 Aligned_cols=70 Identities=27% Similarity=0.399 Sum_probs=58.7
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+|+|+|||.... ..+|+..|+.+|.+.++... .++.+ ..+|+|||+|.+.+.|.++++.++|..+.+.+|
T Consensus 1 ~i~i~~l~~~~~-~~~i~~~~~~~g~i~~~~~~--~~~~~---~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~ 70 (74)
T cd00590 1 TLFVGNLPPDVT-EEDLRELFSKFGKVESVRIV--RDKDT---KSKGFAFVEFEDEEDAEKALEALNGKELGGRPL 70 (74)
T ss_pred CEEEeCCCCccC-HHHHHHHHHhcCCEEEEEEe--eCCCC---CcceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 589999999854 78999999999999998744 33323 669999999999999999999999998765433
No 30
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=2.9e-09 Score=106.02 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=63.6
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
---||+|.|+|+.-. +.||+++|..||-|+.|. -+.|. | -.||||||||++.++|+|+=++|+|-.|.+-|||
T Consensus 95 ~pkRLhVSNIPFrFR-dpDL~aMF~kfG~VldVE--IIfNE--R--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFR-DPDLRAMFEKFGKVLDVE--IIFNE--R--GSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCceeEeecCCcccc-CccHHHHHHhhCceeeEE--EEecc--C--CCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 346999999999832 669999999999999997 45552 1 4699999999999999999999999999988877
Q ss_pred c
Q 015240 273 K 273 (411)
Q Consensus 273 K 273 (411)
-
T Consensus 168 V 168 (376)
T KOG0125|consen 168 V 168 (376)
T ss_pred E
Confidence 4
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.86 E-value=7.7e-09 Score=98.83 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=63.9
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+.|-+|||+||+.+.. ++||+++|..+|.|.+|++. .++ .|+|||||+|++.+.|..++ .|||+.|.
T Consensus 3 ~~g~TV~V~NLS~~tT-E~dLrefFS~~G~I~~V~I~--~D~-----et~gfAfVtF~d~~aaetAl-lLnGa~l~---- 69 (243)
T PLN03121 3 PGGYTAEVTNLSPKAT-EKDVYDFFSHCGAIEHVEII--RSG-----EYACTAYVTFKDAYALETAV-LLSGATIV---- 69 (243)
T ss_pred CCceEEEEecCCCCCC-HHHHHHHHHhcCCeEEEEEe--cCC-----CcceEEEEEECCHHHHHHHH-hcCCCeeC----
Confidence 5789999999999965 99999999999999999844 333 45799999999999999888 69999987
Q ss_pred eceeeeeeec
Q 015240 272 QKQIRCEMVN 281 (411)
Q Consensus 272 EK~ikce~~~ 281 (411)
+.+|.|.-+.
T Consensus 70 d~~I~It~~~ 79 (243)
T PLN03121 70 DQRVCITRWG 79 (243)
T ss_pred CceEEEEeCc
Confidence 4455555433
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.79 E-value=4.5e-09 Score=109.05 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=90.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccc--cCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLE--NELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIH 209 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~--~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~ 209 (411)
.+++|.+|+.|||...---++.=-++.--|+++=+-.+. .|-+.+. ..+-.+....-+..+||||||=+... +
T Consensus 218 ~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~----s~a~~~k~~~~p~~rl~vgnLHfNit-e 292 (549)
T KOG0147|consen 218 RRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANA----SPALQGKGFTGPMRRLYVGNLHFNIT-E 292 (549)
T ss_pred hhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhc----cccccccccccchhhhhhcccccCch-H
Confidence 379999999999986544333211111122221111000 0001001 01111122333455699999999632 7
Q ss_pred HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 015240 210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 210 kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S 284 (411)
.+|+.+|..+|.|-.|- ...+..|| .||||||++|-..++|..|.+++||..+.+ +.|++++|..+-
T Consensus 293 ~~lr~ifepfg~Ie~v~--l~~d~~tG--~skgfGfi~f~~~~~ar~a~e~lngfelAG----r~ikV~~v~~r~ 359 (549)
T KOG0147|consen 293 DMLRGIFEPFGKIENVQ--LTKDSETG--RSKGFGFITFVNKEDARKALEQLNGFELAG----RLIKVSVVTERV 359 (549)
T ss_pred HHHhhhccCcccceeee--eccccccc--cccCcceEEEecHHHHHHHHHHhccceecC----ceEEEEEeeeec
Confidence 78999999999999997 66777787 999999999999999999999999988774 355666665543
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=8.9e-09 Score=95.68 Aligned_cols=67 Identities=27% Similarity=0.342 Sum_probs=59.5
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+-..+||||||+...+ .+||+.+|..+|.+-+|-.|. |+ -|||||.|++.-+|..+|..|+|..|-+
T Consensus 8 ~~~~kVYVGnL~~~a~-k~eLE~~F~~yG~lrsvWvAr--nP-------PGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRAT-KRELERAFSKYGPLRSVWVAR--NP-------PGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CCCceEEeccCCCCcc-hHHHHHHHHhcCcceeEEEee--cC-------CCceEEeccCcccHHHHHhhcCCccccC
Confidence 3467899999999854 779999999999999998554 54 7999999999999999999999999887
No 34
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=103.86 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
-.|||||+|.+.. +.+|..+|.++|.|++++ .+-|+.|| ..|||||+.|.+.++|.++|+.|||.+|.+-
T Consensus 19 ~~v~vgnip~~~s-e~~l~~~~~~~g~v~s~~--~v~D~~tG--~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 19 SSVFVGNIPYEGS-EEQLLSIFSGVGPVLSFR--LVYDRETG--KPKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cceEecCCCCccc-HHHHHHHHhccCccceee--ecccccCC--CcCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 7899999999854 789999999999999999 77788898 9999999999999999999999999999873
No 35
>smart00361 RRM_1 RNA recognition motif.
Probab=98.77 E-value=2.3e-08 Score=75.79 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=45.8
Q ss_pred HHHHHHHhc----cCCCeeEEe-eccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 209 HRDLKSAFK----GVPGIINII-PVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 209 ~kDL~~aFk----~vGgvisIk-pav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+.||+..|. .+|.|.+|. .....+..|+ ..||||||+|++.++|.++|+.+||+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~--~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYEN--HKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357888887 999999984 3233332224 679999999999999999999999999774
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=9e-09 Score=109.33 Aligned_cols=121 Identities=18% Similarity=0.260 Sum_probs=96.0
Q ss_pred CccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHHHH
Q 015240 136 GFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKS 214 (411)
Q Consensus 136 GFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kDL~~ 214 (411)
|||.+.|++.+.+..+|+-|++.. +|..+-|-.+.+.|+.. ..+ ++... ..+..|.|.|+|+.-. -++++.
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~-~gK----~~~~k--k~~tKIlVRNipFeAt-~rEVr~ 632 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST-VGK----KKSKK--KKGTKILVRNIPFEAT-KREVRK 632 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc-ccc----ccccc--cccceeeeeccchHHH-HHHHHH
Confidence 999999999999999999999888 99888888777555422 122 11111 1288999999999732 679999
Q ss_pred HhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 215 AFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 215 aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+|..+|.+.++++++- +|-.+.||||||+|-+..+|.++++.|.+.-+-+
T Consensus 633 LF~aFGqlksvRlPKK----~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 633 LFTAFGQLKSVRLPKK----IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred HHhcccceeeeccchh----hcchhhccceeeeccCcHHHHHHHHhhcccceec
Confidence 9999999999987654 3435779999999999999999999988555443
No 37
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.6e-08 Score=102.26 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+-|..||||.||++. .+.||.-||..+|.|.-++ .-.++-+| ..||+|||||.+.++|+++|+.||+++|.-|
T Consensus 81 ~~G~EVfvGkIPrD~-~EdeLvplfEkiG~I~elR--LMmD~~sG--~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G-- 153 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDV-FEDELVPLFEKIGKIYELR--LMMDPFSG--DNRGYAFVTFCTKEEAQEAIKELNNYEIRPG-- 153 (506)
T ss_pred CCCceEEecCCCccc-cchhhHHHHHhccceeeEE--EeecccCC--CCcceEEEEeecHHHHHHHHHHhhCccccCC--
Confidence 689999999999985 4999999999999999999 44555576 7899999999999999999999999999988
Q ss_pred eceeeeeeecC
Q 015240 272 QKQIRCEMVNS 282 (411)
Q Consensus 272 EK~ikce~~~~ 282 (411)
|.|+||+--.
T Consensus 154 -K~igvc~Sva 163 (506)
T KOG0117|consen 154 -KLLGVCVSVA 163 (506)
T ss_pred -CEeEEEEeee
Confidence 6788987543
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=3e-08 Score=97.37 Aligned_cols=79 Identities=22% Similarity=0.261 Sum_probs=67.5
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.|-.++|-||..+.. +.-|+++|..||.|++++ ++.+.-| ++|||||||+..+-++|.-+|.-+||..+..--++
T Consensus 277 ~g~ciFvYNLspd~d-e~~LWQlFgpFGAv~nVK--virD~tt--nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDAD-ESILWQLFGPFGAVTNVK--VIRDFTT--NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CeeEEEEEecCCCch-HhHHHHHhCcccceeeEE--EEecCCc--ccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 467899999999854 667999999999999998 7777767 59999999999999999999999999998764444
Q ss_pred ceee
Q 015240 273 KQIR 276 (411)
Q Consensus 273 K~ik 276 (411)
-+.|
T Consensus 352 VsFK 355 (360)
T KOG0145|consen 352 VSFK 355 (360)
T ss_pred EEEe
Confidence 4443
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.56 E-value=2e-07 Score=87.32 Aligned_cols=130 Identities=16% Similarity=0.260 Sum_probs=95.4
Q ss_pred hhcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 015240 130 LENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI 208 (411)
Q Consensus 130 l~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni 208 (411)
..++++|||..-|++...++-++.=|-+-+ =+|++-++++. +.....+.|.+++||||-....
T Consensus 46 v~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas---------------~~~~nl~vganlfvgNLd~~vD- 109 (203)
T KOG0131|consen 46 VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS---------------AHQKNLDVGANLFVGNLDPEVD- 109 (203)
T ss_pred hcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc---------------cccccccccccccccccCcchh-
Confidence 356899999999998888887775555544 44444443222 1112345669999999999632
Q ss_pred HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 015240 209 HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 209 ~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~ 282 (411)
++-|...|..+|-+++- |..--+..|| ..+||||+.|.+.+.++++|+.+|||-+. -+++.+..+..
T Consensus 110 e~~L~dtFsafG~l~~~-P~i~rd~~tg--~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k 176 (203)
T KOG0131|consen 110 EKLLYDTFSAFGVLISP-PKIMRDPDTG--NPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFK 176 (203)
T ss_pred HHHHHHHHHhccccccC-CcccccccCC--CCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEe
Confidence 66899999999987763 3333555576 77999999999999999999999999987 55666666544
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.5e-07 Score=92.43 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=82.1
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
-++|+||.|..... -.+|+++|..||+|-.-+ ++.|.-|+ +.||+|||.|-..++|.++|+++|||=|. -+
T Consensus 62 hfhvfvgdls~eI~-~e~lr~aF~pFGevS~ak--virD~~T~--KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R 132 (321)
T KOG0148|consen 62 HFHVFVGDLSPEID-NEKLREAFAPFGEVSDAK--VIRDMNTG--KSKGYGFVSFPNKEDAENAIQQMNGQWLG----RR 132 (321)
T ss_pred ceeEEehhcchhcc-hHHHHHHhccccccccce--EeecccCC--cccceeEEeccchHHHHHHHHHhCCeeec----cc
Confidence 78999999999732 668999999999999988 88888897 99999999999999999999999999987 56
Q ss_pred eeeeeeecCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCC
Q 015240 274 QIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFEEDPGAHFDDNE 319 (411)
Q Consensus 274 ~ikce~~~~~S~~~~~~~s~~s~~~~p~~~v~~fee~~~~~~d~n~ 319 (411)
+||---+--+. ......| -.|||.-|.+--+|-
T Consensus 133 ~IRTNWATRKp---------~e~n~~~----ltfdeV~NQssp~Nt 165 (321)
T KOG0148|consen 133 TIRTNWATRKP---------SEMNGKP----LTFDEVYNQSSPDNT 165 (321)
T ss_pred eeeccccccCc---------cccCCCC----ccHHHHhccCCCCCc
Confidence 77766655444 1122223 367777665444554
No 41
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=1.9e-07 Score=89.66 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=63.8
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ 274 (411)
..||||+||-.+. ..+|+.-|..||+|+-.. ++.||-|| .|||+|||||.+.+.|.|+.+- -..|-.||.
T Consensus 13 TKifVggL~w~T~-~~~l~~yFeqfGeI~eav--vitd~~t~--rskGyGfVTf~d~~aa~rAc~d--p~piIdGR~--- 82 (247)
T KOG0149|consen 13 TKIFVGGLAWETH-KETLRRYFEQFGEIVEAV--VITDKNTG--RSKGYGFVTFRDAEAATRACKD--PNPIIDGRK--- 82 (247)
T ss_pred EEEEEcCcccccc-hHHHHHHHHHhCceEEEE--EEeccCCc--cccceeeEEeecHHHHHHHhcC--CCCcccccc---
Confidence 4699999999853 558999999999999987 89999998 9999999999999999999984 344445532
Q ss_pred eeeeeecC
Q 015240 275 IRCEMVNS 282 (411)
Q Consensus 275 ikce~~~~ 282 (411)
--|-+|--
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 34666544
No 42
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=6.7e-07 Score=94.03 Aligned_cols=69 Identities=28% Similarity=0.375 Sum_probs=61.2
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
.+....|-+|+|.|||.++. +.+|...|..||.|-... .+.++-|| -.+|=|||.|.+...|..+|+..
T Consensus 286 ~en~~~~~tVFvRNL~fD~t-EEel~~~fskFG~v~ya~--iV~~k~T~--~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTT-EEELKEHFSKFGEVKYAI--IVKDKDTG--HSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccccccceEEEecCCcccc-HHHHHHHHHhhccceeEE--EEeccCCC--CcccceEEEeccHHHHHHHHHhc
Confidence 45556899999999999975 889999999999999888 45666697 88999999999999999999987
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=2.4e-08 Score=93.77 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
-++.-|||||||.+.+ +-||-.+|..+|+++.|. .+.+++|| +.|||||+.+++--..--+|.-|||..|.+
T Consensus 33 kdsA~Iyiggl~~~Lt-EgDil~VFSqyGe~vdin--LiRDk~TG--KSKGFaFLcYEDQRSTILAVDN~NGiki~g 104 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELT-EGDILCVFSQYGEIVDIN--LIRDKKTG--KSKGFAFLCYEDQRSTILAVDNLNGIKILG 104 (219)
T ss_pred ccceEEEECCCccccc-CCcEEEEeeccCceEEEE--EEecCCCC--cccceEEEEecCccceEEEEeccCCceecc
Confidence 4788999999999854 779999999999999998 78888898 999999999999998889999999999985
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.46 E-value=3.6e-07 Score=85.58 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCCccEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.+.-+.+||||||+.+ + +.=|.+||-.+|.|++|+.+.. |-|. +.+||||+.|.++|+|+=+|..||+..+-
T Consensus 5 ~rnqd~tiyvgnld~k--vs~~~l~EL~iqagpVv~i~iPkD--rv~~--~~qGygF~Ef~~eedadYAikiln~VkLY- 77 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEK--VSEELLYELFIQAGPVVNLHIPKD--RVTQ--KHQGYGFAEFRTEEDADYAIKILNMVKLY- 77 (203)
T ss_pred ccCCCceEEEecCCHH--HHHHHHHHHHHhcCceeeeecchh--hhcc--cccceeEEEEechhhhHHHHHHHHHHHhc-
Confidence 3456789999999998 5 4569999999999999996654 4463 78999999999999999999999966654
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
| |+|+.-+|.
T Consensus 78 g---rpIrv~kas 87 (203)
T KOG0131|consen 78 G---RPIRVNKAS 87 (203)
T ss_pred C---ceeEEEecc
Confidence 3 677777665
No 45
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.45 E-value=8.2e-07 Score=63.91 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=43.8
Q ss_pred HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 015240 212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM 279 (411)
Q Consensus 212 L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~ 279 (411)
|..+|..+|.|.+|. ...++ +|||||+|.+.++|..+++.|||..|.+ ++++|+.
T Consensus 1 L~~~f~~fG~V~~i~--~~~~~-------~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIK--IFKKK-------RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEE--EETTS-------TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEEE
T ss_pred ChHHhCCcccEEEEE--EEeCC-------CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 678999999999997 33331 6999999999999999999999999864 3455543
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=5.9e-07 Score=78.70 Aligned_cols=65 Identities=23% Similarity=0.165 Sum_probs=56.4
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
-|||.|||++.. ..+.-++|..+|.|..|++-..++ | ||=|||.+++..+|.++++.++|+.+..
T Consensus 20 iLyirNLp~~IT-seemydlFGkyg~IrQIRiG~~k~--T-----rGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 20 ILYIRNLPFKIT-SEEMYDLFGKYGTIRQIRIGNTKE--T-----RGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred eEEEecCCcccc-HHHHHHHhhcccceEEEEecCccC--c-----CceEEEEehHhhhHHHHHHHhcccccCC
Confidence 489999999833 668999999999999998444443 5 8999999999999999999999999775
No 47
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=3.8e-07 Score=90.48 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=94.1
Q ss_pred CCCCccccceecchHHHHHHHHHHhhHH-------hhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE-------AQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKK 205 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr~-------araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk 205 (411)
++||||.+-++.+.-+.++++.|.+.-. +++.+ +....+.-.++. ......+.++..+..|||.||+..
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk--k~e~~~~l~~~~--~~~~~~~~~~~~~~nl~vknld~~ 281 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK--KSEREAELKRKF--EQEFAKRSVSLQGANLYVKNLDET 281 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc--chhhHHHHhhhh--HhhhhhccccccccccccccCccc
Confidence 7999999999999999999999988442 12222 000000000000 011224556788999999999997
Q ss_pred CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 206 KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 206 ~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.+ +..|+..|..+|.|+++++-+..+- .-+|||||-|.+.++|.+++..+||..+...
T Consensus 282 ~~-~e~L~~~f~~~GeI~s~kv~~~~~g-----~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k 339 (369)
T KOG0123|consen 282 LS-DEKLRKIFSSFGEITSAKVMVDENG-----KSKGFGFVEFSSPEEAKKAMTEMNGRLIGGK 339 (369)
T ss_pred cc-hhHHHHHHhcccceeeEEEEeccCC-----CccceEEEEcCCHHHHHHHHHhhChhhhcCC
Confidence 43 7789999999999999985555443 5699999999999999999999999998853
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=6.3e-07 Score=88.25 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=93.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
-.+-|||.+-..+..-++|++--..+-| ....|- -+-+||... +--+.-|||.-||+.+. .+
T Consensus 80 GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK--VSyARPSs~--------------~Ik~aNLYvSGlPktMt-qk 142 (360)
T KOG0145|consen 80 GQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK--VSYARPSSD--------------SIKDANLYVSGLPKTMT-QK 142 (360)
T ss_pred ccccccceeeecChHHHHHHHhhhcceeeccceEE--EEeccCChh--------------hhcccceEEecCCccch-HH
Confidence 3677999999999988888886555544 211111 112222211 11244699999999875 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
||+++|..+|.||.-++-+... || ..||-||+-|..+++|+++|..|||+.-.+- -.+|.+..+|--
T Consensus 143 elE~iFs~fGrIItSRiL~dqv--tg--~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~--tepItVKFannP 209 (360)
T KOG0145|consen 143 ELEQIFSPFGRIITSRILVDQV--TG--LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC--TEPITVKFANNP 209 (360)
T ss_pred HHHHHHHHhhhhhhhhhhhhcc--cc--eecceeEEEecchhHHHHHHHhccCCCCCCC--CCCeEEEecCCc
Confidence 9999999999999888544444 76 9999999999999999999999999986653 345666666543
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.30 E-value=8.3e-07 Score=87.94 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ 274 (411)
+.|+|||||.+.. +++|+.||..+|-|+--- .+|| +|||+++++..|.-+|.-|+|.++. ++.
T Consensus 3 ~KLFIGNLp~~~~-~~elr~lFe~ygkVlECD--IvKN----------YgFVHiEdktaaedairNLhgYtLh----g~n 65 (346)
T KOG0109|consen 3 VKLFIGNLPREAT-EQELRSLFEQYGKVLECD--IVKN----------YGFVHIEDKTAAEDAIRNLHGYTLH----GVN 65 (346)
T ss_pred cchhccCCCcccc-hHHHHHHHHhhCceEeee--eecc----------cceEEeecccccHHHHhhcccceec----ceE
Confidence 5789999999864 999999999999998875 4444 8999999999999999999999999 678
Q ss_pred eeeeeecCCCCCCCCCCCCC
Q 015240 275 IRCEMVNSSSSNSVDGHSSD 294 (411)
Q Consensus 275 ikce~~~~~S~~~~~~~s~~ 294 (411)
|.+|...++|+.++...--+
T Consensus 66 InVeaSksKsk~stkl~vgN 85 (346)
T KOG0109|consen 66 INVEASKSKSKASTKLHVGN 85 (346)
T ss_pred EEEEeccccCCCccccccCC
Confidence 89999888887777655433
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=1.5e-06 Score=89.55 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=87.0
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhH---HhhhhhhcccccCCCCCCCCCCCCCCC-CCCCCCCccEEEEcCCCCCC
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLENELLKPSPKKDEPKKK-EPEDMPSGIRVRLLNLPKKK 206 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr---~araaNld~~~~~P~~~n~~k~~~akk-~~~~~~dgvRVrVGNLPkk~ 206 (411)
+.|.|||-.+..|+-..+..+=+-|-.++ .+-++-+|-+ +.... ..+...--=-|||.|||..+
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWA------------ep~~e~ded~ms~VKvLYVRNL~~~t 271 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWA------------EPEEEPDEDTMSKVKVLYVRNLMEST 271 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeecc------------CcccCCChhhhhheeeeeeeccchhh
Confidence 45899999999999988877765555444 2222222211 11112 11222333458999999985
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
+ +.-|+++|..+|.|.+|+ +-|-||||+|..+++|-++++-+||+.|.+- .|-|-+|+..
T Consensus 272 T-eE~lk~~F~~~G~veRVk------------k~rDYaFVHf~eR~davkAm~~~ngkeldG~----~iEvtLAKP~ 331 (506)
T KOG0117|consen 272 T-EETLKKLFNEFGKVERVK------------KPRDYAFVHFAEREDAVKAMKETNGKELDGS----PIEVTLAKPV 331 (506)
T ss_pred h-HHHHHHHHHhccceEEee------------cccceeEEeecchHHHHHHHHHhcCceecCc----eEEEEecCCh
Confidence 3 667999999999999997 2255999999999999999999999999864 3445455443
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.28 E-value=2.4e-06 Score=81.21 Aligned_cols=89 Identities=26% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCCCccEEEEcCCCCCCch---HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 015240 189 EDMPSGIRVRLLNLPKKKNI---HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni---~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~ 265 (411)
+..+.+ ||||.||+.+.+. .+-|..||..+|.|+-|. +. || ++-||=|||.|++.+.|-+++..++|..
T Consensus 5 ~~~pn~-TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~--a~---kt--~KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 5 SVNPNG-TLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS--AF---KT--PKMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred ccCCCc-eEeehhccccccHHHHHHHHHHHHHhhCCeEEEE--ec---CC--CCccCceEEEecChhHHHHHHHHhcCCc
Confidence 345566 9999999998543 223555999999999996 33 34 3779999999999999999999999999
Q ss_pred eccceeeceeeeeeecCCCCCCCC
Q 015240 266 IAFGKVQKQIRCEMVNSSSSNSVD 289 (411)
Q Consensus 266 ~~fgKVEK~ikce~~~~~S~~~~~ 289 (411)
|- .|+++++-|...|..-..
T Consensus 77 Fy----gK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 77 FY----GKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred cc----CchhheecccCccchhhc
Confidence 65 577777777776665554
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=1e-06 Score=87.00 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.+.|+|-.|+|-+||++.. +.+|-..|-.||.||+-+ +--||-|. ..|-||||.|.+.-.|.++|..+||+.|.-
T Consensus 280 reGPeGCNlFIYHLPQEFg-DaEliQmF~PFGhivSaK--VFvDRATN--QSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFG-DAELIQMFLPFGHIVSAK--VFVDRATN--QSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hcCCCcceEEEEeCchhhc-cHHHHHHhccccceeeee--eeehhccc--cccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 4568999999999999833 889999999999999998 77888894 888899999999999999999999999986
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=1e-06 Score=83.43 Aligned_cols=72 Identities=25% Similarity=0.212 Sum_probs=60.7
Q ss_pred ccEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ce
Q 015240 194 GIRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GK 270 (411)
Q Consensus 194 gvRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f--gK 270 (411)
.-++||||||-+ | ++|++.||-.+|.|.-|. .+|+ |-.-+||||.|++.-+|+.+|..-+|..+-+ ++
T Consensus 6 ~~~iyvGNLP~d--iRekeieDlFyKyg~i~~ie---LK~r----~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLR 76 (241)
T KOG0105|consen 6 SRRIYVGNLPGD--IREKEIEDLFYKYGRIREIE---LKNR----PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLR 76 (241)
T ss_pred cceEEecCCCcc--hhhccHHHHHhhhcceEEEE---eccC----CCCCCeeEEEecCccchhhhhhcccccccCcceEE
Confidence 458999999997 6 789999999999999994 5565 2336799999999999999999999999886 55
Q ss_pred eece
Q 015240 271 VQKQ 274 (411)
Q Consensus 271 VEK~ 274 (411)
||-+
T Consensus 77 VEfp 80 (241)
T KOG0105|consen 77 VEFP 80 (241)
T ss_pred EEec
Confidence 5543
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.4e-06 Score=89.69 Aligned_cols=122 Identities=15% Similarity=0.193 Sum_probs=89.5
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
-+-++|.=.+++|+..-++++....--- +.=|.-.-|.+-..|-..-++.++...||||-|+|+++ +.
T Consensus 72 t~~s~gcCFv~~~trk~a~~a~~Alhn~-----------ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-e~ 139 (510)
T KOG0144|consen 72 TGQSKGCCFVKYYTRKEADEAINALHNQ-----------KTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCT-EN 139 (510)
T ss_pred cCcccceEEEEeccHHHHHHHHHHhhcc-----------cccCCCCcceeecccchhhhccccchhhhhhhcccccc-HH
Confidence 4578999999999998888777443221 11233233332000111112235788999999999987 99
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
|++++|..||-|--+++....+ .+|||-|||+|.+.+.|-.+|+.+||..-+-|
T Consensus 140 evr~iFs~fG~Ied~~ilrd~~-----~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 140 EVREIFSRFGHIEDCYILRDPD-----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred HHHHHHHhhCccchhhheeccc-----ccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 9999999999999998666555 48999999999999999999999999876654
No 55
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.18 E-value=2.3e-06 Score=81.96 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=64.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...-+.|.|-||-.-+. ..||..+|+..|.|.-|+++.... |+ ..||||||-|....+|..+++.+.|..+.+
T Consensus 10 v~gm~SLkVdNLTyRTs-pd~LrrvFekYG~vgDVyIPrdr~--Tr--~sRgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTS-PDDLRRVFEKYGRVGDVYIPRDRY--TR--QSRGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred cccceeEEecceeccCC-HHHHHHHHHHhCcccceecccccc--cc--cccceeEEEeeecchHHHHHHhhcceeecc
Confidence 34557899999999764 789999999999999999776555 87 889999999999999999999999999886
No 56
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.16 E-value=3.1e-06 Score=77.13 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=77.6
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
++.++.+|--|+|++.-.+.. +.|+...|..+|.|-+|. ...+|.|| -.||+|.|.+++-++|.++|+.+||..+
T Consensus 65 gPqrSVEGwIi~VtgvHeEat-Eedi~d~F~dyGeiKNih--LNLDRRtG--y~KGYaLvEYet~keAq~A~~~~Ng~~l 139 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVHEEAT-EEDIHDKFADYGEIKNIH--LNLDRRTG--YVKGYALVEYETLKEAQAAIDALNGAEL 139 (170)
T ss_pred CCccceeeEEEEEeccCcchh-HHHHHHHHhhccccccee--eccccccc--cccceeeeehHhHHHHHHHHHhccchhh
Confidence 667788999999999999853 789999999999999998 66778897 9999999999999999999999999999
Q ss_pred ccceeeceeeeeeecCCC
Q 015240 267 AFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S 284 (411)
++-.|+ .-.|.+.+.+
T Consensus 140 l~q~v~--VDw~Fv~gp~ 155 (170)
T KOG0130|consen 140 LGQNVS--VDWCFVKGPE 155 (170)
T ss_pred hCCcee--EEEEEecCCc
Confidence 985543 3345555443
No 57
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.14 E-value=5.2e-06 Score=78.63 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=81.2
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
..--+||+.+|.-.. ...+...|+.+||.++.+ -.+.|++|| -.||||||-|++.++|.=+-|-+|++-++ |
T Consensus 48 ~~g~~~~~~~p~g~~-e~~~~~~~~q~~g~v~r~-rlsRnkrTG--NSKgYAFVEFEs~eVA~IaAETMNNYLl~----e 119 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFF-ETEILNYFRQFGGTVTRF-RLSRNKRTG--NSKGYAFVEFESEEVAKIAAETMNNYLLM----E 119 (214)
T ss_pred Cccceeecccccchh-HHHHhhhhhhcCCeeEEE-EeecccccC--CcCceEEEEeccHHHHHHHHHHhhhhhhh----h
Confidence 344589999999742 778999999996655554 255899998 99999999999999999999999999876 8
Q ss_pred ceeeeeeecCCCCCCCCCCCCCCCCCCCcccccccc
Q 015240 273 KQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFE 308 (411)
Q Consensus 273 K~ikce~~~~~S~~~~~~~s~~s~~~~p~~~v~~fe 308 (411)
+.+.|-+....-.......+...+.--|..+|+.=.
T Consensus 120 ~lL~c~vmppe~~v~~~~~k~~~~~~~~~~~~~~k~ 155 (214)
T KOG4208|consen 120 HLLECHVMPPEQKVEKNLKKVSGTPFKPGKTVPIKR 155 (214)
T ss_pred heeeeEEeCchhhhhhhhhhhcCCcCCCCCcccccc
Confidence 899999988774444444444444444444554433
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=3e-06 Score=87.29 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=69.2
Q ss_pred CCCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 015240 186 KEPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 186 k~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~ 265 (411)
.+....++|--++|.|||++- -++||-+.|..||+|++.+ +--++-|+ ..|=|+||++++.-.|..+|..+||..
T Consensus 416 ~~q~eGpeGanlfiyhlPqef-gdq~l~~~f~pfG~Vlsak--vfidk~tn--lskcfgfvSyen~~sa~~aI~amngfQ 490 (510)
T KOG0144|consen 416 NGQVEGPEGANLFIYHLPQEF-GDQDLIATFQPFGGVLSAK--VFIDKVTN--LSKCFGFVSYENAQSAQNAISAMNGFQ 490 (510)
T ss_pred CccccCCCccceeeeeCchhh-hhHHHHHHhccccceeEEE--EEEecccC--HhhhcCcccccchhhhHHHHHHhcchh
Confidence 355667899999999999983 2999999999999999998 66666686 888899999999999999999999999
Q ss_pred ecc
Q 015240 266 IAF 268 (411)
Q Consensus 266 ~~f 268 (411)
|..
T Consensus 491 ig~ 493 (510)
T KOG0144|consen 491 IGS 493 (510)
T ss_pred hcc
Confidence 885
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=8.9e-06 Score=73.50 Aligned_cols=78 Identities=27% Similarity=0.342 Sum_probs=69.0
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.+.+||||||+.-+. +.-+.+||...|.|-+|.--...++|| -| ||.||-|-+.++|..++.-+||..+- +
T Consensus 35 ~S~tvyVgNlSfytt-EEqiyELFs~cG~irriiMGLdr~kkt---pC-GFCFVeyy~~~dA~~AlryisgtrLd----d 105 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTT-EEQIYELFSKCGDIRRIIMGLDRFKKT---PC-GFCFVEYYSRDDAEDALRYISGTRLD----D 105 (153)
T ss_pred hcceEEEeeeeeeec-HHHHHHHHHhccchheeEeccccCCcC---cc-ceEEEEEecchhHHHHHHHhccCccc----c
Confidence 578999999999864 777999999999999999888899888 44 99999999999999999999999887 6
Q ss_pred ceeeeee
Q 015240 273 KQIRCEM 279 (411)
Q Consensus 273 K~ikce~ 279 (411)
++|++..
T Consensus 106 r~ir~D~ 112 (153)
T KOG0121|consen 106 RPIRIDW 112 (153)
T ss_pred cceeeec
Confidence 7777643
No 60
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=1.4e-05 Score=85.64 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=106.1
Q ss_pred CccccccccchHHHHHHhhcCCCCc-cccceecchHHHHHHHHHHhhH-Hhhhh--------------hhcccccCCCCC
Q 015240 113 NDEDEGMMISFGKMRRWLENKPRGF-GEGKVYDTSIEDKLLQEIQQSR-EAQMA--------------NINKLENELLKP 176 (411)
Q Consensus 113 ~~~dE~~~~~~~~M~~wl~nKPrGF-G~gK~YdT~iEeKlLeEM~~sr-~araa--------------Nld~~~~~P~~~ 176 (411)
.++--++|.+|+.+.+-|-. |.|- -++.|-++.-+.++++=|+.++ +..+. +-+...+.+...
T Consensus 399 ~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~ 477 (725)
T KOG0110|consen 399 SEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSK 477 (725)
T ss_pred cHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccc
Confidence 34444678888888776666 7777 4789999999999999999876 22222 111122222111
Q ss_pred ---CCCCCCCCCC-----------------CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCC
Q 015240 177 ---SPKKDEPKKK-----------------EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTK 236 (411)
Q Consensus 177 ---n~~k~~~akk-----------------~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTg 236 (411)
++.....+.. ..+.-..-.+|||.||+.++. ..+|+..|...|.|++|.+..-.+++-
T Consensus 478 ~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt-~e~l~~~F~k~G~VlS~~I~kkkd~~~- 555 (725)
T KOG0110|consen 478 MEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT-LEDLEDLFSKQGTVLSIEISKKKDPAN- 555 (725)
T ss_pred cccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc-hhHHHHHHHhcCeEEEEEEeccccccc-
Confidence 1110000000 001111223499999999964 779999999999999998776666533
Q ss_pred CCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 015240 237 DPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274 (411)
Q Consensus 237 Dp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ 274 (411)
-....|||||-|.+.++|.++++.++|.-+.+-+|+-.
T Consensus 556 k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 556 KYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 14567999999999999999999999999997655533
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=5.9e-06 Score=84.38 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=63.8
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.=.|||||.+.++.. +..++.+|..||-|-+|. -+-+.-|+ +.||||||.++-.|.|.-+.|++||+.+.+
T Consensus 112 iMcRvYVGSIsfEl~-EDtiR~AF~PFGPIKSIn--MSWDp~T~--kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 112 IMCRVYVGSISFELR-EDTIRRAFDPFGPIKSIN--MSWDPATG--KHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HhHheeeeeeEEEec-hHHHHhhccCCCCcceee--cccccccc--cccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 456999999999832 556999999999999997 78888897 999999999999999999999999999876
No 62
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.92 E-value=1.8e-05 Score=76.46 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=93.7
Q ss_pred CCCCccccceecchHHHHHHHHHHh-hHHhhhhhhcccccCCCCC-CCCCCCCCCCCCCCCCCccEEE-EcCCCCCCchH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQ-SREAQMANINKLENELLKP-SPKKDEPKKKEPEDMPSGIRVR-LLNLPKKKNIH 209 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~-sr~araaNld~~~~~P~~~-n~~k~~~akk~~~~~~dgvRVr-VGNLPkk~ni~ 209 (411)
..+||++..|...+-....|++++. .-.+...+.++.+.++..+ |+. ....+-...+++ |+||+.... +
T Consensus 128 ~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~-------~~~~~~~s~~~~~~~~~~f~~~-~ 199 (285)
T KOG4210|consen 128 SSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKL-------SRLSSGPSDTIFFVGELDFSLT-R 199 (285)
T ss_pred ccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchh-------cccccCccccceeecccccccc-h
Confidence 7899999999999999999999986 3467777777666665311 111 112223455566 999999743 6
Q ss_pred HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 210 kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
.||...|..+|.|.+|+ .-.++.|+ .|+|||||.|.....+...+.- ++..+.
T Consensus 200 d~~~~~~~~~~~i~~~r--~~~~~~s~--~~kg~a~~~~~~~~~~~~~~~~-~~~~~~ 252 (285)
T KOG4210|consen 200 DDLKEHFVSSGEITSVR--LPTDEESG--DSKGFAYVDFSAGNSKKLALND-QTRSIG 252 (285)
T ss_pred HHHhhhccCcCcceeec--cCCCCCcc--chhhhhhhhhhhchhHHHHhhc-ccCccc
Confidence 68999999999999999 66677786 9999999999999999998886 555544
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.88 E-value=1.4e-05 Score=78.66 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=89.2
Q ss_pred HHHHhhcCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC
Q 015240 126 MRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKK 205 (411)
Q Consensus 126 M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk 205 (411)
|+.=...|+||||.+.|-+..--...| ..+.-+||...-.|-.+.|+..++.. .+......++||-||..
T Consensus 39 m~d~~t~rsrgFgfv~f~~~~~v~~vl-------~~~~h~~dgr~ve~k~av~r~~~~~~---~~~~~tkkiFvGG~~~~ 108 (311)
T KOG4205|consen 39 MRDPSTGRSRGFGFVTFATPEGVDAVL-------NARTHKLDGRSVEPKRAVSREDQTKV---GRHLRTKKIFVGGLPPD 108 (311)
T ss_pred eccCCCCCcccccceecCCCcchheee-------cccccccCCccccceeccCccccccc---ccccceeEEEecCcCCC
Confidence 433334699999999999665555554 23556667666667777777532221 12226778999999998
Q ss_pred CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 206 KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 206 ~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+. ..+|++.|..+|-|..+- ...+..|. ..||||||+|.+++..+++..+ ..+.|+
T Consensus 109 ~~-e~~~r~yfe~~g~v~~~~--~~~d~~~~--~~rgFgfv~~~~e~sVdkv~~~-~f~~~~ 164 (311)
T KOG4205|consen 109 TT-EEDFKDYFEQFGKVADVV--IMYDKTTS--RPRGFGFVTFDSEDSVDKVTLQ-KFHDFN 164 (311)
T ss_pred Cc-hHHHhhhhhccceeEeeE--Eeeccccc--ccccceeeEeccccccceeccc-ceeeec
Confidence 64 889999999999666664 44566665 7799999999999999988774 344444
No 64
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.87 E-value=4.1e-05 Score=73.39 Aligned_cols=83 Identities=27% Similarity=0.376 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ 274 (411)
++|+|.|||... +..||++||..+|.+.++- +--++ +| ...|=|=|+|+..++|.++|++|||..+. |+.
T Consensus 84 ~~v~v~NL~~~V-~~~Dl~eLF~~~~~~~r~~--vhy~~-~G--~s~Gta~v~~~r~~DA~~avk~~~gv~ld-G~~--- 153 (243)
T KOG0533|consen 84 TKVNVSNLPYGV-IDADLKELFAEFGELKRVA--VHYDR-AG--RSLGTADVSFNRRDDAERAVKKYNGVALD-GRP--- 153 (243)
T ss_pred ceeeeecCCcCc-chHHHHHHHHHhccceEEe--eccCC-CC--CCCccceeeecchHhHHHHHHHhcCcccC-Cce---
Confidence 889999999985 4889999999999877774 44454 54 66799999999999999999999995554 433
Q ss_pred eeeeeecCCCCCC
Q 015240 275 IRCEMVNSSSSNS 287 (411)
Q Consensus 275 ikce~~~~~S~~~ 287 (411)
++++++...+-+.
T Consensus 154 mk~~~i~~~~~~~ 166 (243)
T KOG0533|consen 154 MKIEIISSPSQSK 166 (243)
T ss_pred eeeEEecCccccc
Confidence 8888887766653
No 65
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=1.3e-05 Score=77.69 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
-+||||-|-.+.+ ++=|-++|-.||.|.-|.++..-. +. +.||||||+|.-.|+|.++|.-+|+-++-
T Consensus 11 rtlYVGGladeVt-ekvLhaAFIPFGDI~dIqiPlDye--sq--kHRgFgFVefe~aEDAaaAiDNMnesEL~ 78 (298)
T KOG0111|consen 11 RTLYVGGLADEVT-EKVLHAAFIPFGDIKDIQIPLDYE--SQ--KHRGFGFVEFEEAEDAAAAIDNMNESELF 78 (298)
T ss_pred eeEEeccchHHHH-HHHHHhccccccchhhcccccchh--cc--cccceeEEEeeccchhHHHhhcCchhhhc
Confidence 4899999999865 889999999999999998775432 43 77999999999999999999999998864
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.60 E-value=0.00011 Score=79.98 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=63.4
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
+-|||||.||+... +.||..+|..||+|.+|. .+.+ ||=|||++.++.+|.+++++|+-+.|. .|
T Consensus 421 SrTLwvG~i~k~v~-e~dL~~~feefGeiqSi~--li~~--------R~cAfI~M~~RqdA~kalqkl~n~kv~----~k 485 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVT-EQDLANLFEEFGEIQSII--LIPP--------RGCAFIKMVRRQDAEKALQKLSNVKVA----DK 485 (894)
T ss_pred eeeeeeccccchhh-HHHHHHHHHhcccceeEe--eccC--------CceeEEEEeehhHHHHHHHHHhccccc----ce
Confidence 56899999999743 889999999999999998 7777 788999999999999999999977766 67
Q ss_pred eeeeeeecC
Q 015240 274 QIRCEMVNS 282 (411)
Q Consensus 274 ~ikce~~~~ 282 (411)
.||+--+-+
T Consensus 486 ~Iki~Wa~g 494 (894)
T KOG0132|consen 486 TIKIAWAVG 494 (894)
T ss_pred eeEEeeecc
Confidence 777765543
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.47 E-value=9.6e-05 Score=73.69 Aligned_cols=106 Identities=15% Similarity=0.264 Sum_probs=79.3
Q ss_pred CccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHHHH
Q 015240 136 GFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDLKS 214 (411)
Q Consensus 136 GFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kDL~~ 214 (411)
-||.|--.|...++-+++-+-+=. .+-.||+..++++ +-.+.++.|||+...+. .++|++
T Consensus 37 NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK------------------sk~stkl~vgNis~tct-n~ElRa 97 (346)
T KOG0109|consen 37 NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK------------------SKASTKLHVGNISPTCT-NQELRA 97 (346)
T ss_pred ccceEEeecccccHHHHhhcccceecceEEEEEecccc------------------CCCccccccCCCCcccc-CHHHhh
Confidence 466666666666666665444422 4445555433322 23456789999999986 899999
Q ss_pred HhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ceee
Q 015240 215 AFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GKVQ 272 (411)
Q Consensus 215 aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f--gKVE 272 (411)
.|...|-||.-. +-|++|||+|...++|-.+|..|||..|.+ ++||
T Consensus 98 ~fe~ygpviecd------------ivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 98 KFEKYGPVIECD------------IVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred hhcccCCceeee------------eecceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 999999998875 448999999999999999999999999987 5554
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=0.00034 Score=69.88 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
++=-||+|+-|+-.+. +-.|+..|..+|.|-+|+ .+.++-|| +.||+|||.|+++-+-..+-..-.|+.|.+
T Consensus 99 DPy~TLFv~RLnydT~-EskLrreF~~YG~Ikrir--lV~d~vTg--kskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTS-ESKLRREFEKYGPIKRIR--LVRDKVTG--KSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred Cccceeeeeecccccc-HHHHHHHHHhcCcceeEE--EeeecccC--CccceEEEEeccHHHHHHHHHhccCceecC
Confidence 4567999999999865 779999999999999999 77888897 999999999999999999999999999886
No 69
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.36 E-value=0.00036 Score=71.41 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=54.6
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
+.+.++-+|||+|||.+.+ ...|+++|+.+|.|....+.+..- ..+...||||+|.+...+.++|+.-
T Consensus 283 ~~~~~~~~i~V~nlP~da~-~~~l~~~Fk~FG~Ik~~~I~vr~~----~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDAT-PAELEEVFKQFGPIKEGGIQVRSP----GGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ceeecccceEeecCCCCCC-HHHHHHHHhhcccccccceEEecc----CCCcCceEEEEEeecchhhhhhhcC
Confidence 4455777899999999865 667999999999998887766551 1122389999999999999999964
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.34 E-value=0.0012 Score=64.44 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..--||+|.-||-+.. -|+|-.||.++.|--.--++-+.. +|..|+=||||||.+...|.+++..+||..|- .-+
T Consensus 32 ~~VRTLFVSGLP~DvK-pREiynLFR~f~GYEgslLK~Tsk---~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD-pE~ 106 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVK-PREIYNLFRRFHGYEGSLLKYTSK---GDQVCKPVAFATFTSHQFALAAMNALNGVRFD-PET 106 (284)
T ss_pred cccceeeeccCCcccC-HHHHHHHhccCCCccceeeeeccC---CCccccceEEEEecchHHHHHHHHHhcCeeec-ccc
Confidence 3456899999999844 889999999998754443332221 34689999999999999999999999998854 333
Q ss_pred eceeeeeeecCCCCCC
Q 015240 272 QKQIRCEMVNSSSSNS 287 (411)
Q Consensus 272 EK~ikce~~~~~S~~~ 287 (411)
-.-+++|.+.++++.-
T Consensus 107 ~stLhiElAKSNtK~k 122 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRK 122 (284)
T ss_pred CceeEeeehhcCcccc
Confidence 4557788887776543
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.32 E-value=0.00018 Score=68.19 Aligned_cols=71 Identities=27% Similarity=0.361 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeece
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQ 274 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ 274 (411)
.+||||+||-..- ++||+.+|++.|.+-.+. +--|||||.|.+.-+|+-+|--+||..|...+
T Consensus 2 ~rv~vg~~~~~~~-~~d~E~~f~~yg~~~d~~------------mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~---- 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRAR-ERDVERFFKGYGKIPDAD------------MKNGFGFVEFEDPRDADDAVHDLDGKELCGER---- 64 (216)
T ss_pred CceeecccCCccc-hhHHHHHHhhccccccce------------eecccceeccCchhhhhcccchhcCceeccee----
Confidence 5899999999843 889999999999988774 23599999999999999999999999988765
Q ss_pred eeeeeecC
Q 015240 275 IRCEMVNS 282 (411)
Q Consensus 275 ikce~~~~ 282 (411)
+-.|.+..
T Consensus 65 ~vve~~r~ 72 (216)
T KOG0106|consen 65 LVVEHARG 72 (216)
T ss_pred eeeecccc
Confidence 55555553
No 72
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.24 E-value=0.00015 Score=70.23 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=64.6
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.--+|||+||..+.. +.-|.++|-..|-|+++.++...+ ...| ||||.|+++-...-+|+.+||-.+-.--++
T Consensus 8 ~drtl~v~n~~~~v~-eelL~ElfiqaGPV~kv~ip~~~d-----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVS-EELLSELFIQAGPVYKVGIPSGQD-----QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred hhhHHHHHhhhhhhh-HHHHHHHhhccCceEEEeCCCCcc-----CCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 456899999999843 567999999999999998776666 3557 999999999999999999999987755555
Q ss_pred ceeeee
Q 015240 273 KQIRCE 278 (411)
Q Consensus 273 K~ikce 278 (411)
..++|-
T Consensus 81 ~~~r~G 86 (267)
T KOG4454|consen 81 RTLRCG 86 (267)
T ss_pred cccccC
Confidence 556663
No 73
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.97 E-value=0.0041 Score=52.50 Aligned_cols=70 Identities=24% Similarity=0.245 Sum_probs=51.9
Q ss_pred cEEEEcCCCCCCchHHHHHHHhcc-C-CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKG-V-PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~-v-GgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.||=|.|+|.+.+ .++|.+++.. + |.--=++++.+ -+|+ ...|+|||+|.+.+.|.+|.+.++|+.....
T Consensus 2 TTvMirNIPn~~t-~~~L~~~l~~~~~g~yDF~YLPiD--f~~~--~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYT-QEMLIQILDEHFKGKYDFFYLPID--FKNK--CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCC-HHHHHHHHHHhccCcceEEEeeee--ccCC--CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 4788999999865 6677777632 2 33333444443 3354 6699999999999999999999999998653
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.84 E-value=0.0026 Score=52.72 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=92.6
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc--cCCCCCCC---CC---CCCCCCCCCCCCCccEEEEcC
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE--NELLKPSP---KK---DEPKKKEPEDMPSGIRVRLLN 201 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~--~~P~~~n~---~k---~~~akk~~~~~~dgvRVrVGN 201 (411)
..++||||++.|.+...+..++++|.+.. .++.+-++... ..+....+ .. .............+..++++|
T Consensus 153 ~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (306)
T COG0724 153 TGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGN 232 (306)
T ss_pred cCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccc
Confidence 34999999999999999999999999766 88888888754 22222221 00 011112455667899999999
Q ss_pred CCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 202 LPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 202 LPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
++.... ..++..+|...|.+.++....... + ..|.++.++.+.....+...+...+....
T Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 233 LPLKTA-EEELADLFKSRGDIVRASLPPSKD---G-KIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred cccccc-hhHHHHhccccccceeeeccCCCC---C-cccccccccchhHHHhhhhhhccccceee
Confidence 999854 889999999999997765333322 2 46788888777777777777766554443
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0021 Score=66.27 Aligned_cols=135 Identities=12% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCC-CCC---CCCCccEEEEcCCCCCCc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKK-EPE---DMPSGIRVRLLNLPKKKN 207 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk-~~~---~~~dgvRVrVGNLPkk~n 207 (411)
|.+||-.+...-...+--+||-|.+.- -||-+-++ +|- +-|++ +. -+. ..-.=.||||...-.+..
T Consensus 153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg----rPs-NmpQA----QpiID~vqeeAk~fnRiYVaSvHpDLS 223 (544)
T KOG0124|consen 153 KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG----RPS-NMPQA----QPIIDMVQEEAKKFNRIYVASVHPDLS 223 (544)
T ss_pred cccceEEEEEeCcHHHHHHHHHhccccccCcccccc----CCC-CCccc----chHHHHHHHHHHhhheEEeeecCCCcc
Confidence 899999999999999999999998744 33333332 222 12221 11 011 111236999999988743
Q ss_pred hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--ceeeceeeeeeec
Q 015240 208 IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--GKVQKQIRCEMVN 281 (411)
Q Consensus 208 i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f--gKVEK~ikce~~~ 281 (411)
+.|++.+|..||.|+.-.+|.... +| ..|||||+.|++...-..+|..+|=+.+.+ +||-|.+.--.+.
T Consensus 224 -e~DiKSVFEAFG~I~~C~LAr~pt--~~--~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 224 -ETDIKSVFEAFGEIVKCQLARAPT--GR--GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred -HHHHHHHHHhhcceeeEEeeccCC--CC--CccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchh
Confidence 779999999999999999775433 33 679999999999999999999999888777 7777766544443
No 76
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.71 E-value=0.0021 Score=63.37 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=64.4
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.+-.|||-|.|--+.| +.=|.-+|+.|+.-..-+ ++.++-|| +.|||+||.|.+..++.+++..+||..|+-
T Consensus 188 ~~DfRIfcgdlgNevn-d~vl~raf~Kfpsf~~ak--viRdkRTg--KSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVN-DDVLARAFKKFPSFQKAK--VIRDKRTG--KSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred cccceeeccccccccc-HHHHHHHHHhccchhhcc--cccccccc--ccccceeeeecCHHHHHHHHHhhccccccc
Confidence 3678999999998876 556999999999987776 88898897 999999999999999999999999999873
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.69 E-value=0.0035 Score=65.79 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=54.1
Q ss_pred EEEcCCCCCCchHHHHHHHhcc-CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 197 VRLLNLPKKKNIHRDLKSAFKG-VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 197 VrVGNLPkk~ni~kDL~~aFk~-vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
|||+|+|.+.. -+||+.||++ +|+|.-+. ..-+. . ++.||=|.|.|+++|.+.+++|++|-+++++
T Consensus 47 vfItNIpyd~r-WqdLKdLvrekvGev~yve--Ll~D~-~--GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 47 VFITNIPYDYR-WQDLKDLVREKVGEVEYVE--LLFDE-S--GKARGCAVVEFKDPENVQKALEKLNKYEVNG 113 (608)
T ss_pred EEEecCcchhh-hHhHHHHHHHhcCceEeee--eeccc-C--CCcCCceEEEeeCHHHHHHHHHHhhhccccC
Confidence 99999999843 7899999954 66666665 33333 3 3789999999999999999999999999886
No 78
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.64 E-value=0.0035 Score=67.46 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=60.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+.-|--|||.-|+-.+. ..||+.||..+|-||-.+ |+.| |+-|-.|-+||||+.+-++|.++|+-|.-..+-
T Consensus 402 s~~gRNlWVSGLSstTR-AtDLKnlFSKyGKVvGAK--VVTN--aRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH 473 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTR-ATDLKNLFSKYGKVVGAK--VVTN--ARSPGARCYGFVTMSTSAEATKCIEHLHRTELH 473 (940)
T ss_pred cccccceeeeccccchh-hhHHHHHHHHhcceecee--eeec--CCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence 34567799999998642 559999999999999998 8888 666899999999999999999999987655543
No 79
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0082 Score=61.82 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=68.0
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.+.|+..-|+|--|-.-+. +.||+-+|..||-|++-. ++.++||||-.| +|||-|++.+...++.=|+...-|-.
T Consensus 234 d~~PPeNVLFVCKLNPVTt-DeDLeiIFSrFG~i~sce--VIRD~ktgdsLq--yaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTT-DEDLEIIFSRFGKIVSCE--VIRDRKTGDSLQ--YAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred ccCCCcceEEEEecCCccc-ccchhhHHhhcccceeee--EEecccccchhh--eeeeeecchhhHHHHHhhhcceeecc
Confidence 6667888899999988653 889999999999999998 999999998777 79999999999999998888888776
Q ss_pred cee
Q 015240 269 GKV 271 (411)
Q Consensus 269 gKV 271 (411)
-||
T Consensus 309 rRI 311 (479)
T KOG0415|consen 309 RRI 311 (479)
T ss_pred ceE
Confidence 544
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.09 E-value=0.031 Score=57.16 Aligned_cols=188 Identities=13% Similarity=0.112 Sum_probs=107.0
Q ss_pred ccccccccchHHHHHHhhcCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCCCCCCCCC--CCCCC-CCCC
Q 015240 114 DEDEGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKD--EPKKK-EPED 190 (411)
Q Consensus 114 ~~dE~~~~~~~~M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~--~~akk-~~~~ 190 (411)
|++.-...|...| .|+.+.-.-||.- -||+...+-+.|-.-.++...-.+.+ +|+..-+... ...++ +..-
T Consensus 54 d~~k~~W~pki~~-df~a~yq~nyg~~--~d~s~~~~e~~e~~~a~~~~e~e~~k---~~~r~~~~~~~~kk~~~e~~~~ 127 (382)
T KOG1548|consen 54 DDEKKAWVPKIPE-DFIAEYQANYGFE--DDTSADATELEEDGHAKKKKEDELLK---NPKRKYKVGKGEKKQKEEGEWF 127 (382)
T ss_pred ehhhccccCCCch-hHHHhhhcccCcc--ccccccchhhhhhhhhhhcccchhhh---cccccccCccccccccCCCccc
Confidence 4445556665444 5667766777776 56666655555544444333333332 4443222211 11111 2122
Q ss_pred C--C-CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEe----eccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 015240 191 M--P-SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINII----PVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 191 ~--~-dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIk----pav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG 263 (411)
. + -...|||.|||-+.+ ..+..++|..+|.|++-- |. ++--.+.++.-||=|..+|-.++..+-+|+.|+|
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT-~dE~~~~~sKcGiI~~d~~t~epk-~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDIT-VDEFAEVMSKCGIIMRDPQTGEPK-VKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred CcccccCceEEecCCCCccc-HHHHHHHHHhcceEeccCCCCCee-EEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 2 2 334599999999854 778999999999987641 11 1111122245679999999999999999999999
Q ss_pred ceeccceeeceeeeeeecCCCCCCCCCCCCCC-----CCCCCcccccccccCCCC
Q 015240 264 QIIAFGKVQKQIRCEMVNSSSSNSVDGHSSDD-----TSGYPKIKVYGFEEDPGA 313 (411)
Q Consensus 264 q~~~fgKVEK~ikce~~~~~S~~~~~~~s~~s-----~~~~p~~~v~~fee~~~~ 313 (411)
-.|.+ +.+++|.|+.+-...-....... ---.++.+.-+|+..|..
T Consensus 206 ~~~rg----~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~ 256 (382)
T KOG1548|consen 206 DELRG----KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR 256 (382)
T ss_pred ccccC----cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc
Confidence 99885 35566666665544332221111 111223445567777764
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.83 E-value=0.023 Score=54.02 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...+.-.|||||+-..+.+.+ ++.-|+.+|++.+|.+....+. | ..||||||-|.+.+.+...+. +||-.|-.-
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~-~e~hf~~Cg~i~~~ti~~d~~~--~--~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTK-IELHFESCGGINRVTVPKDKFR--G--HPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred hccCCceEEEeccccccccch-hhheeeccCCccceeeeccccC--C--CcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 334667899999999876555 9999999999998886666664 3 369999999999999999999 999998875
Q ss_pred eeeceeeeeeecCCC
Q 015240 270 KVQKQIRCEMVNSSS 284 (411)
Q Consensus 270 KVEK~ikce~~~~~S 284 (411)
.|++..+---+-..+
T Consensus 171 ~i~vt~~r~~~pg~~ 185 (231)
T KOG4209|consen 171 AIEVTLKRTNVPGMG 185 (231)
T ss_pred cceeeeeeeecCCcC
Confidence 555555544443333
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=95.82 E-value=0.014 Score=63.94 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeec--cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPV--VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpa--v~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
|-..-||||||+.+.+ ++.|-.-|..||-|++|++- .+---+-++-.| |||.|-++.+|.||...++|+.|+.
T Consensus 172 P~TTNlyv~Nlnpsv~-E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~c---gfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVD-ENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNC---GFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CcccceeeecCCcccc-HHHHHHHhcccCcccceeeecccchhhhcccccc---ceeeehhhhhHHHHHHHhcceeeee
Confidence 3456799999999964 89999999999999999865 222222333456 7899999999999999999999884
No 83
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.59 E-value=0.016 Score=58.87 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEe------eccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINII------PVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIk------pav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq 264 (411)
...-.+|||++||-.+. ..+|.+.|..+|-|-+=+ ++.-++++|+ +.||=|-|++.+-..|+++|+-|+|+
T Consensus 63 ~s~~~ti~v~g~~d~~~-~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~--~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVC-ENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETG--APKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccch-HHHHHHHHhhcceeccCCCCCCcchhcccccccc--CcCCceeeeecChhhhhhhhhhhccc
Confidence 45678999999999865 789999999998764422 2255888997 99999999999999999999999999
Q ss_pred eecc
Q 015240 265 IIAF 268 (411)
Q Consensus 265 ~~~f 268 (411)
.|..
T Consensus 140 df~g 143 (351)
T KOG1995|consen 140 DFCG 143 (351)
T ss_pred cccC
Confidence 9886
No 84
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.56 E-value=0.045 Score=46.65 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=44.6
Q ss_pred EEEEcCCCCCCch---HHHHHHHhccCCC-eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 196 RVRLLNLPKKKNI---HRDLKSAFKGVPG-IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 196 RVrVGNLPkk~ni---~kDL~~aFk~vGg-visIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
.|+|.|||-.+.. ..=|+.|+-..|| |++| + .|=|+|-|.+.+.|.|+-..++|..+-+-||
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------e-----CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 5899999997665 4479999999988 3333 2 4679999999999999999999999877666
Q ss_pred ece
Q 015240 272 QKQ 274 (411)
Q Consensus 272 EK~ 274 (411)
--+
T Consensus 70 ~v~ 72 (90)
T PF11608_consen 70 SVS 72 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 85
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.45 E-value=0.028 Score=57.41 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=50.3
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
--+||||+|=-. +.++||+.-|-.+|++-+|. +... +|=|||+|.+++.|..+.++.-...+
T Consensus 228 I~tLyIg~l~d~-v~e~dIrdhFyqyGeirsi~--~~~~--------~~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 228 IKTLYIGGLNDE-VLEQDIRDHFYQYGEIRSIR--ILPR--------KGCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred eeEEEecccccc-hhHHHHHHHHhhcCCeeeEE--eecc--------cccceeeehhhHHHHHHHHhhcceee
Confidence 358999999544 35999999999999999996 3333 67899999999999999998544443
No 86
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=94.89 E-value=0.052 Score=54.60 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=58.0
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+--.|+||-|.+.-. +.|++.+|..+|.+.... +..- -|+..||-|||.|.+--+|..+|..+.|-.-+-
T Consensus 18 ~drklfvgml~kqq~-e~dvrrlf~pfG~~~e~t--vlrg---~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp 87 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQS-EDDVRRLFQPFGNIEECT--VLRG---PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMP 87 (371)
T ss_pred cchhhhhhhhccccc-HHHHHHHhcccCCcceeE--EecC---CCCCCCCceEEEeccchHHHHHHHHhcccccCC
Confidence 445799999999743 889999999999998886 4333 256889999999999999999999999876443
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.63 E-value=0.059 Score=56.93 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..-..++.|.|||.+++ -|-|+.-|.++|.|....+ -.+ ++.|| .|.|.+.++|.+++..+||-.+.+
T Consensus 533 arKa~qIiirNlP~dfT-WqmlrDKfre~G~v~yadi--me~-----GkskG--VVrF~s~edAEra~a~Mngs~l~G 600 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFT-WQMLRDKFREIGHVLYADI--MEN-----GKSKG--VVRFFSPEDAERACALMNGSRLDG 600 (608)
T ss_pred cccccEEEEecCCcccc-HHHHHHHHHhccceehhhh--hcc-----CCccc--eEEecCHHHHHHHHHHhccCcccC
Confidence 34456899999999875 8899999999999887753 223 25577 999999999999999999988765
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=94.50 E-value=0.036 Score=55.09 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=55.1
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS 262 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N 262 (411)
+.-.|+||.|+-+++ ...|+.-|..+|+|+-.. +-.++-|+ -.|||+||+|++.+--++++-.-.
T Consensus 5 ~~~KlfiGgisw~tt-ee~Lr~yf~~~Gev~d~~--vm~d~~t~--rsrgFgfv~f~~~~~v~~vl~~~~ 69 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETT-EESLREYFSQFGEVTDCV--VMRDPSTG--RSRGFGFVTFATPEGVDAVLNART 69 (311)
T ss_pred CCcceeecCcCcccc-HHHHHHHhcccCceeeEE--EeccCCCC--CcccccceecCCCcchheeecccc
Confidence 667899999999975 888999999999999987 55666674 789999999999988888876533
No 89
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.46 E-value=0.023 Score=56.12 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=55.8
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC--CCCCCcccce--------EEEeecCHHHHHHHHHHhCCce
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK--KTKDPICKGF--------AFVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nr--KTgDp~CKGF--------AFVtf~seedA~rfIEk~NGq~ 265 (411)
-||++|.|..++ .-=|+++|..+|.|-||+++...+- +-+ +.+|+ |.|-|.+--.|.++.+.|||..
T Consensus 76 VvylS~IPp~m~-~~rlReil~~yGeVGRvylqpE~~s~~~~r--~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 76 VVYLSNIPPYMD-PVRLREILSQYGEVGRVYLQPEDDSKRAAR--KRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred EEEeccCCCccC-HHHHHHHHHhccccceEEecchhhHHHHHH--hhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 499999999976 6779999999999999998843321 000 11222 5789999999999999999999
Q ss_pred eccc
Q 015240 266 IAFG 269 (411)
Q Consensus 266 ~~fg 269 (411)
|.+.
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9865
No 90
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.43 E-value=0.1 Score=43.94 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=37.8
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq 264 (411)
|.-|+|.+++..+. +.+|+++|+.+|.|.-|- -.. | ---|||-|++.+.|.++++++.-.
T Consensus 1 G~il~~~g~~~~~~-re~iK~~f~~~g~V~yVD--~~~----G----~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTS-REDIKEAFSQFGEVAYVD--FSR----G----DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS---HHHHHHHT-SS--EEEEE----T----T-----SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcC-HHHHHHHHHhcCCcceEE--ecC----C----CCEEEEEECCcchHHHHHHHHHhc
Confidence 56799999999876 889999999999877664 111 1 336899999999999999997665
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=94.38 E-value=0.044 Score=53.87 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=55.5
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.-.+|+|.||..+++ +.+|+.+|+.++|-.+.+ +.+| .| +| -|||.|+..+.|+.++--+.|..|.-
T Consensus 209 acstlfianl~~~~~-ed~l~~~~~~~~gf~~l~---~~~~-~g--~~--vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCT-EDELKQLLSRYPGFHILK---IRAR-GG--MP--VAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred hhhhHhhhccCCCCC-HHHHHHHHHhCCCceEEE---EecC-CC--cc--eEeecHHHHHHHHHHHHHhhcceecc
Confidence 446899999999987 889999999999977765 3332 33 66 58899999999999999999988764
No 92
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.044 Score=59.05 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=51.9
Q ss_pred EEEcCCCCCCc-----hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 197 VRLLNLPKKKN-----IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 197 VrVGNLPkk~n-----i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
|.|-|.|.--- +..-|..+|..+|.+++++.+.... + .|+||.|+.+++..+|..+|..+||+.+-
T Consensus 61 Vvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~--g---gtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 61 VVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE--G---GTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred EEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc--C---CeeeEEEEEecChhhHHHHHHhcccceec
Confidence 55556665211 2346788999999999998775544 3 48999999999999999999999999864
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.24 E-value=0.13 Score=49.64 Aligned_cols=69 Identities=26% Similarity=0.364 Sum_probs=56.4
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
...++.+.+.+.|||.+.+ ..-|..+|..++|.-.|+ -+..+ +|.|||.|.++-.|..+-+.+.|..|+
T Consensus 141 ~~~ppn~ilf~~niP~es~-~e~l~~lf~qf~g~keir--~i~~~-------~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESE-SEMLSDLFEQFPGFKEIR--LIPPR-------SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred cCCCCceEEEEecCCcchh-HHHHHHHHhhCcccceeE--eccCC-------CceeEEecchhhhhHHHhhhhccceec
Confidence 4467889999999999976 556777777777766665 33343 899999999999999999999999887
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.75 E-value=0.079 Score=55.94 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=66.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.+......++|+|||--.+ .-.+.++...||.+-.+. .++|.-|| -.|||||..|-+-..++++|+.+||..+..
T Consensus 284 ~~~~~~~ki~v~~lp~~l~-~~q~~Ell~~fg~lk~f~--lv~d~~~g--~skg~af~ey~dpsvtd~A~agLnGm~lgd 358 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLT-EDQVKELLDSFGPLKAFR--LVKDSATG--NSKGFAFCEYCDPSVTDQAIAGLNGMQLGD 358 (500)
T ss_pred CcccccchhhhccCcCccC-HHHHHHHHHhcccchhhe--eecccccc--cccceeeeeeeCCcchhhhhcccchhhhcC
Confidence 3445678899999999643 667889999999988887 66776675 889999999999999999999999999876
Q ss_pred ceeece
Q 015240 269 GKVQKQ 274 (411)
Q Consensus 269 gKVEK~ 274 (411)
-++=.+
T Consensus 359 ~~lvvq 364 (500)
T KOG0120|consen 359 KKLVVQ 364 (500)
T ss_pred ceeEee
Confidence 443333
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.60 E-value=0.048 Score=52.10 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=54.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.-...++.|.||+-..+ .+||..-|...|.+... +.. ++||||-|.+.++|.++|++++|..+..
T Consensus 96 ~~s~~r~~~~~~~~r~~-~qdl~d~~~~~g~~~~~----~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVS-WQDLKDHFRPAGEVTYV----DAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNG 160 (216)
T ss_pred ccccceeeeccchhhhh-HHHHhhhhcccCCCchh----hhh--------ccccceeehhhhhhhhcchhccchhhcC
Confidence 34567899999999743 78999999999998332 222 8999999999999999999999999886
No 96
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.30 E-value=0.17 Score=46.09 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhcc-CCCee--EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKG-VPGII--NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~-vGgvi--sIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+..|-|.+||...+ +.++.+.++. +|+.+ ..+.-.......+ +..-.=|||+|.+.+++..|+..|+|+.|..
T Consensus 5 ~~~~KvVIR~LPP~Lt-eeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~-~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLT-EEEFWEQISPWLPDEWDWYYFQGKYGKKSFK-PPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS--HHHHCCCCSS--SSE---EEEEEEES-SSST-TS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCC-HHHHHHHhhhhcccccceEEEecCCCCccCC-CCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3567999999999754 7788888877 77772 2222223343344 3335679999999999999999999999877
Q ss_pred ce-eeceeeeeeecC
Q 015240 269 GK-VQKQIRCEMVNS 282 (411)
Q Consensus 269 gK-VEK~ikce~~~~ 282 (411)
-| .+-...+|.|-.
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 22 233444555443
No 97
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.23 E-value=0.078 Score=56.55 Aligned_cols=66 Identities=27% Similarity=0.347 Sum_probs=55.9
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..-+|.|.|||.... ..+|..+|..+|+|--|+ .| +.-+|=-||.|=+.-+|.+++..+|++.|.+
T Consensus 74 ~~~~L~v~nl~~~Vs-n~~L~~~f~~yGeir~ir-------~t--~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVS-NDTLLRIFGAYGEIREIR-------ET--PNKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred ccceEEEEecCCcCC-HHHHHHHHHhhcchhhhh-------cc--cccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 445899999999743 779999999999965543 44 3568999999999999999999999999884
No 98
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.97 E-value=0.18 Score=56.24 Aligned_cols=99 Identities=19% Similarity=0.120 Sum_probs=78.4
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
+.+.||.+|+.|....-+.++++ |.-+-.. . -+-|.|.|+|+..+ ..
T Consensus 705 ~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~-----------------------g--------K~~v~i~g~pf~gt-~e 751 (881)
T KOG0128|consen 705 EKRFRGKAYVEFLKPEHAGAAVA-FRDSCFF-----------------------G--------KISVAISGPPFQGT-KE 751 (881)
T ss_pred ccccccceeeEeecCCchhhhhh-hhhhhhh-----------------------h--------hhhhheeCCCCCCc-hH
Confidence 45999999999999888877762 2222211 0 24578999999875 77
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+|+.++.+.|.+.+.+ .+.+| +++.||-|||.|+++.+|-+.+-...+..++
T Consensus 752 ~~k~l~~~~gn~~~~~--~vt~r---~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 752 ELKSLASKTGNVTSLR--LVTVR---AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred HHHhhccccCCccccc--hhhhh---ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 8999999999999998 55553 3488999999999999999999988888776
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.73 E-value=0.3 Score=50.72 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=53.1
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
-+.||||||=--++ +.||-.++...| .+.-|+ --.||-.| ..||||.|.+.++...++.+|.|--++|-+
T Consensus 80 k~~~YvGNL~W~TT-D~DL~~A~~S~G~~~~~dmK--FFENR~NG--QSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTT-DADLLKALQSTGLAQFADMK--FFENRTNG--QSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred eEEEEecceeEEec-cHHHHHHHHhhhHHHHhhhh--hhhcccCC--cccceEEEEecchHHHHHHHHhcccceecC
Confidence 36799999988754 888888875544 333333 34677554 999999999999999999999987666553
No 100
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.48 E-value=0.7 Score=36.20 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=37.8
Q ss_pred CCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 015240 201 NLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM 279 (411)
Q Consensus 201 NLPkk~ni-~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~ 279 (411)
|+=++-.+ .++|-.++.+.+++-+-.+-.+.-. .-|+||.+... .|.++++.++|..+.+ +.+++|.
T Consensus 6 n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-------~~~S~vev~~~-~a~~v~~~l~~~~~~g----k~v~ve~ 73 (74)
T PF03880_consen 6 NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-------DNFSFVEVPEE-VAEKVLEALNGKKIKG----KKVRVER 73 (74)
T ss_dssp S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE--------SS-EEEEE-TT--HHHHHHHHTT--SSS--------EEE
T ss_pred EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-------eeEEEEEECHH-HHHHHHHHhcCCCCCC----eeEEEEE
Confidence 34444345 6699999988887655432222222 55999999876 8999999999999884 4445544
No 101
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=89.19 E-value=0.15 Score=44.65 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=38.3
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP 176 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~ 176 (411)
.++||||++.|.+.+.++++|++|.+.. .++.+-++....+|..+
T Consensus 73 g~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~~ 118 (144)
T PLN03134 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAP 118 (144)
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCCC
Confidence 3799999999999999999999998877 78888888877666543
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=89.00 E-value=0.12 Score=39.18 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=27.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhh
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQM 163 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~ara 163 (411)
+++||||++.+.+.+-+.+++++|.+.. .+|.
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 5789999999999999999999998866 4443
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=87.88 E-value=1.5 Score=32.97 Aligned_cols=51 Identities=14% Similarity=0.335 Sum_probs=37.8
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHH
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFV 258 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfI 258 (411)
.|-|.--|.+ ....+..-|+.+|+|+.+..... +=++||.|+++.+|.+++
T Consensus 3 wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~~----------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPD--LAEEVLEHFASFGEIVDIYVPES----------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECch--HHHHHHHHHHhcCCEEEEEcCCC----------CcEEEEEECCHHHHHhhC
Confidence 3455556665 25567778999999999984411 348999999999999874
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=87.74 E-value=4 Score=43.74 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=70.6
Q ss_pred CCCCccccceecchHHHHHHH---HHHhhHHhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQ---EIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIH 209 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLe---EM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~ 209 (411)
||.|=-++-+..+.--+++|+ |+.+. |-|.+=.+.+.+++.-.+ .-++.-+..-..||+.-||..|+ +
T Consensus 47 r~sGeA~Ve~~seedv~~AlkkdR~~mg~---RYIEVf~~~~~e~d~~~~-----~~g~~s~~~d~vVRLRGLPfsct-e 117 (510)
T KOG4211|consen 47 RPSGEAYVEFTSEEDVEKALKKDRESMGH---RYIEVFTAGGAEADWVMR-----PGGPNSSANDGVVRLRGLPFSCT-E 117 (510)
T ss_pred CcCcceEEEeechHHHHHHHHhhHHHhCC---ceEEEEccCCcccccccc-----CCCCCCCCCCceEEecCCCccCc-H
Confidence 788888888888877777773 22222 333333333333322211 11222223344689999999997 9
Q ss_pred HHHHHHhccCCCeeE-EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 210 RDLKSAFKGVPGIIN-IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 210 kDL~~aFk~vGgvis-Ikpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
+|+.+.|++..=|.. |....... - ..-|=|||.|++.+.|..++.+
T Consensus 118 ~dI~~FFaGL~Iv~~gi~l~~d~r--g---R~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 118 EDIVEFFAGLEIVPDGILLPMDQR--G---RPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred HHHHHHhcCCcccccceeeeccCC--C---CcccceEEEecCHHHHHHHHHH
Confidence 999999988654433 32222221 1 2347899999999999999875
No 105
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=85.82 E-value=0.89 Score=48.31 Aligned_cols=64 Identities=27% Similarity=0.384 Sum_probs=47.2
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.+|||||..... -.||+.+|+.. ++...+.- -+--|+|||+..+..-|.++||.+||+-=.-||
T Consensus 3 klyignL~p~~~-psdl~svfg~a------k~~~~g~f----l~k~gyafvd~pdq~wa~kaie~~sgk~elqGk 66 (584)
T KOG2193|consen 3 KLYIGNLSPQVT-PSDLESVFGDA------KIPGSGQF----LVKSGYAFVDCPDQQWANKAIETLSGKVELQGK 66 (584)
T ss_pred cccccccCCCCC-hHHHHHHhccc------cCCCCcce----eeecceeeccCCchhhhhhhHHhhchhhhhcCc
Confidence 589999998743 77999999665 11111110 022589999999999999999999998755554
No 106
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=84.30 E-value=0.31 Score=40.84 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHhhcCCCCcc
Q 015240 116 DEGMMISFGKMRRWLENKPRGFG 138 (411)
Q Consensus 116 dE~~~~~~~~M~~wl~nKPrGFG 138 (411)
||++.+|=--..+ .++|-|-||
T Consensus 48 eeee~m~rK~k~r-~rkKrrwlw 69 (81)
T PF14812_consen 48 EEEEPMPRKGKKR-PRKKRRWLW 69 (81)
T ss_dssp -----------------------
T ss_pred hhccccccccccC-ccccchhHH
Confidence 4444444322223 444555554
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.50 E-value=2.3 Score=44.33 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=51.7
Q ss_pred cEEEEcCCCCCCchHHH----H--HHHhccCCCeeEEeeccccCCCC-CCCcccceE--EEeecCHHHHHHHHHHhCCce
Q 015240 195 IRVRLLNLPKKKNIHRD----L--KSAFKGVPGIINIIPVVSGNKKT-KDPICKGFA--FVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kD----L--~~aFk~vGgvisIkpav~~nrKT-gDp~CKGFA--FVtf~seedA~rfIEk~NGq~ 265 (411)
.-|||--||.+.- ..+ | .+.|..+|.|+.|.. |||| --+---|-+ |+||.+.|+|+|+|....|-
T Consensus 115 NLvYVigi~pkva-~Ee~~~vLk~~eyFGQyGkI~KIvv----Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs- 188 (480)
T COG5175 115 NLVYVIGIPPKVA-DEEVAPVLKRHEYFGQYGKIKKIVV----NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS- 188 (480)
T ss_pred ceeEEecCCCCCC-cccccccccchhhhhhccceeEEEe----cccccccccccccceEEEEecchHHHHHHHHHhccc-
Confidence 4578888888742 332 2 468999999999852 3444 112224445 99999999999999999985
Q ss_pred eccceeece
Q 015240 266 IAFGKVQKQ 274 (411)
Q Consensus 266 ~~fgKVEK~ 274 (411)
++.||+=|.
T Consensus 189 ~~DGr~lka 197 (480)
T COG5175 189 LLDGRVLKA 197 (480)
T ss_pred cccCceEee
Confidence 466776554
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=83.45 E-value=3 Score=44.66 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=52.1
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
.+.+.+.-|++.-||-+++ ++||...|..++ |.++. ..|.|| ...|=|||.|.+++++..++++
T Consensus 5 ~e~~~~~~vr~rGLPwsat-~~ei~~Ff~~~~-I~~~~----~~r~~G--r~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 5 NEGSTAFEVRLRGLPWSAT-EKEILDFFSNCG-IENLE----IPRRNG--RPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred cCCCcceEEEecCCCcccc-HHHHHHHHhcCc-eeEEE----EeccCC--CcCcceEEEeechHHHHHHHHh
Confidence 3566788899999999986 999999998875 45543 344454 6789999999999999999986
No 109
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=82.40 E-value=0.63 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=9.4
Q ss_pred CCCCccccccccchHHHHHHhhcCCCCccccceecch
Q 015240 110 DADNDEDEGMMISFGKMRRWLENKPRGFGEGKVYDTS 146 (411)
Q Consensus 110 ~~~~~~dE~~~~~~~~M~~wl~nKPrGFG~gK~YdT~ 146 (411)
++|++++|++=+|+...-+-| .+|+-++-|=|+
T Consensus 30 dDddddee~de~p~p~fgea~----~~~~~v~rYltS 62 (101)
T PF09026_consen 30 DDDDDDEEEDEVPVPEFGEAM----AYFTMVKRYLTS 62 (101)
T ss_dssp ----------------HHHHH----HHHHHHHHHHCT
T ss_pred cccccccccccccchhHHHHH----hhcchHhhhhhc
Confidence 344444444556655554433 356667777554
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=0.57 Score=46.38 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=51.0
Q ss_pred ccccchHHHHHH-----hhc-CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCC
Q 015240 118 GMMISFGKMRRW-----LEN-KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPK 179 (411)
Q Consensus 118 ~~~~~~~~M~~w-----l~n-KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~ 179 (411)
-.||||+|++.- +++ |-||||.+-|.-..-+-.++.-|..++ -||.+-+|++++--++-.++
T Consensus 29 aAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikegsq 97 (298)
T KOG0111|consen 29 AAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEGSQ 97 (298)
T ss_pred hccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCCCC
Confidence 468999998753 333 999999999999999999999999999 89999999887755544443
No 111
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=79.07 E-value=3.4 Score=44.59 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=46.3
Q ss_pred hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 208 IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 208 i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
|..|+.+--...|+|+.|+ +++|- -||-||.|.+.+.|..++-.++|.-|. ||+-
T Consensus 466 I~edV~Eec~k~g~v~hi~--vd~ns-------~g~VYvrc~s~~~A~~a~~alhgrWF~-gr~I 520 (549)
T KOG0147|consen 466 IREDVIEECGKHGKVCHIF--VDKNS-------AGCVYVRCPSAEAAGTAVKALHGRWFA-GRMI 520 (549)
T ss_pred HHHHHHHHHHhcCCeeEEE--EccCC-------CceEEEecCcHHHHHHHHHHHhhhhhc-ccee
Confidence 6677767779999999998 88882 399999999999999999999999965 4443
No 112
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=79.01 E-value=15 Score=31.75 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=52.4
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.+..|-|--.|--.....+|......+-..++.. ..+. ++- -+|==+-+.|.+.+.|++|.+.|||+.|+-+ |
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~-riir---d~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl--E 83 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHI-RIIR---DGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNSL--E 83 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEE-EEee---CCC-CceEEEEEEECCHHHHHHHHHHhCCCccCCC--C
Confidence 3344444445554433557776666666555432 1222 331 2566788899999999999999999998766 5
Q ss_pred ceeeeeeecC
Q 015240 273 KQIRCEMVNS 282 (411)
Q Consensus 273 K~ikce~~~~ 282 (411)
- ..|.++=-
T Consensus 84 p-E~ChvvfV 92 (110)
T PF07576_consen 84 P-ETCHVVFV 92 (110)
T ss_pred C-ceeEEEEE
Confidence 5 34877644
No 113
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=78.49 E-value=1 Score=54.24 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=23.8
Q ss_pred ceecCCCCCCCCCCCCCCcCCCCccccccccchHHH
Q 015240 91 EVVESDGSDSDDFDDFDEDDADNDEDEGMMISFGKM 126 (411)
Q Consensus 91 ~~v~~d~~~~d~~~d~~~~~~~~~~dE~~~~~~~~M 126 (411)
-|+|.|++++|++||+++||++++++|+++-+|+|-
T Consensus 151 ~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~de 186 (2849)
T PTZ00415 151 FVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDE 186 (2849)
T ss_pred cccCCccccccccccccccccccccccccccCCCch
Confidence 344444455555555666677777888888898875
No 114
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=78.27 E-value=0.92 Score=39.58 Aligned_cols=34 Identities=29% Similarity=0.545 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCcCCCCccccccccchHHHHHHhh
Q 015240 98 SDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLE 131 (411)
Q Consensus 98 ~~~d~~~d~~~~~~~~~~dE~~~~~~~~M~~wl~ 131 (411)
+++|+++++++|++|++++|.-+..|+.-+.+|-
T Consensus 21 eeededEEedDddddee~de~p~p~fgea~~~~~ 54 (101)
T PF09026_consen 21 EEEDEDEEEDDDDDDEEEDEVPVPEFGEAMAYFT 54 (101)
T ss_dssp -------------------------HHHHHHHHH
T ss_pred hhhhhcccccccccccccccccchhHHHHHhhcc
Confidence 3344445566777777777988888887766664
No 115
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=76.30 E-value=11 Score=32.32 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=41.2
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS 262 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N 262 (411)
|+++.|....|+---.|++-. ..||..+|..+|+ |+|- =+.+ | -|||.+...++|..++-.++
T Consensus 1 G~d~~P~RdHVFhltFPkeWK-~~DI~qlFspfG~-I~Vs--Wi~d--T-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 1 GPDPQPSRDHVFHLTFPKEWK-TSDIYQLFSPFGQ-IYVS--WIND--T-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SS----SGCCEEEEE--TT---HHHHHHHCCCCCC-EEEE--EECT--T-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCCCCCcceEEEEeCchHhh-hhhHHHHhccCCc-EEEE--EEcC--C-------cEEEEeecHHHHHHHHHHhc
Confidence 355666666666555999743 6699999999999 4453 3333 4 69999999999998877664
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=75.89 E-value=6.3 Score=40.98 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=55.5
Q ss_pred CCccEEEEcCCC--CC--Cc------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 192 PSGIRVRLLNLP--KK--KN------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 192 ~dgvRVrVGNLP--kk--~n------i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
-.--+|-|.||= .. ++ +..||.+=-..+|-|-+|. +-+| -..|=+-|+|.+.+.|+.+|+.+
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv---v~d~-----hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV---VYDR-----HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE---Eecc-----CCCceeEEEeCChHHHHHHHHHh
Confidence 355678888872 11 12 1335566667899998884 4443 44899999999999999999999
Q ss_pred CCceeccceeeceeeeeeecC
Q 015240 262 SRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 262 NGq~~~fgKVEK~ikce~~~~ 282 (411)
+|+-|.+- +|.-++-++
T Consensus 335 ~GR~fdgR----ql~A~i~DG 351 (382)
T KOG1548|consen 335 DGRWFDGR----QLTASIWDG 351 (382)
T ss_pred cCeeecce----EEEEEEeCC
Confidence 99997744 444444443
No 117
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=73.94 E-value=1.4 Score=43.47 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=34.1
Q ss_pred CCCCccccceecchHHHHHHHHHHhhHHhhhhhhccccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLEN 171 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~ 171 (411)
|++|||.+-|-|.+.++++++-.----+||-+|.|++.-
T Consensus 52 rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 52 RSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred cccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 999999999999999999997777667999999887543
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=73.32 E-value=10 Score=40.92 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhc-cCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFK-GVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk-~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
...++-=||+||-||+-.+ ..+|-.+|. -+|+|.=+- -..|.|-+ -.||=|=|||.+-..=.++|+. ..|.
T Consensus 365 q~lDprrTVFVGgvprpl~-A~eLA~imd~lyGgV~yaG--IDtD~k~K--YPkGaGRVtFsnqqsYi~AIsa---rFvq 436 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLT-AEELAMIMEDLFGGVLYVG--IDTDPKLK--YPKGAGRVTFSNQQAYIKAISA---RFVQ 436 (520)
T ss_pred cccCccceEEecCCCCcch-HHHHHHHHHHhcCceEEEE--eccCcccC--CCCCcceeeecccHHHHHHHhh---heEE
Confidence 3445677999999999754 779999996 899988776 44665565 6799999999998876666664 3333
Q ss_pred c--ceeec
Q 015240 268 F--GKVQK 273 (411)
Q Consensus 268 f--gKVEK 273 (411)
. ++|.|
T Consensus 437 l~h~d~~K 444 (520)
T KOG0129|consen 437 LDHTDIDK 444 (520)
T ss_pred Eeccccce
Confidence 3 55555
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=72.82 E-value=21 Score=38.22 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=71.2
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
.+.|-|.||-+..-...-|-.+|.-+|.|.||+ ---|+|+ =|.|.+.+...|.-+++-|+|+.+-+ |
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVk--il~nkkd-------~ALIQmsd~~qAqLA~~hL~g~~l~g----k 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVK--ILYNKKD-------NALIQMSDGQQAQLAMEHLEGHKLYG----K 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEE--eeecCCc-------ceeeeecchhHHHHHHHHhhcceecC----c
Confidence 588999999998632556999999999999997 4556544 49999999999999999999999875 4
Q ss_pred eeeeeeecCCCCCCCC--CCCCCCCCCCCcccccccc
Q 015240 274 QIRCEMVNSSSSNSVD--GHSSDDTSGYPKIKVYGFE 308 (411)
Q Consensus 274 ~ikce~~~~~S~~~~~--~~s~~s~~~~p~~~v~~fe 308 (411)
.|++-.-.-+--.-+. ..+.+-|--+++..+.+|-
T Consensus 364 ~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfk 400 (492)
T KOG1190|consen 364 KLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFK 400 (492)
T ss_pred eEEEeeccCccccCCCCCCccccccccCCCCchhhcc
Confidence 4444332211111111 1133335556666777775
No 120
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=71.48 E-value=2 Score=42.21 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=40.5
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCC
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP 176 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~ 176 (411)
-.-+|||+.+-||+..-++.||+.|.+.- +|+.+-+-+++.++...
T Consensus 51 Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr~~d 97 (256)
T KOG4207|consen 51 TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGRPSD 97 (256)
T ss_pred cccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCCCcc
Confidence 45899999999999999999999999987 99999888888866633
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=70.03 E-value=13 Score=34.14 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=47.8
Q ss_pred CCCCccEEEEcC--CCCCCchH----HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 015240 190 DMPSGIRVRLLN--LPKKKNIH----RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 190 ~~~dgvRVrVGN--LPkk~ni~----kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG 263 (411)
+.+..|-|+|-+ .|.+.-+. .+|=+.|+.+|+++-|| -+.. + -.|||.+-+.|.+++. ++|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvR--fv~~--~--------mwVTF~dg~sALaals-~dg 91 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVR--FVGD--T--------MWVTFRDGQSALAALS-LDG 91 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEE--EETT--C--------EEEEESSCHHHHHHHH-GCC
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEE--EeCC--e--------EEEEECccHHHHHHHc-cCC
Confidence 334567788877 44443333 37888899999999887 3333 2 4899999999999998 799
Q ss_pred ceecccee
Q 015240 264 QIIAFGKV 271 (411)
Q Consensus 264 q~~~fgKV 271 (411)
..|.+-.|
T Consensus 92 ~~v~g~~l 99 (146)
T PF08952_consen 92 IQVNGRTL 99 (146)
T ss_dssp SEETTEEE
T ss_pred cEECCEEE
Confidence 99987333
No 122
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=69.84 E-value=5.6 Score=41.35 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=50.1
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCeeE---EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGIIN---IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgvis---Ikpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+.|.|.+||.+.. .++|.+-...++.-+. +.||...- .+--.++|||+|...++-..|..-|+|+.|..
T Consensus 8 ~Kvv~rrlpp~l~-~~~~~eqi~p~~~~v~~~~F~~a~~s~----~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 8 VKVVVRRLPPKLT-EEQLLEQINPFPEHVNWEFFAKADESL----RNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred eeeeeecCCCccc-HHHHhhhcCCCccccchheeccccccc----hhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 5688999999854 5566665555665443 33332222 23448999999999999999999999999876
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.61 E-value=0.63 Score=52.15 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=50.9
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~ 265 (411)
+.++++|.|||-++- .-||...|...|.+-.+.+.--.| ++ .-||-|||.|.+.+.|.++|+...+..
T Consensus 666 ~~~~~fvsnl~~~~~-~~dl~~~~~~~~~~e~vqi~~h~n--~~--~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMS-EEDLSERFSPSGTIEVVQIVIHKN--EK--RFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHHHHhhcchhhc-CchhhhhcCccchhhhHHHHHHhh--cc--ccccceeeEeecCCchhhhhhhhhhhh
Confidence 567899999999853 668988886666655555332344 33 458999999999999999999755544
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=66.35 E-value=17 Score=38.71 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=44.2
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhc-------cCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFK-------GVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk-------~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
.-+-||..-||.++. ..|+.+.|. +.-+|+=|+ ... +..-|=|||-|+.+++|+.++.+
T Consensus 160 ~qvivRmRGLPfdat-~~dVv~FF~~~cpv~~g~egvLFV~--rpd------grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDAT-ALDVVEFFGPPCPVTGGTEGVLFVT--RPD------GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cceEEEecCCCCCcc-hHHHHHhcCCCCcccCCccceEEEE--CCC------CCcccceEEEecCHHHHHHHHHH
Confidence 457899999999975 889999995 333444443 223 34456799999999999998876
No 125
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=65.79 E-value=3.5 Score=40.94 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=43.7
Q ss_pred ccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 015240 217 KGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 217 k~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~ 282 (411)
...|+|..++ +-.|. -.-=+|=+||.|..+++|.++++-|||.-|. -+||-||.++-
T Consensus 91 ~kygEiee~~--Vc~Nl---~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~pv 147 (260)
T KOG2202|consen 91 DKYGEIEELN--VCDNL---GDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELSPV 147 (260)
T ss_pred HHhhhhhhhh--hhccc---chhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeecCc
Confidence 3788888885 33332 1234799999999999999999999999987 46777777654
No 126
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=65.69 E-value=2.6 Score=29.86 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR 159 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr 159 (411)
++++|||++.|.+.+.+++++++|.+..
T Consensus 36 ~~~~~~a~V~F~~~~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 36 GKSKGYAFVEFESEEDAEKALEELNGKK 63 (70)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccceEEEEEcCHHHHHHHHHHcCCCE
Confidence 4789999999999999999999998754
No 127
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=64.39 E-value=4.5 Score=40.85 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=6.4
Q ss_pred cccccCchhhHhhh
Q 015240 50 AMFVSSPQQTQQAR 63 (411)
Q Consensus 50 ~~f~ss~~~~~~~~ 63 (411)
||++-+.-+-|+.+
T Consensus 226 SmStR~hkyGRQ~~ 239 (314)
T PF06524_consen 226 SMSTRSHKYGRQGQ 239 (314)
T ss_pred eeeeecchhccccC
Confidence 34444444444443
No 128
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=63.73 E-value=19 Score=38.52 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=53.6
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
|++-++...|+|.... ++||+.+|.+-|+.++.+--- ++-|=.|.+.+.+.|.|-.+.-.+..+...
T Consensus 412 PpsatlHlsnip~svs-ee~lk~~f~~~g~~vkafkff--------~kd~kmal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVS-EEDLKNLFQEPGGQVKAFKFF--------QKDRKMALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred CchhheeeccCCcccc-hhHHHHhhhcCCceEEeeeec--------CCCcceeecccCChhHhhhhccccccccCC
Confidence 7888999999999864 889999999999998887111 233557999999999998877766666654
No 129
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=62.68 E-value=8.3 Score=41.09 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=50.7
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccc---cC----CCCCCCc--ccceEEEeecCHHHHHHHHHHhC
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVS---GN----KKTKDPI--CKGFAFVDFESEDYATRFVQLFS 262 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~---~n----rKTgDp~--CKGFAFVtf~seedA~rfIEk~N 262 (411)
.+-+|-+-|||.+.. -+-|..+|..||.|-+|++-.- -+ ...+++. .|==|+|.|...+.|..+.|.+|
T Consensus 230 ~srtivaenLP~Dh~-~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHS-YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchH-HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 678999999999853 5689999999999999985421 11 0011111 13348999999999999999984
No 130
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=62.33 E-value=4.1 Score=43.20 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=11.4
Q ss_pred cCCCCCCch-------HHHHHHHhcc
Q 015240 200 LNLPKKKNI-------HRDLKSAFKG 218 (411)
Q Consensus 200 GNLPkk~ni-------~kDL~~aFk~ 218 (411)
=+||-++.| ++=|++||..
T Consensus 187 P~LPDSTDFVCGTLDEDRPLE~AY~S 212 (458)
T PF10446_consen 187 PELPDSTDFVCGTLDEDRPLEAAYIS 212 (458)
T ss_pred CCCCCcccccCCCcCCcchHHHHHHH
Confidence 367766554 3348888744
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=61.65 E-value=7.7 Score=42.06 Aligned_cols=70 Identities=26% Similarity=0.345 Sum_probs=46.9
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC--------------------------CCCCCcccceEEE
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK--------------------------KTKDPICKGFAFV 246 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nr--------------------------KTgDp~CKGFAFV 246 (411)
--.++-|+|+|.+.. +.||-.+..+.=.=+...++.+-|+ +++ ...|+|||
T Consensus 360 ~Rtt~~i~ni~n~~~-~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nk--cNvGYAFI 436 (549)
T KOG4660|consen 360 RRTTVMIKNIPNKYG-QLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNK--CNVGYAFI 436 (549)
T ss_pred chhhhhhhccccchh-HHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccc--cccceeEE
Confidence 345667888886643 7788777754433232222233332 121 44799999
Q ss_pred eecCHHHHHHHHHHhCCce
Q 015240 247 DFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 247 tf~seedA~rfIEk~NGq~ 265 (411)
++-+-+.+-+|.+.|||+.
T Consensus 437 Nm~sp~ai~~F~kAFnGk~ 455 (549)
T KOG4660|consen 437 NMTSPEAIIRFYKAFNGKK 455 (549)
T ss_pred eecCHHHHHHHHHHHcCCc
Confidence 9999999999999999986
No 132
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=61.49 E-value=20 Score=38.50 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHHhhcCCCCcccc-------ceecchHHHHHHHHHHhh--H-HhhhhhhcccccCCCCCCCCCCC---CCCCCCCCCCC
Q 015240 127 RRWLENKPRGFGEG-------KVYDTSIEDKLLQEIQQS--R-EAQMANINKLENELLKPSPKKDE---PKKKEPEDMPS 193 (411)
Q Consensus 127 ~~wl~nKPrGFG~g-------K~YdT~iEeKlLeEM~~s--r-~araaNld~~~~~P~~~n~~k~~---~akk~~~~~~d 193 (411)
.+..++..-||+-| +.-.|..+-.-|-=|+.. . -.|.+..+....++..+++.... ........+.+
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~ 398 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIP 398 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCc
Confidence 34445555555533 333555555556666663 1 56777777777766655222100 00001122223
Q ss_pred ccEEEEcCCCCCCc---------hHHHHHHHhccCCCeeEEeeccc---cCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 194 GIRVRLLNLPKKKN---------IHRDLKSAFKGVPGIINIIPVVS---GNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 194 gvRVrVGNLPkk~n---------i~kDL~~aFk~vGgvisIkpav~---~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
.--|...|+=-.-. |-.|++.=+.++|.|.+|.++.. .++.-| =|=-||-|++.+++.++.+.|
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G----~GkVFVefas~ed~qrA~~~L 474 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPG----TGKVFVEFADTEDSQRAMEEL 474 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCC----cccEEEEecChHHHHHHHHHc
Confidence 33344455321111 23366777789999999998865 333222 355799999999999999999
Q ss_pred CCceecc
Q 015240 262 SRQIIAF 268 (411)
Q Consensus 262 NGq~~~f 268 (411)
+|..|..
T Consensus 475 ~GrKF~n 481 (500)
T KOG0120|consen 475 TGRKFAN 481 (500)
T ss_pred cCceeCC
Confidence 9999773
No 133
>PLN03213 repressor of silencing 3; Provisional
Probab=57.50 E-value=4.1 Score=44.33 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=33.6
Q ss_pred hcCCCCccccceecc--hHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 131 ENKPRGFGEGKVYDT--SIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT--~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
+.+-|||||+.+..+ +-+.+++.++.+.+ .||.+-+++++.
T Consensus 44 RETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 44 RTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 445699999999988 67999999999966 888887775543
No 134
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=57.07 E-value=5.8 Score=42.12 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=6.3
Q ss_pred CCCCcccccee
Q 015240 133 KPRGFGEGKVY 143 (411)
Q Consensus 133 KPrGFG~gK~Y 143 (411)
--.||+..+-.
T Consensus 105 nE~GFAdSDDE 115 (458)
T PF10446_consen 105 NEAGFADSDDE 115 (458)
T ss_pred ccccccccccc
Confidence 44677766433
No 135
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=55.48 E-value=15 Score=40.70 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCee-EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII-NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi-sIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
.+...+.-|||.||=+-.+ ...|++|+..-|++| .+- -.+- |+ -.||+|.++++|.+.++.|+|...-
T Consensus 439 sR~~~SnvlhI~nLvRPFT-lgQLkelL~rtgg~Vee~W--mDkI-KS-------hCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFT-LGQLKELLGRTGGNVEEFW--MDKI-KS-------HCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCCccceEeeecccccch-HHHHHHHHhhccCchHHHH--HHHh-hc-------ceeEecccHHHHHHHHHHHhccccC
Confidence 3445788999999976532 678999998666544 332 1121 23 3599999999999999999997654
No 136
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=55.11 E-value=7 Score=42.68 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=13.1
Q ss_pred CccceecccccccCchhhHhhhhhhhhhhc
Q 015240 42 LYPFISKNAMFVSSPQQTQQARLGFKTIHN 71 (411)
Q Consensus 42 l~pf~~~n~~f~ss~~~~~~~~~~f~~v~~ 71 (411)
||-|+++.+.+ .++-+.+-|..+..
T Consensus 594 LLslls~~s~l-----lR~~~~~vf~~~~~ 618 (784)
T PF04931_consen 594 LLSLLSQPSAL-----LRKVSEQVFEAFCP 618 (784)
T ss_pred HHHHHhCcchH-----HHHHHHHHHHHHHh
Confidence 55666665544 34445555555443
No 137
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=53.00 E-value=22 Score=40.30 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=85.2
Q ss_pred cccccchHHHHHHhhcCC-CCccccceecchHHHHHHHHHHh---hH---HhhhhhhcccccC------CCCCC------
Q 015240 117 EGMMISFGKMRRWLENKP-RGFGEGKVYDTSIEDKLLQEIQQ---SR---EAQMANINKLENE------LLKPS------ 177 (411)
Q Consensus 117 E~~~~~~~~M~~wl~nKP-rGFG~gK~YdT~iEeKlLeEM~~---sr---~araaNld~~~~~------P~~~n------ 177 (411)
-+.-++-.++.+-+-++| -|-||++|-..+-.-++|.---- .| .+-+.|+-.-.+. |.+..
T Consensus 333 ~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~ 412 (944)
T KOG4307|consen 333 PGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGR 412 (944)
T ss_pred CcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccCccccccCCCCcccccCCC
Confidence 455666677777788888 79999999998888888742111 00 0001111000000 00000
Q ss_pred CCCCCCCCC-----CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE-EeeccccCCCCCCCcccceEEEeecCH
Q 015240 178 PKKDEPKKK-----EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN-IIPVVSGNKKTKDPICKGFAFVDFESE 251 (411)
Q Consensus 178 ~~k~~~akk-----~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis-Ikpav~~nrKTgDp~CKGFAFVtf~se 251 (411)
+..-.+++. .+.+...|..|||--||+.+. .++.-..|++.--|.- |.++..-+- .-+|=|||-|.++
T Consensus 413 p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~-~~~~v~~f~~~~~Ved~I~lt~~P~~-----~~~~~afv~F~~~ 486 (944)
T KOG4307|consen 413 PIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTP-IVPPVNKFMGAAAVEDFIELTRLPTD-----LLRPAAFVAFIHP 486 (944)
T ss_pred CCCCcccccCCCCCCCCCCCccceEEeccCCcccc-ccchhhhhhhhhhhhheeEeccCCcc-----cccchhhheeccc
Confidence 111112222 344556899999999999865 7788888888777776 765544221 4578999999998
Q ss_pred HHHHHHHHH
Q 015240 252 DYATRFVQL 260 (411)
Q Consensus 252 edA~rfIEk 260 (411)
+.+..+..-
T Consensus 487 ~a~~~a~~~ 495 (944)
T KOG4307|consen 487 TAPLTASSV 495 (944)
T ss_pred cccchhhhc
Confidence 887777654
No 138
>smart00360 RRM RNA recognition motif.
Probab=48.34 E-value=10 Score=25.55 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCCccccceecchHHHHHHHHHHh
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQ 157 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~ 157 (411)
+++|||++.+.+...+.++++.|.+
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcCC
Confidence 6689999999999999999877764
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=48.18 E-value=19 Score=37.01 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=46.5
Q ss_pred EEEEcCCCCCCchHH-HHH--HHhccCCCeeEEeeccccCC--CCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 196 RVRLLNLPKKKNIHR-DLK--SAFKGVPGIINIIPVVSGNK--KTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 196 RVrVGNLPkk~ni~k-DL~--~aFk~vGgvisIkpav~~nr--KTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
-+||--||... .+. .|+ +-|..+|.+.+|. ..+.+ ..+++.|=. +|+||..+++|+++|....|...- |+
T Consensus 79 lvyvvgl~~~~-ade~~l~~~eyfgqygki~ki~--~~~~~S~~s~~~~~~s-~yITy~~~eda~rci~~v~g~~~d-g~ 153 (327)
T KOG2068|consen 79 LVYVVGLPLDL-ADESVLERTEYFGQYGKINKIV--KNKDPSSSSSSGGTCS-VYITYEEEEDADRCIDDVDGFVDD-GR 153 (327)
T ss_pred hhhhhCCCccc-cchhhhhCcccccccccceEEe--ecCCcccccCCCCCCc-ccccccchHhhhhHHHHhhhHHhh-hh
Confidence 36777777653 133 343 4577778998886 22222 224444444 999999999999999998886533 44
Q ss_pred e
Q 015240 271 V 271 (411)
Q Consensus 271 V 271 (411)
.
T Consensus 154 ~ 154 (327)
T KOG2068|consen 154 A 154 (327)
T ss_pred h
Confidence 3
No 140
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=48.16 E-value=33 Score=29.36 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=41.4
Q ss_pred CCCCCCchHHHHHHHhccCCCeeEEeeccccCCC----CCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 201 NLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKK----TKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 201 NLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrK----TgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
=-|.. ....+-..|+.+|.|+..+-. .++-. ..-|.-..+-.++|.+..+|.|++. .||.-|.+
T Consensus 13 Gfp~~--~~~~Vl~~F~~~G~Ile~~~~-~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 13 GFPPS--ASNQVLRHFSSFGTILEHFEV-LRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp ---GG--GHHHHHHHHHCCS-EECEEGG-G----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred ccCHH--HHHHHHHHHHhcceEEEeecc-cccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 35664 355788899999999988600 00000 0002236789999999999999998 79998876
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=47.21 E-value=41 Score=38.26 Aligned_cols=66 Identities=24% Similarity=0.193 Sum_probs=50.6
Q ss_pred EEEEcCCCCCCchHHHHHHHh---ccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 196 RVRLLNLPKKKNIHRDLKSAF---KGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aF---k~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
-|.+.|.|++.. -+|+-+.| +-.++-|+|+-... ++.-|=+.|.|++.+.|.++++-++|+.|.--
T Consensus 869 V~~~~n~Pf~v~-l~dI~~FF~dY~~~p~sI~~r~nd~-------G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr 937 (944)
T KOG4307|consen 869 VLSCNNFPFDVT-LEDIVEFFNDYEPDPNSIRIRRNDD-------GVPTGECMVAFESQEEARRASMDLDGQKIRNR 937 (944)
T ss_pred EEEecCCCcccc-HHHHHHHhcccccCCCceeEeecCC-------CCcccceeEeecCHHHHHhhhhccccCcccce
Confidence 578999999865 55666666 55677777762222 35567788999999999999999999998643
No 142
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=45.97 E-value=11 Score=34.33 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=21.5
Q ss_pred cceecCCCCCCCCCCCCCCcC--CCCccccccccchHHHHHHhhc
Q 015240 90 SEVVESDGSDSDDFDDFDEDD--ADNDEDEGMMISFGKMRRWLEN 132 (411)
Q Consensus 90 ~~~v~~d~~~~d~~~d~~~~~--~~~~~dE~~~~~~~~M~~wl~n 132 (411)
...+++++++.|+.|++|+.+ ++.+++|+.......+.+-|..
T Consensus 52 ~~~~d~~~~~~d~~d~dde~~~d~~~~~~d~nP~~~i~l~eiLaP 96 (149)
T PF08595_consen 52 PPRIDEEGDEIDDSDEDDESDEDADEDAADENPYKLIRLEEILAP 96 (149)
T ss_pred ccccCcccccccccccccccchhhhhhhhccCchhhccHHHHhcc
Confidence 344556665544333333332 2333344555555667777654
No 143
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=45.47 E-value=2.1 Score=30.67 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCccccceecchHHHHHHHHHHhhH-Hhhhhhhc
Q 015240 135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANIN 167 (411)
Q Consensus 135 rGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld 167 (411)
+|++++.+.+..-+.++++.+.+.. .++.+.+.
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~ 54 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVS 54 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 5999999999999999999998765 55555544
No 144
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=45.47 E-value=7 Score=35.27 Aligned_cols=7 Identities=43% Similarity=0.330 Sum_probs=3.0
Q ss_pred cccccCC
Q 015240 33 KLNLALP 39 (411)
Q Consensus 33 ~~~~~~~ 39 (411)
++.|++-
T Consensus 63 kv~lAtL 69 (149)
T PF03066_consen 63 KVPLATL 69 (149)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 4444443
No 145
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=45.37 E-value=76 Score=34.02 Aligned_cols=98 Identities=17% Similarity=0.112 Sum_probs=0.0
Q ss_pred hcccccCCCCCCCC-------CCCCCCC-CCCCCCCccEEEEcCCCCCCchHHH-HHHHhccCCCeeEEeeccccCCCCC
Q 015240 166 INKLENELLKPSPK-------KDEPKKK-EPEDMPSGIRVRLLNLPKKKNIHRD-LKSAFKGVPGIINIIPVVSGNKKTK 236 (411)
Q Consensus 166 ld~~~~~P~~~n~~-------k~~~akk-~~~~~~dgvRVrVGNLPkk~ni~kD-L~~aFk~vGgvisIkpav~~nrKTg 236 (411)
++++..++..-+-+ +.+.-.+ +++.+...--|-++=|-.---|.-| |-.+-...|.|+|| ++..| +|
T Consensus 84 Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRI---vIfkk-ng 159 (494)
T KOG1456|consen 84 VNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRI---VIFKK-NG 159 (494)
T ss_pred eehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEE---EEEec-cc
Q ss_pred CCcccceEEEeecCHHHHHHHHHHhCCceecc----ceee
Q 015240 237 DPICKGFAFVDFESEDYATRFVQLFSRQIIAF----GKVQ 272 (411)
Q Consensus 237 Dp~CKGFAFVtf~seedA~rfIEk~NGq~~~f----gKVE 272 (411)
==|.|.|++.+.|.|+-+.+||..|-- +|||
T Consensus 160 -----VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 160 -----VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred -----eeeEEeechhHHHHHHHhhcccccccccceeEEEE
No 146
>KOG2830 consensus Protein phosphatase 2A-associated protein [Signal transduction mechanisms]
Probab=43.50 E-value=17 Score=37.26 Aligned_cols=53 Identities=32% Similarity=0.477 Sum_probs=34.3
Q ss_pred hhhhhHHhhhhhhccccccCCCCCCCCCCCccccccCCCCCccceecccccccCchhhHhhhhh
Q 015240 2 EHELAVLQQQERMINVGTVSPFDSASLLPPKKLNLALPNPLYPFISKNAMFVSSPQQTQQARLG 65 (411)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~pf~~~n~~f~ss~~~~~~~~~~ 65 (411)
..|+..+-|++|..--|+.++-++.+ ++.+... -| |+.||+..+. .+|..++|
T Consensus 198 lee~E~i~~e~r~lkE~~s~r~~st~--~t~~~e~-~p-~~~~fi~~r~-------~~q~kVfG 250 (324)
T KOG2830|consen 198 LEEEESIDQEERLLKEGESSRDPSTS--NTSRGET-RP-PLFPFIITRN-------ETQKKVFG 250 (324)
T ss_pred HHHHHHHHHHHHHHhccccccccccC--ccccccC-CC-CcchHHHHHH-------HHhhhhhh
Confidence 34677777888988888888844433 4455554 34 8888876543 45566655
No 147
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=42.27 E-value=63 Score=35.19 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=96.8
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccc---eEEEeecCHHHHHHHHHHhCCceec-
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKG---FAFVDFESEDYATRFVQLFSRQIIA- 267 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKG---FAFVtf~seedA~rfIEk~NGq~~~- 267 (411)
--+-.|+||-||-..+ ++.|.+-|..||.+..=-|- -.+.+-+ -..|| ++|+-|++|.....+|..+.--.-+
T Consensus 257 ~~S~KVFvGGlp~dis-e~~i~~~F~~FGs~~VdWP~-k~~~~~~-~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDIT-EAQINASFGQFGSVKVDWPG-KANSRGR-APPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccceeecCCCcccc-HHHHHhhcccccceEeecCC-Ccccccc-CCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 3567899999999854 88999999999997665552 1111111 34578 9999999999988887765431100
Q ss_pred cceeeceeeeeeecCCCCCCCCCCCCCCCCCCCcccc-cccccCCCCCCCCCCCccchhHhhhcCCCCCC---------c
Q 015240 268 FGKVQKQIRCEMVNSSSSNSVDGHSSDDTSGYPKIKV-YGFEEDPGAHFDDNEDSYGSVMEALSDGFEPD---------D 337 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~~~~~~~s~~s~~~~p~~~v-~~fee~~~~~~d~n~~~~~s~~eetsd~~dd~---------d 337 (411)
|.+|.- +. +.+--.++ |=+=.| +|+-++ .+-..|.- -
T Consensus 334 yf~vss-----------~~----------~k~k~VQIrPW~laD------s~fv~d------~sq~lDprrTVFVGgvpr 380 (520)
T KOG0129|consen 334 YFKVSS-----------PT----------IKDKEVQIRPWVLAD------SDFVLD------HNQPIDPRRTVFVGGLPR 380 (520)
T ss_pred EEEEec-----------Cc----------ccccceeEEeeEecc------chhhhc------cCcccCccceEEecCCCC
Confidence 122211 00 00000111 222211 211111 11111111 0
Q ss_pred ccchhHhhhhhccc-ceeEeeecCCCCCcccccccccccccHHHHHHHHHHhhhhcc
Q 015240 338 ELDFAELEEVREDL-EFVTVSELNGSNNTKPAKKSATDSSSANQRKKIQAIEKKLTA 393 (411)
Q Consensus 338 ~l~~~e~ed~~e~~-e~~s~~~~d~~d~~~~~~~~~~~s~~~kq~~~~~a~kkk~~~ 393 (411)
-|..+||--+-|.+ --|.--++|+|.-.+--+++.--.+| +|+-=++|+..+-.+
T Consensus 381 pl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFs-nqqsYi~AIsarFvq 436 (520)
T KOG0129|consen 381 PLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFS-NQQAYIKAISARFVQ 436 (520)
T ss_pred cchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeec-ccHHHHHHHhhheEE
Confidence 35677777776633 45677788999888888888877775 677777888776443
No 148
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=42.26 E-value=48 Score=31.01 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC--Cceeccceeeceeeeeee
Q 015240 209 HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS--RQIIAFGKVQKQIRCEMV 280 (411)
Q Consensus 209 ~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N--Gq~~~fgKVEK~ikce~~ 280 (411)
.+.|+.+|..++.++++.+=.+..| ..|.|.+.+.|.++...+. |..|++. .++|..+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrR----------i~v~f~~~~~A~~~r~~l~~~~~~~~g~----~l~~yf~ 68 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRR----------IRVVFESPESAQRARQLLHWDGTSFNGK----RLRVYFG 68 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTE----------EEEE-SSTTHHHHHHHTST--TSEETTE----E-EEE--
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCE----------EEEEeCCHHHHHHHHHHhcccccccCCC----ceEEEEc
Confidence 5689999999999999974444433 6899999999999999999 8887753 3666665
No 149
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.21 E-value=12 Score=43.48 Aligned_cols=14 Identities=0% Similarity=-0.190 Sum_probs=5.6
Q ss_pred cccCCCCCccceec
Q 015240 35 NLALPNPLYPFISK 48 (411)
Q Consensus 35 ~~~~~~pl~pf~~~ 48 (411)
+---|.|+--|--+
T Consensus 1346 ~a~dYs~iaTi~v~ 1359 (1516)
T KOG1832|consen 1346 DAIDYSDIATIPVD 1359 (1516)
T ss_pred cccccccceeeecc
Confidence 33334444443333
No 150
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=40.68 E-value=12 Score=38.98 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=38.6
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
+.-++|||.|-+...+.+|++-+|.-++- .||-|.+|.++.+
T Consensus 132 ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 132 ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 44899999999999999999999999987 9999999988877
No 151
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=37.91 E-value=29 Score=30.67 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=24.0
Q ss_pred cceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 241 KGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 241 KGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
=|-..+-|.+.++|.+|++++.|+-+.|-.|
T Consensus 114 Mg~~~~aF~~~~~A~~F~~~~GG~v~~f~ev 144 (149)
T PF05573_consen 114 MGPDLIAFASKEDAEAFAKEHGGKVLTFDEV 144 (149)
T ss_dssp TS--EEEES-HHHHHHHHHHTEEEEEEGGG-
T ss_pred CCCcccccCCHHHHHHHHHHcCCEEeeHHHC
Confidence 3688999999999999999999988888644
No 152
>PHA03346 US22 family homolog; Provisional
Probab=37.15 E-value=27 Score=37.64 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCcCCCCccccccccchHHHHHHhhcC
Q 015240 96 DGSDSDDFDDFDEDDADNDEDEGMMISFGKMRRWLENK 133 (411)
Q Consensus 96 d~~~~d~~~d~~~~~~~~~~dE~~~~~~~~M~~wl~nK 133 (411)
|.++.|+++|++.|+..-+.||...-+..+..+|+..+
T Consensus 428 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (520)
T PHA03346 428 DDDEGDDEDDDDWEDLGFDLDEDDVYDLKDVDEWRLER 465 (520)
T ss_pred cccccccccccccccCCccccccccccchhhhhhhhcc
Confidence 33444555555555666667778888888899998763
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=36.02 E-value=32 Score=33.92 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=56.8
Q ss_pred CCccEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 192 PSGIRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..-.+.++|+|... + +.+...++...|.++-.. .+.+.... .-|||+++.|+..+.+..+++..-.+....-+
T Consensus 86 ~~~~~~f~g~~s~~--~e~~~~~~~~~~~g~~~~~~--~S~~~~~~--~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSEN--IEESEDDNFSSEAGLRVDAR--SSSLEDSL--SSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccccc--hhhccccccchhhcCcccch--hhhhcccc--ccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 45778999999995 5 456778888888776665 44444443 67999999999999999999965554443344
Q ss_pred eeceee
Q 015240 271 VQKQIR 276 (411)
Q Consensus 271 VEK~ik 276 (411)
+++++.
T Consensus 160 ~~~dl~ 165 (285)
T KOG4210|consen 160 GEKDLN 165 (285)
T ss_pred ccCccc
Confidence 455443
No 154
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.85 E-value=20 Score=38.30 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=7.8
Q ss_pred ccCCcceecCCCCC
Q 015240 86 IKGGSEVVESDGSD 99 (411)
Q Consensus 86 ~~g~~~~v~~d~~~ 99 (411)
++|.+.+-+.|+||
T Consensus 265 v~~~ss~~edD~Dd 278 (514)
T KOG3130|consen 265 VNGSSSYHEDDDDD 278 (514)
T ss_pred ccCCCCcccccccc
Confidence 46777666444443
No 155
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.45 E-value=34 Score=35.48 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=32.5
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCCCe-eEEeeccccCCCCCCCcccceEEEeecCHH
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVPGI-INIIPVVSGNKKTKDPICKGFAFVDFESED 252 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vGgv-isIkpav~~nrKTgDp~CKGFAFVtf~see 252 (411)
.-||+||||++.. -+||+..+..-+-+ .+|. --+. +|=+|++|.+..
T Consensus 331 ~di~~~nl~rd~r-v~dlk~~lr~~~~~pm~is--wkg~--------~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIR-VKDLKSELRKRECTPMSIS--WKGH--------FGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccc-hHHHHHHHHhcCCCceeEe--eecC--------CcceeEecCCcc
Confidence 3599999999732 67999999777653 2231 2233 677899998754
No 156
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=34.04 E-value=40 Score=35.74 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=10.6
Q ss_pred HHHHHHHhccCCCeeEEe
Q 015240 209 HRDLKSAFKGVPGIINII 226 (411)
Q Consensus 209 ~kDL~~aFk~vGgvisIk 226 (411)
+-.+-++|.+||.+.+-+
T Consensus 180 dpkV~e~Y~~Vg~~lsky 197 (449)
T KOG3871|consen 180 DPKVIEMYEGVGSVLSKY 197 (449)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 444556666666666554
No 157
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=33.78 E-value=31 Score=33.13 Aligned_cols=6 Identities=17% Similarity=0.363 Sum_probs=2.4
Q ss_pred hhhhcC
Q 015240 67 KTIHNG 72 (411)
Q Consensus 67 ~~v~~~ 72 (411)
..++++
T Consensus 169 v~l~gG 174 (218)
T PF14283_consen 169 VALIGG 174 (218)
T ss_pred HHHhhc
Confidence 334444
No 158
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=33.73 E-value=23 Score=38.90 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=3.3
Q ss_pred HHHHHhc
Q 015240 211 DLKSAFK 217 (411)
Q Consensus 211 DL~~aFk 217 (411)
-|.++|+
T Consensus 740 ~La~~Fk 746 (784)
T PF04931_consen 740 QLAAIFK 746 (784)
T ss_pred HHHHHHH
Confidence 3445554
No 159
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=32.64 E-value=98 Score=34.52 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=49.8
Q ss_pred CCCCCCCccE--EEEcCCCCCCchHHHHHHHhcc--CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHH---
Q 015240 187 EPEDMPSGIR--VRLLNLPKKKNIHRDLKSAFKG--VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQ--- 259 (411)
Q Consensus 187 ~~~~~~dgvR--VrVGNLPkk~ni~kDL~~aFk~--vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIE--- 259 (411)
+..+++.--| |-|.-+|..+- ..++++||++ ++.+|+-.-|..-+ =||||+++.||..+..
T Consensus 166 gekVrp~~kRcIvilREIpettp-~e~Vk~lf~~encPk~iscefa~N~n-----------WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTP-IEVVKALFKGENCPKVISCEFAHNDN-----------WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred ccccccCcceeEEEEeecCCCCh-HHHHHHHhccCCCCCceeeeeeecCc-----------eEEEeecchhHHHHHHHHH
Confidence 4445554444 45678898753 6689999987 78888886554444 4999999999998753
Q ss_pred ----HhCCceecc
Q 015240 260 ----LFSRQIIAF 268 (411)
Q Consensus 260 ----k~NGq~~~f 268 (411)
.|.|+.|+-
T Consensus 234 eevk~fqgKpImA 246 (684)
T KOG2591|consen 234 EEVKTFQGKPIMA 246 (684)
T ss_pred HHHHhhcCcchhh
Confidence 367777764
No 160
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=29.07 E-value=20 Score=34.81 Aligned_cols=13 Identities=31% Similarity=0.143 Sum_probs=7.4
Q ss_pred ccCCCCCCCCCCC
Q 015240 19 TVSPFDSASLLPP 31 (411)
Q Consensus 19 ~~~~~~~~~~~~~ 31 (411)
+.|+.-|+..||-
T Consensus 25 ~~S~~~ssRdLPs 37 (244)
T PF04889_consen 25 VPSKQYSSRDLPS 37 (244)
T ss_pred ccccccccccCCc
Confidence 4455556666663
No 161
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.06 E-value=33 Score=41.48 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCcccccc
Q 015240 288 VDGHSSDDTSGYPKIKVYG 306 (411)
Q Consensus 288 ~~~~s~~s~~~~p~~~v~~ 306 (411)
+...++++++.+-+++|+.
T Consensus 1962 sa~apASa~Agann~qiRq 1980 (3015)
T KOG0943|consen 1962 SALAPASALAGANNIQIRQ 1980 (3015)
T ss_pred cCcCchhhhcccCceeeee
Confidence 3344445555555555443
No 162
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.38 E-value=58 Score=30.95 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.2
Q ss_pred EEEeecCHHHHHHHHHHhCC
Q 015240 244 AFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 244 AFVtf~seedA~rfIEk~NG 263 (411)
|||||++..+|..+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999994433
No 163
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=25.83 E-value=35 Score=42.31 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=10.8
Q ss_pred ccCCCCCccceecccccc
Q 015240 36 LALPNPLYPFISKNAMFV 53 (411)
Q Consensus 36 ~~~~~pl~pf~~~n~~f~ 53 (411)
+..-|---||.---++|-
T Consensus 89 ~~~~~~~~~~~~~~~~~~ 106 (2849)
T PTZ00415 89 VKIKQRTCPFHKEGSSFE 106 (2849)
T ss_pred cceecccCcccccccccc
Confidence 344566677776666653
No 164
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=24.89 E-value=1e+02 Score=26.23 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCchHHHHHHHhccC----CCeeEEeeccccCCCCCCCcccceEEEeecC
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGV----PGIINIIPVVSGNKKTKDPICKGFAFVDFES 250 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~v----GgvisIkpav~~nrKTgDp~CKGFAFVtf~s 250 (411)
-|||||++.. ++.-|.+..... |+++=+. ..+ .+-||+|-|+.+
T Consensus 27 GVyVg~~s~r--VRe~lW~~v~~~~~~~G~avm~~---~~~------~e~G~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSAS--VRERIWDYLAQHCPPKGSLVITW---SSN------TCPGFEFFTLGE 74 (87)
T ss_pred CcEEcCCCHH--HHHHHHHHHHHhCCCCccEEEEE---eCC------CCCCcEEEecCC
Confidence 4899999995 666666655443 6666665 222 346899999865
No 165
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=41 Score=33.88 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=30.7
Q ss_pred cccccchHHHHHHh-hc-----CCCCccccceecchHHHHHHHHHHh
Q 015240 117 EGMMISFGKMRRWL-EN-----KPRGFGEGKVYDTSIEDKLLQEIQQ 157 (411)
Q Consensus 117 E~~~~~~~~M~~wl-~n-----KPrGFG~gK~YdT~iEeKlLeEM~~ 157 (411)
++-|-+|+-..+-+ .. .+|||+++-|++.+.+.+|++.+.+
T Consensus 207 ~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG 253 (270)
T KOG0122|consen 207 EELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG 253 (270)
T ss_pred HHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC
Confidence 55566665544332 21 8999999999999999999988766
No 166
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.01 E-value=38 Score=37.63 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=23.3
Q ss_pred hhhhcccccCCcceecCCCCCCCCCCCCCCcCCCCccccc
Q 015240 79 SAVKNKWIKGGSEVVESDGSDSDDFDDFDEDDADNDEDEG 118 (411)
Q Consensus 79 ~a~~~k~~~g~~~~v~~d~~~~d~~~d~~~~~~~~~~dE~ 118 (411)
|-.-||+.-|....-++|+++.-+++++++++++++++|+
T Consensus 400 ydaikkeiLgn~dsen~d~~~~s~E~~~eee~e~~ee~~e 439 (739)
T KOG2140|consen 400 YDAIKKEILGNEDSENEDDEDGSSEDDDEEEDESVEEDEE 439 (739)
T ss_pred HHHHHHHHhcCCcccccccccccccccccccccccccccc
Confidence 4445566777776644555554455555555665555555
No 167
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=23.56 E-value=1.8e+02 Score=25.21 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=34.0
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
.|..-|-++|+.=.+.+-|+ .... .-|-+.+.|||.| +.+.+.|..|=-+
T Consensus 35 eirekLa~~~~~~~~~vvv~--~~~t-~fG~g~s~G~a~I-Yds~e~~kk~Epk 84 (99)
T PRK01178 35 DVRKKLAAMLNADKELVVVR--KIKT-EYGMGKSKGYAKV-YDDKERARKIEPK 84 (99)
T ss_pred HHHHHHHHHHCcCCCEEEEE--ccCc-cCCCceEEEEEEE-ECCHHHHHhhCch
Confidence 45667888888777777776 3333 3566788888876 6777777665433
No 168
>PLN03120 nucleic acid binding protein; Provisional
Probab=23.52 E-value=38 Score=33.69 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=31.2
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
++|||++-|.+...++.+|. |.+.. .+|.+++.....
T Consensus 42 ~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 42 RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 68999999999999999995 76665 888888887654
No 169
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=22.93 E-value=73 Score=35.68 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHH-HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRD-LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kD-L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~ 265 (411)
...+.++..+|+|||+.-. ...+ +..+.+..|-|.+-+ .+ + |||..|.....+.+++..++-..
T Consensus 33 ~~~~~~~~~~vfv~~~~~~--~s~~~~~~il~~~g~v~s~k--r~----------~-fgf~~f~~~~~~~ra~r~~t~~~ 97 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYL--VSQEFWKSILAKSGFVPSWK--RD----------K-FGFCEFLKHIGDLRASRLLTELN 97 (668)
T ss_pred cccCCCCCceeEecchhhh--hhHHHHHHHHhhCCcchhhh--hh----------h-hcccchhhHHHHHHHHHHhcccC
Confidence 4566679999999999986 3555 667778888877765 11 1 99999999999999999998888
Q ss_pred ecc-ceeeceeeeeeecCCCCCCCCCCCCC
Q 015240 266 IAF-GKVQKQIRCEMVNSSSSNSVDGHSSD 294 (411)
Q Consensus 266 ~~f-gKVEK~ikce~~~~~S~~~~~~~s~~ 294 (411)
+.+ +-|+++-.-.+-|..+..+....++.
T Consensus 98 ~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~ 127 (668)
T KOG2253|consen 98 IDDQKLIENVDEQTIENADKEKSIANKESH 127 (668)
T ss_pred CCcchhhccchhhhhcCccccccchhhhhc
Confidence 766 55566533333344444444344444
No 170
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.69 E-value=51 Score=24.94 Aligned_cols=10 Identities=50% Similarity=0.777 Sum_probs=8.4
Q ss_pred cceEEEeecC
Q 015240 241 KGFAFVDFES 250 (411)
Q Consensus 241 KGFAFVtf~s 250 (411)
+|||||...+
T Consensus 8 ~GfGFv~~~~ 17 (58)
T PF08206_consen 8 KGFGFVIPDD 17 (58)
T ss_dssp SS-EEEEECT
T ss_pred CCCEEEEECC
Confidence 8999999987
No 171
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=22.31 E-value=43 Score=38.32 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=5.6
Q ss_pred CCCCCCCcccc
Q 015240 25 SASLLPPKKLN 35 (411)
Q Consensus 25 ~~~~~~~~~~~ 35 (411)
|+.|+.-.+|+
T Consensus 824 sttlISK~kL~ 834 (911)
T PF05086_consen 824 STTLISKNKLN 834 (911)
T ss_pred eEEEEehhhhh
Confidence 44555555554
No 172
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=21.02 E-value=28 Score=40.03 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=54.5
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..-+|++|||+.+.. +.+|+-+|...|-|-.|.+..-. .+|+ --||||.|-+-..|-++-.-+.|+.|.-|
T Consensus 371 atrTLf~Gnl~~kl~-eseiR~af~e~gkve~VDiKtP~-~~~e----sa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLT-ESEIRPAFDESGKVEEVDIKTPH-IKTE----SAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchh-hhhhhhhhhhhccccccccccCC-CCcc----cchhhhhhhccccCcccchhhcCCccccC
Confidence 345899999999842 77999999999998888644433 3454 66889999888888887777888877654
No 173
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=20.56 E-value=68 Score=35.23 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=15.3
Q ss_pred CCCCccceecccccccCchhh
Q 015240 39 PNPLYPFISKNAMFVSSPQQT 59 (411)
Q Consensus 39 ~~pl~pf~~~n~~f~ss~~~~ 59 (411)
+.|..||+-----|+|.-++-
T Consensus 111 ~h~Vrp~~Cl~gefvseallv 131 (615)
T KOG3540|consen 111 LHPVRPYRCLAGEFVSEALLV 131 (615)
T ss_pred CcccccceeecCcchhhhccC
Confidence 367778887777788776654
Done!