Query 015240
Match_columns 411
No_of_seqs 60 out of 62
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 09:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kn4_A Immunoglobulin G-bindin 99.8 5.2E-19 1.8E-23 144.9 11.1 143 133-287 11-154 (158)
2 3md3_A Nuclear and cytoplasmic 99.8 2.9E-18 1E-22 136.3 10.4 126 132-280 38-164 (166)
3 2yh0_A Splicing factor U2AF 65 99.7 8.8E-18 3E-22 138.4 11.3 143 132-284 48-195 (198)
4 1b7f_A Protein (SXL-lethal pro 99.7 1.2E-17 3.9E-22 134.0 10.0 124 133-279 43-167 (168)
5 2g4b_A Splicing factor U2AF 65 99.7 1.2E-17 4.1E-22 134.8 8.5 121 133-279 49-170 (172)
6 2i2y_A Fusion protein consists 99.7 1.2E-17 4E-22 137.0 8.4 136 133-283 11-148 (150)
7 1fje_B Nucleolin RBD12, protei 99.7 2.2E-17 7.6E-22 134.4 9.7 124 132-284 51-175 (175)
8 1fxl_A Paraneoplastic encephal 99.7 2E-17 6.7E-22 131.6 8.5 117 132-269 41-158 (167)
9 2qfj_A FBP-interacting repress 99.7 6E-18 2.1E-22 141.1 5.3 138 132-283 67-205 (216)
10 4fxv_A ELAV-like protein 1; RN 99.7 4.1E-17 1.4E-21 128.2 9.7 84 189-281 14-97 (99)
11 3nmr_A Cugbp ELAV-like family 99.7 3.8E-17 1.3E-21 131.3 8.6 127 133-281 45-175 (175)
12 1l3k_A Heterogeneous nuclear r 99.7 3E-17 1E-21 135.0 7.0 133 133-285 53-185 (196)
13 2ghp_A U4/U6 snRNA-associated 99.7 1.6E-16 5.6E-21 140.1 9.6 133 132-283 156-291 (292)
14 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2E-16 6.7E-21 132.6 9.6 89 188-285 66-154 (165)
15 2dgo_A Cytotoxic granule-assoc 99.7 9.8E-16 3.4E-20 119.9 12.7 94 190-292 11-104 (115)
16 2div_A TRNA selenocysteine ass 99.7 4.3E-16 1.5E-20 118.8 10.2 91 190-285 5-96 (99)
17 2dnz_A Probable RNA-binding pr 99.7 1E-15 3.5E-20 115.6 12.1 89 191-288 2-90 (95)
18 2cjk_A Nuclear polyadenylated 99.7 4.2E-17 1.4E-21 131.0 4.8 124 132-282 42-165 (167)
19 4f02_A Polyadenylate-binding p 99.7 6.3E-17 2.1E-21 139.1 6.1 126 132-282 54-180 (213)
20 2dnm_A SRP46 splicing factor; 99.7 1E-15 3.4E-20 117.8 12.0 90 190-288 9-98 (103)
21 1whw_A Hypothetical protein ri 99.7 1.5E-15 5.2E-20 115.7 12.6 88 190-286 4-91 (99)
22 3p5t_L Cleavage and polyadenyl 99.6 1.6E-16 5.5E-21 120.6 6.4 84 195-287 2-87 (90)
23 1x5s_A Cold-inducible RNA-bind 99.6 1.1E-15 3.8E-20 117.1 10.9 91 189-288 7-97 (102)
24 3s8s_A Histone-lysine N-methyl 99.6 6.9E-16 2.4E-20 123.8 10.1 82 192-282 4-85 (110)
25 3bs9_A Nucleolysin TIA-1 isofo 99.6 6.8E-16 2.3E-20 114.5 9.3 84 191-283 3-86 (87)
26 2cpz_A CUG triplet repeat RNA- 99.6 1.7E-15 5.9E-20 118.9 11.9 91 189-288 20-110 (115)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.7E-15 5.8E-20 116.0 11.3 90 190-288 8-97 (102)
28 2dgs_A DAZ-associated protein 99.6 2.8E-15 9.5E-20 114.6 12.3 88 191-288 7-94 (99)
29 3smz_A Protein raver-1, ribonu 99.6 6.3E-16 2.2E-20 135.9 9.8 129 132-283 134-264 (284)
30 2cq0_A Eukaryotic translation 99.6 1.5E-15 5.1E-20 116.9 10.6 90 190-288 11-100 (103)
31 1x5t_A Splicing factor 3B subu 99.6 1.4E-15 4.8E-20 115.0 10.3 87 191-286 2-89 (96)
32 2dgp_A Bruno-like 4, RNA bindi 99.6 2.3E-15 8E-20 116.0 11.5 93 189-287 8-100 (106)
33 3smz_A Protein raver-1, ribonu 99.6 1.1E-15 3.9E-20 134.3 11.0 122 132-284 54-176 (284)
34 2cph_A RNA binding motif prote 99.6 4.2E-15 1.5E-19 114.3 12.6 90 190-288 11-102 (107)
35 1x5u_A Splicing factor 3B subu 99.6 4.6E-15 1.6E-19 114.1 12.7 88 190-286 11-98 (105)
36 2khc_A Testis-specific RNP-typ 99.6 2.7E-15 9.3E-20 117.9 11.5 82 189-279 35-116 (118)
37 2cpe_A RNA-binding protein EWS 99.6 3E-15 1E-19 116.8 11.6 88 191-287 12-107 (113)
38 2dgv_A HnRNP M, heterogeneous 99.6 3E-15 1E-19 112.4 11.1 88 188-286 2-89 (92)
39 1x4h_A RNA-binding protein 28; 99.6 6E-15 2.1E-19 114.1 12.8 91 188-287 9-105 (111)
40 2lxi_A RNA-binding protein 10; 99.6 8.4E-16 2.9E-20 118.5 7.8 83 194-285 1-85 (91)
41 2cqc_A Arginine/serine-rich sp 99.6 3E-15 1E-19 112.6 10.6 85 189-282 10-94 (95)
42 3md1_A Nuclear and cytoplasmic 99.6 2.7E-15 9.2E-20 110.4 10.1 81 194-283 1-81 (83)
43 2cpf_A RNA binding motif prote 99.6 1.9E-15 6.5E-20 115.0 9.5 91 191-288 2-93 (98)
44 1p27_B RNA-binding protein 8A; 99.6 1.7E-15 5.7E-20 116.8 9.2 86 189-283 18-103 (106)
45 2e5h_A Zinc finger CCHC-type a 99.6 3.7E-15 1.3E-19 112.3 10.7 83 189-280 11-93 (94)
46 3sde_A Paraspeckle component 1 99.6 1.1E-15 3.6E-20 135.5 8.6 124 132-283 55-179 (261)
47 2dng_A Eukaryotic translation 99.6 6.1E-15 2.1E-19 113.8 11.8 88 189-287 10-97 (103)
48 2do4_A Squamous cell carcinoma 99.6 5.8E-15 2E-19 113.0 11.5 87 189-285 12-98 (100)
49 1oo0_B CG8781-PA, drosophila Y 99.6 2.9E-15 1E-19 116.4 9.9 88 187-283 19-106 (110)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.1E-15 1.1E-19 110.5 9.5 81 191-280 4-84 (85)
51 2dnh_A Bruno-like 5, RNA bindi 99.6 7.5E-15 2.6E-19 112.9 12.0 90 190-286 11-100 (105)
52 2la6_A RNA-binding protein FUS 99.6 3.3E-15 1.1E-19 114.5 10.0 82 190-280 9-98 (99)
53 2x1f_A MRNA 3'-END-processing 99.6 4.7E-15 1.6E-19 113.1 10.5 83 194-285 2-84 (96)
54 2kt5_A RNA and export factor-b 99.6 1.2E-14 4.2E-19 115.7 13.3 89 190-288 31-119 (124)
55 3tyt_A Heterogeneous nuclear r 99.6 2.9E-15 9.9E-20 131.0 10.4 128 134-268 41-192 (205)
56 3pgw_A U1-A; protein-RNA compl 99.6 4.8E-15 1.7E-19 130.2 11.8 76 192-280 205-280 (282)
57 2dgx_A KIAA0430 protein; RRM d 99.6 5.2E-15 1.8E-19 113.8 10.3 87 189-287 4-94 (96)
58 3ex7_B RNA-binding protein 8A; 99.6 5E-15 1.7E-19 117.6 10.3 90 188-286 16-105 (126)
59 1x5o_A RNA binding motif, sing 99.6 8.3E-15 2.8E-19 114.5 11.4 89 189-283 20-112 (114)
60 1qm9_A Polypyrimidine tract-bi 99.6 8.3E-15 2.8E-19 122.2 12.0 134 134-281 40-195 (198)
61 2dh8_A DAZ-associated protein 99.6 6.4E-15 2.2E-19 113.7 10.5 89 190-288 12-100 (105)
62 3ns6_A Eukaryotic translation 99.6 2E-15 6.9E-20 117.5 7.6 81 193-281 5-91 (100)
63 3ulh_A THO complex subunit 4; 99.6 5.7E-15 1.9E-19 114.0 10.1 85 187-281 22-106 (107)
64 1x4e_A RNA binding motif, sing 99.6 2.2E-15 7.7E-20 112.0 7.4 73 191-268 2-74 (85)
65 2cpx_A Hypothetical protein FL 99.6 8.8E-15 3E-19 114.2 11.1 88 188-288 19-110 (115)
66 2cqd_A RNA-binding region cont 99.6 1.4E-14 4.9E-19 113.8 12.3 89 188-286 11-99 (116)
67 1wi8_A EIF-4B, eukaryotic tran 99.6 1.4E-14 4.8E-19 111.9 12.1 86 190-286 11-97 (104)
68 2cqp_A RNA-binding protein 12; 99.6 3.7E-15 1.3E-19 113.4 8.6 85 192-285 13-97 (98)
69 2dhg_A TRNA selenocysteine ass 99.6 9.4E-15 3.2E-19 112.2 10.9 85 191-285 6-92 (104)
70 2fy1_A RNA-binding motif prote 99.6 1.3E-14 4.6E-19 116.1 12.3 88 191-288 4-91 (116)
71 2cq3_A RNA-binding protein 9; 99.6 1.9E-14 6.6E-19 110.6 12.3 89 189-288 10-98 (103)
72 2d9p_A Polyadenylate-binding p 99.6 1.7E-14 5.8E-19 110.9 11.8 89 189-288 10-98 (103)
73 2jrs_A RNA-binding protein 39; 99.6 6.2E-15 2.1E-19 116.8 9.5 86 190-284 22-107 (108)
74 4a8x_A RNA-binding protein wit 99.6 7.7E-15 2.6E-19 108.7 9.3 83 192-282 2-84 (88)
75 2adc_A Polypyrimidine tract-bi 99.6 1.3E-14 4.6E-19 125.9 12.4 135 134-282 71-227 (229)
76 2m2b_A RNA-binding protein 10; 99.6 8.3E-15 2.8E-19 118.6 10.2 85 191-285 20-110 (131)
77 1u6f_A Tcubp1, RNA-binding pro 99.6 2.4E-14 8.2E-19 115.4 12.7 87 192-287 40-126 (139)
78 2dis_A Unnamed protein product 99.6 1.4E-14 4.6E-19 112.2 10.8 89 190-287 4-96 (109)
79 2do0_A HnRNP M, heterogeneous 99.6 3.3E-14 1.1E-18 110.8 12.9 85 189-283 10-94 (114)
80 3ucg_A Polyadenylate-binding p 99.6 9.8E-15 3.3E-19 108.7 9.1 81 193-283 5-85 (89)
81 4f25_A Polyadenylate-binding p 99.6 6.6E-15 2.3E-19 117.1 8.6 80 194-284 5-84 (115)
82 2mss_A Protein (musashi1); RNA 99.6 5.6E-15 1.9E-19 107.6 7.5 67 196-268 1-67 (75)
83 2dnq_A RNA-binding protein 4B; 99.6 2E-14 6.7E-19 108.5 10.7 83 189-288 3-85 (90)
84 2lkz_A RNA-binding protein 5; 99.6 8.2E-15 2.8E-19 116.0 9.0 84 191-282 6-94 (95)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.6E-14 9E-19 113.9 11.7 76 188-268 57-132 (140)
86 3q2s_C Cleavage and polyadenyl 99.6 4E-15 1.4E-19 133.0 7.7 80 193-281 67-148 (229)
87 1p1t_A Cleavage stimulation fa 99.6 7.6E-15 2.6E-19 112.4 8.0 83 193-284 7-89 (104)
88 2nlw_A Eukaryotic translation 99.6 2E-14 6.8E-19 112.5 10.5 82 192-283 13-100 (105)
89 2ek1_A RNA-binding protein 12; 99.6 5.3E-15 1.8E-19 111.6 6.9 81 192-281 13-93 (95)
90 3s7r_A Heterogeneous nuclear r 99.6 1.4E-14 4.9E-19 108.1 9.0 72 191-268 8-79 (87)
91 1x4b_A Heterogeneous nuclear r 99.6 1.8E-14 6.3E-19 113.2 10.1 87 191-287 24-110 (116)
92 2cqi_A Nucleolysin TIAR; RNA r 99.6 3.3E-14 1.1E-18 109.4 11.2 86 190-286 11-96 (103)
93 3n9u_C Cleavage and polyadenyl 99.5 9.7E-15 3.3E-19 124.0 8.7 81 192-281 53-135 (156)
94 2krb_A Eukaryotic translation 99.5 1E-14 3.5E-19 108.5 7.7 69 194-268 1-74 (81)
95 2hvz_A Splicing factor, argini 99.5 2E-14 6.7E-19 110.2 9.4 99 196-308 2-100 (101)
96 1x4a_A Splicing factor, argini 99.5 7.2E-14 2.5E-18 108.7 12.6 86 190-287 18-103 (109)
97 2ki2_A SS-DNA binding protein 99.5 3.5E-15 1.2E-19 111.9 5.0 82 196-287 3-84 (90)
98 2cpi_A CCR4-NOT transcription 99.5 2.5E-14 8.6E-19 112.9 10.1 89 191-286 12-104 (111)
99 2kxn_B Transformer-2 protein h 99.5 2.5E-14 8.5E-19 117.3 9.9 85 190-283 42-126 (129)
100 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.8E-14 6.3E-19 111.5 8.5 83 190-283 15-98 (100)
101 1h2v_Z 20 kDa nuclear CAP bind 99.5 3.8E-14 1.3E-18 116.9 10.9 88 189-285 34-121 (156)
102 2ywk_A Putative RNA-binding pr 99.5 3.1E-14 1.1E-18 107.4 9.2 82 190-281 12-93 (95)
103 1x4c_A Splicing factor, argini 99.5 9.5E-14 3.3E-18 108.8 12.1 88 189-288 10-98 (108)
104 2cqg_A TDP-43, TAR DNA-binding 99.5 9.3E-14 3.2E-18 106.8 11.8 85 191-286 12-96 (103)
105 1wg5_A Heterogeneous nuclear r 99.5 7E-14 2.4E-18 109.2 11.0 80 191-281 12-92 (104)
106 2dgt_A RNA-binding protein 30; 99.5 7.9E-14 2.7E-18 105.6 10.9 82 190-288 6-87 (92)
107 2dgw_A Probable RNA-binding pr 99.5 6.1E-14 2.1E-18 105.7 10.3 82 191-284 7-88 (91)
108 2fc8_A NCL protein; structure 99.5 5.5E-14 1.9E-18 107.6 10.2 85 190-286 11-95 (102)
109 2fc9_A NCL protein; structure 99.5 8.9E-14 3E-18 106.6 11.3 85 189-286 10-94 (101)
110 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.6E-14 5.5E-19 105.0 6.6 67 196-268 2-68 (77)
111 2cpd_A Apobec-1 stimulating pr 99.5 1.3E-13 4.6E-18 105.6 12.0 81 189-286 10-92 (99)
112 2cq4_A RNA binding motif prote 99.5 4E-14 1.4E-18 111.0 9.3 80 192-281 23-102 (114)
113 1wel_A RNA-binding protein 12; 99.5 2.9E-14 9.9E-19 114.2 8.4 74 189-268 20-93 (124)
114 2jwn_A Embryonic polyadenylate 99.5 4.4E-14 1.5E-18 111.9 9.3 83 193-285 35-117 (124)
115 2cpj_A Non-POU domain-containi 99.5 9.7E-14 3.3E-18 106.4 10.7 86 190-290 11-96 (99)
116 2dgu_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 106.8 11.2 82 191-289 8-89 (103)
117 1iqt_A AUF1, heterogeneous nuc 99.5 1.7E-14 5.8E-19 104.7 5.7 67 196-268 1-67 (75)
118 2lea_A Serine/arginine-rich sp 99.5 3.6E-14 1.2E-18 116.9 8.4 86 192-286 45-130 (135)
119 1fj7_A Nucleolin RBD1, protein 99.5 9.3E-15 3.2E-19 112.1 4.5 82 192-284 15-96 (101)
120 2rs2_A Musashi-1, RNA-binding 99.5 7.9E-14 2.7E-18 110.3 9.9 85 190-284 21-105 (109)
121 1nu4_A U1A RNA binding domain; 99.5 3.9E-14 1.3E-18 107.2 7.7 83 191-285 5-91 (97)
122 2kvi_A Nuclear polyadenylated 99.5 6.1E-14 2.1E-18 107.5 8.8 81 190-287 6-87 (96)
123 2cpy_A RNA-binding protein 12; 99.5 5E-14 1.7E-18 111.6 8.4 81 190-281 11-92 (114)
124 2dnp_A RNA-binding protein 14; 99.5 1E-13 3.6E-18 104.5 9.8 79 190-285 5-83 (90)
125 1b7f_A Protein (SXL-lethal pro 99.5 1E-13 3.5E-18 111.1 10.2 82 193-283 2-83 (168)
126 1fjc_A Nucleolin RBD2, protein 99.5 4.2E-14 1.4E-18 107.2 7.5 81 191-285 13-93 (96)
127 1wez_A HnRNP H', FTP-3, hetero 99.5 8.8E-14 3E-18 109.7 9.6 80 191-282 12-91 (102)
128 2err_A Ataxin-2-binding protei 99.5 9.9E-14 3.4E-18 109.5 9.9 83 189-282 24-106 (109)
129 1fxl_A Paraneoplastic encephal 99.5 1E-13 3.6E-18 110.2 9.7 80 194-282 2-81 (167)
130 1wex_A Hypothetical protein (r 99.5 2.1E-13 7.1E-18 109.5 11.4 87 189-288 10-96 (104)
131 1s79_A Lupus LA protein; RRM, 99.5 7.7E-14 2.6E-18 111.0 8.6 70 192-268 9-78 (103)
132 2a3j_A U1 small nuclear ribonu 99.5 1.1E-13 3.7E-18 115.0 9.8 83 191-285 26-112 (127)
133 2dnl_A Cytoplasmic polyadenyla 99.5 3.5E-13 1.2E-17 106.8 12.2 73 191-267 5-81 (114)
134 1why_A Hypothetical protein ri 99.5 2.5E-13 8.6E-18 103.7 11.0 85 187-285 10-95 (97)
135 2ghp_A U4/U6 snRNA-associated 99.5 5.2E-14 1.8E-18 124.2 8.1 117 134-284 80-198 (292)
136 3nmr_A Cugbp ELAV-like family 99.5 8.3E-14 2.8E-18 111.9 8.3 85 192-280 1-85 (175)
137 1x4g_A Nucleolysin TIAR; struc 99.5 1.9E-13 6.5E-18 106.7 10.1 84 190-288 21-104 (109)
138 2jvr_A Nucleolar protein 3; RN 99.5 8.9E-14 3E-18 113.5 8.4 79 191-282 25-104 (111)
139 1wf1_A RNA-binding protein RAL 99.5 5.8E-13 2E-17 104.1 12.4 80 190-286 23-103 (110)
140 1x4d_A Matrin 3; structural ge 99.5 1.3E-13 4.6E-18 111.4 8.9 80 192-284 13-93 (102)
141 2xnq_A Nuclear polyadenylated 99.5 2.3E-13 7.9E-18 105.7 9.8 78 189-283 17-95 (97)
142 3egn_A RNA-binding protein 40; 99.5 4.4E-14 1.5E-18 114.9 5.8 86 191-283 42-130 (143)
143 2lcw_A RNA-binding protein FUS 99.2 4.9E-15 1.7E-19 116.8 0.0 88 191-287 4-99 (116)
144 2cq1_A PTB-like protein L; RRM 99.5 3.2E-13 1.1E-17 108.1 10.4 82 191-287 12-95 (101)
145 2db1_A Heterogeneous nuclear r 99.5 1.3E-13 4.3E-18 110.8 8.0 71 191-268 14-87 (118)
146 2la4_A Nuclear and cytoplasmic 99.5 2.6E-13 8.8E-18 104.0 9.4 76 191-281 24-99 (101)
147 1sjq_A Polypyrimidine tract-bi 99.5 1.8E-13 6.3E-18 112.3 9.0 82 192-288 14-97 (105)
148 4f02_A Polyadenylate-binding p 99.5 2.4E-13 8.3E-18 116.8 9.8 80 192-280 13-92 (213)
149 2lmi_A GRSF-1, G-rich sequence 99.4 1.4E-13 4.7E-18 108.0 7.6 73 189-268 6-81 (107)
150 3r27_A HnRNP L, heterogeneous 99.4 2.9E-13 9.9E-18 110.5 9.4 82 189-283 16-97 (100)
151 3lqv_A PRE-mRNA branch site pr 99.4 4E-13 1.4E-17 105.1 9.8 79 192-282 6-84 (115)
152 2cqh_A IGF-II mRNA-binding pro 99.4 3.5E-13 1.2E-17 101.9 9.2 79 191-285 5-85 (93)
153 2xs2_A Deleted in azoospermia- 99.4 6.9E-14 2.4E-18 107.4 5.3 77 192-276 7-85 (102)
154 1wg1_A KIAA1579 protein, homol 99.4 5.2E-13 1.8E-17 100.9 9.9 76 193-284 4-79 (88)
155 1whx_A Hypothetical protein ri 99.4 5.6E-13 1.9E-17 106.0 10.1 77 193-284 9-85 (111)
156 2e5g_A U6 snRNA-specific termi 99.4 1E-12 3.5E-17 100.1 10.9 75 192-281 6-80 (94)
157 2ad9_A Polypyrimidine tract-bi 99.4 5.1E-13 1.7E-17 111.4 9.9 84 190-286 27-110 (119)
158 3md3_A Nuclear and cytoplasmic 99.4 5.1E-13 1.8E-17 106.1 9.5 79 196-284 2-80 (166)
159 1x4f_A Matrin 3; structural ge 99.4 7.8E-13 2.7E-17 109.3 10.8 85 191-288 22-107 (112)
160 2qfj_A FBP-interacting repress 99.4 4.3E-13 1.5E-17 111.8 9.1 72 192-268 26-97 (216)
161 1l3k_A Heterogeneous nuclear r 99.4 5.7E-13 2E-17 109.5 9.7 82 191-282 10-91 (196)
162 2jvo_A Nucleolar protein 3; nu 99.4 6.3E-13 2.2E-17 105.5 9.6 79 189-284 26-104 (108)
163 2f3j_A RNA and export factor b 99.4 4.6E-13 1.6E-17 115.5 9.3 83 191-283 85-167 (177)
164 2e5j_A Methenyltetrahydrofolat 99.4 1.3E-12 4.5E-17 100.0 10.6 80 191-284 16-95 (97)
165 2ytc_A PRE-mRNA-splicing facto 99.4 9.3E-13 3.2E-17 97.5 9.1 67 191-268 9-76 (85)
166 2hgl_A HNRPF protein, heteroge 99.4 4.4E-13 1.5E-17 112.7 7.9 80 190-280 40-122 (136)
167 1x5p_A Negative elongation fac 99.4 3.2E-12 1.1E-16 97.8 11.9 80 192-288 13-92 (97)
168 2hzc_A Splicing factor U2AF 65 99.4 6.5E-13 2.2E-17 98.4 7.6 70 192-273 4-86 (87)
169 2e5i_A Heterogeneous nuclear r 99.4 4.5E-12 1.5E-16 106.2 13.4 85 193-290 24-109 (124)
170 2dnn_A RNA-binding protein 12; 99.4 7.6E-13 2.6E-17 107.2 8.4 71 190-268 12-82 (109)
171 2cjk_A Nuclear polyadenylated 99.4 8E-13 2.7E-17 106.1 8.0 68 193-267 2-69 (167)
172 2diu_A KIAA0430 protein; struc 99.4 2.3E-12 7.9E-17 106.7 10.9 82 190-289 4-90 (96)
173 3zzy_A Polypyrimidine tract-bi 99.4 2.4E-12 8.3E-17 109.5 10.7 98 192-301 26-124 (130)
174 3pgw_S U1-70K; protein-RNA com 99.4 1.1E-12 3.9E-17 127.8 9.9 84 192-284 100-183 (437)
175 3beg_B Splicing factor, argini 99.4 1.5E-12 5.3E-17 103.8 8.7 66 191-268 13-78 (115)
176 3tyt_A Heterogeneous nuclear r 99.4 2E-12 7E-17 113.0 10.1 79 192-284 2-81 (205)
177 2hgn_A Heterogeneous nuclear r 99.4 8.4E-13 2.9E-17 111.6 6.7 80 191-282 43-122 (139)
178 1wf0_A TDP-43, TAR DNA-binding 99.4 3.8E-12 1.3E-16 95.6 9.5 78 192-285 3-80 (88)
179 3d2w_A TAR DNA-binding protein 99.4 2.9E-12 9.9E-17 98.6 9.0 77 190-282 7-83 (89)
180 2dha_A FLJ20171 protein; RRM d 99.3 1.3E-12 4.6E-17 108.2 6.8 71 191-268 20-94 (123)
181 2hgm_A HNRPF protein, heteroge 99.3 2.9E-12 1E-16 107.1 8.9 69 192-268 40-110 (126)
182 1sjr_A Polypyrimidine tract-bi 99.3 6.4E-12 2.2E-16 110.9 9.9 87 193-290 45-131 (164)
183 3pgw_A U1-A; protein-RNA compl 99.3 1.1E-11 3.8E-16 108.9 10.7 82 191-284 6-91 (282)
184 2e44_A Insulin-like growth fac 99.3 7.4E-12 2.5E-16 94.8 7.8 80 192-283 13-92 (96)
185 2cq2_A Hypothetical protein LO 99.3 1E-11 3.5E-16 103.4 9.2 85 192-288 23-111 (114)
186 1fje_B Nucleolin RBD12, protei 99.3 2.3E-12 7.8E-17 104.9 4.8 83 190-283 9-91 (175)
187 2bz2_A Negative elongation fac 99.3 1.4E-11 4.8E-16 100.2 9.2 79 192-287 37-115 (121)
188 2adc_A Polypyrimidine tract-bi 99.3 2.1E-11 7.1E-16 105.9 10.1 81 191-285 31-112 (229)
189 1qm9_A Polypyrimidine tract-bi 99.2 2.3E-11 8E-16 101.3 9.6 78 193-284 2-80 (198)
190 2wbr_A GW182, gawky, LD47780P; 99.2 1.5E-11 5E-16 100.3 8.1 74 192-280 5-78 (89)
191 2dit_A HIV TAT specific factor 99.2 9.1E-11 3.1E-15 92.9 12.0 87 190-288 11-107 (112)
192 2pe8_A Splicing factor 45; RRM 99.2 5.9E-11 2E-15 95.4 9.3 84 191-281 5-92 (105)
193 2g4b_A Splicing factor U2AF 65 99.2 5.9E-11 2E-15 95.6 7.6 72 193-280 3-85 (172)
194 2yh0_A Splicing factor U2AF 65 99.1 1E-10 3.4E-15 96.3 8.7 83 193-283 3-88 (198)
195 3sde_A Paraspeckle component 1 99.1 1.2E-10 4E-15 103.2 9.6 78 189-281 17-94 (261)
196 3v4m_A Splicing factor U2AF 65 99.1 1.7E-10 5.9E-15 92.4 9.5 83 193-281 4-95 (105)
197 2voo_A Lupus LA protein; RNA-b 99.1 1.3E-10 4.5E-15 101.2 8.5 69 193-268 108-176 (193)
198 3u1l_A PRE-mRNA-splicing facto 99.1 1.3E-10 4.5E-15 107.3 8.7 82 192-283 132-229 (240)
199 2j8a_A Histone-lysine N-methyl 99.1 8.2E-11 2.8E-15 102.8 6.6 69 195-268 3-85 (136)
200 3ue2_A Poly(U)-binding-splicin 99.0 1.4E-09 4.8E-14 89.7 9.1 85 193-281 19-107 (118)
201 3tht_A Alkylated DNA repair pr 99.0 6.7E-10 2.3E-14 107.2 7.9 67 190-267 14-82 (345)
202 2d9o_A DNAJ (HSP40) homolog, s 98.9 9.1E-09 3.1E-13 82.9 10.4 80 194-288 10-95 (100)
203 1jmt_A Splicing factor U2AF 35 98.8 8.9E-09 3E-13 82.2 7.6 60 211-279 42-102 (104)
204 3s6e_A RNA-binding protein 39; 98.7 3.4E-08 1.2E-12 81.2 7.3 76 194-281 7-91 (114)
205 1owx_A Lupus LA protein, SS-B, 98.4 1.6E-06 5.4E-11 73.4 9.6 79 187-280 11-93 (121)
206 3dxb_A Thioredoxin N-terminall 98.3 1E-06 3.6E-11 76.0 8.0 68 208-281 142-211 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.1 3.4E-06 1.2E-10 69.3 6.2 65 191-268 4-75 (91)
208 1ufw_A Synaptojanin 2; RNP dom 97.8 2.7E-05 9.2E-10 64.6 5.6 67 189-268 10-84 (95)
209 4f25_A Polyadenylate-binding p 97.7 4.7E-06 1.6E-10 66.1 -0.5 67 132-206 42-109 (115)
210 2hvz_A Splicing factor, argini 97.0 0.00024 8.2E-09 54.1 2.3 64 134-203 36-100 (101)
211 1uw4_A UPF3X; nonsense mediate 96.0 0.028 9.4E-07 45.7 8.1 70 196-268 3-72 (91)
212 2kn4_A Immunoglobulin G-bindin 95.5 0.0092 3.1E-07 48.5 3.4 31 239-269 11-41 (158)
213 2dhx_A Poly (ADP-ribose) polym 94.7 0.12 4.2E-06 43.5 8.1 65 190-267 4-77 (104)
214 3p5t_L Cleavage and polyadenyl 94.5 0.0046 1.6E-07 46.4 -0.9 44 132-175 42-86 (90)
215 2lkz_A RNA-binding protein 5; 94.1 0.014 4.6E-07 45.9 1.0 40 132-171 50-94 (95)
216 3lqv_A PRE-mRNA branch site pr 93.9 0.0052 1.8E-07 47.7 -1.6 65 132-221 44-109 (115)
217 2cpi_A CCR4-NOT transcription 93.6 0.015 5.2E-07 45.4 0.6 42 133-174 61-103 (111)
218 2l08_A Regulator of nonsense t 93.6 0.17 5.7E-06 42.0 6.7 73 193-268 8-80 (97)
219 2lxi_A RNA-binding protein 10; 93.6 0.013 4.6E-07 44.6 0.1 42 132-173 41-84 (91)
220 3bs9_A Nucleolysin TIA-1 isofo 93.2 0.012 4.2E-07 43.0 -0.6 42 132-173 45-87 (87)
221 1x5p_A Negative elongation fac 93.2 0.04 1.4E-06 41.6 2.2 42 133-174 47-89 (97)
222 1whw_A Hypothetical protein ri 92.8 0.03 1E-06 42.1 1.0 43 132-174 47-90 (99)
223 1fj7_A Nucleolin RBD1, protein 92.7 0.033 1.1E-06 42.2 1.2 41 132-173 55-96 (101)
224 2dgo_A Cytotoxic granule-assoc 92.4 0.043 1.5E-06 42.4 1.5 48 132-179 54-102 (115)
225 4fxv_A ELAV-like protein 1; RN 92.3 0.021 7.1E-07 44.4 -0.4 39 132-170 58-97 (99)
226 2jvr_A Nucleolar protein 3; RN 92.3 0.026 8.8E-07 45.8 0.1 42 133-174 65-107 (111)
227 3egn_A RNA-binding protein 40; 92.3 0.028 9.5E-07 45.4 0.3 43 132-174 89-132 (143)
228 2err_A Ataxin-2-binding protei 92.2 0.042 1.4E-06 42.9 1.2 41 133-173 67-108 (109)
229 1p27_B RNA-binding protein 8A; 92.2 0.024 8.3E-07 43.1 -0.2 43 132-174 62-105 (106)
230 2cqb_A Peptidyl-prolyl CIS-tra 92.2 0.052 1.8E-06 41.0 1.6 43 132-174 51-94 (102)
231 3md1_A Nuclear and cytoplasmic 91.9 0.026 8.9E-07 40.9 -0.3 41 132-172 40-81 (83)
232 3s8s_A Histone-lysine N-methyl 91.9 0.025 8.6E-07 45.0 -0.5 39 132-170 45-84 (110)
233 1x5s_A Cold-inducible RNA-bind 91.8 0.064 2.2E-06 40.5 1.8 42 133-174 52-94 (102)
234 1jmt_A Splicing factor U2AF 35 91.8 0.03 1E-06 44.4 -0.1 36 133-168 66-102 (104)
235 2cq3_A RNA-binding protein 9; 91.7 0.063 2.1E-06 40.7 1.7 42 133-174 53-95 (103)
236 2cpe_A RNA-binding protein EWS 91.7 0.056 1.9E-06 41.7 1.4 43 132-174 62-105 (113)
237 2x1f_A MRNA 3'-END-processing 91.7 0.045 1.5E-06 41.2 0.8 43 132-174 41-84 (96)
238 2dnz_A Probable RNA-binding pr 91.7 0.066 2.2E-06 39.8 1.7 43 132-174 44-87 (95)
239 2pe8_A Splicing factor 45; RRM 91.6 0.037 1.3E-06 44.1 0.3 38 133-170 54-92 (105)
240 1wg1_A KIAA1579 protein, homol 91.5 0.051 1.8E-06 40.5 0.9 41 133-173 38-79 (88)
241 2m2b_A RNA-binding protein 10; 91.3 0.11 3.8E-06 41.6 2.8 39 132-171 64-107 (131)
242 2j76_E EIF-4B, EIF4B, eukaryot 91.3 0.053 1.8E-06 41.4 0.9 39 132-171 58-97 (100)
243 2e5j_A Methenyltetrahydrofolat 91.2 0.059 2E-06 40.7 1.0 41 132-172 53-94 (97)
244 1x5t_A Splicing factor 3B subu 91.2 0.056 1.9E-06 40.2 0.8 42 132-173 45-87 (96)
245 2dnm_A SRP46 splicing factor; 91.1 0.07 2.4E-06 40.5 1.3 42 132-173 52-94 (103)
246 2dgv_A HnRNP M, heterogeneous 91.1 0.052 1.8E-06 40.1 0.6 43 132-174 45-88 (92)
247 1oo0_B CG8781-PA, drosophila Y 90.9 0.063 2.2E-06 41.2 0.9 43 132-174 65-108 (110)
248 1whv_A Poly(A)-specific ribonu 90.8 0.5 1.7E-05 39.8 6.3 62 187-261 8-69 (100)
249 2fc9_A NCL protein; structure 90.8 0.054 1.9E-06 41.0 0.4 43 132-174 50-93 (101)
250 2dgu_A Heterogeneous nuclear r 90.8 0.25 8.6E-06 37.6 4.2 44 133-176 43-87 (103)
251 2lcw_A RNA-binding protein FUS 90.1 0.046 1.6E-06 42.6 0.0 43 132-174 54-97 (116)
252 2cph_A RNA binding motif prote 90.7 0.1 3.5E-06 39.6 1.9 43 132-174 55-99 (107)
253 2dgx_A KIAA0430 protein; RRM d 90.7 0.074 2.5E-06 40.3 1.1 40 135-174 52-92 (96)
254 2ki2_A SS-DNA binding protein 90.7 0.03 1E-06 41.4 -1.0 42 132-174 40-82 (90)
255 2cpx_A Hypothetical protein FL 90.7 0.071 2.4E-06 41.1 1.0 44 131-174 63-107 (115)
256 1x4e_A RNA binding motif, sing 90.6 0.092 3.1E-06 38.4 1.6 34 132-165 44-78 (85)
257 2dgs_A DAZ-associated protein 90.6 0.095 3.3E-06 39.5 1.7 42 132-174 49-91 (99)
258 2fy1_A RNA-binding motif prote 90.6 0.082 2.8E-06 41.9 1.3 43 132-174 45-88 (116)
259 1x4h_A RNA-binding protein 28; 90.5 0.084 2.9E-06 40.3 1.3 41 133-173 55-102 (111)
260 3s6e_A RNA-binding protein 39; 90.5 0.065 2.2E-06 43.8 0.7 39 131-169 51-90 (114)
261 2a3j_A U1 small nuclear ribonu 90.4 0.062 2.1E-06 44.4 0.5 42 132-173 69-111 (127)
262 1x5u_A Splicing factor 3B subu 90.2 0.072 2.5E-06 40.4 0.7 42 132-173 54-96 (105)
263 2fc8_A NCL protein; structure 90.2 0.061 2.1E-06 40.6 0.3 42 132-173 51-93 (102)
264 3ns6_A Eukaryotic translation 90.1 0.043 1.5E-06 42.2 -0.6 39 132-170 51-91 (100)
265 1wey_A Calcipressin 1; structu 90.0 0.63 2.2E-05 39.1 6.3 73 194-281 5-82 (104)
266 2cqi_A Nucleolysin TIAR; RNA r 89.9 0.11 3.8E-06 39.4 1.5 41 133-173 53-94 (103)
267 2cq0_A Eukaryotic translation 89.9 0.056 1.9E-06 41.0 -0.2 43 132-174 54-97 (103)
268 2cpz_A CUG triplet repeat RNA- 89.8 0.071 2.4E-06 41.3 0.4 43 132-174 64-107 (115)
269 2cqh_A IGF-II mRNA-binding pro 89.8 0.087 3E-06 39.2 0.8 42 133-174 42-85 (93)
270 2cpf_A RNA binding motif prote 89.6 0.049 1.7E-06 40.8 -0.6 42 133-174 48-90 (98)
271 3ex7_B RNA-binding protein 8A; 89.6 0.11 3.6E-06 40.8 1.2 44 132-175 61-105 (126)
272 2do4_A Squamous cell carcinoma 89.4 0.061 2.1E-06 40.6 -0.3 42 132-173 55-97 (100)
273 1wi8_A EIF-4B, eukaryotic tran 89.3 0.1 3.5E-06 39.7 0.9 42 132-174 54-96 (104)
274 2cpj_A Non-POU domain-containi 89.2 0.037 1.3E-06 41.8 -1.6 41 133-173 49-90 (99)
275 2lea_A Serine/arginine-rich sp 89.2 0.083 2.8E-06 43.2 0.4 43 132-174 86-129 (135)
276 2kt5_A RNA and export factor-b 89.2 0.14 4.7E-06 40.3 1.6 43 132-174 73-116 (124)
277 2l9w_A U4/U6 snRNA-associated- 89.1 0.88 3E-05 39.3 6.6 72 194-280 21-97 (117)
278 2dgp_A Bruno-like 4, RNA bindi 89.1 0.17 5.7E-06 38.4 2.0 40 132-171 52-95 (106)
279 2kxn_B Transformer-2 protein h 89.0 0.12 4.2E-06 42.0 1.2 40 133-172 86-126 (129)
280 3v4m_A Splicing factor U2AF 65 89.0 0.096 3.3E-06 41.6 0.6 37 133-169 57-94 (105)
281 1x4a_A Splicing factor, argini 89.0 0.15 5E-06 39.2 1.6 40 133-172 59-99 (109)
282 2ywk_A Putative RNA-binding pr 88.9 0.069 2.3E-06 39.7 -0.3 39 132-170 54-93 (95)
283 1fjc_A Nucleolin RBD2, protein 88.9 0.052 1.8E-06 40.6 -1.0 42 132-173 50-92 (96)
284 2dgw_A Probable RNA-binding pr 88.9 0.037 1.3E-06 41.1 -1.8 41 132-173 47-88 (91)
285 2d9p_A Polyadenylate-binding p 88.8 0.092 3.2E-06 39.8 0.4 42 132-173 52-94 (103)
286 2dnh_A Bruno-like 5, RNA bindi 88.7 0.083 2.8E-06 40.1 0.1 43 132-174 53-99 (105)
287 2bz2_A Negative elongation fac 88.7 0.12 4E-06 41.7 0.9 42 133-174 71-113 (121)
288 2la4_A Nuclear and cytoplasmic 88.6 0.13 4.3E-06 38.9 1.0 38 133-170 61-99 (101)
289 2ek1_A RNA-binding protein 12; 88.6 0.064 2.2E-06 39.8 -0.6 38 133-170 55-93 (95)
290 2cqp_A RNA-binding protein 12; 88.5 0.06 2.1E-06 40.3 -0.8 39 133-171 55-94 (98)
291 2cpd_A Apobec-1 stimulating pr 88.3 0.15 5.3E-06 38.4 1.3 41 133-173 49-90 (99)
292 4a8x_A RNA-binding protein wit 88.2 0.11 3.7E-06 37.8 0.4 37 134-170 46-83 (88)
293 3mdf_A Peptidyl-prolyl CIS-tra 88.2 0.087 3E-06 38.2 -0.2 37 132-168 46-83 (85)
294 2dhg_A TRNA selenocysteine ass 88.2 0.1 3.4E-06 39.5 0.2 42 132-173 48-91 (104)
295 2dng_A Eukaryotic translation 88.0 0.061 2.1E-06 40.9 -1.1 42 132-174 53-95 (103)
296 2dit_A HIV TAT specific factor 87.9 0.098 3.4E-06 41.0 -0.0 40 132-171 61-101 (112)
297 2dis_A Unnamed protein product 87.9 0.15 5.2E-06 38.8 1.0 43 133-175 50-95 (109)
298 2e5h_A Zinc finger CCHC-type a 87.9 0.1 3.5E-06 38.6 0.1 37 132-168 55-92 (94)
299 1nu4_A U1A RNA binding domain; 87.8 0.089 3E-06 39.2 -0.3 42 132-173 48-90 (97)
300 2rs2_A Musashi-1, RNA-binding 87.7 0.091 3.1E-06 41.1 -0.3 43 132-174 64-106 (109)
301 2kvi_A Nuclear polyadenylated 87.7 0.14 4.8E-06 38.7 0.7 41 134-174 44-85 (96)
302 2la6_A RNA-binding protein FUS 87.7 0.077 2.6E-06 40.1 -0.7 37 132-168 60-97 (99)
303 1x4g_A Nucleolysin TIAR; struc 87.7 0.19 6.5E-06 38.7 1.5 43 133-175 59-102 (109)
304 2jrs_A RNA-binding protein 39; 87.4 0.082 2.8E-06 41.4 -0.7 39 133-171 66-105 (108)
305 2cqc_A Arginine/serine-rich sp 87.3 0.089 3E-06 38.9 -0.6 39 132-170 54-93 (95)
306 1whx_A Hypothetical protein ri 87.0 0.26 8.8E-06 38.7 1.9 45 133-177 44-89 (111)
307 1why_A Hypothetical protein ri 86.9 0.35 1.2E-05 36.3 2.6 41 133-173 51-94 (97)
308 2div_A TRNA selenocysteine ass 86.9 0.076 2.6E-06 39.9 -1.1 39 133-171 50-93 (99)
309 2xnq_A Nuclear polyadenylated 86.1 0.2 7E-06 38.3 0.9 39 134-172 56-95 (97)
310 2i2y_A Fusion protein consists 86.0 0.18 6E-06 41.0 0.5 38 134-171 109-147 (150)
311 2krb_A Eukaryotic translation 86.0 0.08 2.7E-06 38.7 -1.4 27 133-159 45-71 (81)
312 3ucg_A Polyadenylate-binding p 85.8 0.14 4.6E-06 37.5 -0.3 39 132-171 45-84 (89)
313 2cqd_A RNA-binding region cont 85.8 0.13 4.5E-06 39.9 -0.3 43 132-174 56-98 (116)
314 1u6f_A Tcubp1, RNA-binding pro 85.7 0.11 3.8E-06 41.4 -0.8 42 133-174 82-124 (139)
315 3ulh_A THO complex subunit 4; 85.6 0.12 4.2E-06 39.2 -0.6 39 132-170 67-106 (107)
316 2khc_A Testis-specific RNP-typ 85.6 0.16 5.3E-06 39.4 -0.0 37 132-168 79-116 (118)
317 2do0_A HnRNP M, heterogeneous 85.4 0.2 6.8E-06 38.5 0.5 40 132-171 53-93 (114)
318 2nlw_A Eukaryotic translation 85.4 0.13 4.3E-06 39.8 -0.6 38 132-169 58-97 (105)
319 3n9u_C Cleavage and polyadenyl 85.3 0.093 3.2E-06 44.3 -1.5 39 132-170 96-135 (156)
320 2cq4_A RNA binding motif prote 84.8 0.14 4.8E-06 39.6 -0.6 40 132-172 64-104 (114)
321 2jwn_A Embryonic polyadenylate 84.7 0.16 5.6E-06 39.7 -0.3 41 132-173 75-116 (124)
322 1uaw_A Mouse-musashi-1; RNP-ty 84.5 0.15 5.1E-06 36.3 -0.6 34 132-166 39-73 (77)
323 1p1t_A Cleavage stimulation fa 84.5 0.091 3.1E-06 39.6 -1.8 39 133-171 48-87 (104)
324 2dnq_A RNA-binding protein 4B; 84.4 0.35 1.2E-05 35.9 1.4 40 135-174 42-82 (90)
325 2dnp_A RNA-binding protein 14; 84.3 0.41 1.4E-05 35.5 1.8 42 133-174 41-83 (90)
326 2ku7_A MLL1 PHD3-CYP33 RRM chi 83.9 0.18 6E-06 39.7 -0.4 36 132-167 102-138 (140)
327 1rk8_A CG8781-PA, CG8781-PA pr 83.9 0.17 5.9E-06 42.0 -0.5 43 133-175 112-155 (165)
328 3ue2_A Poly(U)-binding-splicin 83.5 0.15 5.1E-06 41.8 -1.0 37 133-169 69-106 (118)
329 2dh8_A DAZ-associated protein 83.4 0.23 8E-06 37.7 0.1 41 133-174 56-97 (105)
330 1wf1_A RNA-binding protein RAL 82.9 0.42 1.4E-05 36.8 1.3 38 134-171 61-99 (110)
331 3ctr_A Poly(A)-specific ribonu 82.8 1.7 5.8E-05 36.6 5.0 53 196-261 7-59 (101)
332 2dnn_A RNA-binding protein 12; 82.4 0.23 8E-06 39.8 -0.2 37 132-169 53-90 (109)
333 1sjq_A Polypyrimidine tract-bi 82.2 0.55 1.9E-05 38.3 1.9 44 133-176 50-96 (105)
334 1x4b_A Heterogeneous nuclear r 82.0 0.27 9.2E-06 38.1 -0.1 42 132-174 66-108 (116)
335 2jvo_A Nucleolar protein 3; nu 81.5 0.37 1.3E-05 37.8 0.6 39 135-173 65-104 (108)
336 2lmi_A GRSF-1, G-rich sequence 81.1 0.23 7.9E-06 38.4 -0.7 37 132-169 52-89 (107)
337 2d9o_A DNAJ (HSP40) homolog, s 80.8 0.38 1.3E-05 38.4 0.4 41 132-173 51-91 (100)
338 2diu_A KIAA0430 protein; struc 80.4 0.42 1.4E-05 39.6 0.6 39 136-174 47-86 (96)
339 1wel_A RNA-binding protein 12; 79.8 0.17 5.7E-06 40.1 -2.0 38 132-170 64-102 (124)
340 2ytc_A PRE-mRNA-splicing facto 79.6 0.22 7.7E-06 36.1 -1.2 35 133-167 46-82 (85)
341 1x5o_A RNA binding motif, sing 79.3 0.29 9.8E-06 37.7 -0.7 28 132-159 63-90 (114)
342 1h2v_Z 20 kDa nuclear CAP bind 78.5 0.37 1.3E-05 39.3 -0.3 43 132-174 78-121 (156)
343 1wex_A Hypothetical protein (r 78.3 1.2 4.1E-05 35.3 2.6 42 133-174 49-93 (104)
344 2hgn_A Heterogeneous nuclear r 78.1 0.28 9.5E-06 41.2 -1.2 42 132-174 83-125 (139)
345 2mss_A Protein (musashi1); RNA 78.0 0.23 7.7E-06 35.4 -1.6 26 132-158 38-63 (75)
346 3q2s_C Cleavage and polyadenyl 77.9 0.2 6.7E-06 44.7 -2.3 40 132-171 109-149 (229)
347 2dgt_A RNA-binding protein 30; 77.8 0.85 2.9E-05 33.8 1.5 41 134-174 43-84 (92)
348 2cq2_A Hypothetical protein LO 77.5 0.43 1.5E-05 39.5 -0.2 42 133-174 61-108 (114)
349 1wez_A HnRNP H', FTP-3, hetero 77.4 0.28 9.6E-06 38.2 -1.3 38 132-170 52-90 (102)
350 2cq1_A PTB-like protein L; RRM 77.3 0.21 7E-06 39.6 -2.1 58 119-176 35-95 (101)
351 1x4f_A Matrin 3; structural ge 77.1 0.19 6.7E-06 41.2 -2.4 55 117-171 44-101 (112)
352 1iqt_A AUF1, heterogeneous nuc 76.5 0.34 1.1E-05 34.4 -1.0 23 132-154 38-60 (75)
353 2hgm_A HNRPF protein, heteroge 75.4 0.44 1.5E-05 39.6 -0.7 38 132-169 81-118 (126)
354 3dxb_A Thioredoxin N-terminall 75.3 0.44 1.5E-05 40.9 -0.7 36 133-168 173-209 (222)
355 2cqg_A TDP-43, TAR DNA-binding 75.2 0.4 1.4E-05 36.3 -0.9 42 132-174 54-95 (103)
356 2hgl_A HNRPF protein, heteroge 75.2 0.21 7.2E-06 41.7 -2.7 37 132-169 85-122 (136)
357 3r27_A HnRNP L, heterogeneous 75.1 0.93 3.2E-05 36.7 1.2 39 133-171 55-96 (100)
358 2f3j_A RNA and export factor b 75.0 0.59 2E-05 40.0 -0.0 43 132-174 126-169 (177)
359 1s79_A Lupus LA protein; RRM, 74.3 0.44 1.5E-05 37.5 -0.9 35 132-167 49-84 (103)
360 1wg5_A Heterogeneous nuclear r 74.2 0.59 2E-05 35.9 -0.2 39 132-171 54-93 (104)
361 1wwh_A Nucleoporin 35, nucleop 73.7 13 0.00044 31.7 7.9 65 191-268 21-85 (119)
362 2db1_A Heterogeneous nuclear r 73.7 0.27 9.4E-06 39.0 -2.3 38 132-170 58-96 (118)
363 1x4d_A Matrin 3; structural ge 73.5 0.24 8.3E-06 39.7 -2.6 55 117-171 34-91 (102)
364 2ad9_A Polypyrimidine tract-bi 73.2 1.5 5E-05 36.4 1.9 45 133-177 65-112 (119)
365 3pgw_S U1-70K; protein-RNA com 72.4 0.57 2E-05 45.8 -0.8 43 132-174 141-184 (437)
366 2hzc_A Splicing factor U2AF 65 70.4 0.61 2.1E-05 33.8 -0.9 33 133-166 51-84 (87)
367 3u1l_A PRE-mRNA-splicing facto 70.3 0.8 2.7E-05 42.3 -0.3 43 133-175 177-232 (240)
368 2dnl_A Cytoplasmic polyadenyla 69.9 1.5 5.1E-05 34.2 1.2 24 132-155 49-72 (114)
369 3s7r_A Heterogeneous nuclear r 69.1 0.34 1.2E-05 35.4 -2.5 34 132-165 50-83 (87)
370 2cpy_A RNA-binding protein 12; 69.1 0.42 1.4E-05 37.3 -2.1 41 132-173 54-95 (114)
371 2wbr_A GW182, gawky, LD47780P; 67.2 1.3 4.5E-05 36.0 0.4 50 120-169 28-78 (89)
372 1x4c_A Splicing factor, argini 66.2 1.7 5.9E-05 33.4 0.9 39 136-174 51-95 (108)
373 2g0c_A ATP-dependent RNA helic 64.3 11 0.00037 27.9 4.9 65 195-268 1-66 (76)
374 3beg_B Splicing factor, argini 63.5 2.2 7.6E-05 33.4 1.0 41 136-176 52-93 (115)
375 1sjr_A Polypyrimidine tract-bi 57.2 2.1 7.1E-05 37.7 -0.2 42 132-173 81-125 (164)
376 2e44_A Insulin-like growth fac 56.0 2.6 9E-05 31.2 0.2 43 130-172 49-92 (96)
377 2dha_A FLJ20171 protein; RRM d 55.6 0.89 3E-05 37.3 -2.6 23 132-154 65-87 (123)
378 2e5g_A U6 snRNA-specific termi 49.7 1.3 4.5E-05 33.1 -2.4 33 137-170 47-80 (94)
379 3zzy_A Polypyrimidine tract-bi 49.3 2.6 8.9E-05 35.6 -0.8 41 132-172 62-106 (130)
380 3d45_A Poly(A)-specific ribonu 47.4 40 0.0014 33.9 7.2 65 187-264 432-496 (507)
381 3d2w_A TAR DNA-binding protein 44.5 2 7E-05 32.4 -2.0 19 133-151 46-64 (89)
382 3p3d_A Nucleoporin 53; structu 44.4 14 0.00046 32.3 2.9 65 201-268 14-88 (132)
383 2xs2_A Deleted in azoospermia- 40.7 1.7 5.8E-05 32.7 -3.0 22 132-153 47-68 (102)
384 2j8a_A Histone-lysine N-methyl 37.9 3.7 0.00013 36.0 -1.7 35 133-167 46-91 (136)
385 2e5i_A Heterogeneous nuclear r 37.6 6.8 0.00023 32.5 -0.1 38 135-172 61-102 (124)
386 2voo_A Lupus LA protein; RNA-b 37.6 3.3 0.00011 35.8 -2.1 36 132-167 147-182 (193)
387 1xn9_A 30S ribosomal protein S 35.9 36 0.0012 28.2 4.0 51 207-261 34-84 (101)
388 2v94_A RPS24, 30S ribosomal pr 35.5 38 0.0013 28.3 4.2 49 207-259 43-91 (107)
389 3tht_A Alkylated DNA repair pr 32.9 2.2 7.6E-05 41.3 -4.3 27 133-159 54-80 (345)
390 2g1d_A 30S ribosomal protein S 31.8 34 0.0012 28.2 3.2 50 207-260 35-84 (98)
391 1ywx_A 30S ribosomal protein S 29.3 42 0.0014 27.9 3.4 47 208-258 35-81 (102)
392 2hpu_A NOSL protein; alpha bet 25.4 39 0.0013 29.9 2.7 38 231-271 103-140 (175)
393 4fp9_B Mterf domain-containing 23.9 17 0.00057 35.1 0.0 25 94-118 311-335 (335)
394 1fme_A FSD-EY peptide; beta-BE 20.8 70 0.0024 21.5 2.5 18 247-264 11-28 (28)
No 1
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=5.2e-19 Score=144.90 Aligned_cols=143 Identities=13% Similarity=0.240 Sum_probs=104.1
Q ss_pred CCCCccccceecchHHHHHHHHHHhhHH-hhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE-AQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD 211 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr~-araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kD 211 (411)
+++|||++.|.+.+.++++|+++.+... .....++............ .............+|||+|||...+ +.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nl~~~~~-~~~ 86 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS---HHHHHHMDVEGMTSLKVDNLTYRTS-PDT 86 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC---CCSSCCCCCCBCCEEEEESCCTTCC-HHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc---cccccccCCCCCCEEEEeCCCCCCC-HHH
Confidence 7899999999999999999999876431 1111111111100000000 0111223345678999999999865 889
Q ss_pred HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCCCC
Q 015240 212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 212 L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S~~~ 287 (411)
|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|. -+.|+|+.+....+..
T Consensus 87 l~~~F~~~G~v~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 87 LRRVFEKYGRVGDVY--IPRDRYTK--ESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQMARYGRPPD 154 (158)
T ss_dssp HHHHHHHHSCEEEEE--CCCCSSCT--TSCCEEEEEESBHHHHHHHHHHSTTEESS----SSEEEEEEECCSSCCC
T ss_pred HHHHHHhcCCeEEEE--EeecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEECCCCCCCC
Confidence 999999999999998 56666686 89999999999999999999999999976 3678888887665443
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.9e-18 Score=136.28 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=102.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.+++|||++.|.+...++++++.|.+.. .++.+.+......+. .....+.+|||+|||...+ ..
T Consensus 38 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t-~~ 102 (166)
T 3md3_A 38 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ--------------SSSDDTFNLFVGDLNVNVD-DE 102 (166)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC--------------CCCTTCEEEEEESCCTTCC-HH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--------------CCCCCCceEEECCCCCCCC-HH
Confidence 3689999999999999999999998876 666666654332211 2334677999999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeee
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMV 280 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~ 280 (411)
+|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+ +.|+|..+
T Consensus 103 ~l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 103 TLRNAFKDFPSYLSGH--VMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINWA 164 (166)
T ss_dssp HHHHHHTTSTTEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred HHHHHHhccCCeeEEE--EEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCCccCC----cEEEEEec
Confidence 9999999999999998 55566676 899999999999999999999999999874 45666554
No 3
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=8.8e-18 Score=138.37 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=108.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCC----CCCCCCCCCCCccEEEEcCCCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDE----PKKKEPEDMPSGIRVRLLNLPKKK 206 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~----~akk~~~~~~dgvRVrVGNLPkk~ 206 (411)
.+++|||++.|.+.+.++++| +|.+.. .++.+.+................ ...........+-+|||+|||...
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 126 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYL 126 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCC
Confidence 478999999999999999999 788766 77888877665432211111100 011122233578999999999986
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S 284 (411)
+ ..+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+ +.++++.+....
T Consensus 127 ~-~~~l~~~f~~~G~v~~~~--~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 195 (198)
T 2yh0_A 127 N-DDQVKELLTSFGPLKAFN--LVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVGA 195 (198)
T ss_dssp C-HHHHHHHHHTBSCEEEEE--EEECTTTC--SEEEEEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCCC
T ss_pred C-HHHHHHHHHHcCCccEEE--EeecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCCC
Confidence 5 889999999999999998 55565576 899999999999999999999999999863 567777766543
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=1.2e-17 Score=133.98 Aligned_cols=124 Identities=13% Similarity=0.176 Sum_probs=99.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD 211 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kD 211 (411)
+++|||++.|.+.+.++++++.|.+.. .++.+.+..+.+.+ ....+.+|||+|||...+ ..+
T Consensus 43 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----------------~~~~~~~l~v~nl~~~~t-~~~ 105 (168)
T 1b7f_A 43 YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG----------------ESIKDTNLYVTNLPRTIT-DDQ 105 (168)
T ss_dssp EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS----------------STTTTCEEEEESCCTTCC-HHH
T ss_pred ccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc----------------ccCCCCCEEEeCCCCCCC-HHH
Confidence 588999999999999999999998866 66666655433211 123457899999999865 889
Q ss_pred HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 015240 212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM 279 (411)
Q Consensus 212 L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~ 279 (411)
|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++++.+||..|.++ .++|++..
T Consensus 106 l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~~~l~V~~ 167 (168)
T 1b7f_A 106 LDTIFGKYGSIVQKN--ILRDKLTG--RPRGVAFVRYNKREEAQEAISALNNVIPEGG--SQPLSVRL 167 (168)
T ss_dssp HHHHHTSSSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC--SSCCEEEE
T ss_pred HHHhhhcCCcEEEEE--EEEcCCCC--CcceEEEEEECCHHHHHHHHHHhcCCEecCC--CeEEEEEe
Confidence 999999999999998 44555565 7899999999999999999999999998764 35555544
No 5
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=1.2e-17 Score=134.81 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=96.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD 211 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kD 211 (411)
+++|||++.|.+.+.+++++ +|.+.. .++.+.+...... .....+.+|||+|||...+ +.+
T Consensus 49 ~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~----------------~~~~~~~~l~v~nlp~~~t-~~~ 110 (172)
T 2g4b_A 49 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY----------------QPLPGAHKLFIGGLPNYLN-DDQ 110 (172)
T ss_dssp TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC----------------CCCTTTTCEEEECCCTTCC-HHH
T ss_pred CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc----------------CCCCCCCEEEEEcCCCcCC-HHH
Confidence 67999999999999999999 777755 6665555421111 1123478899999999865 889
Q ss_pred HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 015240 212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM 279 (411)
Q Consensus 212 L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~ 279 (411)
|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+ +.++++.
T Consensus 111 l~~~f~~~G~v~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 170 (172)
T 2g4b_A 111 VKELLTSFGPLKAFN--LVKDSATG--LSKGYAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQR 170 (172)
T ss_dssp HHHHHHTTSCEEEEE--EEECTTTC--SEEEEEEEEESSTTHHHHHHHHHTTCEETT----EECEEEE
T ss_pred HHHHHHhcCCceEEE--EEecCCCC--CcceEEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEe
Confidence 999999999999998 45555575 899999999999999999999999999874 3445544
No 6
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.2e-17 Score=137.01 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=104.8
Q ss_pred CCCCccccceecchHHHHHHHHH-HhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEI-QQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM-~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
+-+|++.+.+.+.+.+++++++| .+.. +| +++++.....+.....................-+|||+|||...+ +.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t-~~ 88 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN-KT 88 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS-CH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC-HH
Confidence 67899999999999999999999 6766 66 888887665432211111011112334456788999999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
+|+.+|..+|.|.+|++. .+ +||||||+|.+.++|.++|+.+||..|. -+.|+|+.+...
T Consensus 89 ~l~~~F~~~G~i~~v~i~--~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVA--RN-------PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEEC--SS-------SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEe--eC-------CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEcCCC
Confidence 999999999999999843 22 4899999999999999999999999986 366777776554
No 7
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=2.2e-17 Score=134.41 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=98.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.++||||++.|.+.+.++++| +|.+.. .++.+.+......+. .....+.+|||+|||...+ ..
T Consensus 51 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~--------------~~~~~~~~l~v~nlp~~~t-~~ 114 (175)
T 1fje_B 51 GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS--------------KKVRAARTLLAKNLSFNIT-ED 114 (175)
T ss_dssp ETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC--------------STTGGGGEEEEESCCSSCC-HH
T ss_pred CccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc--------------cccccCCEEEEeCCCCCCC-HH
Confidence 379999999999999999999 587766 666666654332211 1223578999999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S 284 (411)
+|+.+|..+|.|..+ +.|| .+||||||+|.+.++|.++|+.+||+.|.+ +.|+|..+..+|
T Consensus 115 ~l~~~F~~~g~v~~~-------~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~i~v~~a~~k~ 175 (175)
T 1fje_B 115 ELKEVFEDALEIRLV-------SQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHCTTCSEEEEE-------CSSS--SCCSEEEEECSSHHHHHHHHHHHTEEEETT----EEEEEEECSSCC
T ss_pred HHHHHHHhcCeEEEe-------cCCC--CCceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEecCCCC
Confidence 999999999987655 3454 789999999999999999999999999874 567787776553
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=2e-17 Score=131.65 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=94.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
++++|||++.|.+.+.+++++++|.+.. .++.+.+....+.+ ....+.+|||+|||...+ ..
T Consensus 41 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----------------~~~~~~~l~v~nl~~~~t-~~ 103 (167)
T 1fxl_A 41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS----------------ASIRDANLYVSGLPKTMT-QK 103 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC----------------GGGTTCEEEEESCCTTCC-HH
T ss_pred CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc----------------ccCCCCcEEECCCCCcCC-HH
Confidence 3678999999999999999999998866 55555554332111 123456899999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
+|+.+|..+|.|..++ ...++.|| .+||||||+|.+.++|.++++.+||+.|.+.
T Consensus 104 ~l~~~f~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 104 ELEQLFSQYGRIITSR--ILVDQVTG--VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp HHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHhcCCEeEEE--EEecCCCC--CccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 9999999999999998 44555565 8899999999999999999999999998753
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=6e-18 Score=141.09 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=103.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.+++|||++.|.+.+.++++|++|.+.. .++.+.+......+.. .+. ............+|||+|||...+ ..
T Consensus 67 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~-~~~----~~~~~~~~~~~~~l~v~nlp~~~t-~~ 140 (216)
T 2qfj_A 67 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQA-QPI----IDQLAEEARAFNRIYVASVHQDLS-DD 140 (216)
T ss_dssp -CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGG-HHH----HHHHHHHHTTSCEEEEECCCTTCC-HH
T ss_pred CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcccc-chh----hhhhhcccCCCcEEEEeCCCCcCC-HH
Confidence 3689999999999999999999998766 6666665432221110 000 000111234668999999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+ +.|+++.+...
T Consensus 141 ~l~~~f~~~G~v~~v~--i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~l~g~~~~g----~~i~V~~a~~~ 205 (216)
T 2qfj_A 141 DIKSVFEAFGKIKSAT--LARDPTTG--KHKGYGFIEYEKAQSSQDAVSSMNLFDLGG----QYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHTTSSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCBCSS----SBCEEEECSSC
T ss_pred HHHHHHhccCCeeEEE--EEecCCCC--CcCceEEEEecCHHHHHHHHHHccCCEeCC----cEEEEEEecCC
Confidence 9999999999999998 55666676 899999999999999999999999999863 56677766654
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=128.20 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=72.0
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.....|.+|||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 14 n~~~~gt~lfV~nLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 14 NLYFQGTNLIVNYLPQNMT-QDELRSLFSSIGEVESAK--LIRDKVAG--HSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp --CCCCSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECSSSC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEeE--eeecCCCC--cccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3446789999999999865 889999999999999998 55677787 999999999999999999999999999874
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+.|+|+.+.
T Consensus 89 ----r~l~V~~Ak 97 (99)
T 4fxv_A 89 ----KTIKVSYAR 97 (99)
T ss_dssp ----EECEEEECC
T ss_pred ----EEEEEEEee
Confidence 566777664
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=3.8e-17 Score=131.33 Aligned_cols=127 Identities=12% Similarity=0.171 Sum_probs=95.9
Q ss_pred CCCCccccceecchHHHHHHHHHHhhHH----hhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCch
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE----AQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNI 208 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr~----araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni 208 (411)
+++|||++.|.+.+.++++++.|.+..- ++.+.+.. + .........+-+|||+|||...+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~l~v~nl~~~~t- 108 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP-----A----------DSEKNNAVEDRKLFIGMISKKCT- 108 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE-----C----------GGGCCSCGGGSEEEEESCCTTCC-
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc-----c----------cccccccCCCCeEEEcCCCCcCC-
Confidence 6899999999999999999999876441 12222111 1 11112234667899999999865
Q ss_pred HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeec
Q 015240 209 HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVN 281 (411)
Q Consensus 209 ~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~ 281 (411)
..+|+++|..+|.|.++++. .++ +| .+||||||+|.+.++|.++|+.+||..+..|- .++|++..|+
T Consensus 109 ~~~l~~~F~~~G~i~~v~~~--~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~-~~~l~V~~ad 175 (175)
T 3nmr_A 109 ENDIRVMFSSFGQIEECRIL--RGP-DG--LSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC-SSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHGGGSCEEEEEEE--ECT-TS--CEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC-SSCCEEEECC
T ss_pred HHHHHHHHHhCCCEEEEEEE--ECC-CC--CEEEEEEEEECCHHHHHHHHHHhcCCcccCCC-CCCeEEEecC
Confidence 88999999999999999843 332 44 89999999999999999999999999987641 3566666553
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=3e-17 Score=134.98 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=94.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDL 212 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kDL 212 (411)
+++|||++.|.+.+.++++|+..+..-.++.+.+......+... .+......-+|||+|||...+ +.+|
T Consensus 53 ~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~----------~~~~~~~~~~l~V~nLp~~~t-~~~l 121 (196)
T 1l3k_A 53 RSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ----------RPGAHLTVKKIFVGGIKEDTE-EHHL 121 (196)
T ss_dssp CEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------------CCSEEEEECCTTTCC-HHHH
T ss_pred CccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccccc----------ccccCCCcceEEEeCCCCCCC-HHHH
Confidence 68999999999999999999652222255555555433221111 112234567999999999865 8899
Q ss_pred HHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCCC
Q 015240 213 KSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 213 ~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S~ 285 (411)
+++|..+|.|.+|+ ...++.|| .+||||||.|.+.++|.++|+. +|+.|.+ +.|.|..+.++..
T Consensus 122 ~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 122 RDYFEQYGKIEVIE--IMTDRGSG--KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG----HNCEVRKALSKQE 185 (196)
T ss_dssp HHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHC-SCCEETT----EECEEEECC----
T ss_pred HHHHhcCCCeEEEE--EeecCCCC--CccceEEEEECCHHHHHHHHHh-CCcEECC----EEEEEEecCChhH
Confidence 99999999999998 55566676 8999999999999999999997 8998775 3466666655443
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.66 E-value=1.6e-16 Score=140.12 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=100.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCC-CchH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKK-KNIH 209 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk-~ni~ 209 (411)
++++|||++.|.+...+.++++.|.+.. .++.+.+..+.+..... +.......+-+|||+|||.. .+ .
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~---------~~~~~~~~~~~l~v~nlp~~~~t-~ 225 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK---------RTDSATLEGREIMIRNLSTELLD-E 225 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------------CCTTTEEEEEEECTTTCC-H
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc---------cccccCCCCceEEEECCCcccCC-H
Confidence 4689999999999999999999999876 77777766544221110 01234567889999999998 65 8
Q ss_pred HHHHHHhccCCCeeEEeeccccCCC-CCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 210 RDLKSAFKGVPGIINIIPVVSGNKK-TKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 210 kDL~~aFk~vGgvisIkpav~~nrK-TgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
.+|+++|..+|.|.+|++ ..++. || .+||||||+|.+.++|.++| .+||+.|.+ +.|+|..+..+
T Consensus 226 ~~l~~~F~~~G~v~~v~i--~~~~~~tg--~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~k 291 (292)
T 2ghp_A 226 NLLRESFEGFGSIEKINI--PAGQKEHS--FNNCCAFMVFENKDSAERAL-QMNRSLLGN----REISVSLADKK 291 (292)
T ss_dssp HHHHHHHGGGSCEEEEEC--CSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT----EEEEEEECCCC
T ss_pred HHHHHHHhccCCeeEEEE--EecCCcCC--CCceEEEEEeCCHHHHHHHH-HhcCCEECC----cEEEEEEecCC
Confidence 899999999999999984 44443 55 89999999999999999999 999999873 56777776654
No 14
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=2e-16 Score=132.61 Aligned_cols=89 Identities=17% Similarity=0.267 Sum_probs=74.5
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+....++-+|||+|||..++ ..+|+.+|..+|.|.+|. ...++.|| .+||||||+|.+.++|.++|+.|||..|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t-~~~L~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQ-EDEIQEKFCDYGEIKNIH--LNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTS--SEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCCEEEEeCCCCCCC-HHHHHHHhhcCCCEEEEE--EEecCCCC--cEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34456788999999999865 889999999999999998 55666786 99999999999999999999999999986
Q ss_pred cceeeceeeeeeecCCCC
Q 015240 268 FGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~ 285 (411)
+ +.|+|+.+...++
T Consensus 141 g----~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 141 G----QTIQVDWCFVKGP 154 (165)
T ss_dssp T----EECEEEESEECC-
T ss_pred C----EEEEEEEecCCCC
Confidence 4 5677777766554
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=9.8e-16 Score=119.93 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...+.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEIT-TEDIKAAFAPFGRISDAR--VVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG- 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTCEETT-
T ss_pred CCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence 345788999999999865 889999999999999998 45666676 899999999999999999999999999773
Q ss_pred eeeceeeeeeecCCCCCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSVDGHS 292 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~~~~s 292 (411)
+.|+|+.+............
T Consensus 85 ---~~l~V~~a~~~~~~~~~~~~ 104 (115)
T 2dgo_A 85 ---RQIRTNWATRKPPAPKSTYE 104 (115)
T ss_dssp ---EECEEEESSCCCCCSCCCCC
T ss_pred ---EEEEEEEccCCCCCCccccc
Confidence 67888888877665443333
No 16
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.3e-16 Score=118.75 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=78.7
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCee-EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII-NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi-sIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....+-+|||+|||...+ +.+|+.+|..+|.|. +++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMD-ENFISRAFATMGETVMSVK--IIRNRLTG--IPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp CCSSSSEEEECSCCTTCC-HHHHHHHHHHTTCCCCEEE--EEECSSSC--CEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CCCCccEEEEeCCCCCCC-HHHHHHHHHHhCCcceEEE--EeecCCCC--CcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 345788999999999865 889999999999999 998 55666686 899999999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCC
Q 015240 269 GKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~ 285 (411)
.++.+.++++.+.....
T Consensus 80 ~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 80 ATPAKRFKLNYATYSGP 96 (99)
T ss_dssp CSSCEECCEEETTCCSS
T ss_pred CCcceeEEEeecCCCCC
Confidence 76677799998876544
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=115.59 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=76.5
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.+++-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 2 ~~~~~~l~v~nlp~~~t-~~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 73 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNIT-EDMLRGIFEPFGKIDNIV--LMKDSDTG--RSKGYGFITFSDSECARRALEQLNGFELA--- 73 (95)
T ss_dssp CSCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--EECCSSSC--CCCSEEEEEESCHHHHHHHHHHHTTCCSS---
T ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEE--EeecCCCC--ceeeEEEEEECCHHHHHHHHHHhCCCeeC---
Confidence 45778999999999865 889999999999999998 55666676 89999999999999999999999999987
Q ss_pred eeceeeeeeecCCCCCCC
Q 015240 271 VQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 271 VEK~ikce~~~~~S~~~~ 288 (411)
-+.|+++.+..+....+
T Consensus 74 -g~~l~V~~a~~~~~~~~ 90 (95)
T 2dnz_A 74 -GRPMRVGHVTERLDGGS 90 (95)
T ss_dssp -SSCCEEEESSCCCCCCC
T ss_pred -CcEEEEEEcccccCCCC
Confidence 46788888877665544
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=4.2e-17 Score=131.04 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=93.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRD 211 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kD 211 (411)
.+++|||++.|.+.+.++++++.+ ..-.++.+.+..... . ......-+|||+|||...+ +.+
T Consensus 42 g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~~~-------~---------~~~~~~~~l~V~nlp~~~t-~~~ 103 (167)
T 2cjk_A 42 GRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIP-------R---------DEQDKTGKIFVGGIGPDVR-PKE 103 (167)
T ss_dssp SSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEECCC-------H---------HHHHHCEEEEEEEECTTCC-HHH
T ss_pred CCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccccc-------h---------hhccCCCeEEECCCCCCCC-HHH
Confidence 479999999999999999999742 111333333222111 0 1112455899999999865 889
Q ss_pred HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 015240 212 LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 212 L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~ 282 (411)
|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++++ +||..|.+ +.|+|..+.+
T Consensus 104 l~~~F~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 104 FEEFFSQWGTIIDAQ--LMLDKDTG--QSRGFGFVTYDSADAVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHTTSCCSEEE--CCCSSSSS--TTSEEEEEEESSHHHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHhCccEEEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 999999999999998 55666676 899999999999999999998 79998874 5666666654
No 19
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=6.3e-17 Score=139.12 Aligned_cols=126 Identities=15% Similarity=0.223 Sum_probs=96.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
++++|||++.|.+...++++|++|.+.. .++.+.+......+. ......-+|||+|||...+ ++
T Consensus 54 g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~--------------~~~~~~~~l~v~nl~~~~t-~~ 118 (213)
T 4f02_A 54 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPS--------------LRKSGVGNIFIKNLDKSID-NK 118 (213)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTH--------------HHHHCTTEEEEESCCTTCC-HH
T ss_pred CCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccc--------------ccccccccceECCcccccH-HH
Confidence 5899999999999999999999998755 555544332211110 0111345899999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNS 282 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~ 282 (411)
+|+++|..+|.|.++++.. ++. .+||||||+|.+.++|.++|+.+||+.|.+ +.|++..+..
T Consensus 119 ~l~~~F~~~G~i~~~~i~~--d~~----~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 119 ALYDTFSAFGNILSCKVVC--DEN----GSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHHHHHGGGSCEEEEEEEE--ETT----EEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHhhcCCeEEEEeec--cCC----CCceEEEEEeCCHHHHHHHHHHhCCCEECC----EEEEEEEcCC
Confidence 9999999999999998543 322 369999999999999999999999999874 4566666654
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=117.80 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...+.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.|||+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-- 81 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTS-PDSLRRVFEKYGRVGDVY--IPREPHTK--APRGFAFVRFHDRRDAQDAEAAMDGAELD-- 81 (103)
T ss_dssp CCSCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--CCBCSSSC--SBCSCEEEEESSSSHHHHHHHHHSSCCBT--
T ss_pred CCCCCeEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEeCCCCC--CCCeEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 345678999999999865 889999999999999998 55666676 89999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+++.+.......+
T Consensus 82 --g~~l~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 82 --GRELRVQVARYGRRDLS 98 (103)
T ss_dssp --TBCCEEEECSSCCSCCC
T ss_pred --CcEEEEEECCcCCCCCC
Confidence 36788888876655444
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=115.72 Aligned_cols=88 Identities=19% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...++-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 76 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSS-EEDLEKLFSAYGPLSELH--YPIDSLTK--KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ-- 76 (99)
T ss_dssp CCCSCEEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCCCTTTC--CCCSEEEEEESSHHHHHHHHHHTTTEESS--
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEE--EEecCCCC--CcCeEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 345788999999999865 889999999999999998 55666676 89999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
-+.|+++.+..+...
T Consensus 77 --g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 77 --GRMLHVLPSTIKKEA 91 (99)
T ss_dssp --SCEEEEEECCCCSTT
T ss_pred --CcEEEEEEcCCCccc
Confidence 366788887776543
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=1.6e-16 Score=120.65 Aligned_cols=84 Identities=21% Similarity=0.257 Sum_probs=65.6
Q ss_pred cEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 195 IRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 195 vRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.+|||+|||...+ +.+|+++|..+| .|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 2 ~~l~V~nL~~~~t-~~~l~~~F~~~G~~~v~~v~--i~~~~~~g--~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g---- 72 (90)
T 3p5t_L 2 IALYIGNLTWWTT-DEDLTEAVHSLGVNDILEIK--FFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG---- 72 (90)
T ss_dssp --CEEESCCTTCC-HHHHHHHHHTTTCCCCCCEE--EEECTTTC--CEEEEEEECC-CHHHHHHHHHHGGGSCSSS----
T ss_pred eEEEEeCCCCCCC-HHHHHHHHHHhCCCceEEEE--EEecCCCC--ccCcEEEEEECCHHHHHHHHHHcCCCeeCC----
Confidence 4799999999865 889999999999 999998 56677787 999999999999999999999999999874
Q ss_pred ceeeeeeecCCCCCC
Q 015240 273 KQIRCEMVNSSSSNS 287 (411)
Q Consensus 273 K~ikce~~~~~S~~~ 287 (411)
+.|+|..+....+..
T Consensus 73 r~i~V~~~~~~~~~~ 87 (90)
T 3p5t_L 73 QNPVVTPSNKLEHHH 87 (90)
T ss_dssp CCCEECCC-------
T ss_pred EEEEEEECCCCcccc
Confidence 566777766554443
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=117.05 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=77.9
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...++.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.+||..|.
T Consensus 7 ~~~~~~~~l~v~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 80 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTN-EQSLEQVFSKYGQISEVV--VVKDRETQ--RSRGFGFVTFENIDDAKDAMMAMNGKSVD- 80 (102)
T ss_dssp CCCCCCSEEEEESCCTTCC-HHHHHHHHHHHSCCCEEE--ECCCSSSC--SCCSEEEEECSSHHHHHHHHHHHTTCCTT-
T ss_pred CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3456788999999999865 889999999999999998 55666676 89999999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+|+.+...+...+
T Consensus 81 ---g~~l~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 81 ---GRQIRVDQAGKSSDNRS 97 (102)
T ss_dssp ---SCCCEEEEEECCCCCCC
T ss_pred ---CeEEEEEECCCCCCCCC
Confidence 46788888887766544
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=123.83 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
++..+|||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 4 ~p~~~lfV~nL~~~~t-e~~L~~~F~~~G~i~~v~--i~~d~~tg--~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g--- 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR-ETFLKDMCRKYGEVEEVE--ILLHPRTR--KHLGLARVLFTSTRGAKETVKNLHLTSVMG--- 75 (110)
T ss_dssp SCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCcEEEEECCCCCCC-HHHHHHHHHhcCCeeEEE--EEECCCCC--ceeeEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 4677999999999865 889999999999999998 56777787 999999999999999999999999999884
Q ss_pred eceeeeeeecC
Q 015240 272 QKQIRCEMVNS 282 (411)
Q Consensus 272 EK~ikce~~~~ 282 (411)
+.|+|+++..
T Consensus 76 -r~i~V~~a~~ 85 (110)
T 3s8s_A 76 -NIIHAQLDIK 85 (110)
T ss_dssp -EECEEEECST
T ss_pred -eEEEEEECCC
Confidence 4566666543
No 25
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=6.8e-16 Score=114.50 Aligned_cols=84 Identities=23% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.+++.+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 75 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEIT-TAAIAAAFAPFGRISDAR--VVKDMATG--KSKGYGFVSFFNKWDAENAIQQMGGQWLGG-- 75 (87)
T ss_dssp ---CEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCceEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC--
Confidence 45778999999999865 889999999999999998 45566676 899999999999999999999999999874
Q ss_pred eeceeeeeeecCC
Q 015240 271 VQKQIRCEMVNSS 283 (411)
Q Consensus 271 VEK~ikce~~~~~ 283 (411)
+.++++.+..+
T Consensus 76 --~~l~v~~a~~k 86 (87)
T 3bs9_A 76 --RQIRTNWATRK 86 (87)
T ss_dssp --EECEEEEEC--
T ss_pred --eEEEEEecCCC
Confidence 56777776654
No 26
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=1.7e-15 Score=118.89 Aligned_cols=91 Identities=21% Similarity=0.354 Sum_probs=76.8
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+++-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.|||+.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 93 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFG-DQDLLQMFMPFGNVVSAK--VFIDKQTN--LSKCFGFVSYDNPVSAQAAIQSMNGFQIG- 93 (115)
T ss_dssp CCCSTTCCEEEESCCSSCC-HHHHHHHHGGGSCCSEEE--EEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred cCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEECCCCC--CcCccEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4445778999999999865 889999999999999998 55666676 99999999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+|+.+.......+
T Consensus 94 ---g~~l~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 94 ---MKRLKVQLKRSKNDSKS 110 (115)
T ss_dssp ---TEECEEECCCCSCCCCC
T ss_pred ---CEEEEEEEcCCCCcCCC
Confidence 35678888776655443
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=115.99 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..++.-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-- 80 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF-- 80 (102)
T ss_dssp SCCCCSCEEEESCCSSCC-HHHHHHHHTTTSCCCCEE--CCCCSSSC--CCSSEEEECCSSHHHHHHHHHHHTTEEET--
T ss_pred cCCCCCEEEEeCCCCCCC-HHHHHHHhhccCCEEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 345788999999999865 889999999999999998 55666676 89999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
.+.|+++.+.......+
T Consensus 81 --g~~l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 81 --GRTIRVNLAKPMRIKES 97 (102)
T ss_dssp --TEEEEEEECCCCCCCCC
T ss_pred --CcEEEEEeCCCCCCCCC
Confidence 46778888877665544
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-15 Score=114.62 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
....-+|||+|||...+ +.+|+++|..+|.|..++ ...++.|+ .+||||||+|.+.++|.++|+ +||+.|.
T Consensus 7 ~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~-~~~~~~~--- 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCG-ETELREYFKKFGVVTEVV--MIYDAEKQ--RPRGFGFITFEDEQSVDQAVN-MHFHDIM--- 77 (99)
T ss_dssp CSSCCEEEEESCCSSCC-HHHHHHHHSSSSCEEEEE--ECCCTTTC--SCCSEEEEEESSHHHHHHHHH-HCCCBSS---
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--CCCceEEEEECCHHHHHHHHH-hCCCEEC---
Confidence 35678999999999865 889999999999999998 55666676 899999999999999999999 9999987
Q ss_pred eeceeeeeeecCCCCCCC
Q 015240 271 VQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 271 VEK~ikce~~~~~S~~~~ 288 (411)
-+.|+|+.+.......+
T Consensus 78 -g~~l~V~~a~~~~~~~~ 94 (99)
T 2dgs_A 78 -GKKVEVKRAEPRDSKSS 94 (99)
T ss_dssp -SCBCEEEECCCCCCCCC
T ss_pred -CeEEEEEECCCCcccCC
Confidence 35678888877665544
No 29
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=6.3e-16 Score=135.91 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=104.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC-chH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKK-NIH 209 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~-ni~ 209 (411)
.+++|||++.|.+.+.+.+++++|.+.. .++.+.+..+...+.. .....+.+|||+|||... + .
T Consensus 134 g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-------------~~~~~~~~l~v~nlp~~~~~-~ 199 (284)
T 3smz_A 134 GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-------------PALLHSRCLCVDRLPPGFND-V 199 (284)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------------TTTTSCSEEEEECCCTTCCC-H
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------------cccCCccEEEEecCCcccCC-H
Confidence 3689999999999999999999999866 7777777655443221 123467889999999983 4 7
Q ss_pred HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 210 RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 210 kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
.+|+++|..+|.|.++++ ..++ +| .+||||||+|.+.++|.++|+.+||+.|. | +.|+|..+...
T Consensus 200 ~~l~~~f~~~G~i~~v~i--~~~~-~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g---~~l~v~~a~~~ 264 (284)
T 3smz_A 200 DALCRALSAVHSPTFCQL--ACGQ-DG--QLKGFAVLEYETAEMAEEAQQQADGLSLG-G---SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHTCSSSCCSEEEE--EECS-SC--CEEEEEEEECSSHHHHHHHHHHHTTCEET-T---EECEEEECCSS
T ss_pred HHHHHHhhCCCCeEEEEE--EECC-CC--CcccEEEEEeCCHHHHHHHHHHhCCCccC-C---eEEEEEEecCC
Confidence 899999999999999983 3343 44 88999999999999999999999999985 3 47778777554
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=116.85 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=76.8
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+++-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-- 83 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTR-ETDLQELFRPFGSISRIY--LAKDKTTG--QSKGFAFISFHRREDAARAIAGVSGFGYD-- 83 (103)
T ss_dssp CCSSSEEEEEESCCTTCC-HHHHHTTSTTTCCEEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHHHHTTTCEET--
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EeecCCCC--ceeeEEEEEECCHHHHHHHHHHcCCCeeC--
Confidence 346789999999999865 889999999999999998 55666676 89999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
.+.|+|+.+..+....+
T Consensus 84 --g~~l~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 84 --HLILNVEWAKPSTNSGP 100 (103)
T ss_dssp --TEECEEEESSCCCCSCC
T ss_pred --CcEEEEEECCCCCCCCC
Confidence 35788888877655443
No 31
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=114.99 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEE-eeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINI-IPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisI-kpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
++++-+|||+|||...+ +.+|+.+|..+|.|.++ + ...++.|| .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-- 74 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEID-EKLLYDTFSAFGVILQTPK--IMRDPDTG--NSKGYAFINFASFDASDAAIEAMNGQYLC-- 74 (96)
T ss_dssp CSCCCEEEEECCCTTCC-HHHHHHHHHTTSCBSSCCE--ECCCTTTC--SCCSEEEEEBSSHHHHHHHHHTTTTCEET--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEEE--EEEcCCCC--CcCeEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 45788999999999865 88999999999999988 7 45666676 89999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
-+.|+++.+....+.
T Consensus 75 --g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 75 --NRPITVSYAFKKDSK 89 (96)
T ss_dssp --TEECEEEESCCCCCC
T ss_pred --CEEEEEEEecccCCC
Confidence 367788887766544
No 32
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=2.3e-15 Score=115.95 Aligned_cols=93 Identities=20% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...++..+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..+..
T Consensus 8 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLD-EKDLKPLFEEFGKIYELT--VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp CCCTTCEEEEEESCCTTCC-HHHHHHHHHHHSCCCEEE--CCCCSSSC--SCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 3445788999999999865 889999999999999998 56677786 899999999999999999999999998632
Q ss_pred ceeeceeeeeeecCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~ 287 (411)
| -.+.|++..+.......
T Consensus 83 ~-~g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 83 G-MNRPIQVKPADSESRGG 100 (106)
T ss_dssp T-CSSCCEEEECCCCSCCC
T ss_pred C-CCceEEEEECCcccccC
Confidence 1 14667777777655443
No 33
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.1e-15 Score=134.27 Aligned_cols=122 Identities=13% Similarity=0.232 Sum_probs=101.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+.. .+.+.+|||+|||...+ ..
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~----------------------~~~~~~l~v~nlp~~~t-~~ 110 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL----------------------QPTDALLCVANLPPSLT-QQ 110 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE----------------------CCCSCEEEEESCCTTCC-HH
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe----------------------cCCCCEEEEcCCCCcCC-HH
Confidence 6899999999999999999999988766 555555442 22346999999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S 284 (411)
+|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+ +.++++.+....
T Consensus 111 ~l~~~f~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g----~~i~v~~a~~~~ 176 (284)
T 3smz_A 111 QFEELVRPFGSLERCF--LVYSERTG--QSKGYGFAEYMKKDSAARAKSDLLGKPLGP----RTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEECCGGG
T ss_pred HHHHHHHhcCCeeEEE--EEeeCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEECCCCC
Confidence 9999999999999998 45666676 899999999999999999999999999863 466776665443
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-15 Score=114.32 Aligned_cols=90 Identities=17% Similarity=0.306 Sum_probs=75.6
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccC-CCCCCCcccceEEEeecCHHHHHHHHHHh-CCceec
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGN-KKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIA 267 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~n-rKTgDp~CKGFAFVtf~seedA~rfIEk~-NGq~~~ 267 (411)
....+.+|||+|||...+ +.+|+.+|..+|.|.+|+ ...+ +.|| .+||||||+|.+.++|.++|+.+ ||+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQAN-QREIRELFSTFGELKTVR--LPKKMTGTG--AHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CSSCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCCCCSSSC--SSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred cCCCCCEEEEeCCCCcCC-HHHHHHHHHccCCeEEEE--EecCCCCCC--CcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 345778999999999865 889999999999999998 4455 5575 89999999999999999999999 999987
Q ss_pred cceeeceeeeeeecCCCCCCC
Q 015240 268 FGKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+++.+........
T Consensus 86 ----g~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 86 ----GRRLVLEWADSEVTVQS 102 (107)
T ss_dssp ----SCBCEEEECCCCCCCCC
T ss_pred ----CCEEEEEeCCCCCCCCC
Confidence 35778888877655443
No 35
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.6e-15 Score=114.14 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=75.2
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+..-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.|||..|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 84 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVS-EPLLWELFLQAGPVVNTH--MPKDRVTG--QHQGYGFVEFLSEEDADYAIKIMDMIKLYG- 84 (105)
T ss_dssp CCCTTTEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCSSSC--SBCSCEEEEESSHHHHHHHHHHSSSCBCSS-
T ss_pred cCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--cCCcEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence 345778999999999865 889999999999999998 55666676 899999999999999999999999999873
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
+.|+++.+......
T Consensus 85 ---~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 ---KPIRVNKASAHNKN 98 (105)
T ss_dssp ---CBCEEEETTTTSCC
T ss_pred ---eEEEEEECCCCCcC
Confidence 67788887766544
No 36
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=2.7e-15 Score=117.88 Aligned_cols=82 Identities=24% Similarity=0.401 Sum_probs=70.1
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+++-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFT-DTDLASTFLPFGNVISAK--VFIDKQTS--LSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCCCCSEEEEEECSCTTCC-HHHHHHHTTTSCEEEEEE--ECCCSSSS--CCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEeCCCCC--CcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4456789999999999865 889999999999999998 55666676 899999999999999999999999999874
Q ss_pred ceeeceeeeee
Q 015240 269 GKVQKQIRCEM 279 (411)
Q Consensus 269 gKVEK~ikce~ 279 (411)
+.|+|+.
T Consensus 110 ----~~l~V~~ 116 (118)
T 2khc_A 110 ----KRLKVQL 116 (118)
T ss_dssp ----EECCEEE
T ss_pred ----EEEEEEe
Confidence 3455544
No 37
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3e-15 Score=116.83 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=74.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCee--------EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII--------NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS 262 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi--------sIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N 262 (411)
...+-+|||+|||...+ +.+|+++|..+|.|. .|+ ...++.|| .+||||||+|.+.++|.++|+.||
T Consensus 12 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVT-LDDLADFFKQCGVVKMNKRTGQPMIH--IYLDKETG--KPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCEEEEECCCTTCC-HHHHHHHHTTTSCBCBCSSSCCBSEE--CCBCTTTC--SBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCCCCCCC-HHHHHHHHHhcCCEeEccccCccCEE--EEEeCCCC--CeeeEEEEEECCHHHHHHHHHHcC
Confidence 45678999999999865 889999999999998 476 55677786 899999999999999999999999
Q ss_pred CceeccceeeceeeeeeecCCCCCC
Q 015240 263 RQIIAFGKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 263 Gq~~~fgKVEK~ikce~~~~~S~~~ 287 (411)
|+.|.+ +.|+++.+.......
T Consensus 87 g~~~~g----~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 87 GKDFQG----SKLKVSLARKKPPMN 107 (113)
T ss_dssp TCEETT----EECEEECSSCCCCST
T ss_pred CCccCC----CEEEEEECCCCCCCC
Confidence 999873 567888877665543
No 38
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=3e-15 Score=112.40 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=74.2
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+...+++.+|||+|||...+ ..+|+.+|..+|.|.+|++.. +|| .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~v~~~~i~~----~~g--~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFT-WKMLKDKFNECGHVLYADIKM----ENG--KSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCC-HHHHHHHHHTTSCEEEEEEEE----SSS--CEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEEc----cCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34557889999999999865 889999999999999998543 365 88999999999999999999999999977
Q ss_pred cceeeceeeeeeecCCCCC
Q 015240 268 FGKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~~ 286 (411)
-+.|+|+.+......
T Consensus 75 ----g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 75 ----GREIDVRIDRNASGP 89 (92)
T ss_dssp ----TBCCCCEECSCCSSC
T ss_pred ----CcEEEEEEcCCCCCC
Confidence 357788887766544
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6e-15 Score=114.14 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC-----
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS----- 262 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N----- 262 (411)
+....++-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 83 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSE-EEALGEVLQQFGDLKYVR--VVLHPDTE--HSKGCAFAQFMTQEAAQKCLAAASLEAEG 83 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCSSSC--CBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred CCcCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CCccEEEEEECCHHHHHHHHHHhcccccc
Confidence 34445788999999999865 889999999999999998 55666686 899999999999999999999999
Q ss_pred -CceeccceeeceeeeeeecCCCCCC
Q 015240 263 -RQIIAFGKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 263 -Gq~~~fgKVEK~ikce~~~~~S~~~ 287 (411)
|+.|.+ +.|+++.+..+....
T Consensus 84 ~~~~~~g----~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 84 GGLKLDG----RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CCEESSS----CEEEEECCCCCCCCC
T ss_pred CCcEEcC----EEEEEEECCCCccCC
Confidence 999863 567777776654433
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=8.4e-16 Score=118.51 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=69.1
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh-CCceecccee
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIAFGKV 271 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~-NGq~~~fgKV 271 (411)
+.+|||+|||...+ +.||+++|+.+| .|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+ ||..|. |
T Consensus 1 S~~i~v~nLp~~~t-e~~l~~~F~~~G~~v~~v~--i~~d~~t~--~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~-g-- 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT-EDDIRGQLQSHGVQAREVR--LMRNKSSG--QSRGFAFVEFSHLQDATRWMEANQHSLNIL-G-- 72 (91)
T ss_dssp CCEEEEETCCSSCC-HHHHHHHHHHHTCCCSBCC--SSSCSSSC--CCSSEEEEECSSHHHHHHHHHTTTTEEEET-T--
T ss_pred CCEEEEeCCCCCCC-HHHHHHHHHHhCCEeEEEE--EEecCCCC--CcCceEEEEecCHHHHHHHHHhcCCCeEEC-C--
Confidence 35899999999865 889999999999 798998 66788887 99999999999999999999986 455555 3
Q ss_pred eceeeeeeecCCCC
Q 015240 272 QKQIRCEMVNSSSS 285 (411)
Q Consensus 272 EK~ikce~~~~~S~ 285 (411)
+.|+|+.+++++.
T Consensus 73 -r~i~V~~a~~~~~ 85 (91)
T 2lxi_A 73 -QKVSMHYSDPKPK 85 (91)
T ss_dssp -EEEEEECCCSCCC
T ss_pred -EEEEEEEcCCCCC
Confidence 5678877765543
No 41
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3e-15 Score=112.63 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+++-+|||+|||...+ ..+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t-~~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTT-ERDLREVFSKYGPIADVS--IVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CSCCGGGCEEEESCCSSCC-HHHHHHHHHTTSCEEEEE--EEECSSSS--SEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeeEEE--EEEcCCCC--CcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3346788999999999865 889999999999999998 45566676 889999999999999999999999999873
Q ss_pred ceeeceeeeeeecC
Q 015240 269 GKVQKQIRCEMVNS 282 (411)
Q Consensus 269 gKVEK~ikce~~~~ 282 (411)
+.|+++.+.+
T Consensus 85 ----~~l~v~~a~~ 94 (95)
T 2cqc_A 85 ----RRIRVSGPSS 94 (95)
T ss_dssp ----EEEEEECCSC
T ss_pred ----EEEEEEecCC
Confidence 5666666553
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.62 E-value=2.7e-15 Score=110.42 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
+.+|||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+ +
T Consensus 1 t~~l~V~nlp~~~t-~~~l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~ 71 (83)
T 3md1_A 1 TFNLFVGDLNVNVD-DETLRNAFKDFPSYLSGH--VMWDMQTG--SSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----R 71 (83)
T ss_dssp CEEEEEECCCTTCC-HHHHHHHHTTSTTEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHHHHTTCEETT----E
T ss_pred CeEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEEcCCCC--CccceEEEEECCHHHHHHHHHHhcCCeeCC----c
Confidence 35899999999865 889999999999999998 45566676 899999999999999999999999999873 4
Q ss_pred eeeeeeecCC
Q 015240 274 QIRCEMVNSS 283 (411)
Q Consensus 274 ~ikce~~~~~ 283 (411)
.++++.+..+
T Consensus 72 ~l~v~~a~~~ 81 (83)
T 3md1_A 72 PLRINWAAKL 81 (83)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCcC
Confidence 5667666543
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=115.00 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC-CCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK-KTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nr-KTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
++++-+|||+|||...+ +.+|+++|..+|.|.+|++....+. .|+ .+||||||+|.+.++|.++|+.|||+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~~~~~~gt~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 76 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTT-EETLKGVFSKVGAIKSCTISKKKNKAGVL--LSMGFGFVEYKKPEQAQKALKQLQGHTVD-- 76 (98)
T ss_dssp CCCCCCEEEESCCTTCC-HHHHHHHHHTTSCEEEEEEEEEECTTCCE--EEEEEEEEEESSHHHHHHHHHHSTTCEET--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEEecCCCCCCc--CcccEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence 35778999999999865 8899999999999999985443321 144 88999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+++.+.......+
T Consensus 77 --g~~l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 77 --GHKLEVRISERATKPAS 93 (98)
T ss_dssp --TEECEEECSSCSSCCCC
T ss_pred --CeEEEEEEccCCCCCCC
Confidence 35677777776655443
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=116.76 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....++-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 18 ~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEAT-EEDIHDKFAEYGEIKNIH--LNLDRRTG--YLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp CCBTTBEEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTS--SEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCEEEEeCCCCCCC-HHHHHHHHhccCCeEEEE--EEecCCCC--ceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 4446788999999999865 889999999999999998 55666686 899999999999999999999999999874
Q ss_pred ceeeceeeeeeecCC
Q 015240 269 GKVQKQIRCEMVNSS 283 (411)
Q Consensus 269 gKVEK~ikce~~~~~ 283 (411)
+.++|+.+..+
T Consensus 93 ----~~l~V~~a~~~ 103 (106)
T 1p27_B 93 ----QPISVDWCFVR 103 (106)
T ss_dssp ----SBCEEEESEES
T ss_pred ----cEEEEEeecCC
Confidence 55666666543
No 45
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=112.27 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+..-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLT-NNDLYRIFSKYGKVVKVT--IMKDKDTR--KSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp SCCCCTTSEEEESCCTTSC-HHHHHHHTTTTSCEEEEE--ECCCSSSC--CCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--CcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3446778999999999865 889999999999999998 55666676 889999999999999999999999999884
Q ss_pred ceeeceeeeeee
Q 015240 269 GKVQKQIRCEMV 280 (411)
Q Consensus 269 gKVEK~ikce~~ 280 (411)
+.++|+.+
T Consensus 86 ----~~l~v~~a 93 (94)
T 2e5h_A 86 ----RVIKASIA 93 (94)
T ss_dssp ----EEEEEEEC
T ss_pred ----cEEEEEec
Confidence 45555554
No 46
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.1e-15 Score=135.54 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=99.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+..+. ++.+|||+|||...+ ..
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~----------------------~~~~l~v~nl~~~~t-~~ 111 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT----------------------HGAALTVKNLSPVVS-NE 111 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC----------------------CSSEEEEESCCTTCC-HH
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc----------------------cCCcccccCCCCCCC-HH
Confidence 3679999999999999999999988766 55555555332 256899999999865 88
Q ss_pred HHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCC
Q 015240 211 DLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 211 DL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~ 283 (411)
+|+++|..+|.|.+|++. .+ +|| .+||||||+|.+.++|.++|+.+||..+..+..-+++.++.+...
T Consensus 112 ~l~~~F~~~G~i~~v~i~--~~-~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 112 LLEQAFSQFGPVEKAVVV--VD-DRG--RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHGGGSCEEEEEEE--EE-TTS--CEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEEEee--eC-CCC--CcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999999844 34 365 899999999999999999999997666655334567777766654
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=6.1e-15 Score=113.78 Aligned_cols=88 Identities=18% Similarity=0.370 Sum_probs=73.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....+.-+|||+|||..++ +.+|+++|..+| |.+|+ ...++.|| .+||||||+|.+.++|.++| .+||..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g-i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~- 81 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTV-QGDIDAIFKDLS-IRSVR--LVRDKDTD--KFKGFCYVEFDEVDSLKEAL-TYDGALLG- 81 (103)
T ss_dssp CCSSSCEEEEEESCCTTCC-HHHHHHHTTTSC-EEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred CCCCCCeEEEEeCCCCCCC-HHHHHHHHHhCC-ceEEE--EeecCCCC--ccceEEEEEECCHHHHHHHH-hhCCCeEC-
Confidence 3445678999999999865 889999999995 99998 55666686 89999999999999999999 89999987
Q ss_pred ceeeceeeeeeecCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~ 287 (411)
-+.|+|+.+.......
T Consensus 82 ---g~~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 82 ---DRSLRVDIAEGRKQDK 97 (103)
T ss_dssp ---TEECEEEECCCCCCCC
T ss_pred ---CeEEEEEEecCCCCCC
Confidence 3577888877665443
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=113.00 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=73.3
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....+.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++ || .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCT-KEELEEICKAHGTVKDLR--LVTNR-AG--KPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp SSCCCCSCEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--EEECT-TS--CEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EEECC-CC--CEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4456778999999999865 889999999999999998 44454 65 899999999999999999999999999873
Q ss_pred ceeeceeeeeeecCCCC
Q 015240 269 GKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~ 285 (411)
+.|+++.+....+
T Consensus 86 ----~~l~v~~a~~~~~ 98 (100)
T 2do4_A 86 ----NIIKVAISNSGPS 98 (100)
T ss_dssp ----CEEEEEECCCCSC
T ss_pred ----EEEEEEECCCCCC
Confidence 5678888776543
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2.9e-15 Score=116.43 Aligned_cols=88 Identities=17% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
.+....++-+|||+|||...+ +.+|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||..|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQ-EDEIQEKFCDYGEIKNIH--LNLDRRTG--FSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--CCBCTTTS--SBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 334556789999999999865 889999999999999998 55666676 8999999999999999999999999998
Q ss_pred ccceeeceeeeeeecCC
Q 015240 267 AFGKVQKQIRCEMVNSS 283 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~ 283 (411)
.+ +.++++.+..+
T Consensus 94 ~g----~~l~V~~a~~~ 106 (110)
T 1oo0_B 94 MG----QTIQVDWCFVK 106 (110)
T ss_dssp TT----EECEEEESEES
T ss_pred CC----cEEEEEEcccC
Confidence 74 45666666543
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=3.1e-15 Score=110.53 Aligned_cols=81 Identities=21% Similarity=0.295 Sum_probs=69.1
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.++.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 76 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELFG-- 76 (85)
T ss_dssp CCCSSEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCEEEEECCCCCCC-HHHHHHHHhccCCEEEEE--EEECCCCC--ccccEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 45778999999999865 889999999999999998 45566676 899999999999999999999999999874
Q ss_pred eeceeeeeee
Q 015240 271 VQKQIRCEMV 280 (411)
Q Consensus 271 VEK~ikce~~ 280 (411)
+.++|+.+
T Consensus 77 --~~l~v~~a 84 (85)
T 3mdf_A 77 --RTIRVNLA 84 (85)
T ss_dssp --EECEEEEC
T ss_pred --cEEEEEEc
Confidence 44555543
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=7.5e-15 Score=112.93 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+++-+|||+|||...+ +.+|+.+|..+|.|.+|++ ..++ || .+||||||+|.+.++|.++|+.+||..|.+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t-~~~l~~~F~~~G~i~~v~i--~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQS-EEDVLRLFQPFGVIDECTV--LRGP-DG--SSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp SCCCCCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEEE--EECS-SS--CEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred cCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEE--EECC-CC--CcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 345688999999999865 8899999999999999984 4444 54 8999999999999999999999999998764
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
-.+.|+++.+......
T Consensus 85 -~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 85 -ASSSLVVKFADTDKES 100 (105)
T ss_dssp -CSSCCEEEESCSSCCC
T ss_pred -CCccEEEEECccCccc
Confidence 1267888888766543
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=114.55 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE--------EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN--------IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis--------Ikpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
..+...+|||+|||...+ +.+|+++|..+|.|.+ |+ ...++.|| .+||||||+|.+.++|.++|+.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~--i~~~~~~g--~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVT-IESVADYFKQIGIIKTNKKTGQPMIN--LYTDRETG--KLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCCCCSEEEEECCCSSCC-HHHHHHHHTTTSCBCEETTTTEESEE--EEECTTTC--SEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCEeeccccccccEE--EEecCCCC--CeeeEEEEEECCHHHHHHHHHHh
Confidence 445788999999999865 8899999999999988 76 56677786 89999999999999999999999
Q ss_pred CCceeccceeeceeeeeee
Q 015240 262 SRQIIAFGKVQKQIRCEMV 280 (411)
Q Consensus 262 NGq~~~fgKVEK~ikce~~ 280 (411)
||..|.+ +.|+++.+
T Consensus 84 ~g~~~~g----~~l~V~~A 98 (99)
T 2la6_A 84 DGKEFSG----NPIKVSFA 98 (99)
T ss_dssp TTCBSSS----SBCEEEEC
T ss_pred CCCEeCC----cEEEEEec
Confidence 9999874 45555554
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=4.7e-15 Score=113.12 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=72.2
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
+-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+ +
T Consensus 2 ~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~ 72 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT-EEQILDLCSNVGPVINLK--MMFDPQTG--RSKGYAFIEFRDLESSASAVRNLNGYQLGS----R 72 (96)
T ss_dssp CSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCTTTC--CBCSEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CcEEEEECCCCCCC-HHHHHHHHHhcCCEEEEE--EEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 46899999999865 889999999999999998 55666676 899999999999999999999999999874 6
Q ss_pred eeeeeeecCCCC
Q 015240 274 QIRCEMVNSSSS 285 (411)
Q Consensus 274 ~ikce~~~~~S~ 285 (411)
.++|+.+...+.
T Consensus 73 ~l~V~~a~~~~~ 84 (96)
T 2x1f_A 73 FLKCGYSSNSDI 84 (96)
T ss_dssp ECEEEECSCSSG
T ss_pred EEEEEEcCCCCC
Confidence 788888776553
No 54
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=1.2e-14 Score=115.67 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
....+.+|||+|||...+ ..+|+.+|..+|.|.+|+ ...++ || .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~--i~~~~-~g--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 103 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVS-DADIQELFAEFGTLKKAA--VDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG- 103 (124)
T ss_dssp CCSSCEEEEEESCCSSCC-HHHHHHHHHTTSCCSEEE--EECCS-SS--SCCSEEEEEESSHHHHHHHHHHHTTEESSS-
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEECC-CC--CEeeEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 345788999999999865 889999999999999998 45555 65 899999999999999999999999999863
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
+.|+++.+.......+
T Consensus 104 ---~~l~V~~a~~~~~~~~ 119 (124)
T 2kt5_A 104 ---RPMDIQLVASQIDLEH 119 (124)
T ss_dssp ---CEEEEEEECCTTCCCC
T ss_pred ---cEEEEEEeCCCCCCCC
Confidence 6788888876555444
No 55
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.9e-15 Score=131.01 Aligned_cols=128 Identities=10% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCC-CC--CCC-------------CCCCC-----CCCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP-SP--KKD-------------EPKKK-----EPEDM 191 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~-n~--~k~-------------~~akk-----~~~~~ 191 (411)
.||||++.+.+.+.+++++++|.+.. .++.+.+.+++.....+ .+ ... .+-+. .....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 58999999999999999999999987 88889888776543211 10 000 00000 01123
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCe--eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI--INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv--isIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+++-+|||+|||...+ +.+|+++|..+|.| .+++ ...++ + .++|||||.|.+.++|.++|+.+||+.|.+
T Consensus 121 ~p~~~l~v~NLp~~~t-~~~L~~~F~~~G~v~~~~v~--~~~~~--~--~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT-EENFFEICDELGVKRPTSVK--VFSGK--S--ERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CCCSEEEEEEECTTCC-HHHHHHHHHHHTCCCCSEEE--ECSCC--S--SSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred CCcceEEEeCCCCCCC-HHHHHHHHHhcCCcceEEEE--EEcCC--C--CCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 5678999999999865 88999999999999 7776 33332 2 568999999999999999999999999987
No 56
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=4.8e-15 Score=130.16 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=64.0
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+.+.+|||+|||...+ +.+|+.+|..+|.|.+|++. .++ ||||||.|.+.++|.++|+.+||+.|..|
T Consensus 205 ~~~~~l~v~nl~~~~~-~~~l~~~F~~~G~i~~v~~~--~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~~g-- 272 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN-ELMLSMLFNQFPGFKEVRLV--PGR-------HDIAFVEFDNEVQAGAARDALQGFKITQN-- 272 (282)
T ss_pred CCCCEEEEeCCCCcCC-HHHHHHHHHhcCCeEEEEEe--cCC-------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC--
Confidence 4678899999999865 88999999999999999833 332 69999999999999999999999998844
Q ss_pred eceeeeeee
Q 015240 272 QKQIRCEMV 280 (411)
Q Consensus 272 EK~ikce~~ 280 (411)
+.|+|+.+
T Consensus 273 -~~l~v~~a 280 (282)
T 3pgw_A 273 -NAMKISFA 280 (282)
T ss_pred -CEEEEEEe
Confidence 46666654
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.2e-15 Score=113.83 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHH----HHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLK----SAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~----~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq 264 (411)
....++.+|||+|||...+ +.+|+ .+|..+|.|.+|+ ...++.| ||||||+|.+.++|.++|+.+||.
T Consensus 4 ~~~~~~~~l~V~nL~~~~~-~~~l~~~l~~~F~~~G~v~~v~--i~~~~~~-----rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLS-RKELQQLLQEAFARHGKVKSVE--LSPHTDY-----QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp CCCSSCEEEEEESCCTTSC-HHHHHHHHHHHHHHHSCEEEEE--ECSCCST-----TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCCEEEEECCCCCCC-HHHHHHHHHHhccccCcEEEEE--EEeCCCC-----CeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456788999999999865 88999 9999999999998 4555544 899999999999999999999999
Q ss_pred eeccceeeceeeeeeecCCCCCC
Q 015240 265 IIAFGKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 265 ~~~fgKVEK~ikce~~~~~S~~~ 287 (411)
.|. -+.|+++.+...+..+
T Consensus 76 ~~~----gr~l~V~~a~~~~~~~ 94 (96)
T 2dgx_A 76 KIG----SKKILVSLATGASGPS 94 (96)
T ss_dssp EET----TEEEEEEECCCSSCCC
T ss_pred EEC----CeEEEEEEcCCCCCCC
Confidence 987 3578888887665443
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=5e-15 Score=117.56 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=75.3
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+....++.+|||+|||..++ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.|||..|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEAT-EEDIHDKFAEYGEIKNIH--LNLDRRTG--YLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--CCBCTTTS--SBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34556788999999999865 889999999999999998 55565576 89999999999999999999999999987
Q ss_pred cceeeceeeeeeecCCCCC
Q 015240 268 FGKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~~ 286 (411)
+ +.|+|+.+......
T Consensus 91 g----~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 91 G----QPISVDWCFVRGPP 105 (126)
T ss_dssp S----SBCEEEESEESSSC
T ss_pred C----eEEEEEEecCCCCC
Confidence 4 56677777655443
No 59
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.3e-15 Score=114.50 Aligned_cols=89 Identities=16% Similarity=0.307 Sum_probs=74.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....+..+|||+|||...+ ..+|+.+|..+|.|.+++ ...++ || .+||||||+|.+.++|.++|+.+||+.|..
T Consensus 20 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMD-EQELENMLKPFGQVISTR--ILRDS-SG--TSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCCCCTTEEEEESCCTTCC-HHHHHHTTTTTSCEEEEE--EEECS-SS--CEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEECC-CC--CcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 3445778999999999865 889999999999999998 44555 65 899999999999999999999999999875
Q ss_pred ce----eeceeeeeeecCC
Q 015240 269 GK----VQKQIRCEMVNSS 283 (411)
Q Consensus 269 gK----VEK~ikce~~~~~ 283 (411)
.+ --++++|..++..
T Consensus 94 ~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CTTSCCCSSCBEEEECCCS
T ss_pred CccccCCCCceeEEccCCC
Confidence 33 3577888887743
No 60
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=8.3e-15 Score=122.16 Aligned_cols=134 Identities=12% Similarity=0.148 Sum_probs=101.1
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCC----C-----------C-----CCCCCCCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKD----E-----------P-----KKKEPEDMP 192 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~----~-----------~-----akk~~~~~~ 192 (411)
++|||++.|.+.+.++++++.|.+.. .++.+.+..++..+... ++.. . + ........+
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 118 (198)
T 1qm9_A 40 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL-PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 118 (198)
T ss_dssp CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCC-SSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCC-CCcCCccccccccccCCchhhccCccccccccCCC
Confidence 38999999999999999999999876 77888887766543211 1100 0 0 001112345
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
++.+|||+|||...+ ..+|+++|..+| .|.+|++ ..+ .||||||+|.+.++|.++|+.+||+.|..|
T Consensus 119 ~~~~l~v~nl~~~~~-~~~l~~~f~~~G~~v~~v~i--~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-- 186 (198)
T 1qm9_A 119 PSATLHLSNIPPSVS-EEDLKVLFSSNGGVVKGFKF--FQK-------DRKMALIQMGSVEEAVQALIDLHNHDLGEN-- 186 (198)
T ss_dssp CCCEEEECCCCTTCC-HHHHHHHHHHTTSCCCEEEE--SST-------TSSCEEEECSSHHHHHHHHHHHTSSCCSSC--
T ss_pred CccEEEEeCCCCCCC-HHHHHHHHHHcCCCceEEEE--EeC-------CCcEEEEEeCCHHHHHHHHHHhcCCccCCC--
Confidence 789999999999865 889999999999 8988873 222 189999999999999999999999998644
Q ss_pred eceeeeeeec
Q 015240 272 QKQIRCEMVN 281 (411)
Q Consensus 272 EK~ikce~~~ 281 (411)
+.++++.+.
T Consensus 187 -~~l~v~~a~ 195 (198)
T 1qm9_A 187 -HHLRVSFSK 195 (198)
T ss_dssp -CSCCEEEEC
T ss_pred -CeEEEEeec
Confidence 456666654
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.4e-15 Score=113.67 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=74.7
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..++.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+. ||+.|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~a~~~-~~~~~~g- 84 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTT-QETLRSYFSQYGEVVDCV--IMKDKTTN--QSRGFGFVKFKDPNCVGTVLAS-RPHTLDG- 84 (105)
T ss_dssp CSSSSSEECCBSCCTTCC-HHHHHHHHHTTSCEEEEE--EEECSSSC--CEEEEEEEEESSTTHHHHHHHH-CSEEETT-
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EeeCCCCC--CcceEEEEEECCHHHHHHHHHh-CCCeECC-
Confidence 345778999999999865 889999999999999998 55666686 8999999999999999999999 9999874
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
+.|+|+.+.......+
T Consensus 85 ---~~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 85 ---RNIDPKPCTPRGMQPS 100 (105)
T ss_dssp ---EEEBCCCSCCSSCCTT
T ss_pred ---EEEEEEEccCCCCCCC
Confidence 5677777766654443
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=2e-15 Score=117.53 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=68.4
Q ss_pred CccEEEEcCCCC------CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 193 SGIRVRLLNLPK------KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 193 dgvRVrVGNLPk------k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
.+-+|||+|||. ... ..+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~-~~~L~~~F~~~G~i~~v~--i~~d~~tg--~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVL-KKALTSLFSKAGKVVNME--FPIDEATG--KTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHH-HHHHHHHHHTTSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cCcEEEEeCCCcCChHHHHHH-HHHHHHHHHhcCCEeEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 467899999999 642 779999999999999998 55666787 9999999999999999999999999998
Q ss_pred ccceeeceeeeeeec
Q 015240 267 AFGKVQKQIRCEMVN 281 (411)
Q Consensus 267 ~fgKVEK~ikce~~~ 281 (411)
.++ +.|++..+.
T Consensus 80 ~g~---r~l~V~~a~ 91 (100)
T 3ns6_A 80 DLK---HRLFLYTMK 91 (100)
T ss_dssp SSS---CBCEEEESH
T ss_pred CCC---eEEEEEECc
Confidence 752 455665553
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=5.7e-15 Score=113.96 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=71.1
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
++...+.+-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++ || .+||||||+|.+.++|.++|+.|||+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVS-DADIQELFAEFGTLKKAA--VHYDR-SG--RSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECT-TS--CEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEECC-CC--CcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 445567889999999999865 889999999999999998 44444 65 8999999999999999999999999998
Q ss_pred ccceeeceeeeeeec
Q 015240 267 AFGKVQKQIRCEMVN 281 (411)
Q Consensus 267 ~fgKVEK~ikce~~~ 281 (411)
.+ +.|+|+.+.
T Consensus 96 ~g----~~l~V~~a~ 106 (107)
T 3ulh_A 96 DG----RPMNIQLVT 106 (107)
T ss_dssp TT----EECEEEEEC
T ss_pred CC----cEEEEEEeC
Confidence 74 566776654
No 64
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=111.98 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=65.2
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.+++-+|||+|||...+ +.+|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t-~~~l~~~f~~~G~i~~~~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTT-DQDLVKLCQPYGKIVSTK--AILDKTTN--KCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCCEEEEESCCTTCC-HHHHHTTSTTTSCEEEEE--EECCSSSC--SCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 35678999999999865 889999999999999998 55566676 889999999999999999999999999875
No 65
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.8e-15 Score=114.18 Aligned_cols=88 Identities=22% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCe----eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI----INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv----isIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG 263 (411)
....+++-+|||+|||...+ +.+|+++|..+|.| +.+++. || .+||||||+|.+.++|.++|+.|||
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~v~~~~~~~~~~------~g--~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVT-ERDLVSLFARFQEKKGPPIQFRMM------TG--RMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCC-HHHHHHHTHHHHHSSSSCCEEEEE------CS--SSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred cCCCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCccceEEEEEcC------CC--ccceEEEEEECCHHHHHHHHHHhCC
Confidence 34456789999999999865 88999999999998 444422 54 7899999999999999999999999
Q ss_pred ceeccceeeceeeeeeecCCCCCCC
Q 015240 264 QIIAFGKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 264 q~~~fgKVEK~ikce~~~~~S~~~~ 288 (411)
..|. -+.|+|+.+.......+
T Consensus 90 ~~~~----g~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 90 YKLY----GKILVIEFGKNKKQRSS 110 (115)
T ss_dssp CBCS----SCBCEEEECCCCSCCCC
T ss_pred CEeC----CcEEEEEEccCCCCCCC
Confidence 9985 46788888877665554
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=113.81 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=74.0
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
+......-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.+|| .|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTT-DASLRKYFEGFGDIEEAV--VITDRQTG--KSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCC-HHHHHHHHHTTSCEEEEE--ESCCSSSC--CCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CcCCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeeEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 34445778999999999865 889999999999999998 55666686 8999999999999999999999998 665
Q ss_pred cceeeceeeeeeecCCCCC
Q 015240 268 FGKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~~ 286 (411)
-+.|+++.+......
T Consensus 85 ----g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 85 ----GRKANVNLAYLGAKP 99 (116)
T ss_dssp ----TEECEEEESTTTCCC
T ss_pred ----CEEEEEEEcccCCCc
Confidence 367788887655433
No 67
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=111.89 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=72.0
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCC-CCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKT-KDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKT-gDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+...+|||+|||...+ +.+|+.+|..+| |.+|+ ...++.| | .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G-i~~v~--i~~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVT-EESIKEFFRGLN-ISAVR--LPREPSNPE--RLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CSSSCEEEEEESCCSSCC-HHHHHHHTTTSC-EEEEE--CCBCSSCTT--SBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCEEEEeCCCCcCC-HHHHHHHHHHCC-ceEEE--EecCCCCCC--CcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 345678999999999865 889999999999 99998 5566666 5 89999999999999999999 999999873
Q ss_pred ceeeceeeeeeecCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~ 286 (411)
+.|+++.+......
T Consensus 84 ----~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 ----KRIRVDVADQAQDK 97 (104)
T ss_dssp ----EECEEEECCCCCCC
T ss_pred ----cEEEEEEccCCCCC
Confidence 56777777665443
No 68
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=113.41 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+..-+|||+|||...+ +.+|+.+|..+|.|..++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 13 ~~~~~l~v~nLp~~~t-~~~l~~~F~~~G~v~~~~--~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--- 84 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVS-IDEILDFFYGYQVIPGSV--CLKYNEKG--MPTGEAMVAFESRDEATAAVIDLNDRPIGS--- 84 (98)
T ss_dssp CSSEEEEEESCCTTCC-HHHHHHHTTTSCCCTTTC--EEEECSSS--CEEEEEEEEESCHHHHHHHHHHTTTCEETT---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHcCCccceE--EEEECCCC--CeeeEEEEEECCHHHHHHHHHHhCCCeeCC---
Confidence 4567999999999865 889999999999987665 44556676 899999999999999999999999999874
Q ss_pred eceeeeeeecCCCC
Q 015240 272 QKQIRCEMVNSSSS 285 (411)
Q Consensus 272 EK~ikce~~~~~S~ 285 (411)
+.|+++.+...++
T Consensus 85 -~~l~V~~a~~~~s 97 (98)
T 2cqp_A 85 -RKVKLVLGSGPSS 97 (98)
T ss_dssp -EECEEEESSCSSC
T ss_pred -eEEEEEEcCCCCC
Confidence 6678887765543
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.4e-15 Score=112.22 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhcc-CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce-ecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKG-VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI-IAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~-vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~-~~f 268 (411)
...+.+|||+|||...+ +.+|+++|.. +|.|.+|+ ...++ || .+||||||+|.+.++|.++|+.+||.. |.+
T Consensus 6 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~~G~v~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD-DGMLYEFFVKVYPSCRGGK--VVLDQ-TG--VSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp SSCCCCEEEECCCTTCC-HHHHHHHHHHHCTTEEEEE--EEECT-TC--CEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHHHHhCCCeEEEE--EEECC-CC--CccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 35678999999999865 8899999999 99999998 55565 76 899999999999999999999999999 763
Q ss_pred ceeeceeeeeeecCCCC
Q 015240 269 GKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~ 285 (411)
+.|+++.+.....
T Consensus 80 ----~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 ----KPVRLSVAIPKAS 92 (104)
T ss_dssp ----SCCCCCBCCCCCS
T ss_pred ----EeEEEEEccCCCc
Confidence 5677777755543
No 70
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=116.13 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..+.-+|||+|||...+ ..+|+++|..+|.|.+|+ ...++ || .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-- 75 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETN-EKMLKAVFGKHGPISEVL--LIKDR-TS--KSRGFAFITFENPADAKNAAKDMNGKSLHG-- 75 (116)
T ss_dssp TCSCCEEEEECCTTTCC-HHHHHHHHHTSSCCSEEE--EECST-TT--TCCCEEEEECSSHHHHHHHHHHCSSCBCSS--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEECC-CC--CcccEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 34667999999999865 889999999999999998 44454 65 899999999999999999999999999873
Q ss_pred eeceeeeeeecCCCCCCC
Q 015240 271 VQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 271 VEK~ikce~~~~~S~~~~ 288 (411)
+.|+|+.+...+....
T Consensus 76 --~~l~V~~a~~~~~~~~ 91 (116)
T 2fy1_A 76 --KAIKVEQAKKPSFQSG 91 (116)
T ss_dssp --SBCEEEECCCSSCSSS
T ss_pred --EEEEEEECCCCCCCCC
Confidence 5678888876665443
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.9e-14 Score=110.62 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=73.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
......-+|||+|||...+ +.+|+++|..+|.|.+|++. .++. .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t-~~~l~~~f~~~G~v~~v~i~--~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 81 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFR-DPDLRQMFGQFGKILDVEII--FNER----GSKGFGFVTFENSADADRAREKLHGTVVE- 81 (103)
T ss_dssp CCSCCCCEEEEESCCTTCC-HHHHHHHGGGTSCEEEEEEE--CCTT----TTCCEEEEEESCHHHHHHHHHHHTTCEET-
T ss_pred CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEE--ecCC----CCcEEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3445778999999999865 88999999999999999844 3332 27999999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+++.+..+....+
T Consensus 82 ---g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 82 ---GRKIEVNNATARVMTNS 98 (103)
T ss_dssp ---TEECEEEECCSSCCCCC
T ss_pred ---CEEEEEEEcccCCCCCC
Confidence 36688888877766554
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=110.95 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....++-+|||+|||...+ +.+|+++|..+|.|.+|++.. + || .+||||||+|.+.++|.++|+.+||..|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~i~~--~--~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 81 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGID-DERLRKAFSPFGTITSAKVMM--E--GG--RSKGFGFVCFSSPEEATKAVTEMNGRIVA- 81 (103)
T ss_dssp CCCSSCCCEEEECCCTTCC-HHHHHHTTTTTSCEEEEEEEE--C--SS--SEEEEEEEEESSHHHHHHHHHHHTTCBSS-
T ss_pred cCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEEc--C--CC--CcCEEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 3445788999999999865 889999999999999998543 3 54 88999999999999999999999999986
Q ss_pred ceeeceeeeeeecCCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+|+.+.......+
T Consensus 82 ---g~~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 82 ---TKPLYVALAQRKEERQS 98 (103)
T ss_dssp ---SSBCEEEECSSCCCCCC
T ss_pred ---CcEEEEEEecccccCCC
Confidence 36778888776655433
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=116.78 Aligned_cols=86 Identities=16% Similarity=0.240 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+++-+|||+|||...+ ..+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 22 ~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g- 95 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNIT-EDMLRGIFEPFGRIESIQ--LMMDSETG--RSKGYGFITFSDSECAKKALEQLNGFELAG- 95 (108)
T ss_dssp SCSSCEEEEEECCCSSCC-HHHHHHHHTTTSCEEEEE--EEEETTTT--EEEEEEEEEESCHHHHHHHHHHHTTCCSSS-
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEEcCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 345778999999999865 889999999999999998 44555676 899999999999999999999999999874
Q ss_pred eeeceeeeeeecCCC
Q 015240 270 KVQKQIRCEMVNSSS 284 (411)
Q Consensus 270 KVEK~ikce~~~~~S 284 (411)
+.|+|+.+..++
T Consensus 96 ---~~l~V~~a~~k~ 107 (108)
T 2jrs_A 96 ---RPMKVGHVTERT 107 (108)
T ss_dssp ---SCCEEECSCSSC
T ss_pred ---EEEEEEEcccCC
Confidence 567777776543
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=7.7e-15 Score=108.70 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..+.+|||+|||...+ +.+|+++|..+|.|.++++ ..++.|+ ..+||||||+|.+.++|.++|+.+||..|.+
T Consensus 2 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~i--~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 74 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT-KDHIMEIFSTYGKIKMIDM--PVERMHP-HLSKGYAYVEFENPDEAEKALKHMDGGQIDG--- 74 (88)
T ss_dssp CCCCEEEEECCCTTCC-HHHHHHHHHTTSCEEEEEC--CEETTEE-EEECSEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEEE--EeCCCCC-CCCCcEEEEEEecHHHHHHHHHHcCCCeECC---
Confidence 4567999999999865 8899999999999999984 4444454 2489999999999999999999999999874
Q ss_pred eceeeeeeecC
Q 015240 272 QKQIRCEMVNS 282 (411)
Q Consensus 272 EK~ikce~~~~ 282 (411)
+.++++.+..
T Consensus 75 -~~l~v~~a~~ 84 (88)
T 4a8x_A 75 -QEITATAVLA 84 (88)
T ss_dssp -EECEEEEECC
T ss_pred -eEEEEEECCC
Confidence 4566666644
No 75
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=1.3e-14 Score=125.91 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=101.3
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCC---------------CCCCC-----CCCCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKD---------------EPKKK-----EPEDMP 192 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~---------------~~akk-----~~~~~~ 192 (411)
++|||++.|.+.+.++++++.|.+.. .++.+.+..++...... ++.. .+... .....+
T Consensus 71 ~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (229)
T 2adc_A 71 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQL-PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 149 (229)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCC-CCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccC-ccccccccccccccccCcccccCCccccccccCCC
Confidence 38999999999999999999999876 77888887766542211 0100 00000 112345
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
++.+|||+|||...+ ..+|+.+|..+| .|..|+. ..+ .||||||+|.+.++|.++|+.+||..|..|
T Consensus 150 ~~~~l~V~nlp~~~t-~~~l~~~f~~~G~~i~~v~i--~~~-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g-- 217 (229)
T 2adc_A 150 PSATLHLSNIPPSVS-EEDLKVLFSSNGGVVKGFKF--FQK-------DRKMALIQMGSVEEAVQALIDLHNHDLGEN-- 217 (229)
T ss_dssp SCSEEEEECCCTTCC-HHHHHHHHHTTSCCEEEEEE--CSS-------STTCEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred CCCEEEEeCCCccCC-HHHHHHHHHHcCCCeeEEEE--EEC-------CCcEEEEEECCHHHHHHHHHHHCCCccCCC--
Confidence 689999999999865 889999999999 9988873 221 289999999999999999999999998734
Q ss_pred eceeeeeeecC
Q 015240 272 QKQIRCEMVNS 282 (411)
Q Consensus 272 EK~ikce~~~~ 282 (411)
+.|+|..+.+
T Consensus 218 -~~l~v~~a~~ 227 (229)
T 2adc_A 218 -HHLRVSFSKS 227 (229)
T ss_dssp -CBCEEEECSS
T ss_pred -CeEEEEEecC
Confidence 3566666543
No 76
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=8.3e-15 Score=118.63 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE--EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc----
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN--IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ---- 264 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis--Ikpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq---- 264 (411)
....-+|||+|||...+ +.+|+++|..+|.|.. |+ ...++.|| .+||||||+|.+. +|.++|+.+||.
T Consensus 20 ~~~~~~lfV~nL~~~~t-e~~L~~~F~~~G~v~~~~v~--i~~d~~tg--~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 20 ENANDTIILRNLNPHST-MDSILGALAPYAVLSSSNVR--VIKDKQTQ--LNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp SCCCCEEEECSCCTTCC-SHHHHHHHGGGCCCCTTTEE--CCBCSSSS--SBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcceeeEE--EEEcCCCC--CcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 35677999999999865 8899999999999966 76 66777787 9999999999999 999999999999
Q ss_pred eeccceeeceeeeeeecCCCC
Q 015240 265 IIAFGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 265 ~~~fgKVEK~ikce~~~~~S~ 285 (411)
.|.+ +.|+++.+..+..
T Consensus 94 ~~~g----r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDG----KTINVEFAKGSKR 110 (131)
T ss_dssp CGGG----CCCCCEECCCSCC
T ss_pred cCCC----EEEEEEECCCCCC
Confidence 7663 5667777766533
No 77
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-14 Score=115.37 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
...-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.
T Consensus 40 ~~~~~l~V~nLp~~~~-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---- 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD-EVQLRQLFERYGPIESVK--IVCDRETR--QSRGYGFVKFQSGSSAQQAIAGLNGFNIL---- 110 (139)
T ss_dssp TTTSEEEEESCSTTCC-HHHHHHHHHHHSCEEEEE--EEEETTTT--EEEEEEEEEESSHHHHHHHHHHTTTEECS----
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEEcCCCC--CcceEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence 4678999999999865 889999999999999998 45566676 89999999999999999999999999987
Q ss_pred eceeeeeeecCCCCCC
Q 015240 272 QKQIRCEMVNSSSSNS 287 (411)
Q Consensus 272 EK~ikce~~~~~S~~~ 287 (411)
-+.|+|+.+.......
T Consensus 111 g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 111 NKRLKVALAASGHQRP 126 (139)
T ss_dssp SCEEEEEESSCCCCCC
T ss_pred CeEEEEEECCCCCCCC
Confidence 3577888887765543
No 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=112.17 Aligned_cols=89 Identities=19% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCC-eeEEeeccc-cCCCCCCCcccceEEEeecCHHHHHHHHHHhC-C-ce
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG-IINIIPVVS-GNKKTKDPICKGFAFVDFESEDYATRFVQLFS-R-QI 265 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg-visIkpav~-~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N-G-q~ 265 (411)
.+++.-+|||+|||...+ +.+|+.+|..+|. |.+++ .. .++.|| .+||||||+|.+.++|.++|+.+| | +.
T Consensus 4 ~s~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~~v~~v~--i~~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKK-REEILEEIAKVTEGVLDVI--VYASAADKM--KNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CCCCSEEEEEECCCTTSC-HHHHHHHHHHHSTTEEEEE--CCSSSCTTT--TTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred cccCCCEEEEeCCCCcCC-HHHHHHHHHHhcCCceEEE--EEccCCCCC--CcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 356788999999999865 8899999999998 99997 44 566676 899999999999999999999995 4 77
Q ss_pred eccceeeceeeeeeecCCCCCC
Q 015240 266 IAFGKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 266 ~~fgKVEK~ikce~~~~~S~~~ 287 (411)
|.+ +.|+++.+.......
T Consensus 79 ~~g----~~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 79 LWG----HQIAVDWAEPEIDVD 96 (109)
T ss_dssp BTT----BCCEEEESCSSCSTT
T ss_pred ecC----CeEEEEEcCCCCCcC
Confidence 663 567888887665443
No 79
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=110.79 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=70.8
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.....+-+|||+|||...+ +.+|+.+|..+|.|.+|++ ..++ || .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~-~~~l~~~f~~~G~i~~~~i--~~~~-~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVG-WKKLKEVFSMAGVVVRADI--LEDK-DG--KSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCCCCSCEEEESCCTTCC-HHHHHHHHTTTSCEEEEEE--EECT-TC--SEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEE--EECC-CC--CeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3445678999999999865 8899999999999999984 3443 44 899999999999999999999999999873
Q ss_pred ceeeceeeeeeecCC
Q 015240 269 GKVQKQIRCEMVNSS 283 (411)
Q Consensus 269 gKVEK~ikce~~~~~ 283 (411)
+.|+|+.+...
T Consensus 84 ----~~l~v~~a~~~ 94 (114)
T 2do0_A 84 ----RPMHVKMDERA 94 (114)
T ss_dssp ----EECEEEECSCC
T ss_pred ----CEEEEEEcccC
Confidence 56777776543
No 80
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=9.8e-15 Score=108.67 Aligned_cols=81 Identities=15% Similarity=0.271 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
++-+|||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 5 ~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~-~~~g~~~~g---- 74 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT-AEELEAHFHGCGSVNRVT--ILCDKFSG--HPKGFAYIEFSDKESVRTSL-ALDESLFRG---- 74 (89)
T ss_dssp HHTEEEEESCCTTCC-HHHHHHHHGGGCCEEEEE--EEESCSSS--SCCEEEEEEESSTHHHHHHG-GGTTCEETT----
T ss_pred cCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEecCCCC--CcceEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence 356899999999865 889999999999999998 45565576 89999999999999999999 999999874
Q ss_pred ceeeeeeecCC
Q 015240 273 KQIRCEMVNSS 283 (411)
Q Consensus 273 K~ikce~~~~~ 283 (411)
+.|+|+.+...
T Consensus 75 ~~l~V~~a~~~ 85 (89)
T 3ucg_A 75 RQIKVIPKRTN 85 (89)
T ss_dssp EECEEEETTTT
T ss_pred cEEEEEEccCC
Confidence 45667666543
No 81
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=6.6e-15 Score=117.15 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=66.5
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
..+|||+|||...+ +.+|+++|..+|.|.++++.. ++. .+||||||+|.+.++|.++|+.|||+.|.+ +
T Consensus 5 ~~~lfV~nLp~~~t-e~~L~~~F~~~G~v~~v~i~~--d~~----~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~ 73 (115)
T 4f25_A 5 SGNIFIKNLDKSID-NKALYDTFSAFGNILSCKVVC--DEN----GSKGYGFVHFETQEAAERAIEKMNGMLLND----R 73 (115)
T ss_dssp CCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEEE--ETT----EEEEEEEEEESCHHHHHHHHHHHTTCEETT----E
T ss_pred CCEEEECCCCCCCC-HHHHHHHHhccCCEEEEEEee--cCC----CCCceEEEEECCHHHHHHHHHHcCCCEECC----E
Confidence 34799999999865 889999999999999998543 432 369999999999999999999999999874 4
Q ss_pred eeeeeeecCCC
Q 015240 274 QIRCEMVNSSS 284 (411)
Q Consensus 274 ~ikce~~~~~S 284 (411)
.|+|+.+..+.
T Consensus 74 ~i~V~~a~~~~ 84 (115)
T 4f25_A 74 KVFVGRFKSRK 84 (115)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCcc
Confidence 66777765543
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=5.6e-15 Score=107.56 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=60.1
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+|||+|||...+ +.+|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++++ +||+.|.+
T Consensus 1 ~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 1 KIFVGGLSVNTT-VEDVKHYFEQFGKVDDAM--LMFDKTTN--RHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCC-HHHHHHHHHTTSCCSEEC--CCBCSSST--TSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred CEEEecCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--CcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 699999999865 889999999999999998 45566676 899999999999999999998 89999875
No 83
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=108.54 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=71.1
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...++.-+|||+|||...+ +.+|+.+|..+|.|.++++ +||||||+|.+.++|.++|+.+||..|.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~~------------~~g~afV~f~~~~~A~~A~~~l~g~~~~- 68 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREAT-EQEIRSLFEQYGKVLECDI------------IKNYGFVHIEDKTAAEDAIRNLHHYKLH- 68 (90)
T ss_dssp SCSSCCEEEEEESCCSSCC-HHHHHHHHHTSSCEEEEEE------------ETTEEEEEESSHHHHHHHHHHHTTCBCS-
T ss_pred CCCCCCeEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEEE------------ECCEEEEEECCHHHHHHHHHHhcCCccC-
Confidence 3456778999999999865 8899999999999999973 3899999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~~ 288 (411)
.+.|+|+.+..++...+
T Consensus 69 ---g~~l~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 69 ---GVNINVEASKNKSKASS 85 (90)
T ss_dssp ---SCBCEEECSSCCCCCCS
T ss_pred ---CcEEEEEECCCCCCCCC
Confidence 46788888877766544
No 84
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=115.96 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=69.2
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCC--eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec-
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG--IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA- 267 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg--visIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~- 267 (411)
...=.+|||+|||..++ +.+|+++|+.+|. +.+|+ ...|+.|| .+||||||+|.+.++|.++|+.+||....
T Consensus 6 ~~~m~tlfV~nL~~~~t-ee~L~~~F~~~G~i~v~~v~--i~~d~~tg--~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTV-VDSIMTALSPYASLAVNNIR--LIKDKQTQ--QNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp SCCCCEEEEESCCTTCC-HHHHHHHSTTTCCCCGGGEE--CCCCSSSS--SCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred CCccCEEEEeCCCCcCC-HHHHHHHHHhhCCccEEEEE--EEecCCCC--CCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 34456899999999875 8899999999995 56776 66788897 99999999999999999999999998522
Q ss_pred --cceeeceeeeeeecC
Q 015240 268 --FGKVQKQIRCEMVNS 282 (411)
Q Consensus 268 --fgKVEK~ikce~~~~ 282 (411)
.| +.++++.+.+
T Consensus 81 ~i~G---r~i~V~~Aks 94 (95)
T 2lkz_A 81 KIDG---KTIGVDFAKS 94 (95)
T ss_dssp EETT---EEEEEEECCC
T ss_pred eECC---EEEEEEEccC
Confidence 14 5677777653
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-14 Score=113.88 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 188 PEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 188 ~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
....++.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVD-DKVLHAAFIPFGDITDIQ--IPLDYETE--KHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--CCCCTTTC--CCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCCCCcEEEEEeCCCCCC-HHHHHHHHHhcCCEEEEE--EeecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34456889999999999865 889999999999999998 55666676 88999999999999999999999999987
Q ss_pred c
Q 015240 268 F 268 (411)
Q Consensus 268 f 268 (411)
+
T Consensus 132 g 132 (140)
T 2ku7_A 132 G 132 (140)
T ss_dssp T
T ss_pred C
Confidence 5
No 86
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=4e-15 Score=132.98 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=68.7
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
...+|||+|||..++ +.+|+++|..+| .|++|+ ...++.|| .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus 67 ~~~~lfVgnL~~~~t-e~~L~~~F~~~G~~~v~~v~--i~~d~~tg--~skGfaFV~f~~~~~a~~Ai~~lng~~~~G-- 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT-DEDLTEAVHSLGVNDILEIK--FFENRANG--QSKGFALVGVGSEASSKKLMDLLPKRELHG-- 139 (229)
T ss_dssp --CEEEEESCCTTCC-HHHHHHHHHTTTCCCEEEEE--EEECTTTC--CEEEEEEEEESCTTHHHHHHTTSTTSCBTT--
T ss_pred CccEEEEeCCCCCCC-HHHHHHHHHHHCCcceEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCeECC--
Confidence 667999999999865 889999999999 999998 66777787 999999999999999999999999999884
Q ss_pred eeceeeeeeec
Q 015240 271 VQKQIRCEMVN 281 (411)
Q Consensus 271 VEK~ikce~~~ 281 (411)
+.|+|.++.
T Consensus 140 --r~l~V~~a~ 148 (229)
T 3q2s_C 140 --QNPVVTPVN 148 (229)
T ss_dssp --BCCEEEECC
T ss_pred --EEeEEEECC
Confidence 455666553
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.6e-15 Score=112.39 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
..-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 7 ~~~~l~V~nlp~~~~-~~~l~~~f~~~G~i~~~~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEAT-EEQLKDIFSEVGPVVSFR--LVYDRETG--KPKGYGFCEYQDQETALSAMRNLNGREFSG---- 77 (104)
T ss_dssp HHSCEEEESCCTTSC-HHHHHHHHHTTSCCSEEE--EEEETTTT--EEEEEEEEECSCHHHHHHHHHHSSSBSCSS----
T ss_pred CccEEEEeCCCCcCC-HHHHHHHHHhcCCeeEEE--EEeCCCCC--ccceEEEEEECCHHHHHHHHHHhCCCeeCC----
Confidence 457899999999865 889999999999999998 45555576 899999999999999999999999999863
Q ss_pred ceeeeeeecCCC
Q 015240 273 KQIRCEMVNSSS 284 (411)
Q Consensus 273 K~ikce~~~~~S 284 (411)
+.++|+.+....
T Consensus 78 ~~l~v~~a~~~~ 89 (104)
T 1p1t_A 78 RALRVDNAASEK 89 (104)
T ss_dssp SCBEEEETTCTT
T ss_pred cEEEEEeCCCcc
Confidence 567777766543
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=112.47 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCc-----hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 192 PSGIRVRLLNLPKKKN-----IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~n-----i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
..+-+|||+|||.... ...+|+.+|..+|.|.+|++. +.|| .+||||||+|.+.++|.++|+.+||+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~----~~~g--~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP----EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC----CBTT--BSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee----CCCC--CeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3467999999999753 357999999999999999854 4676 8999999999999999999999999998
Q ss_pred ccceeec-eeeeeeecCC
Q 015240 267 AFGKVQK-QIRCEMVNSS 283 (411)
Q Consensus 267 ~fgKVEK-~ikce~~~~~ 283 (411)
.+ + .|+++.+...
T Consensus 87 ~g----~~~l~V~~a~~~ 100 (105)
T 2nlw_A 87 DK----QHTFRVNLFTDF 100 (105)
T ss_dssp ST----TCEEEEECSCCC
T ss_pred CC----CceEEEEEcchH
Confidence 73 3 5677766543
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=5.3e-15 Score=111.61 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+..-+|||+|||...+ +.||+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~~~--~~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--- 84 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS-IDEILDFFYGYQVIPGSV--CLKYNEKG--MPTGEAMVAFESRDEATAAVIDLNDRPIGS--- 84 (95)
T ss_dssp --CEEEEEECCCTTCC-HHHHHHHTTTSCBCTTCC--EEEECTTS--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCccceE--EEEeCCCC--CEeeEEEEEECCHHHHHHHHHHhCCCeECC---
Confidence 3458999999999865 889999999999998776 44556676 899999999999999999999999999874
Q ss_pred eceeeeeeec
Q 015240 272 QKQIRCEMVN 281 (411)
Q Consensus 272 EK~ikce~~~ 281 (411)
+.|+++.+.
T Consensus 85 -r~l~v~~a~ 93 (95)
T 2ek1_A 85 -RKVKLSGPS 93 (95)
T ss_dssp -EECEEECCC
T ss_pred -cEEEEEecc
Confidence 455555543
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=1.4e-14 Score=108.05 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=62.5
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+.-+|||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+. +|+.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~-~~~~~~g 79 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTS-KKDLKDYFTKFGEVVDCT--IKMDPNTG--RSRGFGFILFKDAASVEKVLDQ-KEHRLDG 79 (87)
T ss_dssp CSCTTEEEEECCCTTCC-HHHHHHHHTTTSCEEEEE--EEECTTTC--CEEEEEEEEESSTHHHHHHHHS-SCEEETT
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EeecCCCC--ccccEEEEEECCHHHHHHHHHh-CCCEECC
Confidence 35678999999999865 889999999999999998 45566676 8999999999999999999975 8887764
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=113.17 Aligned_cols=87 Identities=13% Similarity=0.151 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
....-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+. ||+.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-- 95 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETT-EESLRNYYEQWGKLTDCV--VMRDPASK--RSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-- 95 (116)
T ss_dssp HHHHTEEEEECCTTCCC-HHHHHHHHTSSCCCSEEE--EECCTTTS--SCCSEEEEECSSHHHHHHHHTS-CSEEETT--
T ss_pred cCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEECCCCC--CcCceEEEEeCCHHHHHHHHHh-CCcEECC--
Confidence 34678999999999865 889999999999999998 55666686 8999999999999999999998 9999873
Q ss_pred eeceeeeeeecCCCCCC
Q 015240 271 VQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 271 VEK~ikce~~~~~S~~~ 287 (411)
+.|+|+.+..+....
T Consensus 96 --~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 96 --RVVEPKRAVAREESG 110 (116)
T ss_dssp --EEEEEECCSSCCCCC
T ss_pred --EEEEEEECCCCccCC
Confidence 567777776665443
No 92
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.3e-14 Score=109.36 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=71.6
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.....-+|||+|||...+ +.+|+.+|..+|.|.+|++. .++.+ .||||||+|.+.++|.++|+.+||+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~i~--~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 81 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVT-EVLILQLFSQIGPCKSCKMI--TEHTS----NDPYCFVEFYEHRDAAAALAAMNGRKIL-- 81 (103)
T ss_dssp CSCCCCEEEEESCCTTCC-HHHHHHHHHHHSCEEEEEEE--CCCCS----SCCEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred CCCCCCEEEEeCCCccCC-HHHHHHHHHhcCCEeEEEEE--ecCCC----CCCEEEEEECCHHHHHHHHHHhCCCCcC--
Confidence 345678999999999865 88999999999999999844 44333 3999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
-+.|+|+.+......
T Consensus 82 --g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 82 --GKEVKVNWATTPSSQ 96 (103)
T ss_dssp --TEEEEEEECCCTTCC
T ss_pred --CCeEEEEECCCCccc
Confidence 367888888775543
No 93
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=9.7e-15 Score=123.98 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=68.2
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCC--CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVP--GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vG--gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
....+|||||||...+ +.+|+++|..+| .|++|+ ...++.|| .|||||||+|.+.++|.++|+.+||+.|.+
T Consensus 53 ~~~~~lfVgnLp~~~t-e~~L~~~F~~~G~i~v~~v~--i~~d~~tg--~skGfaFV~f~~~~~A~~Ai~~lng~~~~G- 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTT-DQQLIQVIRSIGVYDVVELK--FAENRANG--QSKGYAEVVVASENSVHKLLELLPGKVLNG- 126 (156)
T ss_dssp ---CEEEEECCCTTCC-HHHHHHHHHHTTCCCEEEEE--EEECTTTC--CEEEEEEEEESCHHHHHHHHHHSTTCEETT-
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHCCccEEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 3568999999999865 889999999999 999998 66777787 999999999999999999999999999875
Q ss_pred eeeceeeeeeec
Q 015240 270 KVQKQIRCEMVN 281 (411)
Q Consensus 270 KVEK~ikce~~~ 281 (411)
+.|+|..+.
T Consensus 127 ---r~l~V~~a~ 135 (156)
T 3n9u_C 127 ---EKVDVRPAT 135 (156)
T ss_dssp ---EECEEEECC
T ss_pred ---eEeEEEEcC
Confidence 345555543
No 94
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=108.53 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=60.5
Q ss_pred ccEEEEcCCCCCCc-----hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 194 GIRVRLLNLPKKKN-----IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 194 gvRVrVGNLPkk~n-----i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+-+|||+|||.... ...+|+.+|..+|.|.++++. ++|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~----~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP----EEDG--KTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC----CBTT--BCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec----CCCC--cEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 35899999999853 257999999999999999844 4676 899999999999999999999999999874
No 95
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=110.24 Aligned_cols=99 Identities=21% Similarity=0.195 Sum_probs=76.2
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI 275 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~i 275 (411)
+|||+|||...+ +.+|+.+|..+|.|.+|+... + +||||||+|.+.++|.++|+.+||..|.+ +.+
T Consensus 2 ~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~i~~--~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 67 (101)
T 2hvz_A 2 KVYVGNLGTGAG-KGELERAFSYYGPLRTVWIAR--N-------PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRV 67 (101)
T ss_dssp EEEEECCCSSCS-HHHHHHHHHHHCCCSEEEEES--S-------SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCC
T ss_pred EEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEee--C-------CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEE
Confidence 799999999865 889999999999999998432 2 59999999999999999999999999773 558
Q ss_pred eeeeecCCCCCCCCCCCCCCCCCCCcccccccc
Q 015240 276 RCEMVNSSSSNSVDGHSSDDTSGYPKIKVYGFE 308 (411)
Q Consensus 276 kce~~~~~S~~~~~~~s~~s~~~~p~~~v~~fe 308 (411)
+++.+...+...............|++-|-+++
T Consensus 68 ~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 68 RVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp EEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred EEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 888887776554444333333344555555543
No 96
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.2e-14 Score=108.73 Aligned_cols=86 Identities=22% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...+.-+|||+|||...+ +.+|+++|..+|.|.+|++. .++ .+||||||+|.+.++|.++|+.+||..|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~i~-----~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~-- 87 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIR-TKDIEDVFYKYGAIRDIDLK-----NRR--GGPPFAFVEFEDPRDAEDAVYGRDGYDYD-- 87 (109)
T ss_dssp CCCCSSEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEC-----CSS--SSSCCEEEEESCHHHHHHHHHHHTTCEET--
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEE-----ECC--CCCcEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 345678999999999865 88999999999999999842 232 57999999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~ 287 (411)
-+.|+|+.+.......
T Consensus 88 --g~~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 88 --GYRLRVEFPRSGRGTG 103 (109)
T ss_dssp --TEECEEECCCCCCCCC
T ss_pred --CeEEEEEEcccCCCCC
Confidence 3577888877655443
No 97
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=3.5e-15 Score=111.94 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=66.5
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI 275 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~i 275 (411)
+|||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.+ |.++|+.+||..|.+ +.+
T Consensus 3 ~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l 72 (90)
T 2ki2_A 3 NIYVGNLVYSAT-SEQVKELFSQFGKVFNVK--LIYDRETK--KPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTI 72 (90)
T ss_dssp EEEEEEECTTSS-HHHHTTTHHHHTCCSEEE--ECCCSSSC--CCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSC
T ss_pred EEEECCCCCCCC-HHHHHHHHHhcCCEEEEE--EEEcCCCC--CcceEEEEEECCHH-HHHHHHHhCCCEECC----eEE
Confidence 799999999865 889999999999999998 55666676 89999999999999 999999999999873 567
Q ss_pred eeeeecCCCCCC
Q 015240 276 RCEMVNSSSSNS 287 (411)
Q Consensus 276 kce~~~~~S~~~ 287 (411)
+++.+.......
T Consensus 73 ~V~~a~~~~~~~ 84 (90)
T 2ki2_A 73 RVTEANPKKSLE 84 (90)
T ss_dssp SEEEC-------
T ss_pred EEEEcCCCCCCC
Confidence 777776655443
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=112.89 Aligned_cols=89 Identities=10% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCCCchHHHHH---HHhccCCCeeEEeeccccCCCCCC-CcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLK---SAFKGVPGIINIIPVVSGNKKTKD-PICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~---~aFk~vGgvisIkpav~~nrKTgD-p~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
.....+|||+|||...+ +.+|+ ++|..+|.|.+|++ ..++.|+. ..+||||||+|.+.++|.++|+.+||+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~-~~~l~~~~~~F~~~G~i~~v~i--~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLA-DPEVLKRPEYFGKFGKIHKVVI--NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCSSCEEEEEECTTTC-CHHHHHSTTTTTTTSCEEEEEE--ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred ccCCCEEEEECCCCCCC-HHHHHHHHHHhhccCCEEEEEE--ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 34577999999999865 88999 99999999999984 44444431 25789999999999999999999999998
Q ss_pred ccceeeceeeeeeecCCCCC
Q 015240 267 AFGKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S~~ 286 (411)
. -+.|+|+.+..+..+
T Consensus 89 ~----gr~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 89 D----GRTLKASLGTTKYCS 104 (111)
T ss_dssp T----TEEEEEESCCCCSCS
T ss_pred C----CEEEEEEeccccccc
Confidence 6 357888888776643
No 99
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=2.5e-14 Score=117.32 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+++-+|||+|||...+ ..+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 42 ~~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~lng~~i~g- 115 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTT-ERDLREVFSKYGPIADVS--IVYDQQSR--RSRGFAFVYFENVDDAKEAKERANGMELDG- 115 (129)
T ss_dssp CCCCSSCBCEETCTTSCC-HHHHHHHHTTTSCEEEEE--EECCSSSS--CCCCEEEEEESCHHHHHHHHHHHTTCCSSS-
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence 345788999999999865 889999999999999998 55666676 899999999999999999999999999874
Q ss_pred eeeceeeeeeecCC
Q 015240 270 KVQKQIRCEMVNSS 283 (411)
Q Consensus 270 KVEK~ikce~~~~~ 283 (411)
+.|+|+.+...
T Consensus 116 ---~~l~V~~a~~~ 126 (129)
T 2kxn_B 116 ---RRIRVDFSITK 126 (129)
T ss_dssp ---SCCEESCCSSS
T ss_pred ---EEEEEEEecCC
Confidence 55666666543
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=111.50 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=66.5
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCC-CCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNK-KTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nr-KTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....+-+|||+|||...+ +.+|+.+|..+| |.+++ ...++ .|| .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 15 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G-i~~v~--i~~~~~~~g--~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVT-EESIKEFFRGLN-ISAVR--LPREPSNPE--RLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp -----CEEEESCCSSCCS-SSHHHHHSCSSC-EEEEE--CSCCTTTTC--CCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCCCCcEEEEeCCCCCCC-HHHHHHHHHhcC-CeEEE--EEecCCcCC--ccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 345778999999999865 889999999999 99998 45555 465 89999999999999999999 899999874
Q ss_pred ceeeceeeeeeecCC
Q 015240 269 GKVQKQIRCEMVNSS 283 (411)
Q Consensus 269 gKVEK~ikce~~~~~ 283 (411)
+.++++.+..+
T Consensus 88 ----~~l~V~~a~~~ 98 (100)
T 2j76_E 88 ----RRIRVDVADQA 98 (100)
T ss_dssp ----BCCCCEECCCS
T ss_pred ----eEEEEEeccCC
Confidence 55677766544
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=3.8e-14 Score=116.85 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=75.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...++.-+|||+|||..++ +.+|+++|..+|.|.+|+ ...++.|+ .+||||||+|.+.++|.++|+.|||..|.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 107 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTT-EEQIYELFSKSGDIKKII--MGLDKMKK--TACGFCFVEYYSRADAENAMRYINGTRLD- 107 (156)
T ss_dssp TTTTTCCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHTTTSEET-
T ss_pred ccCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 3345788999999999865 889999999999999998 55666676 89999999999999999999999999986
Q ss_pred ceeeceeeeeeecCCCC
Q 015240 269 GKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~ 285 (411)
.+.|+|+.+.....
T Consensus 108 ---g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 108 ---DRIIRTDWDAGFKE 121 (156)
T ss_dssp ---TEECEEEEESCCCT
T ss_pred ---CeEEEEEECCCCCC
Confidence 46788888876544
No 102
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=3.1e-14 Score=107.39 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=68.1
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+..-+|||+|||...+ +.+|+++|..+|.|.+|++.. ++ + +.+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~-~~~l~~~F~~~G~i~~v~i~~--~~-~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 84 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVR-EEILYELFLQAGPLTKVTICK--DR-E--GKPKSFGFVCFKHPESVSYAIALLNGIRLYG- 84 (95)
T ss_dssp CTTGGGEEEEECCCTTCC-HHHHHHHHGGGSCEEEEEEEE--CT-T--SCEEEEEEEEESSTHHHHHHHHHHTTCEETT-
T ss_pred CCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCEEEEEEEE--CC-C--CCCceEEEEEECCHHHHHHHHHHhCCCEECC-
Confidence 345678999999999865 889999999999999998443 33 3 3889999999999999999999999999874
Q ss_pred eeeceeeeeeec
Q 015240 270 KVQKQIRCEMVN 281 (411)
Q Consensus 270 KVEK~ikce~~~ 281 (411)
+.|+++.+.
T Consensus 85 ---~~l~V~~a~ 93 (95)
T 2ywk_A 85 ---RPINVSGPS 93 (95)
T ss_dssp ---EECEEECCC
T ss_pred ---CEEEEEEcC
Confidence 556666543
No 103
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.5e-14 Score=108.80 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.....+.+|||+|||..++ +++|+++|..+|.|..+++. .+ |||||+|.+.++|.++|+.|||+.|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~i~--~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGS-WQDLKDHMREAGDVCYADVY--RD---------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCCSCCCEEEEESCCSSCC-HHHHHHHHGGGSCEEEEEEE--TT---------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEeEEEEe--cC---------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3345688999999999865 88999999999999999732 22 999999999999999999999999875
Q ss_pred ceee-ceeeeeeecCCCCCCC
Q 015240 269 GKVQ-KQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVE-K~ikce~~~~~S~~~~ 288 (411)
..+. +.|+++.+..++.+..
T Consensus 78 ~~~~~~~i~V~~a~~~~~~~~ 98 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRSPSYG 98 (108)
T ss_dssp TTSCEEEEEEEESSCCSCCCC
T ss_pred CcCcceEEEEEeCCCCCCCCC
Confidence 2212 6788888887665543
No 104
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.3e-14 Score=106.83 Aligned_cols=85 Identities=27% Similarity=0.420 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..+.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+ +|+.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~--~~~~~~g-- 82 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTT-EQDLKEYFSTFGEVLMVQ--VKKDLKTG--HSKGFGFVRFTEYETQVKVMS--QRHMIDG-- 82 (103)
T ss_dssp CCCCCCEEEESCCSSCC-HHHHHHHHGGGSCEEEEE--EEECSSSC--SEEEEEEEEESSHHHHHHHHH--SCEEETT--
T ss_pred cCCCCEEEEEcCCCcCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CccceEEEEECCHHHHHHHHH--cCCeeCC--
Confidence 34667999999999865 889999999999999998 55666676 899999999999999999999 5776653
Q ss_pred eeceeeeeeecCCCCC
Q 015240 271 VQKQIRCEMVNSSSSN 286 (411)
Q Consensus 271 VEK~ikce~~~~~S~~ 286 (411)
+.|+++.+......
T Consensus 83 --~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 83 --RWCDCKLPNSKQSQ 96 (103)
T ss_dssp --EEEEEECCCTTCCC
T ss_pred --eEEEEEecCCCCcC
Confidence 46677777665543
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7e-14 Score=109.21 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=65.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE-EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN-IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis-Ikpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.....+|||+|||...+ +.||+++|..+|.|.. |+ ...+ +|| .+||||||+|.+.++|.++|++ ||+.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~v~~~v~--i~~~-~~g--~~~G~afV~F~~~~~a~~A~~~-~~~~~~g- 83 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCS-KEEIVQFFSGLEIVPNGMT--LPVD-FQG--RSTGEAFVQFASQEIAEKALKK-HKERIGH- 83 (104)
T ss_dssp CSCCCEEEEESCCTTCC-HHHHHHHTTTCCEEEEEEE--CCBC-SSS--CBCSEEEEEESSHHHHHHHHTT-TTCCSSS-
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCcceeEE--EEEC-CCC--CcceEEEEEECCHHHHHHHHHh-CcchhCC-
Confidence 35678999999999875 8899999999999887 76 3344 576 8999999999999999999998 9988764
Q ss_pred eeeceeeeeeec
Q 015240 270 KVQKQIRCEMVN 281 (411)
Q Consensus 270 KVEK~ikce~~~ 281 (411)
+.|++..+.
T Consensus 84 ---r~i~v~~~~ 92 (104)
T 1wg5_A 84 ---RYIEIFKSS 92 (104)
T ss_dssp ---SCCEEEEEC
T ss_pred ---cEEEEEECC
Confidence 345555543
No 106
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.9e-14 Score=105.60 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.....-+|||+|||...+ +.+|+.+|..+|.|.+|+ +.||||||+|.+.++|.++|+.+||+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~v~------------~~~~~afV~f~~~~~a~~A~~~l~g~~~~-- 70 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECD------------IVKDYAFVHMERAEDAVEAIRGLDNTEFQ-- 70 (92)
T ss_dssp CCCSSEEEEEESCCSSCC-HHHHHHHHHTTSCCCEEE------------ECSSEEEEEESCHHHHHHHHHHHTTEEET--
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE------------EECCEEEEEECCHHHHHHHHHHhCCCeeC--
Confidence 345778999999999865 889999999999999997 33779999999999999999999999987
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
-+.++++.+..+....+
T Consensus 71 --g~~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 71 --GKRMHVQLSTSRLRTAS 87 (92)
T ss_dssp --TEEEEEEESSCCCSCCC
T ss_pred --CcEEEEEEccCCCCCCC
Confidence 46788888877766554
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.1e-14 Score=105.70 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=68.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
...+.+|||+|||...+ +.||+.+|..+ +|++|++. .+ .|| .+||||||+|.+.++|.++|+ +||..|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t-~~~l~~~F~~~-~i~~v~i~--~~-~~g--~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-- 76 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVT-EKNVMEFLAPL-KPVAIRIV--RN-AHG--NKTGYIFVDFSNEEEVKQALK-CNREYMGG-- 76 (91)
T ss_dssp CCCCCEEEEECCCSSCC-HHHHHHHHTTS-CCSEEEEE--EC-TTS--CEEEEEEEECSSHHHHHHHHH-SCSEEETT--
T ss_pred CCCccEEEEECCCCCCC-HHHHHHHHhhC-CceEEEEE--EC-CCC--CCceEEEEEECCHHHHHHHHH-hCCceeCC--
Confidence 34678999999999865 88999999999 99999844 34 465 889999999999999999999 99999873
Q ss_pred eeceeeeeeecCCC
Q 015240 271 VQKQIRCEMVNSSS 284 (411)
Q Consensus 271 VEK~ikce~~~~~S 284 (411)
+.|++..+....
T Consensus 77 --r~i~v~~a~~~~ 88 (91)
T 2dgw_A 77 --RYIEVFREKSGP 88 (91)
T ss_dssp --EEEEEEEESSCC
T ss_pred --cEEEEEECCcCC
Confidence 467777776653
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=107.59 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=69.3
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+..-+|||+|||...+ +.+|+++|.+++ .|+ ...++.|+ .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~~---~~~--~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 81 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTT-EETLKESFDGSV---RAR--IVTDRETG--SSKGFGFVDFNSEEDAKAAKEAMEDGEIDG- 81 (102)
T ss_dssp SSCCCSSEEEECCCTTCC-HHHHHHTSTTCS---EEE--EEECSSSC--SEEEEEEEECSSHHHHHHHHHHHTTCEETT-
T ss_pred CCCCCCEEEEeCCCCccC-HHHHHHHhcCCe---EEE--EEecCCCC--CcCcEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence 345778999999999865 889999999774 444 34566676 899999999999999999999999999873
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
+.|+|+.+......
T Consensus 82 ---~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 82 ---NKVTLDWAKPKGEG 95 (102)
T ss_dssp ---EECEEEECCCCCSS
T ss_pred ---eEEEEEEecCCCCC
Confidence 56888888765543
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=8.9e-14 Score=106.59 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=69.4
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....+.-+|||+|||...+ +.+|+++|..+|.| +| ..+ .|+ .+||||||+|.+.++|.++|+.+||+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g~v-~~----~~~-~~g--~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 79 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSAT-EETLQEVFEKATFI-KV----PQN-QNG--KSKGYAFIEFASFEDAKEALNSCNKREIE- 79 (101)
T ss_dssp CCSCCCSEEEEESCCTTCC-HHHHHHHCSSCSEE-EC----CBC-SSS--CBCSEEEEECSSHHHHHHHHHHTSSEEET-
T ss_pred cCCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCEE-EE----EEC-CCC--CEeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 3445789999999999865 88999999999976 32 222 454 89999999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~ 286 (411)
-+.|+|+.+..+...
T Consensus 80 ---g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 80 ---GRAIRLELQGPRGSP 94 (101)
T ss_dssp ---TEEEEEEECSSCCCC
T ss_pred ---CeEEEEEEcCCCCCC
Confidence 456888888776543
No 110
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.6e-14 Score=104.95 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=59.5
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
+|||+|||...+ +.+|+.+|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+.+| +.|.+
T Consensus 2 ~l~v~nlp~~~t-~~~l~~~F~~~G~v~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~a~~~~~-~~~~g 68 (77)
T 1uaw_A 2 KMFIGGLSWQTT-QEGLREYFGQFGEVKECL--VMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQSR-HELDS 68 (77)
T ss_dssp CEEEESCCSSCC-SHHHHHHHTTTSCCCCEE--EECCCCSS--SCSSEEEECCCCTTHHHHHHHTTT-CCCSS
T ss_pred EEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EecCCCCC--CcCceEEEEEcCHHHHHHHHHhCC-CccCC
Confidence 799999999865 889999999999999998 45666676 899999999999999999999999 77664
No 111
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-13 Score=105.59 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=68.8
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccC--CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGV--PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~v--GgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
...+..-+|||+|||...+ +.+|+.+|..+ |.|.+++ ++||||||+|.+.++|.++|+.+||..|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g~g~v~~~~------------~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTS-EEMIEKEFNNIKPGAVERVK------------KIRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCSSCCCEEEEESCCTTCC-HHHHHHHHHTTSTTCEEEEE------------ECSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred cccCCcCEEEEeCCCCCCC-HHHHHHHHHhcCCcceEEEE------------EeCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 4445778999999999865 88999999999 8888886 4589999999999999999999999998
Q ss_pred ccceeeceeeeeeecCCCCC
Q 015240 267 AFGKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S~~ 286 (411)
. -+.|+|+.+......
T Consensus 77 ~----g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 77 D----GSPIEVTLAKPVDKD 92 (99)
T ss_dssp T----TEEEEEECCCCCCCC
T ss_pred C----CcEEEEEECCCCCCC
Confidence 7 357788887766543
No 112
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4e-14 Score=110.95 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
...-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 23 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 93 (114)
T 2cq4_A 23 RDARTVFCMQLAARIR-PRDLEDFFSAVGKVRDVR--IISDRNSR--RSKGIAYVEFCEIQSVPLAI-GLTGQRLLG--- 93 (114)
T ss_dssp HHHTEEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--ECCSCCSS--SCCCCEEEEESCGGGHHHHH-HHTTEEETT---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEeEEE--EEecCCCC--ccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---
Confidence 3567999999999865 889999999999999998 55666676 89999999999999999999 999999874
Q ss_pred eceeeeeeec
Q 015240 272 QKQIRCEMVN 281 (411)
Q Consensus 272 EK~ikce~~~ 281 (411)
+.|+|+.+.
T Consensus 94 -~~l~V~~a~ 102 (114)
T 2cq4_A 94 -VPIIVQASQ 102 (114)
T ss_dssp -EEEEEEEHH
T ss_pred -eEEEEEecC
Confidence 455666554
No 113
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-14 Score=114.16 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....++.+|||+|||...+ +.+|+.+|..+|.|..+. .+.++.|| .+||||||+|.+.++|.++|+ +||+.|.+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~v~~~~--~~~~~~~g--~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAE-NKHVIDFFKKLDIVEDSI--YIAYGPNG--KATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp SCCCCCCEEEEECCCTTCC-HHHHHHHSCSSCBCTTTC--EEEECTTS--SEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCccceE--EEEECCCC--CCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 4456789999999999865 889999999999987643 34455576 899999999999999999999 99999875
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=4.4e-14 Score=111.85 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
+.-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 35 ~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 104 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST-AQDLEAHFSSCGSINRIT--ILCDKFSG--HPKGYAYIEFAERNSVDAAV-AMDETVFRG---- 104 (124)
T ss_dssp HHTEEEEEEECTTCC-HHHHHHHHHTTSCEEEEE--EEEECTTS--SCEEEEEEEESSHHHHHHHH-TTTTCEETT----
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--CcccEEEEEECCHHHHHHHH-hcCCCeECC----
Confidence 568999999999865 889999999999999998 45555676 88999999999999999999 799999874
Q ss_pred ceeeeeeecCCCC
Q 015240 273 KQIRCEMVNSSSS 285 (411)
Q Consensus 273 K~ikce~~~~~S~ 285 (411)
+.|+++.+.....
T Consensus 105 ~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 105 RTIKVLPKRTNMP 117 (124)
T ss_dssp EECEEEESSCCCS
T ss_pred eEEEEEECCCCCC
Confidence 5667777665433
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=9.7e-14 Score=106.37 Aligned_cols=86 Identities=19% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..++.-+|||+|||...+ +.+|+.+|..+|.|.+|++. .+ ||||||+|.+.++|.++|+.+||+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~i~~v~~~--~~--------kg~afV~f~~~~~a~~a~~~l~g~~~~g- 78 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDIT-EEEMRKLFEKYGKAGEVFIH--KD--------KGFGFIRLETRTLAEIAKVELDNMPLRG- 78 (99)
T ss_dssp CCCCTTEEEEESCCTTCC-HHHHHHHTSTTCCCSEEEEE--TT--------TTEEEEECSSSHHHHHHHHHHTTCCBTT-
T ss_pred cCCCCCEEEEeCCCCCCC-HHHHHHHHhhcCCeEEEEEe--cC--------CCEEEEEECCHHHHHHHHHHhCCCEeCC-
Confidence 345678999999999865 88999999999999999843 22 8999999999999999999999999873
Q ss_pred eeeceeeeeeecCCCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSVDG 290 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~~~ 290 (411)
+.++|+.+.........+
T Consensus 79 ---~~l~v~~a~~~~~~~~g~ 96 (99)
T 2cpj_A 79 ---KQLRVRFACHSASLTSGP 96 (99)
T ss_dssp ---BCCEEEESSCCSCCCCCC
T ss_pred ---ceEEEEEcCCCCCCCCCC
Confidence 678888888776655543
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=1.2e-13 Score=106.75 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=69.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
....-+|||+|||...+ +.+|+++|..+|.|.+++ +.||||||+|.+.++|.++|+.|||+.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t-~~~l~~~F~~~G~i~~v~------------~~~~~afV~f~~~~~a~~A~~~l~g~~~~--- 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVT-EEILEKAFSQFGKLERVK------------KLKDYAFIHFDERDGAVKAMEEMNGKDLE--- 71 (103)
T ss_dssp CCCCCCEEEECCCTTCC-HHHHHHHHHHHSCEEEEE------------ECSSCEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE------------EECCEEEEEeCCHHHHHHHHHHHCCCccC---
Confidence 34567999999999865 889999999999999997 34789999999999999999999999987
Q ss_pred eeceeeeeeecCCCCCCCC
Q 015240 271 VQKQIRCEMVNSSSSNSVD 289 (411)
Q Consensus 271 VEK~ikce~~~~~S~~~~~ 289 (411)
-+.|+|+.+.........
T Consensus 72 -g~~l~v~~a~~~~~~~~~ 89 (103)
T 2dgu_A 72 -GENIEIVFAKPPDQKRKE 89 (103)
T ss_dssp -TEEEEEEECCCCCCCCCC
T ss_pred -CCEEEEEEcCCCcccchh
Confidence 357888888776654443
No 117
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.51 E-value=1.7e-14 Score=104.70 Aligned_cols=67 Identities=16% Similarity=0.356 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
||||+|||...+ +.+|+++|..+|.|.+++ ...++.|| .+||||||+|.+.++|.++|+. +|+.|.+
T Consensus 1 ~l~v~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 67 (75)
T 1iqt_A 1 KIFVGGLSPDTP-EEKIREYFGGFGEVESIE--LPMDNKTN--KRRGFCFITFKEEEPVKKIMEK-KYHNVGL 67 (75)
T ss_dssp CEEESCCCSSCC-HHHHHHHHHHHSCCSEEC--CCCSCCCS--SSCCCEEEECSSSHHHHHHHTT-SSCCBTT
T ss_pred CEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--CcCCEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 699999999865 889999999999999998 55666676 8999999999999999999996 8888775
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=3.6e-14 Score=116.86 Aligned_cols=86 Identities=17% Similarity=0.315 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
.++-+|||+|||...+ ..+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 45 ~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~v~--i~~~~~~g--~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g--- 116 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS-PDTLRRVFEKYGRVGDVY--IPRDRYTK--ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--- 116 (135)
T ss_dssp GGCCCEEEECCCSSCH-HHHHHHHHGGGSCCSEEE--CCCCSSSS--SCCSCCEEECSCHHHHHHHHTTTTTCCSSS---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEE--EEecCCCC--ccceEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4577999999999854 889999999999999998 55666676 899999999999999999999999999873
Q ss_pred eceeeeeeecCCCCC
Q 015240 272 QKQIRCEMVNSSSSN 286 (411)
Q Consensus 272 EK~ikce~~~~~S~~ 286 (411)
+.|+|+.+....+.
T Consensus 117 -~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 117 -RELRVQMARYGRPP 130 (135)
T ss_dssp -SCCEEEECCCCCCC
T ss_pred -EEEEEEECCCCCCC
Confidence 57788887765443
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=9.3e-15 Score=112.05 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
....+|||+|||...+ +.+|+.+|..+|.|.. + ...++.|| .+||||||+|.+.++|.++|+ +||..|.+
T Consensus 15 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~-~--~~~~~~~g--~~~g~afV~f~~~~~a~~A~~-l~g~~~~g--- 84 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKS-VAELKVAISELFAKND-L--AVVDVRTG--TNRKFGYVDFESAEDLEKALE-LTGLKVFG--- 84 (101)
T ss_dssp SCSEEEEEECCCTTSC-HHHHHHHHHHHHHHHT-C--CCCEEEEE--TTTTEEEEEESSHHHHHHHHH-GGGCCBTT---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcce-E--EEecCCCC--CcCcEEEEEECCHHHHHHHHh-cCCcEECC---
Confidence 4578999999999865 8899999999999887 3 55666676 899999999999999999999 99999873
Q ss_pred eceeeeeeecCCC
Q 015240 272 QKQIRCEMVNSSS 284 (411)
Q Consensus 272 EK~ikce~~~~~S 284 (411)
+.|+++.+..+.
T Consensus 85 -~~l~V~~a~~~~ 96 (101)
T 1fj7_A 85 -NEIKLEKPKGRD 96 (101)
T ss_dssp -BCCEEECCSCCC
T ss_pred -cEEEEEEcCCCC
Confidence 567777776544
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=7.9e-14 Score=110.30 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=67.5
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...++-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+ |+.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~t-e~~L~~~F~~~G~i~~v~--i~~~~~tg--~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g- 93 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTT-QEGLREYFGQFGEVKECL--VMRDPLTK--RSRGFGFVTFMDQAGVDKVLAQS-RHELDS- 93 (109)
T ss_dssp -----CCEEEESCCTTCC-HHHHHHHHTTTSCEEEEE--ECCCTTTC--CCTTCEEEEESSHHHHHHHHHSS-CEEETT-
T ss_pred cCCCCCEEEEeCCCCCCC-HHHHHHHHHccCCeEEEE--EEECCCCC--CcCcEEEEEECCHHHHHHHHHHC-CCcCCC-
Confidence 335678999999999865 889999999999999998 56677786 89999999999999999999986 566553
Q ss_pred eeeceeeeeeecCCC
Q 015240 270 KVQKQIRCEMVNSSS 284 (411)
Q Consensus 270 KVEK~ikce~~~~~S 284 (411)
+.++++.+..+.
T Consensus 94 ---~~l~V~~a~~~~ 105 (109)
T 2rs2_A 94 ---KTIDPKVAFPRR 105 (109)
T ss_dssp ---EEEEEEECCCCC
T ss_pred ---EEEEEEEccCCC
Confidence 566777766544
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=3.9e-14 Score=107.22 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHH----HHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLK----SAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~----~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
.+++-+|||+|||...+ +.+|+ .+|..+|.|.+|+.. +|| .+||||||+|.+.++|.++|+.+||..|
T Consensus 5 ~~~~~~l~V~nLp~~~~-~~~l~~~l~~~f~~~G~i~~v~i~-----~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIK-KDELKKSLHAIFSRFGQILDILVS-----RSL--KMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp -CCCSEEEEESCCTTSC-HHHHHHHHHHHHGGGSCEEEEECC-----HHH--HHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEEE-----cCC--CcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 45778999999999865 77888 999999999999844 243 7899999999999999999999999998
Q ss_pred ccceeeceeeeeeecCCCC
Q 015240 267 AFGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S~ 285 (411)
.+ +.++++.+...+.
T Consensus 77 ~g----~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 77 YD----KPMRIQYAKTDSD 91 (97)
T ss_dssp TT----EECEEEECSSCCT
T ss_pred CC----cEEEEEEccCCCc
Confidence 63 6678887776543
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.1e-14 Score=107.55 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=66.9
Q ss_pred CCCCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+++-+|||+|||. ..+ +.+|+.+|..+|.|.+|++ .||||||+|.+.++|.++|+.+||..|.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t-~~~l~~~F~~~G~v~~v~i------------~~g~afV~f~~~~~A~~A~~~l~g~~~~- 71 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVS-KEDLFRIFSPYGHIMQINI------------KNAFGFIQFDNPQSVRDAIECESQEMNF- 71 (96)
T ss_dssp ---CCEEEEEESSTTSCCC-HHHHHHHHTTTCCCCEEEE------------ETTEEEEEESCHHHHHHHHHHHTCSSCB-
T ss_pred cCCCCCEEEEeCCCcccCC-HHHHHHHHHhcCCEEEEEE------------eCCEEEEEECCHHHHHHHHHHcCCCeeC-
Confidence 356788999999997 754 8899999999999999984 3899999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~ 287 (411)
.+.++|+.+.......
T Consensus 72 ---g~~l~V~~a~~~~~~~ 87 (96)
T 2kvi_A 72 ---GKKLILEVSSSNARPQ 87 (96)
T ss_dssp ---TTTBCEEEEECCCC--
T ss_pred ---CcEEEEEEcCcCCCCC
Confidence 4677888887665443
No 123
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5e-14 Score=111.63 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCe-eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI-INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv-isIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+..+|||+|||...+ +.+|+++|..+|.| .+|+ ...++ || .+||||||+|.+.++|.++|+. ||+.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t-~~~l~~~F~~~g~v~~~v~--i~~d~-~g--~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSIT-KMDVLQFLEGIPVDENAVH--VLVDN-NG--QGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCSCCCEEEEESCCTTSC-HHHHHHHTTTSCCCSTTEE--ECCCT-TS--SCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCCCccEEEEeCcCCcCC-HHHHHHHHHhCCCcCCeEE--EEECC-CC--CcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 345678999999999865 88999999999998 6676 44555 65 8999999999999999999998 9999875
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+.|+|+.+.
T Consensus 84 ----r~i~v~~a~ 92 (114)
T 2cpy_A 84 ----REAFVHVVT 92 (114)
T ss_dssp ----EEEEEEEEC
T ss_pred ----eEEEEEECC
Confidence 345555543
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=104.54 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=67.9
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+.+-+|||+|||...+ +.+|+.+|..+|.|.+|+ ++||||||+|.+.++|.++|+.+||..|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~~~------------~~~~~afV~f~~~~~a~~A~~~l~g~~~~-- 69 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACT-SQELRSLFERRGRVIECD------------VVKDYAFVHMEKEADAKAAIAQLNGKEVK-- 69 (90)
T ss_dssp SSCCSCCEEEESCCTTCC-HHHHHHHHHHHSCEEEEE------------ECSSCEEEEESCHHHHHHHHHHHTTCEET--
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHcCCCEEEEE------------EECCEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 345778999999999865 889999999999999997 34789999999999999999999999987
Q ss_pred eeeceeeeeeecCCCC
Q 015240 270 KVQKQIRCEMVNSSSS 285 (411)
Q Consensus 270 KVEK~ikce~~~~~S~ 285 (411)
-+.++++.+.....
T Consensus 70 --g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 70 --GKRINVELSTKGQK 83 (90)
T ss_dssp --TEECEEEESCCCCC
T ss_pred --CcEEEEEECCCCCC
Confidence 35678888776644
No 125
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=1e-13 Score=111.07 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
++-+|||+|||...+ ..+|+.+|..+|.|.+|+ ...+++|| .+||||||+|.+.++|.++++.+||..|.+
T Consensus 2 ~~~~l~v~nlp~~~~-~~~l~~~f~~~G~i~~v~--i~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---- 72 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT-DRELYALFRAIGPINTCR--IMRDYKTG--YSYGYAFVDFTSEMDSQRAIKVLNGITVRN---- 72 (168)
T ss_dssp CCSEEEEECCCTTCC-HHHHHHHHHTTSCEEEEE--CCEETTTT--EECSEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred CccEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEE--EEEeCCCC--ccceEEEEEECCHHHHHHHHHhcCCCEeCC----
Confidence 457899999999865 889999999999999998 55666676 899999999999999999999999999863
Q ss_pred ceeeeeeecCC
Q 015240 273 KQIRCEMVNSS 283 (411)
Q Consensus 273 K~ikce~~~~~ 283 (411)
+.++++.+...
T Consensus 73 ~~l~v~~~~~~ 83 (168)
T 1b7f_A 73 KRLKVSYARPG 83 (168)
T ss_dssp EECEEEECCCC
T ss_pred cEEEEEecCCC
Confidence 45667666543
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=107.22 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=67.3
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..++-+|||+|||...+ +.+|+.+|..+|.|..+ +.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t-~~~l~~~F~~~g~v~~~-------~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 80 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNIT-EDELKEVFEDALEIRLV-------SQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDG-- 80 (96)
T ss_dssp TTGGGEEEEESCCSSCC-HHHHHHHHCSEEEECCE-------EETT--EEEEEEEEEESSHHHHHHHHHHTTEEEETT--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHhhCCcEEEe-------CCCC--CcceEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 45678999999999865 88999999999876554 3455 889999999999999999999999999873
Q ss_pred eeceeeeeeecCCCC
Q 015240 271 VQKQIRCEMVNSSSS 285 (411)
Q Consensus 271 VEK~ikce~~~~~S~ 285 (411)
+.|+++.+..++.
T Consensus 81 --~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 81 --RSVSLYYTGEKGG 93 (96)
T ss_dssp --EEEEEEECSSSCC
T ss_pred --eEEEEEEcCCCCC
Confidence 4577877766543
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.8e-14 Score=109.74 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
...+.+|||+|||.+.+ ++||+++|..+| +++|+ ...++ || .|||||||+|.+.++|.++|+ +||+.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G-~~~v~--i~~d~-~g--~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-- 81 (102)
T 1wez_A 12 STTGHCVHMRGLPYRAT-ENDIYNFFSPLN-PMRVH--IEIGP-DG--RVTGEADVEFATHEDAVAAMA-KDKANMQH-- 81 (102)
T ss_dssp CSSSCEEEEESCCTTCC-HHHHHHSSCSCC-CSEEE--EEESS-SS--CEEEEEEEECSSSHHHHHHHT-TSSCCSSS--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHcC-ceEEE--EEECC-CC--CEeeEEEEEECCHHHHHHHHH-hCCCeECC--
Confidence 35678999999999975 889999999999 66887 44555 65 999999999999999999996 69988763
Q ss_pred eeceeeeeeecC
Q 015240 271 VQKQIRCEMVNS 282 (411)
Q Consensus 271 VEK~ikce~~~~ 282 (411)
+.|++..+..
T Consensus 82 --r~i~V~~~~~ 91 (102)
T 1wez_A 82 --RYVELFLNST 91 (102)
T ss_dssp --SCCEEEEECC
T ss_pred --cEEEEEECCC
Confidence 3455555443
No 128
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.9e-14 Score=109.46 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=68.6
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.....+-+|||+|||...+ +.+|+.+|..+|.|.++++.. ++ + .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i~~--~~--~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFR-DPDLRQMFGQFGKILDVEIIF--NE--R--GSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp SCTTCCCEEEEESCCTTCC-HHHHHHHGGGTCCCSCEEECC--BT--T--BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred cCCCCCCEEEEECCCCcCC-HHHHHHHHHhcCCEEEEEEEE--CC--C--CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4456788999999999865 889999999999999998443 32 2 379999999999999999999999999874
Q ss_pred ceeeceeeeeeecC
Q 015240 269 GKVQKQIRCEMVNS 282 (411)
Q Consensus 269 gKVEK~ikce~~~~ 282 (411)
+.++++.+..
T Consensus 97 ----~~l~V~~a~~ 106 (109)
T 2err_A 97 ----RKIEVNNATA 106 (109)
T ss_dssp ----EECEEEECCC
T ss_pred ----EEEEEEECCC
Confidence 4566666554
No 129
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=1e-13 Score=110.16 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=68.7
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeec
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQK 273 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK 273 (411)
.-+|||+|||...+ +.+|+.+|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++++.+||..|.+ +
T Consensus 2 ~~~l~v~nlp~~~~-~~~l~~~f~~~G~i~~v~--~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~g----~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMT-QEEFRSLFGSIGEIESCK--LVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQT----K 72 (167)
T ss_dssp CSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred cceEEEcCCCCCCC-HHHHHHHHHhcCCeEEEE--EEeCCCCC--cceeEEEEEECCHHHHHHHHHHcCCCccCC----c
Confidence 46899999999865 889999999999999998 55666676 899999999999999999999999999874 5
Q ss_pred eeeeeeecC
Q 015240 274 QIRCEMVNS 282 (411)
Q Consensus 274 ~ikce~~~~ 282 (411)
.++++.+..
T Consensus 73 ~l~v~~~~~ 81 (167)
T 1fxl_A 73 TIKVSYARP 81 (167)
T ss_dssp ECEEEECCC
T ss_pred eEEEEecCC
Confidence 566666553
No 130
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.1e-13 Score=109.45 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=70.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+++-+|||+|||...+ +.+|+++|..+|.|.+|++. .+ ||||||+|++.++|.++|+.+||..+.+
T Consensus 10 ~~~~p~~~l~V~nLp~~~t-e~~L~~~F~~fG~V~~v~i~--~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVV-EADLVEALEKFGTICYVMMM--PF--------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCCCCSEEEEESCCSSCC-HHHHHHHHTTTSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CcCCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEEEE--CC--------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3446778999999999865 88999999999999999742 22 8999999999999999999998876433
Q ss_pred ceeeceeeeeeecCCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~~ 288 (411)
. -++|+|+.+..+....+
T Consensus 79 ~--Gr~l~V~~a~~~~~~~~ 96 (104)
T 1wex_A 79 A--GQQAFFNYSTSKRITRP 96 (104)
T ss_dssp S--SSBCEEEECSSSSCCCS
T ss_pred C--CEEEEEEEccCccccCC
Confidence 2 36788888887665544
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.7e-14 Score=111.05 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=61.1
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...-+|||||||.+.+ ..+|+++|..+|.|.+|++. .++. | .+||||||+|.+.++|.++|+ +||+.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~t-e~~L~~~F~~~G~v~~v~i~--~d~~-g--~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT-LDDIKEWLEDKGQVLNIQMR--RTLH-K--AFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCC-HHHHHHHHHTSSCEEEEEEE--CCCT-T--SCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCC-HHHHHHHHhhcCCEEEEEEE--ECCC-C--CCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 3567999999999865 88999999999999999844 4432 3 899999999999999999999 89999876
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=115.04 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCCccEEEEcCCCCCCchHHH----HHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 191 MPSGIRVRLLNLPKKKNIHRD----LKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kD----L~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
.+++.+|||||||...+ ..+ |.++|..+|.|++|... +|| .+||||||+|.+.++|.++|+.+||+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~-e~~L~~~L~~~F~~~G~I~~v~i~-----~~~--~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVP-KEKLQALLYALASSQGDILDIVVD-----LSD--DNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp CSCCSEEEEESCCTTSC-HHHHHHHHHHHHHHHSCEEEEEEC-----CCC--SSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHHhccCCCeEEEEec-----cCC--CcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 35678999999999865 445 45799999999998742 354 7899999999999999999999999998
Q ss_pred ccceeeceeeeeeecCCCC
Q 015240 267 AFGKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S~ 285 (411)
.+ ++|+|+.+...+.
T Consensus 98 ~g----r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 98 QG----NPLVITFSETPQS 112 (127)
T ss_dssp TT----SCCEEEECCCCCH
T ss_pred CC----CEEEEEEccCcch
Confidence 63 4778888776553
No 133
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-13 Score=106.79 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=59.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCC-CCcccceEEEeecCHHHHHHHHHHh---CCcee
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTK-DPICKGFAFVDFESEDYATRFVQLF---SRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTg-Dp~CKGFAFVtf~seedA~rfIEk~---NGq~~ 266 (411)
....-+|||+|||...+ +.+|+++|..+|.|. +. ...++.|+ .+.+||||||+|.+.++|.++|+.+ ||+.|
T Consensus 5 ~~~~~~lfVgnLp~~~t-e~~L~~~F~~~G~i~-~~--~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDID-EDEITASFRRFGPLV-VD--WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCC-HHHHHHHTTTTCCCC-EE--CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCCEEEEcCCCCCCC-HHHHHHHHHhcCCEE-EE--EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 34578999999999865 889999999999998 65 44555551 0289999999999999999999998 77765
Q ss_pred c
Q 015240 267 A 267 (411)
Q Consensus 267 ~ 267 (411)
.
T Consensus 81 ~ 81 (114)
T 2dnl_A 81 L 81 (114)
T ss_dssp E
T ss_pred E
Confidence 4
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-13 Score=103.70 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
+....++.-+|||+|||...+ +.+|+.+|..+|.|.+|+.. ++ ||||||+|.+.++|.++|+.+||+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~~~------~~----~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 10 GYGKANPTTRLWVGGLGPNTS-LAALAREFDRFGSIRTIDHV------KG----DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp CCCCCCCCSCEEEECCCSSCC-HHHHHHHHHTTSCEEEEEEC------SS----SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred cCCCCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeeEEEEe------CC----CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 445567788999999999865 88999999999999999732 22 89999999999999999999999998
Q ss_pred cc-ceeeceeeeeeecCCCC
Q 015240 267 AF-GKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 267 ~f-gKVEK~ikce~~~~~S~ 285 (411)
.. | +.++|+.+..+..
T Consensus 79 ~~~g---~~l~V~~a~~~~~ 95 (97)
T 1why_A 79 GGPD---RRLRVDFAKSGPS 95 (97)
T ss_dssp SSSS---CBCEEEECCCCCC
T ss_pred CCCC---cEEEEEECCCCCC
Confidence 74 3 5677887766543
No 135
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=5.2e-14 Score=124.19 Aligned_cols=117 Identities=11% Similarity=0.090 Sum_probs=89.7
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHHHH
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHRDL 212 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~kDL 212 (411)
++|||++.|.+.+.++++| +|.+.. .++.+.+.. ....+|||+|||...+ ..+|
T Consensus 80 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~-----------------------~~~~~l~v~nlp~~~t-~~~l 134 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH-----------------------LTECTLWMTNFPPSYT-QRNI 134 (292)
T ss_dssp SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE-----------------------CCSCEEEEECCCTTCC-HHHH
T ss_pred CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE-----------------------CCCCEEEEECCCCCCC-HHHH
Confidence 6899999999999999999 475544 444444332 1367999999999865 8899
Q ss_pred HHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeecCCC
Q 015240 213 KSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 213 ~~aFk~vG-gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~~~S 284 (411)
+++|..+| .|.+|++....+ +.+||||||+|.+.++|.++|+.+||+.|.+ +.+++..+....
T Consensus 135 ~~~f~~~G~~i~~v~i~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 198 (292)
T 2ghp_A 135 RDLLQDINVVALSIRLPSLRF-----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG----YTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHTTCCCCEEECC------------CCEEEEECSSHHHHHHHHHHHTTCEETT----EECEEEECCCC-
T ss_pred HHHHHHhCCCeEEEEEEeCCC-----CCcceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEEEEECCCCc
Confidence 99999999 999998443322 3679999999999999999999999999864 566777666443
No 136
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=8.3e-14 Score=111.88 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
++..+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.||.+.+||||||+|.+.++|.++|+.+||+.+..++
T Consensus 1 s~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~- 76 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWS-EKDLRELFEQYGAVYEIN--VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM- 76 (175)
T ss_dssp CCCEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEE--EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC-
T ss_pred CCceEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC-
Confidence 3567999999999865 889999999999999998 455555765689999999999999999999999999876542
Q ss_pred eceeeeeee
Q 015240 272 QKQIRCEMV 280 (411)
Q Consensus 272 EK~ikce~~ 280 (411)
.+.+.+...
T Consensus 77 ~~~~~~~~~ 85 (175)
T 3nmr_A 77 HHPIQMKPA 85 (175)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEccc
Confidence 234444443
No 137
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-13 Score=106.66 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+...+|||+|||...+ ..+|+.+|..+|.|.+|++. .+ ||||||+|.+.++|.++|+.|||..|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t-~~~l~~~F~~~G~i~~v~i~--~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~g- 88 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLT-DQLMRQTFSPFGQIMEIRVF--PE--------KGYSFVRFSTHESAAHAIVSVNGTTIEG- 88 (109)
T ss_dssp SCSSCCEEEEECCSSCCC-HHHHHHHHHHHSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--CC--------CCEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 345678999999999865 88999999999999999733 22 8999999999999999999999999873
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
+.|+|+.+........
T Consensus 89 ---~~l~v~~a~~~~~~~~ 104 (109)
T 1x4g_A 89 ---HVVKCYWGKESPDMTS 104 (109)
T ss_dssp ---EECEEECCCCCCSSCC
T ss_pred ---cEEEEEecCCCCCCCC
Confidence 5678888777655443
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=8.9e-14 Score=113.46 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vG-gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.+.+.+|||+|||..++ .+||+++|..+| .|..+++. . + .+||||||+|.+.++|.++|+++||..|.+
T Consensus 25 p~~~~~l~VgnLp~~~t-e~dL~~~F~~~G~~v~~v~i~--~----~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G- 94 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCS-WQDLKDLARENSLETTFSSVN--T----R--DFDGTGALEFPSEEILVEALERLNNIEFRG- 94 (111)
T ss_dssp CCCCEEEEEECSSCCCC-HHHHHHHHHHHTCCCSEEECS--S----C--SSSCCEEEEESSHHHHHHHHHHTTTEEETT-
T ss_pred CCCCCEEEEECCCCCCC-HHHHHHHHHHhCCeeEEEEEE--c----C--CCCCEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 34578999999999865 889999999999 89888732 1 1 369999999999999999999999999874
Q ss_pred eeeceeeeeeecC
Q 015240 270 KVQKQIRCEMVNS 282 (411)
Q Consensus 270 KVEK~ikce~~~~ 282 (411)
+.|+|+.+..
T Consensus 95 ---r~i~V~~a~~ 104 (111)
T 2jvr_A 95 ---SVITVERDDN 104 (111)
T ss_dssp ---EEEEEEESCC
T ss_pred ---eEEEEEECCC
Confidence 4577777654
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.47 E-value=5.8e-13 Score=104.08 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=68.3
Q ss_pred CCCCccEEEEcCCCCC-CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKK-KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk-~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..+.+-+|||+|||.. .+ +.+|+.+|..+|.|..|++ +||||||+|.+.++|.++|+.+||..|.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t-~~~l~~~F~~~G~v~~v~i------------~~g~afV~f~~~~~A~~A~~~l~g~~~~- 88 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVK-KSDVETIFSKYGRVAGCSV------------HKGYAFVQYSNERHARAAVLGENGRVLA- 88 (110)
T ss_dssp CTTCSSEEEECSCCCSSCC-HHHHHHHHGGGSCCSEEEE------------ETTEEEEECSSSHHHHHHHHHHTTCEET-
T ss_pred CCCCCcEEEEeCCCcccCC-HHHHHHHHHhCCCeEEEEE------------eCCEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 4456689999999998 65 8899999999999999984 4899999999999999999999999987
Q ss_pred ceeeceeeeeeecCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~ 286 (411)
-+.|+|+.+......
T Consensus 89 ---g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 89 ---GQTLDINMAGEPKPD 103 (110)
T ss_dssp ---TEECCEEESCCCCSC
T ss_pred ---CeEEEEEECCCCCCC
Confidence 356788887654443
No 140
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=111.39 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 192 PSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 192 ~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.++-+|||+|||. ..+ +.||+++|..+|.|.+|++ ..+ ||||||+|++.++|.++|+.|||....+.
T Consensus 13 ~p~~~l~V~nLp~~~~t-e~dL~~lF~~fG~V~~v~i--~~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~- 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL-RYQLLQLVEPFGVISNHLI--LNK--------INEAFIEMATTEDAQAAVDYYTTTPALVF- 80 (102)
T ss_dssp CCCCEEEEESCCCSSSH-HHHHHTTTGGGSCEEEEEE--CSS--------SSCEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred CCCCEEEEeCCCCCcCC-HHHHHHHHHhcCCEEEEEE--EcC--------CCEEEEEECCHHHHHHHHHHHcCCCceEC-
Confidence 4688999999999 854 8899999999999999983 333 79999999999999999999998653321
Q ss_pred eeceeeeeeecCCC
Q 015240 271 VQKQIRCEMVNSSS 284 (411)
Q Consensus 271 VEK~ikce~~~~~S 284 (411)
-++|+|+.+..+.
T Consensus 81 -Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 -GKPVRVHLSQKYK 93 (102)
T ss_dssp -TEECEEEEECCCT
T ss_pred -CcEEEEEECCCCC
Confidence 3567888877543
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=2.3e-13 Score=105.68 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=65.8
Q ss_pred CCCCCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 189 EDMPSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
...+++-+|||+|||. ..+ +.+|+.+|..+|.|.++++ .||||||+|.+.++|.++|+.+||..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t-~~~L~~~F~~~G~v~~v~i------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVS-KEDLFRIFSPYGHIMQINI------------KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp --CCTTCEEEEESCCSSCCC-HHHHHHHHGGGSCEEEEEE------------CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCCCEEEEeCCCcccCC-HHHHHHHHHhcCCEEEEEE------------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4456889999999997 755 8899999999999999984 3899999999999999999999999987
Q ss_pred cceeeceeeeeeecCC
Q 015240 268 FGKVQKQIRCEMVNSS 283 (411)
Q Consensus 268 fgKVEK~ikce~~~~~ 283 (411)
+ +.++++.+..+
T Consensus 84 g----~~l~V~~a~~~ 95 (97)
T 2xnq_A 84 G----KKLILEVSSSN 95 (97)
T ss_dssp T----EECEEEECCCC
T ss_pred C----EEEEEEecCCC
Confidence 3 55677776554
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=114.95 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=68.6
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeec---cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPV---VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpa---v~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
...+.+|||+|||..++ ..+|+.+|..+|.|.++.+. .+..++|| .+||||||+|.+.++|.++|+.+||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~~~~~~~~di~~~~~g--~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQ-EKDLKYIFGRYVDFSSETQRIMFDIRLMKEG--RMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCC-HHHHHHHHGGGCCTTCHHHHHHCEEEEEEET--TTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcccccccceeeEEeccCC--CcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 34568999999999865 88999999999998875211 12223465 88999999999999999999999999986
Q ss_pred cceeeceeeeeeecCC
Q 015240 268 FGKVQKQIRCEMVNSS 283 (411)
Q Consensus 268 fgKVEK~ikce~~~~~ 283 (411)
+ +.|+++.+...
T Consensus 119 g----~~l~V~~a~~~ 130 (143)
T 3egn_A 119 G----KPMVVQFARSA 130 (143)
T ss_dssp T----EECEEEECCCS
T ss_pred C----cEEEEEECCCC
Confidence 3 56777777654
No 143
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=4.9e-15 Score=116.79 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeE--------EeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhC
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIIN--------IIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFS 262 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvis--------Ikpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~N 262 (411)
.++.-+|||+|||...+ ..+|+.+|..+|.|.+ |+ ...++.|| .+||||||+|.+.++|.++|+.||
T Consensus 4 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~~~~~~~~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVT-IESVADYFKQIGIIKTNKKTGQPMIN--LYTDRETG--KLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 45678999999999854 7799999999999988 65 55676786 899999999999999999999999
Q ss_pred CceeccceeeceeeeeeecCCCCCC
Q 015240 263 RQIIAFGKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 263 Gq~~~fgKVEK~ikce~~~~~S~~~ 287 (411)
|..|. -+.|+|+.+..+....
T Consensus 79 g~~~~----g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 79 GKEFS----GNPIKVSFATRRADFN 99 (116)
Confidence 99987 4577888877665543
No 144
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.2e-13 Score=108.09 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=67.1
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC--ceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR--QIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG--q~~~f 268 (411)
.+++-+|||+|||...+ +.||+++|..+|.|.+|++. .+ ||||||+|++.++|.++|+.|+| ..|.
T Consensus 12 ~~p~~~l~V~nLp~~~t-e~~L~~~F~~fG~v~~v~i~--~~--------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~- 79 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT-ETEVIALGLPFGKVTNILML--KG--------KNQAFLELATEEAAITMVNYYSAVTPHLR- 79 (101)
T ss_dssp SSCCSEEEEESCCTTCC-HHHHHHTTTTTSCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHHHSCCEET-
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEE--CC--------CCEEEEEECCHHHHHHHHHHhccCCceEC-
Confidence 35678999999999865 88999999999999999733 22 89999999999999999998864 4454
Q ss_pred ceeeceeeeeeecCCCCCC
Q 015240 269 GKVQKQIRCEMVNSSSSNS 287 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~~~ 287 (411)
-++|+|+.+..+....
T Consensus 80 ---Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 80 ---NQPIYIQYSNHKELKT 95 (101)
T ss_dssp ---TEECEEEECSCSSCCC
T ss_pred ---CcEEEEEEcCcccCcC
Confidence 3678888887666554
No 145
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=1.3e-13 Score=110.79 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCC---eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG---IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg---visIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
..++.+|||+|||..++ +.||+++|..+|. |.+|++ ..++. | .+||||||+|.+.++|.++|+ +||+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~~~~v~~v~i--~~~~~-g--~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCS-IEDVQNFLSDCTIHDGVAGVHF--IYTRE-G--RQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp BCCCCEEEEESCCTTCC-HHHHHHHTTTSCBTTGGGGEEE--EECSS-S--CEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHHHHcCCccCceeEEE--EECCC-C--CCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 45678999999999975 8899999999998 788874 34432 3 899999999999999999999 9999987
Q ss_pred c
Q 015240 268 F 268 (411)
Q Consensus 268 f 268 (411)
+
T Consensus 87 g 87 (118)
T 2db1_A 87 H 87 (118)
T ss_dssp T
T ss_pred C
Confidence 4
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.6e-13 Score=104.02 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.+.+-+|||+|||...+ +.+|+.+|..+|.|.++++. .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~-~~~l~~~f~~~G~i~~~~~~----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-- 90 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFAT-EADLIPLFQNFGFILDFKHY----------PEKGCCFIKYDTHEQAAVCIVALANFPFQG-- 90 (101)
T ss_dssp CSSCCEEEEESCCTTCC-HHHHHHHHHTTSCCSEEEEE----------TTTTEEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCEEEEcCCCcccC-HHHHHHHHHhCCCEEEEEEe----------cCCCEEEEEECCHHHHHHHHHHhCCCeECC--
Confidence 34678999999999865 88999999999999999843 248999999999999999999999999874
Q ss_pred eeceeeeeeec
Q 015240 271 VQKQIRCEMVN 281 (411)
Q Consensus 271 VEK~ikce~~~ 281 (411)
+.++|+.+.
T Consensus 91 --~~l~V~~a~ 99 (101)
T 2la4_A 91 --RNLRTGWGK 99 (101)
T ss_dssp --EECCCCBCC
T ss_pred --eEEEEEecc
Confidence 445555544
No 147
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=112.31 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC--ceeccc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR--QIIAFG 269 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG--q~~~fg 269 (411)
+++.+|||+|||.+.+ +.||+++|..+|.|.+|++. .+ ||||||+|++.++|.++|+.++| ..|. |
T Consensus 14 ~~~~~LfV~nLp~~vt-e~dL~~lF~~fG~V~~v~i~--~~--------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~-G 81 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVT-EGEVISLGLPFGKVTNLLML--KG--------KNQAFIEMNTEEAANTMVNYYTSVTPVLR-G 81 (105)
T ss_dssp CCCCEEEECSCCTTSC-HHHHHHHHHHHCCEEEEEEE--TT--------TTEEEEEESSHHHHHHHHHHHTTSCCEET-T
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEE--cC--------CCEEEEEECCHHHHHHHHHHhccCCceEC-C
Confidence 4678999999999865 88999999999999999843 22 89999999999999999999875 5554 3
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
++|+|+.+..+.....
T Consensus 82 ---r~l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 82 ---QPIYIQFSNHKELKTD 97 (105)
T ss_dssp ---EECCBCCCSSSSCCCT
T ss_pred ---EEEEEEEcCCCCCCcc
Confidence 5788888876655443
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.45 E-value=2.4e-13 Score=116.83 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
.+.-+|||||||..++ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.+.+
T Consensus 13 ~p~~tlfVgnLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g--- 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVT-EAMLYEKFSPAGPILSIR--VCRDMITR--RSLGYAYVNFQQPADAERALDTMNFDVIKG--- 84 (213)
T ss_dssp --CCEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHhhCCEEEEE--EecccCCC--CccccccceeCCHHHHHHHHHHhhhhhcCC---
Confidence 3556899999999865 889999999999999998 56677787 899999999999999999999999999874
Q ss_pred eceeeeeee
Q 015240 272 QKQIRCEMV 280 (411)
Q Consensus 272 EK~ikce~~ 280 (411)
+.+++..+
T Consensus 85 -~~i~~~~~ 92 (213)
T 4f02_A 85 -KPVRIMWS 92 (213)
T ss_dssp -EECEEEEC
T ss_pred -cccccccc
Confidence 34444443
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=108.03 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=61.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCC---eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCce
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG---IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQI 265 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg---visIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~ 265 (411)
.....+.+|||+|||..++ +.||+++|..+|. |.+|+ ...++. | .+||||||+|.+.++|.++|+ +||+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~g~~~~v~~v~--i~~~~~-g--~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCT-MEDVLNFFSDCRIRNGENGIH--FLLNRD-G--KRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp CCCSSCCEEEEECCCSSCC-SHHHHHHTTTSCBTTTTTTEE--CCCCTT-S--TTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCCCCccEEEEeCCCCCCC-HHHHHHHHHhcCCcCCcceEE--EEECCC-C--CEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 3446789999999999875 8899999999777 88887 444543 4 899999999999999999999 99988
Q ss_pred ecc
Q 015240 266 IAF 268 (411)
Q Consensus 266 ~~f 268 (411)
|.+
T Consensus 79 ~~g 81 (107)
T 2lmi_A 79 MGQ 81 (107)
T ss_dssp SSS
T ss_pred eCC
Confidence 763
No 150
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=110.51 Aligned_cols=82 Identities=20% Similarity=0.132 Sum_probs=67.7
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+++-+|||+|||.+.+ +.+|+++|..+|.|.+++.. . .||||||.|++.++|.++|+.+||..+.+
T Consensus 16 ~~~~ps~~l~V~NLp~~~t-e~~L~~lF~~fG~V~~v~i~--~--------~kg~AFVef~~~~~A~~Av~~ln~~~~~i 84 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVV-EADLVEALQEFGPISYVVVM--P--------KKRQALVEFEDVLGACNAVNYAADNQIYI 84 (100)
T ss_dssp -CCCCCSEEEEESCCTTCC-HHHHHHHHGGGSCEEEEEEE--T--------TTTEEEEEESSHHHHHHHHHHHHHSCEEE
T ss_pred ccCCCCcEEEEeCCCCCCC-HHHHHHHHhccCCEEEEEEE--c--------CCCEEEEEECCHHHHHHHHHHhcCCCcee
Confidence 3446788999999999865 88999999999999999742 2 38999999999999999999999998654
Q ss_pred ceeeceeeeeeecCC
Q 015240 269 GKVQKQIRCEMVNSS 283 (411)
Q Consensus 269 gKVEK~ikce~~~~~ 283 (411)
+ -++|+++.++.+
T Consensus 85 ~--Gr~i~V~~S~~k 97 (100)
T 3r27_A 85 A--GHPAFVNYSTSQ 97 (100)
T ss_dssp T--TEEEEEEECSCS
T ss_pred C--CcEEEEEecccc
Confidence 2 357888877654
No 151
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.44 E-value=4e-13 Score=105.12 Aligned_cols=79 Identities=19% Similarity=0.118 Sum_probs=66.5
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
+.+-+|||+|||...+ ..+|+.+|..+|.|.+|++. .++ .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 6 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~v~i~--~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 74 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT-AEEMYDIFGKYGPIRQIRVG--NTP-----ETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--- 74 (115)
T ss_dssp TCCSEEEEESCCTTCC-HHHHHHHHHTTSCEEEEEEE--CST-----TTTTCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--eCC-----CCCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4678999999999865 88999999999999999854 332 449999999999999999999999999874
Q ss_pred eceeeeeeecC
Q 015240 272 QKQIRCEMVNS 282 (411)
Q Consensus 272 EK~ikce~~~~ 282 (411)
+.++|+.+..
T Consensus 75 -~~l~v~~a~~ 84 (115)
T 3lqv_A 75 -RYLVVLYYNA 84 (115)
T ss_dssp -CBCEEEECCH
T ss_pred -eEEEEEEecC
Confidence 4567776654
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-13 Score=101.91 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=64.4
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCee-EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC-ceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII-NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR-QIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi-sIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG-q~~~f 268 (411)
.+..-+|||+|||...+ +.+|+.+|..+|.++ .+.. .+||||||+|.+.++|.++|+.+|| ..|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~vv~~~~~-----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVT-ADDLRQLFGDRKLPLAGQVL-----------LKSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCCCEEEECCCTTCC-HHHHHHHHHHTTCCCSSCEE-----------EETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHHHHcCCceEEEEE-----------cCCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 45667999999999865 889999999999944 3331 2489999999999999999999999 88763
Q ss_pred ceeeceeeeeeecCCCC
Q 015240 269 GKVQKQIRCEMVNSSSS 285 (411)
Q Consensus 269 gKVEK~ikce~~~~~S~ 285 (411)
+.++++.+..+..
T Consensus 73 ----~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 73 ----KIMEVDYSVSKKL 85 (93)
T ss_dssp ----EECEEEECCCCCC
T ss_pred ----EEEEEEEccCccc
Confidence 5677887766544
No 153
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=6.9e-14 Score=107.38 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc--c
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF--G 269 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f--g 269 (411)
...-+|||+|||...+ +.+|+.+|..+|.|.+++ ...++ || .+||||||+|.+.++|.++|+ ||+.+.+ +
T Consensus 7 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~-~g--~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l 78 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMD-ETEIRSFFARYGSVKEVK--IITDR-TG--VSKGYGFVSFYNDVDVQKIVE--SQINFHGKKL 78 (102)
T ss_dssp EEEEEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--EEECT-TS--CEEEEEEEEESSCCCHHHHTT--CCCEETTEEC
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHhCCCeEEEE--EEECC-CC--CccceEEEEECCHHHHHHHHh--CCCeECCEEE
Confidence 3567999999999865 889999999999999998 44454 65 899999999999999999999 7766665 4
Q ss_pred eeeceee
Q 015240 270 KVQKQIR 276 (411)
Q Consensus 270 KVEK~ik 276 (411)
+|..+++
T Consensus 79 ~v~~a~~ 85 (102)
T 2xs2_A 79 KLGPAIR 85 (102)
T ss_dssp EEEEEEE
T ss_pred EEEECCc
Confidence 4455543
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=5.2e-13 Score=100.92 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=64.1
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.+.+|||+|||...+ +.+|+++|..+ +|.++++. .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 4 ~~~~l~V~nLp~~~t-~~~l~~~F~~~-~v~~~~i~----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---- 67 (88)
T 1wg1_A 4 GSSGILVKNLPQDSN-CQEVHDLLKDY-DLKYCYVD----------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---- 67 (88)
T ss_dssp CCCCEEEESCCSSCC-HHHHHHHTCSS-CCCCEEEE----------GGGTEEEECCSCHHHHHHHHHHHTTEEETT----
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHhhC-CeEEEEEe----------CCCcEEEEEECCHHHHHHHHHHhCCCeECC----
Confidence 467899999999865 88999999999 99999752 459999999999999999999999999874
Q ss_pred ceeeeeeecCCC
Q 015240 273 KQIRCEMVNSSS 284 (411)
Q Consensus 273 K~ikce~~~~~S 284 (411)
+.++++.+....
T Consensus 68 ~~l~V~~a~~~~ 79 (88)
T 1wg1_A 68 KDLIVQLQPTDA 79 (88)
T ss_dssp EEEEEEECCCCC
T ss_pred cEEEEEEcCCCc
Confidence 456676665443
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=5.6e-13 Score=106.02 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
.+.+|||+|||...+ +.+|+.+|..+|.|.+|++. .+||||||+|.+.++|.++|+.+||+.|. -
T Consensus 9 ~~~~l~V~nLp~~~t-e~~L~~~F~~~G~i~~v~i~----------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g 73 (111)
T 1whx_A 9 SKTVILAKNLPAGTL-AAEIQETFSRFGSLGRVLLP----------EGGITAIVEFLEPLEARKAFRHLAYSKFH----H 73 (111)
T ss_dssp EEEEEEEESCCTTCC-HHHHHHHHHTTSCEEEEECC----------SSSSCEEEEESCHHHHHHHHHHHTTCBSS----S
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEe----------CCCCEEEEEeCCHHHHHHHHHHhCCCEEC----C
Confidence 467999999999865 88999999999999999843 24899999999999999999999999987 4
Q ss_pred ceeeeeeecCCC
Q 015240 273 KQIRCEMVNSSS 284 (411)
Q Consensus 273 K~ikce~~~~~S 284 (411)
+.|+|+.+....
T Consensus 74 ~~l~V~~a~~~~ 85 (111)
T 1whx_A 74 VPLYLEWAPIGV 85 (111)
T ss_dssp SBCEEEEEETTT
T ss_pred eEEEEEECCCCc
Confidence 567777776543
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-12 Score=100.08 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
...-+|||+|||...+ +.+|+.+|..+|.|.+| ..++.|| + ||||+|.+.++|.++|+ +||+.|.+
T Consensus 6 ~~~~~l~V~nl~~~~t-~~~l~~~F~~~G~v~~v----~~~~~~g----~-~afV~f~~~~~a~~ai~-l~g~~~~g--- 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD-SAQLSEYFLAFGPVASV----VMDKDKG----V-FAIVEMGDVGAREAVLS-QSQHSLGG--- 71 (94)
T ss_dssp TTCCEEEEECCCTTCC-HHHHHHHGGGTSCEEEE----EECSSSC----C-EEEEEESSHHHHHHHHT-CSCCEETT---
T ss_pred CCCCEEEEECCCCCCC-HHHHHHHHHhcCCeEEE----EEcCCCC----c-EEEEEECCHHHHHHHHh-cCCeEECC---
Confidence 3456999999999865 88999999999999987 5566676 4 99999999999999999 99999885
Q ss_pred eceeeeeeec
Q 015240 272 QKQIRCEMVN 281 (411)
Q Consensus 272 EK~ikce~~~ 281 (411)
+.++++.+.
T Consensus 72 -~~l~V~~a~ 80 (94)
T 2e5g_A 72 -HRLRVRPRE 80 (94)
T ss_dssp -EECCCBCSC
T ss_pred -EEEEEEECC
Confidence 345555443
No 157
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.1e-13 Score=111.42 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=67.2
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+++-+|||+|||.+.+ +.||+++|..+|.|.+|++. .+ ||||||+|++.++|.++|+.+||..+.+.
T Consensus 27 ~~~ps~~LfVgNLp~~vt-e~dL~~lF~~fG~V~~v~i~--~~--------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVT-EGEVISLGLPFGKVTNLLML--KG--------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CSSCCSEEEEESCCTTCC-HHHHHHHHTTTSCCCEEEEE--GG--------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred cCCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCEEEEEEe--CC--------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 345788999999999865 88999999999999999843 22 89999999999999999999986532221
Q ss_pred eeeceeeeeeecCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSN 286 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~ 286 (411)
-++|+|+.+..+...
T Consensus 96 --Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 96 --GQPIYIQFSNHKELK 110 (119)
T ss_dssp --TBCCEEEECSSSSCC
T ss_pred --CeEEEEEEccCCCCC
Confidence 357888887655443
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=5.1e-13 Score=106.07 Aligned_cols=79 Identities=22% Similarity=0.179 Sum_probs=65.5
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeecee
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQI 275 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~i 275 (411)
+|||+|||...+ ..+|+++|+.+|.|.+|++. .++ + +.+||||||+|.+.++|.++++.+||+.|. .+.+
T Consensus 2 ~l~V~nlp~~~t-~~~l~~~f~~~G~i~~v~i~--~~~-~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i 71 (166)
T 3md3_A 2 VLYVGNLDKAIT-EDILKQYFQVGGPIANIKIM--IDK-N--NKNVNYAFVEYHQSHDANIALQTLNGKQIE----NNIV 71 (166)
T ss_dssp EEEEEEEETTCC-HHHHHHHHGGGSCEEEEEEE--CCC-C---CCEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred EEEECCCCCcCC-HHHHHHHHHhcCCeEEEEEE--ECC-C--CCCCCEEEEEeCCHHHHHHHHHHcCCCccC----CCee
Confidence 799999999865 88999999999999999843 443 2 268999999999999999999999999987 3566
Q ss_pred eeeeecCCC
Q 015240 276 RCEMVNSSS 284 (411)
Q Consensus 276 kce~~~~~S 284 (411)
+++.+....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 666665443
No 159
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=7.8e-13 Score=109.28 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=68.4
Q ss_pred CCCccEEEEcCCCCC-CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 191 MPSGIRVRLLNLPKK-KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk-~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.+++.+|||+|||.. .+ +.||+++|..+|.|.+|++. . .||||||+|.+.++|.++|+.|||....+.
T Consensus 22 ~~p~~~l~V~NLp~~~~t-e~~L~~lF~~fG~V~~v~i~--~--------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYS-DSAVLKLAEPYGKIKNYILM--R--------MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESCCCSSCC-SHHHHTTTTTTSCCSEEEEE--T--------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCCCCccCC-HHHHHHHHHhcCCEEEEEEe--c--------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 557899999999996 65 88999999999999999842 1 289999999999999999999987553331
Q ss_pred eeeceeeeeeecCCCCCCC
Q 015240 270 KVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 270 KVEK~ikce~~~~~S~~~~ 288 (411)
-+.|+|+.+...+....
T Consensus 91 --Gr~l~V~~a~~~~~~~~ 107 (112)
T 1x4f_A 91 --GRCVKVDLSEKYKKLVS 107 (112)
T ss_dssp --SSCCEEEEECSCSSSSC
T ss_pred --CEEEEEEECcccccccc
Confidence 36788888876654433
No 160
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.42 E-value=4.3e-13 Score=111.82 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=62.5
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.++-+|||+|||.+.+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+.+||+.|.+
T Consensus 26 ~~~~~l~V~nLp~~~t-~~~l~~~f~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELG-EDTIRQAFAPFGPIKSID--MSWDSVTM--KHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HHHTEEEEECCCTTCC-HHHHHHHHGGGSCEEEEE--ECCC-CC---CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred CcCCEEEEECCCCCCC-HHHHHHHHHhCCCEEEEE--EeecCCCC--ccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 3567999999999865 889999999999999998 45566676 899999999999999999999999999874
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=5.7e-13 Score=109.50 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..+.-+|||+|||...+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+. +|+.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-- 81 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT-DESLRSHFEQWGTLTDCV--VMRDPNTK--RSRGFGFVTYATVEEVDAAMNA-RPHKVDG-- 81 (196)
T ss_dssp CGGGGEEEEESCCTTCC-HHHHHHHHGGGSCEEEEE--EEECTTTC--CEEEEEEEEESSHHHHHHHHHT-CSCEETT--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEEcCCCC--CccceEEEEeCCHHHHHHHHhc-CCCEECC--
Confidence 45678999999999865 889999999999999998 55666676 8999999999999999999987 8888764
Q ss_pred eeceeeeeeecC
Q 015240 271 VQKQIRCEMVNS 282 (411)
Q Consensus 271 VEK~ikce~~~~ 282 (411)
+.+++..+..
T Consensus 82 --~~l~v~~~~~ 91 (196)
T 1l3k_A 82 --RVVEPKRAVS 91 (196)
T ss_dssp --EECEEEECCC
T ss_pred --EEeeeecccC
Confidence 3445555443
No 162
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.42 E-value=6.3e-13 Score=105.51 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=66.0
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.....+-+|||+|||...+ +.+|+.+|..+|.|.+|++ +||||||+|.+.++|.++|+.+||..|.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t-~~~L~~~F~~~G~i~~v~i------------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQ-ESELNEIFGPFGPMKEVKI------------LNGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp --CCSCSEEEECSSCTTCC-HHHHHHHHTTTSCCCEEEE------------ETTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCEEEEEE------------ECCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3446778999999999865 8899999999999999973 28999999999999999999999999863
Q ss_pred ceeeceeeeeeecCCC
Q 015240 269 GKVQKQIRCEMVNSSS 284 (411)
Q Consensus 269 gKVEK~ikce~~~~~S 284 (411)
+.++++.+....
T Consensus 93 ----~~l~V~~a~~~~ 104 (108)
T 2jvo_A 93 ----QPLEVVYSKLPA 104 (108)
T ss_dssp ----EECEEESCSCCC
T ss_pred ----eEEEEEEecCCC
Confidence 456777665543
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.42 E-value=4.6e-13 Score=115.48 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
...+.+|||+|||...+ ..+|+++|..+|.|.+|+ ...++ || .+||||||+|.+.++|.++|+.|||+.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~t-e~~L~~~F~~~G~I~~v~--i~~d~-~g--~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-- 156 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVS-DADIQELFAEFGTLKKAA--VDYDR-SG--RSLGTADVHFERRADALKAMKQYKGVPLDG-- 156 (177)
T ss_dssp CTTCEEEEEECCCSCCC-HHHHHHHHHHTSCCSEEE--ECCCT-TS--SCSCCEEEEESCHHHHHHHHHHSTTCBCSS--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEE--EEECC-CC--CEeeEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 35688999999999865 889999999999999998 55555 65 889999999999999999999999998864
Q ss_pred eeceeeeeeecCC
Q 015240 271 VQKQIRCEMVNSS 283 (411)
Q Consensus 271 VEK~ikce~~~~~ 283 (411)
+.|+|+.+...
T Consensus 157 --r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 --RPMDIQLVASQ 167 (177)
T ss_dssp --SBCEEEEESSG
T ss_pred --EEEEEEEecCC
Confidence 56777777554
No 164
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=100.01 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
.+..-+|||+|||...+ +.+|+.+|..+|.|. ++ .. |+ .+||||||+|.+.++|.++|+.+||..|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t-~~~l~~~F~~~G~v~-~~--~~----~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 83 (97)
T 2e5j_A 16 APLAADVYVGNLPRDAR-VSDLKRALRELGSVP-LR--LT----WQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-- 83 (97)
T ss_dssp SCCCCEEEEECCCTTCC-HHHHHHHHHHTTCCC-SE--EE----EE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSS--
T ss_pred CCCCCEEEEeCCCCcCc-HHHHHHHHHhcCCEE-EE--EE----cC--CCCcEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 34567999999999865 889999999999984 33 11 22 569999999999999999999999999874
Q ss_pred eeceeeeeeecCCC
Q 015240 271 VQKQIRCEMVNSSS 284 (411)
Q Consensus 271 VEK~ikce~~~~~S 284 (411)
+.|+++.+..+.
T Consensus 84 --~~l~V~~a~~~~ 95 (97)
T 2e5j_A 84 --DTLRVALARQQR 95 (97)
T ss_dssp --SCCEEEECCCCC
T ss_pred --cEEEEEEcCCCC
Confidence 567777776543
No 165
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.3e-13 Score=97.51 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=58.7
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh-CCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF-SRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~-NGq~~~f 268 (411)
.+..-+|||+|||...+ +.+|+.+|..+|.|.+++... .||||||+|.+.++|.++|+.+ ||..|.+
T Consensus 9 ~~~~~~l~V~~l~~~~t-~~~l~~~f~~~G~i~~~~~~~----------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT-ETDLRNHFYQFGEIRTITVVQ----------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CSSCCCEEEECCTTTSC-HHHHHHHHHTTSCEEEEEEEG----------GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCccEEEEcCCCCCCC-HHHHHHHHHhCCCEeEEEEEC----------CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 35678999999999865 889999999999999998432 2899999999999999999988 9999875
No 166
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=4.4e-13 Score=112.74 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCC---eeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPG---IINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGg---visIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
...++.+|||+|||.+.+ +.||+++|..+|. |.+|++ ..++. | .+||||||+|.+.++|.++|+ +||+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~t-e~dL~~~F~~~G~v~~v~~v~i--~~d~~-g--~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCS-VEDVQNFLSDCTIHDGAAGVHF--IYTRE-G--RQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp SCCTTCEEEEESCCTTCC-HHHHHHHTTTCCCSSSSTTEEE--EECSS-S--CEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHHHhCCcCceeEEEE--EECCC-C--CCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 345788999999999975 8899999999999 778873 44443 4 899999999999999999999 999998
Q ss_pred ccceeeceeeeeee
Q 015240 267 AFGKVQKQIRCEMV 280 (411)
Q Consensus 267 ~fgKVEK~ikce~~ 280 (411)
.+ +.|++..+
T Consensus 113 ~g----r~i~V~~a 122 (136)
T 2hgl_A 113 GH----RYIEVFKS 122 (136)
T ss_dssp SS----SEEEEEEC
T ss_pred CC----EEEEEEEC
Confidence 74 34455443
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.2e-12 Score=97.83 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=66.0
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..+.+|||+|| ..+ +.+|+.+|..+|.|.+|++. .+||||||+|.+.++|.++|+.+||..|.
T Consensus 13 ~~~~~l~V~n~--~~t-~~~l~~~F~~~G~i~~v~i~----------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---- 75 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT-PTLLRGAFSPFGNIIDLSMD----------PPRNCAFVTYEKMESADQAVAELNGTQVE---- 75 (97)
T ss_dssp CCCSEEEEECS--SCC-HHHHHHHHTTTSCEEEEEEE----------TTTTEEEEEESSHHHHHHHHHHTTTEEET----
T ss_pred CCCCEEEEcCC--CCC-HHHHHHHHhhCCCEEEEEec----------CCCCEEEEEECCHHHHHHHHHHhCCCeEC----
Confidence 46789999997 333 88999999999999999841 45999999999999999999999999986
Q ss_pred eceeeeeeecCCCCCCC
Q 015240 272 QKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 272 EK~ikce~~~~~S~~~~ 288 (411)
-+.|+++.+..+....+
T Consensus 76 g~~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 76 SVQLKVNIARKQPMLDS 92 (97)
T ss_dssp TEEEEEECCSSCCCCCS
T ss_pred CeEEEEEECCCCCCCCC
Confidence 35677887776655443
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=6.5e-13 Score=98.42 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=58.7
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccC----C-------CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGV----P-------GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~v----G-------gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
...-+|||+|||...+ +.+|+++|..+ | .|.+++.. . .||||||+|.+.++|.++| .
T Consensus 4 ~~~~~l~V~nLp~~~t-~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~--~--------~kg~afV~f~~~~~a~~A~-~ 71 (87)
T 2hzc_A 4 GSARRLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--Q--------DKNFAFLEFRSVDETTQAM-A 71 (87)
T ss_dssp GGGGEEEEESCCTTCC-HHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC--S--------SSSEEEEEESSHHHHHHHG-G
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHHhhhcccccCCCCcceEEEec--C--------CCcEEEEEcCCHHHHHHHH-h
Confidence 3567999999999865 88999999999 7 78888632 1 1899999999999999999 9
Q ss_pred hCCceecc--ceeec
Q 015240 261 FSRQIIAF--GKVQK 273 (411)
Q Consensus 261 ~NGq~~~f--gKVEK 273 (411)
+||+.|.+ ++|++
T Consensus 72 l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 72 FDGIIFQGQSLKIRR 86 (87)
T ss_dssp GTTCEETTEECEEEC
T ss_pred cCCCEECCeEEEEeC
Confidence 99999886 55554
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=4.5e-12 Score=106.18 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccce-EEEeecCHHHHHHHHHHhCCceecccee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGF-AFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGF-AFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
.-.+|||+|||...+ +.+|+++|..+|.|.+|++. .+ +|| |||.|.+.++|.++|+.+||+.|.++
T Consensus 24 ~vl~l~V~NL~~~vt-~~~L~~~Fs~yG~V~~v~i~---~~-------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-- 90 (124)
T 2e5i_A 24 KVLLLSIQNPLYPIT-VDVLYTVCNPVGKVQRIVIF---KR-------NGIQAMVEFESVLCAQKAKAALNGADIYAG-- 90 (124)
T ss_dssp SEEEEEEESCCSCCC-HHHHHHHHTTTSCEEEEEEE---ES-------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT--
T ss_pred cEEEEEEcCcCCCCC-HHHHHHHHHhcCCEEEEEEE---eC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCC--
Confidence 345678999999855 77999999999999999842 22 387 99999999999999999999999764
Q ss_pred eceeeeeeecCCCCCCCCC
Q 015240 272 QKQIRCEMVNSSSSNSVDG 290 (411)
Q Consensus 272 EK~ikce~~~~~S~~~~~~ 290 (411)
...|+++.+...+-....+
T Consensus 91 ~~~l~V~~Ak~~~l~v~~n 109 (124)
T 2e5i_A 91 CCTLKIEYARPTRLNVIRN 109 (124)
T ss_dssp BSEEEEECCSCSCCCCSSC
T ss_pred CeEEEEEEecCCcceeecC
Confidence 4577888877766544443
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.6e-13 Score=107.21 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...++.+|||+|||...+ ++||+++|..+ .|.+|++. .++ +| .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 12 ~~~~~~~v~V~nLp~~~t-e~dl~~~F~~~-~v~~v~i~--~d~-~g--~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 82 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAM-ENDVRDFFHGL-RVDAVHLL--KDH-VG--RNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ 82 (109)
T ss_dssp CCHHHHEEEEECCCSSCC-HHHHHHHTTTS-CCCEEEEC--CCT-TC--CCCSEEEEECSSHHHHHHHH-HTTTEEETT
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHhccC-CeeEEEEE--ECC-CC--CCCeEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 345678999999999865 88999999999 89999843 444 34 78999999999999999999 689998774
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=8e-13 Score=106.12 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=59.0
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
++-+|||+|||.+.+ +.+|+++|..+|.|.+|+ ...++.|| .+||||||+|.+.++|.++|+. ++.+.
T Consensus 2 ~~~~l~v~nLp~~~t-~~~l~~~F~~~G~i~~v~--i~~~~~~g--~~~g~afV~f~~~~~a~~A~~~--~~~~~ 69 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTT-EDNLREYFGKYGTVTDLK--IMKDPATG--RSRGFGFLSFEKPSSVDEVVKT--QHILD 69 (167)
T ss_dssp GGGEEEECSCCTTCC-HHHHHHHHTTTCCEEEEE--CCCCTTTS--SCCSCEEEEESSTHHHHHHHHS--CCEET
T ss_pred CCcEEEEeCCCCCCC-HHHHHHHHHhCCCEEEEE--EEECCCCC--CccceEEEEEccHHHHHHHHhc--ccccC
Confidence 467999999999865 889999999999999998 56676686 8999999999999999999995 44443
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=106.68 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=69.6
Q ss_pred CCCCccE-EEEcCCCCCCch---HHHHHHHhccCC-CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 015240 190 DMPSGIR-VRLLNLPKKKNI---HRDLKSAFKGVP-GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 190 ~~~dgvR-VrVGNLPkk~ni---~kDL~~aFk~vG-gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq 264 (411)
.+++..+ |||+|||.+.+. .++|.++|..+| .|+.| || |||||.|.+.+.|.++|+.+||+
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---------tg-----G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---------TG-----CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---------CT-----TCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---------ec-----CEEEEEECCHHHHHHHHHHhcCC
Confidence 4566777 999999999774 236889999995 99998 53 99999999999999999999999
Q ss_pred eeccceeeceeeeeeecCCCCCCCC
Q 015240 265 IIAFGKVQKQIRCEMVNSSSSNSVD 289 (411)
Q Consensus 265 ~~~fgKVEK~ikce~~~~~S~~~~~ 289 (411)
.|. -|+|++..+..+|..-..
T Consensus 70 ~l~----gr~i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 70 DVF----GNRIIVSFTPKNRELCET 90 (96)
T ss_dssp CSS----SSCCEEESSCCSCCCCCC
T ss_pred ccC----CceEEEEecCCCcceeEe
Confidence 976 688999999888876553
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=2.4e-12 Score=109.45 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=77.7
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccce-EEEeecCHHHHHHHHHHhCCceeccce
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGF-AFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGF-AFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
..-.+|||+|||...+ +.+|+++|..+|.|.+|++.. . . ||| |||.|.+.++|.++|+.+||+.|.+|
T Consensus 26 s~VL~I~V~NL~~~vt-e~~L~~lFs~yG~V~~V~i~~--~--~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~- 94 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVT-LDVLHQIFSKFGTVLKIITFT--K--N-----NQFQALLQYADPVSAQHAKLSLDGQNIYNA- 94 (130)
T ss_dssp CSEEEEEEESCCSCCC-HHHHHHHHTTSSCEEEEEEEE--E--T-----TEEEEEEEESCHHHHHHHHHHHTTCEEETT-
T ss_pred CceEEEEECCCCCCCC-HHHHHHHHhCcCCEEEEEEEc--C--C-----CCcEEEEEECCHHHHHHHHHHcCCCeecCC-
Confidence 3557899999999865 889999999999999997432 1 1 799 99999999999999999999999875
Q ss_pred eeceeeeeeecCCCCCCCCCCCCCCCCCCCc
Q 015240 271 VQKQIRCEMVNSSSSNSVDGHSSDDTSGYPK 301 (411)
Q Consensus 271 VEK~ikce~~~~~S~~~~~~~s~~s~~~~p~ 301 (411)
-+.|+++.+...+-.-..++..+--++.|.
T Consensus 95 -~~~LrI~~ak~~~l~v~~n~~~srDyt~~~ 124 (130)
T 3zzy_A 95 -CCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 124 (130)
T ss_dssp -EEEEEEEECSCSSCCCCCCSSSEEETTCTT
T ss_pred -CcEEEEEecCCCceeEEecCCCcccCCCCC
Confidence 467888888777666665555444444444
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.37 E-value=1.1e-12 Score=127.82 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
....+|||+|||..++ ..+|..+|..+|.|+.|+ +..++.|| .++|||||+|.+.++|.+||+.|||+.|.+
T Consensus 100 ~~~~~lfV~nL~~~~t-e~~L~~~F~~~G~I~~v~--i~~d~~tg--~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g--- 171 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTT-ESKLRREFEVYGPIKRIH--MVYSKRSG--KPRGYAFIEYEHERDMHSAYKHADGKKIDG--- 171 (437)
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHHHcCCeeEEE--eeccCCCC--CccceEEEeeccHHHHHHHHHHcCCCEECC---
Confidence 4567999999999865 889999999999999998 56666686 999999999999999999999999999873
Q ss_pred eceeeeeeecCCC
Q 015240 272 QKQIRCEMVNSSS 284 (411)
Q Consensus 272 EK~ikce~~~~~S 284 (411)
+.|.|+++....
T Consensus 172 -r~i~V~~a~~~~ 183 (437)
T 3pgw_S 172 -RRVLVDVERGRT 183 (437)
T ss_pred -EEEEEEEeCCCC
Confidence 567777776543
No 175
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=1.5e-12 Score=103.76 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...+.+|||+|||..++ +.||+++|..+|.|..|++. .+ |||||+|.+.++|.++|+.|||+.|.+
T Consensus 13 ~r~~~~l~V~nLp~~~t-~~~l~~~F~~~G~v~~~~i~--~~---------g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGS-WQDLKDHMREAGDVCYADVY--RD---------GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp ----CCEEEEECCSSCC-TTHHHHHHGGGSCEEEEEEC--TT---------SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCCCcEEEEeCCCCCCC-HHHHHHHHHhcCCeEEEEEe--cC---------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34678999999999865 88999999999999999732 11 999999999999999999999999886
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.37 E-value=2e-12 Score=113.01 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCccEEEEcCCC-CCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 192 PSGIRVRLLNLP-KKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 192 ~dgvRVrVGNLP-kk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
+++.+|||+||| .+.+ ..+|+.+|..+|.|++|++ ..++ ||||||.|.+.++|.++|+.|||+.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~-~~~L~~~F~~~G~v~~v~i--~~~~-------~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 69 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN-CDRVFNVFCLYGNVEKVKF--MKSK-------PGAAMVEMADGYAVDRAITHLNNNFMFG-- 69 (205)
T ss_dssp CCCSEEEEECCCTTTCC-HHHHHHHHTTTSCEEEEEE--CTTS-------TTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCEEEEeCCCcccCC-HHHHHHHHHhcCCeEEEEE--ecCC-------CCEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 467899999999 7754 7899999999999999984 3332 8999999999999999999999999874
Q ss_pred eeceeeeeeecCCC
Q 015240 271 VQKQIRCEMVNSSS 284 (411)
Q Consensus 271 VEK~ikce~~~~~S 284 (411)
++|+|..+...+
T Consensus 70 --~~l~v~~s~~~~ 81 (205)
T 3tyt_A 70 --QKMNVCVSKQPA 81 (205)
T ss_dssp --EECEEEECSCSC
T ss_pred --ceEEEEEccCCc
Confidence 567777766544
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.35 E-value=8.4e-13 Score=111.61 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccce
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGK 270 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgK 270 (411)
...+.+|||+|||.+.+ ++||+++|..+| +++|+ ...++ +| .+||||||+|.+.++|.++| .+||+.|..
T Consensus 43 ~~~~~~lfV~nLp~~~t-e~dL~~~F~~~G-i~~v~--i~~d~-~g--~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-- 112 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKAT-ENDIYNFFSPLN-PVRVH--IEIGP-DG--RVTGEADVEFATHEEAVAAM-SKDRANMQH-- 112 (139)
T ss_dssp --CCCCEECCSCCTTCC-HHHHHHHHCSCC-CSEEE--CCCSS-SS--CSSCCCEEECSHHHHHHHHT-TCCSCSSSS--
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhcC-CeEEE--EEECC-CC--CCceEEEEEeCCHHHHHHHH-hhCCCEECC--
Confidence 34678999999999975 889999999999 88887 44554 34 89999999999999999999 789988763
Q ss_pred eeceeeeeeecC
Q 015240 271 VQKQIRCEMVNS 282 (411)
Q Consensus 271 VEK~ikce~~~~ 282 (411)
+.|++..+..
T Consensus 113 --R~i~V~~a~~ 122 (139)
T 2hgn_A 113 --RYIELFLNST 122 (139)
T ss_dssp --CCCCCEECCC
T ss_pred --EEEEEEECCC
Confidence 3455555443
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.8e-12 Score=95.63 Aligned_cols=78 Identities=12% Similarity=0.196 Sum_probs=60.1
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
...-+|||+|||...+ +.+|+.+|..+|.|.++++. .+ +||||||+|.+.++|.+ ++|+.+.+.
T Consensus 3 ~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i~--~~-------~~g~afV~f~~~~~a~~----~~~~~~~~~-- 66 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT-EDELREFFSQYGDVMDVFIP--KP-------FRAFAFVTFADDQIAQS----LCGEDLIIK-- 66 (88)
T ss_dssp SCCCEEEEESCCSSSC-HHHHHHHSTTTSCCCEEECC--SS-------CCSCCEEECSCHHHHHH----TTTCEEEET--
T ss_pred CCCcEEEEeCCCCCCC-HHHHHHHHHHcCCeeEEEEe--cC-------CCCEEEEEECCHHHHHH----HhcCCceeC--
Confidence 4568999999999865 88999999999999999843 22 69999999999999964 577766543
Q ss_pred eceeeeeeecCCCC
Q 015240 272 QKQIRCEMVNSSSS 285 (411)
Q Consensus 272 EK~ikce~~~~~S~ 285 (411)
.+.+++..+..+..
T Consensus 67 g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 67 GISVHISNAEPKHN 80 (88)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CEEEEEEecCCCCC
Confidence 24556665555443
No 179
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=2.9e-12 Score=98.62 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
..+...+|||||||...+ +.+|+++|+.+|.|.++++.. + +||||||+|.+.++|. .++|..+.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~t-e~~L~~~F~~~G~i~~v~i~~--~-------srGfaFV~F~~~~~A~----~~~~~~~~~~ 72 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMT-AEELQQFFCQYGEVVDVFIPK--P-------FRAFAFVTFADDKVAQ----SLCGEDLIIK 72 (89)
T ss_dssp ----CCEEEEESCCTTCC-HHHHHHHHTTTSCEEEEECCS--S-------CCSEEEEEESCHHHHH----HHTTCEEEET
T ss_pred CCCCCCEEEEeCCCCCCC-HHHHHHHHhccCCEEEEEEee--C-------CCCEEEEEECCHHHHH----HHcCCCcccC
Confidence 345788999999999865 889999999999999998442 2 6999999999999998 4788876642
Q ss_pred eeeceeeeeeecC
Q 015240 270 KVQKQIRCEMVNS 282 (411)
Q Consensus 270 KVEK~ikce~~~~ 282 (411)
-+.+.+..+..
T Consensus 73 --g~~v~v~~a~~ 83 (89)
T 3d2w_A 73 --GISVHISNAEP 83 (89)
T ss_dssp --TEEEEEEECC-
T ss_pred --CEEEEEEEcCC
Confidence 24455555543
No 180
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=108.17 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=59.5
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCe----eEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGI----INIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgv----isIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
..+..+|||+|||.+++ +.||+++|..+|.| ..|++ ..+ +|| .+||||||+|.+.++|.++|++ ||+.|
T Consensus 20 ~~~~~~v~V~nLp~~~t-e~dl~~~F~~~g~v~g~v~~v~i--~~d-~~g--r~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 20 KENQVIVRMRGLPFTAT-AEEVVAFFGQHCPITGGKEGILF--VTY-PDG--RPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCSCCEEEECSCCTTCC-HHHHHHHHHTTSCCTTGGGGEEE--EEC-TTS--CEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHhhCCccCCcceEEE--EEC-CCC--CEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 35678999999999975 88999999999875 46663 334 365 8999999999999999999997 99886
Q ss_pred cc
Q 015240 267 AF 268 (411)
Q Consensus 267 ~f 268 (411)
..
T Consensus 93 ~g 94 (123)
T 2dha_A 93 GK 94 (123)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 181
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=2.9e-12 Score=107.14 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=58.1
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCee--EEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGII--NIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvi--sIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
...-+|||+|||.+++ +.||+++|..+ +|+ +|+ ...++. | .+||||||+|.+.++|.++|++ +|+.|.+
T Consensus 40 ~~~~~lfVgnLp~~~t-e~dL~~~F~~~-~i~~~~v~--i~~d~~-G--rsrGfaFV~F~~~e~A~~Al~~-~~~~l~g 110 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT-KEEIVQFFSGL-EIVPNGIT--LPVDPE-G--KITGEAFVQFASQELAEKALGK-HKERIGH 110 (126)
T ss_dssp SSCCEEEEECCCTTCC-HHHHHHHTTTS-CEEEEEEE--CCCCSS-S--SSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred CCCCEEEEeCCCCCCC-HHHHHHHHhcC-CceeeEEE--EEECCC-C--CCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence 4567899999999975 88999999999 888 787 445543 4 8999999999999999999996 7777653
No 182
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=6.4e-12 Score=110.92 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceee
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQ 272 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVE 272 (411)
...+|||+|||...+ +.+|+++|..+|.|.+|++. .++ .||||||.|.+.++|.++|+.+||+.|.++ -
T Consensus 45 ~vl~l~VgNL~~~vt-ed~L~~~Fs~fG~V~~V~i~---~k~-----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g 113 (164)
T 1sjr_A 45 PVLRIIVENLFYPVT-LDVLHQIFSKFGTVLKIITF---TKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNA--C 113 (164)
T ss_dssp CEEEEEECSCCSCCC-HHHHHHHHHHHSCEEEEEEE---ESS-----SCEEEEEEESCHHHHHHHHHHSTTBCSSSS--C
T ss_pred ceEEEEEeCcCCCCC-HHHHHHHHHhcCCEEEEEEE---eCC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCC--C
Confidence 457899999999854 78999999999999999842 221 389999999999999999999999999753 3
Q ss_pred ceeeeeeecCCCCCCCCC
Q 015240 273 KQIRCEMVNSSSSNSVDG 290 (411)
Q Consensus 273 K~ikce~~~~~S~~~~~~ 290 (411)
+.|+++.+...+-....+
T Consensus 114 ~~L~V~~Ak~~~l~vk~n 131 (164)
T 1sjr_A 114 CTLRIDFSKLTSLNVKYN 131 (164)
T ss_dssp SCEEEEECSSSSCCCCCC
T ss_pred cEEEEEEecCCccccccc
Confidence 567788777665444333
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=1.1e-11 Score=108.87 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=68.1
Q ss_pred CCCccEEEEcCCCCCCchHHHHH----HHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLK----SAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~----~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
..+.-+|||+|||...+ +.+|+ ++|..+|.|.+|++.. || .+||||||+|.+.++|.++|+.+||..|
T Consensus 6 ~~~~~~l~V~nlp~~~~-~~~l~~~L~~~F~~~G~i~~v~~~~-----~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIK-KDELKKSLYAIFSQFGQILDILVSR-----SL--KMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCEEEEeCCCCCCC-HHHHHHHHHHHHhccCCeEEEEEcC-----CC--CcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 35678999999999865 77866 9999999999997432 54 7899999999999999999999999998
Q ss_pred ccceeeceeeeeeecCCC
Q 015240 267 AFGKVQKQIRCEMVNSSS 284 (411)
Q Consensus 267 ~fgKVEK~ikce~~~~~S 284 (411)
.+ +.|+|+.+...+
T Consensus 78 ~g----~~l~v~~a~~~~ 91 (282)
T 3pgw_A 78 YD----KPMRIQYAKTDS 91 (282)
T ss_pred CC----cEEEEEEeccCc
Confidence 74 667777775554
No 184
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.4e-12 Score=94.83 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..+.+|||+|||...+ +.+|+.+|..+|.|.+++ ....++.|| .|||+|.+.++|.++|+.+||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t-~~~l~~~F~~~G~v~~~~-~i~~~~~~~------~afV~f~~~~~a~~Ai~~l~g~~~~g--- 81 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ-WEVLDSLLVQYGVVESCE-QVNTDSETA------VVNVTYSSKDQARQALDKLNGFQLEN--- 81 (96)
T ss_dssp CSCCCEEEEEECSSSC-HHHHHHHHHHHSCEEEEE-EECCSSSSE------EEEEEESSHHHHHHHHHHHTTCBCSS---
T ss_pred CCCCEEEEEcCCCCCC-HHHHHHHHHhcCCeEEEE-EeecCCCCC------EEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 3567999999999865 889999999999999983 034555554 39999999999999999999999873
Q ss_pred eceeeeeeecCC
Q 015240 272 QKQIRCEMVNSS 283 (411)
Q Consensus 272 EK~ikce~~~~~ 283 (411)
+.|+++.+...
T Consensus 82 -~~l~V~~a~~~ 92 (96)
T 2e44_A 82 -FTLKVAYIPDE 92 (96)
T ss_dssp -CBCEEEECCCC
T ss_pred -cEEEEEEcCcc
Confidence 56777776654
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1e-11 Score=103.42 Aligned_cols=85 Identities=8% Similarity=0.099 Sum_probs=69.0
Q ss_pred CCccEEEE--cCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee-cc
Q 015240 192 PSGIRVRL--LNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII-AF 268 (411)
Q Consensus 192 ~dgvRVrV--GNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~-~f 268 (411)
+++-+||| ||||...+ +.+|+++|..+|.|.+|... ++ ||||||+|.+.++|.++|+.+||+.| ..
T Consensus 23 ~pt~~L~V~Ng~L~~~~t-e~~L~~~F~~fG~v~~v~i~------~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS-RNQLLPVLEKCGLVDALLMP------PN----KPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp SCCSEEEEETCTGGGTCC-HHHHHHHHHHHSCEEEEECC------TT----CSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCEEEEECCCCCCCCC-HHHHHHHHHhcCCeEEEEEe------CC----CCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 45678999 77999865 88999999999999998742 22 89999999999999999999999998 32
Q ss_pred -ceeeceeeeeeecCCCCCCC
Q 015240 269 -GKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 269 -gKVEK~ikce~~~~~S~~~~ 288 (411)
|. -+++.+..+..-+.+.|
T Consensus 92 lg~-g~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 92 LGQ-KITLYLNFVEKVQWSGP 111 (114)
T ss_dssp TSC-EEECEEEEESCCCCSSC
T ss_pred cCC-CcEEEEEecccCcccCC
Confidence 22 56778888776655544
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.28 E-value=2.3e-12 Score=104.87 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
...++-+|||+|||...+ +.+|+.+|..+|.+..+ .+.+++|| .+||||||+|.+.++|.++|+ +||+.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t-~~~l~~~f~~~g~~~~~---~~~~~~~~--~~~g~afV~f~~~~~a~~A~~-l~g~~~~g- 80 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKS-VAELKVAISELFAKNDL---AVVDVRTG--TNRKFGYVDFESAEDLEKALE-LTGLKVFG- 80 (175)
T ss_dssp SCSSSEEEEEECCCTTSC-HHHHHHHHHHHHHHHTC---CCCEEEEE--TTTTEEEEEESSHHHHHHHHH-GGGEEETT-
T ss_pred CCCCCcEEEEeCCCCCCC-HHHHHHHHHHhCCcceE---EEEECCCC--ccccEEEEEECCHHHHHHHHh-cCCCEeCC-
Confidence 345788999999999865 88999999999987763 34555665 889999999999999999995 99999883
Q ss_pred eeeceeeeeeecCC
Q 015240 270 KVQKQIRCEMVNSS 283 (411)
Q Consensus 270 KVEK~ikce~~~~~ 283 (411)
+.++++.+...
T Consensus 81 ---~~l~v~~~~~~ 91 (175)
T 1fje_B 81 ---NEIKLEKPKGR 91 (175)
T ss_dssp ---EEEEEECCCCS
T ss_pred ---eEEEEecCCCc
Confidence 56667666544
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=1.4e-11 Score=100.22 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=65.2
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..+.+|||+||. .+ +.+|+++|..+|.|.+|+.. .+||||||+|.+.++|.++|+.+||..|.
T Consensus 37 ~~~~~lfVgnl~--~t-e~~L~~~F~~~G~I~~v~i~----------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---- 99 (121)
T 2bz2_A 37 RKGNTLYVYGED--MT-PTLLRGAFSPFGNIIDLSMD----------PPRNCAFVTYEKMESADQAVAELNGTQVE---- 99 (121)
T ss_dssp CCCCEEEEECSS--CC-HHHHHHHHSTTCCCSCEEEE----------TTTTEEEEECSSHHHHHHHHHHHTTCBCS----
T ss_pred CCCCEEEEcCCC--CC-HHHHHHHHHccCCEEEEEEe----------CCCCEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence 568899999973 33 88999999999999999842 45999999999999999999999999986
Q ss_pred eceeeeeeecCCCCCC
Q 015240 272 QKQIRCEMVNSSSSNS 287 (411)
Q Consensus 272 EK~ikce~~~~~S~~~ 287 (411)
-+.++|+.+..+....
T Consensus 100 g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 100 SVQLKVNIARKQPMLD 115 (121)
T ss_dssp SCBCEEEECCSSCC--
T ss_pred CeEEEEEEeCCCCCCC
Confidence 3667888877665433
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=2.1e-11 Score=105.89 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=68.1
Q ss_pred CCCccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 191 MPSGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 191 ~~dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.+++-+|||+|||. ..+ +.+|+++|..+|.|.+|+ ...++ ||||||+|.+.++|.++|+.+||+.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~t-e~~L~~~F~~~G~i~~v~--i~~~~-------~g~afV~F~~~~~A~~Ai~~l~g~~~~g- 99 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVT-PQSLFILFGVYGDVQRVK--ILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG- 99 (229)
T ss_dssp CCCCSEEEEESCCTTTCC-HHHHHHHHHHHTCEEEEE--ECCTT-------SCCEEEEESCHHHHHHHHHHHTTCBCSS-
T ss_pred CCCCCEEEEeCCCcccCC-HHHHHHHHHhCCCeEEEE--EEECC-------CCEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence 45788999999999 765 889999999999999998 33342 8999999999999999999999999863
Q ss_pred eeeceeeeeeecCCCC
Q 015240 270 KVQKQIRCEMVNSSSS 285 (411)
Q Consensus 270 KVEK~ikce~~~~~S~ 285 (411)
+.++|+.+...+.
T Consensus 100 ---~~l~v~~a~~~~~ 112 (229)
T 2adc_A 100 ---KPIRITLSKHQNV 112 (229)
T ss_dssp ---SBCEEECCSCCCC
T ss_pred ---eEEEEEEecCccc
Confidence 6677777765543
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=2.3e-11 Score=101.34 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=65.8
Q ss_pred CccEEEEcCCCC-CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 193 SGIRVRLLNLPK-KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 193 dgvRVrVGNLPk-k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
.+-+|||+|||. ..+ +.+|+.+|..+|.|.+|+ ...++ ||||||+|.+.++|.++|+.+||..|.+
T Consensus 2 ~~~~l~v~nlp~~~~~-~~~l~~~F~~~G~i~~v~--i~~~~-------~g~afV~f~~~~~a~~A~~~l~~~~~~g--- 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT-PQSLFILFGVYGDVQRVK--ILFNK-------KENALVQMADGNQAQLAMSHLNGHKLHG--- 68 (198)
T ss_dssp CCCEEEEECCCSSSCC-HHHHHHHHHTTCCCSEEE--CSTTC-------SSCCEEECTTTHHHHHHHHHHTTCCCSS---
T ss_pred CCcEEEEeCCCcccCC-HHHHHHHHHhcCCEEEEE--EEeCC-------CCEEEEEECCHHHHHHHHHHhCCCeecC---
Confidence 357999999999 765 889999999999999997 33332 8999999999999999999999999863
Q ss_pred eceeeeeeecCCC
Q 015240 272 QKQIRCEMVNSSS 284 (411)
Q Consensus 272 EK~ikce~~~~~S 284 (411)
+.++|+.+...+
T Consensus 69 -~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 -KPIRITLSKHQN 80 (198)
T ss_dssp -CCCEEEECCCCS
T ss_pred -eEEEEEEecCCC
Confidence 667777776554
No 190
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.25 E-value=1.5e-11 Score=100.33 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 192 PSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
..+.-||||||+...+ +.+|+++|..+|.|.++++. . .||||||.|.++++|+++|+.+||..+.+
T Consensus 5 ~~~~wL~VgNL~~~~t-e~~L~~lF~q~G~V~~~~l~--~--------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g--- 70 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID-GPTLRTLCMQHGPLVSFHPY--L--------NQGIALCKYTTREEANKAQMALNNCVLAN--- 70 (89)
T ss_dssp CCCCEEEEECCCTTCC-CHHHHHHHHHHSCEEEEEEE--T--------TTTEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CccceEEEeCCCccCC-HHHHHHHHHhhCCEEEEEEc--C--------CCcEEEEEECCHHHHHHHHHHhcCCEECC---
Confidence 4578999999999865 88999999999999999842 1 39999999999999999999999999874
Q ss_pred eceeeeeee
Q 015240 272 QKQIRCEMV 280 (411)
Q Consensus 272 EK~ikce~~ 280 (411)
+.|+...|
T Consensus 71 -r~I~V~~A 78 (89)
T 2wbr_A 71 -TTIFAESP 78 (89)
T ss_dssp -EEEEEECC
T ss_pred -cEEEEEEC
Confidence 55555555
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=9.1e-11 Score=92.88 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCCCccEEEEcCCCCCCc----------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHH
Q 015240 190 DMPSGIRVRLLNLPKKKN----------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQ 259 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~n----------i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIE 259 (411)
....+-+|+|.||..... +..+|+++|..+|.|.+|.+ .++ .+||||||+|.+.++|.++|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i---~~~-----~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL---FDR-----HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE---ETT-----CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE---ecC-----CCCEEEEEEECCHHHHHHHHH
Confidence 445678899999954432 24699999999999999964 333 369999999999999999999
Q ss_pred HhCCceeccceeeceeeeeeecCCCCCCC
Q 015240 260 LFSRQIIAFGKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 260 k~NGq~~~fgKVEK~ikce~~~~~S~~~~ 288 (411)
.+||+.|. -+.|+|+.+........
T Consensus 83 ~lng~~~~----gr~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 83 TLDGRWFG----GRQITAQAWDGTTDYQS 107 (112)
T ss_dssp HSTTCEET----TEECEEEECCSCCCSSC
T ss_pred HcCCCEEC----CcEEEEEEeCCCCCccc
Confidence 99999987 46788888877655543
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=5.9e-11 Score=95.36 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred CCCccEEEEcCCCCC----CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCcee
Q 015240 191 MPSGIRVRLLNLPKK----KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQII 266 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk----~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~ 266 (411)
..++-.|+|.||.-. ..+..||++.|..+|.|.++++. .++.|+ +..||||||+|.+.++|.++|+.+||+.|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~--~~~~~~-~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIF--EIPGAP-DDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEE--ECSSCC-TTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEe--cCCCCC-CCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 346778999999731 12377999999999999999854 444342 36799999999999999999999999998
Q ss_pred ccceeeceeeeeeec
Q 015240 267 AFGKVQKQIRCEMVN 281 (411)
Q Consensus 267 ~fgKVEK~ikce~~~ 281 (411)
.+ +.|+|+.+.
T Consensus 82 ~G----r~i~v~~a~ 92 (105)
T 2pe8_A 82 GG----RVVKACFYN 92 (105)
T ss_dssp TT----EECEEEECC
T ss_pred CC----cEEEEEEcC
Confidence 63 566777664
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.16 E-value=5.9e-11 Score=95.65 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=57.2
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCC-----------CeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVP-----------GIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vG-----------gvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
+.-+|||+|||.+.+ +.+|+++|..+| .|.+++ ++ .+||||||+|.+.++|.++| .+
T Consensus 3 ~~~~l~V~nLp~~~t-~~~l~~~F~~~g~~~g~~~~~~~~v~~~~--------~~--~~~g~afV~f~~~~~A~~A~-~~ 70 (172)
T 2g4b_A 3 SARRLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQ--------IN--QDKNFAFLEFRSVDETTQAM-AF 70 (172)
T ss_dssp GGGEEEEESCCTTCC-HHHHHHHHHHHHHHTTCCSSSSCSEEEEE--------EE--TTTTEEEEEESSHHHHHHHG-GG
T ss_pred cccEEEEcCCCcccC-HHHHHHHHHHHhhhcccccCCCCceeeeE--------ec--CCCCEEEEEeCCHHHHHHHH-Hh
Confidence 456999999999865 889999999994 444443 32 45999999999999999999 89
Q ss_pred CCceeccceeeceeeeeee
Q 015240 262 SRQIIAFGKVQKQIRCEMV 280 (411)
Q Consensus 262 NGq~~~fgKVEK~ikce~~ 280 (411)
||+.|.+ +.++++.+
T Consensus 71 ~~~~~~g----~~i~v~~~ 85 (172)
T 2g4b_A 71 DGIIFQG----QSLKIRRP 85 (172)
T ss_dssp TTCEETT----EECEEECC
T ss_pred CCcEecC----ceeeecCC
Confidence 9999874 34555543
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=1e-10 Score=96.29 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=58.8
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEee--c-cccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIP--V-VSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkp--a-v~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.+-+|||+|||.+.+ +.+|+++|..+|.|..+.+ . .+.+.+++ .+||||||+|.+.++|.++| .+||+.|.+
T Consensus 3 ~~~~l~V~nLp~~~t-e~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g- 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT-EEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG- 77 (198)
T ss_dssp -CCEEEEESCCTTCC-HHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETT-
T ss_pred ceeEEEEcCCCCCCC-HHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC-
Confidence 456999999999865 8899999999953222110 0 11111232 56999999999999999999 899999874
Q ss_pred eeeceeeeeeecCC
Q 015240 270 KVQKQIRCEMVNSS 283 (411)
Q Consensus 270 KVEK~ikce~~~~~ 283 (411)
+.++|..+...
T Consensus 78 ---~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 ---QSLKIRRPHDY 88 (198)
T ss_dssp ---EEEEEECCCCC
T ss_pred ---ceEEEeCCCCC
Confidence 45566555443
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.15 E-value=1.2e-10 Score=103.24 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=65.6
Q ss_pred CCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 189 EDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
......-+|||+|||...+ ..+|+.+|..+|.|.+|++ . ..||||||+|.+.++|.++|+.+||..|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~i--~--------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDIT-EEDFKRLFERYGEPSEVFI--N--------RDRGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CSSCGGGEEEEESCCTTCC-HHHHHHHTGGGCCCSEEEE--E--------TTTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCEEEEECCCCCCC-HHHHHHHHHhcCCEEEEEE--e--------CCCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 3446778999999999865 8899999999999999984 2 238999999999999999999999999874
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+.++|..+.
T Consensus 86 ----~~l~v~~a~ 94 (261)
T 3sde_A 86 ----RPLRIRFAT 94 (261)
T ss_dssp ----EECEEEECC
T ss_pred ----ceeEeeecc
Confidence 556666654
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.14 E-value=1.7e-10 Score=92.42 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=65.0
Q ss_pred CccEEEEcCC--CCCCc-------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 015240 193 SGIRVRLLNL--PKKKN-------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 193 dgvRVrVGNL--Pkk~n-------i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG 263 (411)
++-.|.|.|+ |.+.. +..||++.|..+|.|.+|++ ..++.|+.+..||||||+|.+.++|.++|+.+||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i--~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI--PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC--CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE--eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4556889998 54422 34689999999999999984 4455454456899999999999999999999999
Q ss_pred ceeccceeeceeeeeeec
Q 015240 264 QIIAFGKVQKQIRCEMVN 281 (411)
Q Consensus 264 q~~~fgKVEK~ikce~~~ 281 (411)
+.|.+ ++|+|+.++
T Consensus 82 ~~f~G----R~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFAN----RVVVTKYCD 95 (105)
T ss_dssp CEETT----EECEEEEEC
T ss_pred CEeCC----CEEEEEEeC
Confidence 99863 567776654
No 197
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.12 E-value=1.3e-10 Score=101.19 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=57.9
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
..-+|||+|||...+ +.+|+++|..+|.|.+|++.... +| .+||||||+|++.++|.++|+.+++ .|.+
T Consensus 108 ~~~~l~V~nLp~~~t-~~~L~~~F~~~G~v~~v~i~~~~---~~--~~kG~aFVeF~~~e~A~~A~~~~~~-~~~G 176 (193)
T 2voo_A 108 KNRSVYIKGFPTDAT-LDDIKEWLEDKGQVLNIQMRRTL---HK--AFKGSIFVVFDSIESAKKFVETPGQ-KYKE 176 (193)
T ss_dssp HHTEEEEECCCTTCC-HHHHHHHHTTSCCEEEEEEEECT---TC--CEEEEEEEEESSHHHHHHHHHCTTC-EETT
T ss_pred ccCEEEecCCCCcCC-HHHHHHHHhcCCCEEEEEEEECC---CC--CcccEEEEEECCHHHHHHHHHhCCC-eECC
Confidence 457899999999865 88999999999999999855432 33 7899999999999999999987654 6654
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.11 E-value=1.3e-10 Score=107.30 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=64.8
Q ss_pred CCccEEEEcCCCCCCc--------hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 015240 192 PSGIRVRLLNLPKKKN--------IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 192 ~dgvRVrVGNLPkk~n--------i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG 263 (411)
...-+|||||||...+ .+.+|+.+|..+|.|.+|++ ..+ ||||||+|.+.++|.++|+.+||
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v--~~~--------kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY--VES--------KNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE--EGG--------GTEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE--ECC--------CCEEEEEeCCHHHHHHHHHHhCC
Confidence 4577999999999753 47899999999999999983 332 89999999999999999999999
Q ss_pred ceecc---c-----eeeceeeeeeecCC
Q 015240 264 QIIAF---G-----KVQKQIRCEMVNSS 283 (411)
Q Consensus 264 q~~~f---g-----KVEK~ikce~~~~~ 283 (411)
+.|.. . .=-+.|.+..++..
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CEEeccccccccccCCCCEEEEEEccCC
Confidence 99820 0 01356777777654
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.11 E-value=8.2e-11 Score=102.83 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=61.3
Q ss_pred cEEEEcCC----CCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecC-----HHH---HHHHHH--H
Q 015240 195 IRVRLLNL----PKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFES-----EDY---ATRFVQ--L 260 (411)
Q Consensus 195 vRVrVGNL----Pkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~s-----eed---A~rfIE--k 260 (411)
..|||||| |..++ +.+|+.+|+.+|.|.+++ .+.|+.|| .+||||||.|.+ .+. |.++|+ .
T Consensus 3 ~kI~VgnL~~~~~~~tt-e~~Lk~~Fs~fGeV~~~~--li~Dp~Tg--~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ-DISIKNYFKKYGEISHFE--AFNDPNSA--LPLHVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp CEEEEEESSSSCCCCCC-HHHHHHHHHTTSCCSEEE--EEECTTTC--CEEEEEEEECC------CCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCCCCC-HHHHHHHHHhcCCeEEEE--EEecCCCC--ceeeEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 57999999 99865 889999999999999998 88999998 999999999996 333 899999 8
Q ss_pred hCCceecc
Q 015240 261 FSRQIIAF 268 (411)
Q Consensus 261 ~NGq~~~f 268 (411)
+||+.|.+
T Consensus 78 lng~~I~G 85 (136)
T 2j8a_A 78 SSGCFIMG 85 (136)
T ss_dssp TTCEEETT
T ss_pred hcCCeecC
Confidence 89999986
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=1.4e-09 Score=89.71 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=65.1
Q ss_pred CccEEEEcCCCCC----CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKK----KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk----~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
++-.|+|.|+--. ..+..||++.|..+|.|.+|++.....-..+.+..||||||+|.+.++|.++|+.+||+.|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5668999998421 136789999999999999998554332111224678999999999999999999999999863
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+.|+|+.++
T Consensus 99 ----R~i~v~~~~ 107 (118)
T 3ue2_A 99 ----RKVVAEVYD 107 (118)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEEcC
Confidence 566776653
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=6.7e-10 Score=107.21 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=57.8
Q ss_pred CCCCccEEEEcCC--CCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 190 DMPSGIRVRLLNL--PKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 190 ~~~dgvRVrVGNL--Pkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
.++++-+|||||| +...+ +.+|+++|..+|.|.+|+.. ++ ||||||+|.+.++|.++|+.+||+.+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~t-e~~L~~~F~~~G~V~~v~~~------~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVS-RNQLLPVLEKCGLVDALLMP------PN----KPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCC-HHHHHHHHHTTSCEEEEECC------TT----CSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCC-HHHHHHHHHhcCCeEEEEEe------CC----CCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 3568889999995 66644 88999999999999998742 13 899999999999999999999999984
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.1e-09 Score=82.87 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=61.9
Q ss_pred ccEEEEcCCCCCC-----ch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceec
Q 015240 194 GIRVRLLNLPKKK-----NI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIA 267 (411)
Q Consensus 194 gvRVrVGNLPkk~-----ni-~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~ 267 (411)
.-||.|.-.++.. ++ +.+|+++|..+|.|..|++. + .+||||||+|.+.++|.++|+.++|..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~-----~~rGfaFVeF~~~~~A~~Ai~~~~~~~-- 78 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----S-----KKPGTAVVEFATVKAAELAVQNEVGLV-- 78 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----S-----SSSSEEEEEESCHHHHHHHHHTCCBCS--
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----c-----CCCCEEEEEECCHHHHHHHHHhcCCCC--
Confidence 4578887776531 12 77999999999999999854 1 469999999999999999999866632
Q ss_pred cceeeceeeeeeecCCCCCCC
Q 015240 268 FGKVQKQIRCEMVNSSSSNSV 288 (411)
Q Consensus 268 fgKVEK~ikce~~~~~S~~~~ 288 (411)
-++|++..+....+...
T Consensus 79 ----g~~l~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 79 ----DNPLKISWLEGQPQDAS 95 (100)
T ss_dssp ----SSBCEEECSSCCCCCCS
T ss_pred ----CCeEEEEEccCCCCCCC
Confidence 46788888776654433
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.82 E-value=8.9e-09 Score=82.17 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=47.4
Q ss_pred HHHHHh-ccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeee
Q 015240 211 DLKSAF-KGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEM 279 (411)
Q Consensus 211 DL~~aF-k~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~ 279 (411)
||++.| ..+|.|.+|++. .++ +| ..||||||+|.+.++|.++|+.+||+.|.+ +.|+|+.
T Consensus 42 dl~~~f~~~~G~V~~v~i~--~~~-~~--~~~G~~fV~f~~~~~A~~A~~~lng~~~~G----r~i~v~~ 102 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVC--DNL-GD--HLVGNVYVKFRREEDAEKAVIDLNNRWFNG----QPIHAEL 102 (104)
T ss_dssp HHHHHHHHHTCCEEEEEEC--CSS-SS--SSEEEEEEEESCHHHHHHHHHHHTTCEETT----EECCEEE
T ss_pred HHHHHhhccCCceEEEEEE--eCC-CC--CccEEEEEEECCHHHHHHHHHHHCCCEECC----EEEEEEE
Confidence 444555 999999999854 343 33 789999999999999999999999999874 4455554
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.68 E-value=3.4e-08 Score=81.16 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=58.6
Q ss_pred ccEEEEcCCCCCC---------chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 015240 194 GIRVRLLNLPKKK---------NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 194 gvRVrVGNLPkk~---------ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq 264 (411)
+-.|.|.|+=-.. .|..||++.|..+|.|.+|++ ..+ + .||||||+|.+.++|.++|+.+||+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i--~~~--~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV--DKN--S----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE--CTT--C----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE--ecC--C----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3457778873321 235689999999999999984 233 3 2999999999999999999999999
Q ss_pred eeccceeeceeeeeeec
Q 015240 265 IIAFGKVQKQIRCEMVN 281 (411)
Q Consensus 265 ~~~fgKVEK~ikce~~~ 281 (411)
.|.+ +.|+|+.+.
T Consensus 79 ~f~G----R~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAG----KMITAAYVP 91 (114)
T ss_dssp EETT----EECEEEEEC
T ss_pred EECC----EEEEEEEEc
Confidence 9874 466676653
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.6e-06 Score=73.45 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=62.0
Q ss_pred CCCCCCCccEEEEcCCCCC-CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecC-HHHHHHHHHHhC--
Q 015240 187 EPEDMPSGIRVRLLNLPKK-KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFES-EDYATRFVQLFS-- 262 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk-~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~s-eedA~rfIEk~N-- 262 (411)
+.-.-+.|.-|||+|||.. ++ +++|+++|+.+|.|..|. ...++ -+|||.|.+ +..|.++|+++|
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~s-redLke~F~~~G~V~~Vd--~~~g~--------~tgfVrf~~~~~~A~~av~~ln~~ 79 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTC-REDLHILFSNHGEIKWID--FVRGA--------KEGIILFKEKAKEALGKAKDANNG 79 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCC-HHHHHHHTCSSCCEEEEE--CCTTC--------SEEEEEESSCHHHHHHHHHHTTTS
T ss_pred CcccccCCeEEEEecCCCCcCC-HHHHHHHHHhcCCEEEEE--EecCC--------CEEEEEECCChHHHHHHHHHhhcC
Confidence 4556789999999999998 65 889999999999999997 44443 259999999 899999999995
Q ss_pred Cceeccceeeceeeeeee
Q 015240 263 RQIIAFGKVQKQIRCEMV 280 (411)
Q Consensus 263 Gq~~~fgKVEK~ikce~~ 280 (411)
|..|.. ..++++++
T Consensus 80 ~~~i~g----~~~~~evL 93 (121)
T 1owx_A 80 NLQLRN----KEVTWEVL 93 (121)
T ss_dssp CBCTTS----SSEEEEEC
T ss_pred CcEEeC----cEEEEEEC
Confidence 444442 33444444
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.35 E-value=1e-06 Score=76.04 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=55.5
Q ss_pred hHHHHHHHhccCCCeeEEeeccc--cCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceeccceeeceeeeeeec
Q 015240 208 IHRDLKSAFKGVPGIINIIPVVS--GNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKVQKQIRCEMVN 281 (411)
Q Consensus 208 i~kDL~~aFk~vGgvisIkpav~--~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKVEK~ikce~~~ 281 (411)
++.||.+.|..+|.|.++++... .++.|+ .-|||+||.|.+.++|.++|+.+||+.|.+ ++|.|+..+
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~--~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDA--EIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTC--CEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCc--CceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEcC
Confidence 57799999999999999985432 334444 679999999999999999999999999773 567776654
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=3.4e-06 Score=69.27 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=51.9
Q ss_pred CCCccEEEEcCCC---CC----CchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCC
Q 015240 191 MPSGIRVRLLNLP---KK----KNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSR 263 (411)
Q Consensus 191 ~~dgvRVrVGNLP---kk----~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NG 263 (411)
.|++-+|.|-.+| +. -++.-+|.+.|..+|.|+.++ .+. +++||+|.+.+.|.++|+ +||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr--~~~----------d~~fVtF~d~~sAlaAi~-mnG 70 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIR--FVE----------DKMWVTFLEGSSALNVLS-LNG 70 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEE--ECS----------SSEEEEESSHHHHHHGGG-GTT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEE--Eec----------CCEEEEECChHHHHHHHh-cCC
Confidence 4677788887776 12 122368999999999999998 333 348999999999999999 999
Q ss_pred ceecc
Q 015240 264 QIIAF 268 (411)
Q Consensus 264 q~~~f 268 (411)
+.|.+
T Consensus 71 ~~v~G 75 (91)
T 2dnr_A 71 KELLN 75 (91)
T ss_dssp CEETT
T ss_pred eEeCC
Confidence 99886
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=2.7e-05 Score=64.59 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=54.9
Q ss_pred CCCCCccEEEEcCCCC--------CCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 189 EDMPSGIRVRLLNLPK--------KKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 189 ~~~~dgvRVrVGNLPk--------k~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
.-.|+.-||.|-.++- .-++.-+|.+.|..+|.|+.+| .+.++ +||||.+.+.|.++|+
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr--~v~d~----------~fVtF~d~~sAl~AI~- 76 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVR--INQGQ----------MLVTFADSHSALSVLD- 76 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEE--EETTE----------EEEECSCSHHHHHHHH-
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEE--EecCc----------EEEEEcChHHHHHHHh-
Confidence 3457888999998872 2122357999999999999998 55552 9999999999999999
Q ss_pred hCCceecc
Q 015240 261 FSRQIIAF 268 (411)
Q Consensus 261 ~NGq~~~f 268 (411)
+||+.|.+
T Consensus 77 ldG~~v~G 84 (95)
T 1ufw_A 77 VDGMKVKG 84 (95)
T ss_dssp GGGSEETT
T ss_pred cCCeeeCC
Confidence 99999986
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.68 E-value=4.7e-06 Score=66.06 Aligned_cols=67 Identities=7% Similarity=0.116 Sum_probs=35.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKK 206 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ 206 (411)
+++||||++.|.+.+.+++++++|.+.. .++.+.+..+.+++... ...........+|||+|||...
T Consensus 42 ~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~--------~~~~~~~~~~~~lyv~Nl~~~~ 109 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE--------AELGARAKEFTNVYIKNFGPGS 109 (115)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--------------------------------
T ss_pred CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc--------cccccccCCCCceEeCCCCCCc
Confidence 4679999999999999999999999977 88888887655433211 1111223344579999999974
No 210
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.04 E-value=0.00024 Score=54.06 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=48.8
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLP 203 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLP 203 (411)
++|||++.|.+.+.+++++++|.+.. .++.+.+..++..+... +....+..+...-+||||||+
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~------~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS------RFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS------CCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc------cCCCCCccccCCCceecCCCC
Confidence 79999999999999999999999877 77777777666554321 112233455667889999997
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.97 E-value=0.028 Score=45.69 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=55.2
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.|-|.+||.... +.++.+.+...+.+.-++= +-++. +.++..-.=||++|++.+++..|.+.|+|+.|.+
T Consensus 3 KvVIRrLPP~Lt-eeeF~~~l~~~~~~d~~~f-v~G~~-s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 3 KVVIRRLPPTLT-KEQLQEHLQPMPEHDYFEF-FSNDT-SLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp EEEEEEECTTCC-HHHHHHHHCSCCCEEEEEE-EESCC-SSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred EEEEeCCCCCCC-HHHHHHHhcCcccceEEEE-eCCcc-CCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 678999999854 7799999999988644431 23333 2235666889999999999999999999999887
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.47 E-value=0.0092 Score=48.53 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=26.6
Q ss_pred cccceEEEeecCHHHHHHHHHHhCCceeccc
Q 015240 239 ICKGFAFVDFESEDYATRFVQLFSRQIIAFG 269 (411)
Q Consensus 239 ~CKGFAFVtf~seedA~rfIEk~NGq~~~fg 269 (411)
.++|||||.|.+.+.|.++++.++|.....|
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~ 41 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG 41 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCC
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCC
Confidence 4799999999999999999999998654433
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.68 E-value=0.12 Score=43.54 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred CCCCccEEEEcCCCCCCchHHHHHHHhcc-----CCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH----
Q 015240 190 DMPSGIRVRLLNLPKKKNIHRDLKSAFKG-----VPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL---- 260 (411)
Q Consensus 190 ~~~dgvRVrVGNLPkk~ni~kDL~~aFk~-----vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk---- 260 (411)
-+.-+.+|+|.|||...+ +.-|+..|.. =|+|.++. . . | +=|+|+|.+.+.|++++++
T Consensus 4 ~~~~~~~I~V~~lPp~~~-~e~L~LYFEn~rrsGGG~V~~v~--~--~-----~---~~AvItF~d~~va~rVL~k~~H~ 70 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVP-DELLTLYFENRRRSGGGPVLSWQ--R--L-----G---CGGVLTFREPADAERVLAQADHE 70 (104)
T ss_dssp SCCCCCEEEEESCCTTSC-HHHHHHHHHCTTTTCCCCEEEEE--E--E-----T---TEEEEEESSHHHHHHHHTCSCCB
T ss_pred CccCccEEEEECCCCCCC-hhHheEEEeCCCcCCCceeeEEE--E--c-----C---CcEEEEEcChHHHHHHhcCCcce
Confidence 356789999999999854 4457777843 34555554 1 1 1 5689999999999999998
Q ss_pred hCCceec
Q 015240 261 FSRQIIA 267 (411)
Q Consensus 261 ~NGq~~~ 267 (411)
|+|..+.
T Consensus 71 L~~~~Ls 77 (104)
T 2dhx_A 71 LHGAQLS 77 (104)
T ss_dssp SSSSBCE
T ss_pred ecCeEEE
Confidence 7776654
No 214
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=94.47 E-value=0.0046 Score=46.45 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK 175 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~ 175 (411)
.++||||++.|.+.+.++++++.|.+.. .|+.+.+..+.+.|.+
T Consensus 42 g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 42 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 3789999999999999999999999977 8888888876665543
No 215
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=94.07 E-value=0.014 Score=45.90 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=34.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-----Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-----EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-----~araaNld~~~~ 171 (411)
.++||||++.|.+.+.++++|+.|.+.. +||.+.++++++
T Consensus 50 g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 50 QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 4899999999999999999999999852 678888876653
No 216
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=93.94 E-value=0.0052 Score=47.66 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=47.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCccEEEEcCCCCCCchHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPKKDEPKKKEPEDMPSGIRVRLLNLPKKKNIHR 210 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~k~~~akk~~~~~~dgvRVrVGNLPkk~ni~k 210 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.++.+.... .|++.... .+
T Consensus 44 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~------------------------~~~~~~~~-~~ 98 (115)
T 3lqv_A 44 PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF------------------------QKMDTKKK-EE 98 (115)
T ss_dssp TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT------------------------TTSCHHHH-HH
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh------------------------hhhhHhHh-HH
Confidence 3679999999999999999999998866 6666666644332211 45666432 66
Q ss_pred HHHHHhccCCC
Q 015240 211 DLKSAFKGVPG 221 (411)
Q Consensus 211 DL~~aFk~vGg 221 (411)
+|+.+|+.+|-
T Consensus 99 ~l~~~~~~~g~ 109 (115)
T 3lqv_A 99 QLKLLKEKYGI 109 (115)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCC
Confidence 89999988875
No 217
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.64 E-value=0.015 Score=45.40 Aligned_cols=42 Identities=5% Similarity=-0.050 Sum_probs=37.8
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
++||||++.|.+.+.+++++++|.+.. .++.+.+.+++++|.
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 688999999999999999999999987 889999988877764
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.60 E-value=0.17 Score=42.02 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=56.1
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 193 SGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 193 dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
-+..|-|.+||...+ +.++.+.+....++-... =+-++...+ +.+=.-||++|++.++...|.+.++|+.|.+
T Consensus 8 ~~~KvVIRrLPP~Lt-ee~F~~~l~~~~~~d~~~-fv~G~~s~~-~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLT-KEQLEEQLRPLPAHDYFE-FFAADLSLY-PHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSC-HHHHTTTTSCCSSEEECC-CCCCCSSSC-CSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCC-HHHHHHHhCCcCccceEE-EeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356789999999865 778999998888863332 123333232 5556779999999999999999999999887
No 219
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=93.56 E-value=0.013 Score=44.63 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=35.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhh-H-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQS-R-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~s-r-~araaNld~~~~~P 173 (411)
.++||||++.|.+.+.++++|+.|... . .+|.+.++++.++|
T Consensus 41 ~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 41 GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 379999999999999999999988643 3 78889988776544
No 220
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=93.16 E-value=0.012 Score=42.97 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=34.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.+|
T Consensus 45 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~kp 87 (87)
T 3bs9_A 45 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 87 (87)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC---
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCCC
Confidence 3689999999999999999999999876 77888777776655
No 221
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.15 E-value=0.04 Score=41.64 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 899999999999999999999999877 778888877665544
No 222
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.76 E-value=0.03 Score=42.10 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=36.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus 47 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 47 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp CCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred CCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 4789999999999999999999999877 778888887666554
No 223
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=92.73 E-value=0.033 Score=42.15 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=34.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.++||||++.|.+.+.++++|+ |.+.. .++.+.+..+++++
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 3899999999999999999998 98876 77777777665443
No 224
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=92.41 E-value=0.043 Score=42.44 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=39.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPSPK 179 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n~~ 179 (411)
.+++|||++.|.+.+.++++|++|.+.. .++.+.+.+++..+..+.+.
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~ 102 (115)
T 2dgo_A 54 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 102 (115)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCSCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCCccc
Confidence 3679999999999999999999999877 78888888887766644433
No 225
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.33 E-value=0.021 Score=44.44 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=34.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.++||||++.|.+.+.+++++++|.+.. .++.+.+++++
T Consensus 58 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4789999999999999999999999877 88888887654
No 226
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=92.31 E-value=0.026 Score=45.79 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=35.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
++||||++.|.+.+.++++++.|.+.+ .+|.+.+..++..|.
T Consensus 65 ~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 65 DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPPP 107 (111)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC---
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 689999999999999999999999987 889998887765543
No 227
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=92.30 E-value=0.028 Score=45.38 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=37.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.++++...
T Consensus 89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 3899999999999999999999999977 888888887766443
No 228
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.22 E-value=0.042 Score=42.88 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=35.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++
T Consensus 67 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 108 (109)
T 2err_A 67 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 108 (109)
T ss_dssp BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCSC
T ss_pred CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCc
Confidence 689999999999999999999999876 77888777766554
No 229
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=92.21 E-value=0.024 Score=43.12 Aligned_cols=43 Identities=5% Similarity=-0.088 Sum_probs=36.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.++.++|.
T Consensus 62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 4679999999999999999999998876 778888887776654
No 230
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.16 E-value=0.052 Score=41.00 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=36.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+.++++.+.
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 51 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 4789999999999999999999999877 788888876655443
No 231
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=91.87 E-value=0.026 Score=40.86 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=34.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+..++.+
T Consensus 40 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 40 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 4779999999999999999999998877 7777777655543
No 232
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=91.86 E-value=0.025 Score=45.00 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=34.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.++||||++.|.+.+.+++++++|.+.. .++.+.++++.
T Consensus 45 g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 45 RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5899999999999999999999999977 78888777553
No 233
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.85 E-value=0.064 Score=40.48 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=36.4
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus 52 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 52 RSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 689999999999999999999999877 788888887766554
No 234
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=91.79 E-value=0.03 Score=44.40 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=31.5
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK 168 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~ 168 (411)
++||||++.|.+.+.+.+++++|.+.. .||.+.+++
T Consensus 66 ~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 66 HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence 689999999999999999999999977 777766554
No 235
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.73 E-value=0.063 Score=40.73 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=36.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 53 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 579999999999999999999999877 888888887776655
No 236
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.70 E-value=0.056 Score=41.66 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=36.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.++++|++|.+.. .++.+.+.+++.++.
T Consensus 62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 3789999999999999999999999877 778888876665444
No 237
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=91.69 E-value=0.045 Score=41.19 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=36.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus 41 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 41 GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 3779999999999999999999999877 778888877666543
No 238
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.66 E-value=0.066 Score=39.80 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=36.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 4789999999999999999999999876 778888776665444
No 239
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=91.64 E-value=0.037 Score=44.12 Aligned_cols=38 Identities=3% Similarity=-0.197 Sum_probs=33.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
++||||++.|.+.+.+.+++++|.+.. .+|.+.+.++.
T Consensus 54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 54 DEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 679999999999999999999999988 88888776553
No 240
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=91.50 E-value=0.051 Score=40.50 Aligned_cols=41 Identities=5% Similarity=0.000 Sum_probs=34.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
++||||++.|.+.+.+++++++|.+.. .++.+.++.+..+.
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 889999999999999999999999877 77777777654433
No 241
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=91.29 E-value=0.11 Score=41.59 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=34.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhh----H-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQS----R-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~s----r-~araaNld~~~~ 171 (411)
.++||||++.|.+. .+.+++++|.+. . .+|.+.+++++.
T Consensus 64 g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 64 QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 47999999999999 999999999997 6 889999887654
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=91.29 E-value=0.053 Score=41.44 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=32.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
.+++|||++.|.+.+.+++++ +|.+.. .++.+.+..++.
T Consensus 58 g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 58 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred CccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 478999999999999999999 898876 777777665544
No 243
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.23 E-value=0.059 Score=40.73 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=34.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+..++.+
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4899999999999999999999999877 7777777765543
No 244
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.16 E-value=0.056 Score=40.23 Aligned_cols=42 Identities=5% Similarity=0.030 Sum_probs=35.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.++...+
T Consensus 45 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 45 GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 4789999999999999999999998876 77777777665544
No 245
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.10 E-value=0.07 Score=40.48 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=35.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+
T Consensus 52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 4789999999999999999999999877 77888877666543
No 246
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=91.08 E-value=0.052 Score=40.12 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=35.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++....
T Consensus 45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 3689999999999999999999999876 777777776555433
No 247
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=90.91 E-value=0.063 Score=41.19 Aligned_cols=43 Identities=5% Similarity=-0.084 Sum_probs=36.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.++.+++.
T Consensus 65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 4789999999999999999999999877 778888877766553
No 248
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.81 E-value=0.5 Score=39.77 Aligned_cols=62 Identities=24% Similarity=0.263 Sum_probs=47.8
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
+.+..+.--+|++-+.|++.. ..||..+|..+|+ +.|+ =+.| | -|||.|.+.+.|..++..+
T Consensus 8 g~d~~p~r~HVf~l~FP~ewK-t~DI~~lFs~fgg-v~I~--WidD--T-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 8 GPDLQPKRDHVLHVTFPKEWK-TSDLYQLFSAFGN-IQIS--WIDD--T-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSCCCCCCCSEEEEECCTTCC-HHHHHHHHTTTCS-CCCE--EEET--T-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEeCChhhh-hHHHHHHhhccCC-EEEE--EEcC--C-------eEEEEecCHHHHHHHHHhc
Confidence 445566556666669999854 8899999999995 5665 4444 5 5999999999999988854
No 249
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.77 E-value=0.054 Score=40.95 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=36.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus 50 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 50 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp SCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 3789999999999999999999999877 788888887665543
No 250
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=90.75 E-value=0.25 Score=37.61 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=37.1
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP 176 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~ 176 (411)
-+||||++.|.+.+.++++++.|.+.. .++.+.+.+++..+...
T Consensus 43 ~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 43 KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp ECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred EECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 468999999999999999999999877 78888888776655533
No 251
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=90.13 E-value=0.046 Score=42.60 Aligned_cols=43 Identities=7% Similarity=-0.011 Sum_probs=37.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++.
T Consensus 54 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 54 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 3789999999999999999999999877 888888887766554
No 252
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.71 E-value=0.1 Score=39.55 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=35.0
Q ss_pred cCCCCccccceecchHHHHHHHHH-HhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEI-QQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM-~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+...++++++.| .+.. .++.+.+.+++.++.
T Consensus 55 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 55 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred CCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 478999999999999999999999 5655 777777776665443
No 253
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.67 E-value=0.074 Score=40.35 Aligned_cols=40 Identities=0% Similarity=-0.157 Sum_probs=35.5
Q ss_pred CCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 135 rGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 9999999999999999999999977 888888887766554
No 254
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.67 E-value=0.03 Score=41.40 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=32.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+ +.+++++|.+.. .++.+.+..+...+.
T Consensus 40 ~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 40 KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 478999999999999 999999998877 778888877665444
No 255
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.66 E-value=0.071 Score=41.08 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=36.7
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
..+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++..+.
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 45899999999999999999999998866 777787776665443
No 256
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.64 E-value=0.092 Score=38.37 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=28.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhh
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMAN 165 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaN 165 (411)
.+++|||++.|.+.+.+++++++|.+.. .+|.+-
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 44 NKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 4789999999999999999999998866 554443
No 257
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.61 E-value=0.095 Score=39.45 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=33.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.++||||++.|.+...++++|+ |.+.. .++.+.+.++++.+.
T Consensus 49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 4689999999999999999998 87765 677777776554433
No 258
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=90.56 E-value=0.082 Score=41.90 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=36.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+..++..+.
T Consensus 45 g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 45 SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 4789999999999999999999998877 788888887765544
No 259
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.48 E-value=0.084 Score=40.28 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCCCccccceecchHHHHHHHHHH------hhH-HhhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQ------QSR-EAQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~------~sr-~araaNld~~~~~P 173 (411)
+++|||++.|.+.+.++++|+.|. +.. .++.+.+.++.+++
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 55 HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp CBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 789999999999999999999997 544 67777777655443
No 260
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=90.46 E-value=0.065 Score=43.80 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=34.0
Q ss_pred hcCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 131 ENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 131 ~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
++.+||||+++|.+.+.+.+++++|.+.+ .||.+.+.++
T Consensus 51 ~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 51 KNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp TTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred cCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 34579999999999999999999999988 8888876654
No 261
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.42 E-value=0.062 Score=44.36 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=36.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.++||||++.|.+.+.+++++++|.+.. .++.+.+++++.++
T Consensus 69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 3789999999999999999999999977 88888888766543
No 262
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.22 E-value=0.072 Score=40.40 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=34.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++..+
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 54 GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred CcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 4789999999999999999999998866 77777777655443
No 263
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.21 E-value=0.061 Score=40.62 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=35.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.++++|++|.+.. .++.+.+.++++++
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 3789999999999999999999999977 77888877665543
No 264
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=90.12 E-value=0.043 Score=42.23 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=33.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hh-hhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EA-QMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~a-raaNld~~~ 170 (411)
.++||||++.|.+...+++++++|.+.. .+ +.+.+.++.
T Consensus 51 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 51 GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMK 91 (100)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECc
Confidence 4789999999999999999999999877 66 777766554
No 265
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.04 E-value=0.63 Score=39.11 Aligned_cols=73 Identities=8% Similarity=-0.025 Sum_probs=60.1
Q ss_pred ccEEEEcCCCCCCch----H-HHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 194 GIRVRLLNLPKKKNI----H-RDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 194 gvRVrVGNLPkk~ni----~-kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
-.+|.|+||+.+. + . ..++++|..++.++++-+=.+-.| .-|+|.+.++|.++=-++.|..|++
T Consensus 5 pntLiitnl~~~v-F~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRR----------irv~F~~~~~A~~AR~~Lh~~~f~g 73 (104)
T 1wey_A 5 SSGLIACVANDDV-FSESETRAKFESLFRTYDKDTTFQYFKSFKR----------VRINFSNPLSAADARLRLHKTEFLG 73 (104)
T ss_dssp CCEEEEECCCGGG-GSTTTHHHHHHHHHHTTCSSCEEEEETTTTE----------EEEECSSTTHHHHHHHTSTTSEETT
T ss_pred CceEEEecCCHHH-cCCHHHHHHHHHHHHhhCcCcceeecCcceE----------EEEEeCChHHHHHHHHHhccceecC
Confidence 3579999998863 2 2 367999999999999987777665 4799999999999999999999873
Q ss_pred ceeeceeeeeeec
Q 015240 269 GKVQKQIRCEMVN 281 (411)
Q Consensus 269 gKVEK~ikce~~~ 281 (411)
+.++|-.+.
T Consensus 74 ----~~~r~YFgq 82 (104)
T 1wey_A 74 ----KEMKLYFAQ 82 (104)
T ss_dssp ----EECEEECCC
T ss_pred ----ceeEEEecC
Confidence 368888877
No 266
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.87 E-value=0.11 Score=39.37 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=34.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+
T Consensus 53 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 53 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 578999999999999999999999877 77888877665533
No 267
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.86 E-value=0.056 Score=41.00 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=36.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 54 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 3789999999999999999999999877 778888877665443
No 268
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=89.78 E-value=0.071 Score=41.32 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=36.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.++||||++.|.+.+.++++|++|.+.. .++.+.+.+++.++.
T Consensus 64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 3688999999999999999999999877 788888876665443
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.77 E-value=0.087 Score=39.24 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCCCccccceecchHHHHHHHHHHh-hH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQ-SR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~-sr-~araaNld~~~~~P~ 174 (411)
+++|||++.|.+.+.+++++++|.+ .. .++.+.+.+++.++.
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 4699999999999999999999998 66 888888887665443
No 270
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.63 E-value=0.049 Score=40.83 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=35.0
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+..++.++.
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 678999999999999999999998876 777777776655443
No 271
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=89.60 E-value=0.11 Score=40.83 Aligned_cols=44 Identities=5% Similarity=-0.090 Sum_probs=38.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK 175 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~ 175 (411)
.+++|||++.|.+...++++++.|.+.. .++.+.+.++.+.+.+
T Consensus 61 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 61 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp SSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 4779999999999999999999999977 8889999988776654
No 272
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.43 E-value=0.061 Score=40.60 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=34.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.++++.+
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 4789999999999999999999998866 77777777655443
No 273
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.28 E-value=0.1 Score=39.75 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=34.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.++++| +|.+.. .++.+.+.+++..+.
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 578999999999999999999 898876 778888876655443
No 274
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.22 E-value=0.037 Score=41.84 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=34.9
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
++||||++.|.+...+++++++|.+.. .++.+.+.+++..+
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 679999999999999999999999877 77788777665543
No 275
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=89.22 E-value=0.083 Score=43.17 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=36.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.++||||++.|.+.+.++++|++|.+.. .++.+.+.+++..+.
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 3799999999999999999999998877 778888877665443
No 276
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=89.19 E-value=0.14 Score=40.32 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=36.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.++...+.
T Consensus 73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 3689999999999999999999999877 788888887766444
No 277
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.88 Score=39.32 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=58.4
Q ss_pred ccEEEEcCCCCCCchHHHHHHHhccC-----CCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 194 GIRVRLLNLPKKKNIHRDLKSAFKGV-----PGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 194 gvRVrVGNLPkk~ni~kDL~~aFk~v-----GgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.-+|-|=|||-+.| ..-+++++... |.++.|. ...+ -|=|+|-|.+...|.++-=.+||.+|.
T Consensus 21 ~rtiaL~~ipDtvn-darIr~lve~~~~i~~g~i~KI~--L~pD--------H~GAivef~d~~~AgKasLaL~G~ef~- 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVS-PSLICQFLQEEIHINEKDIRKIL--LVSD--------FNGAIIIFRDSKFAAKMLMILNGSQFQ- 88 (117)
T ss_dssp TSCEEEECCCTTCC-HHHHHHHHHHHTCCCTTTCSEEE--EETT--------TTEEEEECSCHHHHHHHHHHHSSEEET-
T ss_pred CcEEEEecCCCCCC-HHHHHHHHhhhhccCccceeEEE--EecC--------CCceEEEEccchhhHHHHhhcCCeeec-
Confidence 34677889999977 66688888888 9999997 4444 466999999999999999999999988
Q ss_pred ceeeceeeeeee
Q 015240 269 GKVQKQIRCEMV 280 (411)
Q Consensus 269 gKVEK~ikce~~ 280 (411)
| +.|+|.-+
T Consensus 89 g---r~Lr~gTv 97 (117)
T 2l9w_A 89 G---KVIRSGTI 97 (117)
T ss_dssp T---EEEEEECH
T ss_pred C---eEEEecCH
Confidence 3 56777654
No 278
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=89.11 E-value=0.17 Score=38.43 Aligned_cols=40 Identities=5% Similarity=0.049 Sum_probs=32.3
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH----Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR----EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr----~araaNld~~~~ 171 (411)
.++||||++.|.+.+.++++++.|.+.. .++.+.+.++..
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 52 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 4789999999999999999999998855 456666665443
No 279
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=89.02 E-value=0.12 Score=41.96 Aligned_cols=40 Identities=8% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
+++|||++.|.+.+.++++|++|.+.. .++.+.+.++..+
T Consensus 86 ~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 86 RSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 789999999999999999999998866 7777777665543
No 280
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.01 E-value=0.096 Score=41.62 Aligned_cols=37 Identities=8% Similarity=-0.117 Sum_probs=32.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
+++|||++.|.+.+.+.+++++|.+.. .+|.+.+.+.
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC 94 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence 579999999999999999999999987 7777776554
No 281
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.00 E-value=0.15 Score=39.19 Aligned_cols=40 Identities=5% Similarity=-0.090 Sum_probs=34.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++..
T Consensus 59 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 59 GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 589999999999999999999999876 7777777765543
No 282
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=88.93 E-value=0.069 Score=39.69 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=32.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4679999999999999999999998866 66666666544
No 283
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=88.86 E-value=0.052 Score=40.55 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.++
T Consensus 50 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4789999999999999999999999866 77777777655443
No 284
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.86 E-value=0.037 Score=41.11 Aligned_cols=41 Identities=5% Similarity=0.024 Sum_probs=34.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.++++|+ |.+.. .+|.+.+..++.+|
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 47 GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 3789999999999999999999 88876 78888887766554
No 285
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.85 E-value=0.092 Score=39.80 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=35.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.+++..+
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 52 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 3789999999999999999999999877 77778777665543
No 286
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=88.74 E-value=0.083 Score=40.05 Aligned_cols=43 Identities=7% Similarity=0.058 Sum_probs=34.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hh---hhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EA---QMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~a---raaNld~~~~~P~ 174 (411)
.+++|||++.|.+...+++++++|.+.. .+ +.+.+.++...+.
T Consensus 53 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 53 GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 3679999999999999999999999876 55 7777776665443
No 287
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=88.69 E-value=0.12 Score=41.74 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=36.4
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
++||||++.|.+.+.+++++++|.+.. .++.+.+..++..+.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 899999999999999999999999877 778888887766544
No 288
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=88.61 E-value=0.13 Score=38.92 Aligned_cols=38 Identities=5% Similarity=-0.125 Sum_probs=31.8
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
+++|||++.|.+.+.++++++.|.+.. .++.+.+..++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 789999999999999999999998866 66666666544
No 289
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=88.60 E-value=0.064 Score=39.84 Aligned_cols=38 Identities=5% Similarity=0.047 Sum_probs=32.4
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 789999999999999999999998876 77777666544
No 290
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.54 E-value=0.06 Score=40.35 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=33.5
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
+++|||++.|.+.+.+++++++|.+.. .++.+.+.++..
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 689999999999999999999999866 777777776553
No 291
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.34 E-value=0.15 Score=38.41 Aligned_cols=41 Identities=5% Similarity=-0.007 Sum_probs=35.0
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+||||++.|.+...+++++++|.+.. .++.+.+.++++++
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 469999999999999999999999977 78888887666544
No 292
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=88.20 E-value=0.11 Score=37.80 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
++|||++.|.+.+.+++++++|.+.. .++.+.+..+.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 89999999999999999999999877 77777766553
No 293
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=88.15 E-value=0.087 Score=38.23 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=30.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK 168 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~ 168 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+..
T Consensus 46 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 46 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4789999999999999999999998866 666555543
No 294
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.15 E-value=0.1 Score=39.53 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=33.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH--HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR--EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr--~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.++++|++|.+.. .++.+.+.++..++
T Consensus 48 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 48 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 3689999999999999999999998754 66666666554433
No 295
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.05 E-value=0.061 Score=40.94 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=34.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.++++| +|.+.. .++.+.+.+++..+.
T Consensus 53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 378999999999999999999 888876 788888877665443
No 296
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.93 E-value=0.098 Score=40.97 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=34.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
+.+||||++.|.+...+++++++|.+.. .+|.+.+.++..
T Consensus 61 ~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 61 RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred CCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 3689999999999999999999999877 788888876544
No 297
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.88 E-value=0.15 Score=38.83 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCCCccccceecchHHHHHHHHHH--hhH-HhhhhhhcccccCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQ--QSR-EAQMANINKLENELLK 175 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~--~sr-~araaNld~~~~~P~~ 175 (411)
++||||++.|.+.+.++++++.|. +.. .++.+.++++++++.+
T Consensus 50 ~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 50 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp TTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred CcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 799999999999999999999995 334 7888888887766553
No 298
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.87 E-value=0.1 Score=38.63 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=30.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK 168 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~ 168 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+.+
T Consensus 55 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 55 RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4789999999999999999999998765 555555543
No 299
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=87.82 E-value=0.089 Score=39.21 Aligned_cols=42 Identities=17% Similarity=0.034 Sum_probs=34.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.++++.+
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 48 LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 3789999999999999999999999876 77777777655543
No 300
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=87.73 E-value=0.091 Score=41.10 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=34.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~ 174 (411)
.++||||++.|.+.+.++++++.|+..-.++.+.+..+..++.
T Consensus 64 g~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 64 KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp CCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCC
Confidence 4789999999999999999999886333778888777665554
No 301
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=87.71 E-value=0.14 Score=38.68 Aligned_cols=41 Identities=7% Similarity=-0.051 Sum_probs=35.7
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
+||||++.|.+...+++++++|.+.. .++.+.+.++++++.
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 48999999999999999999999877 788888888776554
No 302
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=87.70 E-value=0.077 Score=40.08 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=30.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK 168 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~ 168 (411)
.+++|||++.|.+.+.++++++.|.+.. .++.+.+.+
T Consensus 60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 97 (99)
T 2la6_A 60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF 97 (99)
T ss_dssp CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEe
Confidence 3789999999999999999999998866 555555443
No 303
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.67 E-value=0.19 Score=38.67 Aligned_cols=43 Identities=5% Similarity=0.020 Sum_probs=36.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK 175 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~ 175 (411)
+.+|||++.|.+.+.++++++.|.+.. .++.+.+.+++.+|..
T Consensus 59 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 59 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 349999999999999999999999877 7888888877776653
No 304
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=87.43 E-value=0.082 Score=41.43 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=32.8
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
+++|||++.|.+.+.++++++.|.+.. .++.+.+.+++.
T Consensus 66 ~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 66 RSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 789999999999999999999998876 677776665543
No 305
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.31 E-value=0.089 Score=38.94 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=32.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.+++|||++.|.+...++++++.|.+.. .++.+.+.+++
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 54 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 3789999999999999999999998866 66666665544
No 306
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.04 E-value=0.26 Score=38.75 Aligned_cols=45 Identities=4% Similarity=-0.077 Sum_probs=39.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKPS 177 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~n 177 (411)
++||||++.|.+...+++++++|.+.. .++.+.+.++..+....+
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 89 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA 89 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTTCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCccCCC
Confidence 689999999999999999999999977 889999988887665443
No 307
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.94 E-value=0.35 Score=36.28 Aligned_cols=41 Identities=5% Similarity=-0.044 Sum_probs=34.1
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-H--hhhhhhcccccCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-E--AQMANINKLENEL 173 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~--araaNld~~~~~P 173 (411)
+.|||+++.|.+.+.++++++.|.+.. . ++.+.+.+++++|
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 51 KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 458999999999999999999998866 5 6777777766554
No 308
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.93 E-value=0.076 Score=39.87 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=31.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhh----hhhccccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQM----ANINKLEN 171 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~ara----aNld~~~~ 171 (411)
+++|||++.|.+.+.++++++.|.+.. .++. +.+++++.
T Consensus 50 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 50 IPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp CEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred CcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 688999999999999999999998866 6666 55555443
No 309
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=86.08 E-value=0.2 Score=38.32 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=32.6
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
+||||++.|.+.+.+++++++|.+.. .++.+.+.+++.+
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 48999999999999999999998876 6777777765543
No 310
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.98 E-value=0.18 Score=40.95 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=32.3
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
+||||++.|.+.+.+++++++|.+.. .++.+.+.++++
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 79999999999999999999998876 677777765544
No 311
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=85.98 E-value=0.08 Score=38.73 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=24.4
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR 159 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr 159 (411)
++||||++.|.+.+.+++++++|.+..
T Consensus 45 ~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 45 KTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp BCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred cEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 889999999999999999998887755
No 312
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=85.80 E-value=0.14 Score=37.50 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=32.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
.+++|||++.|.+.+.+++++ +|.+.. .++.+.+..+++
T Consensus 45 ~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 45 GHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp SSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 378999999999999999999 888876 777777665443
No 313
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.80 E-value=0.13 Score=39.86 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=35.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~ 174 (411)
.+++||+++.|.+.+.++++|+.|.+.-.++.+.+.++...+.
T Consensus 56 ~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 56 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 98 (116)
T ss_dssp CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTTTCC
T ss_pred CccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcccCCC
Confidence 3689999999999999999999998733788888887765443
No 314
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=85.68 E-value=0.11 Score=41.37 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
++||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus 82 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 82 QSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 679999999999999999999998876 778888877665543
No 315
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=85.62 E-value=0.12 Score=39.23 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=32.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.+++|||++.|.+...+++++++|.+.. .++.+.+.+++
T Consensus 67 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 67 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 3789999999999999999999998876 66666666543
No 316
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=85.56 E-value=0.16 Score=39.44 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=29.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK 168 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~ 168 (411)
.++||||++.|.+.+.+++++++|.+.. .++.+.+.+
T Consensus 79 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 79 SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp SCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3789999999999999999999987755 555555443
No 317
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.45 E-value=0.2 Score=38.48 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=34.3
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.+++.
T Consensus 53 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 53 GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 3679999999999999999999999877 778888876654
No 318
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=85.39 E-value=0.13 Score=39.78 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=31.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhh-hhhhccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQ-MANINKL 169 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~ar-aaNld~~ 169 (411)
.++||||++.|.+...+++++++|.+.. .++ .+.+.++
T Consensus 58 g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a 97 (105)
T 2nlw_A 58 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLF 97 (105)
T ss_dssp TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEc
Confidence 3889999999999999999999998866 666 6666543
No 319
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=85.31 E-value=0.093 Score=44.31 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=33.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.++||||++.|.+.+.++++|+.|.+.. .++.+.+..+.
T Consensus 96 g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 96 GQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 4889999999999999999999998866 77777777554
No 320
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.80 E-value=0.14 Score=39.59 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=33.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
.+++|||++.|.+.+.++++| +|.+.. .++.+.+.+++.+
T Consensus 64 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 64 RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 478999999999999999999 998866 7777777766553
No 321
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=84.70 E-value=0.16 Score=39.65 Aligned_cols=41 Identities=7% Similarity=0.233 Sum_probs=34.3
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.+++|||++.|.+.+.++++| +|.+.. .++.+.+..++.++
T Consensus 75 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 75 GHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp SSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred CCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 378999999999999999999 888876 78888887666543
No 322
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.49 E-value=0.15 Score=36.32 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=26.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhh
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANI 166 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNl 166 (411)
.+++|||++.|.+.+.++++++.|. .. .++.+.+
T Consensus 39 ~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 39 KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 3789999999999999999998877 33 4444443
No 323
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.47 E-value=0.091 Score=39.64 Aligned_cols=39 Identities=13% Similarity=0.325 Sum_probs=32.0
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
+++|||++.|.+.+.++++++.|.+.. .++.+.+.++..
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 48 KPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 679999999999999999999998866 666666665443
No 324
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.39 E-value=0.35 Score=35.86 Aligned_cols=40 Identities=10% Similarity=0.260 Sum_probs=33.0
Q ss_pred CCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 135 rGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
||||++.|.+.+.++++++.|.+.. .++.+.+..+++.+.
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 8999999999999999999998866 777777776655443
No 325
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.30 E-value=0.41 Score=35.45 Aligned_cols=42 Identities=2% Similarity=0.015 Sum_probs=34.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
-.+|||++.|.+.+.+++++++|.+.. .++.+.+.+++..+.
T Consensus 41 ~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 41 VVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp ECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 358899999999999999999999877 778888776665443
No 326
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=83.91 E-value=0.18 Score=39.73 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=29.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANIN 167 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld 167 (411)
.++||||++.|.+.+.+++++++|.+.. .++.+.+.
T Consensus 102 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 102 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3789999999999999999999988755 55554443
No 327
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=83.90 E-value=0.17 Score=42.00 Aligned_cols=43 Identities=7% Similarity=-0.062 Sum_probs=36.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLK 175 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~ 175 (411)
+++|||++.|.+...++++|+.|.+.. .++.+.+.++...+..
T Consensus 112 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 112 FSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred cEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 579999999999999999999999877 8888998887776553
No 328
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=83.47 E-value=0.15 Score=41.80 Aligned_cols=37 Identities=8% Similarity=-0.186 Sum_probs=31.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
+++|||++.|.+.+.+.+++++|.+.+ .+|.+-+.+.
T Consensus 69 ~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 69 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 106 (118)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred cceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 356999999999999999999999987 7877766554
No 329
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.39 E-value=0.23 Score=37.68 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=32.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
++||||++.|.+.+.++++|+. .+.. .++.+.+.++.+.+.
T Consensus 56 ~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 56 QSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp CEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred CcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 6789999999999999999988 5544 777777776655443
No 330
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=82.92 E-value=0.42 Score=36.80 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=33.2
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
++|||++.|.+...+++++++|.+.. .++.+.+.+++.
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 69999999999999999999999877 778888776653
No 331
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=82.76 E-value=1.7 Score=36.63 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 196 RVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 196 RVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
+|++-+.|++.. ..||..+|..+|+ +.|+ =+.| | -|||.|.+.+.|..++..+
T Consensus 7 HV~~l~FP~ewK-t~Di~~lFs~fgg-v~I~--WidD--T-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHVTFPKEWK-TSDLYQLFSAFGN-IQIS--WIDD--T-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEECCTTCC-HHHHHHHTTTSEE-EEEE--EEET--T-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEEeCChhhh-hHHHHHHHhccCC-EEEE--EEcC--C-------eEEEEecCHHHHHHHHHhc
Confidence 344449999854 7899999999994 6775 4444 5 5999999999999998864
No 332
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.43 E-value=0.23 Score=39.81 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=29.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
.++||||++.|.+.+.++++| +|.+.. .+|.+.+..+
T Consensus 53 g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 589999999999999999999 676655 6666665433
No 333
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.20 E-value=0.55 Score=38.29 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=37.0
Q ss_pred CCCCccccceecchHHHHHHHHHHh--hH-HhhhhhhcccccCCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQ--SR-EAQMANINKLENELLKP 176 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~--sr-~araaNld~~~~~P~~~ 176 (411)
+.||||++.|.+.+.++++++.|.+ .. .+|.+.+++++.++..+
T Consensus 50 ~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 50 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 96 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCc
Confidence 5689999999999999999999875 33 78999999887776654
No 334
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.00 E-value=0.27 Score=38.10 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=32.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.++||||++.|.+.+.++++|+. .+.. .++.+.+.++.+++.
T Consensus 66 g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 66 KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp SSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred CCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 47899999999999999999987 4433 677777776554433
No 335
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=81.49 E-value=0.37 Score=37.78 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=33.3
Q ss_pred CCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 135 RGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 135 rGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
||||++.|.+.+.+++++++|.+.. .++.+.+.+++..+
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 8999999999999999999999877 77777777665544
No 336
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=81.08 E-value=0.23 Score=38.43 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=28.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
.++||||++.|.+.+.++++|+ |.+.. .+|.+.+..+
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence 5899999999999999999998 76644 5555555443
No 337
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.79 E-value=0.38 Score=38.43 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=31.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P 173 (411)
.++||||++.|.+.+.++++++.+.+ -.++++.++.++..|
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG-LVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCEEECSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEEEEEccCCC
Confidence 48999999999999999999987432 356777777665554
No 338
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.42 E-value=0.42 Score=39.59 Aligned_cols=39 Identities=0% Similarity=-0.095 Sum_probs=36.0
Q ss_pred CccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 136 GFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 136 GFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
|||++.|-+.+.+.+++++|++.. -+|++.+++++.++-
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 999999999999999999999988 889999998887664
No 339
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.84 E-value=0.17 Score=40.11 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.+++|||++.|.+.+.++++|+ |.+.. .+|.+.+..+.
T Consensus 64 g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 64 GKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4889999999999999999998 87765 66666666543
No 340
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.63 E-value=0.22 Score=36.14 Aligned_cols=35 Identities=3% Similarity=-0.034 Sum_probs=27.4
Q ss_pred CCCCccccceecchHHHHHHHHH-HhhH-Hhhhhhhc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEI-QQSR-EAQMANIN 167 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM-~~sr-~araaNld 167 (411)
++||||++.|.+.+.+++++++| .+.. .++.+.+.
T Consensus 46 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 46 QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 46899999999999999999988 5544 55555444
No 341
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.26 E-value=0.29 Score=37.70 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR 159 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr 159 (411)
.++||||++.|.+...+++++++|.+..
T Consensus 63 g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 63 GTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4689999999999999999999887754
No 342
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=78.51 E-value=0.37 Score=39.28 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=36.6
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++||+++.|.+.+.++++|++|.+.. .++.+.+..+++.+.
T Consensus 78 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 78 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 3689999999999999999999998877 888888887765443
No 343
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.30 E-value=1.2 Score=35.28 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=35.2
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH---HhhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr---~araaNld~~~~~P~ 174 (411)
+.||||++.|.+.+.++++++.|.+.. .++.+.+++++.++.
T Consensus 49 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 49 PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 469999999999999999999997642 788888888776554
No 344
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=78.14 E-value=0.28 Score=41.22 Aligned_cols=42 Identities=2% Similarity=-0.060 Sum_probs=32.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.++||||++.|.+.+.++++| +|.+.. .+|.+.+..++..+.
T Consensus 83 g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 589999999999999999999 776655 677777765554433
No 345
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=77.97 E-value=0.23 Score=35.44 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.5
Q ss_pred cCCCCccccceecchHHHHHHHHHHhh
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQS 158 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~s 158 (411)
.+++|||++.|.+.+.++++++ |.+.
T Consensus 38 ~~~~g~afV~f~~~~~a~~a~~-~~~~ 63 (75)
T 2mss_A 38 NRHRGFGFVTFESEDIVEKVCE-IHFH 63 (75)
T ss_dssp TTSCBEEEEECSCHHHHHHHHS-SSCC
T ss_pred CCcCcEEEEEECCHHHHHHHHH-CCCC
Confidence 3789999999999999999886 5443
No 346
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=77.87 E-value=0.2 Score=44.69 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=34.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
.++||||++.|.+.+.++++|++|.+.. .++.+.+.+++.
T Consensus 109 g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 109 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 4899999999999999999999998876 778888776543
No 347
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.83 E-value=0.85 Score=33.84 Aligned_cols=41 Identities=2% Similarity=0.064 Sum_probs=34.8
Q ss_pred CCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 134 PRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 134 PrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
++|||++.|.+...+++++++|.+.. .++.+.+.+++.++.
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 58899999999999999999999877 788888887765544
No 348
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.49 E-value=0.43 Score=39.52 Aligned_cols=42 Identities=7% Similarity=0.026 Sum_probs=34.4
Q ss_pred CCCCccccceecchHHHHHHHHHHhhHH------hhhhhhcccccCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSRE------AQMANINKLENELL 174 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr~------araaNld~~~~~P~ 174 (411)
..||||++.|.+.+-+++|+++|.+.+- ++++-++++..-|.
T Consensus 61 ~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 61 PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 3589999999999999999999999753 66777777766554
No 349
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.43 E-value=0.28 Score=38.20 Aligned_cols=38 Identities=3% Similarity=-0.024 Sum_probs=30.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.++||||++.|.+.+.++++| +|.+.. .+|.+.+..+.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 52 GRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 489999999999999999999 565554 66777666433
No 350
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.33 E-value=0.21 Score=39.64 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred cccchHHHHHHhhcCCCCccccceecchHHHHHHHHHHh--hH-HhhhhhhcccccCCCCC
Q 015240 119 MMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQ--SR-EAQMANINKLENELLKP 176 (411)
Q Consensus 119 ~~~~~~~M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~--sr-~araaNld~~~~~P~~~ 176 (411)
.|-+|+......-.+.||||.+.|.+.+.++++++.|.+ .. .++.+.+++++.++...
T Consensus 35 ~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 35 LGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp TTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred HHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 344444433222235699999999999999999999865 23 78889999888776644
No 351
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.10 E-value=0.19 Score=41.22 Aligned_cols=55 Identities=5% Similarity=0.108 Sum_probs=39.6
Q ss_pred cccccchHHHHHHhhcCCCCccccceecchHHHHHHHHHHhhH---Hhhhhhhccccc
Q 015240 117 EGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLEN 171 (411)
Q Consensus 117 E~~~~~~~~M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~sr---~araaNld~~~~ 171 (411)
...|-+|+.+..-.--++||||++.|.+.+.+++++++|.+.. .+|.+.+++++.
T Consensus 44 ~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 44 LKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp HTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred HHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 3445555554333224789999999999999999999997632 778888776543
No 352
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=76.50 E-value=0.34 Score=34.40 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred cCCCCccccceecchHHHHHHHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQE 154 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeE 154 (411)
.+++|||++.|.+.+.++++++.
T Consensus 38 ~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 38 NKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSSCCCEEEECSSSHHHHHHHTT
T ss_pred CCcCCEEEEEECCHHHHHHHHHh
Confidence 47899999999999999999974
No 353
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=75.37 E-value=0.44 Score=39.57 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKL 169 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~ 169 (411)
.++||||++.|.+.+.++++|+.++..-.+|.+.+..+
T Consensus 81 GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 58999999999999999999975442225666665543
No 354
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=75.29 E-value=0.44 Score=40.88 Aligned_cols=36 Identities=8% Similarity=-0.191 Sum_probs=31.6
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINK 168 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~ 168 (411)
++||||++.+.+.+.+.+++++|.+.+ .||.+-+.+
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 788999999999999999999999987 777776554
No 355
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.23 E-value=0.4 Score=36.26 Aligned_cols=42 Identities=10% Similarity=0.184 Sum_probs=31.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.++++|+++ ..-.++.+.+.++.+++.
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 54 GHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHSC-EEETTEEEEEECCCTTCC
T ss_pred CCccceEEEEECCHHHHHHHHHcC-CeeCCeEEEEEecCCCCc
Confidence 478999999999999999999852 122667777776655544
No 356
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=75.19 E-value=0.21 Score=41.75 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=30.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
.++||||++.|.+.+.++++|+ |.+.. .+|.+.+..+
T Consensus 85 g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 85 GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 5899999999999999999998 77655 6666666543
No 357
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=75.09 E-value=0.93 Score=36.71 Aligned_cols=39 Identities=8% Similarity=-0.086 Sum_probs=33.9
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH---Hhhhhhhccccc
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLEN 171 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr---~araaNld~~~~ 171 (411)
|+||||.+-+.+.+.+.++++.|.+.. .+|.+-++++++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 689999999999999999999998863 588888887654
No 358
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=75.02 E-value=0.59 Score=40.04 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=35.4
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||++.|.+.+.+++++++|.+.. .++.+.+.++...+.
T Consensus 126 g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 126 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 4689999999999999999999998876 777777776655433
No 359
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.28 E-value=0.44 Score=37.46 Aligned_cols=35 Identities=9% Similarity=-0.087 Sum_probs=28.1
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANIN 167 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld 167 (411)
.++||||++.|.+.+.++++|+ |.+.. .++.+.+.
T Consensus 49 g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 49 KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 5799999999999999999998 65544 66666654
No 360
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.19 E-value=0.59 Score=35.93 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=30.0
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLEN 171 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~ 171 (411)
.+++|||++.|.+.+.++++|+. .+.. .+|.+.+.+++.
T Consensus 54 g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 54 GRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 48999999999999999999976 4433 666666665443
No 361
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=73.75 E-value=13 Score=31.74 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=51.3
Q ss_pred CCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 191 MPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 191 ~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
....-.|-|-=.|.. ....+-.-|+.+|.|++...+ ++ .-+-.|+|.+..+|.+++. +||+.|..
T Consensus 21 ~~~~~wVtVFGFp~~--~~~~VL~~F~~~G~Iv~~~~~------~~----~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQA--SASYILLQFAQYGNILKHVMS------NT----GNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGG--GHHHHHHHHHTTSCEEEEEEC------SS----SSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCCEEEEECCCHH--HHHHHHHHHHhhCcEEEeccC------CC----CCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 445666777777875 345677889999999999842 22 5699999999999999998 59999875
No 362
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=73.71 E-value=0.27 Score=38.97 Aligned_cols=38 Identities=8% Similarity=-0.010 Sum_probs=30.8
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
.++||||++.|.+.+.++++|+ |.+.. .+|.+.+..+.
T Consensus 58 g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 4889999999999999999998 87655 66766665543
No 363
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.46 E-value=0.24 Score=39.66 Aligned_cols=55 Identities=7% Similarity=-0.033 Sum_probs=41.6
Q ss_pred cccccchHHHHHHhhcCCCCccccceecchHHHHHHHHHHhhH---Hhhhhhhccccc
Q 015240 117 EGMMISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR---EAQMANINKLEN 171 (411)
Q Consensus 117 E~~~~~~~~M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~sr---~araaNld~~~~ 171 (411)
...|-+|+.+..-.--+.||||++.|.+.+.++++++.|.+.. .+|.+.+++++.
T Consensus 34 ~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 34 LQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp HTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred HHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3456666655433333678999999999999999999998742 788888887764
No 364
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.25 E-value=1.5 Score=36.35 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=37.3
Q ss_pred CCCCccccceecchHHHHHHHHHHhh--H-HhhhhhhcccccCCCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQS--R-EAQMANINKLENELLKPS 177 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~s--r-~araaNld~~~~~P~~~n 177 (411)
+.||||++.|.+.+.++++++.|.+. . .++.+.+++++.++....
T Consensus 65 ~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 65 KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 112 (119)
T ss_dssp GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCcc
Confidence 34899999999999999999999863 3 789999998877776543
No 365
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=72.38 E-value=0.57 Score=45.84 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=37.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELL 174 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~ 174 (411)
.+++|||+|.|.+...+++||+.|.+.. .++.|.|+++...+.
T Consensus 141 g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 141 GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 4789999999999999999999999877 888899988876554
No 366
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=70.37 E-value=0.61 Score=33.81 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=26.5
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-Hhhhhhh
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANI 166 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNl 166 (411)
+++|||++.|.+.+.+++++ +|.+.. .++.+.+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 84 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence 45999999999999999999 888765 5554443
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=70.31 E-value=0.8 Score=42.31 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=33.7
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH-------------HhhhhhhcccccCCCC
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR-------------EAQMANINKLENELLK 175 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr-------------~araaNld~~~~~P~~ 175 (411)
++||||++.|.+...+++|+++|.+.. .++.+++..++..|.+
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 579999999999999999999999844 4778889888877653
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.95 E-value=1.5 Score=34.20 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=22.3
Q ss_pred cCCCCccccceecchHHHHHHHHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEI 155 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM 155 (411)
.++||||++.|.+.+.++++|+.|
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCcccEEEEEECCHHHHHHHHHhh
Confidence 378999999999999999999888
No 369
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=69.13 E-value=0.34 Score=35.41 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=24.9
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhh
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMAN 165 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaN 165 (411)
.+++|||++.|.+.+.++++++.++..-.++.+.
T Consensus 50 g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 83 (87)
T 3s7r_A 50 GRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID 83 (87)
T ss_dssp CCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEE
T ss_pred CccccEEEEEECCHHHHHHHHHhCCCEECCEEEE
Confidence 4789999999999999999996544322444433
No 370
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.08 E-value=0.42 Score=37.34 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=32.2
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P 173 (411)
.++||||++.|.+.+.++++|+. .+.. .+|.+.+..+...+
T Consensus 54 g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 54 GQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp SSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred CCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 57999999999999999999976 5544 67777776665544
No 371
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=67.20 E-value=1.3 Score=35.96 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=35.9
Q ss_pred ccchHHHHHHhhcCCCCccccceecchHHHHHHHHHHhhH-Hhhhhhhccc
Q 015240 120 MISFGKMRRWLENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKL 169 (411)
Q Consensus 120 ~~~~~~M~~wl~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~ 169 (411)
|..++.+..+--..|||||.+.+.+.+-++++++.|.+.. .+|.|-++.+
T Consensus 28 F~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 28 CMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3444443333335799999999999999999999998766 6666655543
No 372
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.24 E-value=1.7 Score=33.38 Aligned_cols=39 Identities=5% Similarity=0.029 Sum_probs=32.6
Q ss_pred CccccceecchHHHHHHHHHHhhH-Hh-----hhhhhcccccCCC
Q 015240 136 GFGEGKVYDTSIEDKLLQEIQQSR-EA-----QMANINKLENELL 174 (411)
Q Consensus 136 GFG~gK~YdT~iEeKlLeEM~~sr-~a-----raaNld~~~~~P~ 174 (411)
|||++.|.+.+.+++++++|.+.. .+ +.+.++.+..++.
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 999999999999999999998876 66 7777776666443
No 373
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=64.32 E-value=11 Score=27.88 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCch-HHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 195 IRVRLLNLPKKKNI-HRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 195 vRVrVGNLPkk~ni-~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
.|+|| |+-++-.+ -.+|-.++...+++-.- .++.-+ +--.|.||.+.... |.++++.+++..+.+
T Consensus 1 ~~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~---~IG~I~----i~d~~s~v~v~~~~-~~~~~~~l~~~~i~g 66 (76)
T 2g0c_A 1 MKLYF-NGGKKKKIRAVDFVGTIAKIDGVSAD---DIGIIT----IMDNASYVEILNGK-GPHVLKVMKNTTVKG 66 (76)
T ss_dssp CEEEE-SCCCC----CHHHHHHHHTSTTCCGG---GEEEEE----ECSSCEEEEECTTC-HHHHHHHHTTCCC--
T ss_pred CEEEE-eCCCccCCCHHHHHHHHHHccCCChh---hccEEE----EeCCcEEEEECHHH-HHHHHHHhccccCcC
Confidence 36677 45555455 55888888776664322 222211 11469999998764 889999999988874
No 374
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=63.51 E-value=2.2 Score=33.43 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=32.1
Q ss_pred CccccceecchHHHHHHHHHHhhH-HhhhhhhcccccCCCCC
Q 015240 136 GFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENELLKP 176 (411)
Q Consensus 136 GFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~P~~~ 176 (411)
|||++.|.+.+.+++++++|.+.. .++.+.+.+++-.+..+
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 999999999999999999999977 77775555555444433
No 375
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=57.16 E-value=2.1 Score=37.72 Aligned_cols=42 Identities=5% Similarity=-0.173 Sum_probs=34.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhH-Hh--hhhhhcccccCC
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSR-EA--QMANINKLENEL 173 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~a--raaNld~~~~~P 173 (411)
+++||||.+.|.+...+++++++|.+.. .+ +.+.+++++.+.
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4579999999999999999999999977 33 777888776543
No 376
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.00 E-value=2.6 Score=31.17 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=34.6
Q ss_pred hhcCCCCccccceecchHHHHHHHHHHhhH-HhhhhhhcccccC
Q 015240 130 LENKPRGFGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLENE 172 (411)
Q Consensus 130 l~nKPrGFG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~~~ 172 (411)
+.++..|.|++.|.+...+++++++|.+.. .++.+.+++++.+
T Consensus 49 ~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 49 NTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred ecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 344566779999999999999999999877 7788877766554
No 377
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.65 E-value=0.89 Score=37.32 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=21.0
Q ss_pred cCCCCccccceecchHHHHHHHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQE 154 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeE 154 (411)
.||||||++.|.+.+.++++|+.
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 48999999999999999999975
No 378
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.66 E-value=1.3 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=28.0
Q ss_pred ccccceecchHHHHHHHHHHhhH-Hhhhhhhcccc
Q 015240 137 FGEGKVYDTSIEDKLLQEIQQSR-EAQMANINKLE 170 (411)
Q Consensus 137 FG~gK~YdT~iEeKlLeEM~~sr-~araaNld~~~ 170 (411)
||++.|.+.+.++++++ |.+.. .++.+.+..+.
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 99999999999999999 88766 77777777444
No 379
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=49.27 E-value=2.6 Score=35.61 Aligned_cols=41 Identities=10% Similarity=-0.041 Sum_probs=34.0
Q ss_pred cCCCCc-cccceecchHHHHHHHHHHhhH-Hh--hhhhhcccccC
Q 015240 132 NKPRGF-GEGKVYDTSIEDKLLQEIQQSR-EA--QMANINKLENE 172 (411)
Q Consensus 132 nKPrGF-G~gK~YdT~iEeKlLeEM~~sr-~a--raaNld~~~~~ 172 (411)
++++|| |.+-|.+.+-++++++.|.+.. .+ +.+.+++++..
T Consensus 62 ~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 62 TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 467899 9999999999999999999977 44 66777776643
No 380
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=47.36 E-value=40 Score=33.88 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=45.5
Q ss_pred CCCCCCCccEEEEcCCCCCCchHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHhCCc
Q 015240 187 EPEDMPSGIRVRLLNLPKKKNIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 187 ~~~~~~dgvRVrVGNLPkk~ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq 264 (411)
|+++.+.--.|++..+|.... ..+|..+|+.+|+ +.|+ -+.+ | =|||.|.+.+.|..++..++..
T Consensus 432 g~d~~~~R~~vl~v~f~~~~~-~~~i~~~fs~fg~-v~V~--widd--t-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 432 GPDLQPKRDHVLHVTFPKEWK-TSDLYQLFSAFGN-IQIS--WIDD--T-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp SCCCCCCGGGEEEEECCTTCC-HHHHHHHGGGGCC-CEEE--ECSS--S-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCcEEEEeCCCCCC-HHHHHHHHHhcCC-EEEE--EEcC--C-------eEEEEECCHHHHHHHHHHHHhC
Confidence 334433333455545888743 6799999999995 6775 3333 3 3999999999999999888644
No 381
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=44.49 E-value=2 Score=32.37 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.1
Q ss_pred CCCCccccceecchHHHHH
Q 015240 133 KPRGFGEGKVYDTSIEDKL 151 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKl 151 (411)
++||||++.|.+.+.+++|
T Consensus 46 ~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp SCCSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHH
Confidence 4899999999998887743
No 382
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=44.42 E-value=14 Score=32.30 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCCCCCchHHHHHHHhccCCCeeEEeeccc-------cCCCCC-CCc--ccceEEEeecCHHHHHHHHHHhCCceecc
Q 015240 201 NLPKKKNIHRDLKSAFKGVPGIINIIPVVS-------GNKKTK-DPI--CKGFAFVDFESEDYATRFVQLFSRQIIAF 268 (411)
Q Consensus 201 NLPkk~ni~kDL~~aFk~vGgvisIkpav~-------~nrKTg-Dp~--CKGFAFVtf~seedA~rfIEk~NGq~~~f 268 (411)
=-|+. ..--+=.-|..+|.|+.-++... .++++. =|. -..+-.|+|.+...|.|++. +||+.|.+
T Consensus 14 GFp~~--~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G 88 (132)
T 3p3d_A 14 GYPET--MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNG 88 (132)
T ss_dssp CCCGG--GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETT
T ss_pred ecCHH--HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCc
Confidence 34664 34556678999999988432211 011121 111 25677999999999999998 79998865
No 383
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.70 E-value=1.7 Score=32.69 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.4
Q ss_pred cCCCCccccceecchHHHHHHH
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQ 153 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLe 153 (411)
.++||||++.|.+.+.++++++
T Consensus 47 g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 47 GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp SCEEEEEEEEESSCCCHHHHTT
T ss_pred CCccceEEEEECCHHHHHHHHh
Confidence 4689999999999999999998
No 384
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=37.92 E-value=3.7 Score=36.04 Aligned_cols=35 Identities=9% Similarity=-0.184 Sum_probs=24.2
Q ss_pred CCCCccccceec------chH--HHHHHH--HHHhhH-Hhhhhhhc
Q 015240 133 KPRGFGEGKVYD------TSI--EDKLLQ--EIQQSR-EAQMANIN 167 (411)
Q Consensus 133 KPrGFG~gK~Yd------T~i--EeKlLe--EM~~sr-~araaNld 167 (411)
+|+|||.+++-| .+. +.++++ +|.+.+ .||.++++
T Consensus 46 ~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 46 LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVI 91 (136)
T ss_dssp CEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEE
T ss_pred ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEE
Confidence 899999999985 332 677776 455555 66666655
No 385
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.63 E-value=6.8 Score=32.46 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=30.7
Q ss_pred CCc-cccceecchHHHHHHHHHHhhH-Hh--hhhhhcccccC
Q 015240 135 RGF-GEGKVYDTSIEDKLLQEIQQSR-EA--QMANINKLENE 172 (411)
Q Consensus 135 rGF-G~gK~YdT~iEeKlLeEM~~sr-~a--raaNld~~~~~ 172 (411)
.|| |.+.|.+.+-+++|++.|.+.. .+ +.+.+++++..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 397 9999999999999999999977 44 46677766543
No 386
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=37.56 E-value=3.3 Score=35.79 Aligned_cols=36 Identities=11% Similarity=-0.119 Sum_probs=27.7
Q ss_pred cCCCCccccceecchHHHHHHHHHHhhHHhhhhhhc
Q 015240 132 NKPRGFGEGKVYDTSIEDKLLQEIQQSREAQMANIN 167 (411)
Q Consensus 132 nKPrGFG~gK~YdT~iEeKlLeEM~~sr~araaNld 167 (411)
.++||||++.|.+.+.++++|+.+...-.|+.+.+.
T Consensus 147 ~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~ 182 (193)
T 2voo_A 147 KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL 182 (193)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 468999999999999999999877653355555543
No 387
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=35.92 E-value=36 Score=28.19 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=36.8
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHHh
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQLF 261 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk~ 261 (411)
.|..-|-.+|+--+.+|-|+ .... ..|-+++.|||.| +.|.+.|.+|--+|
T Consensus 34 eirekLAk~~~~~~~~Vvv~--~~~t-~fG~gkstG~a~I-Yds~e~akk~Epky 84 (101)
T 1xn9_A 34 DVRNKLAAMLNAPLELLVIQ--RIKT-EYGMQESKGYAKL-YEDADRMKQVEQEY 84 (101)
T ss_dssp HHHHHHHHHTTCCTTTEEEE--EEEE-CSSSSEEEEEEEE-CSCHHHHHHHHTGG
T ss_pred HHHHHHHHHHCCCCCEEEEE--eeEe-cCCCceEEEEEEE-ECCHHHHHhhCchh
Confidence 34556888888888888776 3333 3577888999976 78888888876554
No 388
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.52 E-value=38 Score=28.34 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=35.6
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHH
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQ 259 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIE 259 (411)
.|..-|-++|+--+++|-|+ .... ..|-+++.|||.| +.|.+.|.+|--
T Consensus 43 eirekLA~~~~~~~d~Vvv~--~~~T-~fG~gkstG~a~I-Yds~e~akk~Ep 91 (107)
T 2v94_A 43 DVKGKLVAMLDLNPETTVIQ--YIRS-YFGSYKSKGYAKY-YYDKDRMLYIEP 91 (107)
T ss_dssp HHHHHHHHHHTCCGGGEEEE--EEEC-CTTCSEEEEEEEE-ESSHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCEEEEE--eeEe-cCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 45667888887778888776 3333 3677888999976 788888887643
No 389
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=32.90 E-value=2.2 Score=41.29 Aligned_cols=27 Identities=4% Similarity=0.065 Sum_probs=25.0
Q ss_pred CCCCccccceecchHHHHHHHHHHhhH
Q 015240 133 KPRGFGEGKVYDTSIEDKLLQEIQQSR 159 (411)
Q Consensus 133 KPrGFG~gK~YdT~iEeKlLeEM~~sr 159 (411)
+.||||.+.+.+.+-+++|+++|.+.+
T Consensus 54 ~~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 54 PNKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp TTCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 478999999999999999999999976
No 390
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=31.75 E-value=34 Score=28.18 Aligned_cols=50 Identities=8% Similarity=0.020 Sum_probs=34.6
Q ss_pred chHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHHHH
Q 015240 207 NIHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFVQL 260 (411)
Q Consensus 207 ni~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfIEk 260 (411)
.|..-|-++|+--+++|-|+ .... ..|-+.+.|||.| +.|.+.|.++--+
T Consensus 35 eirekLA~~~~~~~~~vvv~--~~~t-~fG~gks~G~a~I-Yds~e~~kk~Epk 84 (98)
T 2g1d_A 35 EIKELIAKHEGVDKELVIVD--NNKQ-LTGKHEIEGYTKI-YADKPSAMLYEPD 84 (98)
T ss_dssp HHHHHHHHHHHSCSTTEECC--CCCC-CSSSSEEEEEEEE-ESHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCCCEEEEE--eeEe-cCCCceEEEEEEE-ECCHHHHHhhCcc
Confidence 45667888887778877776 3322 3577888999976 6777777765433
No 391
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.31 E-value=42 Score=27.91 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=33.3
Q ss_pred hHHHHHHHhccCCCeeEEeeccccCCCCCCCcccceEEEeecCHHHHHHHH
Q 015240 208 IHRDLKSAFKGVPGIINIIPVVSGNKKTKDPICKGFAFVDFESEDYATRFV 258 (411)
Q Consensus 208 i~kDL~~aFk~vGgvisIkpav~~nrKTgDp~CKGFAFVtf~seedA~rfI 258 (411)
|..-|-++|+--+.+|-|+ .... ..|-+++.|||.| +.|.+.|.+|=
T Consensus 35 irekLAk~~~~~~d~Vvv~--~~~T-~fG~gkstG~a~I-Yds~e~akk~E 81 (102)
T 1ywx_A 35 VKMKLVAVLNANKQVLVVD--TLDQ-IFGKLEAEGYAKI-YNDEKAMATIE 81 (102)
T ss_dssp HHHHHHHHHTSCSTTEEEE--EEEE-CSSSSEEEEEEEE-CSCHHHHHHSS
T ss_pred HHHHHHHHHCCCCCEEEEE--ccEe-cCCCceEEEEEEE-ECCHHHHHhhC
Confidence 4556778887778887776 3333 3666788999976 78888887653
No 392
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=25.36 E-value=39 Score=29.92 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=29.9
Q ss_pred cCCCCCCCcccceEEEeecCHHHHHHHHHHhCCceecccee
Q 015240 231 GNKKTKDPICKGFAFVDFESEDYATRFVQLFSRQIIAFGKV 271 (411)
Q Consensus 231 ~nrKTgDp~CKGFAFVtf~seedA~rfIEk~NGq~~~fgKV 271 (411)
.+.+| |+|+ -.++-|.++++|.+|++.+.|+-+.|-.|
T Consensus 103 S~~~g--pMG~-~~l~pFa~k~dAe~Fa~~~GG~Vl~f~ei 140 (175)
T 2hpu_A 103 SARRG--GMGA-PEAVPFSSRDEAAAFVLAEGGQVLALADI 140 (175)
T ss_dssp SSSSC--SSSC-CCEEEESCHHHHHHHHHHTEEEEEEGGGC
T ss_pred CCCCC--CCCC-CcccCcCCHHHHHHHHHHcCCEEEEHHHc
Confidence 34445 4542 58999999999999999999998888655
No 393
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=23.86 E-value=17 Score=35.06 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCcCCCCccccc
Q 015240 94 ESDGSDSDDFDDFDEDDADNDEDEG 118 (411)
Q Consensus 94 ~~d~~~~d~~~d~~~~~~~~~~dE~ 118 (411)
|+|++|+++...+|.+++.+|++|+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (335)
T 4fp9_B 311 DEDDDDEDDDEAEDNDEDEDDDEEE 335 (335)
T ss_dssp -------------------------
T ss_pred cCCCccccccccccccccccccccC
No 394
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.76 E-value=70 Score=21.47 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=16.0
Q ss_pred eecCHHHHHHHHHHhCCc
Q 015240 247 DFESEDYATRFVQLFSRQ 264 (411)
Q Consensus 247 tf~seedA~rfIEk~NGq 264 (411)
||.++..-..|||+|.|.
T Consensus 11 tfrnekelrdfiekfkgr 28 (28)
T 1fme_A 11 TFRNEKELRDFIEKFKGR 28 (28)
T ss_dssp EECCHHHHHHHHHHCCCC
T ss_pred ccccHHHHHHHHHHhcCC
Confidence 678999999999999884
Done!